## Sun Mar 16 15:49:25 2025 ## emapper-2.1.9 ## /home/zhangkaihang/.conda/envs/eggnog-mapper/bin/emapper.py -i /home/zhangkaihang/metadata_analysis/metawrap/paddysoil/4paddy/bin4gtdbtk/DYD2_bin.69.fa -m mmseqs --itype genome -o DYD2_bin.69 --output_dir /home/zhangkaihang/metadata_analysis/eggnog-mapper/paddysoil/4paddy/DYD2_bin.69 --cpu 8 ## #query seed_ortholog evalue score eggNOG_OGs max_annot_lvl COG_category Description Preferred_name GOs EC KEGG_ko KEGG_Pathway KEGG_Module KEGG_Reaction KEGG_rclass BRITE KEGG_TC CAZy BiGG_Reaction PFAMs DYD2_k127_1010747_0 234267.Acid_0265 1.351e-133 449.0 COG3292@1|root,COG3292@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF1906,VCBS DYD2_k127_101433_0 237368.SCABRO_00954 3.627e-144 474.0 COG3385@1|root,COG3385@2|Bacteria 2|Bacteria L transposase activity - - - - - - - - - - - - DDE_Tnp_1,DDE_Tnp_1_4 DYD2_k127_1015312_0 215803.DB30_6730 1.035e-35 154.0 COG2199@1|root,COG2203@1|root,COG2203@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,42Q7A@68525|delta/epsilon subdivisions,2WM81@28221|Deltaproteobacteria,2YW8C@29|Myxococcales 28221|Deltaproteobacteria T diguanylate cyclase - - - - - - - - - - - - GAF,GGDEF DYD2_k127_1015312_1 204669.Acid345_1460 1.676e-26 123.0 COG4254@1|root,COG4254@2|Bacteria 2|Bacteria UW PFAM FecR protein - - - - - - - - - - - - Big_2,FecR,LysM,fn3 DYD2_k127_1015312_2 909663.KI867150_gene2770 2.588e-10 62.0 COG3464@1|root,COG3464@2|Bacteria,1R8B7@1224|Proteobacteria 1224|Proteobacteria L Transposase - - - - - - - - - - - - UPF0236 DYD2_k127_1015932_3 102232.GLO73106DRAFT_00033540 3.712e-07 55.0 2DSZT@1|root,33I3H@2|Bacteria,1GADT@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_1015932_0 195250.CM001776_gene2114 8.105e-20 95.0 COG2442@1|root,COG2442@2|Bacteria,1GKGT@1117|Cyanobacteria,1H248@1129|Synechococcus 1117|Cyanobacteria S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_1015932_1 504472.Slin_4456 2.142e-12 68.0 COG1724@1|root,COG1724@2|Bacteria 2|Bacteria N mRNA binding - - - ko:K07339 - - - - ko00000,ko01000,ko02048 - - - HicA_toxin DYD2_k127_1015932_2 342113.DM82_5552 8.665e-11 66.0 2E9SI@1|root,333YQ@2|Bacteria,1RI7T@1224|Proteobacteria,2VSGB@28216|Betaproteobacteria,1K880@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function (DUF3761) - - - - - - - - - - - - DUF3761 DYD2_k127_1017287_1 1116369.KB890024_gene1665 1.758e-06 59.0 COG0715@1|root,COG0715@2|Bacteria 2|Bacteria P thiamine-containing compound biosynthetic process - - - ko:K02051,ko:K15551,ko:K15556 ko00920,ko02010,map00920,map02010 M00188,M00435,M00437 - - ko00000,ko00001,ko00002,ko02000 3.A.1.16,3.A.1.17,3.A.1.17.1,3.A.1.17.4,3.A.1.17.5 - - NMT1,NMT1_2 DYD2_k127_1017287_0 189753.AXAS01000041_gene2534 2.024e-35 140.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1023993_0 1122138.AQUZ01000004_gene897 1.461e-196 625.0 COG0277@1|root,COG0277@2|Bacteria,2GJ33@201174|Actinobacteria,4DPWR@85009|Propionibacteriales 201174|Actinobacteria C D-arabinono-1,4-lactone oxidase - - - - - - - - - - - - ALO,FAD_binding_4 DYD2_k127_1023993_1 472759.Nhal_1339 1.477e-169 564.0 COG1409@1|root,COG1409@2|Bacteria,1R4EJ@1224|Proteobacteria,1SB9U@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - - - - - - - - - - - DYD2_k127_1029981_0 1156937.MFUM_800018 0.0 1642.0 COG0507@1|root,COG1112@1|root,COG0507@2|Bacteria,COG1112@2|Bacteria,46TIP@74201|Verrucomicrobia,37H8E@326457|unclassified Verrucomicrobia 74201|Verrucomicrobia L AAA domain - - - - - - - - - - - - AAA_11,AAA_12,DUF559 DYD2_k127_1029981_3 387631.Asulf_01536 2.771e-29 131.0 COG2856@1|root,arCOG07475@2157|Archaea,2Y0TB@28890|Euryarchaeota 28890|Euryarchaeota K IrrE N-terminal-like domain - - - - - - - - - - - - Peptidase_M78 DYD2_k127_1029981_4 635013.TherJR_1076 5.366e-27 115.0 COG1439@1|root,COG1439@2|Bacteria,1V7F1@1239|Firmicutes,24WFV@186801|Clostridia 186801|Clostridia S Domain of unknown function (DUF4411) - - - - - - - - - - - - DUF4411 DYD2_k127_1029981_2 1249627.D779_1760 2.188e-36 147.0 COG3727@1|root,COG3727@2|Bacteria,1RH1C@1224|Proteobacteria,1S2V3@1236|Gammaproteobacteria,1WZ3K@135613|Chromatiales 135613|Chromatiales L May nick specific sequences that contain T G mispairs resulting from m5C-deamination - - - ko:K07458 - - - - ko00000,ko01000,ko03400 - - - Vsr DYD2_k127_1029981_1 1415780.JPOG01000001_gene442 6.843e-157 505.0 COG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,1S054@1236|Gammaproteobacteria,1XBY3@135614|Xanthomonadales 135614|Xanthomonadales H DNA methylase - - 2.1.1.37 ko:K00558 ko00270,ko01100,ko05206,map00270,map01100,map05206 M00035 R04858 RC00003,RC00332 ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036 - - - DNA_methylase DYD2_k127_1031698_0 1173022.Cri9333_1596 0.0 1590.0 COG1020@1|root,COG3320@1|root,COG1020@2|Bacteria,COG3320@2|Bacteria,1G0XE@1117|Cyanobacteria,1H837@1150|Oscillatoriales 1117|Cyanobacteria Q Non-ribosomal peptide synthetase modules and related - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,Formyl_trans_N,Methyltransf_12,PP-binding,PilZ DYD2_k127_1031698_1 163908.KB235896_gene3710 1.083e-123 413.0 COG1020@1|root,COG3319@1|root,COG1020@2|Bacteria,COG3319@2|Bacteria,1G3NP@1117|Cyanobacteria,1HIUE@1161|Nostocales 1117|Cyanobacteria Q Thioesterase domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,PP-binding,Thioesterase DYD2_k127_1038300_0 1089548.KI783301_gene939 3.125e-82 280.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1TR2N@1239|Firmicutes,4H9RR@91061|Bacilli 91061|Bacilli EU peptidase yuxL - 3.4.19.1 ko:K01303 - - - - ko00000,ko01000,ko01002 - - - PD40,Peptidase_S9 DYD2_k127_1038300_1 861299.J421_6341 4.692e-48 174.0 COG1917@1|root,COG1917@2|Bacteria,1ZTY8@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Cupin domain - - - - - - - - - - - - Cupin_2 DYD2_k127_1038300_3 1122176.KB903568_gene3469 3.574e-15 80.0 2DPE7@1|root,331QH@2|Bacteria,4NVRX@976|Bacteroidetes,1IZP8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_1038300_2 344747.PM8797T_20059 2.006e-17 87.0 COG3063@1|root,COG3063@2|Bacteria 2|Bacteria NU photosynthesis - - - - - - - - - - - - ANAPC5,Secretin,TPR_16,TPR_4,TPR_6,TPR_8 DYD2_k127_1040378_1 479434.Sthe_3331 8.079e-45 165.0 2BVHN@1|root,32SWN@2|Bacteria,2G8ZV@200795|Chloroflexi 200795|Chloroflexi S Pfam:DUF385 - - - - - - - - - - - - F420H2_quin_red DYD2_k127_1040378_3 497964.CfE428DRAFT_6311 3.613e-05 50.0 299BV@1|root,2ZWES@2|Bacteria,46WNG@74201|Verrucomicrobia 74201|Verrucomicrobia - - - - - - - - - - - - - - - DYD2_k127_1040378_0 189753.AXAS01000041_gene2534 5.024e-77 271.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1040378_2 189753.AXAS01000041_gene2534 1.441e-25 108.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1044938_2 1382359.JIAL01000001_gene1756 3.039e-27 110.0 COG0046@1|root,COG0046@2|Bacteria,3Y30N@57723|Acidobacteria,2JHYK@204432|Acidobacteriia 204432|Acidobacteriia F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL purL - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C DYD2_k127_1044938_5 570952.ATVH01000011_gene311 2.038e-09 59.0 COG0046@1|root,COG0046@2|Bacteria,1MYN4@1224|Proteobacteria,2TRGM@28211|Alphaproteobacteria,2JQPF@204441|Rhodospirillales 204441|Rhodospirillales F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL purL - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C DYD2_k127_1044938_1 1123248.KB893385_gene4832 2.468e-28 121.0 COG0526@1|root,COG1225@1|root,COG0526@2|Bacteria,COG1225@2|Bacteria,4NMEK@976|Bacteroidetes,1IPR4@117747|Sphingobacteriia 976|Bacteroidetes CO PFAM Alkyl hydroperoxide reductase - - - - - - - - - - - - AhpC-TSA,Redoxin DYD2_k127_1044938_4 1123242.JH636436_gene39 1.163e-18 89.0 COG1225@1|root,COG1225@2|Bacteria,2IXKB@203682|Planctomycetes 203682|Planctomycetes O PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - - - - - - - - - - AhpC-TSA,EF-hand_5 DYD2_k127_1044938_6 517418.Ctha_0056 4.38e-08 57.0 COG1225@1|root,COG1225@2|Bacteria 2|Bacteria O peroxiredoxin activity - - - - - - - - - - - - AhpC-TSA DYD2_k127_1044938_3 1121124.JNIX01000013_gene1550 1.408e-22 105.0 2E902@1|root,3339H@2|Bacteria,1N9U6@1224|Proteobacteria,2UFG4@28211|Alphaproteobacteria,2KH8D@204458|Caulobacterales 204458|Caulobacterales - - - - - - - - - - - - - - - DYD2_k127_1044938_0 261292.Nit79A3_2693 6.522e-137 450.0 COG0457@1|root,COG0457@2|Bacteria,1N0A9@1224|Proteobacteria,2VKEE@28216|Betaproteobacteria,371XI@32003|Nitrosomonadales 28216|Betaproteobacteria S COG0457 FOG TPR repeat - - - - - - - - - - - - - DYD2_k127_1056850_2 443143.GM18_4521 4.285e-26 123.0 COG0706@1|root,COG0706@2|Bacteria,1MV5M@1224|Proteobacteria,42MS8@68525|delta/epsilon subdivisions,2WJB6@28221|Deltaproteobacteria 28221|Deltaproteobacteria U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins yidC - - ko:K03217 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP,YidC_periplas DYD2_k127_1056850_1 1009370.ALO_04748 4.959e-27 111.0 COG0759@1|root,COG0759@2|Bacteria,1VEIG@1239|Firmicutes,4H5K3@909932|Negativicutes 909932|Negativicutes S Could be involved in insertion of integral membrane proteins into the membrane - - - ko:K08998 - - - - ko00000 - - - Haemolytic DYD2_k127_1056850_4 243233.MCA3035 4.778e-10 65.0 COG0594@1|root,COG0594@2|Bacteria,1MZQE@1224|Proteobacteria,1S90M@1236|Gammaproteobacteria,1XFKR@135618|Methylococcales 135618|Methylococcales J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme rnpA - 3.1.26.5 ko:K03536 - - - - ko00000,ko01000,ko03016 - - - Ribonuclease_P DYD2_k127_1056850_3 234267.Acid_1093 8.461e-13 70.0 COG0230@1|root,COG0230@2|Bacteria,3Y5W7@57723|Acidobacteria 57723|Acidobacteria J Belongs to the bacterial ribosomal protein bL34 family rpmH - - ko:K02914 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L34 DYD2_k127_1056850_0 794903.OPIT5_00135 2.985e-55 203.0 COG3464@1|root,COG3464@2|Bacteria,46VFX@74201|Verrucomicrobia 74201|Verrucomicrobia L Transposase - - - - - - - - - - - - UPF0236 DYD2_k127_1059284_2 102125.Xen7305DRAFT_00018780 6.484e-27 111.0 COG2227@1|root,COG2227@2|Bacteria,1GC3M@1117|Cyanobacteria,3VKRZ@52604|Pleurocapsales 1117|Cyanobacteria H Tellurite resistance protein TehB - - 2.1.1.222,2.1.1.64 ko:K00568 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04988,R05614,R08769,R08781 RC00003,RC00392,RC01895 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_23 DYD2_k127_1059284_1 927677.ALVU02000001_gene1850 1.704e-87 297.0 COG0463@1|root,COG0463@2|Bacteria,1G20E@1117|Cyanobacteria,1H6BX@1142|Synechocystis 1117|Cyanobacteria M Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_1059284_0 880071.Fleli_3574 1.195e-153 502.0 COG2192@1|root,COG2192@2|Bacteria,4NEV9@976|Bacteroidetes,47JR5@768503|Cytophagia 976|Bacteroidetes O PFAM Carbamoyltransferase - - - ko:K00612 - - - - ko00000,ko01000 - - - Carbam_trans_C,Carbam_trans_N DYD2_k127_1060253_0 671143.DAMO_2120 1.594e-94 336.0 COG0745@1|root,COG2202@1|root,COG2203@1|root,COG4191@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG4191@2|Bacteria,2NQ9F@2323|unclassified Bacteria 2|Bacteria T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,PAS_4,PAS_8,PAS_9,Response_reg DYD2_k127_1060253_1 1094715.CM001373_gene1274 2.341e-61 226.0 COG0332@1|root,COG0332@2|Bacteria 2|Bacteria I beta-ketoacyl-acyl-carrier-protein synthase III activity - - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C DYD2_k127_1060253_2 1208583.COMX_06450 6.809e-33 135.0 COG3600@1|root,COG3600@2|Bacteria,1N78U@1224|Proteobacteria,2UGBJ@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Phage-associated protein gepA - - - - - - - - - - - DUF4065 DYD2_k127_1060253_3 762968.HMPREF9441_00509 1.324e-05 50.0 COG1396@1|root,COG1396@2|Bacteria,4NVMD@976|Bacteroidetes,2G0AZ@200643|Bacteroidia 976|Bacteroidetes K Helix-turn-helix domain - - - - - - - - - - - - HTH_19 DYD2_k127_1068012_8 880072.Desac_1809 9.462e-10 68.0 COG3087@1|root,COG3170@1|root,COG3087@2|Bacteria,COG3170@2|Bacteria,1QYE5@1224|Proteobacteria 1224|Proteobacteria NU Domain of unknown function (DUF4157) - - - - - - - - - - - - DUF4157 DYD2_k127_1068012_1 338966.Ppro_1820 4.862e-93 312.0 2CI52@1|root,2ZC5H@2|Bacteria,1R9WI@1224|Proteobacteria,42SVH@68525|delta/epsilon subdivisions,2WPSB@28221|Deltaproteobacteria,43VVW@69541|Desulfuromonadales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1068012_7 880072.Desac_1811 1.156e-25 109.0 2DXMN@1|root,345K4@2|Bacteria,1P1ZF@1224|Proteobacteria,431B4@68525|delta/epsilon subdivisions,2WX0D@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1068012_2 880072.Desac_1812 3.087e-76 268.0 COG3500@1|root,COG3500@2|Bacteria,1Q2U5@1224|Proteobacteria,42UA7@68525|delta/epsilon subdivisions,2WQM0@28221|Deltaproteobacteria,2MS49@213462|Syntrophobacterales 28221|Deltaproteobacteria S Late control gene D protein - - - - - - - - - - - - Phage_GPD DYD2_k127_1068012_3 880072.Desac_1813 1.616e-49 184.0 COG3501@1|root,COG3501@2|Bacteria,1R540@1224|Proteobacteria,42Q1X@68525|delta/epsilon subdivisions,2WM75@28221|Deltaproteobacteria,2MQMH@213462|Syntrophobacterales 28221|Deltaproteobacteria S Baseplate assembly protein - - - - - - - - - - - - - DYD2_k127_1068012_6 338966.Ppro_1816 1.092e-37 144.0 2CE1N@1|root,32RYY@2|Bacteria,1NB5H@1224|Proteobacteria,431G8@68525|delta/epsilon subdivisions,2WWTX@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1068012_5 338966.Ppro_1815 5.114e-42 157.0 COG3628@1|root,COG3628@2|Bacteria,1N039@1224|Proteobacteria,43DQ3@68525|delta/epsilon subdivisions,2WR64@28221|Deltaproteobacteria,43VVC@69541|Desulfuromonadales 28221|Deltaproteobacteria S Gene 25-like lysozyme - - - ko:K06903 - - - - ko00000 - - - GPW_gp25 DYD2_k127_1068012_0 338966.Ppro_1814 8.65e-181 597.0 COG3299@1|root,COG3299@2|Bacteria,1MWKI@1224|Proteobacteria,42MUS@68525|delta/epsilon subdivisions,2WKK4@28221|Deltaproteobacteria 28221|Deltaproteobacteria S homolog of phage Mu protein gp47 - - - - - - - - - - - - - DYD2_k127_1068012_4 880072.Desac_1817 3.631e-46 183.0 COG3299@1|root,COG3299@2|Bacteria,1MWKI@1224|Proteobacteria,42MUS@68525|delta/epsilon subdivisions,2WKK4@28221|Deltaproteobacteria,2MRM4@213462|Syntrophobacterales 28221|Deltaproteobacteria S homolog of phage Mu protein gp47 - - - - - - - - - - - - Baseplate_J DYD2_k127_1077070_3 1254432.SCE1572_47480 6.507e-57 214.0 COG0515@1|root,COG0515@2|Bacteria 1254432.SCE1572_47480|- KLT protein kinase activity - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - - DYD2_k127_1077070_0 1173028.ANKO01000129_gene1949 9.575e-252 795.0 COG0058@1|root,COG0058@2|Bacteria,1G1HB@1117|Cyanobacteria,1HA6X@1150|Oscillatoriales 1117|Cyanobacteria G Protein of unknown function (DUF3417) glgP - 2.4.1.1 ko:K00688 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R02111 - ko00000,ko00001,ko01000 - GT35 - DUF3417,Phosphorylase DYD2_k127_1077070_2 1304883.KI912532_gene2389 1.135e-64 226.0 COG2110@1|root,COG2110@2|Bacteria,1RCWP@1224|Proteobacteria,2VRGS@28216|Betaproteobacteria,2KWIF@206389|Rhodocyclales 206389|Rhodocyclales S Appr-1'-p processing enzyme - - - - - - - - - - - - Macro DYD2_k127_1077070_4 1267534.KB906755_gene4413 7.774e-13 78.0 2A9J8@1|root,30YRM@2|Bacteria,3Y4IZ@57723|Acidobacteria,2JJDB@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_1077070_1 204669.Acid345_4753 1.238e-159 520.0 COG0480@1|root,COG0480@2|Bacteria,3Y2RR@57723|Acidobacteria,2JI85@204432|Acidobacteriia 204432|Acidobacteriia J Elongation factor G, domain IV - - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 DYD2_k127_1077075_3 234267.Acid_6639 1.102e-06 55.0 COG0596@1|root,COG0596@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 DYD2_k127_1077075_2 1031711.RSPO_c03258 6.91e-63 219.0 COG2764@1|root,COG2764@2|Bacteria,1RF5T@1224|Proteobacteria,2VTA0@28216|Betaproteobacteria,1KHTX@119060|Burkholderiaceae 28216|Betaproteobacteria S glyoxalase bleomycin resistance protein dioxygenase - - - ko:K04750 - - - - ko00000 - - - Glyoxalase DYD2_k127_1077075_1 706587.Desti_1031 4.079e-119 396.0 COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,42N4G@68525|delta/epsilon subdivisions,2WJ8A@28221|Deltaproteobacteria 28221|Deltaproteobacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585,ko:K07799 ko01501,ko01503,ko02020,map01501,map01503,map02020 M00646,M00647,M00648,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1,8.A.1.6 - - HlyD_D23 DYD2_k127_1077075_0 706587.Desti_1032 4.249e-270 843.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,42MF6@68525|delta/epsilon subdivisions,2WJ8D@28221|Deltaproteobacteria 28221|Deltaproteobacteria V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K03296,ko:K18138 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2 - - ACR_tran DYD2_k127_1085333_0 1174528.JH992893_gene5759 1.084e-296 942.0 COG0318@1|root,COG1020@1|root,COG0318@2|Bacteria,COG1020@2|Bacteria,1G4CE@1117|Cyanobacteria 2|Bacteria IQ Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II - - - ko:K15654 ko01054,ko02024,map01054,map02024 - - - ko00000,ko00001,ko01008 - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_1085333_1 1163407.UU7_13658 1.178e-30 123.0 COG0457@1|root,COG3555@1|root,COG0457@2|Bacteria,COG3555@2|Bacteria,1MXZE@1224|Proteobacteria,1S1N0@1236|Gammaproteobacteria,1X5WC@135614|Xanthomonadales 135614|Xanthomonadales O beta-hydroxylase - - - - - - - - - - - - Asp_Arg_Hydrox,TPR_16,TPR_19 DYD2_k127_1088557_1 1123242.JH636434_gene3566 2.424e-22 108.0 COG0613@1|root,COG0613@2|Bacteria,2J1VB@203682|Planctomycetes 203682|Planctomycetes S PHP domain protein - - - - - - - - - - - - - DYD2_k127_1088557_0 1123248.KB893333_gene2799 1.309e-147 492.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,4NHS5@976|Bacteroidetes 976|Bacteroidetes EU Peptidase, S9A B C family, catalytic domain protein - - 3.4.19.1 ko:K01303 - - - - ko00000,ko01000,ko01002 - - - PD40,Peptidase_S9 DYD2_k127_1092192_0 1173263.Syn7502_03001 0.0 1247.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H2GH@1129|Synechococcus 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,PilZ,Thioesterase DYD2_k127_1111896_1 189753.AXAS01000012_gene4337 3.039e-42 168.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1111896_0 189753.AXAS01000041_gene2534 6.373e-82 283.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1131495_0 221288.JH992901_gene2301 0.0009827 52.0 COG1266@1|root,COG1266@2|Bacteria,1G0ZJ@1117|Cyanobacteria,1JI8J@1189|Stigonemataceae 1117|Cyanobacteria S CAAX protease self-immunity - - - ko:K07052 - - - - ko00000 - - - Abi DYD2_k127_1137471_2 717785.HYPMC_3930 1.126e-93 312.0 COG0395@1|root,COG0395@2|Bacteria,1MVVT@1224|Proteobacteria,2TU85@28211|Alphaproteobacteria,3N8K8@45401|Hyphomicrobiaceae 28211|Alphaproteobacteria U Binding-protein-dependent transport system inner membrane component - - - ko:K02026,ko:K10229 ko02010,map02010 M00200,M00207 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1,3.A.1.1.5 - - BPD_transp_1 DYD2_k127_1137471_0 1380391.JIAS01000013_gene3815 3.11e-112 369.0 COG5285@1|root,COG5285@2|Bacteria,1RABR@1224|Proteobacteria,2UN8G@28211|Alphaproteobacteria 28211|Alphaproteobacteria Q Phytanoyl-CoA dioxygenase (PhyH) - - - - - - - - - - - - PhyH DYD2_k127_1137471_1 1161401.ASJA01000010_gene1430 5.909e-111 362.0 COG3316@1|root,COG3316@2|Bacteria,1P9SM@1224|Proteobacteria,2TV17@28211|Alphaproteobacteria,43XZD@69657|Hyphomonadaceae 28211|Alphaproteobacteria L COG3316 Transposase and inactivated derivatives - - - ko:K07498 - - - - ko00000 - - - DDE_Tnp_IS240 DYD2_k127_1137471_3 744979.R2A130_1079 4.569e-14 72.0 COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TQWP@28211|Alphaproteobacteria 28211|Alphaproteobacteria E gamma-glutamyltransferase ggt1 - 2.3.2.2,3.4.19.13 ko:K00681 ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100 - R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935 RC00064,RC00090,RC00096 ko00000,ko00001,ko01000,ko01002 - - - G_glu_transpept DYD2_k127_1143225_3 483219.LILAB_04485 6.204e-11 73.0 COG0810@1|root,COG1629@1|root,COG0810@2|Bacteria,COG4771@2|Bacteria,1R5B9@1224|Proteobacteria,43C1I@68525|delta/epsilon subdivisions,2X7C6@28221|Deltaproteobacteria,2YWPC@29|Myxococcales 28221|Deltaproteobacteria MP Periplasmic protein TonB links inner and outer membranes - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_C,TonB_dep_Rec DYD2_k127_1143225_1 485913.Krac_1243 1.534e-37 143.0 COG2128@1|root,COG2128@2|Bacteria 2|Bacteria S hydroperoxide reductase activity ynjA - - ko:K07486 - - - - ko00000 - - - CMD DYD2_k127_1143225_2 485913.Krac_1243 1.097e-30 124.0 COG2128@1|root,COG2128@2|Bacteria 2|Bacteria S hydroperoxide reductase activity ynjA - - ko:K07486 - - - - ko00000 - - - CMD DYD2_k127_1143225_0 439292.Bsel_3216 1.336e-85 299.0 COG1078@1|root,COG1078@2|Bacteria,1TPVB@1239|Firmicutes,4HAX8@91061|Bacilli,26NFC@186821|Sporolactobacillaceae 91061|Bacilli S Metal dependent phosphohydrolases with conserved 'HD' motif. ywfO GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 - ko:K06885 - - - - ko00000 - - - HD DYD2_k127_1143225_4 240015.ACP_1759 0.0008134 46.0 COG1629@1|root,COG4771@2|Bacteria,3Y3A5@57723|Acidobacteria,2JKBI@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_1143999_1 1168059.KB899087_gene2989 7.906e-113 368.0 COG0450@1|root,COG0450@2|Bacteria,1MX2B@1224|Proteobacteria,2TT09@28211|Alphaproteobacteria,3EYMY@335928|Xanthobacteraceae 28211|Alphaproteobacteria O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - 1-cysPrx_C,AhpC-TSA DYD2_k127_1143999_0 1173027.Mic7113_4893 3.808e-130 441.0 COG0642@1|root,COG0784@1|root,COG2202@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,1G09B@1117|Cyanobacteria,1H7T9@1150|Oscillatoriales 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - DUF4118,GAF,GAF_2,HATPase_c,HisKA,PAS,PAS_4,PAS_9,Response_reg DYD2_k127_1152337_2 861299.J421_0513 3.427e-08 54.0 COG0545@1|root,COG0545@2|Bacteria,1ZU28@142182|Gemmatimonadetes 142182|Gemmatimonadetes G FKBP-type peptidyl-prolyl cis-trans isomerase - - - - - - - - - - - - FKBP_C DYD2_k127_1152337_3 1033737.CAEV01000091_gene1999 0.0009972 48.0 COG1266@1|root,COG1266@2|Bacteria,1VA8S@1239|Firmicutes,248TA@186801|Clostridia,36ESX@31979|Clostridiaceae 186801|Clostridia S CAAX amino terminal protease family - - - ko:K07052 - - - - ko00000 - - - ABC2_membrane_3,Abi DYD2_k127_1152337_1 1267535.KB906767_gene341 2.391e-47 176.0 28JRZ@1|root,2Z9HI@2|Bacteria,3Y7HD@57723|Acidobacteria 57723|Acidobacteria S Domain of unknown function (DUF4126) - - - - - - - - - - - - DUF4126 DYD2_k127_1152337_0 383372.Rcas_1003 4.2e-61 212.0 COG0029@1|root,COG0029@2|Bacteria,2G5JM@200795|Chloroflexi,375AE@32061|Chloroflexia 32061|Chloroflexia H Catalyzes the oxidation of L-aspartate to iminoaspartate - - 1.4.3.16 ko:K00278 ko00250,ko00760,ko01100,map00250,map00760,map01100 M00115 R00357,R00481 RC00006,RC02566 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C DYD2_k127_1153047_0 1116472.MGMO_17c00060 5.936e-142 475.0 COG3829@1|root,COG3829@2|Bacteria,1NU8B@1224|Proteobacteria,1RMHY@1236|Gammaproteobacteria,1XEIK@135618|Methylococcales 135618|Methylococcales KT PFAM RNA polymerase sigma factor 54, interaction - - - - - - - - - - - - HTH_8,PAS_4,Sigma54_activat DYD2_k127_1153047_1 1297617.JPJD01000009_gene2995 6.638e-12 69.0 COG1624@1|root,COG1624@2|Bacteria,1TPRW@1239|Firmicutes,249K8@186801|Clostridia,268WQ@186813|unclassified Clostridiales 186801|Clostridia S Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria dacA - 2.7.7.85 ko:K18672 - - - - ko00000,ko01000 - - - DisA_N DYD2_k127_1153047_2 338966.Ppro_1863 1.036e-09 63.0 2EGIQ@1|root,33AAX@2|Bacteria,1NMZR@1224|Proteobacteria,432RY@68525|delta/epsilon subdivisions,2WX90@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1156471_4 640081.Dsui_0734 6.816e-22 100.0 COG0454@1|root,COG0456@2|Bacteria,1N29T@1224|Proteobacteria,2WAY0@28216|Betaproteobacteria,2KZC4@206389|Rhodocyclales 206389|Rhodocyclales K FR47-like protein - - - - - - - - - - - - - DYD2_k127_1156471_2 118173.KB235914_gene768 7.872e-71 243.0 COG4675@1|root,COG4675@2|Bacteria,1G7A6@1117|Cyanobacteria,1HDSQ@1150|Oscillatoriales 1117|Cyanobacteria S Phage Tail Collar Domain - - - - - - - - - - - - Collar DYD2_k127_1156471_3 760192.Halhy_5169 7.762e-68 237.0 COG4675@1|root,COG4675@2|Bacteria,4NPFY@976|Bacteroidetes,1IXVX@117747|Sphingobacteriia 976|Bacteroidetes S Phage Tail Collar Domain - - - - - - - - - - - - Collar DYD2_k127_1156471_1 266835.14024494 7.622e-72 248.0 COG4675@1|root,COG4675@2|Bacteria,1MZY9@1224|Proteobacteria,2U8Y9@28211|Alphaproteobacteria,43PNV@69277|Phyllobacteriaceae 28211|Alphaproteobacteria S Phage Tail Collar Domain - - - - - - - - - - - - Collar DYD2_k127_1156471_0 1123276.KB893267_gene5108 6.83e-97 353.0 COG2374@1|root,COG3210@1|root,COG4733@1|root,COG4886@1|root,COG2374@2|Bacteria,COG3210@2|Bacteria,COG4733@2|Bacteria,COG4886@2|Bacteria,4PPRP@976|Bacteroidetes 976|Bacteroidetes U Parallel beta-helix repeats - - - - - - - - - - - - - DYD2_k127_1160991_1 204669.Acid345_2609 3.338e-96 323.0 COG3653@1|root,COG3653@2|Bacteria,3Y3Q2@57723|Acidobacteria,2JJ0K@204432|Acidobacteriia 204432|Acidobacteriia Q Amidohydrolase family - - 3.5.1.81 ko:K06015 - - R02192 RC00064,RC00328 ko00000,ko01000 - - - Amidohydro_3 DYD2_k127_1160991_3 1185652.USDA257_c46400 1.056e-24 106.0 COG4274@1|root,COG4274@2|Bacteria,1N29P@1224|Proteobacteria,2UD2U@28211|Alphaproteobacteria,4BKYH@82115|Rhizobiaceae 28211|Alphaproteobacteria S GYD domain - - - - - - - - - - - - GYD DYD2_k127_1160991_0 234267.Acid_1598 8.49e-114 376.0 COG0449@1|root,COG0449@2|Bacteria 2|Bacteria M glutamine-fructose-6-phosphate transaminase (isomerizing) activity glmD - 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - SIS DYD2_k127_1160991_4 324057.Pjdr2_3952 7.109e-08 57.0 COG1725@1|root,COG1725@2|Bacteria,1V6AB@1239|Firmicutes,4HICU@91061|Bacilli,26XCC@186822|Paenibacillaceae 91061|Bacilli K GntR family transcriptional regulator - - - ko:K07979 - - - - ko00000,ko03000 - - - GntR DYD2_k127_1160991_2 644283.Micau_2020 1.013e-30 131.0 2F61Q@1|root,33YK4@2|Bacteria,2IQCX@201174|Actinobacteria,4DIR1@85008|Micromonosporales 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_1162874_2 1218086.BBNB01000012_gene1371 1.976e-25 109.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1RMCK@1236|Gammaproteobacteria,3WXHX@544|Citrobacter 1236|Gammaproteobacteria T Bacterial regulatory protein, Fis family atoC GO:0003674,GO:0003700,GO:0004857,GO:0006355,GO:0008073,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010967,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033238,GO:0042979,GO:0043086,GO:0044092,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - ko:K02481,ko:K07714 ko02020,map02020 M00500 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_1162874_1 330214.NIDE0778 2.535e-80 289.0 COG5000@1|root,COG5000@2|Bacteria 2|Bacteria T phosphorelay sensor kinase activity pilS - 2.7.13.3 ko:K02668 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - HATPase_c,HisKA,PAS,PAS_4,PAS_9 DYD2_k127_1162874_3 498848.TaqDRAFT_3812 1.094e-11 67.0 2E5CT@1|root,3304V@2|Bacteria,1WKNE@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus - - - - - - - - - - - - - - - DYD2_k127_1162874_0 903818.KI912268_gene3152 1.058e-123 408.0 COG1459@1|root,COG1459@2|Bacteria,3Y48Z@57723|Acidobacteria 57723|Acidobacteria NU Type II secretion system (T2SS), protein F - - - ko:K02455 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSF DYD2_k127_1162874_4 204669.Acid345_1391 4.153e-10 63.0 COG2805@1|root,COG2805@2|Bacteria,3Y316@57723|Acidobacteria,2JIT4@204432|Acidobacteriia 204432|Acidobacteriia NU Type II/IV secretion system protein - - - ko:K02669 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE DYD2_k127_1167343_8 667014.Thein_0938 1.746e-77 271.0 COG0210@1|root,COG0210@2|Bacteria,2GGRZ@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria L UvrD-like helicase C-terminal domain - - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - DUF3553,UvrD-helicase,UvrD_C DYD2_k127_1167343_3 1379698.RBG1_1C00001G1351 1.3e-105 360.0 COG0683@1|root,COG0683@2|Bacteria,2NPSN@2323|unclassified Bacteria 2|Bacteria E Receptor family ligand binding region livJ - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 DYD2_k127_1167343_7 1403313.AXBR01000008_gene712 1.149e-90 304.0 COG0410@1|root,COG0410@2|Bacteria,1TPW4@1239|Firmicutes,4HABJ@91061|Bacilli,1ZBFK@1386|Bacillus 91061|Bacilli E COG0410 ABC-type branched-chain amino acid transport systems, ATPase component livF - - ko:K01996 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran DYD2_k127_1167343_6 744872.Spica_0838 1.398e-91 309.0 COG0411@1|root,COG0411@2|Bacteria,2J67E@203691|Spirochaetes 203691|Spirochaetes E Branched-chain amino acid ATP-binding cassette transporter - - - ko:K01995 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C DYD2_k127_1167343_4 1379698.RBG1_1C00001G1349 4.709e-100 338.0 COG4177@1|root,COG4177@2|Bacteria,2NPMP@2323|unclassified Bacteria 2|Bacteria U Branched-chain amino acid transport system / permease component - - - ko:K01995,ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 DYD2_k127_1167343_5 1379698.RBG1_1C00001G1350 1.268e-98 330.0 COG0559@1|root,COG0559@2|Bacteria,2NP7Z@2323|unclassified Bacteria 2|Bacteria E Branched-chain amino acid transport system / permease component livH - - ko:K01997 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 DYD2_k127_1167343_2 246197.MXAN_6665 1.561e-132 436.0 COG0683@1|root,COG0683@2|Bacteria,1MWJ1@1224|Proteobacteria,42MSJ@68525|delta/epsilon subdivisions,2WKHJ@28221|Deltaproteobacteria 28221|Deltaproteobacteria E PFAM Extracellular ligand-binding receptor - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 DYD2_k127_1167343_1 1173026.Glo7428_2158 6.376e-143 458.0 COG0667@1|root,COG0667@2|Bacteria,1G3RI@1117|Cyanobacteria 1117|Cyanobacteria C PFAM aldo keto reductase - - - - - - - - - - - - Aldo_ket_red DYD2_k127_1167343_0 1254432.SCE1572_31205 3.54e-171 554.0 COG0076@1|root,COG0076@2|Bacteria,1MWUX@1224|Proteobacteria,42MYA@68525|delta/epsilon subdivisions,2WKFB@28221|Deltaproteobacteria,2YUKP@29|Myxococcales 28221|Deltaproteobacteria E Pyridoxal-dependent decarboxylase conserved domain - - 4.1.1.105,4.1.1.28 ko:K01593 ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034 M00037,M00042 R00685,R00699,R00736,R02080,R02701,R04909 RC00299 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pyridoxal_deC DYD2_k127_1168781_0 221288.JH992901_gene3913 0.0 1756.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1JK4D@1189|Stigonemataceae 1117|Cyanobacteria Q AMP-binding enzyme C-terminal domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding DYD2_k127_1168781_1 756067.MicvaDRAFT_0621 1.934e-81 293.0 COG1020@1|root,COG3320@1|root,COG1020@2|Bacteria,COG3320@2|Bacteria,1G0XE@1117|Cyanobacteria,1H8R8@1150|Oscillatoriales 1117|Cyanobacteria Q Amino acid adenylation enzyme thioester reductase family protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,Thioesterase DYD2_k127_1180239_1 1033734.CAET01000035_gene3173 4.247e-08 56.0 COG0526@1|root,COG0526@2|Bacteria,1VAPY@1239|Firmicutes,4HJN1@91061|Bacilli,1ZG2C@1386|Bacillus 91061|Bacilli CO alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - AhpC-TSA DYD2_k127_1180239_0 886293.Sinac_3660 2.878e-86 294.0 COG1999@1|root,COG1999@2|Bacteria,2IYYD@203682|Planctomycetes 203682|Planctomycetes S protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems - - - ko:K07152 - - - - ko00000,ko03029 - - - SCO1-SenC DYD2_k127_1193804_4 756499.Desde_4247 1.698e-67 236.0 COG1192@1|root,COG1192@2|Bacteria,1TP8S@1239|Firmicutes,2488C@186801|Clostridia,2603P@186807|Peptococcaceae 186801|Clostridia D PFAM CobQ CobB MinD ParA nucleotide binding domain soj - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 DYD2_k127_1193804_3 1232410.KI421422_gene2042 5.227e-68 242.0 COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,42M8S@68525|delta/epsilon subdivisions,2WNG8@28221|Deltaproteobacteria,43S4I@69541|Desulfuromonadales 28221|Deltaproteobacteria K ParB-like nuclease domain parB - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc DYD2_k127_1193804_8 1192034.CAP_3135 4.023e-08 61.0 COG0711@1|root,COG0711@2|Bacteria,1Q25M@1224|Proteobacteria,437SR@68525|delta/epsilon subdivisions,2X31U@28221|Deltaproteobacteria,2Z2TD@29|Myxococcales 28221|Deltaproteobacteria C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) - - - ko:K02109 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_B DYD2_k127_1193804_7 1125863.JAFN01000001_gene2675 2.955e-11 71.0 COG0711@1|root,COG0711@2|Bacteria,1N97K@1224|Proteobacteria,42VYP@68525|delta/epsilon subdivisions,2WR6T@28221|Deltaproteobacteria 28221|Deltaproteobacteria C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) atpF GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - ko:K02109 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_B DYD2_k127_1193804_5 234267.Acid_0462 4.087e-32 131.0 COG0712@1|root,COG0712@2|Bacteria,3Y4Z4@57723|Acidobacteria 57723|Acidobacteria C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpH - - ko:K02113 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - OSCP DYD2_k127_1193804_0 1267535.KB906767_gene3120 1.814e-237 743.0 COG0056@1|root,COG0056@2|Bacteria,3Y2R6@57723|Acidobacteria,2JIEV@204432|Acidobacteriia 204432|Acidobacteriia C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit atpA - 3.6.3.14 ko:K02111 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N DYD2_k127_1193804_2 1340493.JNIF01000004_gene350 5.599e-87 296.0 COG0224@1|root,COG0224@2|Bacteria,3Y3MN@57723|Acidobacteria 57723|Acidobacteria C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex atpG - - ko:K02115 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt DYD2_k127_1193804_6 903818.KI912268_gene2695 1.313e-17 89.0 COG5652@1|root,COG5652@2|Bacteria,3Y82N@57723|Acidobacteria 57723|Acidobacteria S VanZ like family - - - - - - - - - - - - VanZ DYD2_k127_1193804_1 1120746.CCNL01000006_gene373 1.189e-134 441.0 COG4260@1|root,COG4260@2|Bacteria 2|Bacteria N virion core protein, lumpy skin disease virus ydjI - - - - - - - - - - - Band_7_1,DUF4339,SHOCT DYD2_k127_1194697_1 221288.JH992901_gene3401 4.547e-94 314.0 COG3208@1|root,COG3208@2|Bacteria,1G16V@1117|Cyanobacteria,1JHZI@1189|Stigonemataceae 1117|Cyanobacteria Q Thioesterase domain - - 3.1.2.21 ko:K01071 ko00061,ko01100,map00061,map01100 - R04014,R08157,R08158 RC00014,RC00039 ko00000,ko00001,ko01000,ko01004 - - - Thioesterase DYD2_k127_1194697_2 880073.Calab_2556 9.049e-32 126.0 COG3251@1|root,COG3251@2|Bacteria,2NRE2@2323|unclassified Bacteria 2|Bacteria S MbtH-like protein - - - ko:K05375,ko:K09190 ko00261,ko01130,map00261,map01130 M00736 R10880 RC00064,RC00141,RC03296,RC03297,RC03298 ko00000,ko00001,ko00002 - - - MbtH,YqcI_YcgG DYD2_k127_1194697_0 56107.Cylst_3960 4.387e-132 436.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1HR5M@1161|Nostocales 1117|Cyanobacteria Q Thioesterase domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_1195429_4 994479.GL877883_gene7578 1.248e-17 83.0 COG0102@1|root,COG0102@2|Bacteria,2IFG1@201174|Actinobacteria,4E2WQ@85010|Pseudonocardiales 201174|Actinobacteria J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly rplM GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02871 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L13 DYD2_k127_1195429_3 338963.Pcar_1899 7.156e-50 180.0 COG0103@1|root,COG0103@2|Bacteria,1RD4A@1224|Proteobacteria,42SVI@68525|delta/epsilon subdivisions,2WP7T@28221|Deltaproteobacteria,43SIQ@69541|Desulfuromonadales 28221|Deltaproteobacteria J Ribosomal protein S9/S16 rpsI - - ko:K02996 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S9 DYD2_k127_1195429_0 204669.Acid345_0563 5.999e-104 346.0 COG0052@1|root,COG0052@2|Bacteria,3Y3K2@57723|Acidobacteria,2JI0A@204432|Acidobacteriia 204432|Acidobacteriia J Belongs to the universal ribosomal protein uS2 family rpsB - - ko:K02967 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S2 DYD2_k127_1195429_2 868595.Desca_1513 1.46e-80 274.0 COG0264@1|root,COG0264@2|Bacteria,1TPFJ@1239|Firmicutes,248J2@186801|Clostridia,260PI@186807|Peptococcaceae 186801|Clostridia J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome tsf - - ko:K02357 - - - - ko00000,ko03012,ko03029 - - - EF_TS DYD2_k127_1195429_1 1232410.KI421418_gene2263 9.215e-93 310.0 COG0528@1|root,COG0528@2|Bacteria,1MV3N@1224|Proteobacteria,42M3X@68525|delta/epsilon subdivisions,2WJDF@28221|Deltaproteobacteria,43SW0@69541|Desulfuromonadales 28221|Deltaproteobacteria F Catalyzes the reversible phosphorylation of UMP to UDP pyrH GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 ko:K09903 ko00240,ko01100,map00240,map01100 - R00158 RC00002 ko00000,ko00001,ko01000 - - - AA_kinase DYD2_k127_1195429_5 903818.KI912268_gene3213 0.0008146 43.0 COG0233@1|root,COG0233@2|Bacteria,3Y4AP@57723|Acidobacteria 57723|Acidobacteria J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another frr - - ko:K02838 - - - - ko00000,ko03012 - - - RRF DYD2_k127_1196854_1 1210884.HG799462_gene9115 7.436e-59 214.0 COG2253@1|root,COG2253@2|Bacteria 2|Bacteria V Psort location Cytoplasmic, score - - - - - - - - - - - - AbiEii DYD2_k127_1196854_2 1210884.HG799462_gene9116 1.938e-51 188.0 COG5340@1|root,COG5340@2|Bacteria 2|Bacteria K Psort location Cytoplasmic, score - - - - - - - - - - - - AbiEi_4 DYD2_k127_1196854_0 395964.KE386496_gene635 7.305e-151 484.0 COG4096@1|root,COG4096@2|Bacteria,1QTS7@1224|Proteobacteria,2TUKC@28211|Alphaproteobacteria,3NCUN@45404|Beijerinckiaceae 28211|Alphaproteobacteria L EcoEI R protein C-terminal - - 3.1.21.3 ko:K01153 - - - - ko00000,ko01000,ko02048 - - - EcoEI_R_C,HSDR_N_2,Helicase_C,ResIII DYD2_k127_1198525_0 1267533.KB906733_gene3053 3.159e-118 388.0 COG0465@1|root,COG0465@2|Bacteria,3Y2UK@57723|Acidobacteria,2JI9D@204432|Acidobacteriia 204432|Acidobacteriia O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 DYD2_k127_1198525_1 471853.Bcav_0700 7.297e-10 64.0 COG0037@1|root,COG0037@2|Bacteria,2GJR4@201174|Actinobacteria 201174|Actinobacteria D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine tilS GO:0008150,GO:0040007 2.4.2.8,6.3.4.19 ko:K00760,ko:K04075 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 - R00190,R01132,R01229,R02142,R08237,R08238,R08245,R09597 RC00063,RC00122,RC02633,RC02634 ko00000,ko00001,ko01000,ko03016 - - - ATP_bind_3,TilS DYD2_k127_1209605_2 1047013.AQSP01000128_gene454 3.263e-124 409.0 COG0404@1|root,COG0404@2|Bacteria,2NNSR@2323|unclassified Bacteria 2|Bacteria E The glycine cleavage system catalyzes the degradation of glycine gcvT - 2.1.2.10 ko:K00605 ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200 M00532 R01221,R02300,R04125 RC00022,RC00069,RC00183,RC02834 ko00000,ko00001,ko00002,ko01000 - - - GCV_T,GCV_T_C DYD2_k127_1209605_3 1120973.AQXL01000134_gene1511 2e-45 167.0 COG0509@1|root,COG0509@2|Bacteria,1V6WV@1239|Firmicutes,4HIMA@91061|Bacilli,279UB@186823|Alicyclobacillaceae 91061|Bacilli E Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate gcvH - - ko:K02437 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221 RC00022,RC02834 ko00000,ko00001,ko00002 - - - GCV_H DYD2_k127_1209605_1 349161.Dred_0722 5.288e-146 475.0 COG0403@1|root,COG0403@2|Bacteria,1TQGG@1239|Firmicutes,2492A@186801|Clostridia,2608E@186807|Peptococcaceae 186801|Clostridia E The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor gcvPA - 1.4.4.2 ko:K00282 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 - R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko01000 - - - GDC-P DYD2_k127_1209605_0 204669.Acid345_2458 1.125e-189 605.0 COG1003@1|root,COG1003@2|Bacteria,3Y2UZ@57723|Acidobacteria,2JIAN@204432|Acidobacteriia 204432|Acidobacteriia E The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor gcvPB - 1.4.4.2 ko:K00283 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 - R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko01000 - - - GDC-P DYD2_k127_1213253_1 706587.Desti_3711 9.753e-19 95.0 COG1664@1|root,COG1664@2|Bacteria,1N7TF@1224|Proteobacteria,42VWZ@68525|delta/epsilon subdivisions,2WRPF@28221|Deltaproteobacteria 28221|Deltaproteobacteria M Integral membrane protein CcmA involved in cell shape determination - - - - - - - - - - - - Bactofilin DYD2_k127_1213253_0 1278073.MYSTI_05126 2.832e-50 203.0 COG0652@1|root,COG1413@1|root,COG0652@2|Bacteria,COG1413@2|Bacteria,1R4KH@1224|Proteobacteria,42R08@68525|delta/epsilon subdivisions,2WWSG@28221|Deltaproteobacteria,2YVBS@29|Myxococcales 28221|Deltaproteobacteria M Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - 5.2.1.8 ko:K03768 - - - - ko00000,ko01000,ko03110 - - - HEAT_2,Pro_isomerase DYD2_k127_1226280_0 671143.DAMO_2120 1.709e-78 291.0 COG0745@1|root,COG2202@1|root,COG2203@1|root,COG4191@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG4191@2|Bacteria,2NQ9F@2323|unclassified Bacteria 2|Bacteria T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,PAS_4,PAS_8,PAS_9,Response_reg DYD2_k127_1232551_1 340177.Cag_0738 1.781e-18 99.0 COG1785@1|root,COG2304@1|root,COG2374@1|root,COG2911@1|root,COG2931@1|root,COG3210@1|root,COG3391@1|root,COG1785@2|Bacteria,COG2304@2|Bacteria,COG2374@2|Bacteria,COG2911@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity phoA - 3.1.3.1,3.1.4.46,3.4.24.40 ko:K01077,ko:K01126,ko:K01406,ko:K02396,ko:K07004 ko00564,ko00730,ko00790,ko01100,ko01503,ko02020,ko02040,map00564,map00730,map00790,map01100,map01503,map02020,map02040 M00126 R01030,R01470,R02135,R04620 RC00017,RC00425 ko00000,ko00001,ko00002,ko00537,ko01000,ko01002,ko02035,ko04147 - - - Alk_phosphatase,Exo_endo_phos,LTD DYD2_k127_1232551_0 329726.AM1_1239 4.595e-146 509.0 COG2931@1|root,COG3391@1|root,COG2931@2|Bacteria,COG3391@2|Bacteria,1G0EB@1117|Cyanobacteria 1117|Cyanobacteria DZ PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP - - - ko:K20276 ko02024,map02024 - - - ko00000,ko00001 - - - Calx-beta,DUF4347,He_PIG,HemolysinCabind,PPC,TIG,VCBS DYD2_k127_1233239_0 682795.AciX8_4279 2.317e-146 505.0 COG1629@1|root,COG4771@2|Bacteria,3Y3W1@57723|Acidobacteria,2JIP5@204432|Acidobacteriia 204432|Acidobacteriia P CarboxypepD_reg-like domain - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_1233239_3 204669.Acid345_0424 4.71e-11 74.0 COG0457@1|root,COG0457@2|Bacteria,3Y7EI@57723|Acidobacteria,2JKWT@204432|Acidobacteriia 204432|Acidobacteriia S TPR repeat - - - - - - - - - - - - TPR_16 DYD2_k127_1233239_2 56107.Cylst_0741 1.492e-16 94.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G20P@1117|Cyanobacteria,1HIWM@1161|Nostocales 1117|Cyanobacteria S PFAM Tetratricopeptide repeat - - - - - - - - - - - - CHAT,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8 DYD2_k127_1233239_1 1379270.AUXF01000002_gene1741 7.213e-17 83.0 COG0366@1|root,COG0366@2|Bacteria,1ZUGN@142182|Gemmatimonadetes 142182|Gemmatimonadetes G Cyclomaltodextrinase, N-terminal - - 3.2.1.135 ko:K21575 - - - - ko00000,ko01000 - GH13 - Alpha-amylase,Cyc-maltodext_N DYD2_k127_1236209_1 1395571.TMS3_0117395 3.29e-24 113.0 COG4961@1|root,COG4961@2|Bacteria,1R58C@1224|Proteobacteria,1S1A4@1236|Gammaproteobacteria 1236|Gammaproteobacteria U Putative Flp pilus-assembly TadE/G-like - - - - - - - - - - - - Tad DYD2_k127_1236209_0 1340493.JNIF01000003_gene3295 1.205e-47 179.0 COG4964@1|root,COG4964@2|Bacteria,3Y3DF@57723|Acidobacteria 57723|Acidobacteria U Belongs to the GSP D family - - - ko:K02280 - - - - ko00000,ko02035,ko02044 - - - BON,Secretin,T2SS-T3SS_pil_N DYD2_k127_1236743_0 204669.Acid345_1052 2.004e-112 383.0 COG0457@1|root,COG0515@1|root,COG5616@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,COG5616@2|Bacteria,3Y2HR@57723|Acidobacteria,2JI02@204432|Acidobacteriia 204432|Acidobacteriia KLT Tetratricopeptide repeats - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase,TPR_11,TPR_16,TPR_2,Trans_reg_C DYD2_k127_1236743_2 1267533.KB906734_gene4231 4.577e-46 180.0 COG2304@1|root,COG2304@2|Bacteria,3Y30G@57723|Acidobacteria,2JIK2@204432|Acidobacteriia 204432|Acidobacteriia S PFAM von Willebrand factor type A - - - - - - - - - - - - VWA,VWA_2,VWA_3 DYD2_k127_1236743_3 240015.ACP_1760 2.947e-45 179.0 COG2304@1|root,COG2304@2|Bacteria,3Y2PC@57723|Acidobacteria,2JI8N@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor, type A - - - - - - - - - - - - VWA,VWA_2 DYD2_k127_1236743_1 706587.Desti_3017 3.148e-60 238.0 COG0784@1|root,COG2202@1|root,COG2204@1|root,COG4191@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2204@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,42MC4@68525|delta/epsilon subdivisions,2WIU5@28221|Deltaproteobacteria,2MQZQ@213462|Syntrophobacterales 28221|Deltaproteobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_1238898_0 509191.AEDB02000096_gene3491 8.486e-241 790.0 arCOG06858@1|root,2ZAA2@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1245402_0 370438.PTH_0517 1.567e-117 386.0 COG0165@1|root,COG0165@2|Bacteria,1TNZ6@1239|Firmicutes,2489H@186801|Clostridia,260K5@186807|Peptococcaceae 186801|Clostridia E TIGRFAM argininosuccinate lyase argH - 4.3.2.1 ko:K01755 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230 M00029,M00844,M00845 R01086 RC00445,RC00447 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ASL_C2,Lyase_1 DYD2_k127_1245402_1 997346.HMPREF9374_2156 6.95e-59 218.0 COG1463@1|root,COG2120@1|root,COG1463@2|Bacteria,COG2120@2|Bacteria,1UYPV@1239|Firmicutes,4HCT3@91061|Bacilli,27CPN@186824|Thermoactinomycetaceae 91061|Bacilli Q GlcNAc-PI de-N-acetylase - - - - - - - - - - - - NPCBM_assoc,PIG-L DYD2_k127_1246639_0 1192034.CAP_4888 1.671e-271 851.0 COG0065@1|root,COG0066@1|root,COG0065@2|Bacteria,COG0066@2|Bacteria,1MVYR@1224|Proteobacteria,42M5D@68525|delta/epsilon subdivisions,2WJ59@28221|Deltaproteobacteria,2YX5D@29|Myxococcales 28221|Deltaproteobacteria E Aconitase C-terminal domain - - 4.2.1.33,4.2.1.35 ko:K01703 ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C DYD2_k127_1246639_1 234267.Acid_1953 2.352e-131 424.0 COG4447@1|root,COG4447@2|Bacteria,3Y487@57723|Acidobacteria 57723|Acidobacteria S cellulose binding - - - - - - - - - - - - - DYD2_k127_1253245_2 671143.DAMO_1316 1.19e-37 149.0 COG2204@1|root,COG2204@2|Bacteria,2NNWS@2323|unclassified Bacteria 2|Bacteria T Two component, sigma54 specific, transcriptional regulator, Fis family - - - ko:K07714,ko:K19641 ko02020,map02020 M00500,M00772 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_1253245_0 439235.Dalk_1603 2.729e-75 271.0 COG0745@1|root,COG4191@1|root,COG0745@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,42PGC@68525|delta/epsilon subdivisions,2WKHK@28221|Deltaproteobacteria,2MJ4J@213118|Desulfobacterales 28221|Deltaproteobacteria T ATP-binding region ATPase domain protein - - - - - - - - - - - - FHA,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg,dCache_3 DYD2_k127_1253245_1 56780.SYN_01953 3.59e-62 224.0 COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,42R03@68525|delta/epsilon subdivisions,2WMTZ@28221|Deltaproteobacteria,2MRIP@213462|Syntrophobacterales 28221|Deltaproteobacteria T helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg DYD2_k127_1253245_3 1304872.JAGC01000003_gene3124 8.576e-30 126.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42P5K@68525|delta/epsilon subdivisions,2WIKI@28221|Deltaproteobacteria,2M8G7@213115|Desulfovibrionales 28221|Deltaproteobacteria T two component, sigma54 specific, transcriptional regulator, Fis family - - - ko:K02481,ko:K07713 ko02020,map02020 M00499 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_1272957_0 63737.Npun_R3435 1.076e-156 518.0 COG1020@1|root,COG2175@1|root,COG1020@2|Bacteria,COG2175@2|Bacteria,1G4JD@1117|Cyanobacteria,1HN05@1161|Nostocales 1117|Cyanobacteria Q Taurine catabolism dioxygenase TauD, TfdA family - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,TauD DYD2_k127_1272957_1 240292.Ava_C0007 3.305e-115 380.0 COG1020@1|root,COG1020@2|Bacteria,1G4JD@1117|Cyanobacteria,1HN05@1161|Nostocales 1117|Cyanobacteria Q Taurine catabolism dioxygenase TauD, TfdA family - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,TauD DYD2_k127_1272957_2 221288.JH992901_gene3914 4.691e-24 104.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_1275944_1 1123371.ATXH01000021_gene1117 8.534e-61 216.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,2GHDG@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 DYD2_k127_1275944_2 1131269.AQVV01000015_gene2018 2.274e-36 157.0 COG3852@1|root,COG3852@2|Bacteria 2|Bacteria T phosphorelay sensor kinase activity atoS - 2.7.13.3 ko:K07710,ko:K10942 ko02020,ko05111,map02020,map05111 M00500,M00515 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA,PAS,PAS_8,PAS_9 DYD2_k127_1275944_0 264732.Moth_1244 8.007e-83 280.0 COG0001@1|root,COG0001@2|Bacteria,1TPNH@1239|Firmicutes,248II@186801|Clostridia,42EMC@68295|Thermoanaerobacterales 186801|Clostridia H PFAM aminotransferase class-III hemL - 5.4.3.8 ko:K01845 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02272 RC00677 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 DYD2_k127_1280734_3 931627.MycrhDRAFT_3993 8.068e-48 176.0 COG3059@1|root,COG3059@2|Bacteria,2IIYH@201174|Actinobacteria,2398Q@1762|Mycobacteriaceae 201174|Actinobacteria S Protein of unknown function, DUF417 - - - - - - - - - - - - DUF417 DYD2_k127_1280734_2 1123508.JH636439_gene989 2.27e-53 197.0 COG3386@1|root,COG3386@2|Bacteria,2IXZT@203682|Planctomycetes 203682|Planctomycetes G gluconolactonase - - - - - - - - - - - - SGL DYD2_k127_1280734_0 861299.J421_1876 3.145e-199 634.0 COG3386@1|root,COG3386@2|Bacteria 2|Bacteria G gluconolactonase activity - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL DYD2_k127_1280734_4 107636.JQNK01000009_gene3207 3.345e-38 148.0 COG3193@1|root,COG3193@2|Bacteria,1RGUD@1224|Proteobacteria,2UGI0@28211|Alphaproteobacteria,371DY@31993|Methylocystaceae 28211|Alphaproteobacteria S Haem-degrading - - - - - - - - - - - - Haem_degrading DYD2_k127_1280734_1 861299.J421_1875 2.182e-109 361.0 COG0662@1|root,COG3193@1|root,COG0662@2|Bacteria,COG3193@2|Bacteria 2|Bacteria G Cupin 2, conserved barrel domain protein - - - ko:K11477 - - - - ko00000 - - - Cupin_2,Haem_degrading DYD2_k127_1280734_6 1254432.SCE1572_09955 0.0002817 44.0 28HI5@1|root,2Z7TP@2|Bacteria,1Q2A9@1224|Proteobacteria,437X1@68525|delta/epsilon subdivisions,2X36R@28221|Deltaproteobacteria,2YUJV@29|Myxococcales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1283873_1 448385.sce2040 3.798e-63 228.0 COG0631@1|root,COG0631@2|Bacteria,1NCRX@1224|Proteobacteria,43ABC@68525|delta/epsilon subdivisions,2X2PV@28221|Deltaproteobacteria,2Z0FJ@29|Myxococcales 28221|Deltaproteobacteria T Serine/threonine phosphatases, family 2C, catalytic domain - - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C_2 DYD2_k127_1283873_0 204669.Acid345_1802 4.031e-125 410.0 COG2114@1|root,COG2203@1|root,COG2114@2|Bacteria,COG2203@2|Bacteria,3Y85P@57723|Acidobacteria 57723|Acidobacteria T Adenylyl- / guanylyl cyclase, catalytic domain - - - - - - - - - - - - FHA,GAF_2,Guanylate_cyc DYD2_k127_1287224_2 1111728.ATYS01000010_gene260 2.146e-11 64.0 COG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,1RN5S@1236|Gammaproteobacteria 1236|Gammaproteobacteria J Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 mnmE GO:0000166,GO:0001510,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006457,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009268,GO:0009451,GO:0009628,GO:0009636,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0030488,GO:0030955,GO:0031420,GO:0032259,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0061077,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363 - ko:K03650 - - R08701 RC00053,RC00209,RC00870 ko00000,ko01000,ko03016 - - - MMR_HSR1,MnmE_helical,TrmE_N DYD2_k127_1287224_0 583345.Mmol_2342 2.7e-294 914.0 COG0445@1|root,COG0445@2|Bacteria,1MU6F@1224|Proteobacteria,2VIGG@28216|Betaproteobacteria,2KMCJ@206350|Nitrosomonadales 206350|Nitrosomonadales D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 gidA - - ko:K03495 - - R08701 RC00053,RC00209,RC00870 ko00000,ko03016,ko03036 - - - GIDA,GIDA_assoc DYD2_k127_1287224_1 1266925.JHVX01000008_gene371 3.946e-60 214.0 COG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,2VR3B@28216|Betaproteobacteria,372DW@32003|Nitrosomonadales 28216|Betaproteobacteria J Specifically methylates the N7 position of guanine in position 527 of 16S rRNA rsmG - 2.1.1.170 ko:K03501 - - - - ko00000,ko01000,ko03009,ko03036 - - - GidB DYD2_k127_1293942_0 234267.Acid_1490 4.488e-156 514.0 COG3276@1|root,COG3276@2|Bacteria,3Y6R2@57723|Acidobacteria 57723|Acidobacteria J Elongation factor SelB, winged helix - - - ko:K03833 - - - - ko00000,ko03012 - - - GTP_EFTU,GTP_EFTU_D2,SelB-wing_2,SelB-wing_3 DYD2_k127_1301361_2 1232410.KI421420_gene3155 6.034e-72 246.0 COG0182@1|root,COG0182@2|Bacteria,1MUPM@1224|Proteobacteria,42MJ2@68525|delta/epsilon subdivisions,2WJQB@28221|Deltaproteobacteria,43S9D@69541|Desulfuromonadales 28221|Deltaproteobacteria E Initiation factor 2 subunit family mtnA GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 ko:K08963 ko00270,ko01100,map00270,map01100 M00034 R04420 RC01151 ko00000,ko00001,ko00002,ko01000 - - iAF987.Gmet_0072 IF-2B DYD2_k127_1301361_1 1125863.JAFN01000001_gene322 4.248e-100 336.0 COG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,42MRN@68525|delta/epsilon subdivisions,2WJCH@28221|Deltaproteobacteria 28221|Deltaproteobacteria M PFAM NAD-dependent epimerase dehydratase - - 5.1.3.2,5.1.3.7 ko:K01784,ko:K02473 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R00418,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd DYD2_k127_1301361_0 639282.DEFDS_0115 3.803e-175 559.0 COG1004@1|root,COG1004@2|Bacteria,2GF0F@200930|Deferribacteres 200930|Deferribacteres C UDP binding domain - - 1.1.1.22 ko:K00012 ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 M00014,M00129,M00361,M00362 R00286 RC00291 ko00000,ko00001,ko00002,ko01000 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N DYD2_k127_1313305_0 1125863.JAFN01000001_gene1462 0.0 1101.0 COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,42M2R@68525|delta/epsilon subdivisions,2WJ4J@28221|Deltaproteobacteria 28221|Deltaproteobacteria P ATPase, P-type (transporting), HAD superfamily, subfamily IC copF - 3.6.3.54 ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - E1-E2_ATPase,HMA,Hydrolase,YHS DYD2_k127_1313305_1 1380387.JADM01000030_gene3649 7.088e-05 48.0 COG0789@1|root,COG0789@2|Bacteria,1RJD4@1224|Proteobacteria,1S8DH@1236|Gammaproteobacteria,1XKGY@135619|Oceanospirillales 135619|Oceanospirillales K Transcriptional - - - - - - - - - - - - MerR,MerR-DNA-bind,MerR_1 DYD2_k127_131383_0 335543.Sfum_0660 2.528e-171 548.0 COG0015@1|root,COG0015@2|Bacteria,1MV4B@1224|Proteobacteria,42MYS@68525|delta/epsilon subdivisions,2WJ2E@28221|Deltaproteobacteria,2MREF@213462|Syntrophobacterales 28221|Deltaproteobacteria F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily purB - 4.3.2.2 ko:K01756 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048,M00049 R01083,R04559 RC00379,RC00444,RC00445 ko00000,ko00001,ko00002,ko01000 - - - ADSL_C,Lyase_1 DYD2_k127_131383_3 1238182.C882_1353 5.141e-22 97.0 COG1828@1|root,COG1828@2|Bacteria,1N83G@1224|Proteobacteria,2UF7S@28211|Alphaproteobacteria,2JTEV@204441|Rhodospirillales 204441|Rhodospirillales F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL purS - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - PurS DYD2_k127_131383_1 240015.ACP_0725 2.957e-95 316.0 COG0047@1|root,COG0047@2|Bacteria,3Y2YN@57723|Acidobacteria,2JIBA@204432|Acidobacteriia 204432|Acidobacteriia F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL purQ - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - GATase_5 DYD2_k127_131383_2 29540.C481_11485 2.861e-38 153.0 COG1651@1|root,COG2116@1|root,arCOG02868@2157|Archaea,arCOG03454@2157|Archaea,2XW8R@28890|Euryarchaeota,23U3Q@183963|Halobacteria 183963|Halobacteria OP DSBA-like thioredoxin domain - - - ko:K21990 - - - - ko00000 1.A.16.4 - - Form_Nir_trans,Thioredoxin_4 DYD2_k127_1314801_4 1242864.D187_000932 7.987e-69 244.0 COG0596@1|root,COG0596@2|Bacteria,1R6KU@1224|Proteobacteria 1224|Proteobacteria G Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4 DYD2_k127_1314801_2 326427.Cagg_0311 2.396e-85 295.0 COG0614@1|root,COG0614@2|Bacteria,2G6EF@200795|Chloroflexi,376B5@32061|Chloroflexia 32061|Chloroflexia P PFAM periplasmic binding protein - - - ko:K02016 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko02000 3.A.1.14 - - Peripla_BP_2 DYD2_k127_1314801_1 357808.RoseRS_1484 8.598e-119 389.0 COG0604@1|root,COG0604@2|Bacteria,2G6KH@200795|Chloroflexi,3763V@32061|Chloroflexia 32061|Chloroflexia C PFAM Alcohol dehydrogenase zinc-binding domain protein - - 1.6.5.5 ko:K00344 - - - - ko00000,ko01000 - - - ADH_N,ADH_zinc_N DYD2_k127_1314801_3 237368.SCABRO_03899 2.748e-84 286.0 COG1028@1|root,COG1028@2|Bacteria,2IXE0@203682|Planctomycetes 203682|Planctomycetes IQ with different specificities (related to short-chain alcohol - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD2_k127_1314801_5 118173.KB235914_gene3242 9.935e-45 170.0 COG4636@1|root,COG4636@2|Bacteria,1G55I@1117|Cyanobacteria,1HATI@1150|Oscillatoriales 1117|Cyanobacteria S Putative restriction endonuclease - - - - - - - - - - - - Uma2 DYD2_k127_1314801_0 621372.ACIH01000238_gene2054 2.89e-153 495.0 COG0172@1|root,COG0172@2|Bacteria,1TP4W@1239|Firmicutes,4H9Y4@91061|Bacilli,26RY1@186822|Paenibacillaceae 91061|Bacilli J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b DYD2_k127_1320604_2 1122921.KB898185_gene3790 1.253e-05 53.0 COG1285@1|root,COG1285@2|Bacteria,1V1GI@1239|Firmicutes,4HEQV@91061|Bacilli,274V2@186822|Paenibacillaceae 91061|Bacilli S Domain of unknown function (DUF4956) - - - - - - - - - - - - DUF4956 DYD2_k127_1320604_1 1303518.CCALI_00309 5.335e-23 106.0 COG2365@1|root,COG2365@2|Bacteria 2|Bacteria T protein tyrosine phosphatase activity - - 3.1.3.48 ko:K01104 - - - - ko00000,ko01000 - - - DSPc,DUF442,PTPlike_phytase,Y_phosphatase2,Y_phosphatase3 DYD2_k127_1320604_0 1123376.AUIU01000002_gene1663 1.671e-301 944.0 COG0466@1|root,COG0466@2|Bacteria,3J0DQ@40117|Nitrospirae 40117|Nitrospirae O ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner - - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA,LON_substr_bdg,Lon_C DYD2_k127_1320604_3 551115.Aazo_2049 0.0003881 44.0 COG0071@1|root,COG0071@2|Bacteria,1G5PX@1117|Cyanobacteria,1HM2W@1161|Nostocales 1117|Cyanobacteria O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD2_k127_1320965_4 234267.Acid_7763 4.14e-07 58.0 COG1200@1|root,COG1200@2|Bacteria,3Y31Z@57723|Acidobacteria 57723|Acidobacteria L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) recG - 3.6.4.12 ko:K03655 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,RecG_wedge DYD2_k127_1320965_2 330214.NIDE3747 8.914e-31 125.0 2CIIF@1|root,315FB@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1320965_1 861299.J421_2070 2.046e-52 188.0 28NYH@1|root,2ZBVN@2|Bacteria,1ZTSS@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Disulphide isomerase - - - - - - - - - - - - Disulph_isomer DYD2_k127_1320965_3 330214.NIDE4120 5.322e-25 110.0 COG0802@1|root,COG0802@2|Bacteria,3J1AZ@40117|Nitrospirae 40117|Nitrospirae S Threonylcarbamoyl adenosine biosynthesis protein TsaE - - - ko:K06925 - - - - ko00000,ko03016 - - - TsaE DYD2_k127_1320965_0 1265505.ATUG01000001_gene3288 1.104e-92 325.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,42ND6@68525|delta/epsilon subdivisions,2WIJS@28221|Deltaproteobacteria,2MHY5@213118|Desulfobacterales 28221|Deltaproteobacteria G Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration nnrD - 4.2.1.136,5.1.99.6 ko:K17758,ko:K17759 - - - - ko00000,ko01000 - - - Carb_kinase,YjeF_N DYD2_k127_1320965_5 234267.Acid_1531 1.643e-05 49.0 COG0728@1|root,COG0728@2|Bacteria,3Y6N1@57723|Acidobacteria 57723|Acidobacteria S MviN-like protein - - - ko:K03980 - - - - ko00000,ko01011,ko02000 2.A.66.4 - - MVIN DYD2_k127_1332508_1 479434.Sthe_1950 4.137e-68 248.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,2G5Q5@200795|Chloroflexi,27Y10@189775|Thermomicrobia 200795|Chloroflexi EU PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - - - - - - - - - - PD40,Peptidase_S9 DYD2_k127_1332508_0 1379698.RBG1_1C00001G0607 5.3e-101 347.0 COG0457@1|root,COG0515@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,2NQNE@2323|unclassified Bacteria 2|Bacteria T Serine threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PASTA,Pkinase,TPR_2,TPR_8 DYD2_k127_1354426_1 765911.Thivi_2617 1.099e-53 213.0 COG4974@1|root,COG4974@2|Bacteria,1MZES@1224|Proteobacteria,1S9MN@1236|Gammaproteobacteria,1X0YU@135613|Chromatiales 135613|Chromatiales L Plasmid pRiA4b ORF-3-like protein - - - - - - - - - - - - PRiA4_ORF3 DYD2_k127_1354426_0 1122194.AUHU01000002_gene2935 2.508e-86 311.0 COG3012@1|root,COG3012@2|Bacteria 2|Bacteria - - CP_0501 - - ko:K07039 - - - - ko00000 - - - HTH_psq,SEC-C DYD2_k127_1354426_2 449447.MAE_55090 2.617e-47 172.0 COG3654@1|root,COG3654@2|Bacteria,1G6SU@1117|Cyanobacteria 1117|Cyanobacteria S TIGRFAM death-on-curing family protein - - - ko:K07341 - - - - ko00000,ko02048 - - - Fic DYD2_k127_1354426_4 1122970.AUHC01000022_gene2491 4.099e-25 107.0 COG2002@1|root,COG2002@2|Bacteria,1QVJI@1224|Proteobacteria,2TWG9@28211|Alphaproteobacteria 28211|Alphaproteobacteria K Addiction module antidote - - - - - - - - - - - - MazE_antitoxin DYD2_k127_1357378_0 1173028.ANKO01000219_gene470 3.004e-57 222.0 COG5001@1|root,COG5001@2|Bacteria,1G0BS@1117|Cyanobacteria,1H9V4@1150|Oscillatoriales 1117|Cyanobacteria T Diguanylate cyclase - - - - - - - - - - - - CBS,CHASE4,EAL,GGDEF,PAS,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_1357378_1 1500894.JQNN01000001_gene1812 1.649e-28 121.0 COG0745@1|root,COG0745@2|Bacteria 1500894.JQNN01000001_gene1812|- T phosphorelay signal transduction system - - - - - - - - - - - - - DYD2_k127_1357378_2 272563.CD630_03190 2.329e-09 60.0 COG5002@1|root,COG5002@2|Bacteria,1UIAP@1239|Firmicutes,25EFU@186801|Clostridia 186801|Clostridia T ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_1362202_1 56780.SYN_02371 2.331e-110 366.0 COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,1MU8P@1224|Proteobacteria,42N1C@68525|delta/epsilon subdivisions,2WIP5@28221|Deltaproteobacteria,2MQ94@213462|Syntrophobacterales 28221|Deltaproteobacteria H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ribBA - 3.5.4.25,4.1.99.12 ko:K14652 ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110 M00125,M00840 R00425,R07281 RC00293,RC01792,RC01815,RC02504 ko00000,ko00001,ko00002,ko01000 - - - DHBP_synthase,GTP_cyclohydro2 DYD2_k127_1362202_2 316057.RPD_0644 7.235e-09 59.0 COG2331@1|root,COG2331@2|Bacteria,1Q4C9@1224|Proteobacteria,2UMSM@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Putative regulatory protein - - - - - - - - - - - - Zn-ribbon_8 DYD2_k127_1362202_0 891968.Anamo_1078 1.035e-119 393.0 COG0715@1|root,COG0715@2|Bacteria 2|Bacteria P thiamine-containing compound biosynthetic process - - 4.1.1.55 ko:K04102 ko00624,ko01100,ko01120,map00624,map01100,map01120 M00623 R01635,R05375 RC00390 ko00000,ko00001,ko00002,ko01000 - - - NMT1 DYD2_k127_1362202_3 1499967.BAYZ01000029_gene1202 0.0001442 51.0 COG2114@1|root,COG5000@1|root,COG2114@2|Bacteria,COG5000@2|Bacteria,2NP16@2323|unclassified Bacteria 2|Bacteria T Adenylyl- / guanylyl cyclase, catalytic domain - - 3.1.3.3,4.6.1.1 ko:K01768,ko:K07315 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000,ko03021 - - - Guanylate_cyc,HAMP,Response_reg,dCache_1,dCache_3 DYD2_k127_1369679_2 1267533.KB906741_gene405 6.159e-16 78.0 COG4638@1|root,COG4638@2|Bacteria,3Y547@57723|Acidobacteria,2JNCI@204432|Acidobacteriia 204432|Acidobacteriia P Ring hydroxylating alpha subunit (catalytic domain) - - - ko:K00479 - - - - ko00000 - - - Rieske,Ring_hydroxyl_A DYD2_k127_1369679_0 1496688.ER33_10405 1.711e-107 363.0 COG0531@1|root,COG0531@2|Bacteria,1G2GM@1117|Cyanobacteria,22S6X@167375|Cyanobium 1117|Cyanobacteria E amino acid - - - ko:K03294,ko:K13868 ko04974,map04974 - - - ko00000,ko00001,ko02000 2.A.3.2,2.A.3.8.15 - - AA_permease_2 DYD2_k127_1369679_1 1183438.GKIL_3395 3.966e-105 348.0 COG0515@1|root,COG0515@2|Bacteria,1G3GV@1117|Cyanobacteria 1183438.GKIL_3395|- T serine threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - - DYD2_k127_1376363_1 1340493.JNIF01000004_gene652 1.198e-133 432.0 COG2274@1|root,COG2274@2|Bacteria 2|Bacteria V protein secretion by the type I secretion system - - - ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106 - - ABC_membrane,ABC_tran DYD2_k127_1376363_6 246197.MXAN_0201 3.721e-06 52.0 COG2267@1|root,COG2267@2|Bacteria,1REM6@1224|Proteobacteria,42VM4@68525|delta/epsilon subdivisions,2WRYC@28221|Deltaproteobacteria,2Z1VR@29|Myxococcales 28221|Deltaproteobacteria I Pfam:DUF2305 - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 DYD2_k127_1376363_2 1242864.D187_000036 1.348e-41 161.0 COG2267@1|root,COG2267@2|Bacteria,1R08U@1224|Proteobacteria,42XGE@68525|delta/epsilon subdivisions,2X8N8@28221|Deltaproteobacteria,2Z36G@29|Myxococcales 28221|Deltaproteobacteria I Pfam:DUF2305 - - - - - - - - - - - - Abhydrolase_1 DYD2_k127_1376363_5 644966.Tmar_1104 1.012e-19 93.0 COG1310@1|root,COG1310@2|Bacteria,1V6TY@1239|Firmicutes,24JI8@186801|Clostridia 186801|Clostridia S Mov34 MPN PAD-1 family - - 3.13.1.6 ko:K21140 ko04122,map04122 - R11524 RC00064,RC00090 ko00000,ko00001,ko01000 - - - Prok-JAB DYD2_k127_1376363_0 1122216.AUHW01000012_gene1521 4.482e-190 611.0 COG0173@1|root,COG0173@2|Bacteria,1TPCN@1239|Firmicutes,4H32N@909932|Negativicutes 909932|Negativicutes J Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) aspS - 6.1.1.12 ko:K01876 ko00970,map00970 M00359,M00360 R05577 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - GAD,tRNA-synt_2,tRNA-synt_2d,tRNA_anti-codon DYD2_k127_1376363_3 63737.Npun_R1214 2.634e-31 127.0 COG0346@1|root,COG0346@2|Bacteria,1GHQQ@1117|Cyanobacteria,1HPG9@1161|Nostocales 1117|Cyanobacteria C PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - - - - - - - - - - Glyoxalase DYD2_k127_1376363_4 401053.AciPR4_1363 1.57e-30 124.0 COG0666@1|root,COG0666@2|Bacteria,3Y3EY@57723|Acidobacteria 57723|Acidobacteria S ankyrin repeats - - - - - - - - - - - - - DYD2_k127_1377640_1 290397.Adeh_3529 2.776e-14 77.0 COG0642@1|root,COG0784@1|root,COG2461@1|root,COG5002@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,COG2461@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,43CCU@68525|delta/epsilon subdivisions,2X7NQ@28221|Deltaproteobacteria,2YX99@29|Myxococcales 28221|Deltaproteobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,Response_reg DYD2_k127_1377640_0 448385.sce3507 6.298e-118 398.0 COG0642@1|root,COG0745@1|root,COG5002@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,42M0Y@68525|delta/epsilon subdivisions,2X791@28221|Deltaproteobacteria,2YUF6@29|Myxococcales 28221|Deltaproteobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,PAS_4,Response_reg DYD2_k127_1385663_1 1124983.PFLCHA0_c35610 1.086e-14 89.0 COG4625@1|root,COG4625@2|Bacteria 2|Bacteria T pathogenesis - - 3.4.21.50 ko:K01337,ko:K20276,ko:K21449 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko02000 1.B.40.2 - - Autotransporter,Big_3_5,Cadherin-like,Calx-beta,DUF4347,He_PIG,PATR,TIG,fn3 DYD2_k127_1385663_3 416591.Tlet_1231 2.355e-05 58.0 COG1520@1|root,COG1716@1|root,COG1520@2|Bacteria,COG1716@2|Bacteria,2GDJT@200918|Thermotogae 200918|Thermotogae T peptidase C11 clostripain - - - - - - - - - - - - Peptidase_C11 DYD2_k127_1385663_2 1128421.JAGA01000002_gene1498 1.974e-06 62.0 COG1502@1|root,COG1502@2|Bacteria,2NQ5Z@2323|unclassified Bacteria 2|Bacteria I PLD-like domain - - 3.1.4.4 ko:K17717 ko00564,ko00565,ko01100,ko01110,map00564,map00565,map01100,map01110 - R01310,R02051,R07385 RC00017,RC00425 ko00000,ko00001,ko01000 - - - PLDc_2 DYD2_k127_1385663_0 330214.NIDE4234 1.034e-70 247.0 COG0284@1|root,COG0284@2|Bacteria,3J0SC@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) pyrF - 4.1.1.23 ko:K01591 ko00240,ko01100,map00240,map01100 M00051 R00965 RC00409 ko00000,ko00001,ko00002,ko01000 - - - OMPdecase DYD2_k127_1390233_0 1278073.MYSTI_04136 2.43e-44 166.0 COG0663@1|root,COG0663@2|Bacteria,1RD76@1224|Proteobacteria,42MR0@68525|delta/epsilon subdivisions,2WP23@28221|Deltaproteobacteria,2Z0GF@29|Myxococcales 28221|Deltaproteobacteria S COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily yrdA - - - - - - - - - - - Hexapep DYD2_k127_1390233_2 1267535.KB906767_gene3216 4.325e-09 70.0 COG2823@1|root,COG2823@2|Bacteria,3Y3MJ@57723|Acidobacteria 57723|Acidobacteria S Periplasmic or secreted lipoprotein - - - - - - - - - - - - BON DYD2_k127_1390233_1 399739.Pmen_1408 1.481e-16 79.0 COG0717@1|root,COG0717@2|Bacteria,1MV2J@1224|Proteobacteria,1RMCD@1236|Gammaproteobacteria,1YD4N@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria F Belongs to the dCTP deaminase family dcd GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006244,GO:0006253,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008829,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009166,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0015949,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046065,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.5.4.13 ko:K01494 ko00240,ko01100,map00240,map01100 M00053 R00568,R02325 RC00074 ko00000,ko00001,ko00002,ko01000 - - iPC815.YPO1525 DCD,dUTPase DYD2_k127_1396296_2 1382306.JNIM01000001_gene2938 8.511e-06 56.0 COG0477@1|root,COG2814@2|Bacteria 2|Bacteria EGP Major facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD2_k127_1396296_1 316067.Geob_3469 2.5e-35 136.0 COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,42U6P@68525|delta/epsilon subdivisions,2WQ00@28221|Deltaproteobacteria,43V75@69541|Desulfuromonadales 28221|Deltaproteobacteria L SMART HNH nuclease - - - ko:K07451 - - - - ko00000,ko01000,ko02048 - - - HNH_5 DYD2_k127_1396296_0 404589.Anae109_1864 2.446e-143 461.0 COG0598@1|root,COG0598@2|Bacteria,1MX09@1224|Proteobacteria,42NS9@68525|delta/epsilon subdivisions,2WJMJ@28221|Deltaproteobacteria,2YV6M@29|Myxococcales 28221|Deltaproteobacteria P Mediates influx of magnesium ions corA - - ko:K03284,ko:K16074 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3,1.A.35.4 - - CorA DYD2_k127_1403056_0 1173025.GEI7407_0742 6.661e-150 496.0 COG3975@1|root,COG3975@2|Bacteria,1G0YP@1117|Cyanobacteria,1H7J1@1150|Oscillatoriales 1117|Cyanobacteria S protease with the C-terminal PDZ domain - - - - - - - - - - - - PDZ_2,Peptidase_M61 DYD2_k127_1403056_2 1158756.AQXQ01000007_gene386 1.602e-24 108.0 COG2259@1|root,COG2259@2|Bacteria,1RDYW@1224|Proteobacteria,1S3RT@1236|Gammaproteobacteria,1X0SV@135613|Chromatiales 135613|Chromatiales S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX DYD2_k127_1403056_1 1128421.JAGA01000003_gene3248 5.899e-69 242.0 COG0477@1|root,COG2814@2|Bacteria,2NQ08@2323|unclassified Bacteria 2|Bacteria EGP MFS_1 like family - - - ko:K08151,ko:K08153 - M00668,M00717 - - ko00000,ko00002,ko01504,ko02000 2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75,2.A.1.2.8 - - MFS_1,MFS_1_like,Sugar_tr DYD2_k127_1405774_0 518766.Rmar_2028 3.931e-81 287.0 COG0457@1|root,COG3829@1|root,COG0457@2|Bacteria,COG3829@2|Bacteria,4PM5Y@976|Bacteroidetes,1FIME@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes K Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8,Sigma54_activat DYD2_k127_1410458_5 404589.Anae109_1390 4.445e-11 66.0 COG0696@1|root,COG0696@2|Bacteria 2|Bacteria G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate - - - - - - - - - - - - Metalloenzyme DYD2_k127_1410458_0 204669.Acid345_3274 1.074e-131 434.0 COG2204@1|root,COG2204@2|Bacteria,3Y3HH@57723|Acidobacteria,2JI5D@204432|Acidobacteriia 204432|Acidobacteriia T Sigma-54 interaction domain - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_1410458_3 335543.Sfum_3201 1.723e-66 236.0 COG0007@1|root,COG1587@1|root,COG0007@2|Bacteria,COG1587@2|Bacteria,1MUI0@1224|Proteobacteria,42MCB@68525|delta/epsilon subdivisions,2WIRJ@28221|Deltaproteobacteria,2MQX4@213462|Syntrophobacterales 28221|Deltaproteobacteria H Belongs to the precorrin methyltransferase family hemD - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 ko:K02302,ko:K02303,ko:K13542 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02864,R03165,R03194,R03947 RC00003,RC00871,RC01012,RC01034,RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4,TP_methylase DYD2_k127_1410458_2 484770.UFO1_0017 1.145e-84 290.0 COG0181@1|root,COG0181@2|Bacteria,1TPFQ@1239|Firmicutes,4H1XA@909932|Negativicutes 909932|Negativicutes H Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps hemC - 2.5.1.61 ko:K01749 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00084 RC02317 ko00000,ko00001,ko00002,ko01000 - - - Porphobil_deam,Porphobil_deamC DYD2_k127_1410458_1 1232410.KI421412_gene411 3.647e-114 382.0 COG0373@1|root,COG0373@2|Bacteria,1MU41@1224|Proteobacteria,42MUG@68525|delta/epsilon subdivisions,2WISB@28221|Deltaproteobacteria,43SX3@69541|Desulfuromonadales 28221|Deltaproteobacteria H Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) hemA - 1.2.1.70 ko:K02492 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R04109 RC00055,RC00149 ko00000,ko00001,ko00002,ko01000 - - - GlutR_N,GlutR_dimer,Shikimate_DH DYD2_k127_1410458_4 1232410.KI421412_gene412 1.316e-48 184.0 COG0755@1|root,COG0755@2|Bacteria,1RCCI@1224|Proteobacteria,42PVM@68525|delta/epsilon subdivisions,2WJ7I@28221|Deltaproteobacteria,43SCE@69541|Desulfuromonadales 28221|Deltaproteobacteria O Cytochrome C assembly protein - - - - - - - - - - - - Cytochrom_C_asm DYD2_k127_141262_1 401053.AciPR4_0620 3.676e-160 527.0 COG0323@1|root,COG0323@2|Bacteria,3Y2T3@57723|Acidobacteria,2JI29@204432|Acidobacteriia 204432|Acidobacteriia L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL - - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C DYD2_k127_141262_2 1384056.N787_08195 9.513e-56 201.0 COG1670@1|root,COG1670@2|Bacteria,1N619@1224|Proteobacteria,1S2TR@1236|Gammaproteobacteria,1XCMN@135614|Xanthomonadales 135614|Xanthomonadales J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 DYD2_k127_141262_4 316067.Geob_1732 1.842e-21 100.0 2ETBC@1|root,33KVA@2|Bacteria,1NPDX@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_141262_0 522306.CAP2UW1_2246 3.414e-215 687.0 COG1948@1|root,COG4880@2|Bacteria,1R9N2@1224|Proteobacteria,2W1I5@28216|Betaproteobacteria 28216|Betaproteobacteria L Beta propeller domain - - - - - - - - - - - - Beta_propel DYD2_k127_141262_3 861299.J421_2552 2.264e-36 147.0 COG0546@1|root,COG0546@2|Bacteria,1ZTK9@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD DYD2_k127_1413387_12 460265.Mnod_3490 5.008e-35 136.0 COG0535@1|root,COG0535@2|Bacteria,1PKRS@1224|Proteobacteria,2UZDC@28211|Alphaproteobacteria,1JU6F@119045|Methylobacteriaceae 28211|Alphaproteobacteria C Radical SAM superfamily - - - - - - - - - - - - Radical_SAM DYD2_k127_1413387_8 460265.Mnod_2732 5.819e-43 165.0 2EA1Q@1|root,33470@2|Bacteria,1R759@1224|Proteobacteria,2U3YP@28211|Alphaproteobacteria,1JTDH@119045|Methylobacteriaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1413387_9 1123278.KB893580_gene892 1.691e-40 160.0 COG0500@1|root,COG2226@2|Bacteria,4NIN6@976|Bacteroidetes,47JAJ@768503|Cytophagia 976|Bacteroidetes Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_25,Ubie_methyltran DYD2_k127_1413387_4 388051.AUFE01000047_gene2465 1.183e-76 263.0 COG0398@1|root,COG0398@2|Bacteria,1N99S@1224|Proteobacteria,2VVYF@28216|Betaproteobacteria 28216|Betaproteobacteria S SNARE associated Golgi protein - - - - - - - - - - - - SNARE_assoc DYD2_k127_1413387_13 1123368.AUIS01000005_gene414 8.739e-32 127.0 2E36Z@1|root,32Y6R@2|Bacteria,1NCM6@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_1413387_0 1429916.X566_14165 2.882e-144 465.0 COG0655@1|root,COG0655@2|Bacteria,1MX6A@1224|Proteobacteria,2TU75@28211|Alphaproteobacteria,3JTKI@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S NADPH-dependent FMN reductase - - - - - - - - - - - - FMN_red DYD2_k127_1413387_3 1173024.KI912148_gene3333 3.931e-78 268.0 COG0412@1|root,COG0412@2|Bacteria,1G1CY@1117|Cyanobacteria,1JJI9@1189|Stigonemataceae 1117|Cyanobacteria Q Dienelactone hydrolase family - - - - - - - - - - - - DLH DYD2_k127_1413387_7 1476583.DEIPH_ctg139orf0014 4.908e-46 170.0 COG0517@1|root,COG0517@2|Bacteria,1WNHR@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S COGs COG2905 signal-transduction protein containing cAMP-binding and CBS domains - - - - - - - - - - - - CBS DYD2_k127_1413387_10 886293.Sinac_4160 1.094e-39 155.0 COG0071@1|root,COG0071@2|Bacteria,2J11X@203682|Planctomycetes 203682|Planctomycetes O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD2_k127_1413387_2 886293.Sinac_3851 3.406e-82 280.0 COG1926@1|root,COG1926@2|Bacteria,2J36S@203682|Planctomycetes 203682|Planctomycetes F Phosphoribosyl transferase domain - - - ko:K07100 - - - - ko00000 - - - Pribosyltran DYD2_k127_1413387_16 395961.Cyan7425_2653 0.0001442 49.0 2E4KA@1|root,32ZF9@2|Bacteria,1G7KH@1117|Cyanobacteria 1117|Cyanobacteria S Family of unknown function (DUF5335) - - - - - - - - - - - - DUF5335 DYD2_k127_1413387_11 1487953.JMKF01000043_gene2602 4.095e-37 146.0 COG0783@1|root,COG0783@2|Bacteria,1G4ZH@1117|Cyanobacteria,1HF68@1150|Oscillatoriales 1117|Cyanobacteria P Ferritin-like domain - - - ko:K04047 - - - - ko00000,ko03036 - - - Ferritin DYD2_k127_1413387_14 400682.PAC_15712215 1.606e-17 87.0 COG0666@1|root,KOG4369@1|root,KOG0504@2759|Eukaryota,KOG4369@2759|Eukaryota,38I05@33154|Opisthokonta,3BHRH@33208|Metazoa 33208|Metazoa T positive regulation of MDA-5 signaling pathway ANKRD17 GO:0000785,GO:0001568,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001817,GO:0001819,GO:0001944,GO:0001955,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0006275,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007005,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007346,GO:0007399,GO:0007423,GO:0007492,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010506,GO:0010507,GO:0010556,GO:0010564,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010927,GO:0010941,GO:0012505,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0021700,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030239,GO:0031032,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031430,GO:0031672,GO:0031674,GO:0031965,GO:0031967,GO:0031975,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032989,GO:0033043,GO:0039531,GO:0039533,GO:0039535,GO:0040011,GO:0042692,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043122,GO:0043123,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043900,GO:0043902,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0045214,GO:0045595,GO:0045596,GO:0045787,GO:0045931,GO:0046530,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051146,GO:0051147,GO:0051148,GO:0051150,GO:0051151,GO:0051171,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055001,GO:0055002,GO:0060255,GO:0060361,GO:0060548,GO:0061061,GO:0065007,GO:0070925,GO:0071695,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090596,GO:0097435,GO:0098542,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1900245,GO:1900246,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902531,GO:1902533,GO:1902806,GO:1902808,GO:1903146,GO:1903147,GO:2000045,GO:2000112 - ko:K16726 - - - - ko00000,ko03036 - - - Ank_2,Ank_4,KH_1 DYD2_k127_1413387_5 2340.JV46_20180 1.031e-59 212.0 2C8PG@1|root,32RMK@2|Bacteria,1N0UQ@1224|Proteobacteria,1SBBP@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1413387_1 204669.Acid345_2716 2.47e-130 452.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria 2|Bacteria U Involved in the tonB-independent uptake of proteins - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PD40,Pkinase,WD40 DYD2_k127_1413387_15 1379270.AUXF01000001_gene2436 5.65e-09 57.0 COG1595@1|root,COG1595@2|Bacteria,1ZV2D@142182|Gemmatimonadetes 142182|Gemmatimonadetes K ECF sigma factor - - - - - - - - - - - - Sigma70_ECF DYD2_k127_1413387_6 502025.Hoch_1576 3.157e-48 177.0 COG1595@1|root,COG1595@2|Bacteria,1RINW@1224|Proteobacteria,4385N@68525|delta/epsilon subdivisions,2X3FI@28221|Deltaproteobacteria,2YVVV@29|Myxococcales 28221|Deltaproteobacteria K ECF sigma factor - - - - - - - - - - - - Sigma70_ECF DYD2_k127_1418697_1 1007103.AFHW01000032_gene2261 3.018e-41 168.0 COG1874@1|root,COG1874@2|Bacteria,1UIWU@1239|Firmicutes,4HCA7@91061|Bacilli,26UV7@186822|Paenibacillaceae 91061|Bacilli G Glycoside hydrolase - - - - - - - - - - - - Glyco_hydro_42 DYD2_k127_1418697_0 1313421.JHBV01000003_gene663 6.576e-181 581.0 COG3537@1|root,COG3537@2|Bacteria,4NDYB@976|Bacteroidetes,1IQP1@117747|Sphingobacteriia 976|Bacteroidetes G Chitobiase/beta-hexosaminidase C-terminal domain - - - - - - - - - - - - CHB_HEX_C_1,F5_F8_type_C,Fn3_assoc,Glyco_hydro_92 DYD2_k127_1423215_2 1280380.KR100_05235 3.081e-12 77.0 COG1266@1|root,COG1266@2|Bacteria,1G0ZJ@1117|Cyanobacteria,1GZ8P@1129|Synechococcus 1117|Cyanobacteria S metal-dependent membrane protease - - - ko:K07052 - - - - ko00000 - - - Abi DYD2_k127_1423215_1 1347392.CCEZ01000043_gene455 7.809e-39 151.0 COG0494@1|root,COG0494@2|Bacteria,1V6F5@1239|Firmicutes,24JFS@186801|Clostridia,36ITW@31979|Clostridiaceae 186801|Clostridia L nudix family nudF - 3.6.1.13 ko:K01515 ko00230,map00230 - R01054 RC00002 ko00000,ko00001,ko01000 - - - NUDIX DYD2_k127_1423215_0 240015.ACP_2169 3.035e-64 233.0 COG0285@1|root,COG0285@2|Bacteria,3Y3ZA@57723|Acidobacteria,2JI7I@204432|Acidobacteriia 204432|Acidobacteriia H PFAM Mur ligase - - 6.3.2.12,6.3.2.17 ko:K11754 ko00790,ko01100,map00790,map01100 M00126,M00841 R00942,R02237,R04241 RC00064,RC00090,RC00162 ko00000,ko00001,ko00002,ko01000 - - - Mur_ligase_C,Mur_ligase_M DYD2_k127_1435963_0 1382359.JIAL01000001_gene2922 0.0 1496.0 COG0086@1|root,COG0086@2|Bacteria,3Y2FZ@57723|Acidobacteria,2JIW0@204432|Acidobacteriia 204432|Acidobacteriia K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC - 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 DYD2_k127_1443744_3 1280952.HJA_04381 7.548e-25 114.0 2EPG8@1|root,33H2V@2|Bacteria,1Q81Y@1224|Proteobacteria,2V792@28211|Alphaproteobacteria,44045@69657|Hyphomonadaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1443744_2 264462.Bd0320 2.268e-27 114.0 COG0724@1|root,COG0724@2|Bacteria,1N6VR@1224|Proteobacteria,42V9Q@68525|delta/epsilon subdivisions,2MUCZ@213481|Bdellovibrionales,2WRRT@28221|Deltaproteobacteria 213481|Bdellovibrionales S PFAM RNP-1 like RNA-binding protein - - - - - - - - - - - - RRM_1 DYD2_k127_1443744_4 1121472.AQWN01000005_gene2434 3.988e-16 81.0 COG0724@1|root,COG0724@2|Bacteria,1VBMH@1239|Firmicutes,24NVR@186801|Clostridia,262F2@186807|Peptococcaceae 186801|Clostridia S PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - - - - - - - - - - RRM_1 DYD2_k127_1443744_0 1415756.JQMY01000005_gene34 3.969e-74 258.0 28MWZ@1|root,2ZB46@2|Bacteria,1R7K6@1224|Proteobacteria,2U4ZP@28211|Alphaproteobacteria,2PFK3@252301|Oceanicola 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1443744_5 290318.Cvib_0162 3.755e-10 63.0 COG0724@1|root,COG0724@2|Bacteria,1FE64@1090|Chlorobi 1090|Chlorobi S PFAM RNP-1 like RNA-binding protein - - - - - - - - - - - - RRM_1 DYD2_k127_1443744_1 1123514.KB905899_gene731 4.298e-34 131.0 COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,1SCA7@1236|Gammaproteobacteria,4619X@72273|Thiotrichales 72273|Thiotrichales K 'Cold-shock' DNA-binding domain cspC - - ko:K03704 - - - - ko00000,ko03000 - - - CSD DYD2_k127_1455834_1 1267535.KB906767_gene2749 1.149e-109 362.0 COG3620@1|root,COG3620@2|Bacteria,3Y6X6@57723|Acidobacteria 57723|Acidobacteria K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_3 DYD2_k127_1455834_3 1267534.KB906760_gene1554 7.517e-27 114.0 2DD3Z@1|root,2ZGDH@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1455834_0 331869.BAL199_28440 8.003e-175 553.0 COG0330@1|root,COG0330@2|Bacteria,1MUM2@1224|Proteobacteria,2TRTP@28211|Alphaproteobacteria,4BP7N@82117|unclassified Alphaproteobacteria 28211|Alphaproteobacteria O HflC and HflK could encode or regulate a protease hflK - - ko:K04088 - M00742 - - ko00000,ko00002,ko01000 - - - Band_7,HflK_N DYD2_k127_1455834_2 631362.Thi970DRAFT_04763 4.643e-92 304.0 COG0330@1|root,COG0330@2|Bacteria,1MV7R@1224|Proteobacteria,1RMF2@1236|Gammaproteobacteria,1X0ZR@135613|Chromatiales 135613|Chromatiales O HflC and HflK could regulate a protease - - - - - - - - - - - - Band_7 DYD2_k127_1456432_2 637390.AFOH01000120_gene536 2.613e-10 61.0 COG0532@1|root,COG0532@2|Bacteria,1MV26@1224|Proteobacteria,1RM9X@1236|Gammaproteobacteria,2NCI0@225057|Acidithiobacillales 225057|Acidithiobacillales J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex infB - - ko:K02519 - - - - ko00000,ko03012,ko03029 - - - GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc DYD2_k127_1456432_0 1382359.JIAL01000001_gene1877 2.811e-177 582.0 COG0532@1|root,COG0532@2|Bacteria,3Y3UG@57723|Acidobacteria,2JHXH@204432|Acidobacteriia 204432|Acidobacteriia J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex infB - - ko:K02519 - - - - ko00000,ko03012,ko03029 - - - GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N DYD2_k127_1456432_1 234267.Acid_5180 1.532e-110 381.0 COG0195@1|root,COG0195@2|Bacteria,3Y379@57723|Acidobacteria 57723|Acidobacteria K Participates in both transcription termination and antitermination nusA - - ko:K02600 - - - - ko00000,ko03009,ko03021 - - - HHH_5,KH_5,NusA_N,S1 DYD2_k127_1462784_3 861299.J421_6266 2.617e-104 344.0 COG2211@1|root,COG2211@2|Bacteria,1ZUJ2@142182|Gemmatimonadetes 142182|Gemmatimonadetes G MFS/sugar transport protein - - - ko:K16211 - - - - ko00000,ko02000 2.A.2.6 - - MFS_1 DYD2_k127_1462784_4 1449063.JMLS01000019_gene5698 9.159e-36 147.0 COG4221@1|root,COG4221@2|Bacteria,1V9C1@1239|Firmicutes,4ISDS@91061|Bacilli,26S84@186822|Paenibacillaceae 91061|Bacilli S Belongs to the short-chain dehydrogenases reductases (SDR) family fabG - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short DYD2_k127_1462784_0 861299.J421_6259 7.292e-197 633.0 COG0366@1|root,COG0366@2|Bacteria,1ZUGN@142182|Gemmatimonadetes 142182|Gemmatimonadetes G Cyclomaltodextrinase, N-terminal - - 3.2.1.135 ko:K21575 - - - - ko00000,ko01000 - GH13 - Alpha-amylase,Cyc-maltodext_N DYD2_k127_1462784_1 357808.RoseRS_1575 6.259e-185 592.0 COG1640@1|root,COG1640@2|Bacteria,2G668@200795|Chloroflexi,376Q1@32061|Chloroflexia 32061|Chloroflexia G PFAM glycoside hydrolase, family 77 - - 2.4.1.25 ko:K00705 ko00500,ko01100,map00500,map01100 - R05196 RC00049 ko00000,ko00001,ko01000 - GH77 - Glyco_hydro_77 DYD2_k127_1462784_5 1297581.H919_11594 5.064e-05 49.0 COG0366@1|root,COG0366@2|Bacteria,1UJZV@1239|Firmicutes,4ITG4@91061|Bacilli 91061|Bacilli G S-layer homology domain - - - - - - - - - - - - SLH DYD2_k127_1462784_2 861299.J421_6259 1.325e-129 424.0 COG0366@1|root,COG0366@2|Bacteria,1ZUGN@142182|Gemmatimonadetes 142182|Gemmatimonadetes G Cyclomaltodextrinase, N-terminal - - 3.2.1.135 ko:K21575 - - - - ko00000,ko01000 - GH13 - Alpha-amylase,Cyc-maltodext_N DYD2_k127_1462905_1 756067.MicvaDRAFT_0620 4.757e-157 512.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H9U8@1150|Oscillatoriales 1117|Cyanobacteria Q Taurine catabolism dioxygenase TauD, TfdA - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,TauD,Thioesterase DYD2_k127_1462905_0 65393.PCC7424_5753 0.0 1144.0 COG1020@1|root,COG1020@2|Bacteria,1G0NN@1117|Cyanobacteria,3KJDW@43988|Cyanothece 1117|Cyanobacteria Q amino acid adenylation - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding DYD2_k127_1463225_1 640511.BC1002_4772 2.531e-50 181.0 COG0526@1|root,COG0526@2|Bacteria,1RA5V@1224|Proteobacteria,2VQX7@28216|Betaproteobacteria,1KFIZ@119060|Burkholderiaceae 28216|Betaproteobacteria CO Thioredoxin-like - - - - - - - - - - - - AhpC-TSA,Redoxin DYD2_k127_1463225_3 240292.Ava_C0154 8.603e-13 70.0 28IG1@1|root,2Z8HJ@2|Bacteria,1G0EA@1117|Cyanobacteria,1HJM2@1161|Nostocales 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_1463225_4 247490.KSU1_D0810 4.278e-08 58.0 COG4974@1|root,COG4974@2|Bacteria 2|Bacteria L Belongs to the 'phage' integrase family - - - ko:K04763 - - - - ko00000,ko03036 - - - Arm-DNA-bind_3,Phage_int_SAM_1,Phage_integrase DYD2_k127_1463225_2 1266914.ATUK01000014_gene2249 1.925e-14 76.0 COG4861@1|root,COG4861@2|Bacteria,1RFGZ@1224|Proteobacteria,1S42X@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Transcriptional regulator, AbiEi antitoxin, Type IV TA system - - - - - - - - - - - - AbiEi_2 DYD2_k127_1463225_5 234267.Acid_3225 0.0002799 46.0 COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria 2|Bacteria S cAMP biosynthetic process - - - - - - - - - - - - TPR_11,TPR_16,TPR_19,TPR_8,Trans_reg_C DYD2_k127_1463225_0 398767.Glov_2840 1.148e-64 229.0 COG3177@1|root,COG3177@2|Bacteria,1NB0K@1224|Proteobacteria,42QY1@68525|delta/epsilon subdivisions,2WMXE@28221|Deltaproteobacteria 28221|Deltaproteobacteria K PFAM filamentation induced by cAMP protein Fic - - - - - - - - - - - - Fic DYD2_k127_1464457_4 234267.Acid_4384 2.565e-64 231.0 COG3794@1|root,COG3794@2|Bacteria,3Y4A0@57723|Acidobacteria 57723|Acidobacteria C PFAM blue (type 1) copper domain protein - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_1464457_0 234267.Acid_4385 4.643e-320 1016.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - - - - - - - - - - Cytochrom_C,PA14 DYD2_k127_1464457_3 234267.Acid_4386 5.895e-133 433.0 COG1290@1|root,COG1290@2|Bacteria 2|Bacteria C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - - - - - - - - - - Cytochrom_B_C DYD2_k127_1464457_2 234267.Acid_4387 2.012e-145 466.0 COG1290@1|root,COG1290@2|Bacteria 2|Bacteria C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - - - - - - - - - - Cytochrom_B_C,Cytochrome_B DYD2_k127_1464457_5 234267.Acid_4388 1.159e-42 165.0 COG0723@1|root,COG0723@2|Bacteria 2|Bacteria C oxidoreductase activity, acting on diphenols and related substances as donors - - 1.10.9.1 ko:K02636,ko:K03886 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00151,M00162 R03817,R08409 RC01002 ko00000,ko00001,ko00002,ko00194,ko01000 - - - Rieske DYD2_k127_1464457_6 1385514.N782_09820 3.026e-09 61.0 COG0695@1|root,COG0695@2|Bacteria,1VHHY@1239|Firmicutes,4I9WG@91061|Bacilli,2YAXF@289201|Pontibacillus 91061|Bacilli O Glutaredoxin - - - - - - - - - - - - DUF836 DYD2_k127_1464457_1 234267.Acid_4317 9.631e-187 599.0 COG5276@1|root,COG5276@2|Bacteria 2|Bacteria - - - - - ko:K17285 - - - - ko00000,ko04147 - - - LVIVD,SBP56 DYD2_k127_1465107_0 1499967.BAYZ01000016_gene6509 3.364e-65 247.0 COG5009@1|root,COG5009@2|Bacteria,2NS4K@2323|unclassified Bacteria 2|Bacteria M Transglycosylase mrcA GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0008955,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042546,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 iAF987.Gmet_0354 PCB_OB,Transgly,Transpeptidase DYD2_k127_1471544_8 329726.AM1_4076 3.523e-18 87.0 COG1413@1|root,COG1413@2|Bacteria,1G5VR@1117|Cyanobacteria 1117|Cyanobacteria C HEAT repeats - - - - - - - - - - - - HEAT_2 DYD2_k127_1471544_5 329726.AM1_4076 4.287e-24 107.0 COG1413@1|root,COG1413@2|Bacteria,1G5VR@1117|Cyanobacteria 1117|Cyanobacteria C HEAT repeats - - - - - - - - - - - - HEAT_2 DYD2_k127_1471544_0 211165.AJLN01000078_gene408 1.362e-85 289.0 COG1794@1|root,COG1794@2|Bacteria,1G62D@1117|Cyanobacteria 1117|Cyanobacteria M Belongs to the aspartate glutamate racemases family - - 5.1.1.13 ko:K01779 ko00250,ko01054,map00250,map01054 - R00491 RC00302 ko00000,ko00001,ko01000 - - - Asp_Glu_race DYD2_k127_1471544_2 864702.OsccyDRAFT_1490 8.927e-53 191.0 COG3654@1|root,COG3654@2|Bacteria,1G781@1117|Cyanobacteria,1HBJW@1150|Oscillatoriales 1117|Cyanobacteria S Fic/DOC family - - - ko:K07341 - - - - ko00000,ko02048 - - - Fic DYD2_k127_1471544_7 383372.Rcas_2211 3.367e-18 87.0 2EP5I@1|root,33GS9@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1471544_9 65393.PCC7424_5049 4.44e-16 82.0 2C6B2@1|root,335GA@2|Bacteria,1GRBH@1117|Cyanobacteria,3KKV9@43988|Cyanothece 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_1471544_4 99598.Cal7507_2866 1.794e-27 113.0 COG2929@1|root,COG2929@2|Bacteria,1G92M@1117|Cyanobacteria,1HSNE@1161|Nostocales 1117|Cyanobacteria S Ribonuclease toxin, BrnT, of type II toxin-antitoxin system - - - ko:K09803 - - - - ko00000 - - - BrnT_toxin DYD2_k127_1471544_1 323261.Noc_1568 1.838e-53 190.0 COG2337@1|root,COG2337@2|Bacteria,1RIPH@1224|Proteobacteria,1S7VW@1236|Gammaproteobacteria,1WYQY@135613|Chromatiales 135613|Chromatiales L Toxic component of a toxin-antitoxin (TA) module - - - ko:K07171 - - - - ko00000,ko01000,ko02048 - - - PemK_toxin DYD2_k127_1471544_6 1541960.KQ78_02283 1.167e-21 95.0 2E9JM@1|root,333SG@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1471544_3 402777.KB235903_gene547 1.47e-32 128.0 2BXCR@1|root,2ZVFB@2|Bacteria,1GG9S@1117|Cyanobacteria,1HGNU@1150|Oscillatoriales 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_1479098_0 1173027.Mic7113_0525 6.769e-208 671.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G135@1117|Cyanobacteria,1H8D7@1150|Oscillatoriales 1117|Cyanobacteria M Tetratricopeptide repeat - - - - - - - - - - - - CHAT,TPR_12,TPR_7 DYD2_k127_1479098_1 234267.Acid_1618 2.984e-05 52.0 COG4916@1|root,COG4916@2|Bacteria 2|Bacteria S TIR domain - - - - - - - - - - - - TIR_2 DYD2_k127_1490849_0 240015.ACP_1006 1.219e-155 499.0 COG0626@1|root,COG0626@2|Bacteria,3Y2K5@57723|Acidobacteria,2JHVD@204432|Acidobacteriia 204432|Acidobacteriia E Cys/Met metabolism PLP-dependent enzyme - - 4.4.1.1,4.4.1.2,4.4.1.8 ko:K01760,ko:K17217 ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230 M00017,M00609 R00782,R01001,R01283,R01286,R02408,R04941 RC00056,RC00069,RC00348,RC00382,RC00487,RC00488,RC00710,RC01245,RC02303,RC02814 ko00000,ko00001,ko00002,ko01000 - - - Cys_Met_Meta_PP DYD2_k127_1490849_2 1267534.KB906755_gene4634 7.802e-101 337.0 COG0031@1|root,COG0031@2|Bacteria,3Y39Y@57723|Acidobacteria,2JJ08@204432|Acidobacteriia 204432|Acidobacteriia E Pyridoxal-phosphate dependent enzyme - - 2.5.1.47 ko:K01738 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03601,R04859 RC00020,RC02814,RC02821 ko00000,ko00001,ko00002,ko01000 - - - PALP DYD2_k127_1490849_3 572477.Alvin_3084 1.62e-25 112.0 COG0642@1|root,COG0745@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,1T216@1236|Gammaproteobacteria,1X2RD@135613|Chromatiales 135613|Chromatiales T PFAM ATP-binding region, ATPase domain protein - - - - - - - - - - - - HATPase_c,HisKA,Response_reg DYD2_k127_1490849_1 1029823.AFIE01000053_gene1073 4.244e-132 433.0 COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,1RPE8@1236|Gammaproteobacteria,3NM33@468|Moraxellaceae 1236|Gammaproteobacteria G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - GSDH DYD2_k127_1496033_0 1502851.FG93_00182 3.044e-182 597.0 COG0642@1|root,COG2203@1|root,COG5002@1|root,COG2203@2|Bacteria,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,2TX3Q@28211|Alphaproteobacteria 28211|Alphaproteobacteria T Histidine kinase-like ATPases - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,Hpt,Response_reg,dCache_1 DYD2_k127_1497238_0 1125863.JAFN01000001_gene2933 1.557e-51 186.0 COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,42MH7@68525|delta/epsilon subdivisions,2WK12@28221|Deltaproteobacteria 28221|Deltaproteobacteria C electron transfer flavoprotein, alpha subunit - - - ko:K03522 - - - - ko00000,ko04147 - - - ETF,ETF_alpha DYD2_k127_1497238_1 105420.BBPO01000001_gene55 1.501e-14 83.0 2A6YK@1|root,30VTJ@2|Bacteria,2IJ81@201174|Actinobacteria,2NKRK@228398|Streptacidiphilus 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_1497238_2 1205908.AKXW01000117_gene1554 1.226e-09 64.0 COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,1RMTU@1236|Gammaproteobacteria,1XSCZ@135623|Vibrionales 135623|Vibrionales M udp-glucose 4-epimerase galE - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd DYD2_k127_1509234_1 489825.LYNGBM3L_40090 1.526e-62 221.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups PIGA - - ko:K00713,ko:K06338 - - - - ko00000,ko01000,ko01003,ko01005 - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_1509234_2 1027273.GZ77_24090 2.896e-49 186.0 COG3774@1|root,COG3774@2|Bacteria,1PWYJ@1224|Proteobacteria,1SA13@1236|Gammaproteobacteria 1236|Gammaproteobacteria M pathogenesis - - - - - - - - - - - - Gb3_synth,Gly_transf_sug DYD2_k127_1509234_3 313589.JNB_18903 9.11e-29 120.0 COG0251@1|root,COG0251@2|Bacteria,2IFCR@201174|Actinobacteria,4FI4A@85021|Intrasporangiaceae 201174|Actinobacteria J Endoribonuclease L-PSP psp1 - 3.5.99.10 ko:K09022 - - R11098,R11099 RC03275,RC03354 ko00000,ko01000 - - - Ribonuc_L-PSP DYD2_k127_1509234_0 489825.LYNGBM3L_40990 1.001e-97 331.0 COG2141@1|root,COG2141@2|Bacteria,1G1C0@1117|Cyanobacteria,1HEYU@1150|Oscillatoriales 1117|Cyanobacteria C Luciferase-like monooxygenase ssuD - 1.14.14.5 ko:K04091 ko00920,map00920 - R07210,R10206 RC01779,RC02556 ko00000,ko00001,ko01000 - - - Bac_luciferase DYD2_k127_1514542_1 867900.Celly_0896 1.143e-08 61.0 COG1524@1|root,COG1524@2|Bacteria,4NFFG@976|Bacteroidetes,1HX3P@117743|Flavobacteriia 976|Bacteroidetes S type I phosphodiesterase nucleotide pyrophosphatase - - - - - - - - - - - - Phosphodiest DYD2_k127_1514542_0 234267.Acid_0272 1.193e-153 502.0 COG0367@1|root,COG0367@2|Bacteria,3Y75N@57723|Acidobacteria 57723|Acidobacteria E Asparagine synthase - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_1526558_0 272134.KB731325_gene527 4.277e-127 431.0 COG0642@1|root,COG0784@1|root,COG2202@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,1G09B@1117|Cyanobacteria,1H7T9@1150|Oscillatoriales 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_1532321_1 103690.17132441 2.995e-10 74.0 COG2931@1|root,COG2931@2|Bacteria,1GQCK@1117|Cyanobacteria,1HRWX@1161|Nostocales 1117|Cyanobacteria Q Peptidase M10 serralysin C terminal - - 3.4.24.40 ko:K01406 ko01503,map01503 - - - ko00000,ko00001,ko01000,ko01002 - - - Calx-beta,DUF4347,HemolysinCabind,VCBS DYD2_k127_1532321_0 1047013.AQSP01000131_gene1797 3.508e-55 218.0 COG0823@1|root,COG0823@2|Bacteria,2NPHZ@2323|unclassified Bacteria 2|Bacteria U WD40-like Beta Propeller Repeat - - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PD40 DYD2_k127_1533638_0 756067.MicvaDRAFT_1171 6.326e-178 597.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G135@1117|Cyanobacteria,1H8D7@1150|Oscillatoriales 1117|Cyanobacteria M Tetratricopeptide repeat - - - - - - - - - - - - CHAT,TPR_12,TPR_7 DYD2_k127_1536696_7 589873.EP13_07640 0.0008379 49.0 2EEQU@1|root,338II@2|Bacteria,1NFHI@1224|Proteobacteria,1SE3F@1236|Gammaproteobacteria,468EV@72275|Alteromonadaceae 1236|Gammaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_1536696_6 1396141.BATP01000060_gene4690 6.556e-26 108.0 COG1141@1|root,COG1141@2|Bacteria,46T2D@74201|Verrucomicrobia,2IURJ@203494|Verrucomicrobiae 203494|Verrucomicrobiae C 4Fe-4S single cluster domain of Ferredoxin I - - - - - - - - - - - - Fer4_13 DYD2_k127_1536696_0 1118058.CAGY01000001_gene597 6.313e-188 597.0 COG0114@1|root,COG0114@2|Bacteria,2GKWY@201174|Actinobacteria,4D3ID@85005|Actinomycetales 201174|Actinobacteria C Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate fumC - 4.2.1.2 ko:K01679 ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211 M00009,M00011,M00173,M00376 R01082 RC00443 ko00000,ko00001,ko00002,ko01000 - - - FumaraseC_C,Lyase_1 DYD2_k127_1536696_5 378806.STAUR_4296 3.655e-37 146.0 COG0745@1|root,COG0745@2|Bacteria,1P6A4@1224|Proteobacteria,4333R@68525|delta/epsilon subdivisions,2WY7A@28221|Deltaproteobacteria 28221|Deltaproteobacteria KT cheY-homologous receiver domain - - - - - - - - - - - - Response_reg DYD2_k127_1536696_2 33876.JNXY01000015_gene7455 9.838e-106 359.0 COG0467@1|root,COG0467@2|Bacteria,2I58C@201174|Actinobacteria,4DH7N@85008|Micromonosporales 201174|Actinobacteria T Circadian clock protein KaiC - - - ko:K08482 - - - - ko00000 - - - ATPase DYD2_k127_1536696_1 1173022.Cri9333_2051 3.456e-145 490.0 COG0642@1|root,COG0745@1|root,COG3829@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3829@2|Bacteria,1G09B@1117|Cyanobacteria,1HENR@1150|Oscillatoriales 1117|Cyanobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - DUF4118,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_1536696_3 1210884.HG799472_gene14912 1.919e-46 170.0 COG0607@1|root,COG0607@2|Bacteria,2IZWR@203682|Planctomycetes 203682|Planctomycetes P Rhodanese Homology Domain - - - - - - - - - - - - Rhodanese DYD2_k127_1536696_4 378806.STAUR_4671 1.659e-45 169.0 COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,42N8Y@68525|delta/epsilon subdivisions,2WIR7@28221|Deltaproteobacteria,2YTYX@29|Myxococcales 28221|Deltaproteobacteria C dihydrolipoamide dehydrogenase lpdA - 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pyr_redox_2,Pyr_redox_dim DYD2_k127_1538321_0 379066.GAU_0593 5.308e-152 490.0 COG1239@1|root,COG1239@2|Bacteria,1ZT0R@142182|Gemmatimonadetes 142182|Gemmatimonadetes H Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX - - 6.6.1.1 ko:K03405 ko00860,ko01100,ko01110,map00860,map01100,map01110 - R03877 RC01012 ko00000,ko00001,ko01000 - - - - DYD2_k127_1538321_1 234267.Acid_2209 2.73e-103 345.0 COG4867@1|root,COG4867@2|Bacteria,3Y2VU@57723|Acidobacteria 57723|Acidobacteria S von Willebrand factor (vWF) type A domain - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA_2 DYD2_k127_1539679_0 1267534.KB906758_gene2303 2.154e-181 608.0 COG1629@1|root,COG4771@2|Bacteria,3Y77Y@57723|Acidobacteria,2JKVG@204432|Acidobacteriia 204432|Acidobacteriia P TonB dependent receptor - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_1539866_0 357808.RoseRS_2094 2.667e-130 432.0 COG0318@1|root,COG0318@2|Bacteria,2G7VC@200795|Chloroflexi 200795|Chloroflexi IQ AMP-binding enzyme C-terminal domain - - 6.2.1.3 ko:K00666,ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C DYD2_k127_1539866_2 868595.Desca_1044 9.637e-45 174.0 COG2215@1|root,COG2215@2|Bacteria,1VA77@1239|Firmicutes 1239|Firmicutes S PFAM Nickel cobalt transporter, high-affinity ureH - - - - - - - - - - - DsbD_2 DYD2_k127_1539866_1 266265.Bxe_C0538 6.604e-82 278.0 COG0309@1|root,COG0309@2|Bacteria,1MVCC@1224|Proteobacteria,2VH3K@28216|Betaproteobacteria,1K3J9@119060|Burkholderiaceae 28216|Betaproteobacteria O hydrogenase expression formation protein HypE - - - ko:K04655 - - - - ko00000 - - - AIRS,AIRS_C DYD2_k127_1541828_1 324925.Ppha_1164 1.133e-86 290.0 COG0330@1|root,COG0330@2|Bacteria,1FE5T@1090|Chlorobi 1090|Chlorobi O PFAM band 7 protein - - - - - - - - - - - - Band_7 DYD2_k127_1541828_0 1340493.JNIF01000004_gene141 8.043e-92 309.0 COG3861@1|root,COG3861@2|Bacteria 2|Bacteria S electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - - - - - - - - - - PRC DYD2_k127_1541828_2 886293.Sinac_1926 8.685e-18 85.0 COG1011@1|root,COG1011@2|Bacteria,2J05I@203682|Planctomycetes 203682|Planctomycetes GK Haloacid dehalogenase-like hydrolase - - - ko:K07025 - - - - ko00000 - - - HAD_2 DYD2_k127_1544987_0 1125863.JAFN01000001_gene381 2.399e-79 278.0 COG2199@1|root,COG3706@2|Bacteria,1REEI@1224|Proteobacteria,42RTM@68525|delta/epsilon subdivisions 1224|Proteobacteria T PFAM GGDEF domain containing protein - - - - - - - - - - - - GAF_2,GGDEF,HAMP DYD2_k127_1544987_1 1499967.BAYZ01000100_gene3454 0.0001766 53.0 2EVWS@1|root,33PAF@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1548828_8 411477.PARMER_02950 4.851e-05 46.0 COG3153@1|root,COG3153@2|Bacteria,4NP1G@976|Bacteroidetes,2FNXX@200643|Bacteroidia,22YGC@171551|Porphyromonadaceae 976|Bacteroidetes S Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_9,Zn_ribbon_2 DYD2_k127_1548828_6 1121015.N789_08235 9.875e-17 87.0 COG0457@1|root,COG0457@2|Bacteria,1N9D5@1224|Proteobacteria,1SAKR@1236|Gammaproteobacteria,1XATQ@135614|Xanthomonadales 135614|Xanthomonadales S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_1548828_0 234267.Acid_0026 1.197e-64 227.0 COG0262@1|root,COG0262@2|Bacteria,3Y77U@57723|Acidobacteria 57723|Acidobacteria H RibD C-terminal domain - - - - - - - - - - - - RibD_C DYD2_k127_1548828_7 926560.KE387027_gene526 1.71e-05 48.0 COG0457@1|root,COG0457@2|Bacteria 926560.KE387027_gene526|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_1548828_3 523791.Kkor_2400 3.5e-20 95.0 COG0457@1|root,COG0457@2|Bacteria,1N9D5@1224|Proteobacteria,1SAKR@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_1548828_4 118161.KB235922_gene4388 5.475e-20 92.0 COG2890@1|root,COG2890@2|Bacteria,1G6DS@1117|Cyanobacteria 1117|Cyanobacteria J Methyltransferase domain - - - - - - - - - - - - Methyltransf_25 DYD2_k127_1548828_5 573064.Mefer_1134 1.643e-18 95.0 COG0842@1|root,arCOG01467@2157|Archaea,2XU41@28890|Euryarchaeota,23QKN@183939|Methanococci 183939|Methanococci P TIGRFAM daunorubicin resistance ABC transporter, inner membrane subunit B - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane DYD2_k127_1548828_1 1227352.C173_31741 6.055e-53 198.0 COG1131@1|root,COG1131@2|Bacteria,1TPJE@1239|Firmicutes,4HB5U@91061|Bacilli,26SG2@186822|Paenibacillaceae 91061|Bacilli V ABC transporter drrA - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran,DUF4162 DYD2_k127_1548828_2 1144275.COCOR_02497 1.499e-32 129.0 COG2050@1|root,COG2050@2|Bacteria,1RK46@1224|Proteobacteria,42UJU@68525|delta/epsilon subdivisions,2WQI6@28221|Deltaproteobacteria,2YYTJ@29|Myxococcales 28221|Deltaproteobacteria Q Domain of unknown function (DUF4442) - - - - - - - - - - - - 4HBT DYD2_k127_1554302_0 1122604.JONR01000045_gene2500 2.165e-140 454.0 COG0604@1|root,COG0604@2|Bacteria,1MWBD@1224|Proteobacteria,1SZK5@1236|Gammaproteobacteria,1XCD9@135614|Xanthomonadales 135614|Xanthomonadales C Zinc-binding dehydrogenase - - - - - - - - - - - - ADH_N DYD2_k127_1554302_2 247490.KSU1_C0079 1.802e-21 95.0 2E90H@1|root,31X4M@2|Bacteria,2J4J2@203682|Planctomycetes 203682|Planctomycetes - - - - - - - - - - - - - - - DYD2_k127_1554302_1 765912.Thimo_1662 3.152e-23 100.0 2C1SS@1|root,32YN6@2|Bacteria,1NNFV@1224|Proteobacteria,1SS40@1236|Gammaproteobacteria,1X173@135613|Chromatiales 135613|Chromatiales - - - - - - - - - - - - - - - DYD2_k127_1558735_0 682795.AciX8_2195 1.66e-42 159.0 COG1765@1|root,COG1765@2|Bacteria,3Y563@57723|Acidobacteria,2JJUX@204432|Acidobacteriia 204432|Acidobacteriia O OsmC-like protein - - - ko:K07397 - - - - ko00000 - - - OsmC DYD2_k127_1558735_1 1125863.JAFN01000001_gene644 4.185e-06 57.0 COG4105@1|root,COG4105@2|Bacteria,1QVQ9@1224|Proteobacteria,43CT2@68525|delta/epsilon subdivisions,2X80K@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_6 DYD2_k127_1558939_0 1234364.AMSF01000025_gene3704 9.161e-45 170.0 COG0471@1|root,COG3273@1|root,COG0471@2|Bacteria,COG3273@2|Bacteria,1MU0K@1224|Proteobacteria,1RMI1@1236|Gammaproteobacteria,1X4VE@135614|Xanthomonadales 135614|Xanthomonadales P Sodium:sulfate symporter transmembrane region - - - - - - - - - - - - CitMHS,Na_sulph_symp,TrkA_C DYD2_k127_1566807_1 1487953.JMKF01000037_gene3223 2.142e-09 71.0 COG0745@1|root,COG0745@2|Bacteria,1G027@1117|Cyanobacteria,1H7ZK@1150|Oscillatoriales 1117|Cyanobacteria T Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - Hpt,Response_reg,Trans_reg_C DYD2_k127_1566807_0 331113.SNE_A06750 3.982e-90 304.0 COG0664@1|root,COG1252@1|root,COG0664@2|Bacteria,COG1252@2|Bacteria,2JFCT@204428|Chlamydiae 2|Bacteria C Pyridine nucleotide-disulphide oxidoreductase ndh - 1.6.99.3 ko:K03885,ko:K10716 ko00190,map00190 - - - ko00000,ko00001,ko01000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Abhydrolase_6,CBS,Ion_trans,Pyr_redox_2,cNMP_binding DYD2_k127_1568073_1 40571.JOEA01000017_gene665 1.241e-08 65.0 COG0346@1|root,COG0346@2|Bacteria,2IIN9@201174|Actinobacteria,4E4EM@85010|Pseudonocardiales 201174|Actinobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - DUF4440,Glyoxalase DYD2_k127_1568073_0 926550.CLDAP_00310 3.512e-10 70.0 COG0715@1|root,COG0715@2|Bacteria,2G6E9@200795|Chloroflexi 200795|Chloroflexi P PFAM NMT1 THI5 like domain protein - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 DYD2_k127_1568963_1 234267.Acid_0067 7.158e-211 664.0 COG0174@1|root,COG0174@2|Bacteria 2|Bacteria E glutamine synthetase glnA GO:0001968,GO:0003674,GO:0003824,GO:0004356,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006541,GO:0006542,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009405,GO:0009605,GO:0009607,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016020,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019222,GO:0019752,GO:0019899,GO:0020012,GO:0030162,GO:0030312,GO:0030682,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0035375,GO:0040007,GO:0043207,GO:0043436,GO:0044044,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046394,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0070613,GO:0071704,GO:0071944,GO:0075136,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1903317,GO:1903319 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C,Gln-synt_N DYD2_k127_1568963_0 521674.Plim_3789 1.128e-237 751.0 COG1166@1|root,COG1166@2|Bacteria,2IX6P@203682|Planctomycetes 203682|Planctomycetes H Catalyzes the biosynthesis of agmatine from arginine speA - 4.1.1.19 ko:K01585 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N DYD2_k127_1568963_2 1379698.RBG1_1C00001G0709 1.094e-42 163.0 COG1899@1|root,COG1899@2|Bacteria,2NR8I@2323|unclassified Bacteria 2|Bacteria O Deoxyhypusine synthase - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009987,GO:0010467,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019538,GO:0034038,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564 2.5.1.46 ko:K00809 - - - - ko00000,ko01000 - - - DS DYD2_k127_1571488_1 388413.ALPR1_19768 5.579e-69 245.0 COG0380@1|root,COG1877@1|root,COG0380@2|Bacteria,COG1877@2|Bacteria,4NGJ4@976|Bacteroidetes,47KIQ@768503|Cytophagia 976|Bacteroidetes G Trehalose-phosphatase otsB - 2.4.1.15,3.1.3.12 ko:K16055 ko00500,ko01100,map00500,map01100 - R02737,R02778 RC00005,RC00017,RC00049,RC02748 ko00000,ko00001,ko01000,ko01003 - GT20 - Glyco_transf_20,Trehalose_PPase DYD2_k127_1571488_0 1128421.JAGA01000004_gene2674 3.56e-272 845.0 COG0366@1|root,COG0366@2|Bacteria,2NQND@2323|unclassified Bacteria 2|Bacteria G Maltogenic Amylase, C-terminal domain treS - 3.2.1.1,5.4.99.16 ko:K05343 ko00500,ko01100,map00500,map01100 - R01557,R02108,R02112,R11262 RC01816 ko00000,ko00001,ko01000 - GH13 - APH,Alpha-amylase,Malt_amylase_C DYD2_k127_1571488_2 1278078.G419_18190 1.022e-13 73.0 COG2197@1|root,COG3903@1|root,COG2197@2|Bacteria,COG3903@2|Bacteria,2GIZ1@201174|Actinobacteria,4FUTU@85025|Nocardiaceae 201174|Actinobacteria K activity, protein serine threonine kinase activity, protein-tyrosine kinase activity, ATP binding, regulation of transcription, DNA-dependent, protein amino acid phosphorylation - - - - - - - - - - - - AAA_22,GerE,NB-ARC DYD2_k127_1573687_2 883126.HMPREF9710_01170 5.19e-41 157.0 COG3861@1|root,COG4572@1|root,COG3861@2|Bacteria,COG4572@2|Bacteria,1MWBU@1224|Proteobacteria,2VR9U@28216|Betaproteobacteria,477EZ@75682|Oxalobacteraceae 28216|Betaproteobacteria S Cation transport regulator - - - - - - - - - - - - - DYD2_k127_1573687_5 592029.DDD_3351 5.052e-09 59.0 COG3237@1|root,COG3237@2|Bacteria,4PDUZ@976|Bacteroidetes,1IE8H@117743|Flavobacteriia,3HM8M@363408|Nonlabens 976|Bacteroidetes S CsbD-like - - - - - - - - - - - - CsbD DYD2_k127_1573687_0 1198114.AciX9_3738 2.351e-238 772.0 COG1629@1|root,COG4771@2|Bacteria,3Y42T@57723|Acidobacteria,2JIWF@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_1573687_1 1385513.N780_06200 4.972e-142 460.0 COG0183@1|root,COG0183@2|Bacteria,1TP07@1239|Firmicutes,4H9RJ@91061|Bacilli,2Y8N8@289201|Pontibacillus 91061|Bacilli I Belongs to the thiolase family - - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N DYD2_k127_1573687_3 1267533.KB906734_gene3891 8.779e-41 161.0 COG1714@1|root,COG1714@2|Bacteria 2|Bacteria S RDD family - - - - - - - - - - - - RDD DYD2_k127_1573687_4 1382356.JQMP01000003_gene1986 3.336e-40 163.0 COG3429@1|root,COG3429@2|Bacteria,2G6ZV@200795|Chloroflexi,27Y92@189775|Thermomicrobia 189775|Thermomicrobia G Glucose-6-phosphate dehydrogenase subunit - - - - - - - - - - - - OpcA_G6PD_assem DYD2_k127_1587018_1 189753.AXAS01000041_gene2534 4.707e-35 135.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1587018_0 1343739.PAP_00255 5.114e-82 291.0 COG0402@1|root,arCOG00695@2157|Archaea,2XTJS@28890|Euryarchaeota,242MF@183968|Thermococci 183968|Thermococci F Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine mtaD - 3.5.4.28,3.5.4.31 ko:K12960 ko00270,ko01100,map00270,map01100 - R09660 RC00477 ko00000,ko00001,ko01000 - - - Amidohydro_1 DYD2_k127_1587018_3 118161.KB235922_gene3802 1.096e-15 81.0 COG0662@1|root,COG0662@2|Bacteria,1GDUY@1117|Cyanobacteria 1117|Cyanobacteria G Cupin domain - - - - - - - - - - - - Cupin_2 DYD2_k127_1587018_2 266265.Bxe_C0294 2.752e-31 132.0 COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2VJ55@28216|Betaproteobacteria,1JZU0@119060|Burkholderiaceae 28216|Betaproteobacteria H acetolactate synthase - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N DYD2_k127_1597241_4 1288494.EBAPG3_29930 1.261e-40 153.0 COG0199@1|root,COG0199@2|Bacteria,1MZDT@1224|Proteobacteria,2VSVX@28216|Betaproteobacteria,373HJ@32003|Nitrosomonadales 28216|Betaproteobacteria J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site rpsN - - ko:K02954 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S14 DYD2_k127_1597241_0 265072.Mfla_0291 6.928e-91 305.0 COG0094@1|root,COG0094@2|Bacteria,1MUU9@1224|Proteobacteria,2VHCP@28216|Betaproteobacteria,2KKCF@206350|Nitrosomonadales 206350|Nitrosomonadales J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits rplE - - ko:K02931 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L5,Ribosomal_L5_C DYD2_k127_1597241_3 159087.Daro_0330 5.968e-45 170.0 COG0198@1|root,COG0198@2|Bacteria,1MZQD@1224|Proteobacteria,2VUC6@28216|Betaproteobacteria,2KWPF@206389|Rhodocyclales 206389|Rhodocyclales J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit rplX - - ko:K02895 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KOW,ribosomal_L24 DYD2_k127_1597241_2 395495.Lcho_3939 3.797e-67 229.0 COG0093@1|root,COG0093@2|Bacteria,1RCWZ@1224|Proteobacteria,2VR2N@28216|Betaproteobacteria,1KM02@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome rplN - - ko:K02874 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L14 DYD2_k127_1597241_5 582744.Msip34_0310 2.061e-33 130.0 COG0186@1|root,COG0186@2|Bacteria,1MZIK@1224|Proteobacteria,2VU2G@28216|Betaproteobacteria,2KN30@206350|Nitrosomonadales 206350|Nitrosomonadales J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA rpsQ - - ko:K02961 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S17 DYD2_k127_1597241_6 556268.OFAG_01968 4.492e-19 87.0 COG0255@1|root,COG0255@2|Bacteria,1N6PR@1224|Proteobacteria,2VVNT@28216|Betaproteobacteria,4752D@75682|Oxalobacteraceae 28216|Betaproteobacteria J Belongs to the universal ribosomal protein uL29 family rpmC - - ko:K02904 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L29 DYD2_k127_1597241_1 76114.ebA3834 4.206e-72 246.0 COG0197@1|root,COG0197@2|Bacteria,1RA0Z@1224|Proteobacteria,2VQ0A@28216|Betaproteobacteria,2KW4S@206389|Rhodocyclales 206389|Rhodocyclales J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs rplP - - ko:K02878 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L16 DYD2_k127_1597241_7 1288494.EBAPG3_29860 6.586e-12 66.0 COG0092@1|root,COG0092@2|Bacteria,1MUAI@1224|Proteobacteria,2VHQN@28216|Betaproteobacteria,372IY@32003|Nitrosomonadales 28216|Betaproteobacteria J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation rpsC - - ko:K02982 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KH_2,Ribosomal_S3_C DYD2_k127_1604669_1 682795.AciX8_1911 5.159e-34 139.0 COG1573@1|root,COG1573@2|Bacteria,3Y43G@57723|Acidobacteria,2JJ46@204432|Acidobacteriia 204432|Acidobacteriia L TIGRFAM Phage SPO1 DNA polymerase-related protein - - 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG DYD2_k127_1604669_0 1118054.CAGW01000032_gene626 8.258e-118 391.0 COG0452@1|root,COG0452@2|Bacteria,1TPP3@1239|Firmicutes,4HAK8@91061|Bacilli,26R8P@186822|Paenibacillaceae 91061|Bacilli H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine coaBC - 4.1.1.36,6.3.2.5 ko:K01598,ko:K13038 ko00770,ko01100,map00770,map01100 M00120 R03269,R04231 RC00064,RC00090,RC00822 ko00000,ko00001,ko00002,ko01000 - - - DFP,Flavoprotein DYD2_k127_1612404_0 682795.AciX8_0665 6.91e-219 692.0 COG2804@1|root,COG2804@2|Bacteria,3Y3GB@57723|Acidobacteria,2JHVF@204432|Acidobacteriia 204432|Acidobacteriia NU PFAM Type II secretion system protein E - - - ko:K02652 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE,T2SSE_N DYD2_k127_1612404_1 278963.ATWD01000001_gene4226 3.085e-77 273.0 COG1459@1|root,COG1459@2|Bacteria,3Y2X8@57723|Acidobacteria,2JHIX@204432|Acidobacteriia 204432|Acidobacteriia NU PFAM Type II secretion system F domain - - - ko:K02653 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSF DYD2_k127_1612404_2 204669.Acid345_2506 2.562e-68 245.0 COG2304@1|root,COG2304@2|Bacteria,3Y2IE@57723|Acidobacteria,2JI1J@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor (vWF) type A domain - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA,VWA_2 DYD2_k127_1612404_3 1267535.KB906767_gene623 2.84e-42 172.0 COG2304@1|root,COG2304@2|Bacteria,3Y2IE@57723|Acidobacteria,2JI1J@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor (vWF) type A domain - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA,VWA_2 DYD2_k127_161372_2 243231.GSU2043 4.776e-54 199.0 COG1989@1|root,COG1989@2|Bacteria,1MUZF@1224|Proteobacteria,42S2A@68525|delta/epsilon subdivisions,2WMQ8@28221|Deltaproteobacteria,43TK2@69541|Desulfuromonadales 28221|Deltaproteobacteria M Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue pilD - 3.4.23.43 ko:K02654 - M00331 - - ko00000,ko00002,ko01000,ko01002,ko02035,ko02044 3.A.15.2 - - DiS_P_DiS,Peptidase_A24 DYD2_k127_161372_1 204669.Acid345_1590 1.968e-58 221.0 COG4191@1|root,COG4191@2|Bacteria,3Y3X4@57723|Acidobacteria,2JING@204432|Acidobacteriia 2|Bacteria T Histidine kinase - - 2.7.13.3 ko:K02668,ko:K07708 ko02020,map02020 M00497,M00501 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - HATPase_c,HisKA,PAS,PAS_4,PAS_9,Response_reg,RsbRD_N DYD2_k127_161372_0 1279017.AQYJ01000029_gene3946 1.98e-62 220.0 COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,1RZ45@1236|Gammaproteobacteria,46C13@72275|Alteromonadaceae 1236|Gammaproteobacteria S Calcineurin-like phosphoesterase superfamily domain - - - ko:K07098 - - - - ko00000 - - - Metallophos,Metallophos_2 DYD2_k127_1616085_0 671143.DAMO_0621 0.0 1238.0 COG1452@1|root,COG1452@2|Bacteria 2|Bacteria M lipopolysaccharide transport - - - ko:K22110 - - - - ko00000,ko02000 1.B.35.1,1.B.35.2 - - Glyco_hydro_63 DYD2_k127_1620509_0 1303518.CCALI_00899 8.033e-167 537.0 COG0423@1|root,COG0423@2|Bacteria 2|Bacteria J glycyl-tRNA aminoacylation glyQS GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 ko:K01880 ko00970,map00970 M00359,M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - iSB619.SA_RS07880 HGTP_anticodon,tRNA-synt_2b DYD2_k127_1620509_1 1469245.JFBG01000027_gene1490 1.872e-86 299.0 COG0617@1|root,COG0617@2|Bacteria,1MU2X@1224|Proteobacteria,1RPFJ@1236|Gammaproteobacteria,1WWKR@135613|Chromatiales 135613|Chromatiales J Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases cca - 2.7.7.72 ko:K00974 ko03013,map03013 - R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016 - - - HD,PolyA_pol,PolyA_pol_RNAbd DYD2_k127_162165_1 1303518.CCALI_00532 1.339e-104 344.0 COG0476@1|root,COG0607@1|root,COG1977@1|root,COG0476@2|Bacteria,COG0607@2|Bacteria,COG1977@2|Bacteria 2|Bacteria H Mo-molybdopterin cofactor metabolic process moeB GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 ko:K03148,ko:K03636,ko:K21029,ko:K21147 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07459,R07461 RC00043 ko00000,ko00001,ko01000 - - - Rhodanese,ThiF,ThiS DYD2_k127_162165_0 234267.Acid_5526 4.838e-244 762.0 COG1032@1|root,COG1032@2|Bacteria,3Y2NI@57723|Acidobacteria 57723|Acidobacteria C SMART Elongator protein 3 MiaB NifB - - - - - - - - - - - - B12-binding,DUF4070,Radical_SAM DYD2_k127_1621707_1 525904.Tter_2339 1.399e-86 295.0 COG1914@1|root,COG1914@2|Bacteria,2NNYP@2323|unclassified Bacteria 2|Bacteria P Natural resistance-associated macrophage protein - - - - - - - - - - - iHN637.CLJU_RS07840 Nramp DYD2_k127_1621707_0 661478.OP10G_1859 7.92e-184 594.0 COG0574@1|root,COG0574@2|Bacteria 2|Bacteria G Belongs to the PEP-utilizing enzyme family - - 2.7.9.1,2.7.9.2 ko:K01006,ko:K01007 ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200 M00169,M00171,M00172,M00173,M00374 R00199,R00206 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PPDK_N DYD2_k127_1638101_1 675635.Psed_3497 1.192e-05 52.0 COG2823@1|root,COG2823@2|Bacteria,2IGN2@201174|Actinobacteria,4E5YI@85010|Pseudonocardiales 201174|Actinobacteria S bacterial OsmY and nodulation domain - - - - - - - - - - - - BON DYD2_k127_1638101_0 526227.Mesil_3175 5.638e-263 828.0 COG0474@1|root,COG0474@2|Bacteria,1WICW@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus P ATPase P-type (Transporting), HAD superfamily, subfamily IC pacL - 3.6.3.6,3.6.3.8 ko:K01535,ko:K01537 ko00190,map00190 - - - ko00000,ko00001,ko01000 3.A.3.2,3.A.3.3 - - Cation_ATPase,Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3 DYD2_k127_1646402_1 1133849.O3I_014700 3.462e-06 50.0 2C98M@1|root,2ZFXA@2|Bacteria,2HIR3@201174|Actinobacteria,4G4KF@85025|Nocardiaceae 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_1646402_0 62928.azo0278 8.685e-37 151.0 2EFNF@1|root,339EK@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1647533_4 1254432.SCE1572_00290 0.0002003 45.0 COG0517@1|root,COG0517@2|Bacteria,1QZT1@1224|Proteobacteria,43CN4@68525|delta/epsilon subdivisions,2X7VC@28221|Deltaproteobacteria,2Z3IG@29|Myxococcales 28221|Deltaproteobacteria S Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS DYD2_k127_1647533_2 991.IW20_13700 2.995e-29 122.0 COG2846@1|root,COG2846@2|Bacteria,4NE9M@976|Bacteroidetes,1HXS5@117743|Flavobacteriia,2NUSC@237|Flavobacterium 976|Bacteroidetes D Di-iron-containing protein involved in the repair of iron-sulfur clusters ric - - ko:K07322 - - - - ko00000 - - - Hemerythrin,ScdA_N DYD2_k127_1647533_0 1267535.KB906767_gene2899 6.557e-120 397.0 COG2223@1|root,COG2223@2|Bacteria,3Y4CF@57723|Acidobacteria 57723|Acidobacteria P nitrite transmembrane transporter activity - - - - - - - - - - - - MFS_1 DYD2_k127_1647533_3 1288826.MSNKSG1_16391 5.473e-22 96.0 COG1670@1|root,COG1670@2|Bacteria,1N9F9@1224|Proteobacteria,1SCFK@1236|Gammaproteobacteria 1236|Gammaproteobacteria J Protein of unknown function (DUF3565) - - - - - - - - - - - - DUF3565 DYD2_k127_1647533_1 1121422.AUMW01000002_gene2121 2.829e-31 125.0 COG1917@1|root,COG1917@2|Bacteria,1UHAE@1239|Firmicutes,24C81@186801|Clostridia 186801|Clostridia S Cupin domain protein - - - - - - - - - - - - Cupin_2 DYD2_k127_1649287_2 1121468.AUBR01000054_gene1455 1.195e-06 57.0 COG3287@1|root,COG3287@2|Bacteria,1VD3K@1239|Firmicutes,24B9D@186801|Clostridia,42FWF@68295|Thermoanaerobacterales 186801|Clostridia S FIST_C - - - - - - - - - - - - FIST,FIST_C DYD2_k127_1649287_0 945713.IALB_1883 6.652e-119 407.0 COG0265@1|root,COG2234@1|root,COG0265@2|Bacteria,COG2234@2|Bacteria 2|Bacteria DZ aminopeptidase activity - - - - - - - - - - - - PA,PD40,PDZ_2,Peptidase_M28 DYD2_k127_1649287_1 1379698.RBG1_1C00001G0407 4.642e-55 194.0 COG0823@1|root,COG0823@2|Bacteria,2NQA4@2323|unclassified Bacteria 2|Bacteria U Periplasmic component of the Tol biopolymer transport system tolB - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PA,PD40,PDZ_2,Peptidase_M28 DYD2_k127_1654467_2 1304877.KI519400_gene526 2.103e-16 94.0 COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JRZ3@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria G PQQ-like domain - - 1.1.9.1 ko:K17760 - - - - ko00000,ko01000 - - - Cytochrom_C,Cytochrome_CBB3,PQQ,PQQ_2 DYD2_k127_1654467_0 388413.ALPR1_06370 9.508e-96 334.0 2DBN3@1|root,2ZA1Q@2|Bacteria,4P0RE@976|Bacteroidetes,47TFM@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_1654467_1 937777.Deipe_2229 4.219e-47 178.0 COG0398@1|root,COG0398@2|Bacteria 2|Bacteria M Pfam SNARE associated Golgi protein - - - - - - - - - - - - SNARE_assoc DYD2_k127_1659968_1 644283.Micau_5154 5.413e-27 119.0 COG0477@1|root,COG2814@2|Bacteria,2HX42@201174|Actinobacteria,4D8CP@85008|Micromonosporales 201174|Actinobacteria EGP Major facilitator superfamily bacE - - - - - - - - - - - MFS_1,MFS_3 DYD2_k127_1659968_0 472759.Nhal_1699 2.362e-42 161.0 COG1611@1|root,COG3350@1|root,COG1611@2|Bacteria,COG3350@2|Bacteria,1R8EU@1224|Proteobacteria,1SKDD@1236|Gammaproteobacteria 1236|Gammaproteobacteria S YHS domain - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - YHS DYD2_k127_1660156_0 1366050.N234_37045 1.28e-194 631.0 COG2114@1|root,COG3899@1|root,COG2114@2|Bacteria,COG3899@2|Bacteria,1MUDT@1224|Proteobacteria,2VKH1@28216|Betaproteobacteria,1JZT2@119060|Burkholderiaceae 28216|Betaproteobacteria T adenylyl cyclase class-3 4 guanylyl cyclase - - - - - - - - - - - - AAA_16,DZR,Guanylate_cyc DYD2_k127_1660156_2 1120956.JHZK01000001_gene3456 2.282e-06 55.0 COG2159@1|root,COG2159@2|Bacteria,1PZ2M@1224|Proteobacteria,2VCU0@28211|Alphaproteobacteria,1JQHC@119043|Rhodobiaceae 28211|Alphaproteobacteria S Amidohydrolase - - - - - - - - - - - - Amidohydro_2 DYD2_k127_1660156_1 1007103.AFHW01000091_gene3332 4.017e-09 68.0 COG0715@1|root,COG0715@2|Bacteria,1TRT8@1239|Firmicutes,4HCK6@91061|Bacilli,26SX2@186822|Paenibacillaceae 91061|Bacilli P NMT1-like family ssuA - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1_2 DYD2_k127_1660507_0 926569.ANT_00770 1.379e-45 189.0 COG2373@1|root,COG2373@2|Bacteria,2G8BN@200795|Chloroflexi 200795|Chloroflexi S A-macroglobulin receptor - - - - - - - - - - - - A2M,A2M_N,A2M_N_2,A2M_comp,A2M_recep,Thiol-ester_cl DYD2_k127_1664076_0 401526.TcarDRAFT_2500 1.821e-148 480.0 COG1574@1|root,COG1574@2|Bacteria,1TQ6G@1239|Firmicutes,4H43N@909932|Negativicutes 909932|Negativicutes S Amidohydrolase family - - - - - - - - - - - - Amidohydro_3 DYD2_k127_1664076_1 504472.Slin_4173 9.166e-121 401.0 COG0531@1|root,COG0531@2|Bacteria,4NDU2@976|Bacteroidetes,47M3Z@768503|Cytophagia 976|Bacteroidetes E Amino acid permease - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 DYD2_k127_1666480_2 251229.Chro_2996 6.978e-96 319.0 COG1741@1|root,COG1741@2|Bacteria,1G0UH@1117|Cyanobacteria,3VJ25@52604|Pleurocapsales 1117|Cyanobacteria S Belongs to the pirin family - - - ko:K06911 - - - - ko00000 - - - Pirin DYD2_k127_1666480_3 1519464.HY22_04250 1.125e-60 213.0 COG1956@1|root,COG1956@2|Bacteria,1FF9S@1090|Chlorobi 1090|Chlorobi T GAF domain - - 1.8.4.14 ko:K08968 ko00270,map00270 - R02025 RC00639 ko00000,ko00001,ko01000 - - - GAF_2 DYD2_k127_1666480_0 1242864.D187_004463 0.0 1087.0 COG0243@1|root,COG0243@2|Bacteria,1NS3T@1224|Proteobacteria,42M9Q@68525|delta/epsilon subdivisions,2X7DH@28221|Deltaproteobacteria,2YUKN@29|Myxococcales 28221|Deltaproteobacteria C Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - - - - - - - - - - Molybdopterin,Molydop_binding DYD2_k127_1666480_1 234267.Acid_3931 4.314e-140 451.0 COG2866@1|root,COG2866@2|Bacteria,3Y3X8@57723|Acidobacteria 57723|Acidobacteria E Peptidase M14, carboxypeptidase A - - - - - - - - - - - - Peptidase_M14 DYD2_k127_1667483_1 1298867.AUES01000085_gene3659 1.859e-39 157.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1667483_0 189753.AXAS01000041_gene2534 8.164e-90 307.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_1668503_2 338966.Ppro_0084 1.168e-27 122.0 COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,42R71@68525|delta/epsilon subdivisions,2WMW5@28221|Deltaproteobacteria,43T8P@69541|Desulfuromonadales 28221|Deltaproteobacteria M RHS Repeat - - - - - - - - - - - - DUF4150,RHS,RHS_repeat,Transglut_core DYD2_k127_1668503_1 1150626.PHAMO_220050 1.407e-29 129.0 COG0265@1|root,COG0790@1|root,COG0265@2|Bacteria,COG0790@2|Bacteria,1MV63@1224|Proteobacteria,2TS54@28211|Alphaproteobacteria,2JSRF@204441|Rhodospirillales 204441|Rhodospirillales O Trypsin-like peptidase domain - - - - - - - - - - - - Sel1,Trypsin_2 DYD2_k127_1668503_0 478741.JAFS01000001_gene1353 1.383e-68 238.0 2CJG4@1|root,2Z7VD@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1687878_1 246197.MXAN_2369 1.861e-44 169.0 COG1218@1|root,COG1218@2|Bacteria,1N0GY@1224|Proteobacteria,42QY6@68525|delta/epsilon subdivisions,2WN05@28221|Deltaproteobacteria,2YV4R@29|Myxococcales 28221|Deltaproteobacteria P Inositol monophosphatase family cysQ - 3.1.3.7 ko:K01082 ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130 - R00188,R00508 RC00078 ko00000,ko00001,ko01000,ko03016 - - - Inositol_P DYD2_k127_1687878_0 1173028.ANKO01000147_gene1308 9.513e-188 601.0 COG0076@1|root,COG0076@2|Bacteria,1G3F8@1117|Cyanobacteria,1H9S6@1150|Oscillatoriales 1117|Cyanobacteria E PFAM Pyridoxal-dependent decarboxylase conserved domain - - 4.1.1.105,4.1.1.15,4.1.1.28,4.1.1.86 ko:K01580,ko:K01593,ko:K13745 ko00250,ko00260,ko00350,ko00360,ko00380,ko00410,ko00430,ko00650,ko00901,ko00950,ko00965,ko01100,ko01110,ko01120,ko02024,ko04726,ko04727,ko04728,ko04940,ko05030,ko05031,ko05034,map00250,map00260,map00350,map00360,map00380,map00410,map00430,map00650,map00901,map00950,map00965,map01100,map01110,map01120,map02024,map04726,map04727,map04728,map04940,map05030,map05031,map05034 M00027,M00037,M00042 R00261,R00489,R00685,R00699,R00736,R01682,R02080,R02466,R02701,R04909,R07650 RC00299 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pyridoxal_deC DYD2_k127_1687878_2 926550.CLDAP_22580 1.653e-19 89.0 COG0662@1|root,COG0662@2|Bacteria 2|Bacteria G Cupin 2, conserved barrel domain protein - - - - - - - - - - - - Cupin_1,Cupin_2 DYD2_k127_1703741_0 1123508.JH636453_gene5827 1.478e-99 353.0 COG4447@1|root,COG5276@1|root,COG4447@2|Bacteria,COG5276@2|Bacteria 2|Bacteria S cellulose binding - - - ko:K13735 ko05100,map05100 - - - ko00000,ko00001 - - - Big_2,DUF1566,DUF4347,He_PIG DYD2_k127_1703741_2 234267.Acid_3176 6.811e-48 175.0 COG0346@1|root,COG0346@2|Bacteria,3Y8C4@57723|Acidobacteria 57723|Acidobacteria E Glyoxalase-like domain - - - - - - - - - - - - Glyoxalase DYD2_k127_1703741_1 65393.PCC7424_2734 1.414e-68 241.0 COG3321@1|root,COG3321@2|Bacteria,1GIYS@1117|Cyanobacteria,3KHB9@43988|Cyanothece 1117|Cyanobacteria Q Beta-ketoacyl synthase - - - - - - - - - - - - Acyl_transf_1,KAsynt_C_assoc,Ketoacyl-synt_C,PP-binding,Thioesterase,ketoacyl-synt DYD2_k127_1703741_4 1380347.JNII01000008_gene4168 2.496e-13 78.0 COG2234@1|root,COG2234@2|Bacteria,2I9BM@201174|Actinobacteria,4EU2B@85013|Frankiales 201174|Actinobacteria S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 DYD2_k127_1708336_0 1122603.ATVI01000013_gene1338 1.505e-74 255.0 COG1613@1|root,COG1613@2|Bacteria,1MUAU@1224|Proteobacteria,1RMAR@1236|Gammaproteobacteria,1X4DE@135614|Xanthomonadales 135614|Xanthomonadales P ABC-type sulfate transport system, periplasmic component sbp - - ko:K02048 ko00920,ko02010,map00920,map02010 M00185 - - ko00000,ko00001,ko00002,ko02000 3.A.1.6.1,3.A.1.6.3 - - SBP_bac_11 DYD2_k127_1708336_1 1340493.JNIF01000003_gene2124 1.491e-52 189.0 COG1959@1|root,COG1959@2|Bacteria 2|Bacteria K 2 iron, 2 sulfur cluster binding cymR - - ko:K13643 - - - - ko00000,ko03000 - - - Rrf2 DYD2_k127_1715839_1 880072.Desac_1809 1.689e-58 235.0 COG3087@1|root,COG3170@1|root,COG3087@2|Bacteria,COG3170@2|Bacteria,1QYE5@1224|Proteobacteria 1224|Proteobacteria NU Domain of unknown function (DUF4157) - - - - - - - - - - - - DUF4157 DYD2_k127_1715839_0 880072.Desac_1807 1.262e-104 350.0 COG0464@1|root,COG0464@2|Bacteria,1NF48@1224|Proteobacteria,43BJ4@68525|delta/epsilon subdivisions,2WMCV@28221|Deltaproteobacteria,2MQYF@213462|Syntrophobacterales 28221|Deltaproteobacteria O ATPase family associated with various cellular activities (AAA) - - - - - - - - - - - - AAA DYD2_k127_1716439_0 497965.Cyan7822_2624 6.914e-53 190.0 COG3265@1|root,COG3265@2|Bacteria,1G60D@1117|Cyanobacteria,3KI3B@43988|Cyanothece 1117|Cyanobacteria F TIGRFAM carbohydrate kinase, thermoresistant glucokinase family gntK - 2.7.1.12 ko:K00851 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200 - R01737 RC00002,RC00017 ko00000,ko00001,ko01000 - - - SKI DYD2_k127_1716439_1 28042.GU90_10135 1.333e-21 102.0 COG2867@1|root,COG2867@2|Bacteria,2I2YZ@201174|Actinobacteria,4E4Q2@85010|Pseudonocardiales 201174|Actinobacteria I Polyketide cyclase / dehydrase and lipid transport - - - - - - - - - - - - Polyketide_cyc2 DYD2_k127_1731174_1 344747.PM8797T_12748 1.901e-93 320.0 COG0577@1|root,COG4591@1|root,COG0577@2|Bacteria,COG4591@2|Bacteria,2IYHP@203682|Planctomycetes 203682|Planctomycetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_1731174_0 314230.DSM3645_24005 1.876e-98 336.0 COG1520@1|root,COG1520@2|Bacteria,2IYEA@203682|Planctomycetes 203682|Planctomycetes S PQQ-like domain - - - - - - - - - - - - PQQ_2,PQQ_3 DYD2_k127_1731174_2 1173024.KI912149_gene5854 2.87e-78 268.0 COG0457@1|root,COG0457@2|Bacteria,1GDHI@1117|Cyanobacteria 1117|Cyanobacteria S K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - - - - - - - - - - - DYD2_k127_1739929_1 204669.Acid345_2697 2.021e-88 304.0 COG0249@1|root,COG0249@2|Bacteria,3Y2J5@57723|Acidobacteria,2JHTC@204432|Acidobacteriia 204432|Acidobacteriia L that it carries out the mismatch recognition step. This protein has a weak ATPase activity mutS - - ko:K03555 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V DYD2_k127_1739929_2 572480.Arnit_0940 1.046e-57 207.0 COG0279@1|root,COG0279@2|Bacteria,1NVIE@1224|Proteobacteria,42QUT@68525|delta/epsilon subdivisions,2YNVS@29547|Epsilonproteobacteria 29547|Epsilonproteobacteria G Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate gmhA - 5.3.1.28 ko:K03271 ko00540,ko01100,map00540,map01100 M00064 R05645,R09768,R09769 RC00434 ko00000,ko00001,ko00002,ko01000,ko01005 - - - SIS_2 DYD2_k127_1739929_4 1120949.KB903303_gene6847 5.195e-07 59.0 COG2197@1|root,COG2197@2|Bacteria,2GJRY@201174|Actinobacteria,4DCXI@85008|Micromonosporales 201174|Actinobacteria T helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg DYD2_k127_1739929_3 671143.DAMO_0193 2.049e-24 115.0 COG1596@1|root,COG1596@2|Bacteria,2NPNM@2323|unclassified Bacteria 2|Bacteria M Polysaccharide export protein gumB - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB DYD2_k127_1739929_0 671143.DAMO_0194 5.18e-101 358.0 COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,2NNNP@2323|unclassified Bacteria 2|Bacteria D CobQ CobB MinD ParA nucleotide binding domain ywqD - 2.7.10.1 ko:K08252,ko:K13661,ko:K16554,ko:K16692 ko05111,map05111 - - - ko00000,ko00001,ko01000,ko01001,ko02000 8.A.3.1 - - AAA_31,CbiA,GNVR,ParA,Wzz DYD2_k127_1745507_3 1502770.JQMG01000001_gene1726 7.46e-36 142.0 COG1989@1|root,COG1989@2|Bacteria,1R34X@1224|Proteobacteria,2WIFE@28216|Betaproteobacteria,2KP2C@206350|Nitrosomonadales 206350|Nitrosomonadales NOU Type IV leader peptidase family - - - - - - - - - - - - Peptidase_A24 DYD2_k127_1745507_0 1502770.JQMG01000001_gene1727 3.017e-153 496.0 COG0464@1|root,COG0464@2|Bacteria,1MXFG@1224|Proteobacteria,2WGM1@28216|Betaproteobacteria 28216|Betaproteobacteria O ATPases associated with a variety of cellular activities - - - - - - - - - - - - - DYD2_k127_1745507_2 381666.H16_A0718 2.427e-79 273.0 COG3745@1|root,COG3745@2|Bacteria,1MW75@1224|Proteobacteria,2VMT6@28216|Betaproteobacteria,1K1MZ@119060|Burkholderiaceae 28216|Betaproteobacteria U Pilus assembly protein CpaB cpaB - - ko:K02279 - - - - ko00000,ko02035,ko02044 - - - RcpC,SAF DYD2_k127_1745507_1 29581.BW37_01869 4.006e-131 438.0 COG4964@1|root,COG4964@2|Bacteria,1MV8G@1224|Proteobacteria,2VIVD@28216|Betaproteobacteria,476TC@75682|Oxalobacteraceae 28216|Betaproteobacteria U Pilus formation protein N terminal region cpaC - - ko:K02280 - - - - ko00000,ko02035,ko02044 - - - BON,Secretin,T2SS-T3SS_pil_N DYD2_k127_1750375_3 314230.DSM3645_20387 3.401e-56 204.0 COG0235@1|root,COG0235@2|Bacteria,2J2P1@203682|Planctomycetes 203682|Planctomycetes H Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) mtnB - 4.2.1.109 ko:K08964 ko00270,ko01100,map00270,map01100 M00034 R07392 RC01939 ko00000,ko00001,ko00002,ko01000 - - - Aldolase_II DYD2_k127_1750375_4 1035191.HMPREF0185_03307 2.458e-31 136.0 COG1876@1|root,COG1876@2|Bacteria,1N1CQ@1224|Proteobacteria,2U7GA@28211|Alphaproteobacteria,2KGBW@204458|Caulobacterales 204458|Caulobacterales M PFAM peptidase M15B and M15C DD-carboxypeptidase VanY endolysin - - - - - - - - - - - - PG_binding_1,VanY DYD2_k127_1750375_1 179408.Osc7112_1504 5.087e-63 222.0 COG1670@1|root,COG1670@2|Bacteria,1G9ZR@1117|Cyanobacteria,1HCYG@1150|Oscillatoriales 1117|Cyanobacteria J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 DYD2_k127_1750375_2 1166948.JPZL01000001_gene3114 2.441e-62 223.0 COG1273@1|root,COG1273@2|Bacteria,1N4UX@1224|Proteobacteria,1SBKT@1236|Gammaproteobacteria 1236|Gammaproteobacteria L With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD ku - - ko:K10979 ko03450,map03450 - - - ko00000,ko00001,ko03400 - - - Ku DYD2_k127_1750375_0 1121943.KB899992_gene2160 9.379e-69 243.0 COG1273@1|root,COG1273@2|Bacteria,1N4UX@1224|Proteobacteria,1RNJ7@1236|Gammaproteobacteria 1236|Gammaproteobacteria L With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD - - - ko:K10979 ko03450,map03450 - - - ko00000,ko00001,ko03400 - - - Ku,Rho_N DYD2_k127_1754649_1 211165.AJLN01000045_gene271 1.715e-37 145.0 COG0438@1|root,COG0438@2|Bacteria,1G1X1@1117|Cyanobacteria,1JGSU@1189|Stigonemataceae 1117|Cyanobacteria M Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_1754649_2 395961.Cyan7425_3354 7.119e-29 129.0 COG0457@1|root,COG0457@2|Bacteria 395961.Cyan7425_3354|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_1754649_3 944479.JQLX01000018_gene148 2.653e-12 77.0 COG0726@1|root,COG0726@2|Bacteria,1R7PS@1224|Proteobacteria,42PWA@68525|delta/epsilon subdivisions,2WS9C@28221|Deltaproteobacteria,2M70E@213113|Desulfurellales 28221|Deltaproteobacteria G Polysaccharide deacetylase - - - - - - - - - - - - Polysacc_deac_1 DYD2_k127_1754649_0 247490.KSU1_D0302 3.075e-273 854.0 COG0367@1|root,COG0367@2|Bacteria,2IXAI@203682|Planctomycetes 203682|Planctomycetes E Asparagine synthase, glutamine-hydrolyzing - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_1761931_1 1122165.AUHS01000005_gene1717 1.766e-105 347.0 COG1680@1|root,COG1680@2|Bacteria,1PHIG@1224|Proteobacteria,1SWR9@1236|Gammaproteobacteria,1JGDJ@118969|Legionellales 118969|Legionellales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD2_k127_1761931_0 330214.NIDE2011 8.031e-124 417.0 COG3516@1|root,COG3517@1|root,COG3516@2|Bacteria,COG3517@2|Bacteria 2|Bacteria S type VI secretion protein sciH - - ko:K11900,ko:K11901 ko02025,map02025 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - T6SS_VipA,VipB DYD2_k127_1764991_1 204669.Acid345_0395 9.446e-45 171.0 COG1629@1|root,COG4771@2|Bacteria,3Y2GB@57723|Acidobacteria,2JP02@204432|Acidobacteriia 204432|Acidobacteriia P CarboxypepD_reg-like domain - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_1764991_0 555779.Dthio_PD2257 4.586e-94 317.0 COG1032@1|root,COG1032@2|Bacteria,1MY2Y@1224|Proteobacteria,42NG3@68525|delta/epsilon subdivisions,2WJ95@28221|Deltaproteobacteria,2M84C@213115|Desulfovibrionales 28221|Deltaproteobacteria C SMART Elongator protein 3 MiaB NifB - - - - - - - - - - - - B12-binding,DUF4070,Radical_SAM DYD2_k127_1766671_2 204669.Acid345_1309 7.589e-133 443.0 COG3383@1|root,COG3383@2|Bacteria,3Y2T6@57723|Acidobacteria,2JIAG@204432|Acidobacteriia 204432|Acidobacteriia C PFAM NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding - - 1.6.5.3 ko:K00336 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer2_4,Fer4,Fer4_10,Fer4_6,Molybdop_Fe4S4,Molybdopterin,NADH-G_4Fe-4S_3 DYD2_k127_1766671_0 1121373.KB903623_gene2360 1.012e-155 502.0 COG1894@1|root,COG1894@2|Bacteria,4NFB5@976|Bacteroidetes,47NNF@768503|Cytophagia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain nuoF - 1.12.1.3,1.6.5.3 ko:K00335,ko:K18331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - 2Fe-2S_thioredx,Complex1_51K,Fer4,NADH_4Fe-4S,SLBB DYD2_k127_1766671_3 653733.Selin_0887 8.18e-47 175.0 COG1905@1|root,COG1905@2|Bacteria 2|Bacteria C 2 iron, 2 sulfur cluster binding nuoE - 1.6.5.3 ko:K00334,ko:K00335 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - 2Fe-2S_thioredx DYD2_k127_1766671_1 1382359.JIAL01000001_gene2017 6.356e-153 491.0 COG0649@1|root,COG0649@2|Bacteria,3Y3N1@57723|Acidobacteria,2JIDU@204432|Acidobacteriia 204432|Acidobacteriia C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoD - 1.6.5.3 ko:K00333 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_49kDa,NiFeSe_Hases DYD2_k127_1767177_1 886293.Sinac_1590 5.491e-89 299.0 COG1814@1|root,COG1814@2|Bacteria,2J1PA@203682|Planctomycetes 203682|Planctomycetes S VIT family - - - - - - - - - - - - VIT1 DYD2_k127_1767177_0 316274.Haur_2944 6.148e-176 557.0 COG1830@1|root,COG1830@2|Bacteria,2G8VI@200795|Chloroflexi 200795|Chloroflexi G DeoC/LacD family aldolase - - 4.1.2.13 ko:K11645 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - DeoC DYD2_k127_1778581_4 215803.DB30_8403 3.286e-08 61.0 COG0471@1|root,COG0471@2|Bacteria,1R6QF@1224|Proteobacteria,42MU1@68525|delta/epsilon subdivisions,2X5M3@28221|Deltaproteobacteria,2YV9R@29|Myxococcales 28221|Deltaproteobacteria P Citrate transporter - - - ko:K14445 - - - - ko00000,ko02000 2.A.47.1 - - CitMHS DYD2_k127_1778581_0 589865.DaAHT2_2661 1.599e-36 153.0 COG0446@1|root,COG0446@2|Bacteria,1QSGB@1224|Proteobacteria,43A36@68525|delta/epsilon subdivisions,2WZXC@28221|Deltaproteobacteria,2MP72@213118|Desulfobacterales 28221|Deltaproteobacteria S Pyridine nucleotide-disulphide oxidoreductase - - 1.8.5.4 ko:K17218 ko00920,map00920 - R10152 RC03155 ko00000,ko00001,ko01000 - - - Pyr_redox_2 DYD2_k127_1778581_2 1249997.JHZW01000002_gene1817 1.329e-17 87.0 COG0589@1|root,COG0589@2|Bacteria,4NJ0H@976|Bacteroidetes,1I0HV@117743|Flavobacteriia 976|Bacteroidetes T Universal stress protein family - - - - - - - - - - - - Usp DYD2_k127_1778581_3 1174528.JH992892_gene6574 2.52e-11 67.0 COG2823@1|root,COG2823@2|Bacteria,1GCMH@1117|Cyanobacteria 1117|Cyanobacteria S BON domain - - - - - - - - - - - - BON DYD2_k127_1778581_1 472759.Nhal_1885 7.803e-28 119.0 COG0517@1|root,COG0517@2|Bacteria,1QTVM@1224|Proteobacteria,1SFWU@1236|Gammaproteobacteria,1X1W5@135613|Chromatiales 135613|Chromatiales S Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS DYD2_k127_1778581_5 1329516.JPST01000048_gene1879 1.79e-05 51.0 COG3409@1|root,COG3773@1|root,COG3409@2|Bacteria,COG3773@2|Bacteria,1TRFW@1239|Firmicutes,4HA2V@91061|Bacilli,27BSE@186824|Thermoactinomycetaceae 91061|Bacilli M Cell Wall Hydrolase - - - - - - - - - - - - Hydrolase_2,PG_binding_1 DYD2_k127_1779037_2 1499967.BAYZ01000009_gene5330 2.294e-14 75.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups mtfA - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_1779037_0 211165.AJLN01000116_gene2992 8.663e-23 104.0 COG0500@1|root,COG2226@2|Bacteria,1G96Z@1117|Cyanobacteria 1117|Cyanobacteria Q Methyltransferase domain - - - - - - - - - - - - - DYD2_k127_1779037_1 211165.AJLN01000116_gene2992 1.472e-20 106.0 COG0500@1|root,COG2226@2|Bacteria,1G96Z@1117|Cyanobacteria 1117|Cyanobacteria Q Methyltransferase domain - - - - - - - - - - - - - DYD2_k127_1779037_3 1042326.AZNV01000018_gene1782 3.515e-05 56.0 29RC6@1|root,30CE8@2|Bacteria,1R3PV@1224|Proteobacteria,2TYW8@28211|Alphaproteobacteria,4BC7R@82115|Rhizobiaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - GT87 DYD2_k127_178035_0 344747.PM8797T_07137 3.375e-242 768.0 COG1680@1|root,COG3876@1|root,COG1680@2|Bacteria,COG3876@2|Bacteria,2IXF2@203682|Planctomycetes 203682|Planctomycetes V beta-lactamase - - - - - - - - - - - - Beta-lactamase,DUF1343 DYD2_k127_178035_1 1384049.CD29_15390 3.642e-161 527.0 COG0115@1|root,COG0147@1|root,COG0115@2|Bacteria,COG0147@2|Bacteria,1TQAP@1239|Firmicutes,4HBKC@91061|Bacilli,3IX9U@400634|Lysinibacillus 91061|Bacilli EH Aminobenzoate synthetase pabB - 2.6.1.85,4.1.3.38 ko:K01665,ko:K03342,ko:K13950 ko00790,map00790 - R01716,R05553 RC00010,RC01418,RC01843,RC02148 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_4,Chorismate_bind DYD2_k127_178035_2 234267.Acid_1376 1.403e-135 443.0 COG1629@1|root,COG1629@2|Bacteria 2|Bacteria P transport - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_1787231_0 204669.Acid345_2229 3.868e-166 549.0 COG0308@1|root,COG0308@2|Bacteria,3Y7E9@57723|Acidobacteria,2JMED@204432|Acidobacteriia 204432|Acidobacteriia E Peptidase family M1 domain - - - - - - - - - - - - Peptidase_M1 DYD2_k127_1787231_1 933262.AXAM01000010_gene1383 1.259e-14 82.0 COG1664@1|root,COG1664@2|Bacteria,1N7TF@1224|Proteobacteria,42VWZ@68525|delta/epsilon subdivisions,2WRPF@28221|Deltaproteobacteria,2MM26@213118|Desulfobacterales 28221|Deltaproteobacteria M Polymer-forming cytoskeletal - - - - - - - - - - - - Bactofilin DYD2_k127_1787356_1 1121422.AUMW01000022_gene1566 2.762e-79 275.0 COG1250@1|root,COG1250@2|Bacteria,1TPJS@1239|Firmicutes,248AE@186801|Clostridia,263R6@186807|Peptococcaceae 186801|Clostridia I 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain - - 1.1.1.157 ko:K00074 ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120 - R01976,R05576,R06941 RC00029,RC00117 ko00000,ko00001,ko01000 - - - 3HCDH,3HCDH_N DYD2_k127_1787356_0 1303518.CCALI_02576 8.996e-113 377.0 COG0492@1|root,COG0492@2|Bacteria 2|Bacteria C ferredoxin-NADP+ reductase activity trxB - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_2,Thioredoxin DYD2_k127_1803762_1 1237149.C900_00068 4.895e-57 214.0 COG2374@1|root,COG4935@1|root,COG2374@2|Bacteria,COG4935@2|Bacteria,4NHFV@976|Bacteroidetes,47M74@768503|Cytophagia 976|Bacteroidetes M endonuclease I - - - - - - - - - - - - Big_5,CHB_HEX_C_1,Exo_endo_phos DYD2_k127_1803762_0 1157490.EL26_23860 5.556e-80 285.0 COG3511@1|root,COG3511@2|Bacteria,1VJCE@1239|Firmicutes,4IRFQ@91061|Bacilli 91061|Bacilli M Phosphoesterase family - - 3.1.4.3 ko:K01114 ko00562,ko00564,ko00565,ko01100,ko01110,ko02024,ko04919,map00562,map00564,map00565,map01100,map01110,map02024,map04919 - R01312,R02027,R02052,R03332,R07381 RC00017,RC00425 ko00000,ko00001,ko01000,ko02042 - - - Phosphoesterase DYD2_k127_181025_5 1267533.KB906741_gene405 6.062e-17 83.0 COG4638@1|root,COG4638@2|Bacteria,3Y547@57723|Acidobacteria,2JNCI@204432|Acidobacteriia 204432|Acidobacteriia P Ring hydroxylating alpha subunit (catalytic domain) - - - ko:K00479 - - - - ko00000 - - - Rieske,Ring_hydroxyl_A DYD2_k127_181025_1 204669.Acid345_1269 7.602e-178 565.0 COG0404@1|root,COG0404@2|Bacteria,3Y3IU@57723|Acidobacteria,2JI8G@204432|Acidobacteriia 2|Bacteria E The glycine cleavage system catalyzes the degradation of glycine gcvT - 2.1.2.10 ko:K00605 ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200 M00532 R01221,R02300,R04125 RC00022,RC00069,RC00183,RC02834 ko00000,ko00001,ko00002,ko01000 - - - GCV_T,GCV_T_C DYD2_k127_181025_3 1173264.KI913949_gene1102 3.539e-70 246.0 29CI8@1|root,2ZZGQ@2|Bacteria,1G5V0@1117|Cyanobacteria,1HB9E@1150|Oscillatoriales 1117|Cyanobacteria S Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - - - - - - - - - - AbiEii DYD2_k127_181025_4 247490.KSU1_C0550 5.17e-22 96.0 2E4QQ@1|root,32ZJA@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_181025_6 113355.CM001775_gene734 6.513e-05 47.0 COG3668@1|root,COG3668@2|Bacteria,1G7Z2@1117|Cyanobacteria 1117|Cyanobacteria S Plasmid stabilization system - - - - - - - - - - - - ParE_toxin DYD2_k127_181025_0 204669.Acid345_1270 7.15e-293 904.0 COG1233@1|root,COG1233@2|Bacteria,3Y3T3@57723|Acidobacteria,2JME5@204432|Acidobacteriia 204432|Acidobacteriia Q Flavin containing amine oxidoreductase - - - - - - - - - - - - NAD_binding_8 DYD2_k127_181025_2 204669.Acid345_1271 3.197e-137 451.0 COG1233@1|root,COG1233@2|Bacteria,3Y3I8@57723|Acidobacteria,2JI78@204432|Acidobacteriia 204432|Acidobacteriia C TIGRFAM phytoene desaturase - - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 ko:K10027 ko00906,ko01100,ko01110,map00906,map01100,map01110 - R04787,R04798,R04800,R09691,R09692 RC01214,RC02088,RC02605 ko00000,ko00001,ko01000 - - - Amino_oxidase DYD2_k127_1818102_0 237368.SCABRO_02014 2.698e-137 450.0 COG2204@1|root,COG2204@2|Bacteria,2IYIG@203682|Planctomycetes 203682|Planctomycetes T CheY-like receiver AAA-type ATPase and DNA-binding domains - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_1818102_1 1280950.HJO_00155 0.0002031 44.0 COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TSRP@28211|Alphaproteobacteria,43X75@69657|Hyphomonadaceae 28211|Alphaproteobacteria T signal transduction histidine kinase divJ GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 ko:K07716,ko:K11357 ko02020,ko04112,map02020,map04112 M00511 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA,PAS,PAS_3,PAS_4 DYD2_k127_1819261_1 1173263.Syn7502_00339 6.176e-30 125.0 COG2020@1|root,COG2020@2|Bacteria,1GB2G@1117|Cyanobacteria 1117|Cyanobacteria O Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - - - - - - - - - - PEMT DYD2_k127_1819261_3 449447.MAE_06110 1.09e-26 113.0 2EM4C@1|root,33ETT@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_1819261_2 631362.Thi970DRAFT_00047 5.583e-28 115.0 2E8CI@1|root,332R3@2|Bacteria,1NEZP@1224|Proteobacteria,1SFYS@1236|Gammaproteobacteria,1X193@135613|Chromatiales 135613|Chromatiales - - - - - - - - - - - - - - - DYD2_k127_1819261_0 1123256.KB907945_gene379 1.533e-80 284.0 COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,1RSCP@1236|Gammaproteobacteria,1X74R@135614|Xanthomonadales 135614|Xanthomonadales L Transposase IS116 IS110 IS902 family protein - - - - - - - - - - - - DEDD_Tnp_IS110,Transposase_20 DYD2_k127_1819261_4 485913.Krac_9421 3.77e-06 49.0 COG3344@1|root,COG3344@2|Bacteria,2G7NS@200795|Chloroflexi 200795|Chloroflexi L PFAM RNA-directed DNA polymerase (Reverse transcriptase) - - 2.7.7.49 ko:K00986 - - - - ko00000,ko01000 - - - GIIM,HNH,RVT_1,RVT_N DYD2_k127_1839779_3 1382359.JIAL01000001_gene1740 3.693e-53 188.0 COG2025@1|root,COG2025@2|Bacteria,3Y4SJ@57723|Acidobacteria,2JP3Y@204432|Acidobacteriia 204432|Acidobacteriia C Electron transfer flavoprotein FAD-binding domain - - - ko:K03522 - - - - ko00000,ko04147 - - - ETF,ETF_alpha DYD2_k127_1839779_5 1056820.KB900630_gene1491 1.82e-10 67.0 COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,1S719@1236|Gammaproteobacteria,2PPZ6@256005|Alteromonadales genera incertae sedis 1236|Gammaproteobacteria V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD2_k127_1839779_4 1120954.ATXE01000001_gene2057 5.559e-11 73.0 COG0810@1|root,COG3409@1|root,COG4249@1|root,COG0810@2|Bacteria,COG3409@2|Bacteria,COG4249@2|Bacteria,2IB3R@201174|Actinobacteria,4DW3X@85009|Propionibacteriales 201174|Actinobacteria M Caspase domain - - - - - - - - - - - - PG_binding_1,Peptidase_C14 DYD2_k127_1839779_1 215803.DB30_1920 1.592e-61 222.0 COG1388@1|root,COG3179@1|root,COG1388@2|Bacteria,COG3179@2|Bacteria,1MYUR@1224|Proteobacteria,42UGP@68525|delta/epsilon subdivisions,2WWB8@28221|Deltaproteobacteria,2YZ5E@29|Myxococcales 28221|Deltaproteobacteria M Chitinase class I - - - ko:K03791 - - - - ko00000 - GH19 - Glyco_hydro_19,LysM,PG_binding_1 DYD2_k127_1839779_0 517418.Ctha_1360 8.763e-89 297.0 COG0288@1|root,COG0288@2|Bacteria,1FERE@1090|Chlorobi 1090|Chlorobi H Reversible hydration of carbon dioxide - - 4.2.1.1 ko:K01673 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Pro_CA DYD2_k127_1839779_2 1396418.BATQ01000166_gene1863 1.916e-61 216.0 COG3361@1|root,COG3361@2|Bacteria,46X33@74201|Verrucomicrobia,2IUDI@203494|Verrucomicrobiae 203494|Verrucomicrobiae S Uncharacterized conserved protein (COG2071) - - - - - - - - - - - - DUF2071 DYD2_k127_1845256_0 1545915.JROG01000008_gene3387 1.077e-57 202.0 COG5507@1|root,COG5507@2|Bacteria,1RHC1@1224|Proteobacteria,2UC7A@28211|Alphaproteobacteria,2K5Z8@204457|Sphingomonadales 204457|Sphingomonadales S Protein of unknown function (DUF1428) - - - - - - - - - - - - DUF1428 DYD2_k127_1845256_1 1132441.KI519455_gene2386 1.329e-21 108.0 COG1387@1|root,COG1387@2|Bacteria,2GN1E@201174|Actinobacteria 201174|Actinobacteria E DNA polymerase alpha chain like domain - - - - - - - - - - - - PHP DYD2_k127_1859925_1 756067.MicvaDRAFT_0618 3.513e-112 374.0 COG2175@1|root,COG2175@2|Bacteria,1G1VU@1117|Cyanobacteria,1H97U@1150|Oscillatoriales 1117|Cyanobacteria Q PFAM Taurine catabolism dioxygenase TauD TfdA - - - - - - - - - - - - TauD DYD2_k127_1859925_0 63737.Npun_R3451 2.667e-120 396.0 COG2175@1|root,COG2175@2|Bacteria,1G1VU@1117|Cyanobacteria,1HM5S@1161|Nostocales 1117|Cyanobacteria Q PFAM Taurine catabolism dioxygenase TauD TfdA - - - - - - - - - - - - TauD DYD2_k127_1859925_2 179408.Osc7112_5176 6.261e-82 285.0 COG1020@1|root,COG3320@1|root,COG1020@2|Bacteria,COG3320@2|Bacteria,1G0XE@1117|Cyanobacteria,1H8R8@1150|Oscillatoriales 1117|Cyanobacteria Q Amino acid adenylation enzyme thioester reductase family protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,Thioesterase DYD2_k127_186782_2 880073.Calab_1953 3.726e-16 79.0 COG0579@1|root,COG0579@2|Bacteria,2NPCR@2323|unclassified Bacteria 2|Bacteria C FAD dependent oxidoreductase lhgO - 1.1.99.2 ko:K00109,ko:K15736 ko00650,map00650 - R03534 RC00031 ko00000,ko00001,ko01000 - - - DAO DYD2_k127_186782_0 1366050.N234_37045 8.317e-135 469.0 COG2114@1|root,COG3899@1|root,COG2114@2|Bacteria,COG3899@2|Bacteria,1MUDT@1224|Proteobacteria,2VKH1@28216|Betaproteobacteria,1JZT2@119060|Burkholderiaceae 28216|Betaproteobacteria T adenylyl cyclase class-3 4 guanylyl cyclase - - - - - - - - - - - - AAA_16,DZR,Guanylate_cyc DYD2_k127_186782_3 639030.JHVA01000001_gene2810 6.201e-14 87.0 COG2267@1|root,COG3710@1|root,COG2267@2|Bacteria,COG3710@2|Bacteria 2|Bacteria K Transcriptional regulator - - - - - - - - - - - - AAA_16,Abhydrolase_1,GerE,Trans_reg_C DYD2_k127_186782_1 420324.KI912071_gene8168 3.853e-97 323.0 COG0607@1|root,COG0607@2|Bacteria 2|Bacteria P Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - - - - - - - - - - Rhodanese DYD2_k127_186782_4 491205.JARQ01000003_gene1952 3.442e-10 63.0 COG0579@1|root,COG0579@2|Bacteria,4NE0B@976|Bacteroidetes,1HZQJ@117743|Flavobacteriia,3ZNY8@59732|Chryseobacterium 976|Bacteroidetes S FAD dependent oxidoreductase lhgO - - ko:K15736 - - - - ko00000,ko01000 - - - DAO DYD2_k127_1870133_1 1121456.ATVA01000018_gene350 2.245e-46 172.0 COG0190@1|root,COG0190@2|Bacteria,1MWU4@1224|Proteobacteria,42MW0@68525|delta/epsilon subdivisions,2WJ90@28221|Deltaproteobacteria,2M9FA@213115|Desulfovibrionales 28221|Deltaproteobacteria F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate folD GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 ko:K01491 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R01220,R01655 RC00202,RC00578 ko00000,ko00001,ko00002,ko01000 - - - THF_DHG_CYH,THF_DHG_CYH_C DYD2_k127_1870133_2 643473.KB235930_gene4047 8.559e-26 125.0 COG0741@1|root,COG1729@1|root,COG0741@2|Bacteria,COG1729@2|Bacteria,1G1HC@1117|Cyanobacteria,1HJP8@1161|Nostocales 1117|Cyanobacteria M COGs COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM invasin domains) slt - - ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 - SLT,TPR_16,TPR_6 DYD2_k127_1870133_0 204669.Acid345_3047 3.284e-84 289.0 COG1999@1|root,COG5569@1|root,COG1999@2|Bacteria,COG5569@2|Bacteria,3Y5CC@57723|Acidobacteria,2JHX0@204432|Acidobacteriia 204432|Acidobacteriia S Copper binding periplasmic protein CusF - - - ko:K07152 - - - - ko00000,ko03029 - - - CusF_Ec,SCO1-SenC DYD2_k127_1892380_0 1173027.Mic7113_5049 1.815e-155 508.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G135@1117|Cyanobacteria,1H8D7@1150|Oscillatoriales 1117|Cyanobacteria M Tetratricopeptide repeat - - - - - - - - - - - - CHAT,TPR_1,TPR_10,TPR_12,TPR_7,TPR_8 DYD2_k127_1897790_2 383372.Rcas_2520 3.637e-103 351.0 COG2239@1|root,COG2239@2|Bacteria,2G6H7@200795|Chloroflexi,376RI@32061|Chloroflexia 32061|Chloroflexia P Acts as a magnesium transporter - - - ko:K06213 - - - - ko00000,ko02000 1.A.26.1 - - CBS,MgtE,MgtE_N DYD2_k127_1897790_0 1173022.Cri9333_3749 1.595e-297 929.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1G0GP@1117|Cyanobacteria,1H9GG@1150|Oscillatoriales 1117|Cyanobacteria G Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate ppsA - 2.7.9.2 ko:K01007 ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200 M00173,M00374 R00199 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N DYD2_k127_1897790_4 1156937.MFUM_970081 1.21e-16 84.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,46SVA@74201|Verrucomicrobia,37FY0@326457|unclassified Verrucomicrobia 74201|Verrucomicrobia H Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate - - 2.7.9.2 ko:K01007 ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200 M00173,M00374 R00199 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N DYD2_k127_1897790_1 234267.Acid_7175 6.808e-125 410.0 COG1494@1|root,COG1494@2|Bacteria,3Y2XJ@57723|Acidobacteria 57723|Acidobacteria G Bacterial fructose-1,6-bisphosphatase, glpX-encoded - - 3.1.3.11 ko:K02446 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200 M00003,M00165,M00167 R00762,R04780 RC00017 ko00000,ko00001,ko00002,ko01000 - - - FBPase_glpX DYD2_k127_1897790_3 592029.DDD_0124 1.245e-24 103.0 COG0336@1|root,COG0336@2|Bacteria,4NF2Q@976|Bacteroidetes,1HXFN@117743|Flavobacteriia,3HJPA@363408|Nonlabens 976|Bacteroidetes J Belongs to the RNA methyltransferase TrmD family trmD GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 ko:K00554 - - R00597 RC00003,RC00334 ko00000,ko01000,ko03016 - - - tRNA_m1G_MT DYD2_k127_189786_2 63737.Npun_F4544 0.000402 50.0 COG0501@1|root,COG0501@2|Bacteria,1G0TE@1117|Cyanobacteria,1HIER@1161|Nostocales 1117|Cyanobacteria O Zn-dependent protease with chaperone function - - - - - - - - - - - - Peptidase_M48,Peptidase_M56 DYD2_k127_189786_1 1379270.AUXF01000001_gene2702 6.92e-10 67.0 COG0845@1|root,COG0845@2|Bacteria 2|Bacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - HlyD_3,HlyD_D23 DYD2_k127_189786_0 330214.NIDE1802 7.207e-38 158.0 COG1538@1|root,COG1538@2|Bacteria,3J1F2@40117|Nitrospirae 40117|Nitrospirae MU Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K15725 - - - - ko00000,ko02000 1.B.17.2.2 - - OEP DYD2_k127_190393_5 330214.NIDE2922 7.56e-47 173.0 COG1207@1|root,COG1207@2|Bacteria,3J0CG@40117|Nitrospirae 40117|Nitrospirae M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain glmU - 2.3.1.157,2.7.7.23 ko:K04042 ko00520,ko01100,ko01130,map00520,map01100,map01130 M00362 R00416,R05332 RC00002,RC00004,RC00166 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transf_3 DYD2_k127_190393_0 204669.Acid345_0997 1.395e-275 862.0 COG0449@1|root,COG0449@2|Bacteria,3Y2NE@57723|Acidobacteria,2JI69@204432|Acidobacteriia 204432|Acidobacteriia M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source glmS - 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - GATase_6,SIS DYD2_k127_190393_4 234267.Acid_2024 9.572e-91 304.0 COG1801@1|root,COG1801@2|Bacteria,3Y2WS@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD2_k127_190393_3 1173024.KI912148_gene2699 1.741e-117 389.0 COG0350@1|root,COG2169@1|root,COG0350@2|Bacteria,COG2169@2|Bacteria,1G0MX@1117|Cyanobacteria,1JIE9@1189|Stigonemataceae 1117|Cyanobacteria FL Metal binding domain of Ada - - 2.1.1.63 ko:K00567,ko:K10778 - - - - ko00000,ko01000,ko03000,ko03400 - - - Ada_Zn_binding,DNA_binding_1,HTH_18,Methyltransf_1N DYD2_k127_190393_10 251221.35211177 1.651e-11 66.0 COG2886@1|root,COG2886@2|Bacteria,1G8FV@1117|Cyanobacteria 1117|Cyanobacteria S PFAM Uncharacterised protein family UPF0175 - - - - - - - - - - - - UPF0175 DYD2_k127_190393_9 1173027.Mic7113_1206 4.346e-13 71.0 COG2405@1|root,COG2405@2|Bacteria,1G7KC@1117|Cyanobacteria,1HHFW@1150|Oscillatoriales 1117|Cyanobacteria S Domain of unknown function (DUF3368) - - - ko:K07066 - - - - ko00000 - - - DUF3368 DYD2_k127_190393_1 1267535.KB906767_gene1001 6.983e-221 709.0 COG0210@1|root,COG0210@2|Bacteria,3Y2W8@57723|Acidobacteria,2JIDH@204432|Acidobacteriia 204432|Acidobacteriia L PFAM UvrD REP helicase - - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C DYD2_k127_190393_8 234267.Acid_2121 1.194e-13 75.0 COG0515@1|root,COG0515@2|Bacteria 234267.Acid_2121|- KLT protein kinase activity - - 2.7.11.1 ko:K08884 - - - - ko00000,ko01000,ko01001 - - - - DYD2_k127_190393_7 234267.Acid_4393 1.16e-25 110.0 COG0515@1|root,COG0515@2|Bacteria 234267.Acid_4393|- KLT protein kinase activity - - - - - - - - - - - - - DYD2_k127_190393_2 886293.Sinac_1501 1.354e-216 692.0 COG3591@1|root,COG3591@2|Bacteria,2IXPD@203682|Planctomycetes 203682|Planctomycetes E Peptidase S46 - - - - - - - - - - - - Peptidase_S46 DYD2_k127_190393_6 278963.ATWD01000002_gene232 6.952e-38 153.0 COG0037@1|root,COG0037@2|Bacteria,3Y2F2@57723|Acidobacteria,2JHX8@204432|Acidobacteriia 204432|Acidobacteriia D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine tilS - 6.3.4.19 ko:K04075 - - R09597 RC02633,RC02634 ko00000,ko01000,ko03016 - - - ATP_bind_3,TilS_C DYD2_k127_190420_5 203124.Tery_0117 5.867e-43 161.0 COG1404@1|root,COG4412@1|root,COG1404@2|Bacteria,COG4412@2|Bacteria,1G04D@1117|Cyanobacteria,1H779@1150|Oscillatoriales 1117|Cyanobacteria O Belongs to the peptidase S8 family - - - - - - - - - - - - Calx-beta,HemolysinCabind,Peptidase_S8,SdrD_B DYD2_k127_190420_6 1254432.SCE1572_22725 1.196e-16 89.0 COG1579@1|root,COG1579@2|Bacteria,1R7GT@1224|Proteobacteria,42P3S@68525|delta/epsilon subdivisions,2WKVG@28221|Deltaproteobacteria,2YVT7@29|Myxococcales 28221|Deltaproteobacteria S C4-type zinc ribbon domain - - - ko:K07164 - - - - ko00000 - - - zf-RING_7 DYD2_k127_190420_0 1242864.D187_001870 2.488e-136 441.0 COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,42N94@68525|delta/epsilon subdivisions,2WJH4@28221|Deltaproteobacteria,2YY5W@29|Myxococcales 28221|Deltaproteobacteria M Polysaccharide biosynthesis protein galE1 - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd DYD2_k127_190420_2 1121481.AUAS01000001_gene4802 1.913e-73 259.0 COG3285@1|root,COG3285@2|Bacteria,4NJCK@976|Bacteroidetes,47XQR@768503|Cytophagia 976|Bacteroidetes L DNA ligase - - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M DYD2_k127_190420_1 497964.CfE428DRAFT_2365 6.341e-134 434.0 COG1090@1|root,COG1090@2|Bacteria 2|Bacteria S coenzyme binding yfcH - - ko:K07071 - - - - ko00000 - - - DUF1731,Epimerase DYD2_k127_190420_3 263358.VAB18032_10915 5.477e-61 218.0 COG1309@1|root,COG1309@2|Bacteria,2GJES@201174|Actinobacteria,4DC73@85008|Micromonosporales 201174|Actinobacteria K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N DYD2_k127_190420_7 356851.JOAN01000003_gene1524 1.066e-14 76.0 COG3011@1|root,COG3011@2|Bacteria,2IFGY@201174|Actinobacteria,4DEKH@85008|Micromonosporales 201174|Actinobacteria S Protein of unknown function, DUF393 - - - - - - - - - - - - DUF393 DYD2_k127_190420_8 67332.FM21_25290 5.025e-08 55.0 COG3011@1|root,COG3011@2|Bacteria,2IFGY@201174|Actinobacteria 201174|Actinobacteria S Protein of unknown function, DUF393 - - - - - - - - - - - - DUF393 DYD2_k127_190420_4 497964.CfE428DRAFT_2363 8.197e-49 177.0 2DN6W@1|root,32UIF@2|Bacteria,46WNT@74201|Verrucomicrobia 74201|Verrucomicrobia - - - - - - - - - - - - - - - DYD2_k127_1930779_0 1206741.BAFX01000135_gene1745 2.869e-137 472.0 COG2132@1|root,COG3055@1|root,COG2132@2|Bacteria,COG3055@2|Bacteria,2GK14@201174|Actinobacteria,4FUXU@85025|Nocardiaceae 201174|Actinobacteria Q Domain of unknown function (DUF1929) - - - - - - - - - - - - DUF1929 DYD2_k127_1930779_2 1116472.MGMO_50c00110 9.26e-21 100.0 COG3179@1|root,COG3179@2|Bacteria,1R71F@1224|Proteobacteria,1RZTY@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Chitinase class I - - - - - - - - - - - - Glyco_hydro_19,PG_binding_1 DYD2_k127_1930779_3 179408.Osc7112_1790 0.0001769 49.0 COG3103@1|root,COG3103@2|Bacteria,1G4VS@1117|Cyanobacteria,1H942@1150|Oscillatoriales 1117|Cyanobacteria T PFAM SH3 type 3 - - - - - - - - - - - - SH3_3 DYD2_k127_1930779_1 1379698.RBG1_1C00001G0709 4.292e-28 118.0 COG1899@1|root,COG1899@2|Bacteria,2NR8I@2323|unclassified Bacteria 2|Bacteria O Deoxyhypusine synthase - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009987,GO:0010467,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019538,GO:0034038,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564 2.5.1.46 ko:K00809 - - - - ko00000,ko01000 - - - DS DYD2_k127_1941099_0 1122915.AUGY01000118_gene6533 1.405e-53 201.0 COG0715@1|root,COG0715@2|Bacteria,1VRJ0@1239|Firmicutes,4HV8W@91061|Bacilli,26U3V@186822|Paenibacillaceae 91061|Bacilli P COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - - - - - - - - - - - DYD2_k127_1941099_1 1382304.JNIL01000001_gene3039 4.498e-37 152.0 COG0329@1|root,COG0329@2|Bacteria,1TPVS@1239|Firmicutes,4HATJ@91061|Bacilli 91061|Bacilli E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) - - 4.3.3.7 ko:K01714 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R10147 RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD2_k127_1941099_2 1231391.AMZF01000008_gene1542 1.718e-22 102.0 COG0346@1|root,COG0346@2|Bacteria,1N491@1224|Proteobacteria,2W22E@28216|Betaproteobacteria 28216|Betaproteobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD2_k127_1942366_1 518766.Rmar_1062 1.513e-66 230.0 COG0146@1|root,COG0146@2|Bacteria,4PM5E@976|Bacteroidetes,1FJR8@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes EQ Hydantoinase B/oxoprolinase - - 3.5.2.14 ko:K01474 ko00330,ko01100,map00330,map01100 - R03187 RC00632 ko00000,ko00001,ko01000 - - - Hydantoinase_B DYD2_k127_1942366_0 330214.NIDE3564 9.852e-82 295.0 COG4548@1|root,COG4548@2|Bacteria 2|Bacteria P von Willebrand factor (vWF) type A domain - - - ko:K02448 - - R00294 RC02794 ko00000 3.D.4.10 - - VWA,VWA_2 DYD2_k127_1942446_0 671143.DAMO_1298 8.301e-116 383.0 COG2204@1|root,COG2204@2|Bacteria,2NP3X@2323|unclassified Bacteria 2|Bacteria T COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - ko:K13599 ko02020,map02020 M00498 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_1942446_2 751945.Theos_2004 3.436e-06 55.0 COG3744@1|root,COG3744@2|Bacteria,1WKBP@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S PFAM PIN domain - - - - - - - - - - - - PIN DYD2_k127_1942446_3 566461.SSFG_02371 2.545e-05 50.0 COG2161@1|root,COG2161@2|Bacteria 2|Bacteria D toxin-antitoxin pair type II binding relB GO:0003674,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0040008,GO:0045927,GO:0048518,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097351,GO:1903506,GO:2000112,GO:2001141 2.3.1.15 ko:K08591,ko:K19159 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004,ko02048 - - - PhdYeFM_antitox DYD2_k127_1942446_1 1458357.BG58_08930 1.279e-16 86.0 COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2VQCB@28216|Betaproteobacteria,1K6T3@119060|Burkholderiaceae 28216|Betaproteobacteria I Enoyl-CoA hydratase/isomerase - - - ko:K07546 ko00623,ko01100,ko01120,ko01220,map00623,map01100,map01120,map01220 M00418 R05599 RC01435 ko00000,ko00001,ko00002,ko01000 - - - ECH_1 DYD2_k127_1947937_1 234267.Acid_5024 3.533e-39 150.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria 2|Bacteria U Involved in the tonB-independent uptake of proteins - - 2.7.11.1 ko:K08884,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PD40,Pkinase,WD40 DYD2_k127_1947937_0 243231.GSU2383 2.274e-110 372.0 COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,42MXN@68525|delta/epsilon subdivisions,2WJN0@28221|Deltaproteobacteria,43TZF@69541|Desulfuromonadales 28221|Deltaproteobacteria H Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia trpE - 4.1.3.27 ko:K01657,ko:K13503 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Anth_synt_I_N,Chorismate_bind DYD2_k127_1948235_3 1122164.JHWF01000028_gene674 3.812e-06 51.0 COG0520@1|root,COG0520@2|Bacteria,1MUPD@1224|Proteobacteria,1RN3S@1236|Gammaproteobacteria,1JF0I@118969|Legionellales 118969|Legionellales E Aminotransferase class-V - - - - - - - - - - - - Aminotran_5 DYD2_k127_1948235_1 864073.HFRIS_019408 1.289e-43 171.0 COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,2VIX7@28216|Betaproteobacteria 28216|Betaproteobacteria K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate DYD2_k127_1948235_2 593117.TGAM_0381 1.444e-36 154.0 COG2971@1|root,arCOG03659@2157|Archaea,2Y02S@28890|Euryarchaeota 28890|Euryarchaeota G BadF/BadG/BcrA/BcrD ATPase family - - 2.7.1.59 ko:K00884 ko00520,ko01100,map00520,map01100 - R01201 RC00002,RC00017 ko00000,ko00001,ko01000 - - - BcrAD_BadFG DYD2_k127_1948235_0 1485543.JMME01000002_gene1693 1.519e-44 166.0 COG2103@1|root,COG2103@2|Bacteria,1TPSF@1239|Firmicutes,4H28B@909932|Negativicutes 909932|Negativicutes G Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate murQ - 4.2.1.126 ko:K07106 ko00520,ko01100,map00520,map01100 - R08555 RC00397,RC00746 ko00000,ko00001,ko01000 - - - SIS,SIS_2 DYD2_k127_1951825_0 263358.VAB18032_18975 6.432e-214 700.0 COG3291@1|root,COG3291@2|Bacteria,2I5PU@201174|Actinobacteria,4DMPN@85008|Micromonosporales 201174|Actinobacteria M Fungalysin metallopeptidase (M36) - - - - - - - - - - - - FTP,PA,Peptidase_M36 DYD2_k127_1951825_2 1487953.JMKF01000067_gene3895 2.72e-08 63.0 COG0501@1|root,COG0501@2|Bacteria 2|Bacteria O metalloendopeptidase activity - - - - - - - - - - - - Peptidase_M48 DYD2_k127_1951825_1 1459636.NTE_01123 4.633e-94 336.0 COG0421@1|root,arCOG00050@2157|Archaea 2157|Archaea H Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine speE GO:0003674,GO:0003824,GO:0004766,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0010487,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0043918,GO:0043919,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0050314,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 ko:K00797 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R01920,R02869,R08359 RC00021,RC00053 ko00000,ko00001,ko00002,ko01000 - - - Spermine_synt_N,Spermine_synth DYD2_k127_195384_1 1198114.AciX9_1021 1.446e-152 491.0 COG0183@1|root,COG0183@2|Bacteria,3Y3SQ@57723|Acidobacteria,2JHU2@204432|Acidobacteriia 204432|Acidobacteriia I Belongs to the thiolase family - - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N DYD2_k127_195384_3 383372.Rcas_3282 3.556e-91 311.0 COG1208@1|root,COG1208@2|Bacteria,2G65W@200795|Chloroflexi,376T2@32061|Chloroflexia 32061|Chloroflexia M PFAM transferase hexapeptide repeat containing protein - - 2.7.7.13 ko:K00966 ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110 M00114,M00361,M00362 R00885 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transferase DYD2_k127_195384_2 632292.Calhy_0996 2.318e-122 408.0 COG1109@1|root,COG1109@2|Bacteria,1TP2N@1239|Firmicutes,2481Y@186801|Clostridia,42FCM@68295|Thermoanaerobacterales 186801|Clostridia G phosphoglucomutase phosphomannomutase alpha beta alpha domain I - - 5.4.2.2,5.4.2.8 ko:K01835,ko:K01840 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114,M00549 R00959,R01057,R01818,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV DYD2_k127_195384_4 635013.TherJR_0964 5.16e-62 223.0 COG0266@1|root,COG0266@2|Bacteria,1TPM9@1239|Firmicutes,24BH2@186801|Clostridia,260YT@186807|Peptococcaceae 186801|Clostridia L Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates fpg - 3.2.2.23,4.2.99.18 ko:K10563 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Fapy_DNA_glyco,H2TH,zf-FPG_IleRS DYD2_k127_195384_0 1121920.AUAU01000004_gene813 1.88e-174 565.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,3Y3V0@57723|Acidobacteria 57723|Acidobacteria EU peptidase S9B dipeptidylpeptidase IV domain protein - - 3.4.14.5 ko:K01278 ko04974,map04974 - - - ko00000,ko00001,ko01000,ko01002,ko04090,ko04147 - - - DPPIV_N,Peptidase_S9 DYD2_k127_1955004_0 1183438.GKIL_0464 8.342e-164 526.0 COG0677@1|root,COG0677@2|Bacteria,1G4FW@1117|Cyanobacteria 1117|Cyanobacteria M Belongs to the UDP-glucose GDP-mannose dehydrogenase family - - 1.1.1.136 ko:K13015 ko00520,map00520 - R00421 RC00291 ko00000,ko00001,ko01000,ko01005 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N DYD2_k127_1955004_1 1167006.UWK_01793 1.541e-134 437.0 COG0381@1|root,COG0381@2|Bacteria,1QUYI@1224|Proteobacteria,42MSY@68525|delta/epsilon subdivisions,2WJXR@28221|Deltaproteobacteria,2MIGG@213118|Desulfobacterales 28221|Deltaproteobacteria M Belongs to the UDP-N-acetylglucosamine 2-epimerase family wecB - 5.1.3.14,5.1.3.23 ko:K01791,ko:K13019 ko00520,ko01100,ko05111,map00520,map01100,map05111 M00362 R00420,R09600 RC00290 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Epimerase_2 DYD2_k127_1955004_2 880073.Calab_2669 3.232e-68 249.0 COG0438@1|root,COG1216@1|root,COG3551@1|root,COG0438@2|Bacteria,COG1216@2|Bacteria,COG3551@2|Bacteria,2NPQ4@2323|unclassified Bacteria 2|Bacteria J Glycosyltransferase like family 2 - - - ko:K07011,ko:K20444 - - - - ko00000,ko01000,ko01005,ko02000 4.D.1.3 GT2,GT4 - Glyco_trans_1_4,Glycos_transf_2,Methyltransf_23 DYD2_k127_1955300_2 1267533.KB906735_gene4479 0.0003048 53.0 COG2244@1|root,COG2244@2|Bacteria 2|Bacteria S polysaccharide biosynthetic process - - - ko:K03328 - - - - ko00000 2.A.66.2 - - Polysacc_synt,Polysacc_synt_3,Polysacc_synt_C DYD2_k127_1955300_0 1270196.JCKI01000006_gene2597 1.89e-47 186.0 COG0438@1|root,COG0438@2|Bacteria,4NT2P@976|Bacteroidetes,1IU1Q@117747|Sphingobacteriia 976|Bacteroidetes M transferase activity, transferring glycosyl groups - - - - - - - - - - - - - DYD2_k127_1955300_1 468059.AUHA01000004_gene2132 2.041e-34 140.0 COG0438@1|root,COG0438@2|Bacteria,4PGC8@976|Bacteroidetes,1ITGW@117747|Sphingobacteriia 976|Bacteroidetes M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_transf_4 DYD2_k127_1957365_0 639282.DEFDS_2114 1.371e-139 454.0 COG0443@1|root,COG0443@2|Bacteria,2GEXS@200930|Deferribacteres 200930|Deferribacteres O Heat shock 70 kDa protein dnaK - - ko:K04043 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33.1 - - HSP70 DYD2_k127_1957365_1 1027273.GZ77_21025 7.875e-126 413.0 COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,1RNHY@1236|Gammaproteobacteria,1XH4T@135619|Oceanospirillales 135619|Oceanospirillales O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins dnaJ - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG DYD2_k127_1961754_2 1379270.AUXF01000004_gene3311 2.577e-26 111.0 COG4867@1|root,COG4867@2|Bacteria,1ZT0B@142182|Gemmatimonadetes 142182|Gemmatimonadetes S von Willebrand factor (vWF) type A domain - - - - - - - - - - - - VWA_2 DYD2_k127_1961754_0 1173025.GEI7407_3082 9.163e-166 560.0 COG0642@1|root,COG0745@1|root,COG2202@1|root,COG3614@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,COG3614@2|Bacteria,1G09B@1117|Cyanobacteria,1H7T9@1150|Oscillatoriales 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - CHASE,DUF4118,GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_1961754_1 1157640.AQWO01000010_gene2827 5.026e-45 168.0 COG0596@1|root,COG0596@2|Bacteria,2GNFU@201174|Actinobacteria 201174|Actinobacteria S Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4,Abhydrolase_6 DYD2_k127_1972337_2 518766.Rmar_1680 5.206e-47 170.0 COG0476@1|root,COG0607@1|root,COG0476@2|Bacteria,COG0607@2|Bacteria,4NFUD@976|Bacteroidetes,1FIWE@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes HP ThiF family moeZ - 2.7.7.80,2.8.1.11 ko:K21029,ko:K21147 ko04122,map04122 - R07459,R07461 RC00043 ko00000,ko00001,ko01000 - - - Rhodanese,ThiF DYD2_k127_1972337_4 44251.PDUR_03270 1.57e-37 145.0 COG0476@1|root,COG0476@2|Bacteria,1TQ3U@1239|Firmicutes,4HBGP@91061|Bacilli,271Z6@186822|Paenibacillaceae 91061|Bacilli H ThiS family - - 2.7.7.80,2.8.1.11 ko:K21029,ko:K21147 ko04122,map04122 - R07459,R07461 RC00043 ko00000,ko00001,ko01000 - - - Rhodanese,ThiF,ThiS DYD2_k127_1972337_3 1268072.PSAB_02815 1.066e-46 172.0 COG1310@1|root,COG1310@2|Bacteria,1VKT4@1239|Firmicutes 1239|Firmicutes S JAB/MPN domain - - - - - - - - - - - - Prok-JAB DYD2_k127_1972337_1 518766.Rmar_1677 1.625e-123 404.0 COG0031@1|root,COG0031@2|Bacteria,4NF7E@976|Bacteroidetes,1FIN7@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes E Pyridoxal-phosphate dependent enzyme cysM - 2.5.1.47 ko:K12339 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03132,R03601,R04859 RC00020,RC02814,RC02821,RC02876 ko00000,ko00001,ko00002,ko01000 - - - PALP DYD2_k127_1972337_0 1267533.KB906733_gene3096 5.428e-156 507.0 COG1215@1|root,COG1215@2|Bacteria,3Y31I@57723|Acidobacteria,2JIKW@204432|Acidobacteriia 204432|Acidobacteriia M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glyco_tranf_2_3 DYD2_k127_1972999_1 269799.Gmet_0906 1.584e-25 109.0 COG0477@1|root,COG0477@2|Bacteria,1QWSX@1224|Proteobacteria,43C55@68525|delta/epsilon subdivisions,2X7FI@28221|Deltaproteobacteria 28221|Deltaproteobacteria EGP MFS/sugar transport protein - - - - - - - - - - - - MFS_1 DYD2_k127_1972999_2 1229487.AMYW01000006_gene635 3.185e-12 73.0 COG2318@1|root,COG2318@2|Bacteria,4NGXE@976|Bacteroidetes,1HZ7A@117743|Flavobacteriia,2NUV8@237|Flavobacterium 976|Bacteroidetes S Protein of unknown function (DUF664) - - - - - - - - - - - - DUF664 DYD2_k127_1972999_0 42256.RradSPS_0202 1.599e-140 467.0 COG0749@1|root,COG0749@2|Bacteria,2GJY2@201174|Actinobacteria,4CP7C@84995|Rubrobacteria 84995|Rubrobacteria L DNA polymerase - - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - DNA_pol_A,DNA_pol_A_exo1 DYD2_k127_1973687_1 1121920.AUAU01000012_gene2645 9.761e-92 306.0 COG0320@1|root,COG0320@2|Bacteria,3Y3D4@57723|Acidobacteria 57723|Acidobacteria H Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives - - - - - - - - - - - - Radical_SAM DYD2_k127_1973687_0 404589.Anae109_2774 6.661e-123 403.0 COG0604@1|root,COG0604@2|Bacteria,1MXUX@1224|Proteobacteria,42UGV@68525|delta/epsilon subdivisions,2WR1G@28221|Deltaproteobacteria,2YUDE@29|Myxococcales 28221|Deltaproteobacteria C Zinc-binding dehydrogenase - - - - - - - - - - - - ADH_N,ADH_zinc_N DYD2_k127_1973687_2 1173021.ALWA01000034_gene4096 3.001e-22 104.0 COG0745@1|root,COG0745@2|Bacteria 1173021.ALWA01000034_gene4096|- T phosphorelay signal transduction system - - - - - - - - - - - - - DYD2_k127_198020_1 1150626.PHAMO_380065 4.839e-06 50.0 COG3459@1|root,COG3459@2|Bacteria,1MVNX@1224|Proteobacteria,2TSAJ@28211|Alphaproteobacteria,2JRE2@204441|Rhodospirillales 204441|Rhodospirillales G Glycosyl hydrolase 36 superfamily, catalytic domain - - - ko:K13688 - - - - ko00000,ko01000,ko01003 - GH94,GT84 - Glyco_hydro_36,Glyco_transf_36,Glycoamylase DYD2_k127_198020_0 635013.TherJR_2008 1.293e-13 76.0 2ERYM@1|root,33JHS@2|Bacteria,1VMJJ@1239|Firmicutes,2530R@186801|Clostridia 186801|Clostridia S MTH538 TIR-like domain (DUF1863) - - - - - - - - - - - - DUF1863 DYD2_k127_1988346_1 589865.DaAHT2_1307 1.086e-70 256.0 COG4591@1|root,COG4591@2|Bacteria,1MVV7@1224|Proteobacteria,42MV0@68525|delta/epsilon subdivisions,2WITK@28221|Deltaproteobacteria,2MHM1@213118|Desulfobacterales 28221|Deltaproteobacteria M TIGRFAM lipoprotein releasing system, transmembrane protein, LolC E family lolC - - ko:K09808 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko02000 3.A.1.125 - - FtsX,MacB_PCD DYD2_k127_1988346_2 880072.Desac_2720 3.125e-55 205.0 COG1136@1|root,COG1136@2|Bacteria,1MVSQ@1224|Proteobacteria,42QNS@68525|delta/epsilon subdivisions,2WMSN@28221|Deltaproteobacteria,2MQF7@213462|Syntrophobacterales 28221|Deltaproteobacteria V Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner lolD - - ko:K09810 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.125 - - ABC_tran DYD2_k127_1988346_0 1267535.KB906767_gene5324 3.209e-163 519.0 COG0542@1|root,COG0542@2|Bacteria,3Y35D@57723|Acidobacteria,2JIRK@204432|Acidobacteriia 204432|Acidobacteriia O Belongs to the ClpA ClpB family - - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N DYD2_k127_2012056_3 1267535.KB906767_gene2804 8.749e-36 139.0 COG0789@1|root,COG0789@2|Bacteria,3Y4KX@57723|Acidobacteria,2JJA1@204432|Acidobacteriia 204432|Acidobacteriia K MerR HTH family regulatory protein - - - ko:K13640 - - - - ko00000,ko03000 - - - MerR_1 DYD2_k127_2012056_1 204669.Acid345_0979 4.807e-112 374.0 COG0484@1|root,COG0484@2|Bacteria,3Y2XW@57723|Acidobacteria,2JHWV@204432|Acidobacteriia 204432|Acidobacteriia O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins - - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG DYD2_k127_2012056_0 1267535.KB906767_gene2802 2.584e-294 914.0 COG0443@1|root,COG0443@2|Bacteria,3Y2XU@57723|Acidobacteria,2JHT1@204432|Acidobacteriia 204432|Acidobacteriia O Heat shock 70 kDa protein dnaK - - ko:K04043 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33.1 - - HSP70 DYD2_k127_2012056_4 436114.SYO3AOP1_0595 6.198e-30 126.0 COG0558@1|root,COG0558@2|Bacteria,2G47K@200783|Aquificae 200783|Aquificae I Belongs to the CDP-alcohol phosphatidyltransferase class-I family pgsA1 GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576 2.7.8.41 ko:K08744 ko00564,ko01100,map00564,map01100 - R02030 RC00002,RC00017 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf DYD2_k127_2012056_2 1123399.AQVE01000001_gene529 9.311e-50 188.0 COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,1RZ45@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Metallophosphoesterase - - - ko:K07098 - - - - ko00000 - - - Metallophos DYD2_k127_2029552_2 1177928.TH2_07911 6.198e-05 49.0 COG2905@1|root,COG2905@2|Bacteria,1QTTR@1224|Proteobacteria,2TW0S@28211|Alphaproteobacteria,2JTTA@204441|Rhodospirillales 204441|Rhodospirillales T Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS DYD2_k127_2029552_0 945713.IALB_1501 3.147e-254 797.0 COG0674@1|root,COG1014@1|root,COG0674@2|Bacteria,COG1014@2|Bacteria 2|Bacteria C Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin korA GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 ko:K00174 ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200 M00009,M00011,M00173,M00620 R01196,R01197 RC00004,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - PFOR_II,POR,POR_N DYD2_k127_2029552_1 1414720.CBYM010000012_gene2565 7.297e-10 64.0 COG0446@1|root,COG0607@1|root,COG0446@2|Bacteria,COG0607@2|Bacteria,1TPWW@1239|Firmicutes,2484C@186801|Clostridia,36DJA@31979|Clostridiaceae 186801|Clostridia P Belongs to the sulfur carrier protein TusA family - - - - - - - - - - - - Pyr_redox_2,Pyr_redox_dim,Rhodanese DYD2_k127_2029552_3 665942.HMPREF1022_01480 8.326e-05 45.0 COG0607@1|root,COG0607@2|Bacteria,1Q5KY@1224|Proteobacteria,42WYK@68525|delta/epsilon subdivisions,2WQQW@28221|Deltaproteobacteria,2MDQK@213115|Desulfovibrionales 28221|Deltaproteobacteria P PFAM Rhodanese domain protein - - - - - - - - - - - - Rhodanese DYD2_k127_2029820_1 1340493.JNIF01000003_gene3632 1.135e-40 162.0 COG0356@1|root,COG0356@2|Bacteria,3Y4CM@57723|Acidobacteria 57723|Acidobacteria C it plays a direct role in the translocation of protons across the membrane atpB - - ko:K02108 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko03110 3.A.2.1 - - ATP-synt_A DYD2_k127_2029820_2 448385.sce7980 3.188e-11 70.0 COG0636@1|root,COG0636@2|Bacteria,1QAIF@1224|Proteobacteria,43A8Y@68525|delta/epsilon subdivisions,2X9Z1@28221|Deltaproteobacteria,2YW38@29|Myxococcales 28221|Deltaproteobacteria C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpE - - ko:K02110 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_C DYD2_k127_2029820_0 1144275.COCOR_02951 5.107e-76 275.0 COG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria,42Q67@68525|delta/epsilon subdivisions,2WKZ1@28221|Deltaproteobacteria,2YUQ6@29|Myxococcales 28221|Deltaproteobacteria KLT serine threonine protein kinase - - 2.7.11.1 ko:K08884,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - AAA_16,Pkinase,TPR_12,zinc_ribbon_2 DYD2_k127_2029820_3 1120985.AUMI01000014_gene774 2.387e-05 48.0 COG1663@1|root,COG1663@2|Bacteria,1TWGA@1239|Firmicutes,4H97G@909932|Negativicutes 909932|Negativicutes M Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) lpxK - 2.7.1.130 ko:K00912 ko00540,ko01100,map00540,map01100 M00060 R04657 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Glycos_transf_N,LpxK DYD2_k127_2034892_3 1267533.KB906738_gene2439 7.452e-09 64.0 COG0392@1|root,COG0558@1|root,COG0392@2|Bacteria,COG0558@2|Bacteria 2|Bacteria I Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - ko:K07027 - - - - ko00000,ko02000 4.D.2 - - CDP-OH_P_transf,LPG_synthase_TM DYD2_k127_2034892_1 204669.Acid345_0559 8.9e-44 174.0 COG4591@1|root,COG4591@2|Bacteria 2|Bacteria M lipoprotein localization to outer membrane - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,LolA_like,MacB_PCD DYD2_k127_2034892_2 1499967.BAYZ01000003_gene5886 2.622e-14 86.0 COG1807@1|root,COG5427@1|root,COG1807@2|Bacteria,COG5427@2|Bacteria,2NQDS@2323|unclassified Bacteria 2|Bacteria M Uncharacterized membrane protein (DUF2298) - - - - - - - - - - - - DUF2298,PMT_2,TPR_8 DYD2_k127_2034892_0 452637.Oter_1442 1.677e-152 493.0 COG0737@1|root,COG0737@2|Bacteria,46VVX@74201|Verrucomicrobia 74201|Verrucomicrobia F 5'-nucleotidase, C-terminal domain - - 3.1.3.6,3.1.4.16 ko:K01119 ko00230,ko00240,map00230,map00240 - R01562,R01877,R02148,R02370,R03537,R03538,R03929,R05135 RC00078,RC00296 ko00000,ko00001,ko01000 - - - 5_nucleotid_C,Metallophos DYD2_k127_2035047_2 673862.BABL1_857 4.507e-10 72.0 COG0666@1|root,COG0666@2|Bacteria,1N952@1224|Proteobacteria 1224|Proteobacteria KT ankyrin repeat - - - ko:K21440 - - - - ko00000,ko04131 - - - Ank_2,Ank_4 DYD2_k127_2035047_1 661478.OP10G_4286 2.84e-13 82.0 2EKVR@1|root,33EJ9@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2035047_0 1499967.BAYZ01000153_gene1551 7.185e-52 204.0 COG2373@1|root,COG2373@2|Bacteria 2|Bacteria U Large extracellular alpha-helical protein - - - ko:K06894 - - - - ko00000 - - - A2M,A2M_N,A2M_N_2,A2M_comp,A2M_recep,CarboxypepD_reg,Plug,Thiol-ester_cl DYD2_k127_2040113_1 1089553.Tph_c14030 1.696e-36 140.0 COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,1TPH9@1239|Firmicutes,248B0@186801|Clostridia,42FC2@68295|Thermoanaerobacterales 186801|Clostridia H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ribBA - 3.5.4.25,4.1.99.12 ko:K14652 ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110 M00125,M00840 R00425,R07281 RC00293,RC01792,RC01815,RC02504 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS10830 DHBP_synthase,GTP_cyclohydro2 DYD2_k127_2040113_3 195250.CM001776_gene1676 2.895e-05 55.0 COG0457@1|root,COG0457@2|Bacteria,1G5NW@1117|Cyanobacteria,1H39E@1129|Synechococcus 1117|Cyanobacteria S TPR repeat - - - - - - - - - - - - TPR_11,TPR_16,TPR_19,TPR_2,TPR_8 DYD2_k127_2040113_2 204669.Acid345_3615 3.183e-13 81.0 COG0457@1|root,COG0457@2|Bacteria 204669.Acid345_3615|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_2040113_0 502025.Hoch_5509 1.205e-52 201.0 COG1629@1|root,COG4771@2|Bacteria,1MW4X@1224|Proteobacteria,43C0B@68525|delta/epsilon subdivisions,2X7B2@28221|Deltaproteobacteria,2Z3EU@29|Myxococcales 28221|Deltaproteobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_2040662_2 1242864.D187_002182 2.899e-54 197.0 COG4430@1|root,COG4430@2|Bacteria,1NEN6@1224|Proteobacteria 1224|Proteobacteria S Protein conserved in bacteria - - - - - - - - - - - - OmdA DYD2_k127_2040662_1 163908.KB235896_gene1120 3.651e-125 423.0 COG0642@1|root,COG0784@1|root,COG2461@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,COG2461@2|Bacteria,1G09B@1117|Cyanobacteria,1HMTJ@1161|Nostocales 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - CHASE,DUF4118,GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_2040662_0 1267533.KB906737_gene1726 1.355e-196 615.0 COG1740@1|root,COG1740@2|Bacteria 2|Bacteria C oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor hupS - 1.12.99.6 ko:K06282 ko00633,ko01120,map00633,map01120 - R08034 RC00250 ko00000,ko00001,ko01000 - - - NiFe_hyd_SSU_C,Oxidored_q6 DYD2_k127_2040662_3 313596.RB2501_04360 9.972e-18 87.0 COG0640@1|root,COG0640@2|Bacteria,4P2KY@976|Bacteroidetes,1I8KX@117743|Flavobacteriia 976|Bacteroidetes K Transcriptional regulator - - - - - - - - - - - - - DYD2_k127_204154_1 1120944.JONS01000004_gene2869 8.383e-05 51.0 COG0789@1|root,COG0789@2|Bacteria,2GM67@201174|Actinobacteria,4D3VD@85005|Actinomycetales 201174|Actinobacteria K Transcriptional regulator merR2 - - - - - - - - - - - MerR_1 DYD2_k127_204154_0 485916.Dtox_2231 8.795e-17 94.0 28P53@1|root,2ZC07@2|Bacteria,1VNRW@1239|Firmicutes,24ZF8@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - DYD2_k127_2043164_3 1267534.KB906758_gene2456 4.096e-15 89.0 COG2885@1|root,COG2885@2|Bacteria,3Y310@57723|Acidobacteria,2JI18@204432|Acidobacteriia 57723|Acidobacteria M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - - DYD2_k127_2043164_1 240015.ACP_0916 1.732e-99 353.0 COG3292@1|root,COG4447@1|root,COG3292@2|Bacteria,COG4447@2|Bacteria,3Y3Y6@57723|Acidobacteria,2JI5Y@204432|Acidobacteriia 204432|Acidobacteriia T Two component regulator propeller - - - - - - - - - - - - BNR,Sortilin-Vps10 DYD2_k127_2043164_0 204669.Acid345_4661 1.986e-206 660.0 COG0539@1|root,COG0539@2|Bacteria,3Y3DA@57723|Acidobacteria,2JHS3@204432|Acidobacteriia 204432|Acidobacteriia J Ribosomal protein S1 - - - ko:K02945 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - S1 DYD2_k127_2043164_2 1267535.KB906767_gene253 7.636e-33 130.0 COG0776@1|root,COG0776@2|Bacteria,3Y56V@57723|Acidobacteria,2JJMF@204432|Acidobacteriia 204432|Acidobacteriia L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions - - - ko:K05788 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding DYD2_k127_2043164_4 522772.Dacet_2830 1.329e-10 64.0 COG0537@1|root,COG0537@2|Bacteria,2GFI1@200930|Deferribacteres 200930|Deferribacteres FG Protein similar to CwfJ C-terminus 1 - - 2.7.7.53 ko:K19710 ko00230,map00230 - R00126,R01618 RC00002,RC02753,RC02795 ko00000,ko00001,ko01000 - - - HIT DYD2_k127_2049552_1 933262.AXAM01000049_gene3275 6.527e-29 122.0 COG2337@1|root,COG2337@2|Bacteria,1N0C3@1224|Proteobacteria,438U7@68525|delta/epsilon subdivisions,2WYAH@28221|Deltaproteobacteria 28221|Deltaproteobacteria T PemK-like, MazF-like toxin of type II toxin-antitoxin system - - - - - - - - - - - - PemK_toxin DYD2_k127_2049552_5 157783.LK03_03605 2.895e-06 52.0 COG2002@1|root,COG2002@2|Bacteria,1RDTC@1224|Proteobacteria,1SAM7@1236|Gammaproteobacteria 1236|Gammaproteobacteria K AbrB family transcriptional regulator - - - ko:K19156 - - - - ko00000,ko02048 - - - PrlF_antitoxin DYD2_k127_2049552_4 706587.Desti_0593 1.146e-06 57.0 COG1595@1|root,COG1595@2|Bacteria 2|Bacteria K DNA-templated transcription, initiation - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4,Sigma70_r4_2 DYD2_k127_2049552_2 671143.DAMO_2675 5.558e-25 106.0 2DSDZ@1|root,33FQR@2|Bacteria 2|Bacteria S Bacterial antitoxin of type II TA system, VapB - - - - - - - - - - - - VapB_antitoxin DYD2_k127_2049552_0 671143.DAMO_2676 1.639e-68 235.0 COG1848@1|root,COG1848@2|Bacteria,2NRZ1@2323|unclassified Bacteria 2|Bacteria S Toxic component of a toxin-antitoxin (TA) module. An RNase - - - ko:K07064 - - - - ko00000 - - - PIN DYD2_k127_2049552_3 880072.Desac_0177 1.176e-19 89.0 COG5621@1|root,COG5621@2|Bacteria,1MUVF@1224|Proteobacteria,42Q9D@68525|delta/epsilon subdivisions,2WK21@28221|Deltaproteobacteria,2MQ4M@213462|Syntrophobacterales 28221|Deltaproteobacteria S Lipocalin-like domain - - - - - - - - - - - - CrtC,Lipocalin_9 DYD2_k127_2052722_3 237368.SCABRO_03749 0.0002077 53.0 2C9DD@1|root,33PY4@2|Bacteria,2J20V@203682|Planctomycetes 203682|Planctomycetes - - - - - - - - - - - - - - - DYD2_k127_2052722_1 1499967.BAYZ01000069_gene1845 3.026e-54 201.0 COG1721@1|root,COG1721@2|Bacteria,2NNQI@2323|unclassified Bacteria 2|Bacteria S Protein of unknown function DUF58 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - - - - - - - - - - DUF58 DYD2_k127_2052722_0 945713.IALB_2058 8.579e-99 332.0 COG0714@1|root,COG0714@2|Bacteria 2|Bacteria KLT Associated with various cellular activities moxR - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 DYD2_k127_2052722_2 1499967.BAYZ01000019_gene6266 3.335e-26 116.0 COG2304@1|root,COG2304@2|Bacteria,2NP2F@2323|unclassified Bacteria 2|Bacteria S von Willebrand factor (vWF) type A domain batB - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - BatA,VWA,VWA_2 DYD2_k127_2057540_3 426368.MmarC7_1409 6.309e-18 88.0 COG4032@1|root,arCOG01613@2157|Archaea,2XYBY@28890|Euryarchaeota,23QS9@183939|Methanococci 183939|Methanococci S Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - GO:0003674,GO:0003824,GO:0006082,GO:0006732,GO:0006790,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019295,GO:0019296,GO:0044237,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0050545,GO:0051186,GO:0051188,GO:0071704,GO:1901576 4.1.1.79 ko:K06034 ko00680,ko01120,map00680,map01120 M00358 R05774 RC00506 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_N DYD2_k127_2057540_4 1449050.JNLE01000005_gene4466 5.965e-13 79.0 COG0715@1|root,COG0715@2|Bacteria,1TQN5@1239|Firmicutes,248IG@186801|Clostridia,36ENM@31979|Clostridiaceae 186801|Clostridia P ABC-type nitrate sulfonate bicarbonate transport - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1,NMT1_2 DYD2_k127_2057540_1 1500259.JQLD01000002_gene3359 1.388e-41 162.0 COG1028@1|root,COG1028@2|Bacteria,1R3U8@1224|Proteobacteria,2U1SI@28211|Alphaproteobacteria,4BFI8@82115|Rhizobiaceae 28211|Alphaproteobacteria IQ KR domain - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD2_k127_2057540_0 1071679.BG57_10300 3.61e-48 183.0 COG1028@1|root,COG1028@2|Bacteria,1N907@1224|Proteobacteria,2VJ81@28216|Betaproteobacteria,1K5DI@119060|Burkholderiaceae 28216|Betaproteobacteria IQ Short-chain dehydrogenase reductase sdr fabG2 - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD2_k127_2057540_2 797209.ZOD2009_17383 8.179e-21 99.0 arCOG12117@1|root,arCOG12117@2157|Archaea,2XXVR@28890|Euryarchaeota,23WGQ@183963|Halobacteria 183963|Halobacteria S Protein of unknown function (DUF3891) - - - - - - - - - - - - DUF3891 DYD2_k127_2066150_2 1267535.KB906767_gene1041 8.313e-16 87.0 2DMGW@1|root,32REM@2|Bacteria,3Y4XX@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - zf-B_box DYD2_k127_2066150_1 234267.Acid_0793 2.372e-46 174.0 COG1595@1|root,COG1595@2|Bacteria,3Y4HK@57723|Acidobacteria 57723|Acidobacteria K RNA polymerase sigma factor - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_2066150_3 1144275.COCOR_03470 1.283e-13 83.0 COG0392@1|root,COG0392@2|Bacteria,1N7DR@1224|Proteobacteria,42N4R@68525|delta/epsilon subdivisions,2WS5Z@28221|Deltaproteobacteria,2Z11V@29|Myxococcales 28221|Deltaproteobacteria S Lysylphosphatidylglycerol synthase TM region - - - ko:K07027 - - - - ko00000,ko02000 4.D.2 - - LPG_synthase_TM DYD2_k127_2066150_0 204669.Acid345_4041 7.197e-64 224.0 COG1327@1|root,COG1327@2|Bacteria,3Y4GA@57723|Acidobacteria,2JJC7@204432|Acidobacteriia 204432|Acidobacteriia K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes nrdR - - ko:K07738 - - - - ko00000,ko03000 - - - ATP-cone DYD2_k127_2066150_4 944479.JQLX01000010_gene571 1.832e-07 57.0 COG0071@1|root,COG0071@2|Bacteria,1N7C7@1224|Proteobacteria,42U0T@68525|delta/epsilon subdivisions,2WQ7I@28221|Deltaproteobacteria,2M76J@213113|Desulfurellales 28221|Deltaproteobacteria O CS domain hspA-1 - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD2_k127_2067665_1 1173028.ANKO01000018_gene1170 1.734e-10 68.0 COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria 2|Bacteria O protein N-acetylglucosaminyltransferase activity - - - - - - - - - - - - Glyco_transf_41,Glycos_transf_1,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8 DYD2_k127_2067665_2 983544.Lacal_2171 1.873e-08 62.0 COG3797@1|root,COG3797@2|Bacteria,4NSKS@976|Bacteroidetes,1I70K@117743|Flavobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1697) - - - - - - - - - - - - DUF1697 DYD2_k127_2067665_0 247490.KSU1_B0396 5.561e-161 516.0 COG3177@1|root,COG3177@2|Bacteria,2J0KB@203682|Planctomycetes 203682|Planctomycetes S Fic/DOC family N-terminal - - - - - - - - - - - - Fic,Fic_N DYD2_k127_2074608_0 573370.DMR_42800 1.499e-111 370.0 COG0463@1|root,COG0463@2|Bacteria,1MWE5@1224|Proteobacteria,42MCE@68525|delta/epsilon subdivisions,2WIYP@28221|Deltaproteobacteria,2MGAZ@213115|Desulfovibrionales 28221|Deltaproteobacteria M PFAM Glycosyl transferase family 2 - - 2.4.2.53 ko:K10012 ko00520,ko01503,map00520,map01503 M00721,M00761 R07661 RC00005,RC02954 ko00000,ko00001,ko00002,ko01000,ko01005,ko02000 4.D.2.1.8 GT2 - Glycos_transf_2 DYD2_k127_2074608_1 1499967.BAYZ01000014_gene6406 4.391e-59 215.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - 2.1.1.95 ko:K05928 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00112 R07236,R07504,R10491,R10492 RC00003,RC01662 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_11,Methyltransf_23,Methyltransf_25 DYD2_k127_2075922_1 498761.HM1_2639 4.493e-23 102.0 COG1975@1|root,COG1975@2|Bacteria,1UZDB@1239|Firmicutes,25D6N@186801|Clostridia 186801|Clostridia O Xanthine and CO dehydrogenases maturation factor XdhC CoxF - - - ko:K07402 - - - - ko00000 - - - XdhC_C,XdhC_CoxI DYD2_k127_2075922_0 1157490.EL26_22765 1.277e-36 140.0 COG4539@1|root,COG4539@2|Bacteria,1VJFX@1239|Firmicutes,4HQE3@91061|Bacilli,27A12@186823|Alicyclobacillaceae 91061|Bacilli S Protein of unknown function (DUF962) - - - - - - - - - - - - DUF962 DYD2_k127_2075922_2 525903.Taci_1381 9.191e-12 72.0 COG1975@1|root,COG1975@2|Bacteria,3TAJF@508458|Synergistetes 508458|Synergistetes O maturation factor XdhC CoxF family - - - ko:K07402 - - - - ko00000 - - - XdhC_C,XdhC_CoxI DYD2_k127_2097319_1 1123242.JH636435_gene2206 2.028e-83 287.0 COG0644@1|root,COG0644@2|Bacteria,2IX1U@203682|Planctomycetes 203682|Planctomycetes C COG0644 Dehydrogenases (flavoproteins) - - - - - - - - - - - - Trp_halogenase DYD2_k127_2097319_2 1283300.ATXB01000001_gene75 2.878e-38 148.0 COG1487@1|root,COG1487@2|Bacteria,1Q93F@1224|Proteobacteria,1TBXP@1236|Gammaproteobacteria,1XFVT@135618|Methylococcales 135618|Methylococcales S Toxic component of a toxin-antitoxin (TA) module. An RNase - - - ko:K18828 - - - - ko00000,ko01000,ko02048,ko03016 - - - PIN DYD2_k127_2097319_3 1304885.AUEY01000093_gene1587 5.314e-15 79.0 COG2161@1|root,COG2161@2|Bacteria,1NBSZ@1224|Proteobacteria,4332I@68525|delta/epsilon subdivisions,2WXB2@28221|Deltaproteobacteria,2MPCN@213118|Desulfobacterales 28221|Deltaproteobacteria D Antitoxin Phd_YefM, type II toxin-antitoxin system - - - - - - - - - - - - PhdYeFM_antitox DYD2_k127_2097319_0 502025.Hoch_2654 5.453e-149 486.0 COG2234@1|root,COG2234@2|Bacteria,1NE83@1224|Proteobacteria,437G6@68525|delta/epsilon subdivisions,2X2NS@28221|Deltaproteobacteria,2YU1Y@29|Myxococcales 28221|Deltaproteobacteria S Peptidase family M28 - - - - - - - - - - - - PA,Peptidase_M28 DYD2_k127_2097319_4 1267533.KB906733_gene3362 1.449e-10 66.0 COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,3Y7E7@57723|Acidobacteria,2JKGS@204432|Acidobacteriia 204432|Acidobacteriia K Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Trans_reg_C DYD2_k127_2097319_5 484770.UFO1_4756 1.554e-05 50.0 COG1304@1|root,COG1304@2|Bacteria,1UIFC@1239|Firmicutes,4H6YW@909932|Negativicutes 909932|Negativicutes C Glutamate synthase - - - - - - - - - - - - Glu_synthase DYD2_k127_2109315_0 1158610.UC3_01637 5.107e-24 113.0 COG0329@1|root,COG0329@2|Bacteria,1W758@1239|Firmicutes,4I3K2@91061|Bacilli,4B4WJ@81852|Enterococcaceae 91061|Bacilli E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) - - - - - - - - - - - - DHDPS DYD2_k127_2111419_3 717606.PaecuDRAFT_1199 1.588e-54 219.0 COG3468@1|root,COG3468@2|Bacteria,1UJR4@1239|Firmicutes,4ITDS@91061|Bacilli,26UFP@186822|Paenibacillaceae 91061|Bacilli MU cell surface receptor IPT TIG domain protein - - - - - - - - - - - - TIG DYD2_k127_2111419_0 204669.Acid345_4097 7.237e-80 299.0 COG3511@1|root,COG3511@2|Bacteria,3Y7KE@57723|Acidobacteria,2JMQB@204432|Acidobacteriia 204432|Acidobacteriia M Phosphoesterase family - - 3.1.3.64 ko:K21302 ko00562,ko01100,ko05152,map00562,map01100,map05152 - - - ko00000,ko00001,ko01000 - - - Phosphoesterase DYD2_k127_2111419_6 671143.DAMO_1282 5.721e-16 93.0 COG3291@1|root,COG3291@2|Bacteria 2|Bacteria S metallopeptidase activity celM - 3.2.1.4 ko:K01179,ko:K20276 ko00500,ko01100,ko02024,map00500,map01100,map02024 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - F5_F8_type_C,Glyco_hydro_44,Melibiase_2,NPCBM_assoc,PKD,PPC,Trypsin_2,VPEP DYD2_k127_2111419_5 1173028.ANKO01000062_gene2255 1.618e-20 107.0 COG2373@1|root,COG2931@1|root,COG2373@2|Bacteria,COG2931@2|Bacteria,1G02E@1117|Cyanobacteria,1H9TQ@1150|Oscillatoriales 1117|Cyanobacteria Q Hemolysin-type calcium-binding repeat (2 copies) - - - - - - - - - - - - Calx-beta,HemolysinCabind DYD2_k127_2111419_7 1078085.HMPREF1210_01396 2.33e-14 87.0 COG3568@1|root,COG3568@2|Bacteria,1V9H0@1239|Firmicutes,4HFXZ@91061|Bacilli,26F9N@186818|Planococcaceae 91061|Bacilli L endonuclease exonuclease phosphatase - - - - - - - - - - - - Exo_endo_phos DYD2_k127_2111419_1 1267535.KB906767_gene997 5.351e-70 248.0 COG1216@1|root,COG1216@2|Bacteria,3Y7F7@57723|Acidobacteria,2JMN5@204432|Acidobacteriia 204432|Acidobacteriia S PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_2111419_4 1541065.JRFE01000022_gene4053 9.394e-54 202.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glycos_transf_2,Methyltransf_11 DYD2_k127_2111419_2 1267534.KB906757_gene902 1.423e-59 213.0 COG1216@1|root,COG1216@2|Bacteria 2|Bacteria V Glycosyl transferase, family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_2120076_4 517418.Ctha_0180 1.343e-18 87.0 COG1508@1|root,COG1508@2|Bacteria,1FDRK@1090|Chlorobi 1090|Chlorobi K TIGRFAM RNA polymerase sigma-54 factor, RpoN - - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD DYD2_k127_2120076_3 1499967.BAYZ01000065_gene6104 6.916e-30 125.0 COG1544@1|root,COG1544@2|Bacteria,2NPYS@2323|unclassified Bacteria 2|Bacteria J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase raiA - - ko:K05808 - - - - ko00000,ko03009 - - - Ribosomal_S30AE DYD2_k127_2120076_0 1267535.KB906767_gene3160 6.851e-78 271.0 COG1660@1|root,COG1660@2|Bacteria,3Y2HM@57723|Acidobacteria,2JHJM@204432|Acidobacteriia 204432|Acidobacteriia S Displays ATPase and GTPase activities - - - ko:K06958 - - - - ko00000,ko03019 - - - ATP_bind_2 DYD2_k127_2120076_2 1499967.BAYZ01000065_gene6106 1.871e-31 128.0 COG2893@1|root,COG2893@2|Bacteria,2NRCX@2323|unclassified Bacteria 2|Bacteria G PTS system fructose IIA component manX - 2.7.1.191,2.7.1.194 ko:K02793,ko:K02794,ko:K02821 ko00051,ko00053,ko00520,ko01100,ko01120,ko02060,map00051,map00053,map00520,map01100,map01120,map02060 M00276,M00283,M00550 R02630,R07671 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.6.1,4.A.7.1 - - EIIA-man DYD2_k127_2120076_1 526222.Desal_2543 5.241e-39 158.0 COG1080@1|root,COG1080@2|Bacteria,1MUT8@1224|Proteobacteria,42P77@68525|delta/epsilon subdivisions,2WK7E@28221|Deltaproteobacteria,2M7ZP@213115|Desulfovibrionales 28221|Deltaproteobacteria G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) ptsI - 2.7.1.202,2.7.3.9 ko:K02768,ko:K08483,ko:K11183 ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060 M00273 R03232 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.2.1,8.A.7 - - EIIA-man,PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C,PTS-HPr DYD2_k127_212964_3 347834.RHE_CH01068 1.805e-14 86.0 COG1749@1|root,COG2133@1|root,COG3209@1|root,COG1749@2|Bacteria,COG2133@2|Bacteria,COG3209@2|Bacteria,1QW4H@1224|Proteobacteria,2TY5M@28211|Alphaproteobacteria 28211|Alphaproteobacteria GMN Domain of unknown function (DUF4082) - - - - - - - - - - - - DUF4082 DYD2_k127_212964_2 246197.MXAN_6492 2.947e-100 339.0 COG0673@1|root,COG0673@2|Bacteria,1N0VK@1224|Proteobacteria,43C12@68525|delta/epsilon subdivisions,2WXMX@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD2_k127_212964_0 204669.Acid345_2039 2.591e-179 583.0 COG0145@1|root,COG0145@2|Bacteria,3Y6D5@57723|Acidobacteria,2JKXC@204432|Acidobacteriia 204432|Acidobacteriia EQ Hydantoinase/oxoprolinase - - 3.5.2.14 ko:K01473 ko00330,ko01100,map00330,map01100 - R03187 RC00632 ko00000,ko00001,ko01000 - - - Hydant_A_N,Hydantoinase_A DYD2_k127_212964_1 478741.JAFS01000001_gene1421 1.579e-126 417.0 COG0146@1|root,COG0146@2|Bacteria,46UMR@74201|Verrucomicrobia,37G2Y@326457|unclassified Verrucomicrobia 74201|Verrucomicrobia EQ Hydantoinase B/oxoprolinase hyuB - 3.5.2.14 ko:K01474 ko00330,ko01100,map00330,map01100 - R03187 RC00632 ko00000,ko00001,ko01000 - - - Hydant_A_N,Hydantoinase_A,Hydantoinase_B DYD2_k127_2133518_0 1267533.KB906734_gene3960 3.846e-173 553.0 COG1197@1|root,COG1197@2|Bacteria,3Y3IE@57723|Acidobacteria,2JIHQ@204432|Acidobacteriia 204432|Acidobacteriia L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site mfd - - ko:K03723 ko03420,map03420 - - - ko00000,ko00001,ko01000,ko03400 - - - CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF DYD2_k127_2133518_1 1249627.D779_2786 1.357e-19 101.0 COG0760@1|root,COG0760@2|Bacteria,1MVB3@1224|Proteobacteria,1RMWU@1236|Gammaproteobacteria,1WVWN@135613|Chromatiales 135613|Chromatiales M Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation surA - 5.2.1.8 ko:K03771 - - - - ko00000,ko01000,ko03110 - - - Rotamase,SurA_N DYD2_k127_2137629_4 1121456.ATVA01000013_gene1063 1.181e-24 113.0 COG1267@1|root,COG1267@2|Bacteria,1MZJA@1224|Proteobacteria,42U6G@68525|delta/epsilon subdivisions,2WQDR@28221|Deltaproteobacteria,2MBXK@213115|Desulfovibrionales 28221|Deltaproteobacteria I Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) pgpA - 3.1.3.27 ko:K01095 ko00564,ko01100,map00564,map01100 - R02029 RC00017 ko00000,ko00001,ko01000 - - iAF987.Gmet_0195 PgpA DYD2_k127_2137629_1 383372.Rcas_3070 9.074e-86 294.0 COG0598@1|root,COG0598@2|Bacteria,2G6EQ@200795|Chloroflexi,375MB@32061|Chloroflexia 32061|Chloroflexia P Mediates influx of magnesium ions corA - - ko:K03284 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3 - - CorA DYD2_k127_2137629_0 1150626.PHAMO_570007 1.75e-158 515.0 COG0111@1|root,COG0111@2|Bacteria,1MU5Z@1224|Proteobacteria,2TR0F@28211|Alphaproteobacteria,2JPYH@204441|Rhodospirillales 204441|Rhodospirillales EH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family serA - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C,ACT DYD2_k127_2137629_5 1454004.AW11_01169 2.073e-20 102.0 COG1525@1|root,COG1525@2|Bacteria,1N145@1224|Proteobacteria,2VUA6@28216|Betaproteobacteria 28216|Betaproteobacteria L nuclease - - - - - - - - - - - - SNase DYD2_k127_2137629_6 316278.SynRCC307_2224 1.187e-08 66.0 COG0526@1|root,COG0526@2|Bacteria,1G5X2@1117|Cyanobacteria,1H0U8@1129|Synechococcus 1117|Cyanobacteria CO COG0526 Thiol-disulfide isomerase and thioredoxins txlA GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - - - - - - - - - iAPECO1_1312.trxA Thioredoxin DYD2_k127_2137629_2 1173026.Glo7428_2529 3.847e-72 251.0 COG3663@1|root,COG3663@2|Bacteria,1G66F@1117|Cyanobacteria 1117|Cyanobacteria L COG3663 G T U mismatch-specific DNA glycosylase - - 3.2.2.28 ko:K03649 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG DYD2_k127_2137629_3 401053.AciPR4_0485 1.447e-31 140.0 2E93F@1|root,333CD@2|Bacteria,3Y9CR@57723|Acidobacteria,2JP6M@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_214595_1 880072.Desac_2121 4.554e-05 52.0 COG0810@1|root,COG0810@2|Bacteria,1Q2CM@1224|Proteobacteria,437YZ@68525|delta/epsilon subdivisions,2X38U@28221|Deltaproteobacteria,2MSFC@213462|Syntrophobacterales 28221|Deltaproteobacteria U Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C DYD2_k127_214595_0 1343740.M271_31670 1.986e-08 64.0 COG0457@1|root,COG0457@2|Bacteria,2INUN@201174|Actinobacteria 201174|Actinobacteria G sequence-specific DNA binding - - - - - - - - - - - - NB-ARC,TPR_10,TPR_12,TPR_7 DYD2_k127_2159593_2 388051.AUFE01000044_gene3372 0.000877 44.0 COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2VIIA@28216|Betaproteobacteria,1K30G@119060|Burkholderiaceae 28216|Betaproteobacteria P TonB-dependent siderophore receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec DYD2_k127_2159593_1 1303518.CCALI_02289 2.587e-34 142.0 COG1994@1|root,COG1994@2|Bacteria 2|Bacteria S metallopeptidase activity - - - - - - - - - - - - Peptidase_M50B DYD2_k127_2159593_0 1382359.JIAL01000001_gene1621 3.161e-50 184.0 COG0315@1|root,COG0315@2|Bacteria,3Y4IY@57723|Acidobacteria,2JJ7K@204432|Acidobacteriia 204432|Acidobacteriia H Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) moaC - 4.6.1.17 ko:K03637 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R11372 RC03425 ko00000,ko00001,ko01000 - - - MoaC DYD2_k127_2164257_2 1210884.HG799462_gene8510 6.759e-43 175.0 COG2244@1|root,COG2244@2|Bacteria,2J05W@203682|Planctomycetes 203682|Planctomycetes S Polysaccharide biosynthesis protein - - - - - - - - - - - - MVIN,Polysacc_synt_3,Polysacc_synt_C DYD2_k127_2164257_3 211165.AJLN01000033_gene2688 3.278e-42 164.0 COG1213@1|root,COG1213@2|Bacteria,1GB2Z@1117|Cyanobacteria 1117|Cyanobacteria M Nucleotidyl transferase - - - - - - - - - - - - NTP_transf_3 DYD2_k127_2164257_5 880073.Calab_2963 6.122e-14 83.0 COG1887@1|root,COG1887@2|Bacteria,2NQIN@2323|unclassified Bacteria 2|Bacteria M CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase - - - - - - - - - - - - Glyphos_transf DYD2_k127_2164257_0 880073.Calab_2312 1.694e-110 387.0 COG5360@1|root,COG5360@2|Bacteria 2|Bacteria S Heparinase II/III-like protein - - - - - - - - - - - - Hepar_II_III,Hepar_II_III_N DYD2_k127_2164257_1 1173027.Mic7113_5259 3.772e-94 316.0 COG2264@1|root,COG2264@2|Bacteria,1GD45@1117|Cyanobacteria,1HEX6@1150|Oscillatoriales 1117|Cyanobacteria J Ribosomal protein L11 methyltransferase (PrmA) - - - - - - - - - - - - - DYD2_k127_2164257_4 1131812.JQMS01000001_gene175 5.612e-15 76.0 COG0367@1|root,COG0367@2|Bacteria,4NFQ3@976|Bacteroidetes,1HXV0@117743|Flavobacteriia,2NVCP@237|Flavobacterium 976|Bacteroidetes E Glutamine amidotransferase domain asnB - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_2172697_0 98439.AJLL01000096_gene4131 2.438e-145 474.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding DYD2_k127_2172697_1 179408.Osc7112_5184 8.65e-118 394.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H7F4@1150|Oscillatoriales 1117|Cyanobacteria Q Amino acid adenylation domain protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,TPR_1,TPR_8,Thioesterase DYD2_k127_2175345_2 234267.Acid_1024 3.688e-86 297.0 COG1073@1|root,COG1073@2|Bacteria 2|Bacteria S thiolester hydrolase activity luxD - 3.2.1.4,4.2.99.18 ko:K01179,ko:K06889,ko:K10773,ko:K15853 ko00500,ko01100,ko02020,ko02024,ko03410,map00500,map01100,map02020,map02024,map03410 - R06200,R11307,R11308 - ko00000,ko00001,ko01000,ko03400 - GH5,GH9 - Abhydrolase_1,Acyl_transf_2,DLH,DUF2048,Hydrolase_4,Peptidase_S9 DYD2_k127_2175345_0 1163409.UUA_02206 1.748e-139 457.0 COG3055@1|root,COG3055@2|Bacteria,1NHAC@1224|Proteobacteria,1RYBY@1236|Gammaproteobacteria,1XAGU@135614|Xanthomonadales 135614|Xanthomonadales S Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - - - - - - - - - - - DYD2_k127_2183076_1 1157943.KB892705_gene2336 2.178e-81 297.0 COG0515@1|root,COG3903@1|root,COG0515@2|Bacteria,COG3903@2|Bacteria,2GIZ1@201174|Actinobacteria,233DM@1762|Mycobacteriaceae 201174|Actinobacteria K involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein pknK_2 - 2.7.11.1 ko:K08282 - - - - ko00000,ko01000 - - - AAA_22,GerE,NB-ARC,Pkinase,TPR_12 DYD2_k127_2183076_2 63737.Npun_R2494 8.577e-38 149.0 COG0454@1|root,COG0456@2|Bacteria,1G7ME@1117|Cyanobacteria 1117|Cyanobacteria K PFAM Acetyltransferase (GNAT) family - - - ko:K03828 - - - - ko00000,ko01000 - - - Acetyltransf_1 DYD2_k127_2183076_0 485913.Krac_6031 3.675e-87 292.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - - - - - - - - - - GerE,Response_reg DYD2_k127_2183076_3 471852.Tcur_3280 1.828e-06 51.0 COG4585@1|root,COG4585@2|Bacteria,2HDZV@201174|Actinobacteria,4EGJI@85012|Streptosporangiales 201174|Actinobacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3 DYD2_k127_2190228_2 1192034.CAP_8237 1.89e-11 76.0 COG0437@1|root,COG0664@1|root,COG0437@2|Bacteria,COG0664@2|Bacteria,1QZTQ@1224|Proteobacteria,43CNM@68525|delta/epsilon subdivisions,2X2C7@28221|Deltaproteobacteria,2YX3F@29|Myxococcales 28221|Deltaproteobacteria CT 4Fe-4S dicluster domain - - - - - - - - - - - - Fer4_7,cNMP_binding DYD2_k127_2190228_0 1396418.BATQ01000070_gene740 3.328e-62 228.0 COG1472@1|root,COG1472@2|Bacteria,46S5G@74201|Verrucomicrobia,2ITMC@203494|Verrucomicrobiae 203494|Verrucomicrobiae G Glycosyl hydrolase family 3 N terminal domain - - 3.2.1.52 ko:K01207 ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501 M00628 R00022,R05963,R07809,R07810,R10831 RC00049 ko00000,ko00001,ko00002,ko01000 - - - Glyco_hydro_3 DYD2_k127_2190228_1 1235798.C817_03270 6.995e-25 112.0 COG0747@1|root,COG0747@2|Bacteria,1TQ6S@1239|Firmicutes,248A3@186801|Clostridia 186801|Clostridia E Family 5 - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 DYD2_k127_2191584_0 929562.Emtol_0970 1.898e-182 584.0 COG0624@1|root,COG0624@2|Bacteria,4NEA7@976|Bacteroidetes,47JSS@768503|Cytophagia 976|Bacteroidetes E Peptidase dimerisation domain - - - - - - - - - - - - M20_dimer,Peptidase_M20 DYD2_k127_2191584_1 497964.CfE428DRAFT_2876 3.831e-79 268.0 COG2818@1|root,COG2818@2|Bacteria,46SS9@74201|Verrucomicrobia 74201|Verrucomicrobia L Methyladenine glycosylase - - 3.2.2.20 ko:K01246 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Adenine_glyco DYD2_k127_2191584_2 926550.CLDAP_17880 8.852e-11 65.0 COG0353@1|root,COG0353@2|Bacteria,2G6CT@200795|Chloroflexi 200795|Chloroflexi L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO recR - - ko:K06187 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - HHH,RecR,Toprim_4 DYD2_k127_219404_3 204669.Acid345_0831 3.113e-12 76.0 COG3746@1|root,COG3746@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Porin_5 DYD2_k127_219404_0 929562.Emtol_1449 6.209e-144 477.0 COG1022@1|root,COG1022@2|Bacteria,4NEA4@976|Bacteroidetes,47K61@768503|Cytophagia 976|Bacteroidetes I AMP-binding enzyme fadD - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding DYD2_k127_219404_2 671143.DAMO_2346 1.309e-44 181.0 COG0484@1|root,COG3307@1|root,COG0484@2|Bacteria,COG3307@2|Bacteria,2NPHS@2323|unclassified Bacteria 2|Bacteria M O-Antigen ligase - - - ko:K02847 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01005,ko02000 9.B.67.4,9.B.67.5 - - DnaJ,Wzy_C DYD2_k127_219404_4 107636.JQNK01000009_gene2696 1.013e-08 67.0 COG0457@1|root,COG0457@2|Bacteria,1RD7S@1224|Proteobacteria,2VGXY@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_219404_1 439235.Dalk_0708 2.053e-65 235.0 COG0472@1|root,COG1086@1|root,COG0472@2|Bacteria,COG1086@2|Bacteria,1MWYW@1224|Proteobacteria,42NVY@68525|delta/epsilon subdivisions,2X5IH@28221|Deltaproteobacteria,2MQ3P@213118|Desulfobacterales 28221|Deltaproteobacteria M PFAM Glycosyl transferase family 4 - - 2.7.8.33,2.7.8.35 ko:K02851 - - R08856 RC00002 ko00000,ko01000,ko01003,ko01005 - - - CoA_binding_3,Glycos_transf_4 DYD2_k127_2204773_0 479434.Sthe_3515 3.658e-62 230.0 COG0028@1|root,COG0028@2|Bacteria,2G9ZD@200795|Chloroflexi,27XQW@189775|Thermomicrobia 189775|Thermomicrobia EH Belongs to the TPP enzyme family - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N DYD2_k127_2204773_3 1208921.ST1E_0241 2.012e-28 122.0 COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,2VIAW@28216|Betaproteobacteria,1KPVK@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria O Posttranslational modification, protein turnover, chaperones sspA - - ko:K03599 - - - - ko00000,ko02000,ko03021 1.A.12.3.1 - - GST_C,GST_C_2,GST_N,GST_N_3 DYD2_k127_2204773_2 1365176.N186_06945 1.962e-40 161.0 COG0329@1|root,arCOG04172@2157|Archaea,2XQ5Y@28889|Crenarchaeota 28889|Crenarchaeota E PFAM Dihydrodipicolinate synthetase - - 4.1.3.3,4.3.3.7 ko:K01639,ko:K01714 ko00261,ko00300,ko00520,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map00520,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R01811,R10147 RC00159,RC00600,RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD2_k127_2204773_1 1097668.BYI23_C003130 2.136e-44 166.0 COG0043@1|root,COG0043@2|Bacteria,1MU62@1224|Proteobacteria,2WBWM@28216|Betaproteobacteria,1K6TM@119060|Burkholderiaceae 28216|Betaproteobacteria H 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - - - - - - - - - - UbiD DYD2_k127_220991_6 509191.AEDB02000074_gene1799 5.434e-34 137.0 COG0584@1|root,COG0584@2|Bacteria,1V3W4@1239|Firmicutes,24AVJ@186801|Clostridia,3WIKJ@541000|Ruminococcaceae 186801|Clostridia C glycerophosphoryl diester phosphodiesterase glpQ - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - GDPD DYD2_k127_220991_7 234267.Acid_2866 7.331e-14 82.0 2DBU8@1|root,2ZB4S@2|Bacteria,3Y31B@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function (DUF3108) - - - - - - - - - - - - DUF3108 DYD2_k127_220991_5 861299.J421_3339 6.652e-39 153.0 COG2020@1|root,COG2020@2|Bacteria,1ZU79@142182|Gemmatimonadetes 142182|Gemmatimonadetes O Phospholipid methyltransferase - - - - - - - - - - - - PEMT DYD2_k127_220991_4 401526.TcarDRAFT_1317 1.912e-49 190.0 COG0859@1|root,COG0859@2|Bacteria,1TRN2@1239|Firmicutes,4H25K@909932|Negativicutes 909932|Negativicutes M lipopolysaccharide heptosyltransferase rfaF - - ko:K02841,ko:K02843 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 DYD2_k127_220991_3 909663.KI867150_gene798 5.401e-52 190.0 COG0615@1|root,COG0615@2|Bacteria,1REW3@1224|Proteobacteria,42SGQ@68525|delta/epsilon subdivisions,2WPTP@28221|Deltaproteobacteria,2MQJ3@213462|Syntrophobacterales 28221|Deltaproteobacteria H Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose rfaE - - - - - - - - - - - CTP_transf_like DYD2_k127_220991_0 215803.DB30_0005 1.133e-76 269.0 COG2870@1|root,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,42MBC@68525|delta/epsilon subdivisions,2WIKU@28221|Deltaproteobacteria,2YYUP@29|Myxococcales 28221|Deltaproteobacteria M Phosphomethylpyrimidine kinase hldE GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 ko:K03272 ko00540,ko01100,map00540,map01100 M00064 R05644,R05646 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - iAF987.Gmet_0922 CTP_transf_like,PfkB DYD2_k127_220991_2 748449.Halha_2292 7.054e-62 219.0 COG0241@1|root,COG0241@2|Bacteria,1V6XD@1239|Firmicutes,24IZ4@186801|Clostridia 186801|Clostridia E D,d-heptose 1,7-bisphosphate phosphatase - - 3.1.3.82,3.1.3.83 ko:K03273 ko00540,ko01100,map00540,map01100 M00064 R05647,R09771 RC00017 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hydrolase_like DYD2_k127_220991_1 269799.Gmet_2345 1.78e-73 261.0 COG0859@1|root,COG0859@2|Bacteria,1MXA2@1224|Proteobacteria,42NEW@68525|delta/epsilon subdivisions,2WJNJ@28221|Deltaproteobacteria,43S6D@69541|Desulfuromonadales 28221|Deltaproteobacteria M Glycosyltransferase family 9 (heptosyltransferase) - - - ko:K02843 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 DYD2_k127_220991_8 1429916.X566_01175 7.223e-12 70.0 COG0451@1|root,COG0451@2|Bacteria,1QUEV@1224|Proteobacteria,2TW46@28211|Alphaproteobacteria,3JQZM@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria M Polysaccharide biosynthesis protein rfbE - 5.1.3.10 ko:K12454 ko00520,map00520 - R04266 RC00528 ko00000,ko00001,ko01000 - - - Epimerase,GDP_Man_Dehyd DYD2_k127_2209984_0 388467.A19Y_2223 2.817e-276 882.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H837@1150|Oscillatoriales 1117|Cyanobacteria Q Non-ribosomal peptide synthetase modules and related mcyA - - ko:K16130 ko01054,map01054 - - - ko00000,ko00001,ko01008 - - - AMP-binding,AMP-binding_C,Condensation,McyA_C,Methyltransf_12,PP-binding,PilZ DYD2_k127_2209984_1 221288.JH992901_gene3915 1.018e-162 526.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1JI65@1189|Stigonemataceae 1117|Cyanobacteria Q Condensation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,TPR_1,TPR_8,Thioesterase DYD2_k127_2213833_0 240015.ACP_0923 1.61e-196 634.0 COG2234@1|root,COG2234@2|Bacteria,3Y33F@57723|Acidobacteria,2JI7G@204432|Acidobacteriia 204432|Acidobacteriia S Transferrin receptor-like dimerisation domain - - 3.4.17.21 ko:K01301 - - - - ko00000,ko01000,ko01002 - - - PA,Peptidase_M28,TFR_dimer DYD2_k127_2221774_0 562970.Btus_0636 5.751e-131 424.0 COG1053@1|root,COG1053@2|Bacteria,1TPAR@1239|Firmicutes,4HBVG@91061|Bacilli,277ZQ@186823|Alicyclobacillaceae 91061|Bacilli C SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 sdhA - 1.3.5.1,1.3.5.4 ko:K00239 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C DYD2_k127_2221774_1 1280.SAXN108_1144 2.845e-103 341.0 COG0479@1|root,COG0479@2|Bacteria,1TP17@1239|Firmicutes,4HAG7@91061|Bacilli,4GX8N@90964|Staphylococcaceae 91061|Bacilli C succinate dehydrogenase sdhB GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 ko:K00240 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - Fer2_3,Fer4_10,Fer4_8 DYD2_k127_2221774_2 349161.Dred_3090 6.034e-58 226.0 COG2114@1|root,COG4252@1|root,COG2114@2|Bacteria,COG4252@2|Bacteria,1UYB2@1239|Firmicutes,24AKI@186801|Clostridia,263E3@186807|Peptococcaceae 186801|Clostridia T CHASE2 - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - CHASE2,Guanylate_cyc DYD2_k127_2231080_0 240015.ACP_1472 6.362e-178 584.0 COG1674@1|root,COG1674@2|Bacteria,3Y3CJ@57723|Acidobacteria,2JHRN@204432|Acidobacteriia 204432|Acidobacteriia D Ftsk_gamma - - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma DYD2_k127_2245415_2 472759.Nhal_1374 7.804e-97 318.0 COG4805@1|root,COG4805@2|Bacteria,1R5EP@1224|Proteobacteria,1RRS6@1236|Gammaproteobacteria 1236|Gammaproteobacteria S protein conserved in bacteria - - - - - - - - - - - - DUF885 DYD2_k127_2245415_1 1267534.KB906759_gene1791 2.762e-108 357.0 2CEY7@1|root,2Z8CG@2|Bacteria 2|Bacteria S membrane - - - - - - - - - - - - - DYD2_k127_2245415_0 1267534.KB906759_gene1792 1.022e-305 944.0 COG1053@1|root,COG1053@2|Bacteria 2|Bacteria C succinate dehydrogenase sdhA GO:0000104,GO:0000166,GO:0001539,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006091,GO:0006113,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016491,GO:0016627,GO:0022607,GO:0022900,GO:0030030,GO:0030031,GO:0032991,GO:0033554,GO:0036094,GO:0040011,GO:0043167,GO:0043168,GO:0044085,GO:0044237,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044780,GO:0044781,GO:0045273,GO:0045274,GO:0045283,GO:0045284,GO:0045333,GO:0048037,GO:0048870,GO:0050660,GO:0050662,GO:0050896,GO:0051179,GO:0051674,GO:0051716,GO:0055114,GO:0070469,GO:0070470,GO:0070925,GO:0071840,GO:0071944,GO:0071949,GO:0071973,GO:0097159,GO:0097588,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363 1.3.5.1,1.3.5.4 ko:K00239 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C DYD2_k127_2278703_3 1386089.N865_08770 7.278e-96 346.0 COG1361@1|root,COG2931@1|root,COG3210@1|root,COG1361@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria 2|Bacteria U domain, Protein - - 3.2.1.65 ko:K01212,ko:K12287,ko:K20276 ko00500,ko02024,map00500,map02024 - R05624,R11311 RC03278 ko00000,ko00001,ko01000,ko02044 - GH32 - Big_3_2,DUF11,HemolysinCabind,SdrD_B DYD2_k127_2278703_1 767817.Desgi_1433 1.729e-159 518.0 COG0365@1|root,COG0365@2|Bacteria,1UMN9@1239|Firmicutes,25GME@186801|Clostridia 186801|Clostridia I AMP-binding enzyme C-terminal domain - - 6.2.1.32 ko:K08295 ko00627,ko01120,map00627,map01120 - R00982 RC00004,RC00174 ko00000,ko00001,ko01000 - - - AMP-binding,AMP-binding_C DYD2_k127_2278703_5 1117647.M5M_17215 9.916e-61 220.0 COG3483@1|root,COG3483@2|Bacteria,1MW68@1224|Proteobacteria,1RXYM@1236|Gammaproteobacteria,1JAQ6@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria E Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety kynA GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 ko:K00453 ko00380,ko01100,map00380,map01100 M00038 R00678 RC00356 ko00000,ko00001,ko00002,ko01000 - - - Trp_dioxygenase DYD2_k127_2278703_2 234267.Acid_2875 1.341e-150 486.0 COG3844@1|root,COG3844@2|Bacteria,3Y984@57723|Acidobacteria 57723|Acidobacteria F Aminotransferase class-V - - 3.7.1.3 ko:K01556 ko00380,ko01100,map00380,map01100 M00038 R00987,R02668,R03936 RC00284,RC00415 ko00000,ko00001,ko00002,ko01000 - - - Aminotran_5 DYD2_k127_2278703_0 502025.Hoch_0175 9.277e-207 653.0 COG1902@1|root,COG1902@2|Bacteria,1R4A8@1224|Proteobacteria,42YBR@68525|delta/epsilon subdivisions,2WU33@28221|Deltaproteobacteria,2YXDW@29|Myxococcales 28221|Deltaproteobacteria C NADH oxidase - - - - - - - - - - - - Oxidored_FMN DYD2_k127_2278703_4 1231391.AMZF01000027_gene357 2.127e-74 257.0 COG0654@1|root,COG0654@2|Bacteria,1QW6Y@1224|Proteobacteria,2WF70@28216|Betaproteobacteria 28216|Betaproteobacteria CH FAD binding domain - - - - - - - - - - - - FAD_binding_3 DYD2_k127_2295605_1 682795.AciX8_4217 2.259e-72 250.0 2ADVU@1|root,313MT@2|Bacteria,3Y7R2@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_2295605_2 1123242.JH636436_gene515 3.78e-70 248.0 COG0694@1|root,COG2146@1|root,COG0694@2|Bacteria,COG2146@2|Bacteria,2J1F7@203682|Planctomycetes 203682|Planctomycetes O NifU-like domain - - - - - - - - - - - - NifU DYD2_k127_2295605_0 1267533.KB906737_gene1730 5.537e-91 299.0 COG0374@1|root,COG0374@2|Bacteria,3Y3C2@57723|Acidobacteria,2JJUU@204432|Acidobacteriia 204432|Acidobacteriia C Nickel-dependent hydrogenase - - 1.12.99.6 ko:K06281 ko00633,ko01120,map00633,map01120 - R08034 RC00250 ko00000,ko00001,ko01000 - - - NiFeSe_Hases DYD2_k127_2301378_0 1120973.AQXL01000130_gene1193 1.208e-40 162.0 COG1404@1|root,COG1404@2|Bacteria,1UZRQ@1239|Firmicutes,4HEVW@91061|Bacilli 91061|Bacilli O Subtilase family - - - ko:K17734 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S8,SLH DYD2_k127_2301378_1 661478.OP10G_3165 8.848e-36 158.0 28JU0@1|root,2Z9J3@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2304304_0 518766.Rmar_0304 2.751e-100 337.0 COG1600@1|root,COG1600@2|Bacteria,4NFCJ@976|Bacteroidetes,1FJQT@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes C 4Fe-4S double cluster binding domain queG - 1.17.99.6 ko:K18979 - - - - ko00000,ko01000,ko03016 - - - DUF1730,Fer4_16 DYD2_k127_2304304_1 1122138.AQUZ01000016_gene284 0.0003551 50.0 COG4319@1|root,COG4319@2|Bacteria,2IMG5@201174|Actinobacteria 201174|Actinobacteria S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 DYD2_k127_2304304_2 1123393.KB891327_gene316 0.0008826 50.0 2E5C5@1|root,33046@2|Bacteria,1NNAA@1224|Proteobacteria,2W6KD@28216|Betaproteobacteria,1KT4P@119069|Hydrogenophilales 119069|Hydrogenophilales S Calcium/calmodulin dependent protein kinase II association domain - - - - - - - - - - - - DUF4440 DYD2_k127_2324376_2 234267.Acid_4062 0.0005175 51.0 COG3391@1|root,COG4447@1|root,COG3391@2|Bacteria,COG4447@2|Bacteria,3Y31A@57723|Acidobacteria 57723|Acidobacteria U cellulose binding - - - - - - - - - - - - - DYD2_k127_2324376_1 1538295.JY96_07815 2.01e-05 55.0 COG2165@1|root,COG2165@2|Bacteria,1MZ5I@1224|Proteobacteria,2VU7P@28216|Betaproteobacteria,1KMIP@119065|unclassified Burkholderiales 28216|Betaproteobacteria NU Type II secretory pathway, pseudopilin - - - - - - - - - - - - - DYD2_k127_2324376_0 338966.Ppro_1700 2.254e-40 153.0 COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,42RJX@68525|delta/epsilon subdivisions,2WP0F@28221|Deltaproteobacteria,43SHY@69541|Desulfuromonadales 28221|Deltaproteobacteria J Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide trmL - 2.1.1.207 ko:K03216 - - - - ko00000,ko01000,ko03016 - - - SpoU_methylase DYD2_k127_2326401_0 420324.KI912061_gene6194 1.295e-151 505.0 COG0642@1|root,COG3850@1|root,COG2205@2|Bacteria,COG3850@2|Bacteria,1NRP8@1224|Proteobacteria,2TX3Q@28211|Alphaproteobacteria,1JXBR@119045|Methylobacteriaceae 28211|Alphaproteobacteria T GAF domain - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,Response_reg,dCache_1 DYD2_k127_2326401_3 316055.RPE_0439 3.097e-32 130.0 COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria 28211|Alphaproteobacteria S protein conserved in bacteria - - - - - - - - - - - - DUF559 DYD2_k127_2326401_1 420324.KI912061_gene6195 1.24e-53 202.0 COG1999@1|root,COG1999@2|Bacteria,1N6WC@1224|Proteobacteria,2VFHX@28211|Alphaproteobacteria 1224|Proteobacteria S SCO1/SenC - - - ko:K07152 - - - - ko00000,ko03029 - - - AhpC-TSA,SCO1-SenC DYD2_k127_2326401_2 420324.KI911952_gene3297 2.556e-41 154.0 COG0715@1|root,COG0715@2|Bacteria,1MW0S@1224|Proteobacteria,2VFHT@28211|Alphaproteobacteria 28211|Alphaproteobacteria P NMT1-like family - - - - - - - - - - - - NMT1_2 DYD2_k127_232758_2 1382304.JNIL01000001_gene3282 1.997e-108 358.0 COG1960@1|root,COG1960@2|Bacteria,1TP57@1239|Firmicutes,4HB0J@91061|Bacilli,2785Q@186823|Alicyclobacillaceae 91061|Bacilli I Acyl-CoA dehydrogenase, N-terminal domain fadE - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD2_k127_232758_4 237368.SCABRO_01687 0.0001545 47.0 2F76J@1|root,33ZMZ@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_232758_1 278963.ATWD01000002_gene447 3.063e-167 534.0 COG0183@1|root,COG0183@2|Bacteria,3Y2U4@57723|Acidobacteria,2JIS1@204432|Acidobacteriia 204432|Acidobacteriia I Thiolase, C-terminal domain - - 2.3.1.16 ko:K00632 ko00071,ko00280,ko00281,ko00362,ko00592,ko00642,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00362,map00592,map00642,map01100,map01110,map01120,map01130,map01212 M00087,M00113 R00829,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747,R05506,R05586,R07891,R07895,R07899,R08091,R08095 RC00004,RC00326,RC00405,RC01702,RC02728,RC02898,RC02955 ko00000,ko00001,ko00002,ko01000 - - - Thiolase_C,Thiolase_N DYD2_k127_232758_0 198467.NP92_07845 3.487e-275 874.0 COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1TR8J@1239|Firmicutes,4H9XN@91061|Bacilli,21VD1@150247|Anoxybacillus 91061|Bacilli I 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain fadN - 1.1.1.35 ko:K07516 ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212 M00087 R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000 - - iYO844.BSU32840 3HCDH,3HCDH_N,ECH_1 DYD2_k127_232758_3 760568.Desku_2413 1.185e-08 64.0 COG0358@1|root,COG0358@2|Bacteria,1UYVG@1239|Firmicutes,24GCV@186801|Clostridia,2647J@186807|Peptococcaceae 186801|Clostridia L Domain of unknown function (DUF3854) - - - - - - - - - - - - DUF3854 DYD2_k127_2327695_1 189753.AXAS01000100_gene6801 4.627e-103 377.0 COG2203@1|root,COG4191@1|root,COG2203@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TTJ0@28211|Alphaproteobacteria,3JS5D@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria T Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,PAS_7,dCache_1 DYD2_k127_2327695_0 1385519.N801_15195 6.178e-136 479.0 COG0642@1|root,COG2205@2|Bacteria,2I2M2@201174|Actinobacteria,4FFYD@85021|Intrasporangiaceae 201174|Actinobacteria T GAF domain - - - - - - - - - - - - DUF3365,GAF_2,HAMP,HATPase_c,HisKA,Response_reg DYD2_k127_2327695_2 395495.Lcho_0046 3.371e-30 123.0 COG0745@1|root,COG0745@2|Bacteria,1RD7E@1224|Proteobacteria,2VVWD@28216|Betaproteobacteria,1KPCJ@119065|unclassified Burkholderiales 28216|Betaproteobacteria T PFAM response regulator receiver - - - ko:K11443 ko02020,ko04112,map02020,map04112 M00511 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg DYD2_k127_2334041_2 1121335.Clst_2266 8.591e-10 70.0 2BZCW@1|root,32R4U@2|Bacteria,1V7B7@1239|Firmicutes 1239|Firmicutes S Domain of unknown function (DUF4129) - - - - - - - - - - - - DUF4129 DYD2_k127_2334041_1 1312959.KI914677_gene2133 5.325e-10 71.0 COG4223@1|root,COG4223@2|Bacteria,2I390@201174|Actinobacteria,1W9UN@1268|Micrococcaceae 201174|Actinobacteria DZ transferase activity, transferring acyl groups other than amino-acyl groups - - - - - - - - - - - - GPDPase_memb DYD2_k127_2334041_0 234267.Acid_3565 1.463e-234 769.0 COG1470@1|root,COG1470@2|Bacteria 2|Bacteria S cell adhesion involved in biofilm formation - - - ko:K13735,ko:K20276 ko02024,ko05100,map02024,map05100 - - - ko00000,ko00001 - - - ASH,CarboxypepD_reg,DUF11,FlgD_ig,HYR,Laminin_G_3,Plug,TonB_dep_Rec DYD2_k127_2335482_8 228410.NE2443 2.7e-07 51.0 COG1463@1|root,COG1463@2|Bacteria,1RHH6@1224|Proteobacteria,2VV58@28216|Betaproteobacteria,372SM@32003|Nitrosomonadales 28216|Betaproteobacteria Q Protein of unknown function (DUF3465) - - - - - - - - - - - - DUF3465 DYD2_k127_2335482_7 314285.KT71_07814 3.129e-10 65.0 COG1463@1|root,COG1463@2|Bacteria,1RHH6@1224|Proteobacteria,1S74Q@1236|Gammaproteobacteria,1J9X3@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria Q Protein of unknown function (DUF3465) - - - - - - - - - - - - DUF3465 DYD2_k127_2335482_0 472759.Nhal_3579 1.236e-69 237.0 2BC31@1|root,325MS@2|Bacteria,1NBYV@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_2335482_5 251229.Chro_0246 1.596e-26 109.0 COG1598@1|root,COG1598@2|Bacteria,1G985@1117|Cyanobacteria,3VKSV@52604|Pleurocapsales 1117|Cyanobacteria S HicB_like antitoxin of bacterial toxin-antitoxin system - - - - - - - - - - - - HicB_lk_antitox DYD2_k127_2335482_6 251229.Chro_0245 1.414e-16 79.0 COG1724@1|root,COG1724@2|Bacteria,1G91K@1117|Cyanobacteria,3VKRB@52604|Pleurocapsales 1117|Cyanobacteria N HicA toxin of bacterial toxin-antitoxin, - - - - - - - - - - - - HicA_toxin DYD2_k127_2335482_3 867903.ThesuDRAFT_02055 1.273e-35 141.0 COG0537@1|root,COG0537@2|Bacteria,1VB6J@1239|Firmicutes,24UA3@186801|Clostridia 186801|Clostridia FG HIT family hydrolase, diadenosine tetraphosphate hydrolase - - - - - - - - - - - - HIT DYD2_k127_2335482_4 404589.Anae109_4177 1.165e-29 123.0 COG0454@1|root,COG0456@2|Bacteria,1PYGZ@1224|Proteobacteria,435DK@68525|delta/epsilon subdivisions,2WZR5@28221|Deltaproteobacteria,2Z2JT@29|Myxococcales 28221|Deltaproteobacteria K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 DYD2_k127_2335482_2 706587.Desti_1107 2.283e-49 181.0 COG2080@1|root,COG2080@2|Bacteria,1PGQD@1224|Proteobacteria,434AK@68525|delta/epsilon subdivisions,2X9WM@28221|Deltaproteobacteria,2MRQZ@213462|Syntrophobacterales 28221|Deltaproteobacteria C [2Fe-2S] binding domain - - 1.2.5.3 ko:K03518 - - R11168 RC02800 ko00000,ko01000 - - - Fer2,Fer2_2 DYD2_k127_2335482_1 309801.trd_A0069 8.603e-61 221.0 COG1529@1|root,COG1529@2|Bacteria,2G65D@200795|Chloroflexi,27Y2Q@189775|Thermomicrobia 189775|Thermomicrobia C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - - - - - - - - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_2343115_0 1144275.COCOR_03383 1.754e-78 278.0 COG1414@1|root,COG1414@2|Bacteria,1QVN4@1224|Proteobacteria,42V7J@68525|delta/epsilon subdivisions,2WS12@28221|Deltaproteobacteria 28221|Deltaproteobacteria K O-methyltransferase - - - - - - - - - - - - Dimerisation2,Methyltransf_2 DYD2_k127_2343115_1 1163408.UU9_05909 1.244e-35 153.0 29CWC@1|root,2ZZUG@2|Bacteria,1P21V@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_2353672_0 1205680.CAKO01000040_gene680 9.116e-23 101.0 COG2329@1|root,COG2329@2|Bacteria,1NDM8@1224|Proteobacteria,2UG48@28211|Alphaproteobacteria,2JY9Y@204441|Rhodospirillales 204441|Rhodospirillales S Antibiotic biosynthesis monooxygenase - - - - - - - - - - - - - DYD2_k127_2353672_1 394.NGR_c36990 1.161e-16 84.0 COG3791@1|root,COG3791@2|Bacteria,1RBIH@1224|Proteobacteria,2U5D0@28211|Alphaproteobacteria,4BEY0@82115|Rhizobiaceae 28211|Alphaproteobacteria S Glutathione-dependent formaldehyde-activating - - - - - - - - - - - - GFA DYD2_k127_2353672_3 1120948.KB903217_gene1047 4.548e-07 53.0 2E3SC@1|root,32YPX@2|Bacteria,2HPCF@201174|Actinobacteria,4E4BJ@85010|Pseudonocardiales 201174|Actinobacteria S Protein of unknown function (DUF1059) - - - - - - - - - - - - DUF1059 DYD2_k127_2353672_2 1040989.AWZU01000065_gene6524 9.661e-14 76.0 COG2203@1|root,COG5002@1|root,COG2203@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2TWPQ@28211|Alphaproteobacteria,3K6KM@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria T Cache domain - - - - - - - - - - - - dCache_1 DYD2_k127_2355813_1 504472.Slin_3267 2.42e-43 168.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,4NFTM@976|Bacteroidetes,47NS1@768503|Cytophagia 976|Bacteroidetes EU Dienelactone hydrolase family - - - - - - - - - - - - DPPIV_N,PD40,Peptidase_S9 DYD2_k127_2355813_2 1499967.BAYZ01000009_gene5337 0.0008778 50.0 2EKNX@1|root,33ECP@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2355813_0 1267535.KB906767_gene2173 1.419e-47 186.0 COG2304@1|root,COG2304@2|Bacteria,3Y3QQ@57723|Acidobacteria,2JHV1@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor, type A - - - - - - - - - - - - VWA DYD2_k127_2361305_0 243090.RB4667 4.881e-92 317.0 COG1520@1|root,COG1520@2|Bacteria 243090.RB4667|- S amino acid activation for nonribosomal peptide biosynthetic process - - - - - - - - - - - - - DYD2_k127_2361305_1 1068980.ARVW01000001_gene4340 7.059e-43 181.0 COG4188@1|root,COG4188@2|Bacteria,2I3KQ@201174|Actinobacteria,4DZZ4@85010|Pseudonocardiales 201174|Actinobacteria S dienelactone hydrolase - - - - - - - - - - - - Big_3_5,Calx-beta,Chlorophyllase2 DYD2_k127_2362701_0 443143.GM18_2293 1.957e-110 368.0 COG0343@1|root,COG0343@2|Bacteria,1MUCA@1224|Proteobacteria,42M5Y@68525|delta/epsilon subdivisions,2WIMT@28221|Deltaproteobacteria,43TNC@69541|Desulfuromonadales 28221|Deltaproteobacteria J Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) tgt - 2.4.2.29 ko:K00773 - - R03789,R10209 RC00063 ko00000,ko01000,ko03016 - - - TGT DYD2_k127_2362701_2 1265505.ATUG01000003_gene431 1.188e-18 88.0 COG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,42V1U@68525|delta/epsilon subdivisions,2WR76@28221|Deltaproteobacteria,2MKCK@213118|Desulfobacterales 28221|Deltaproteobacteria U Preprotein translocase subunit yajC - - ko:K03210 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - YajC DYD2_k127_2362701_1 204669.Acid345_0146 8.813e-65 239.0 COG0342@1|root,COG0342@2|Bacteria,3Y37S@57723|Acidobacteria,2JHJC@204432|Acidobacteriia 204432|Acidobacteriia U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD - - ko:K03072 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG DYD2_k127_2370162_8 926550.CLDAP_11130 1.295e-15 78.0 COG0165@1|root,COG0165@2|Bacteria,2G616@200795|Chloroflexi 200795|Chloroflexi E argininosuccinate lyase argH GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 ko:K01755 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230 M00029,M00844,M00845 R01086 RC00445,RC00447 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ASL_C2,Lyase_1 DYD2_k127_2370162_6 1273125.Rrhod_0024 3.235e-20 95.0 COG1438@1|root,COG1438@2|Bacteria,2GKA5@201174|Actinobacteria,4FW9V@85025|Nocardiaceae 201174|Actinobacteria K Regulates arginine biosynthesis genes argR GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - ko:K03402 - - - - ko00000,ko03000 - - - Arg_repressor,Arg_repressor_C DYD2_k127_2370162_0 1123371.ATXH01000003_gene1979 1.737e-177 563.0 COG0137@1|root,COG0137@2|Bacteria,2GGZY@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria E Belongs to the argininosuccinate synthase family. Type 1 subfamily argG - 6.3.4.5 ko:K01940 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418 M00029,M00844,M00845 R01954 RC00380,RC00629 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Arginosuc_synth DYD2_k127_2370162_4 518766.Rmar_0949 2.321e-78 274.0 COG1763@1|root,COG1763@2|Bacteria,4PM6G@976|Bacteroidetes,1FK05@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes H Mo-molybdopterin cofactor biosynthetic process - - - - - - - - - - - - - DYD2_k127_2370162_3 1286171.EAL2_c12110 1.792e-81 284.0 COG0002@1|root,COG0002@2|Bacteria,1TPVI@1239|Firmicutes,247R3@186801|Clostridia,25V2D@186806|Eubacteriaceae 186801|Clostridia E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde argC - 1.2.1.38 ko:K00145 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R03443 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC DYD2_k127_2370162_1 518766.Rmar_0947 5.663e-107 359.0 COG4992@1|root,COG4992@2|Bacteria,4NE0Z@976|Bacteroidetes,1FJWU@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes H Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - 2.6.1.11,2.6.1.17 ko:K00821 ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00028,M00845 R02283,R04475 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 DYD2_k127_2370162_7 665942.HMPREF1022_03068 1.21e-15 79.0 2EFVT@1|root,339N0@2|Bacteria,1NGTP@1224|Proteobacteria,431SW@68525|delta/epsilon subdivisions,2X6H0@28221|Deltaproteobacteria,2ME2K@213115|Desulfovibrionales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_2370162_2 1254432.SCE1572_00430 3.874e-94 319.0 COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,42M0Q@68525|delta/epsilon subdivisions,2WJ3G@28221|Deltaproteobacteria,2YYG6@29|Myxococcales 28221|Deltaproteobacteria E Belongs to the ATCase OTCase family argF GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 ko:K00611,ko:K09065 ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230 M00029,M00844,M00845 R01398,R07245 RC00096 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N DYD2_k127_2370162_5 644281.MFS40622_0435 1.551e-73 257.0 COG0548@1|root,arCOG00862@2157|Archaea,2XTW9@28890|Euryarchaeota,23Q6D@183939|Methanococci 183939|Methanococci E Belongs to the acetylglutamate kinase family. ArgB subfamily argB GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 ko:K00930 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R02649 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase DYD2_k127_2378320_2 1254432.SCE1572_35005 1.562e-137 443.0 COG3195@1|root,COG4266@1|root,COG3195@2|Bacteria,COG4266@2|Bacteria,1MXJK@1224|Proteobacteria,42YE0@68525|delta/epsilon subdivisions,2X30N@28221|Deltaproteobacteria,2YTWS@29|Myxococcales 28221|Deltaproteobacteria F Belongs to the allantoicase family alc - 3.5.3.4 ko:K01477 ko00230,ko01100,ko01120,map00230,map01100,map01120 M00546 R02422 RC00379,RC00712 ko00000,ko00001,ko00002,ko01000 - - - Allantoicase,OHCU_decarbox DYD2_k127_2378320_4 1254432.SCE1572_35005 1.45e-43 165.0 COG3195@1|root,COG4266@1|root,COG3195@2|Bacteria,COG4266@2|Bacteria,1MXJK@1224|Proteobacteria,42YE0@68525|delta/epsilon subdivisions,2X30N@28221|Deltaproteobacteria,2YTWS@29|Myxococcales 28221|Deltaproteobacteria F Belongs to the allantoicase family alc - 3.5.3.4 ko:K01477 ko00230,ko01100,ko01120,map00230,map01100,map01120 M00546 R02422 RC00379,RC00712 ko00000,ko00001,ko00002,ko01000 - - - Allantoicase,OHCU_decarbox DYD2_k127_2378320_6 28042.GU90_05015 1.715e-30 124.0 COG2351@1|root,COG2351@2|Bacteria,2IQUN@201174|Actinobacteria,4E5V4@85010|Pseudonocardiales 201174|Actinobacteria S Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily uraH - 3.5.2.17 ko:K07127 ko00230,ko01100,ko01120,map00230,map01100,map01120 M00546 R06601 RC03393 ko00000,ko00001,ko00002,ko01000,ko02000 9.B.35.1.2,9.B.35.2 - - Transthyretin DYD2_k127_2378320_3 1265503.KB905168_gene1309 1.613e-69 245.0 COG3748@1|root,COG3748@2|Bacteria,1MWHB@1224|Proteobacteria,1RRV4@1236|Gammaproteobacteria,2Q6F0@267889|Colwelliaceae 1236|Gammaproteobacteria S Urate oxidase N-terminal - - - - - - - - - - - - Urate_ox_N DYD2_k127_2378320_0 234267.Acid_1539 2.029e-199 635.0 COG0457@1|root,COG0457@2|Bacteria,3Y3PD@57723|Acidobacteria 57723|Acidobacteria S Peptidase family M49 - - - - - - - - - - - - Peptidase_M49 DYD2_k127_2378320_1 1454004.AW11_01665 4.27e-177 569.0 COG2301@1|root,COG2301@2|Bacteria,1R7U2@1224|Proteobacteria 1224|Proteobacteria G Belongs to the HpcH HpaI aldolase family - - - - - - - - - - - - HpcH_HpaI DYD2_k127_2378320_7 1094508.Tsac_1170 1.072e-07 62.0 COG4194@1|root,COG4194@2|Bacteria,1UY2R@1239|Firmicutes,24BZZ@186801|Clostridia 186801|Clostridia S Membrane - - - - - - - - - - - - DUF1648 DYD2_k127_2378320_5 296591.Bpro_0713 3.707e-37 149.0 COG4974@1|root,COG4974@2|Bacteria,1MXZX@1224|Proteobacteria,2VICA@28216|Betaproteobacteria,4AEM5@80864|Comamonadaceae 28216|Betaproteobacteria L COG0582 Integrase - - - - - - - - - - - - Phage_int_SAM_1,Phage_integrase DYD2_k127_2386755_6 1040989.AWZU01000011_gene4140 8.779e-17 79.0 COG2192@1|root,COG2192@2|Bacteria,1MWBA@1224|Proteobacteria,2TV6G@28211|Alphaproteobacteria,3JR7Q@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria O symbiont process - - - ko:K00612 - - - - ko00000,ko01000 - - - Carbam_trans_C,Carbam_trans_N DYD2_k127_2386755_5 466038.KI421440_gene1091 6.875e-17 82.0 2EGPU@1|root,33AFZ@2|Bacteria,1NH69@1224|Proteobacteria,2UJXH@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_2386755_4 1430440.MGMSRv2_3469 3.354e-22 97.0 2E3ZS@1|root,32YWP@2|Bacteria,1NAZV@1224|Proteobacteria,2UGW3@28211|Alphaproteobacteria,2JXCF@204441|Rhodospirillales 204441|Rhodospirillales - - - - - - - - - - - - - - - DYD2_k127_2386755_1 595536.ADVE02000001_gene3015 3.301e-70 246.0 COG5433@1|root,COG5433@2|Bacteria,1MY25@1224|Proteobacteria,2U0Y8@28211|Alphaproteobacteria,36ZP7@31993|Methylocystaceae 28211|Alphaproteobacteria L Transposase DDE domain group 1 - - - - - - - - - - - - DDE_Tnp_1_4 DYD2_k127_2386755_3 1121106.JQKB01000149_gene5391 1.313e-30 123.0 COG5433@1|root,COG5433@2|Bacteria,1MY25@1224|Proteobacteria,2U0Y8@28211|Alphaproteobacteria 28211|Alphaproteobacteria L PFAM transposase, IS4 family protein - - - - - - - - - - - - DDE_Tnp_1_4 DYD2_k127_2386755_7 1134912.AJTV01000038_gene3334 5.069e-15 82.0 COG5433@1|root,COG5433@2|Bacteria 2|Bacteria L transposase activity - - - - - - - - - - - - DDE_Tnp_1_4 DYD2_k127_2386755_0 1248916.ANFY01000005_gene2794 1.403e-121 406.0 COG2148@1|root,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2TRZA@28211|Alphaproteobacteria,2K10K@204457|Sphingomonadales 204457|Sphingomonadales M sugar transferase - - - - - - - - - - - - Bac_transf,CoA_binding_3 DYD2_k127_2386755_8 231434.JQJH01000010_gene798 4.519e-05 48.0 COG3039@1|root,COG3039@2|Bacteria,1MVTU@1224|Proteobacteria,2TVIR@28211|Alphaproteobacteria 28211|Alphaproteobacteria L hmm pf01609 - - - ko:K07481 - - - - ko00000 - - - DDE_Tnp_1,DDE_Tnp_1_6,DUF772 DYD2_k127_2386755_2 489825.LYNGBM3L_05860 3.342e-47 181.0 COG4424@1|root,COG4424@2|Bacteria,1G29K@1117|Cyanobacteria,1HAQB@1150|Oscillatoriales 1117|Cyanobacteria S Sulfotransferase domain - - - - - - - - - - - - Sulfotransfer_1,Sulfotransfer_3 DYD2_k127_2393608_2 1232410.KI421420_gene3141 9.483e-42 161.0 COG0569@1|root,COG0569@2|Bacteria,1R7KM@1224|Proteobacteria,42PJH@68525|delta/epsilon subdivisions,2WMZT@28221|Deltaproteobacteria,43SGD@69541|Desulfuromonadales 28221|Deltaproteobacteria P UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ktrA - - ko:K03499 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkA_C,TrkA_N DYD2_k127_2393608_1 1125863.JAFN01000001_gene1001 4.405e-101 347.0 COG0168@1|root,COG0168@2|Bacteria,1N412@1224|Proteobacteria,42MBI@68525|delta/epsilon subdivisions,2WIZ9@28221|Deltaproteobacteria 28221|Deltaproteobacteria P PFAM Cation transporter ktrB - - ko:K03498 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkH DYD2_k127_2393608_4 1340493.JNIF01000003_gene3584 0.0008562 43.0 COG1801@1|root,COG1801@2|Bacteria 2|Bacteria L Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD2_k127_2393608_3 671143.DAMO_0383 8.6e-09 61.0 COG1801@1|root,COG1801@2|Bacteria,2NPDU@2323|unclassified Bacteria 2|Bacteria S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD2_k127_2393608_0 1267535.KB906767_gene3267 1.247e-165 534.0 COG2239@1|root,COG2239@2|Bacteria,3Y7A9@57723|Acidobacteria 57723|Acidobacteria P Divalent cation transporter - - - - - - - - - - - - CBS,MgtE,MgtE_N DYD2_k127_2394642_0 234267.Acid_3931 2.211e-229 722.0 COG2866@1|root,COG2866@2|Bacteria,3Y3X8@57723|Acidobacteria 57723|Acidobacteria E Peptidase M14, carboxypeptidase A - - - - - - - - - - - - Peptidase_M14 DYD2_k127_2394642_2 755178.Cyan10605_2040 2.748e-24 103.0 2E90H@1|root,3339X@2|Bacteria,1G9EW@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_2394642_1 530564.Psta_3388 6.291e-130 459.0 COG0457@1|root,COG0457@2|Bacteria,2IZTX@203682|Planctomycetes 203682|Planctomycetes S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_2398524_1 1267535.KB906767_gene3760 1.9e-103 341.0 COG0702@1|root,COG0702@2|Bacteria,3Y3QX@57723|Acidobacteria,2JJ6V@204432|Acidobacteriia 204432|Acidobacteriia GM NAD(P)H-binding - - - - - - - - - - - - NAD_binding_10 DYD2_k127_2398524_4 1267535.KB906767_gene1910 1.916e-45 168.0 COG4566@1|root,COG4566@2|Bacteria,3Y58V@57723|Acidobacteria,2JJQJ@204432|Acidobacteriia 204432|Acidobacteriia T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg DYD2_k127_2398524_2 1267535.KB906767_gene1911 2.915e-82 281.0 COG4566@1|root,COG4566@2|Bacteria,3Y4GS@57723|Acidobacteria,2JJ1Z@204432|Acidobacteriia 204432|Acidobacteriia T helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg DYD2_k127_2398524_0 235985.BBPN01000003_gene4632 1.101e-103 342.0 COG1075@1|root,COG1075@2|Bacteria,2I2U3@201174|Actinobacteria,2NJ2A@228398|Streptacidiphilus 201174|Actinobacteria S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_6 DYD2_k127_2398524_5 366602.Caul_0147 4.654e-37 155.0 COG1917@1|root,COG1917@2|Bacteria,1RB5Y@1224|Proteobacteria,2U5TF@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Cupin 2, conserved barrel domain protein - - - - - - - - - - - - - DYD2_k127_2398524_3 709797.CSIRO_1353 1.283e-56 213.0 COG0596@1|root,COG0596@2|Bacteria,1MUVB@1224|Proteobacteria,2TREP@28211|Alphaproteobacteria,3JSR6@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 DYD2_k127_2400468_3 1120949.KB903299_gene5967 2.131e-06 59.0 COG3629@1|root,COG3903@1|root,COG3629@2|Bacteria,COG3903@2|Bacteria,2GIRS@201174|Actinobacteria,4D9K4@85008|Micromonosporales 201174|Actinobacteria T Bacterial transcriptional activator domain - - - - - - - - - - - - BTAD,NB-ARC,TPR_10,TPR_12,TPR_7,Trans_reg_C DYD2_k127_2400468_1 756272.Plabr_2113 6.053e-29 118.0 2BZBR@1|root,32YH6@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Transgly_assoc DYD2_k127_2400468_0 1173023.KE650771_gene251 6.226e-148 487.0 COG1174@1|root,COG1732@1|root,COG1174@2|Bacteria,COG1732@2|Bacteria,1G1ZS@1117|Cyanobacteria,1JHEY@1189|Stigonemataceae 1117|Cyanobacteria M Substrate binding domain of ABC-type glycine betaine transport system - - - ko:K05845,ko:K05846 ko02010,map02010 M00209 - - ko00000,ko00001,ko00002,ko02000 3.A.1.12 - - BPD_transp_1,OpuAC DYD2_k127_2400468_2 1173028.ANKO01000052_gene1669 5.348e-24 103.0 COG1125@1|root,COG1125@2|Bacteria,1G21Q@1117|Cyanobacteria,1HA99@1150|Oscillatoriales 1117|Cyanobacteria E SMART ATPase, AAA type, core - - - ko:K05847 ko02010,map02010 M00209 - - ko00000,ko00001,ko00002,ko02000 3.A.1.12 - - ABC_tran,CBS DYD2_k127_2407612_2 497965.Cyan7822_1788 9.804e-39 154.0 COG4913@1|root,COG4913@2|Bacteria 2|Bacteria D Putative exonuclease SbcCD, C subunit - - - - - - - - - - - - AAA_29,SbcCD_C DYD2_k127_2407612_3 1122619.KB892303_gene887 2.512e-27 118.0 2CB46@1|root,31GHU@2|Bacteria,1NGIC@1224|Proteobacteria,2VQSQ@28216|Betaproteobacteria 28216|Betaproteobacteria S Domain of unknown function (DUF4194) - - - - - - - - - - - - DUF4194 DYD2_k127_2407612_1 102125.Xen7305DRAFT_00049680 6.565e-78 279.0 COG4942@1|root,COG4942@2|Bacteria 2|Bacteria D peptidase - - - - - - - - - - - - DUF3375 DYD2_k127_2407612_0 113395.AXAI01000002_gene5219 4.663e-130 439.0 COG2203@1|root,COG4191@1|root,COG2203@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TTJ0@28211|Alphaproteobacteria,3JS5D@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria T Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,PAS_7,dCache_1 DYD2_k127_2413169_0 443143.GM18_2435 1.812e-182 580.0 COG4962@1|root,COG4962@2|Bacteria,1R7EN@1224|Proteobacteria,42NAK@68525|delta/epsilon subdivisions,2WIYX@28221|Deltaproteobacteria,43SA4@69541|Desulfuromonadales 28221|Deltaproteobacteria U PFAM type II secretion system protein E - - - ko:K02283,ko:K03609 - - - - ko00000,ko02035,ko02044,ko03036,ko04812 - - - CbiA,FHA,T2SSE DYD2_k127_2413169_1 1120985.AUMI01000014_gene1066 1.006e-53 205.0 COG4753@1|root,COG4963@1|root,COG4753@2|Bacteria,COG4963@2|Bacteria,1UF2S@1239|Firmicutes,4H306@909932|Negativicutes 909932|Negativicutes KTU cheY-homologous receiver domain - - - - - - - - - - - - AAA_31,Response_reg DYD2_k127_2413169_2 425104.Ssed_2368 2.055e-11 71.0 COG4961@1|root,COG4961@2|Bacteria,1N2QC@1224|Proteobacteria,1SB8M@1236|Gammaproteobacteria,2QC8J@267890|Shewanellaceae 1236|Gammaproteobacteria U TadE-like protein - - - - - - - - - - - - TadE DYD2_k127_2413169_3 402626.Rpic_0584 5.922e-09 64.0 COG4961@1|root,COG4961@2|Bacteria,1N1EM@1224|Proteobacteria,2VW42@28216|Betaproteobacteria,1KDGD@119060|Burkholderiaceae 28216|Betaproteobacteria U TadE-like protein - - - - - - - - - - - - TadE DYD2_k127_2413169_4 1215092.PA6_007_00070 8.43e-06 57.0 COG4961@1|root,COG4961@2|Bacteria,1R58C@1224|Proteobacteria,1S1A4@1236|Gammaproteobacteria,1YHRR@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria U Putative Flp pilus-assembly TadE/G-like - - - - - - - - - - - - Tad DYD2_k127_2423716_0 234267.Acid_4784 2.198e-111 377.0 COG0591@1|root,COG0591@2|Bacteria,3Y419@57723|Acidobacteria 57723|Acidobacteria E Sodium:solute symporter family - - - - - - - - - - - - SSF DYD2_k127_2423716_1 1267535.KB906767_gene5053 1.335e-77 270.0 COG2367@1|root,COG2367@2|Bacteria,3Y3UF@57723|Acidobacteria 57723|Acidobacteria V Beta-lactamase enzyme family - - 3.5.2.6 ko:K17836 ko00311,ko01130,ko01501,map00311,map01130,map01501 M00627,M00628 R06363 RC01499 ko00000,ko00001,ko00002,ko01000,ko01504 - - - Beta-lactamase2 DYD2_k127_2423716_2 40571.JOEA01000010_gene2894 2.918e-12 70.0 COG2103@1|root,COG2103@2|Bacteria,2GN0K@201174|Actinobacteria,4DYJ9@85010|Pseudonocardiales 201174|Actinobacteria G Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate murQ - 4.2.1.126 ko:K07106 ko00520,ko01100,map00520,map01100 - R08555 RC00397,RC00746 ko00000,ko00001,ko01000 - - - BcrAD_BadFG,SIS,SIS_2 DYD2_k127_2427901_0 1267535.KB906767_gene4686 6.467e-148 487.0 COG1305@1|root,COG1305@2|Bacteria,3Y3A2@57723|Acidobacteria 57723|Acidobacteria E Domain of Unknown Function with PDB structure (DUF3857) - - - - - - - - - - - - DUF3857,Transglut_core DYD2_k127_2429674_3 349966.DJ58_495 7.866e-23 103.0 COG4214@1|root,COG4214@2|Bacteria,1MXXS@1224|Proteobacteria,1RNWF@1236|Gammaproteobacteria,41EDH@629|Yersinia 1236|Gammaproteobacteria U xylose transport system permease protein XylH xylH GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005996,GO:0006810,GO:0008150,GO:0008152,GO:0008643,GO:0015144,GO:0015145,GO:0015749,GO:0016020,GO:0016021,GO:0019321,GO:0022857,GO:0031224,GO:0034219,GO:0042732,GO:0044238,GO:0044281,GO:0044425,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071944 - ko:K10544,ko:K10547 ko02010,map02010 M00215,M00216 - - ko00000,ko00001,ko00002,ko02000 3.A.1.2.4,3.A.1.2.5 - iEC55989_1330.EC55989_4023 BPD_transp_2 DYD2_k127_2429674_0 264732.Moth_2021 1.418e-172 556.0 COG1129@1|root,COG1129@2|Bacteria,1TP6I@1239|Firmicutes,247II@186801|Clostridia,42ESS@68295|Thermoanaerobacterales 186801|Clostridia P Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system xylG - 3.6.3.17 ko:K10441,ko:K10545 ko02010,map02010 M00212,M00215 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.2.1,3.A.1.2.13,3.A.1.2.19,3.A.1.2.4 - - ABC_tran DYD2_k127_2429674_2 525903.Taci_1495 6.317e-38 146.0 COG0399@1|root,COG0399@2|Bacteria 2|Bacteria E UDP-4-amino-4-deoxy-L-arabinose aminotransferase - - 2.6.1.102 ko:K13010 ko00520,map00520 - R10460 RC00006,RC00781 ko00000,ko00001,ko01000,ko01005,ko01007 - - - 23S_rRNA_IVP DYD2_k127_2429674_1 1382358.JHVN01000004_gene2646 1.501e-39 149.0 COG4213@1|root,COG4213@2|Bacteria,1TR3Q@1239|Firmicutes,4HCK3@91061|Bacilli,21UZ3@150247|Anoxybacillus 91061|Bacilli G Periplasmic binding protein domain - - - ko:K02058,ko:K10543 ko02010,map02010 M00215,M00221 - - ko00000,ko00001,ko00002,ko02000 3.A.1.2,3.A.1.2.4 - - Peripla_BP_4 DYD2_k127_2429894_1 1382359.JIAL01000001_gene2620 1.468e-59 221.0 COG0750@1|root,COG0750@2|Bacteria,3Y2KN@57723|Acidobacteria,2JI1B@204432|Acidobacteriia 204432|Acidobacteriia M Peptidase family M50 - - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ_2,Peptidase_M50 DYD2_k127_2429894_0 1121468.AUBR01000029_gene1577 1.16e-132 434.0 COG0821@1|root,COG0821@2|Bacteria,1TPFR@1239|Firmicutes,247N1@186801|Clostridia,42FDK@68295|Thermoanaerobacterales 186801|Clostridia I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate ispG - 1.17.7.1,1.17.7.3 ko:K03526 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R08689,R10859 RC01486 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS06430 GcpE DYD2_k127_2449604_1 1254432.SCE1572_19815 3.628e-54 198.0 COG1030@1|root,COG1030@2|Bacteria,1MUJN@1224|Proteobacteria,42MWM@68525|delta/epsilon subdivisions,2WK3H@28221|Deltaproteobacteria,2YZNI@29|Myxococcales 28221|Deltaproteobacteria O NfeD-like C-terminal, partner-binding nfeD - - ko:K07403 - - - - ko00000 - - - CLP_protease,NfeD,SDH_sah DYD2_k127_2449604_0 1537994.JQFW01000001_gene3530 4.15e-60 216.0 COG2267@1|root,COG2267@2|Bacteria,1R79U@1224|Proteobacteria,1S3DE@1236|Gammaproteobacteria,469I6@72275|Alteromonadaceae 1236|Gammaproteobacteria I Serine aminopeptidase, S33 phaG - - ko:K18100 ko02024,ko02025,map02024,map02025 - - - ko00000,ko00001,ko01000,ko01003 - GT1 - Abhydrolase_1,Hydrolase_4 DYD2_k127_2452160_0 1283300.ATXB01000001_gene1141 4.484e-75 256.0 COG4974@1|root,COG4974@2|Bacteria,1MVAN@1224|Proteobacteria,1RMSS@1236|Gammaproteobacteria,1XE2N@135618|Methylococcales 135618|Methylococcales L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_int_SAM_4,Phage_integrase DYD2_k127_2452160_2 1123401.JHYQ01000002_gene2650 3.367e-40 154.0 COG4974@1|root,COG4974@2|Bacteria,1MVAN@1224|Proteobacteria,1RMSS@1236|Gammaproteobacteria,460A2@72273|Thiotrichales 72273|Thiotrichales L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_int_SAM_4,Phage_integrase DYD2_k127_2452160_3 1521187.JPIM01000022_gene637 1.734e-11 65.0 COG4422@1|root,COG4422@2|Bacteria,2G7TP@200795|Chloroflexi 200795|Chloroflexi S Protein of unknown function (DUF5131) - - - - - - - - - - - - DUF5131 DYD2_k127_2452160_4 314278.NB231_02303 9.036e-11 62.0 COG1724@1|root,COG1724@2|Bacteria,1NP7S@1224|Proteobacteria,1SUVY@1236|Gammaproteobacteria,1X1KJ@135613|Chromatiales 135613|Chromatiales N periplasmic or secreted lipoprotein - - - - - - - - - - - - - DYD2_k127_2458760_2 316274.Haur_0838 1.265e-97 330.0 COG2204@1|root,COG2204@2|Bacteria,2G5ZP@200795|Chloroflexi 200795|Chloroflexi T Two component, sigma54 specific, transcriptional regulator, Fis family - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_2458760_3 1162668.LFE_0389 5.187e-40 163.0 COG3850@1|root,COG4191@1|root,COG3850@2|Bacteria,COG4191@2|Bacteria,3J14D@40117|Nitrospirae 40117|Nitrospirae T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,dCache_1 DYD2_k127_2458760_5 1173024.KI912148_gene2488 3.913e-15 87.0 COG0642@1|root,COG0784@1|root,COG3829@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,COG3829@2|Bacteria,1G09B@1117|Cyanobacteria 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - DUF4118,GAF_2,HATPase_c,HisKA,PAS_3,PAS_9,Response_reg DYD2_k127_2458760_4 1380394.JADL01000002_gene1628 5.759e-34 134.0 COG5552@1|root,COG5552@2|Bacteria,1MZBV@1224|Proteobacteria,2UC5C@28211|Alphaproteobacteria,2JXIK@204441|Rhodospirillales 204441|Rhodospirillales S Uncharacterized conserved protein (DUF2277) - - - - - - - - - - - - DUF2277 DYD2_k127_2458760_0 485913.Krac_7219 7.111e-163 520.0 28JHC@1|root,2Z9AX@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Glyco_hydro_18 DYD2_k127_2458760_6 1267535.KB906767_gene4145 3.266e-11 66.0 COG1629@1|root,COG1629@2|Bacteria,3Y2JN@57723|Acidobacteria,2JI08@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_2458760_1 234267.Acid_3565 2.594e-105 364.0 COG1470@1|root,COG1470@2|Bacteria 2|Bacteria S cell adhesion involved in biofilm formation - - - ko:K13735,ko:K20276 ko02024,ko05100,map02024,map05100 - - - ko00000,ko00001 - - - ASH,CarboxypepD_reg,DUF11,FlgD_ig,HYR,Laminin_G_3,Plug,TonB_dep_Rec DYD2_k127_246732_0 204669.Acid345_3335 4.976e-97 343.0 COG2206@1|root,COG5000@1|root,COG2206@2|Bacteria,COG5000@2|Bacteria,3Y7I5@57723|Acidobacteria,2JMTE@204432|Acidobacteriia 204432|Acidobacteriia T HD domain - - - - - - - - - - - - HD DYD2_k127_2468520_0 1502850.FG91_03420 5.347e-101 357.0 COG3193@1|root,COG3193@2|Bacteria,1R3RC@1224|Proteobacteria,2U39K@28211|Alphaproteobacteria,2K2UI@204457|Sphingomonadales 204457|Sphingomonadales S Haem-degrading - - - - - - - - - - - - Haem_degrading DYD2_k127_2468520_4 502025.Hoch_6281 1.793e-08 66.0 COG0484@1|root,COG0484@2|Bacteria,1Q629@1224|Proteobacteria 1224|Proteobacteria C heat shock protein binding - - - - - - - - - - - - Cytochrom_c3_2,Cytochrome_C554,Cytochrome_C7,Paired_CXXCH_1 DYD2_k127_2468520_2 243231.GSU2210 4.854e-10 70.0 COG0484@1|root,COG0484@2|Bacteria,1QXP1@1224|Proteobacteria,43C4V@68525|delta/epsilon subdivisions,2X7F8@28221|Deltaproteobacteria,43W46@69541|Desulfuromonadales 28221|Deltaproteobacteria C Cytochrome c7 and related cytochrome c - - - - - - - - - - - - Cytochrome_C7 DYD2_k127_2468520_3 697282.Mettu_2279 2.07e-09 63.0 COG1598@1|root,COG1598@2|Bacteria,1NBIX@1224|Proteobacteria,1SCV3@1236|Gammaproteobacteria 1236|Gammaproteobacteria S HicB_like antitoxin of bacterial toxin-antitoxin system - - - - - - - - - - - - HicB_lk_antitox DYD2_k127_2468520_6 237368.SCABRO_03595 0.0003798 44.0 COG2442@1|root,COG2442@2|Bacteria,2J1H3@203682|Planctomycetes 203682|Planctomycetes S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_2468520_5 237368.SCABRO_03594 3.196e-06 50.0 COG4634@1|root,COG4634@2|Bacteria,2J1C4@203682|Planctomycetes 203682|Planctomycetes - - - - - - - - - - - - - - - DYD2_k127_2468520_1 234267.Acid_1618 9.825e-20 98.0 COG4916@1|root,COG4916@2|Bacteria 2|Bacteria S TIR domain - - - - - - - - - - - - TIR_2 DYD2_k127_2474793_0 1183438.GKIL_1262 9.703e-47 172.0 COG1432@1|root,COG1432@2|Bacteria,1G01P@1117|Cyanobacteria 1117|Cyanobacteria S COGs COG1432 conserved - - - - - - - - - - - - NYN DYD2_k127_2474793_1 292459.STH3115 1.764e-33 135.0 COG0566@1|root,COG0566@2|Bacteria,1TP9G@1239|Firmicutes,247SC@186801|Clostridia 186801|Clostridia J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family yacO - 2.1.1.185 ko:K03218 - - - - ko00000,ko01000,ko03009 - - - SpoU_methylase,SpoU_sub_bind DYD2_k127_2476412_0 243231.GSU0004 8.187e-228 721.0 COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,42KZ9@68525|delta/epsilon subdivisions,2WJBC@28221|Deltaproteobacteria,43T5S@69541|Desulfuromonadales 28221|Deltaproteobacteria L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrA - 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV DYD2_k127_2506863_1 1304275.C41B8_18181 6.361e-197 626.0 COG0437@1|root,COG3301@1|root,COG0437@2|Bacteria,COG3301@2|Bacteria,1MU1B@1224|Proteobacteria,1SYJH@1236|Gammaproteobacteria 1236|Gammaproteobacteria C 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - - - - - - - - - - Fer4_11,Fer4_3,Fer4_7 DYD2_k127_2506863_0 525909.Afer_1020 7.565e-314 975.0 COG0243@1|root,COG0243@2|Bacteria,2GNYQ@201174|Actinobacteria,4CNGZ@84992|Acidimicrobiia 84992|Acidimicrobiia C Molybdopterin oxidoreductase Fe4S4 domain - - - - - - - - - - - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding DYD2_k127_250833_0 886293.Sinac_0554 6.542e-108 364.0 COG0515@1|root,COG1716@1|root,COG0515@2|Bacteria,COG1716@2|Bacteria,2J2EJ@203682|Planctomycetes 203682|Planctomycetes KLT Forkhead associated domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - FHA,Pkinase DYD2_k127_250833_1 1144275.COCOR_02951 1.285e-57 220.0 COG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria,42Q67@68525|delta/epsilon subdivisions,2WKZ1@28221|Deltaproteobacteria,2YUQ6@29|Myxococcales 28221|Deltaproteobacteria KLT serine threonine protein kinase - - 2.7.11.1 ko:K08884,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - AAA_16,Pkinase,TPR_12,zinc_ribbon_2 DYD2_k127_251607_1 1123269.NX02_19545 5.141e-99 349.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1R6VI@1224|Proteobacteria,2U4V7@28211|Alphaproteobacteria,2K029@204457|Sphingomonadales 204457|Sphingomonadales EU Prolyl oligopeptidase family - - - - - - - - - - - - PD40,Peptidase_S9 DYD2_k127_251607_0 1340493.JNIF01000003_gene3421 2.59e-260 839.0 COG1629@1|root,COG1629@2|Bacteria,3Y67H@57723|Acidobacteria 57723|Acidobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_2525439_0 1267535.KB906767_gene4789 1.858e-129 421.0 COG1064@1|root,COG1064@2|Bacteria,3Y34K@57723|Acidobacteria,2JIU5@204432|Acidobacteriia 204432|Acidobacteriia S Zinc-binding alcohol dehydrogenase family protein - - 1.1.1.1 ko:K13953 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N DYD2_k127_2525439_1 518766.Rmar_0018 9.003e-113 369.0 COG0330@1|root,COG0330@2|Bacteria,4NFPK@976|Bacteroidetes,1FK37@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes O SPFH domain-Band 7 family - - - - - - - - - - - - Band_7 DYD2_k127_2525439_2 314278.NB231_00740 3.297e-97 335.0 COG1030@1|root,COG1030@2|Bacteria,1MUJN@1224|Proteobacteria,1RN3U@1236|Gammaproteobacteria,1WXRD@135613|Chromatiales 135613|Chromatiales O NfeD-like C-terminal, partner-binding - - - ko:K07403 - - - - ko00000 - - - NfeD DYD2_k127_2525439_3 1123008.KB905711_gene791 4.153e-10 63.0 COG3568@1|root,COG3568@2|Bacteria,4NHXV@976|Bacteroidetes,2FNR3@200643|Bacteroidia,22W7F@171551|Porphyromonadaceae 976|Bacteroidetes S Endonuclease/Exonuclease/phosphatase family - - - - - - - - - - - - Exo_endo_phos DYD2_k127_2528939_1 1121920.AUAU01000020_gene2543 2.168e-19 97.0 COG0457@1|root,COG0457@2|Bacteria 1121920.AUAU01000020_gene2543|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_2528939_0 1304880.JAGB01000001_gene423 0.0 1038.0 COG3459@1|root,COG3459@2|Bacteria,1TQY8@1239|Firmicutes,248YP@186801|Clostridia 186801|Clostridia G Glycosyltransferase 36 associated ndvB - - - - - - - - - - - DUF3131,Glyco_hydro_36,Glyco_transf_36,Glycoamylase DYD2_k127_2544025_0 864051.BurJ1DRAFT_2047 7.398e-98 343.0 COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2VWI8@28216|Betaproteobacteria 28216|Betaproteobacteria O Subtilase family - - - - - - - - - - - - Peptidase_S8 DYD2_k127_2544589_0 204669.Acid345_0970 4.918e-79 269.0 COG1136@1|root,COG1136@2|Bacteria,3Y3JD@57723|Acidobacteria,2JIHH@204432|Acidobacteriia 204432|Acidobacteriia V ABC transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_2544589_2 278963.ATWD01000001_gene3234 0.0001798 53.0 COG2834@1|root,COG2834@2|Bacteria,3Y4A1@57723|Acidobacteria,2JJ5F@204432|Acidobacteriia 204432|Acidobacteriia M Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - - - - - - - - - - DUF4292 DYD2_k127_2546233_2 472759.Nhal_2071 4.292e-42 168.0 COG2121@1|root,COG2121@2|Bacteria,1MZID@1224|Proteobacteria,1SEZZ@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Domain of unknown function (DUF374) - - - ko:K09778 - - - - ko00000 - - - DUF374 DYD2_k127_2546233_5 56110.Oscil6304_3588 1.941e-11 66.0 COG4185@1|root,COG4185@2|Bacteria,1G56J@1117|Cyanobacteria,1HBQZ@1150|Oscillatoriales 1117|Cyanobacteria S zeta toxin - - - - - - - - - - - - Zeta_toxin DYD2_k127_2546233_6 56110.Oscil6304_3588 9.078e-09 57.0 COG4185@1|root,COG4185@2|Bacteria,1G56J@1117|Cyanobacteria,1HBQZ@1150|Oscillatoriales 1117|Cyanobacteria S zeta toxin - - - - - - - - - - - - Zeta_toxin DYD2_k127_2546233_0 1120973.AQXL01000120_gene819 1.769e-79 274.0 COG1159@1|root,COG1159@2|Bacteria,1TP3R@1239|Firmicutes,4H9WF@91061|Bacilli,2788K@186823|Alicyclobacillaceae 91061|Bacilli S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism era GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113 - ko:K03595 - - - - ko00000,ko03009,ko03029 - - - KH_2,MMR_HSR1 DYD2_k127_2546233_4 1297742.A176_03510 5.376e-38 154.0 COG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,42NSS@68525|delta/epsilon subdivisions,2WMUT@28221|Deltaproteobacteria,2YVRX@29|Myxococcales 28221|Deltaproteobacteria J Methylates ribosomal protein L11 prmA - - ko:K02687 - - - - ko00000,ko01000,ko03009 - - - PrmA DYD2_k127_2546233_3 1158318.ATXC01000001_gene153 2.095e-40 159.0 COG1385@1|root,COG1385@2|Bacteria,2G44P@200783|Aquificae 200783|Aquificae J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit - GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 ko:K09761 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_RNA DYD2_k127_2546233_7 313612.L8106_02112 1.39e-05 52.0 COG3266@1|root,COG3266@2|Bacteria,1G5GU@1117|Cyanobacteria,1HBIT@1150|Oscillatoriales 1117|Cyanobacteria Q calcium- and calmodulin-responsive adenylate cyclase activity - - - - - - - - - - - - - DYD2_k127_2546233_1 323259.Mhun_0648 5.215e-57 210.0 COG0614@1|root,COG1404@1|root,arCOG00702@2157|Archaea,arCOG03611@2157|Archaea,2XUT1@28890|Euryarchaeota,2NBHB@224756|Methanomicrobia 28890|Euryarchaeota O Subtilase family hly GO:0005575,GO:0005576 - ko:K14645 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - PKD,Peptidase_S8,TAT_signal DYD2_k127_2547694_0 1089553.Tph_c15720 5.647e-111 374.0 COG0128@1|root,COG0128@2|Bacteria,1TPIH@1239|Firmicutes,2488G@186801|Clostridia,42ER2@68295|Thermoanaerobacterales 186801|Clostridia E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate aroA - 2.5.1.19 ko:K00800 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03460 RC00350 ko00000,ko00001,ko00002,ko01000 - - - EPSP_synthase DYD2_k127_2547694_2 1340493.JNIF01000003_gene1559 8.354e-27 116.0 COG0703@1|root,COG0703@2|Bacteria,3Y4R0@57723|Acidobacteria 57723|Acidobacteria E Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate aroK - 2.7.1.71 ko:K00891 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - SKI,TMP-TENI DYD2_k127_2547694_1 1210884.HG799470_gene14547 5.968e-31 123.0 COG0167@1|root,COG0167@2|Bacteria,2J2UX@203682|Planctomycetes 203682|Planctomycetes F dihydroorotate dehydrogenase activity - - - - - - - - - - - - - DYD2_k127_2552981_0 1192034.CAP_8820 8.786e-182 576.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,42MDU@68525|delta/epsilon subdivisions,2WM9V@28221|Deltaproteobacteria,2YUA7@29|Myxococcales 28221|Deltaproteobacteria C Aldehyde dehydrogenase family gabD - 1.2.1.16,1.2.1.20,1.2.1.79 ko:K00135 ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120 M00027 R00713,R00714,R02401 RC00080 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD2_k127_2552981_4 1219077.VAZ01S_048_00240 0.0008195 42.0 COG3208@1|root,COG3208@2|Bacteria,1R0QV@1224|Proteobacteria,1T4NZ@1236|Gammaproteobacteria 1236|Gammaproteobacteria Q Thioesterase involved in non-ribosomal peptide biosynthesis - - - - - - - - - - - - - DYD2_k127_2552981_2 926569.ANT_30290 8.369e-08 57.0 COG0457@1|root,COG0457@2|Bacteria,2G76G@200795|Chloroflexi 200795|Chloroflexi S Domain of unknown function (DUF4037) - - - - - - - - - - - - DUF4037 DYD2_k127_2552981_3 511051.CSE_02610 0.0001471 52.0 COG0265@1|root,COG0265@2|Bacteria 2|Bacteria O serine-type endopeptidase activity - - 3.4.21.107 ko:K04771,ko:K07126 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - Cu_amine_oxidN1,TPR_2,TPR_8,Trypsin_2,YceG_bac DYD2_k127_2552981_1 234267.Acid_7730 4.695e-133 428.0 COG1415@1|root,COG1415@2|Bacteria,3Y6D2@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function (DUF763) - - - ko:K09003 - - - - ko00000 - - - DUF763 DYD2_k127_2558223_0 1379698.RBG1_1C00001G1704 1.18e-13 73.0 COG1595@1|root,COG1595@2|Bacteria,2NPRC@2323|unclassified Bacteria 2|Bacteria K Sigma-70, region 4 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_2560718_0 253839.SSNG_02067 1.65e-56 210.0 28I5G@1|root,2Z88U@2|Bacteria,2IBY7@201174|Actinobacteria 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_2560718_1 63737.Npun_R5915 1.406e-47 184.0 COG2837@1|root,COG2837@2|Bacteria,1G5Q6@1117|Cyanobacteria,1HSP0@1161|Nostocales 1117|Cyanobacteria C TIGRFAM Dyp-type peroxidase family - - - - - - - - - - - - Dyp_perox DYD2_k127_2572022_2 204669.Acid345_0553 1.296e-40 154.0 COG1329@1|root,COG1329@2|Bacteria,3Y4ZG@57723|Acidobacteria,2JMXA@204432|Acidobacteriia 204432|Acidobacteriia K CarD-like/TRCF domain - - - ko:K07736 - - - - ko00000,ko03000 - - - CarD_CdnL_TRCF DYD2_k127_2572022_0 391625.PPSIR1_34013 1.153e-83 298.0 COG1716@1|root,COG2114@1|root,COG2203@1|root,COG1716@2|Bacteria,COG2114@2|Bacteria,COG2203@2|Bacteria,1R45Z@1224|Proteobacteria,43AMH@68525|delta/epsilon subdivisions,2X61H@28221|Deltaproteobacteria,2Z38T@29|Myxococcales 28221|Deltaproteobacteria T Adenylyl- / guanylyl cyclase, catalytic domain - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - FHA,GAF,Guanylate_cyc DYD2_k127_2572022_1 401526.TcarDRAFT_1659 4.126e-72 256.0 COG1077@1|root,COG1077@2|Bacteria,1TP51@1239|Firmicutes,4H1XS@909932|Negativicutes 909932|Negativicutes D Cell shape determining protein, MreB Mrl family mreB - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl DYD2_k127_2572022_3 1121413.JMKT01000009_gene2056 2.499e-19 93.0 COG0517@1|root,COG1994@1|root,COG0517@2|Bacteria,COG1994@2|Bacteria,1MY9R@1224|Proteobacteria,42R1V@68525|delta/epsilon subdivisions,2WN7S@28221|Deltaproteobacteria,2MEHG@213115|Desulfovibrionales 28221|Deltaproteobacteria S Belongs to the peptidase M50B family - - - - - - - - - - - - CBS,Peptidase_M50,Peptidase_M50B DYD2_k127_2572755_1 240015.ACP_2271 4.974e-47 183.0 COG1193@1|root,COG1193@2|Bacteria,3Y2Z2@57723|Acidobacteria,2JHU4@204432|Acidobacteriia 204432|Acidobacteriia L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity mutS2 - - ko:K07456 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_V,Smr DYD2_k127_2572755_0 1122947.FR7_4509 2.475e-101 348.0 COG0358@1|root,COG0358@2|Bacteria,1TQ0X@1239|Firmicutes,4H2CM@909932|Negativicutes 909932|Negativicutes L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication dnaG - - ko:K02316 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB_bind,Toprim_2,Toprim_N,zf-CHC2 DYD2_k127_257384_0 861299.J421_1661 2.383e-92 313.0 COG0534@1|root,COG0534@2|Bacteria,1ZUGI@142182|Gemmatimonadetes 142182|Gemmatimonadetes V MatE - - - - - - - - - - - - MatE DYD2_k127_257384_2 404380.Gbem_3344 5.115e-40 151.0 COG0662@1|root,COG0662@2|Bacteria 2|Bacteria G Cupin 2, conserved barrel domain protein algA - 2.7.7.13,5.3.1.8 ko:K00971,ko:K01809,ko:K16011 ko00051,ko00520,ko01100,ko01110,ko01130,ko02025,map00051,map00520,map01100,map01110,map01130,map02025 M00114,M00361,M00362 R00885,R01819 RC00002,RC00376 ko00000,ko00001,ko00002,ko01000 - - - Cupin_2,FdtA,MannoseP_isomer,NTP_transferase DYD2_k127_257384_3 1896.JOAU01000009_gene6289 1.344e-22 113.0 COG0642@1|root,COG0745@1|root,COG2172@1|root,COG2208@1|root,COG0745@2|Bacteria,COG2172@2|Bacteria,COG2205@2|Bacteria,COG2208@2|Bacteria,2GK8P@201174|Actinobacteria 201174|Actinobacteria T protein phosphatase 2C domain protein - - - - - - - - - - - - GAF,GAF_2,HATPase_c,HATPase_c_2,HisKA,PAS_4,Response_reg,SpoIIE DYD2_k127_257384_1 1297742.A176_00265 9.02e-69 255.0 COG2202@1|root,COG3852@1|root,COG2202@2|Bacteria,COG3852@2|Bacteria,1NWNJ@1224|Proteobacteria 1224|Proteobacteria T PAS domain containing protein - - - ko:K02030 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - ABC_sub_bind,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_8,PAS_9,SBP_bac_3 DYD2_k127_2588235_0 909663.KI867150_gene2166 2.059e-39 154.0 COG1595@1|root,COG1595@2|Bacteria,1MX7T@1224|Proteobacteria,42U04@68525|delta/epsilon subdivisions,2WQA9@28221|Deltaproteobacteria,2MRPA@213462|Syntrophobacterales 28221|Deltaproteobacteria K Sigma-70, region 4 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_2588235_2 868595.Desca_1678 0.0001488 53.0 COG5662@1|root,COG5662@2|Bacteria,1U216@1239|Firmicutes,25N56@186801|Clostridia,2631J@186807|Peptococcaceae 186801|Clostridia K Domain of unknown function (DUF4349) - - - - - - - - - - - - DUF4349,zf-HC2 DYD2_k127_2588235_1 1032480.MLP_25180 1.897e-07 53.0 COG5002@1|root,COG5002@2|Bacteria,2GP6S@201174|Actinobacteria,4DX0G@85009|Propionibacteriales 201174|Actinobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_2594275_2 644966.Tmar_2313 2.169e-25 108.0 COG0566@1|root,COG0566@2|Bacteria,1TP9G@1239|Firmicutes,247SC@186801|Clostridia,3WD6D@538999|Clostridiales incertae sedis 186801|Clostridia J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family yacO - 2.1.1.185 ko:K03218 - - - - ko00000,ko01000,ko03009 - - - SpoU_methylase,SpoU_sub_bind DYD2_k127_2594275_1 237368.SCABRO_03813 1.278e-89 316.0 COG0169@1|root,COG0710@1|root,COG0169@2|Bacteria,COG0710@2|Bacteria,2IXKU@203682|Planctomycetes 203682|Planctomycetes E Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) aroD - 1.1.1.25,4.2.1.10 ko:K13832 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02413,R03084 RC00206,RC00848 ko00000,ko00001,ko00002,ko01000 - - - DHquinase_I,Shikimate_DH,Shikimate_dh_N DYD2_k127_2594275_0 479434.Sthe_0801 4.013e-108 360.0 COG0476@1|root,COG0476@2|Bacteria,2G5Q1@200795|Chloroflexi,27XM2@189775|Thermomicrobia 189775|Thermomicrobia H ThiF family - - 2.7.7.80 ko:K21029 ko04122,map04122 - R07459 RC00043 ko00000,ko00001,ko01000 - - - ThiF DYD2_k127_2598344_0 857087.Metme_2467 3.986e-86 291.0 COG0664@1|root,COG0664@2|Bacteria,1NEQM@1224|Proteobacteria,1RP0B@1236|Gammaproteobacteria,1XDPT@135618|Methylococcales 135618|Methylococcales K SMART HTH transcriptional regulator, Crp - - - - - - - - - - - - HTH_Crp_2 DYD2_k127_2598344_3 56780.SYN_03122 0.0001251 51.0 2E6J8@1|root,3316B@2|Bacteria,1N7GY@1224|Proteobacteria,42V6W@68525|delta/epsilon subdivisions,2WRHG@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_2598344_1 240015.ACP_2973 3.345e-24 106.0 COG1366@1|root,COG1366@2|Bacteria,3Y4U6@57723|Acidobacteria,2JJH2@204432|Acidobacteriia 204432|Acidobacteriia T Belongs to the anti-sigma-factor antagonist family - - - ko:K04749 - - - - ko00000,ko03021 - - - STAS DYD2_k127_2598344_2 1267534.KB906760_gene1554 1.828e-20 94.0 2DD3Z@1|root,2ZGDH@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2611157_5 713586.KB900536_gene1384 8.055e-05 46.0 COG2199@1|root,COG3221@1|root,COG3221@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,1SZ0G@1236|Gammaproteobacteria 1236|Gammaproteobacteria T diguanylate cyclase - - - - - - - - - - - - GGDEF DYD2_k127_2611157_0 401053.AciPR4_0872 4.795e-173 548.0 COG1077@1|root,COG1077@2|Bacteria,3Y3VC@57723|Acidobacteria,2JHQ2@204432|Acidobacteriia 204432|Acidobacteriia D cell shape determining protein MreB - - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl DYD2_k127_2611157_3 933262.AXAM01000010_gene1379 1.079e-27 124.0 COG1792@1|root,COG1792@2|Bacteria,1N8ZS@1224|Proteobacteria,42S9I@68525|delta/epsilon subdivisions,2WNTW@28221|Deltaproteobacteria,2MJMG@213118|Desulfobacterales 28221|Deltaproteobacteria M Involved in formation and maintenance of cell shape mreC - - ko:K03570 - - - - ko00000,ko03036 9.B.157.1 - - MreC DYD2_k127_2611157_1 204669.Acid345_1465 1.267e-113 391.0 COG0768@1|root,COG0768@2|Bacteria,3Y3MX@57723|Acidobacteria,2JHRD@204432|Acidobacteriia 204432|Acidobacteriia M Penicillin-binding protein, dimerisation domain - - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase DYD2_k127_2611157_2 278963.ATWD01000001_gene2127 5.129e-70 250.0 COG0772@1|root,COG0772@2|Bacteria,3Y3DZ@57723|Acidobacteria,2JINX@204432|Acidobacteriia 204432|Acidobacteriia M Peptidoglycan polymerase that is essential for cell wall elongation rodA - - ko:K05837 - - - - ko00000,ko03036 - - - FTSW_RODA_SPOVE DYD2_k127_2611157_4 1340493.JNIF01000003_gene3684 4.809e-22 109.0 COG1530@1|root,COG1530@2|Bacteria,3Y40K@57723|Acidobacteria 57723|Acidobacteria J Ribonuclease, Rne Rng family - - - ko:K08301 - - - - ko00000,ko01000,ko03009,ko03019 - - - RNase_E_G DYD2_k127_2627171_1 221288.JH992901_gene3911 9.513e-261 825.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1JJA2@1189|Stigonemataceae 1117|Cyanobacteria Q AMP-binding enzyme C-terminal domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,TauD,Thioesterase DYD2_k127_2627171_0 1173023.KE650771_gene5334 0.0 1095.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1JI65@1189|Stigonemataceae 1117|Cyanobacteria Q Condensation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,TPR_1,TPR_8,Thioesterase DYD2_k127_2627171_2 909613.UO65_3666 1.119e-05 52.0 2B0K8@1|root,31SXX@2|Bacteria,2GRC0@201174|Actinobacteria,4ED70@85010|Pseudonocardiales 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_2630834_2 1120973.AQXL01000135_gene1319 4.156e-05 46.0 COG1225@1|root,COG1225@2|Bacteria,1V6MU@1239|Firmicutes,4HK8J@91061|Bacilli,27A0F@186823|Alicyclobacillaceae 91061|Bacilli O Redoxin - - - - - - - - - - - - AhpC-TSA DYD2_k127_2630834_1 530564.Psta_2043 1.402e-08 61.0 COG1225@1|root,COG1225@2|Bacteria,2IZQG@203682|Planctomycetes 203682|Planctomycetes O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - 1.11.1.15 ko:K03564 - - - - ko00000,ko01000 - - - AhpC-TSA DYD2_k127_2630834_0 452637.Oter_4049 9.724e-177 569.0 COG0661@1|root,COG0661@2|Bacteria,46UJV@74201|Verrucomicrobia,3K7NS@414999|Opitutae 414999|Opitutae S ABC1 family - - - ko:K03688 - - - - ko00000 - - - ABC1 DYD2_k127_2630991_3 682795.AciX8_4624 1.534e-39 164.0 COG4105@1|root,COG4105@2|Bacteria,3Y36S@57723|Acidobacteria,2JHVA@204432|Acidobacteriia 204432|Acidobacteriia S TIGRFAM Outer membrane assembly lipoprotein YfiO - - - ko:K05807 - - - - ko00000,ko02000 1.B.33.1 - - YfiO DYD2_k127_2630991_1 479434.Sthe_1685 1.118e-75 260.0 COG0036@1|root,COG0036@2|Bacteria,2G6EU@200795|Chloroflexi,27Y7N@189775|Thermomicrobia 189775|Thermomicrobia G Belongs to the ribulose-phosphate 3-epimerase family - - 5.1.3.1 ko:K01783 ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01529 RC00540 ko00000,ko00001,ko00002,ko01000 - - - Ribul_P_3_epim DYD2_k127_2630991_4 568816.Acin_0354 0.0006577 50.0 COG0515@1|root,COG2815@1|root,COG0515@2|Bacteria,COG2815@2|Bacteria,1TP3F@1239|Firmicutes,4H2BH@909932|Negativicutes 909932|Negativicutes KLT serine threonine protein kinase prkC - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PASTA,Pkinase DYD2_k127_2630991_0 1123226.KB899278_gene586 1.85e-84 297.0 COG0144@1|root,COG0781@1|root,COG0144@2|Bacteria,COG0781@2|Bacteria,1TP3N@1239|Firmicutes,4HBQ6@91061|Bacilli,26QFI@186822|Paenibacillaceae 91061|Bacilli J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA sun GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176 ko:K03500 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,Methyltr_RsmF_N,NusB DYD2_k127_2630991_2 768670.Calni_0073 1.039e-69 244.0 COG0223@1|root,COG0223@2|Bacteria,2GF1I@200930|Deferribacteres 200930|Deferribacteres J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus fmt - 2.1.2.9 ko:K00604 ko00670,ko00970,map00670,map00970 - R03940 RC00026,RC00165 ko00000,ko00001,ko01000 - - - Formyl_trans_C,Formyl_trans_N DYD2_k127_2637425_1 269799.Gmet_1782 4.559e-70 241.0 COG0861@1|root,COG0861@2|Bacteria,1MWC9@1224|Proteobacteria,42MZB@68525|delta/epsilon subdivisions,2WKV4@28221|Deltaproteobacteria,43TDE@69541|Desulfuromonadales 28221|Deltaproteobacteria P Integral membrane protein TerC family - - - - - - - - - - - - TerC DYD2_k127_2637425_3 269800.Tfu_0257 1.469e-20 97.0 COG0745@1|root,COG0745@2|Bacteria,2GIZB@201174|Actinobacteria,4EG2J@85012|Streptosporangiales 201174|Actinobacteria T Transcriptional regulatory protein, C terminal - - - ko:K02483 - - - - ko00000,ko02022 - - - Response_reg,Trans_reg_C DYD2_k127_2637425_4 1007104.SUS17_3147 0.0001095 50.0 2DQCB@1|root,335WZ@2|Bacteria,1N06Y@1224|Proteobacteria,2UCE4@28211|Alphaproteobacteria,2KB5X@204457|Sphingomonadales 204457|Sphingomonadales S Family of unknown function (DUF5335) - - - - - - - - - - - - DUF5335 DYD2_k127_2637425_2 522306.CAP2UW1_1169 2.217e-25 111.0 COG1499@1|root,COG1499@2|Bacteria,1RD49@1224|Proteobacteria,2VRQB@28216|Betaproteobacteria 28216|Betaproteobacteria J ribosomal large subunit export from nucleus - - - - - - - - - - - - - DYD2_k127_2637425_0 404589.Anae109_2959 4.135e-72 254.0 COG0845@1|root,COG0845@2|Bacteria,1PZST@1224|Proteobacteria,42R2S@68525|delta/epsilon subdivisions,2WMVJ@28221|Deltaproteobacteria,2Z0BJ@29|Myxococcales 28221|Deltaproteobacteria M TIGRFAM efflux transporter, RND family, MFP subunit - - - ko:K02005 - - - - ko00000 - - - HlyD_3 DYD2_k127_2663894_3 1131269.AQVV01000017_gene1971 3.276e-15 79.0 COG0526@1|root,COG0526@2|Bacteria 2|Bacteria CO cell redox homeostasis resA - - - - - - - - - - - AhpC-TSA,Cytochrom_C DYD2_k127_2663894_1 926569.ANT_28370 1.087e-38 153.0 COG1651@1|root,COG1651@2|Bacteria,2G769@200795|Chloroflexi 200795|Chloroflexi O PFAM DSBA oxidoreductase - - - - - - - - - - - - Thioredoxin_4 DYD2_k127_2663894_5 314230.DSM3645_08652 0.0001228 47.0 COG0450@1|root,COG0515@1|root,COG0450@2|Bacteria,COG0515@2|Bacteria,2IYHQ@203682|Planctomycetes 203682|Planctomycetes KLOT Redoxin - - - - - - - - - - - - AhpC-TSA,Pkinase DYD2_k127_2663894_4 1298880.AUEV01000003_gene3344 2.929e-05 49.0 COG1225@1|root,COG1225@2|Bacteria,2GKME@201174|Actinobacteria 201174|Actinobacteria O alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen ahpE - 1.11.1.15 ko:K03386 ko04214,map04214 - - - ko00000,ko00001,ko01000,ko04147 - - - AhpC-TSA DYD2_k127_2663894_0 1174528.JH992889_gene73 6.388e-41 160.0 COG2020@1|root,COG2020@2|Bacteria,1G383@1117|Cyanobacteria 1117|Cyanobacteria O Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - - - - - - - - - - ICMT DYD2_k127_2663894_2 1304885.AUEY01000018_gene1100 6.366e-25 108.0 COG0682@1|root,COG0682@2|Bacteria,1MVE3@1224|Proteobacteria,42M2I@68525|delta/epsilon subdivisions,2WNPT@28221|Deltaproteobacteria,2MIZH@213118|Desulfobacterales 28221|Deltaproteobacteria M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins lgt - - ko:K13292 - - - - ko00000,ko01000 - - - LGT DYD2_k127_2665003_0 189753.AXAS01000041_gene2534 2.711e-69 248.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_2665003_2 189753.AXAS01000041_gene2534 2.525e-66 243.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_2665003_1 113395.AXAI01000022_gene3533 2.22e-68 241.0 COG2984@1|root,COG2984@2|Bacteria,1R7C2@1224|Proteobacteria,2TZKG@28211|Alphaproteobacteria,3JXR0@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - - - - - - - - - - ABC_sub_bind DYD2_k127_2665003_3 357808.RoseRS_2494 0.0007 43.0 COG0517@1|root,COG1993@1|root,COG0517@2|Bacteria,COG1993@2|Bacteria,2G69Z@200795|Chloroflexi,376P4@32061|Chloroflexia 32061|Chloroflexia T PFAM CBS domain containing protein - - - - - - - - - - - - CBS,DUF190 DYD2_k127_2671795_2 1267535.KB906767_gene1683 5.067e-23 98.0 COG2942@1|root,COG2942@2|Bacteria 2|Bacteria G 2-epimerase - - 5.1.3.11 ko:K16213 - - R01445,R10810 RC00289 ko00000,ko01000 - - - GlcNAc_2-epim,Prenyltrans DYD2_k127_2671795_0 880073.Calab_2261 2.813e-179 582.0 COG1226@1|root,COG4651@1|root,COG1226@2|Bacteria,COG4651@2|Bacteria,2NNZ0@2323|unclassified Bacteria 2|Bacteria P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family kefC - - ko:K03455 - - - - ko00000 2.A.37 - - Na_H_Exchanger,TrkA_C,TrkA_N DYD2_k127_2671795_1 1502852.FG94_00930 1.029e-70 248.0 COG3250@1|root,COG3250@2|Bacteria,1NTQW@1224|Proteobacteria 1224|Proteobacteria G beta-galactosidase activity - - - - - - - - - - - - F5_F8_type_C,Glyco_hydro_2_N DYD2_k127_2686344_2 1121438.JNJA01000001_gene2262 8.576e-05 51.0 COG0466@1|root,COG0466@2|Bacteria,1MUV2@1224|Proteobacteria,42M9W@68525|delta/epsilon subdivisions,2WJ29@28221|Deltaproteobacteria,2M832@213115|Desulfovibrionales 28221|Deltaproteobacteria O ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner lon-3 - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA,LON_substr_bdg,Lon_C DYD2_k127_2686344_1 323261.Noc_1388 1.388e-23 105.0 COG0071@1|root,COG0071@2|Bacteria,1NPJI@1224|Proteobacteria,1SRY5@1236|Gammaproteobacteria,1X21C@135613|Chromatiales 135613|Chromatiales O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD2_k127_2686344_0 378806.STAUR_0399 6.332e-31 130.0 COG0517@1|root,COG0517@2|Bacteria,1N9X9@1224|Proteobacteria,4375S@68525|delta/epsilon subdivisions,2X9SS@28221|Deltaproteobacteria,2YXN7@29|Myxococcales 28221|Deltaproteobacteria S Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS DYD2_k127_2693432_0 756067.MicvaDRAFT_1171 1.459e-131 458.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G135@1117|Cyanobacteria,1H8D7@1150|Oscillatoriales 1117|Cyanobacteria M Tetratricopeptide repeat - - - - - - - - - - - - CHAT,TPR_12,TPR_7 DYD2_k127_2696820_0 1379698.RBG1_1C00001G0607 1.008e-97 359.0 COG0457@1|root,COG0515@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,2NQNE@2323|unclassified Bacteria 2|Bacteria T Serine threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PASTA,Pkinase,TPR_2,TPR_8 DYD2_k127_2696820_1 204669.Acid345_4390 9.564e-55 221.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria,3Y69R@57723|Acidobacteria,2JKIQ@204432|Acidobacteriia 204432|Acidobacteriia KLT Protein kinase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PD40,Pkinase DYD2_k127_2700436_2 1380394.JADL01000024_gene87 9.453e-14 79.0 COG2114@1|root,COG2204@1|root,COG2114@2|Bacteria,COG2204@2|Bacteria,1PYP4@1224|Proteobacteria,2TVEP@28211|Alphaproteobacteria,2JST7@204441|Rhodospirillales 204441|Rhodospirillales T COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_cyc DYD2_k127_2700436_1 1089552.KI911559_gene1104 9.72e-38 150.0 COG4251@1|root,COG4251@2|Bacteria,1NSQ1@1224|Proteobacteria,2TWWT@28211|Alphaproteobacteria 28211|Alphaproteobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_2700436_0 690850.Desaf_1760 7.687e-84 283.0 COG0861@1|root,COG0861@2|Bacteria,1MUNR@1224|Proteobacteria,42PJP@68525|delta/epsilon subdivisions,2WJI0@28221|Deltaproteobacteria,2M7XV@213115|Desulfovibrionales 28221|Deltaproteobacteria P PFAM Integral membrane protein TerC - - - ko:K05794 - - - - ko00000 - - - TerC DYD2_k127_2703774_2 1047013.AQSP01000134_gene1379 1.706e-61 223.0 COG1475@1|root,COG1475@2|Bacteria 2|Bacteria K chromosome segregation parB - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc DYD2_k127_2703774_1 1047013.AQSP01000134_gene1378 6.282e-84 286.0 COG1192@1|root,COG1192@2|Bacteria,2NP2C@2323|unclassified Bacteria 2|Bacteria D Cobyrinic acid ac-diamide synthase parA - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 DYD2_k127_2703774_3 204669.Acid345_1875 1.901e-48 178.0 COG1259@1|root,COG1259@2|Bacteria,3Y4QD@57723|Acidobacteria,2JJ7J@204432|Acidobacteriia 204432|Acidobacteriia S Bifunctional nuclease - - - ko:K08999 - - - - ko00000 - - - DNase-RNase DYD2_k127_2703774_0 1382359.JIAL01000001_gene2143 5.896e-118 394.0 COG0621@1|root,COG0621@2|Bacteria,3Y2GT@57723|Acidobacteria,2JIEP@204432|Acidobacteriia 204432|Acidobacteriia J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB - 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 DYD2_k127_2704152_2 390989.JOEG01000001_gene4799 2.011e-14 75.0 COG2068@1|root,COG2068@2|Bacteria,2HUBA@201174|Actinobacteria,4DDXY@85008|Micromonosporales 201174|Actinobacteria S MobA-like NTP transferase domain - - 2.7.7.76 ko:K07141 ko00790,map00790 - R11582 - ko00000,ko00001,ko01000 - - - NTP_transf_3 DYD2_k127_2704152_0 861299.J421_2163 2.1e-115 379.0 COG0714@1|root,COG0714@2|Bacteria 2|Bacteria KLT Associated with various cellular activities - - - - - - - - - - - - AAA_5 DYD2_k127_2704152_1 1110502.TMO_1172 7.868e-19 95.0 COG3552@1|root,COG3552@2|Bacteria,1MUHH@1224|Proteobacteria,2TSXR@28211|Alphaproteobacteria,2JR83@204441|Rhodospirillales 204441|Rhodospirillales S VWA domain containing CoxE-like protein - - - ko:K07161 - - - - ko00000 - - - VWA_CoxE DYD2_k127_2717880_0 429009.Adeg_1948 5.499e-117 393.0 COG0542@1|root,COG0542@2|Bacteria,1TPMU@1239|Firmicutes,247TD@186801|Clostridia,42FKB@68295|Thermoanaerobacterales 186801|Clostridia O Belongs to the ClpA ClpB family clpC - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N,UVR DYD2_k127_2726979_0 215803.DB30_5516 1.103e-95 320.0 COG0506@1|root,COG0506@2|Bacteria,1R8VR@1224|Proteobacteria,42P21@68525|delta/epsilon subdivisions,2WJU2@28221|Deltaproteobacteria,2YX6B@29|Myxococcales 28221|Deltaproteobacteria C Proline dehydrogenase - - - ko:K00318 ko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130 - R10507 RC00083 ko00000,ko00001,ko01000 - - - Pro_dh DYD2_k127_2726979_1 639282.DEFDS_1810 2.356e-69 242.0 COG2316@1|root,COG2316@2|Bacteria,2GFCZ@200930|Deferribacteres 200930|Deferribacteres S Metal dependent phosphohydrolases with conserved 'HD' motif. - - - - - - - - - - - - HD DYD2_k127_2726979_2 204669.Acid345_3993 1.69e-21 108.0 COG2304@1|root,COG2304@2|Bacteria,3Y44P@57723|Acidobacteria,2JIT1@204432|Acidobacteriia 204432|Acidobacteriia S TIGRFAM VWFA-related Acidobacterial domain - - - - - - - - - - - - VWA,VWA_2 DYD2_k127_2727802_0 1123368.AUIS01000022_gene1052 6.296e-91 306.0 COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,1RPW1@1236|Gammaproteobacteria,2NCI1@225057|Acidithiobacillales 225057|Acidithiobacillales P ABC transporter - - - ko:K06861 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko01000,ko02000 1.B.42.1 - - ABC_tran DYD2_k127_2727802_1 234267.Acid_7397 1.198e-83 294.0 COG1508@1|root,COG1508@2|Bacteria,3Y2M0@57723|Acidobacteria 57723|Acidobacteria K RNA polymerase sigma-54 factor - - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD DYD2_k127_2741235_0 926549.KI421517_gene463 2.305e-244 766.0 COG2234@1|root,COG2234@2|Bacteria,4NFDJ@976|Bacteroidetes,47KZX@768503|Cytophagia 976|Bacteroidetes S PA domain - - - - - - - - - - - - PA,Peptidase_M28 DYD2_k127_2741235_6 511.JT27_11775 9.79e-05 51.0 COG0438@1|root,COG0438@2|Bacteria,1RASW@1224|Proteobacteria,2VWM1@28216|Betaproteobacteria,3T37M@506|Alcaligenaceae 28216|Betaproteobacteria M Glycosyl transferase 4-like domain - - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_2741235_1 1267535.KB906767_gene4972 2.657e-213 680.0 COG1132@1|root,COG1132@2|Bacteria,3Y452@57723|Acidobacteria,2JKH2@204432|Acidobacteriia 57723|Acidobacteria V ABC transporter - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_tran DYD2_k127_2741235_4 521674.Plim_2941 1.6e-92 317.0 COG1520@1|root,COG1520@2|Bacteria,2IYZY@203682|Planctomycetes 203682|Planctomycetes S protein kinase related protein - - - - - - - - - - - - PQQ_2,PQQ_3 DYD2_k127_2741235_3 1123508.JH636440_gene2678 5.282e-123 405.0 COG1454@1|root,COG1454@2|Bacteria,2IXD7@203682|Planctomycetes 203682|Planctomycetes C Iron-containing alcohol dehydrogenase - - 1.1.1.1 ko:K00001,ko:K13954 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - Fe-ADH DYD2_k127_2741235_2 1210884.HG799469_gene14163 2.314e-128 424.0 COG0666@1|root,COG1520@1|root,COG0666@2|Bacteria,COG1520@2|Bacteria,2J2A4@203682|Planctomycetes 203682|Planctomycetes S beta-propeller repeat - - - - - - - - - - - - PQQ_2,PQQ_3 DYD2_k127_2741235_5 314230.DSM3645_12486 1.87e-31 125.0 COG1520@1|root,COG1520@2|Bacteria,2IXCF@203682|Planctomycetes 203682|Planctomycetes S PQQ-like domain - - - - - - - - - - - - PQQ_2,PQQ_3 DYD2_k127_2753444_1 1297865.APJD01000051_gene6889 7.748e-39 153.0 COG3328@1|root,COG3328@2|Bacteria,1MU4P@1224|Proteobacteria,2TUQT@28211|Alphaproteobacteria,3JUYT@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L Transposase, Mutator family - - - ko:K07493 - - - - ko00000 - - - Transposase_mut DYD2_k127_2753444_0 316067.Geob_2601 1.145e-50 190.0 COG1295@1|root,COG1295@2|Bacteria,1MXQA@1224|Proteobacteria,437BB@68525|delta/epsilon subdivisions,2X2G7@28221|Deltaproteobacteria,43V98@69541|Desulfuromonadales 28221|Deltaproteobacteria S Virulence factor BrkB - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB DYD2_k127_2756637_1 1267535.KB906767_gene1426 1.325e-44 168.0 COG1216@1|root,COG1216@2|Bacteria 2|Bacteria V Glycosyl transferase, family 2 - - - ko:K00786 - - - - ko00000,ko01000 - - - Glycos_transf_2 DYD2_k127_2756637_3 1110697.NCAST_34_05400 2.984e-05 52.0 COG1225@1|root,COG1225@2|Bacteria,2GKME@201174|Actinobacteria,4FUKE@85025|Nocardiaceae 201174|Actinobacteria O Redoxin ahpE GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0020012,GO:0030682,GO:0042221,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0051920,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0070887,GO:0075136,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 ko:K03386 ko04214,map04214 - - - ko00000,ko00001,ko01000,ko04147 - - - AhpC-TSA DYD2_k127_2756637_2 1379270.AUXF01000007_gene972 2.056e-18 89.0 COG1225@1|root,COG1225@2|Bacteria 2|Bacteria O peroxiredoxin activity - - 1.11.1.15 ko:K03386,ko:K03564,ko:K16922 ko04214,map04214 - - - ko00000,ko00001,ko01000,ko01002,ko04147 - - - AhpC-TSA,Redoxin DYD2_k127_2756637_0 65093.PCC7418_3088 7.571e-67 237.0 COG1249@1|root,COG1249@2|Bacteria,1G198@1117|Cyanobacteria 1117|Cyanobacteria C Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase - - - - - - - - - - - - Pyr_redox_2,Pyr_redox_dim DYD2_k127_2795899_0 671143.DAMO_3035 3.129e-139 455.0 COG1232@1|root,COG1232@2|Bacteria 2|Bacteria H protoporphyrinogen oxidase activity hemG - 1.14.19.9,1.3.3.15,1.3.3.4 ko:K00231,ko:K14266 ko00404,ko00860,ko01100,ko01110,ko01130,map00404,map00860,map01100,map01110,map01130 M00121,M00789,M00790 R03222,R04178,R09570 RC00885,RC00949 ko00000,ko00001,ko00002,ko01000 - - iSB619.SA_RS09325 Amino_oxidase DYD2_k127_2795899_1 204669.Acid345_0630 1.306e-63 236.0 COG1721@1|root,COG1721@2|Bacteria,3Y5V9@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function DUF58 - - - - - - - - - - - - DUF58 DYD2_k127_281253_1 1217718.ALOU01000009_gene1053 1.591e-25 110.0 COG5588@1|root,COG5588@2|Bacteria,1MWK3@1224|Proteobacteria,2VMAI@28216|Betaproteobacteria,1JZMB@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function (DUF1326) - - - - - - - - - - - - DUF1326 DYD2_k127_281253_0 234267.Acid_0690 8.523e-192 630.0 COG1198@1|root,COG1198@2|Bacteria,3Y2NY@57723|Acidobacteria 57723|Acidobacteria L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA priA - - ko:K04066 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,ResIII DYD2_k127_281253_2 1121405.dsmv_0944 3.354e-18 86.0 COG1573@1|root,COG1573@2|Bacteria,1MWX1@1224|Proteobacteria,42QXV@68525|delta/epsilon subdivisions,2WMXB@28221|Deltaproteobacteria,2MKAZ@213118|Desulfobacterales 28221|Deltaproteobacteria L TIGRFAM phage SPO1 DNA polymerase-related protein - - 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG DYD2_k127_2817523_2 1132855.KB913035_gene1505 6.003e-56 201.0 COG3752@1|root,COG3752@2|Bacteria 2|Bacteria M Protein of unknown function (DUF1295) - - - - - - - - - - - - DUF1295 DYD2_k127_2817523_3 1125863.JAFN01000001_gene2235 4.919e-11 64.0 COG3462@1|root,COG3462@2|Bacteria 2|Bacteria S membrane protein (DUF2078) - - - ko:K08982 - - - - ko00000 - - - SHOCT DYD2_k127_2817523_5 1057002.KB905370_gene3999 3.01e-08 64.0 COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,4B9BA@82115|Rhizobiaceae 28211|Alphaproteobacteria T Adenylate cyclase - - - - - - - - - - - - Guanylate_cyc,TPR_19 DYD2_k127_2817523_1 1210884.HG799464_gene10983 5.812e-70 243.0 COG1611@1|root,COG1611@2|Bacteria 2|Bacteria S cytokinin biosynthetic process - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - YHS DYD2_k127_2817523_0 65093.PCC7418_1447 0.0 1177.0 COG3957@1|root,COG3957@2|Bacteria,1G0B2@1117|Cyanobacteria 1117|Cyanobacteria G D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase - - 4.1.2.22,4.1.2.9 ko:K01621 ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120 - R00761,R01621 RC00032,RC00226 ko00000,ko00001,ko01000 - - - XFP,XFP_C,XFP_N DYD2_k127_2819493_1 768672.Desfe_0626 7.216e-41 157.0 COG1720@1|root,arCOG00761@2157|Archaea,2XQIA@28889|Crenarchaeota 28889|Crenarchaeota S Uncharacterised protein family UPF0066 - - - - - - - - - - - - UPF0066 DYD2_k127_2819493_0 861299.J421_3786 1.617e-127 419.0 COG0282@1|root,COG0282@2|Bacteria,1ZT9P@142182|Gemmatimonadetes 142182|Gemmatimonadetes C Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction ackA - 2.7.2.1 ko:K00925 ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200 M00357,M00579 R00315,R01353 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - Acetate_kinase DYD2_k127_2819493_2 1232410.KI421420_gene3213 3.709e-08 61.0 COG3409@1|root,COG3409@2|Bacteria,1NH2A@1224|Proteobacteria 1224|Proteobacteria M Peptidoglycan-binding domain 1 protein - - - - - - - - - - - - PG_binding_1 DYD2_k127_2819493_3 443144.GM21_0541 7.044e-08 56.0 28T91@1|root,2ZFHN@2|Bacteria,1P659@1224|Proteobacteria,433I9@68525|delta/epsilon subdivisions,2WX6G@28221|Deltaproteobacteria,43VY2@69541|Desulfuromonadales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_2822960_7 1151117.AJLF01000002_gene5 1.52e-43 162.0 COG0346@1|root,arCOG02706@2157|Archaea,2XY0R@28890|Euryarchaeota,24458@183968|Thermococci 183968|Thermococci E Glyoxalase-like domain - GO:0003674,GO:0003824,GO:0004493,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016854,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046491,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 5.1.99.1 ko:K05606 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00373,M00375,M00376,M00741 R02765,R09979 RC00780,RC02739 ko00000,ko00001,ko00002,ko01000 - - - Glyoxalase_4 DYD2_k127_2822960_2 204669.Acid345_2365 1.067e-101 340.0 COG1703@1|root,COG1703@2|Bacteria,3Y40X@57723|Acidobacteria,2JHW8@204432|Acidobacteriia 204432|Acidobacteriia E ArgK protein - - - ko:K07588 - - - - ko00000,ko01000 - - - ArgK DYD2_k127_2822960_0 1382359.JIAL01000001_gene2614 2.908e-164 524.0 COG1960@1|root,COG1960@2|Bacteria,3Y3T6@57723|Acidobacteria,2JIV6@204432|Acidobacteriia 204432|Acidobacteriia I Acyl-CoA dehydrogenase, C-terminal domain - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD2_k127_2822960_4 243231.GSU1403 8.731e-68 239.0 COG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,42NI7@68525|delta/epsilon subdivisions,2WNPX@28221|Deltaproteobacteria,43U1Z@69541|Desulfuromonadales 28221|Deltaproteobacteria J Belongs to the pseudouridine synthase RsuA family rluB - 5.4.99.21,5.4.99.22 ko:K06178,ko:K06182 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 DYD2_k127_2822960_5 234267.Acid_6490 6.084e-53 194.0 COG1386@1|root,COG1386@2|Bacteria,3Y3E0@57723|Acidobacteria 57723|Acidobacteria D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves - - - ko:K06024 - - - - ko00000,ko03036 - - - SMC_ScpB DYD2_k127_2822960_6 1267535.KB906767_gene5273 1.254e-45 175.0 COG1354@1|root,COG1354@2|Bacteria,3Y458@57723|Acidobacteria,2JIGP@204432|Acidobacteriia 204432|Acidobacteriia D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves - - - ko:K05896 - - - - ko00000,ko03036 - - - SMC_ScpA DYD2_k127_2822960_1 642492.Clole_2991 5.751e-117 385.0 COG0180@1|root,COG0180@2|Bacteria,1TPY7@1239|Firmicutes,248RC@186801|Clostridia 186801|Clostridia J Tryptophanyl-tRNA synthetase trpS - 6.1.1.2 ko:K01867 ko00970,map00970 M00359,M00360 R03664 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_1b DYD2_k127_2822960_9 649638.Trad_0754 1.881e-38 153.0 COG1994@1|root,COG1994@2|Bacteria,1WJBS@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S PFAM Peptidase family M50 - - - - - - - - - - - - Peptidase_M50 DYD2_k127_2822960_3 1267535.KB906767_gene1016 3.089e-89 305.0 COG3391@1|root,COG3391@2|Bacteria,3Y99Z@57723|Acidobacteria,2JP6W@204432|Acidobacteriia 204432|Acidobacteriia S amine dehydrogenase activity - - - - - - - - - - - - - DYD2_k127_2822960_8 1278073.MYSTI_01376 6.1e-39 148.0 COG2262@1|root,COG2262@2|Bacteria,1MUA0@1224|Proteobacteria,42NA6@68525|delta/epsilon subdivisions,2WIMU@28221|Deltaproteobacteria,2YU9T@29|Myxococcales 28221|Deltaproteobacteria S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis hflX - - ko:K03665 - - - - ko00000,ko03009 - - - GTP-bdg_M,GTP-bdg_N,MMR_HSR1 DYD2_k127_2823739_1 330214.NIDE2540 1.153e-121 400.0 COG0044@1|root,COG0044@2|Bacteria,3J0D7@40117|Nitrospirae 40117|Nitrospirae F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily pyrC - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 DYD2_k127_2823739_0 338963.Pcar_1615 5.818e-125 409.0 COG0540@1|root,COG0540@2|Bacteria,1MWAB@1224|Proteobacteria,42NMR@68525|delta/epsilon subdivisions,2WJQR@28221|Deltaproteobacteria,43S21@69541|Desulfuromonadales 28221|Deltaproteobacteria F Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain pyrB GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 ko:K00609 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R01397 RC00064,RC02850 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N DYD2_k127_2823739_2 373903.Hore_09350 1.066e-64 227.0 COG2065@1|root,COG2065@2|Bacteria,1V3GV@1239|Firmicutes,24FQD@186801|Clostridia,3WAIW@53433|Halanaerobiales 186801|Clostridia F Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant pyrR - 2.4.2.9 ko:K02825 ko00240,ko01100,map00240,map01100 - R00966 RC00063 ko00000,ko00001,ko01000,ko03000 - - iHN637.CLJU_RS05275 Pribosyltran DYD2_k127_2823739_3 243233.MCA1242 2.035e-19 90.0 COG0167@1|root,COG0167@2|Bacteria,1MU7C@1224|Proteobacteria,1RMCP@1236|Gammaproteobacteria,1XEGZ@135618|Methylococcales 135618|Methylococcales F Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor pyrD - 1.3.5.2 ko:K00254 ko00240,ko01100,map00240,map01100 M00051 R01868 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh DYD2_k127_2831372_1 316067.Geob_2287 8.332e-61 219.0 COG1080@1|root,COG1080@2|Bacteria,1MUT8@1224|Proteobacteria,42P77@68525|delta/epsilon subdivisions,2WK7E@28221|Deltaproteobacteria,43TR7@69541|Desulfuromonadales 28221|Deltaproteobacteria G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) ptsI - 2.7.1.202,2.7.3.9 ko:K02768,ko:K08483,ko:K11183 ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060 M00273 R03232 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.2.1,8.A.7 - - EIIA-man,PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C,PTS-HPr DYD2_k127_2831372_4 663932.KB902575_gene558 5.899e-05 51.0 COG0438@1|root,COG3210@1|root,COG0438@2|Bacteria,COG3210@2|Bacteria,1QWQE@1224|Proteobacteria,2TX1V@28211|Alphaproteobacteria 28211|Alphaproteobacteria U Hint domain - - - - - - - - - - - - Glyco_trans_1_4,Hint_2 DYD2_k127_2831372_3 319225.Plut_0757 5.019e-08 63.0 COG1266@1|root,COG1266@2|Bacteria 2|Bacteria V CAAX protease self-immunity - - - ko:K07052 - - - - ko00000 - - - Abi DYD2_k127_2831372_0 316274.Haur_2328 1.125e-165 533.0 COG2270@1|root,COG2270@2|Bacteria,2G633@200795|Chloroflexi,374W1@32061|Chloroflexia 32061|Chloroflexia S Vacuole effluxer Atg22 like - - - ko:K06902 ko04138,map04138 - - - ko00000,ko00001,ko02000,ko04131 2.A.1.24,9.A.15.1 - - ATG22 DYD2_k127_2831372_2 1408422.JHYF01000009_gene1999 7.847e-45 170.0 COG3635@1|root,COG3635@2|Bacteria,1UIDA@1239|Firmicutes,25EIA@186801|Clostridia 186801|Clostridia G Metalloenzyme superfamily - - - - - - - - - - - - Metalloenzyme DYD2_k127_2833637_1 1144275.COCOR_02863 3.377e-118 411.0 COG3497@1|root,COG3497@2|Bacteria,1NSAQ@1224|Proteobacteria 1224|Proteobacteria S Phage tail sheath protein subtilisin-like domain - - - - - - - - - - - - Phage_sheath_1C DYD2_k127_2833637_2 1123261.AXDW01000010_gene340 7.634e-77 259.0 2BECK@1|root,3283Q@2|Bacteria,1RKSC@1224|Proteobacteria,1T14S@1236|Gammaproteobacteria,1X9RS@135614|Xanthomonadales 135614|Xanthomonadales S T4-like virus tail tube protein gp19 - - - - - - - - - - - - Phage_T4_gp19 DYD2_k127_2833637_0 1429046.RR21198_0290 2.581e-181 588.0 COG3497@1|root,COG3497@2|Bacteria,2GMJA@201174|Actinobacteria,4G5W9@85025|Nocardiaceae 201174|Actinobacteria S Phage tail sheath C-terminal domain - - - ko:K06907 - - - - ko00000 - - - Phage_sheath_1,Phage_sheath_1C DYD2_k127_2833637_5 1144275.COCOR_02866 3.23e-41 166.0 2C8HC@1|root,33V6K@2|Bacteria,1NVBE@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_2833637_4 84531.JMTZ01000038_gene3646 6.278e-51 187.0 2CH4Q@1|root,338ZX@2|Bacteria,1QVRN@1224|Proteobacteria,1T2I4@1236|Gammaproteobacteria,1X9EK@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF4255) - - - - - - - - - - - - DUF4255 DYD2_k127_2833637_7 926550.CLDAP_40710 6.201e-06 51.0 2EU9B@1|root,33MRR@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2833637_3 926550.CLDAP_13010 2.024e-56 208.0 COG3629@1|root,COG3629@2|Bacteria 2|Bacteria K phosphorelay signal transduction system - - - - - - - - - - - - AAA_16,Abhydrolase_1,BTAD,TPR_12,Trans_reg_C DYD2_k127_2833637_6 196490.AUEZ01000004_gene4030 5.365e-11 65.0 COG1032@1|root,COG1032@2|Bacteria,1NG4M@1224|Proteobacteria,2UKY8@28211|Alphaproteobacteria 28211|Alphaproteobacteria C radical SAM domain protein - - - - - - - - - - - - - DYD2_k127_2834237_5 234267.Acid_1075 7.664e-07 57.0 COG5512@1|root,COG5512@2|Bacteria,3Y95D@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function (DUF721) - - - - - - - - - - - - DUF721 DYD2_k127_2834237_4 264732.Moth_2010 2.091e-13 73.0 COG0721@1|root,COG0721@2|Bacteria,1VEK3@1239|Firmicutes,24RIE@186801|Clostridia,42GW8@68295|Thermoanaerobacterales 186801|Clostridia J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) gatC - 6.3.5.6,6.3.5.7 ko:K02435 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - Glu-tRNAGln DYD2_k127_2834237_0 240015.ACP_1864 1.896e-166 536.0 COG0154@1|root,COG0154@2|Bacteria,3Y2PE@57723|Acidobacteria,2JIE0@204432|Acidobacteriia 204432|Acidobacteriia J Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) gatA - 6.3.5.6,6.3.5.7 ko:K02433 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - Amidase DYD2_k127_2834237_2 997346.HMPREF9374_2154 2.993e-103 346.0 COG1840@1|root,COG1840@2|Bacteria,1TQC3@1239|Firmicutes,4HABY@91061|Bacilli,27CM5@186824|Thermoactinomycetaceae 91061|Bacilli P Bacterial extracellular solute-binding protein - - - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - SBP_bac_6 DYD2_k127_2834237_3 928724.SacglDRAFT_02027 2.071e-89 307.0 COG3842@1|root,COG3842@2|Bacteria,2GJCM@201174|Actinobacteria,4E01K@85010|Pseudonocardiales 201174|Actinobacteria E Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system - - 3.6.3.30 ko:K02010,ko:K02052 ko02010,ko02024,map02010,map02024 M00190,M00193 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.10,3.A.1.11 - - ABC_tran,TOBE_2 DYD2_k127_2834237_1 1196028.ALEF01000049_gene351 4.371e-109 371.0 COG1178@1|root,COG1178@2|Bacteria,1TPMX@1239|Firmicutes,4HA2U@91061|Bacilli,4C6W2@84406|Virgibacillus 91061|Bacilli P Binding-protein-dependent transport system inner membrane component - - - ko:K02011 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - BPD_transp_1 DYD2_k127_2835909_0 1499967.BAYZ01000026_gene1631 1.953e-181 586.0 COG0367@1|root,COG0367@2|Bacteria,2NNKE@2323|unclassified Bacteria 2|Bacteria E PFAM asparagine synthase asnB - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_2835909_1 330214.NIDE3016 2.063e-120 391.0 COG1209@1|root,COG1209@2|Bacteria,3J0KX@40117|Nitrospirae 40117|Nitrospirae M Nucleotidyl transferase - - 2.7.7.24 ko:K00973 ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130 M00793 R02328 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase DYD2_k127_2835909_2 1499967.BAYZ01000186_gene3970 5.19e-82 289.0 COG0438@1|root,COG0438@2|Bacteria,2NR2T@2323|unclassified Bacteria 2|Bacteria M Glycosyl transferase 4-like - - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_2843973_0 886293.Sinac_1403 9.444e-33 131.0 COG1146@1|root,COG1146@2|Bacteria,2J013@203682|Planctomycetes 203682|Planctomycetes C Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions - - - ko:K05524 - - - - ko00000 - - - DUF3470,Fer4 DYD2_k127_2843973_1 177439.DP2133 2.285e-15 85.0 COG4399@1|root,COG4399@2|Bacteria,1R42C@1224|Proteobacteria,42SA4@68525|delta/epsilon subdivisions,2WNYH@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Protein of unknown function (DUF445) - - - - - - - - - - - - DUF445 DYD2_k127_285035_0 1267535.KB906767_gene1522 8.985e-141 451.0 COG5285@1|root,COG5285@2|Bacteria 2|Bacteria Q dioxygenase activity - - - - - - - - - - - - PhyH DYD2_k127_285035_1 595460.RRSWK_06077 5.227e-112 366.0 COG5426@1|root,COG5426@2|Bacteria,2J31F@203682|Planctomycetes 203682|Planctomycetes S Putative glutamine amidotransferase - - - - - - - - - - - - GATase1_like DYD2_k127_285035_2 1047013.AQSP01000125_gene2621 2.541e-98 334.0 COG0591@1|root,COG0591@2|Bacteria 2|Bacteria E symporter activity - - - ko:K03307 - - - - ko00000 2.A.21 - - SSF DYD2_k127_2850797_0 401053.AciPR4_3119 3.416e-214 678.0 COG0495@1|root,COG0495@2|Bacteria,3Y37K@57723|Acidobacteria,2JIGF@204432|Acidobacteriia 204432|Acidobacteriia J Belongs to the class-I aminoacyl-tRNA synthetase family leuS - 6.1.1.4 ko:K01869 ko00970,map00970 M00359,M00360 R03657 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Anticodon_1,tRNA-synt_1 DYD2_k127_2850797_1 316274.Haur_0016 4.221e-92 312.0 COG0861@1|root,COG0861@2|Bacteria,2G66P@200795|Chloroflexi,376HN@32061|Chloroflexia 200795|Chloroflexi P PFAM Integral membrane protein TerC - - - ko:K05794 - - - - ko00000 - - - TerC DYD2_k127_2861547_3 1192034.CAP_6755 3.642e-26 111.0 2E4SV@1|root,32ZM7@2|Bacteria,1N8VN@1224|Proteobacteria,42VKR@68525|delta/epsilon subdivisions,2WS4C@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - PGPGW DYD2_k127_2861547_2 529709.PYCH_13880 2.019e-33 136.0 COG1896@1|root,arCOG04311@2157|Archaea,2XX7G@28890|Euryarchaeota,2440T@183968|Thermococci 183968|Thermococci S HD domain - - - ko:K07023 - - - - ko00000 - - - HD_3 DYD2_k127_2861547_4 278963.ATWD01000001_gene1469 3.796e-10 70.0 2EK74@1|root,33DXH@2|Bacteria,3Y5VZ@57723|Acidobacteria,2JK2Y@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_2861547_1 1356852.N008_21595 6.373e-82 283.0 COG1230@1|root,COG1230@2|Bacteria,4NIHB@976|Bacteroidetes,47P51@768503|Cytophagia 976|Bacteroidetes P Cation efflux family czcD - - ko:K16264 - - - - ko00000,ko02000 2.A.4.1 - - Cation_efflux DYD2_k127_2861547_0 1379698.RBG1_1C00001G1614 4.493e-95 325.0 COG0626@1|root,COG0626@2|Bacteria,2NNNS@2323|unclassified Bacteria 2|Bacteria E Cys/Met metabolism PLP-dependent enzyme metB - 2.5.1.48,4.4.1.11,4.4.1.8 ko:K01739,ko:K01760,ko:K01761 ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230 M00017 R00654,R00782,R00999,R01286,R01288,R02408,R02508,R03217,R03260,R04770,R04941,R04944,R04945,R04946 RC00020,RC00056,RC00069,RC00196,RC00348,RC00382,RC00420,RC00488,RC00710,RC01209,RC01210,RC01245,RC02303,RC02848,RC02866 ko00000,ko00001,ko00002,ko01000 - - - Cys_Met_Meta_PP DYD2_k127_2864432_2 1340493.JNIF01000003_gene4032 6.595e-83 290.0 COG0577@1|root,COG0577@2|Bacteria,3Y2MV@57723|Acidobacteria 57723|Acidobacteria V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_2864432_3 1396418.BATQ01000007_gene1447 2.5e-69 250.0 2DR4U@1|root,33A62@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - CreD DYD2_k127_2864432_1 867903.ThesuDRAFT_01903 1.748e-122 403.0 COG0644@1|root,COG0644@2|Bacteria,1TRTQ@1239|Firmicutes,24E1W@186801|Clostridia 186801|Clostridia C FAD binding domain - - - - - - - - - - - - FAD_binding_3,Lycopene_cycl DYD2_k127_2864432_5 1128421.JAGA01000001_gene2145 7.222e-39 150.0 COG1846@1|root,COG1846@2|Bacteria 2|Bacteria K DNA-binding transcription factor activity MA20_05735 - - - - - - - - - - - HTH_34 DYD2_k127_2864432_4 1128421.JAGA01000001_gene2144 6.981e-55 199.0 COG3127@1|root,COG3127@2|Bacteria 2|Bacteria Q FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_2864432_0 1123256.KB907932_gene2946 6.12e-129 424.0 COG0567@1|root,COG0567@2|Bacteria,1MVBF@1224|Proteobacteria,1RN8K@1236|Gammaproteobacteria,1X4NM@135614|Xanthomonadales 135614|Xanthomonadales C E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate sucA - 1.2.4.2 ko:K00164 ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R00621,R01933,R01940,R03316,R08549 RC00004,RC00027,RC00627,RC02743,RC02833,RC02883 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr DYD2_k127_2865962_1 1121920.AUAU01000004_gene685 1.578e-43 163.0 COG1131@1|root,COG1131@2|Bacteria,3Y725@57723|Acidobacteria 57723|Acidobacteria V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_2865962_0 880072.Desac_0362 1.209e-56 213.0 COG1566@1|root,COG1566@2|Bacteria,1QU7Z@1224|Proteobacteria,43BPM@68525|delta/epsilon subdivisions,2X70W@28221|Deltaproteobacteria,2MSKN@213462|Syntrophobacterales 28221|Deltaproteobacteria V HlyD family secretion protein ybhG - - ko:K01993 - - - - ko00000 - - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 DYD2_k127_2865962_2 234267.Acid_0624 9.383e-32 124.0 COG1484@1|root,COG1484@2|Bacteria 2|Bacteria L DNA-dependent DNA replication MA20_45435 - - - - - - - - - - - IstB_IS21 DYD2_k127_2868886_0 264201.pc0479 1.558e-37 145.0 COG1322@1|root,COG1322@2|Bacteria,2JFJ6@204428|Chlamydiae 204428|Chlamydiae S DNA recombination protein RmuC homolog rmuC - - ko:K09760 - - - - ko00000 - - - RmuC DYD2_k127_2868886_1 865861.AZSU01000003_gene2290 7.407e-17 93.0 COG3857@1|root,COG3857@2|Bacteria,1TQJW@1239|Firmicutes,2487T@186801|Clostridia,36EE8@31979|Clostridiaceae 186801|Clostridia L The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation addB - 3.6.4.12 ko:K16899 - - - - ko00000,ko01000,ko03400 - - - Exonuc_V_gamma,PDDEXK_1,UvrD-helicase,UvrD_C DYD2_k127_2870044_4 1379270.AUXF01000006_gene172 6.972e-24 104.0 COG0820@1|root,COG0820@2|Bacteria,1ZTAJ@142182|Gemmatimonadetes 142182|Gemmatimonadetes J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs rlmN - 2.1.1.192 ko:K06941 - - - - ko00000,ko01000,ko03009 - - - Radical_SAM DYD2_k127_2870044_2 1206720.BAFQ01000075_gene2007 1.6e-43 170.0 COG1073@1|root,COG1073@2|Bacteria,2I9HJ@201174|Actinobacteria,4FWIG@85025|Nocardiaceae 201174|Actinobacteria S Serine aminopeptidase, S33 - GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0009605,GO:0009607,GO:0030312,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044464,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0071944,GO:0075136 - ko:K06889 - - - - ko00000 - - - Hydrolase_4 DYD2_k127_2870044_5 794903.OPIT5_29910 8.215e-20 92.0 2E0PR@1|root,32W8G@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2870044_1 234267.Acid_1509 4.662e-148 485.0 COG4219@1|root,COG4219@2|Bacteria,3Y301@57723|Acidobacteria 57723|Acidobacteria KT Peptidase M56 - - - - - - - - - - - - - DYD2_k127_2870044_3 204669.Acid345_2680 3.069e-39 160.0 COG0805@1|root,COG0805@2|Bacteria,3Y3UC@57723|Acidobacteria,2JISU@204432|Acidobacteriia 204432|Acidobacteriia U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes tatC - - ko:K03118 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - TatC DYD2_k127_2870044_6 1121434.AULY01000009_gene1882 4.128e-10 67.0 COG1826@1|root,COG1826@2|Bacteria,1NI3F@1224|Proteobacteria,42VIZ@68525|delta/epsilon subdivisions,2WRC5@28221|Deltaproteobacteria,2MDCV@213115|Desulfovibrionales 28221|Deltaproteobacteria U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes tatB - - ko:K03116,ko:K03117 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 DYD2_k127_2870044_0 1128421.JAGA01000002_gene991 7.099e-176 571.0 COG1793@1|root,COG1793@2|Bacteria,2NPKI@2323|unclassified Bacteria 2|Bacteria L ATP dependent DNA ligase C terminal region lig GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 ko:K10747 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00381,R00382,R10822,R10823 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N DYD2_k127_2870044_7 504728.K649_03590 2.3e-06 60.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria 2|Bacteria S CHAT domain - - - - - - - - - - - - CHAT,Haemagg_act,TPR_10,TPR_12,TPR_7,TPR_8 DYD2_k127_2876615_0 204669.Acid345_0064 7.334e-140 451.0 COG0465@1|root,COG0465@2|Bacteria,3Y2UK@57723|Acidobacteria,2JI9D@204432|Acidobacteriia 204432|Acidobacteriia O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 DYD2_k127_2876615_1 96561.Dole_3045 6.726e-79 273.0 COG0294@1|root,COG0294@2|Bacteria,1MUIR@1224|Proteobacteria,42MMY@68525|delta/epsilon subdivisions,2WIXA@28221|Deltaproteobacteria,2MITP@213118|Desulfobacterales 28221|Deltaproteobacteria H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives folP - 2.5.1.15,2.7.6.3 ko:K00796,ko:K13941 ko00790,ko01100,map00790,map01100 M00126,M00840,M00841 R03066,R03067,R03503 RC00002,RC00017,RC00121,RC00842 ko00000,ko00001,ko00002,ko01000 - - - Pterin_bind DYD2_k127_2876615_3 1340493.JNIF01000003_gene2302 4.714e-18 93.0 COG2980@1|root,COG2980@2|Bacteria,3Y4V4@57723|Acidobacteria 57723|Acidobacteria M Lipopolysaccharide-assembly - - - - - - - - - - - - LptE DYD2_k127_2876615_2 1211814.CAPG01000045_gene2454 2.158e-28 127.0 COG1466@1|root,COG1466@2|Bacteria,1TRM0@1239|Firmicutes,4HBB4@91061|Bacilli,1ZBST@1386|Bacillus 91061|Bacilli L DNA polymerase III delta subunit holA - 2.7.7.7 ko:K02340 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta DYD2_k127_2877625_2 1155718.KB891908_gene1157 4.807e-09 66.0 COG0842@1|root,COG1131@1|root,COG1716@1|root,COG0842@2|Bacteria,COG1131@2|Bacteria,COG1716@2|Bacteria,2GKEU@201174|Actinobacteria 201174|Actinobacteria V ABC transporter - - - ko:K01990,ko:K21397 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane,ABC_tran,FHA,Yop-YscD_cpl DYD2_k127_2877625_0 1192034.CAP_2925 2.642e-66 233.0 COG0500@1|root,COG2226@2|Bacteria,1PEJ8@1224|Proteobacteria,43148@68525|delta/epsilon subdivisions,2WX1D@28221|Deltaproteobacteria,2YV36@29|Myxococcales 28221|Deltaproteobacteria Q Nodulation protein S (NodS) - - - - - - - - - - - - Methyltransf_11 DYD2_k127_2877625_1 1123053.AUDG01000002_gene2818 2.976e-40 159.0 2CD3D@1|root,32RWZ@2|Bacteria,1N61G@1224|Proteobacteria,1SB8Q@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 DYD2_k127_2891280_0 1048834.TC41_0415 3.924e-108 369.0 COG5421@1|root,COG5421@2|Bacteria,1TPAA@1239|Firmicutes,4HDFR@91061|Bacilli 91061|Bacilli L PFAM Transposase - - - - - - - - - - - - DDE_Tnp_1 DYD2_k127_2897076_2 1082933.MEA186_05446 2.778e-05 55.0 COG0500@1|root,COG2226@2|Bacteria,1QYPC@1224|Proteobacteria,2TXUB@28211|Alphaproteobacteria 28211|Alphaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD2_k127_2897076_0 56107.Cylst_4358 2.67e-28 125.0 COG1216@1|root,COG1216@2|Bacteria,1G2ZC@1117|Cyanobacteria,1HJ8R@1161|Nostocales 1117|Cyanobacteria S Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_2897076_3 362242.MUL_4684 0.0001661 52.0 COG0500@1|root,COG2226@2|Bacteria,2IBF2@201174|Actinobacteria,238FY@1762|Mycobacteriaceae 201174|Actinobacteria Q Pfam:Methyltransf_26 - - - - - - - - - - - - Methyltransf_31 DYD2_k127_2897076_1 1173022.Cri9333_0769 1.152e-11 70.0 2EI2V@1|root,33BUA@2|Bacteria,1GEJK@1117|Cyanobacteria,1HG2N@1150|Oscillatoriales 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_2905012_1 1125863.JAFN01000001_gene1869 2.428e-98 335.0 COG0072@1|root,COG0072@2|Bacteria,1MWKS@1224|Proteobacteria,42M1G@68525|delta/epsilon subdivisions,2WJ7V@28221|Deltaproteobacteria 28221|Deltaproteobacteria J Phenylalanyl-tRNA synthetase, beta subunit pheT GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 ko:K01890 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - B3_4,B5,FDX-ACB,tRNA_bind DYD2_k127_2905012_0 445972.ANACOL_03422 8.598e-109 365.0 COG0016@1|root,COG0016@2|Bacteria,1TPFW@1239|Firmicutes,2486E@186801|Clostridia,3WGWV@541000|Ruminococcaceae 186801|Clostridia J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily pheS - 6.1.1.20 ko:K01889 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Phe_tRNA-synt_N,tRNA-synt_2d DYD2_k127_2905012_4 240015.ACP_2248 3.933e-44 164.0 COG0292@1|root,COG0292@2|Bacteria,3Y4SW@57723|Acidobacteria,2JJJ2@204432|Acidobacteriia 204432|Acidobacteriia J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit rplT - - ko:K02887 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L20 DYD2_k127_2905012_5 903818.KI912268_gene2462 3.432e-19 89.0 COG0291@1|root,COG0291@2|Bacteria,3Y5US@57723|Acidobacteria 57723|Acidobacteria J Ribosomal protein L35 - - - ko:K02916 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L35p DYD2_k127_2905012_3 868595.Desca_1052 4.94e-56 203.0 COG0290@1|root,COG0290@2|Bacteria,1V1RC@1239|Firmicutes,24FUS@186801|Clostridia,260V8@186807|Peptococcaceae 186801|Clostridia J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins infC - - ko:K02520 - - - - ko00000,ko03012,ko03029 - - - IF3_C,IF3_N DYD2_k127_2905012_2 1304880.JAGB01000002_gene1531 8.82e-83 279.0 COG0441@1|root,COG0441@2|Bacteria,1TP78@1239|Firmicutes,248CH@186801|Clostridia 186801|Clostridia J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) thrS - 6.1.1.3 ko:K01868 ko00970,map00970 M00359,M00360 R03663 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD DYD2_k127_2906080_2 234267.Acid_4370 3.647e-29 123.0 2DIW1@1|root,32UBV@2|Bacteria,3Y5BC@57723|Acidobacteria 57723|Acidobacteria S Probable zinc-ribbon domain - - - - - - - - - - - - zf-trcl DYD2_k127_2906080_0 1123376.AUIU01000012_gene1434 2.274e-120 401.0 COG0151@1|root,COG0151@2|Bacteria,3J0H5@40117|Nitrospirae 40117|Nitrospirae F Phosphoribosylglycinamide synthetase, C domain purD - 6.3.4.13 ko:K01945 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04144 RC00090,RC00166 ko00000,ko00001,ko00002,ko01000 - - - GARS_A,GARS_C,GARS_N DYD2_k127_2906080_1 378806.STAUR_6365 2.747e-41 161.0 COG1842@1|root,COG1842@2|Bacteria,1NNUD@1224|Proteobacteria,438WP@68525|delta/epsilon subdivisions,2X9RW@28221|Deltaproteobacteria,2YY15@29|Myxococcales 28221|Deltaproteobacteria KT PspA/IM30 family - - - ko:K03969 - - - - ko00000 - - - PspA_IM30 DYD2_k127_2911298_0 1047013.AQSP01000124_gene2676 1.686e-61 235.0 COG4796@1|root,COG4796@2|Bacteria,2NPEQ@2323|unclassified Bacteria 2|Bacteria U Secretin and TonB N terminus short domain pilQ - - ko:K02666 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - AMIN,STN,Secretin,Secretin_N DYD2_k127_2911298_2 1278073.MYSTI_06356 1.057e-14 82.0 COG2018@1|root,COG2018@2|Bacteria,1NG1T@1224|Proteobacteria,42VP4@68525|delta/epsilon subdivisions,2WS9A@28221|Deltaproteobacteria,2YVP4@29|Myxococcales 28221|Deltaproteobacteria S Roadblock/LC7 domain - - - - - - - - - - - - - DYD2_k127_2911298_1 1163617.SCD_n00191 1.577e-48 181.0 COG0744@1|root,COG0744@2|Bacteria,1RDAQ@1224|Proteobacteria,2VHW8@28216|Betaproteobacteria 28216|Betaproteobacteria M Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors mtgA - 2.4.1.129 ko:K03814 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly DYD2_k127_2915054_1 926550.CLDAP_35570 1.188e-62 222.0 COG0664@1|root,COG0664@2|Bacteria,2G6WI@200795|Chloroflexi 200795|Chloroflexi K PFAM Cyclic nucleotide-binding - - - ko:K10914 ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111 - - - ko00000,ko00001,ko03000 - - - HTH_Crp_2,cNMP_binding DYD2_k127_2915054_4 247490.KSU1_B0116 2.924e-07 53.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - - DYD2_k127_2915054_6 247490.KSU1_B0116 0.0007322 46.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - - DYD2_k127_2915054_3 204669.Acid345_2312 4.78e-44 166.0 COG2318@1|root,COG2318@2|Bacteria,3Y594@57723|Acidobacteria,2JJNR@204432|Acidobacteriia 204432|Acidobacteriia S DinB family - - - - - - - - - - - - DinB_2 DYD2_k127_2915054_2 1382359.JIAL01000001_gene658 2.629e-47 174.0 COG1733@1|root,COG1733@2|Bacteria,3Y7XV@57723|Acidobacteria,2JN1Y@204432|Acidobacteriia 204432|Acidobacteriia K HxlR-like helix-turn-helix - - - - - - - - - - - - HxlR DYD2_k127_2915054_0 926550.CLDAP_23700 3.985e-102 341.0 COG0492@1|root,COG0492@2|Bacteria,2G5Z5@200795|Chloroflexi 2|Bacteria C FAD-dependent pyridine nucleotide-disulphide oxidoreductase trxB - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Glutaredoxin,Pyr_redox_2,Pyr_redox_3 DYD2_k127_2915054_5 314230.DSM3645_05929 8.419e-05 48.0 COG0526@1|root,COG0526@2|Bacteria 2|Bacteria CO cell redox homeostasis - - 5.3.4.1 ko:K01829 - - - - ko00000,ko01000 - - - AhpC-TSA,Thioredoxin,Thioredoxin_7 DYD2_k127_2915430_0 324602.Caur_2655 7.504e-110 388.0 COG0842@1|root,COG1131@1|root,COG1716@1|root,COG0842@2|Bacteria,COG1131@2|Bacteria,COG1716@2|Bacteria,2G7J8@200795|Chloroflexi,374RZ@32061|Chloroflexia 32061|Chloroflexia V ABC transporter related - - - - - - - - - - - - ABC2_membrane,ABC_tran,FHA DYD2_k127_2916516_3 913865.DOT_1099 2.405e-17 87.0 COG0251@1|root,COG0251@2|Bacteria,1V6HG@1239|Firmicutes,24J8Y@186801|Clostridia,2627C@186807|Peptococcaceae 186801|Clostridia J PFAM Endoribonuclease L-PSP yjgF - 3.5.99.10 ko:K09022 - - R11098,R11099 RC03275,RC03354 ko00000,ko01000 - - - Ribonuc_L-PSP DYD2_k127_2916516_1 237368.SCABRO_00078 7.014e-36 148.0 COG0664@1|root,COG1716@1|root,COG0664@2|Bacteria,COG1716@2|Bacteria,2J4FD@203682|Planctomycetes 203682|Planctomycetes T Cyclic nucleotide-monophosphate binding domain - - - - - - - - - - - - cNMP_binding DYD2_k127_2916516_2 1280390.CBQR020000139_gene3417 3.559e-24 109.0 COG1335@1|root,COG1335@2|Bacteria,1V371@1239|Firmicutes,4HUPA@91061|Bacilli,26X39@186822|Paenibacillaceae 91061|Bacilli Q Isochorismatase family - - - - - - - - - - - - Isochorismatase DYD2_k127_2916516_4 391623.TERMP_00457 9.764e-05 46.0 COG1656@1|root,COG2442@1|root,arCOG04290@2157|Archaea,arCOG07520@2157|Archaea,2Y1HG@28890|Euryarchaeota,244W7@183968|Thermococci 183968|Thermococci S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_2916516_0 330214.NIDE2608 1.771e-86 291.0 COG1943@1|root,COG1943@2|Bacteria 2|Bacteria L Transposase - - - - - - - - - - - - HTH_23,Y1_Tnp DYD2_k127_2919701_0 1173028.ANKO01000064_gene3082 8.97e-277 887.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H837@1150|Oscillatoriales 1117|Cyanobacteria Q Non-ribosomal peptide synthetase modules and related - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,Formyl_trans_N,Methyltransf_12,PP-binding,PilZ DYD2_k127_2927649_0 1245471.PCA10_13540 1.017e-138 455.0 COG2059@1|root,COG2059@2|Bacteria,1MUBW@1224|Proteobacteria,1RPNP@1236|Gammaproteobacteria,1YDGB@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria P Chromate transporter chrA - - ko:K07240 - - - - ko00000,ko02000 2.A.51.1 - - Chromate_transp DYD2_k127_2927649_1 909663.KI867150_gene2720 5.897e-106 358.0 COG0535@1|root,COG0535@2|Bacteria,1Q6NI@1224|Proteobacteria,433FI@68525|delta/epsilon subdivisions,2WXJT@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Radical SAM superfamily - - - - - - - - - - - - Radical_SAM DYD2_k127_2929346_0 880072.Desac_1818 1.953e-163 543.0 COG3292@1|root,COG3292@2|Bacteria,1QMJ4@1224|Proteobacteria,42RQF@68525|delta/epsilon subdivisions,2WNII@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Two component regulator propeller - - - - - - - - - - - - Tail_P2_I DYD2_k127_2929346_1 338966.Ppro_1811 3.294e-20 93.0 COG4447@1|root,COG4447@2|Bacteria,1NRDC@1224|Proteobacteria,42R9N@68525|delta/epsilon subdivisions,2WN6X@28221|Deltaproteobacteria 28221|Deltaproteobacteria S cellulose binding - - - - - - - - - - - - Beta_helix DYD2_k127_2930609_0 1267534.KB906754_gene3507 1.881e-281 893.0 COG1615@1|root,COG1615@2|Bacteria 2|Bacteria S Uncharacterised protein family (UPF0182) - GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - ko:K09118 - - - - ko00000 - - - UPF0182 DYD2_k127_2930609_2 1047013.AQSP01000139_gene2414 6.932e-41 161.0 COG0457@1|root,COG0457@2|Bacteria,2NRWN@2323|unclassified Bacteria 2|Bacteria S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_2930609_1 404589.Anae109_1214 1.117e-71 250.0 COG0560@1|root,COG0560@2|Bacteria,1RA1A@1224|Proteobacteria,42TQ7@68525|delta/epsilon subdivisions,2WS2Q@28221|Deltaproteobacteria,2Z36A@29|Myxococcales 28221|Deltaproteobacteria E haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD DYD2_k127_2930609_3 366649.XFF4834R_chr05290 1.453e-24 106.0 2DNS7@1|root,32YWC@2|Bacteria,1QU0X@1224|Proteobacteria,1SCKY@1236|Gammaproteobacteria,1X875@135614|Xanthomonadales 135614|Xanthomonadales S 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP DYD2_k127_2930621_1 530564.Psta_3388 1.545e-56 216.0 COG0457@1|root,COG0457@2|Bacteria,2IZTX@203682|Planctomycetes 203682|Planctomycetes S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_2930621_0 1382306.JNIM01000001_gene3484 8.679e-120 403.0 COG0365@1|root,COG0365@2|Bacteria 2|Bacteria I Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA badA - 6.2.1.25,6.2.1.27 ko:K04105,ko:K04110 ko00362,ko00627,ko01100,ko01120,ko01220,map00362,map00627,map01100,map01120,map01220 - R01300,R01422 RC00004,RC00174 ko00000,ko00001,ko01000 - - - AMP-binding,AMP-binding_C DYD2_k127_2939656_5 234267.Acid_6639 4.177e-39 153.0 COG0596@1|root,COG0596@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 DYD2_k127_2939656_3 1267533.KB906733_gene2987 3.296e-62 224.0 COG2208@1|root,COG2208@2|Bacteria 2|Bacteria T phosphoserine phosphatase activity rsbU - 3.1.3.3 ko:K07315,ko:K16928 - M00582 - - ko00000,ko00002,ko01000,ko02000,ko03021 3.A.1.33 - - HAMP,HATPase_c_2,SpoIIE,dCache_1 DYD2_k127_2939656_2 1267534.KB906755_gene4691 4.095e-104 344.0 COG0745@1|root,COG0745@2|Bacteria,3Y4D1@57723|Acidobacteria 57723|Acidobacteria T Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C DYD2_k127_2939656_0 1267533.KB906733_gene2989 1.061e-151 498.0 COG0642@1|root,COG2205@2|Bacteria,3Y2M7@57723|Acidobacteria 57723|Acidobacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_2939656_1 861299.J421_3004 1.249e-144 467.0 COG0334@1|root,COG0334@2|Bacteria,1ZTBQ@142182|Gemmatimonadetes 142182|Gemmatimonadetes C Glutamate/Leucine/Phenylalanine/Valine dehydrogenase - - 1.4.1.9 ko:K00263 ko00280,ko00290,ko01100,ko01110,ko01130,map00280,map00290,map01100,map01110,map01130 - R01088,R01434,R02196 RC00006,RC00036 ko00000,ko00001,ko01000 - - - ELFV_dehydrog,ELFV_dehydrog_N DYD2_k127_2939656_9 266117.Rxyl_2366 8.711e-09 59.0 2BXAG@1|root,32RI7@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2939656_8 1278073.MYSTI_08005 7.748e-20 95.0 COG1846@1|root,COG1846@2|Bacteria 2|Bacteria K DNA-binding transcription factor activity - - - - - - - - - - - - HTH_27,MarR,MarR_2 DYD2_k127_2939656_7 485913.Krac_8724 1.097e-28 121.0 COG2318@1|root,COG2318@2|Bacteria 2|Bacteria S DinB family - - - - - - - - - - - - DinB_2 DYD2_k127_2939656_4 639030.JHVA01000001_gene3266 1.448e-55 213.0 COG4783@1|root,COG4783@2|Bacteria,3Y6B5@57723|Acidobacteria,2JK7Z@204432|Acidobacteriia 204432|Acidobacteriia S Peptidase family M48 - - - - - - - - - - - - Peptidase_M48 DYD2_k127_2939656_6 1117108.PAALTS15_16981 7.099e-33 132.0 COG1694@1|root,COG3956@2|Bacteria,1TPK1@1239|Firmicutes,4HA0A@91061|Bacilli,26QBT@186822|Paenibacillaceae 91061|Bacilli S Protein containing tetrapyrrole methyltransferase domain and MazG-like yabN GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.66 ko:K02428,ko:K02499 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000,ko03036 - - - MazG,TP_methylase DYD2_k127_2940503_1 1499967.BAYZ01000156_gene566 1.791e-69 244.0 COG2091@1|root,COG2091@2|Bacteria,2NQZE@2323|unclassified Bacteria 2|Bacteria H 4'-phosphopantetheinyl transferase superfamily hetI - 2.7.8.7 ko:K00997,ko:K06133 ko00770,map00770 - R01625 RC00002 ko00000,ko00001,ko01000 - - - ACPS DYD2_k127_2940503_0 443143.GM18_3791 8.215e-93 320.0 COG3875@1|root,COG3875@2|Bacteria,1RFFK@1224|Proteobacteria,43B2T@68525|delta/epsilon subdivisions,2X6GN@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Domain of unknown function (DUF2088) larA - - - - - - - - - - - DUF2088 DYD2_k127_2941143_1 926566.Terro_1283 1.461e-68 265.0 COG1629@1|root,COG4771@2|Bacteria,3Y3SU@57723|Acidobacteria 57723|Acidobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_2941143_2 1278073.MYSTI_02345 2.049e-08 64.0 COG2199@1|root,COG4235@1|root,COG3706@2|Bacteria,COG4235@2|Bacteria,1QX6K@1224|Proteobacteria,43BZ6@68525|delta/epsilon subdivisions,2WRS2@28221|Deltaproteobacteria,2YTW4@29|Myxococcales 28221|Deltaproteobacteria T Domain of unknown function (DUF4388) - - - - - - - - - - - - DUF4388,Response_reg,TPR_16,TPR_8 DYD2_k127_2941143_0 880072.Desac_0098 1.376e-179 572.0 COG1208@1|root,COG1208@2|Bacteria,1MUYJ@1224|Proteobacteria,42MX5@68525|delta/epsilon subdivisions,2X5IB@28221|Deltaproteobacteria 28221|Deltaproteobacteria GJM COGs COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) - - 2.7.7.13,5.4.2.8 ko:K16881 ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130 M00114,M00362 R00885,R01818 RC00002,RC00408 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transferase,PGM_PMM_I,PGM_PMM_II DYD2_k127_2954847_0 253839.SSNG_06730 3.922e-119 391.0 COG1404@1|root,COG1404@2|Bacteria,2GK3D@201174|Actinobacteria 201174|Actinobacteria O Belongs to the peptidase S8 family - - - - - - - - - - - - PA,Peptidase_S8 DYD2_k127_2954847_2 1454007.JAUG01000005_gene2790 1.177e-84 293.0 COG2333@1|root,COG2333@2|Bacteria 2|Bacteria N competence protein COMEC - - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - LTD,Lactamase_B DYD2_k127_2954847_1 234267.Acid_7252 7.429e-91 308.0 COG4447@1|root,COG4447@2|Bacteria,3Y69Z@57723|Acidobacteria 57723|Acidobacteria S Sortilin, neurotensin receptor 3, - - - - - - - - - - - - Sortilin-Vps10 DYD2_k127_2961461_4 204669.Acid345_4284 5.046e-32 128.0 COG0577@1|root,COG0577@2|Bacteria,3Y31H@57723|Acidobacteria,2JITF@204432|Acidobacteriia 204432|Acidobacteriia V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_2961461_0 251221.35211765 1.202e-205 666.0 COG0577@1|root,COG0577@2|Bacteria 2|Bacteria V efflux transmembrane transporter activity - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_2961461_5 234267.Acid_1765 7.448e-07 53.0 COG0577@1|root,COG0577@2|Bacteria 234267.Acid_1765|- V efflux transmembrane transporter activity - - - - - - - - - - - - - DYD2_k127_2961461_2 1267535.KB906767_gene630 1.577e-109 357.0 COG1136@1|root,COG1136@2|Bacteria,3Y2X0@57723|Acidobacteria,2JHYU@204432|Acidobacteriia 204432|Acidobacteriia V AAA domain, putative AbiEii toxin, Type IV TA system - - - - - - - - - - - - ABC_tran DYD2_k127_2961461_1 1267535.KB906767_gene632 4.572e-118 384.0 COG1136@1|root,COG1136@2|Bacteria,3Y2J0@57723|Acidobacteria,2JIKD@204432|Acidobacteriia 204432|Acidobacteriia V ABC transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_2961461_3 204669.Acid345_0366 4.097e-46 169.0 COG0845@1|root,COG0845@2|Bacteria,3Y2FV@57723|Acidobacteria,2JHN2@204432|Acidobacteriia 204432|Acidobacteriia M MFP subunit - - - - - - - - - - - - HlyD_3,HlyD_D23 DYD2_k127_2962124_4 1051632.TPY_0530 3.327e-87 302.0 COG3328@1|root,COG3328@2|Bacteria,1TP4C@1239|Firmicutes,248UI@186801|Clostridia 186801|Clostridia L PFAM transposase, mutator - - - ko:K07493 - - - - ko00000 - - - Transposase_mut DYD2_k127_2962124_5 1123320.KB889607_gene9525 1.351e-51 197.0 COG0399@1|root,COG0399@2|Bacteria,2GKD7@201174|Actinobacteria 201174|Actinobacteria E Belongs to the DegT DnrJ EryC1 family eryCIV GO:0005575,GO:0005576,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010106,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0043207,GO:0044403,GO:0044419,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0075136,GO:0098771 2.6.1.33 ko:K13308 ko00523,ko01130,map00523,map01130 M00797 R02773 RC00006,RC00781 ko00000,ko00001,ko00002,ko01000 - - - DegT_DnrJ_EryC1 DYD2_k127_2962124_7 504472.Slin_4364 1.462e-40 161.0 COG1216@1|root,COG1216@2|Bacteria,4NIKM@976|Bacteroidetes,47M8F@768503|Cytophagia 976|Bacteroidetes S Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_2962124_0 1249627.D779_2041 2.318e-121 398.0 COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,1RNJD@1236|Gammaproteobacteria,1WX9A@135613|Chromatiales 135613|Chromatiales GM PFAM NAD-dependent epimerase dehydratase - - 4.1.1.35 ko:K08678 ko00520,ko01100,map00520,map01100 M00361 R01384 RC00508 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd DYD2_k127_2962124_6 1380390.JIAT01000009_gene1683 5.631e-46 174.0 COG2148@1|root,COG2148@2|Bacteria,2GK0M@201174|Actinobacteria,4CQ5U@84995|Rubrobacteria 84995|Rubrobacteria M Bacterial sugar transferase - - - - - - - - - - - - Bac_transf DYD2_k127_2962124_3 118161.KB235919_gene6392 9.078e-94 321.0 COG0438@1|root,COG0438@2|Bacteria,1G271@1117|Cyanobacteria,3VKF8@52604|Pleurocapsales 1117|Cyanobacteria M Glycosyl transferase 4-like domain icsA - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_2962124_1 1541065.JRFE01000051_gene4937 7.719e-112 369.0 COG5285@1|root,COG5285@2|Bacteria,1G2K3@1117|Cyanobacteria,3VIK4@52604|Pleurocapsales 1117|Cyanobacteria Q PFAM Phytanoyl-CoA dioxygenase (PhyH) - - - - - - - - - - - - PhyH DYD2_k127_2962124_2 251229.Chro_1197 1.411e-102 345.0 COG2348@1|root,COG2348@2|Bacteria,1G2EY@1117|Cyanobacteria,3VIX3@52604|Pleurocapsales 1117|Cyanobacteria V Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_6 DYD2_k127_2966111_0 1267535.KB906767_gene597 5.513e-155 502.0 COG0728@1|root,COG0728@2|Bacteria,3Y6N1@57723|Acidobacteria 57723|Acidobacteria S MviN-like protein - - - ko:K03980 - - - - ko00000,ko01011,ko02000 2.A.66.4 - - MVIN DYD2_k127_2966111_1 204669.Acid345_1588 2.451e-77 265.0 COG2204@1|root,COG2204@2|Bacteria,3Y38J@57723|Acidobacteria,2JKV3@204432|Acidobacteriia 204432|Acidobacteriia T Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_2982095_0 661478.OP10G_2288 5.371e-126 418.0 COG2234@1|root,COG2234@2|Bacteria 2|Bacteria DZ aminopeptidase activity - - - - - - - - - - - - FtsX,PA,Peptidase_M28 DYD2_k127_2982576_1 234267.Acid_1127 5.004e-19 89.0 COG1595@1|root,COG1595@2|Bacteria,3Y589@57723|Acidobacteria 57723|Acidobacteria K ECF sigma factor - - - - - - - - - - - - Sigma70_ECF DYD2_k127_2982576_0 1120985.AUMI01000017_gene2672 4.797e-31 131.0 COG3705@1|root,COG3705@2|Bacteria,1TPZZ@1239|Firmicutes,4H1WC@909932|Negativicutes 909932|Negativicutes E Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine hisZ - - ko:K02502 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002 - - - tRNA-synt_His DYD2_k127_2982970_1 391625.PPSIR1_04398 1.606e-30 125.0 COG1607@1|root,COG1607@2|Bacteria,1MZAZ@1224|Proteobacteria,42RJS@68525|delta/epsilon subdivisions,2WQSB@28221|Deltaproteobacteria 28221|Deltaproteobacteria I Thioesterase superfamily yciA - - ko:K10806 ko01040,map01040 - - - ko00000,ko00001,ko01000,ko01004 - - - 4HBT DYD2_k127_2982970_0 1382306.JNIM01000001_gene3896 5.416e-47 178.0 COG2945@1|root,COG2945@2|Bacteria,2G9MQ@200795|Chloroflexi 200795|Chloroflexi S hydrolase of the alpha beta - - - ko:K07018 - - - - ko00000 - - - Hydrolase_4 DYD2_k127_2990275_0 497965.Cyan7822_3499 3.874e-118 391.0 28YQ6@1|root,2ZKHR@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_2990275_1 1385935.N836_12845 1.758e-12 78.0 COG1398@1|root,COG1398@2|Bacteria,1G100@1117|Cyanobacteria,1H7HX@1150|Oscillatoriales 1117|Cyanobacteria I PFAM Fatty acid desaturase ole1 - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase DYD2_k127_299575_7 246197.MXAN_3157 1.962e-05 50.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - - - - - - - - - - - Glyoxalase DYD2_k127_299575_5 1408473.JHXO01000005_gene1606 7.842e-17 80.0 2C19F@1|root,32ZRH@2|Bacteria,4NUG5@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_299575_6 266265.Bxe_B0555 4.537e-14 72.0 2C19F@1|root,32ZRH@2|Bacteria,1NJ8W@1224|Proteobacteria,2WIIC@28216|Betaproteobacteria,1K8DV@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_299575_3 671143.DAMO_0354 1.198e-22 99.0 2DPZI@1|root,3343T@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_299575_1 251229.Chro_0246 8.172e-28 113.0 COG1598@1|root,COG1598@2|Bacteria,1G985@1117|Cyanobacteria,3VKSV@52604|Pleurocapsales 1117|Cyanobacteria S HicB_like antitoxin of bacterial toxin-antitoxin system - - - - - - - - - - - - HicB_lk_antitox DYD2_k127_299575_2 118173.KB235910_gene4730 2.549e-25 105.0 COG1724@1|root,COG1724@2|Bacteria,1G91K@1117|Cyanobacteria 1117|Cyanobacteria N Periplasmic or secreted lipoprotein - - - - - - - - - - - - HicA_toxin DYD2_k127_299575_4 706587.Desti_4031 2.618e-17 90.0 COG1437@1|root,COG1437@2|Bacteria,1RJYE@1224|Proteobacteria,42ZWS@68525|delta/epsilon subdivisions,2WVBV@28221|Deltaproteobacteria 28221|Deltaproteobacteria F CYTH - - - - - - - - - - - - CYTH DYD2_k127_3012600_5 1131269.AQVV01000011_gene2541 2.917e-18 86.0 COG1381@1|root,COG1381@2|Bacteria 2|Bacteria L Involved in DNA repair and RecF pathway recombination recO GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - ko:K03584 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecO_C,RecO_N DYD2_k127_3012600_4 1047013.AQSP01000086_gene2015 1.779e-19 94.0 2B6R1@1|root,31ZPU@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_3012600_0 171693.BN988_01835 4.461e-124 416.0 COG3876@1|root,COG3876@2|Bacteria,1VRMG@1239|Firmicutes,4HA8F@91061|Bacilli,23JJP@182709|Oceanobacillus 91061|Bacilli S Protein of unknown function (DUF1343) ybbC - - - - - - - - - - - DUF1343 DYD2_k127_3012600_1 1191523.MROS_1806 3.485e-65 231.0 COG1028@1|root,COG1028@2|Bacteria 1191523.MROS_1806|- IQ oxidoreductase activity, acting on CH-OH group of donors - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - - DYD2_k127_3012600_2 1219084.AP014508_gene467 1.774e-50 188.0 COG2071@1|root,COG2071@2|Bacteria 2|Bacteria S gamma-glutamyl-gamma-aminobutyrate hydrolase activity - - - ko:K07010 - - - - ko00000,ko01002 - - - Peptidase_C26 DYD2_k127_3012600_3 545695.TREAZ_0896 3.369e-20 91.0 COG5405@1|root,COG5405@2|Bacteria,2J608@203691|Spirochaetes 203691|Spirochaetes O Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery hslV - 3.4.25.2 ko:K01419 - - - - ko00000,ko01000,ko01002 - - - Proteasome DYD2_k127_3015982_1 1198114.AciX9_1644 7.802e-100 343.0 COG4102@1|root,COG4102@2|Bacteria,3Y6D8@57723|Acidobacteria,2JKIU@204432|Acidobacteriia 204432|Acidobacteriia S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD2_k127_3015982_0 1122603.ATVI01000010_gene1065 6.085e-118 407.0 COG5267@1|root,COG5267@2|Bacteria,1MWJK@1224|Proteobacteria,1RR2N@1236|Gammaproteobacteria,1X3V4@135614|Xanthomonadales 135614|Xanthomonadales G Protein of unknown function (DUF1800) - - - - - - - - - - - - DUF1800 DYD2_k127_3024614_0 1242864.D187_003508 3.78e-234 745.0 COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,42M70@68525|delta/epsilon subdivisions,2WJA8@28221|Deltaproteobacteria,2YU3X@29|Myxococcales 28221|Deltaproteobacteria J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD DYD2_k127_3024614_6 234267.Acid_0965 1.367e-10 70.0 COG2137@1|root,COG2137@2|Bacteria,3Y4WT@57723|Acidobacteria 57723|Acidobacteria S Modulates RecA activity recX - - ko:K03565 - - - - ko00000,ko03400 - - - RecX DYD2_k127_3024614_3 1303518.CCALI_02169 1.586e-61 223.0 COG0130@1|root,COG0130@2|Bacteria 2|Bacteria J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs truB GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 ko:K03177 - - - - ko00000,ko01000,ko03016 - - - TruB-C_2,TruB_C,TruB_C_2,TruB_N DYD2_k127_3024614_5 439235.Dalk_1975 1.629e-37 153.0 COG2267@1|root,COG2267@2|Bacteria,1P3EB@1224|Proteobacteria,42UGM@68525|delta/epsilon subdivisions,2WQR2@28221|Deltaproteobacteria,2MPGU@213118|Desulfobacterales 28221|Deltaproteobacteria I PFAM alpha beta hydrolase fold - - - - - - - - - - - - Abhydrolase_1 DYD2_k127_3024614_2 251221.35213956 5.051e-67 237.0 COG4798@1|root,COG4798@2|Bacteria,1GQ94@1117|Cyanobacteria 1117|Cyanobacteria S Methyltransferase type 11 - - - - - - - - - - - - Methyltransf_11,Methyltransf_31 DYD2_k127_3024614_4 234267.Acid_7065 2.941e-59 220.0 28M67@1|root,31CRD@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_3024614_1 378806.STAUR_6239 1.252e-89 302.0 COG0221@1|root,COG0221@2|Bacteria,1RE0M@1224|Proteobacteria,42ZHT@68525|delta/epsilon subdivisions,2WV2A@28221|Deltaproteobacteria,2YVUZ@29|Myxococcales 28221|Deltaproteobacteria C Inorganic pyrophosphatase ppa - 3.6.1.1 ko:K01507 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyrophosphatase DYD2_k127_3024614_7 71139.XP_010029180.1 0.0003718 44.0 COG0265@1|root,KOG1320@2759|Eukaryota,37NI3@33090|Viridiplantae,3G8QG@35493|Streptophyta 35493|Streptophyta O Protease Do-like 1 chloroplastic - GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009987,GO:0010033,GO:0010206,GO:0015979,GO:0016020,GO:0016787,GO:0017171,GO:0019538,GO:0019684,GO:0030091,GO:0030163,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - - - - - - - - - - PDZ_2,Trypsin_2 DYD2_k127_3033271_0 234267.Acid_0498 7.566e-120 388.0 COG0843@1|root,COG0843@2|Bacteria,3Y2X6@57723|Acidobacteria 57723|Acidobacteria C Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B - - 1.9.3.1 ko:K02274 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6 - - COX1 DYD2_k127_3033271_1 1340493.JNIF01000004_gene143 3.708e-71 248.0 COG1845@1|root,COG1845@2|Bacteria,3Y414@57723|Acidobacteria 57723|Acidobacteria C PFAM cytochrome c oxidase, subunit III - - 1.9.3.1 ko:K02276 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.4,3.D.4.6 - - COX3 DYD2_k127_3033271_5 1128421.JAGA01000003_gene2880 1.971e-21 97.0 2ASAK@1|root,31HPU@2|Bacteria,2NQ6K@2323|unclassified Bacteria 2|Bacteria S Prokaryotic Cytochrome C oxidase subunit IV - - 1.9.3.1 ko:K02277 ko00190,ko01100,map00190,map01100 M00155 - - ko00000,ko00001,ko00002,ko01000 3.D.4.4 - - COX4_pro DYD2_k127_3033271_3 1340493.JNIF01000004_gene771 8.939e-30 132.0 COG0633@1|root,COG0633@2|Bacteria 2|Bacteria C Ferredoxin - GO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0046858 1.18.1.3 ko:K00529,ko:K04755,ko:K08952,ko:K08953,ko:K08954,ko:K15765 ko00071,ko00360,ko00623,ko00920,ko01100,ko01120,ko01220,map00071,map00360,map00623,map00920,map01100,map01120,map01220 M00538,M00545 R02000,R02550,R03562,R05666,R06782,R06783,R09513 RC00098,RC00269,RC00490,RC02556 br01602,ko00000,ko00001,ko00002,ko00194,ko01000 - - - FAD_binding_6,Fer2 DYD2_k127_3033271_4 251229.Chro_0246 3.709e-27 111.0 COG1598@1|root,COG1598@2|Bacteria,1G985@1117|Cyanobacteria,3VKSV@52604|Pleurocapsales 1117|Cyanobacteria S HicB_like antitoxin of bacterial toxin-antitoxin system - - - - - - - - - - - - HicB_lk_antitox DYD2_k127_3033271_7 91464.S7335_3851 0.000729 44.0 COG1724@1|root,COG1724@2|Bacteria,1G91K@1117|Cyanobacteria 1117|Cyanobacteria N Periplasmic or secreted lipoprotein - - - - - - - - - - - - HicA_toxin DYD2_k127_3033271_6 111780.Sta7437_1736 1.843e-12 68.0 COG1724@1|root,COG1724@2|Bacteria,1G91K@1117|Cyanobacteria,3VKRB@52604|Pleurocapsales 1117|Cyanobacteria N HicA toxin of bacterial toxin-antitoxin, - - - - - - - - - - - - HicA_toxin DYD2_k127_3033271_2 945713.IALB_1247 6.295e-61 220.0 COG0697@1|root,COG0697@2|Bacteria 2|Bacteria EG spore germination - - - - - - - - - - - - EamA DYD2_k127_3033546_3 1121441.AUCX01000009_gene2470 1.869e-35 139.0 COG0735@1|root,COG0735@2|Bacteria,1RDWJ@1224|Proteobacteria,42MN8@68525|delta/epsilon subdivisions,2X5PR@28221|Deltaproteobacteria,2MBC8@213115|Desulfovibrionales 28221|Deltaproteobacteria K Belongs to the Fur family fur - - ko:K03711 - - - - ko00000,ko03000 - - - FUR DYD2_k127_3033546_6 1244869.H261_12396 4.744e-10 66.0 COG2871@1|root,COG3894@1|root,COG2871@2|Bacteria,COG3894@2|Bacteria,1MV6C@1224|Proteobacteria,2TUJB@28211|Alphaproteobacteria,2JQGJ@204441|Rhodospirillales 204441|Rhodospirillales C Domain of unknown function (DUF4445) - - - - - - - - - - - - DUF4445,Fer2 DYD2_k127_3033546_2 1382359.JIAL01000001_gene1834 5.297e-57 211.0 COG2234@1|root,COG2234@2|Bacteria,3Y406@57723|Acidobacteria,2JIRZ@204432|Acidobacteriia 204432|Acidobacteriia S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 DYD2_k127_3033546_0 1183377.Py04_0852 2.269e-115 381.0 COG0473@1|root,arCOG01163@2157|Archaea,2XT99@28890|Euryarchaeota,242YH@183968|Thermococci 183968|Thermococci C Isocitrate/isopropylmalate dehydrogenase - - 1.1.1.85 ko:K00052 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R00994,R04426,R10052 RC00084,RC00417,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh DYD2_k127_3033546_1 234267.Acid_1567 1.815e-113 380.0 COG1058@1|root,COG1546@1|root,COG1058@2|Bacteria,COG1546@2|Bacteria,3Y466@57723|Acidobacteria 57723|Acidobacteria S Belongs to the CinA family - - 3.5.1.42 ko:K03742 ko00760,map00760 - R02322 RC00100 ko00000,ko00001,ko01000 - - - CinA,MoCF_biosynth DYD2_k127_3033546_4 1172188.KB911820_gene2546 1.473e-30 124.0 COG0346@1|root,COG0346@2|Bacteria,2IPGW@201174|Actinobacteria,4FH0K@85021|Intrasporangiaceae 201174|Actinobacteria E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - 5.1.99.1 ko:K05606 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00373,M00375,M00376,M00741 R02765,R09979 RC00780,RC02739 ko00000,ko00001,ko00002,ko01000 - - - Glyoxalase DYD2_k127_3033546_5 1123008.KB905705_gene911 1.513e-21 96.0 COG2890@1|root,COG2890@2|Bacteria,4PNYZ@976|Bacteroidetes 976|Bacteroidetes J RNA cap guanine-N2 methyltransferase - - - - - - - - - - - - Methyltransf_31 DYD2_k127_3033611_0 314230.DSM3645_22154 1.225e-191 612.0 COG2333@1|root,COG2333@2|Bacteria 2|Bacteria N competence protein COMEC - - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - CW_binding_1,Lactamase_B DYD2_k127_3034585_0 452637.Oter_3899 5.193e-74 259.0 COG0471@1|root,COG3273@1|root,COG0471@2|Bacteria,COG3273@2|Bacteria,46UA9@74201|Verrucomicrobia,3K7MZ@414999|Opitutae 414999|Opitutae P Citrate transporter - - - - - - - - - - - - CitMHS,Na_sulph_symp,TrkA_C DYD2_k127_303656_0 196490.AUEZ01000007_gene5133 1.05e-46 179.0 COG5285@1|root,COG5285@2|Bacteria,1R7DG@1224|Proteobacteria,2TTB2@28211|Alphaproteobacteria 28211|Alphaproteobacteria Q Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - - - - - - - - - - PhyH DYD2_k127_303656_1 240015.ACP_1163 3.281e-45 182.0 COG3306@1|root,COG3306@2|Bacteria 2|Bacteria M glycosyltransferase involved in LPS biosynthesis - - - ko:K07270 - - - - ko00000 - GT25 - Glyco_tranf_2_4,Glyco_transf_25,Glycos_transf_1 DYD2_k127_3044275_0 1283287.KB822575_gene219 9.135e-158 509.0 COG3387@1|root,COG4945@1|root,COG3387@2|Bacteria,COG4945@2|Bacteria,2HCB8@201174|Actinobacteria 201174|Actinobacteria G Glucodextranase, domain N - - 3.2.1.3 ko:K01178 ko00500,ko01100,map00500,map01100 - R01790,R01791,R06199 - ko00000,ko00001,ko01000 - GH15 - CBM_20,Glucodextran_N,Glyco_hydro_15,fn3 DYD2_k127_3044275_2 880072.Desac_1053 8.129e-63 229.0 COG1940@1|root,COG1940@2|Bacteria,1MU94@1224|Proteobacteria,42RF4@68525|delta/epsilon subdivisions,2WPIV@28221|Deltaproteobacteria,2MRQ0@213462|Syntrophobacterales 28221|Deltaproteobacteria G ROK family glkA - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - ROK DYD2_k127_3044275_1 1173022.Cri9333_1490 3.517e-101 346.0 COG1501@1|root,COG1501@2|Bacteria,1G3UD@1117|Cyanobacteria,1HADW@1150|Oscillatoriales 1117|Cyanobacteria G Belongs to the glycosyl hydrolase 31 family - - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - DUF4968,DUF5110,Gal_mutarotas_2,Glyco_hydro_31 DYD2_k127_3058134_2 927677.ALVU02000001_gene2236 1.531e-133 433.0 COG0477@1|root,COG0477@2|Bacteria,1G155@1117|Cyanobacteria 1117|Cyanobacteria EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD2_k127_3058134_3 448385.sce2665 4.437e-84 284.0 COG1335@1|root,COG1335@2|Bacteria,1MZP9@1224|Proteobacteria,42SNF@68525|delta/epsilon subdivisions,2X6IF@28221|Deltaproteobacteria,2Z22A@29|Myxococcales 28221|Deltaproteobacteria Q Isochorismatase family - - - - - - - - - - - - Isochorismatase DYD2_k127_3058134_0 1499967.BAYZ01000095_gene4135 1.399e-163 525.0 COG0006@1|root,COG0006@2|Bacteria 2|Bacteria E proline dipeptidase activity pepQ - 3.4.13.9 ko:K01271 - - - - ko00000,ko01000,ko01002 - - - Creatinase_N,Peptidase_M24 DYD2_k127_3058134_5 118166.JH976538_gene5065 1.799e-23 103.0 COG2202@1|root,COG2203@1|root,COG4585@1|root,COG2202@2|Bacteria,COG2203@2|Bacteria,COG4585@2|Bacteria 2|Bacteria T Histidine kinase - - 2.7.13.3 ko:K07683 ko02020,map02020 M00483 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - GAF_2,HATPase_c,HisKA_3,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_3058134_4 452637.Oter_0829 4.196e-66 233.0 COG2197@1|root,COG2197@2|Bacteria,46UGC@74201|Verrucomicrobia,3K7ZK@414999|Opitutae 74201|Verrucomicrobia K PFAM regulatory protein LuxR - - - - - - - - - - - - GerE,Response_reg DYD2_k127_3058134_1 861299.J421_4340 4.59e-151 489.0 COG0520@1|root,COG0520@2|Bacteria,1ZSV8@142182|Gemmatimonadetes 142182|Gemmatimonadetes E Aminotransferase class-V - - - - - - - - - - - - Aminotran_5 DYD2_k127_3064840_0 448385.sce2470 1.576e-46 188.0 COG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria,42Q67@68525|delta/epsilon subdivisions,2WKZ1@28221|Deltaproteobacteria,2YUQ6@29|Myxococcales 28221|Deltaproteobacteria KLT serine threonine protein kinase - - 2.7.11.1 ko:K08884,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - AAA_16,Pkinase,TPR_12,zinc_ribbon_2 DYD2_k127_3064840_1 234267.Acid_7915 0.0005123 43.0 COG1595@1|root,COG1595@2|Bacteria 2|Bacteria K DNA-templated transcription, initiation - - - ko:K02405 ko02020,ko02025,ko02026,ko02040,ko05111,map02020,map02025,map02026,map02040,map05111 - - - ko00000,ko00001,ko02035,ko03021 - - - Sigma70_ECF DYD2_k127_3065483_1 383372.Rcas_4271 2.271e-33 139.0 COG0438@1|root,COG0438@2|Bacteria,2G61I@200795|Chloroflexi,3753V@32061|Chloroflexia 32061|Chloroflexia M PFAM glycosyl transferase group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_3065483_2 1340493.JNIF01000003_gene3183 1.478e-12 69.0 COG3209@1|root,COG3209@2|Bacteria,3Y7FC@57723|Acidobacteria 57723|Acidobacteria M COG3209 Rhs family protein - - - - - - - - - - - - RHS_repeat DYD2_k127_3065483_0 667014.Thein_1806 1.857e-41 158.0 COG2204@1|root,COG2204@2|Bacteria,2GHIR@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria T Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_306761_0 1047013.AQSP01000138_gene1079 1.397e-75 265.0 COG4974@1|root,COG4974@2|Bacteria,2NNN8@2323|unclassified Bacteria 2|Bacteria L Phage integrase, N-terminal SAM-like domain xerD - - ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase DYD2_k127_306761_1 521674.Plim_1443 8.95e-59 209.0 COG4762@1|root,COG4762@2|Bacteria,2IZUS@203682|Planctomycetes 203682|Planctomycetes S Domain of unknown function (DUF1990) - - - - - - - - - - - - DUF1990 DYD2_k127_306761_2 864069.MicloDRAFT_00003580 3.86e-31 126.0 COG1032@1|root,COG1032@2|Bacteria,1MY2Y@1224|Proteobacteria,2TUIT@28211|Alphaproteobacteria,1JR7K@119045|Methylobacteriaceae 28211|Alphaproteobacteria C SMART Elongator protein 3 MiaB NifB MA20_17485 - - - - - - - - - - - B12-binding,DUF4070,Radical_SAM DYD2_k127_3073990_3 59894.ENSFALP00000001992 8.978e-19 89.0 COG3616@1|root,2QRZ0@2759|Eukaryota,38BQA@33154|Opisthokonta,3BJ6X@33208|Metazoa,3D2Z5@33213|Bilateria,48C44@7711|Chordata,499AY@7742|Vertebrata,4GNAF@8782|Aves 33208|Metazoa E D-serine dehydratase-like - - - - - - - - - - - - Ala_racemase_N,D-ser_dehydrat DYD2_k127_3073990_2 404589.Anae109_0783 1.943e-63 230.0 COG0122@1|root,COG0122@2|Bacteria,1P0FP@1224|Proteobacteria 1224|Proteobacteria L 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase - - 4.2.99.18 ko:K03660 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD DYD2_k127_3073990_1 215803.DB30_8674 1.536e-108 367.0 COG1228@1|root,COG1228@2|Bacteria,1MVAF@1224|Proteobacteria,42MKS@68525|delta/epsilon subdivisions,2WKIH@28221|Deltaproteobacteria,2YUIF@29|Myxococcales 28221|Deltaproteobacteria Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_3073990_0 211165.AJLN01000074_gene6344 7.338e-179 562.0 COG1505@1|root,COG1505@2|Bacteria,1G1B7@1117|Cyanobacteria,1JMTM@1189|Stigonemataceae 1117|Cyanobacteria E Prolyl oligopeptidase, N-terminal beta-propeller domain - - 3.4.21.26 ko:K01322 ko04614,map04614 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N DYD2_k127_3076962_0 1382359.JIAL01000001_gene2069 2.382e-217 683.0 COG0055@1|root,COG0055@2|Bacteria,3Y2PU@57723|Acidobacteria,2JIDM@204432|Acidobacteriia 204432|Acidobacteriia C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits atpD - 3.6.3.14 ko:K02112 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_N DYD2_k127_3076962_4 1340493.JNIF01000003_gene2471 0.0004761 48.0 2EE2F@1|root,337X5@2|Bacteria,3Y5GQ@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_3076962_3 690850.Desaf_1544 3.825e-11 64.0 COG1225@1|root,COG1225@2|Bacteria,1N9JS@1224|Proteobacteria,42R82@68525|delta/epsilon subdivisions,2WMVA@28221|Deltaproteobacteria,2MBM6@213115|Desulfovibrionales 28221|Deltaproteobacteria O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - 1.11.1.15 ko:K03386 ko04214,map04214 - - - ko00000,ko00001,ko01000,ko04147 - - - AhpC-TSA DYD2_k127_3076962_2 1157490.EL26_03370 1.131e-35 138.0 COG1225@1|root,COG1225@2|Bacteria,1V6MU@1239|Firmicutes,4HK8J@91061|Bacilli,27A0F@186823|Alicyclobacillaceae 91061|Bacilli O Redoxin - - - - - - - - - - - - AhpC-TSA DYD2_k127_3076962_1 485913.Krac_9819 9.653e-43 160.0 2DQBG@1|root,335T7@2|Bacteria,2G96K@200795|Chloroflexi 200795|Chloroflexi C Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - - - - - - - - - - GRDB DYD2_k127_307928_3 1313301.AUGC01000003_gene1958 3.512e-22 100.0 COG2062@1|root,COG2062@2|Bacteria,4NQFM@976|Bacteroidetes 976|Bacteroidetes T phosphohistidine phosphatase sixA - - ko:K08296 - - - - ko00000,ko01000 - - - His_Phos_1 DYD2_k127_307928_0 485913.Krac_9228 1.623e-94 317.0 COG0125@1|root,COG0125@2|Bacteria 2|Bacteria F dTDP biosynthetic process tmk GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.1.1.45,2.7.4.9,4.1.1.19 ko:K00560,ko:K00943,ko:K01585 ko00240,ko00330,ko00670,ko01100,ko01523,map00240,map00330,map00670,map01100,map01523 M00053,M00133 R00566,R02094,R02098,R02101 RC00002,RC00219,RC00299,RC00332 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS00680,iJN746.PP_3363,iNJ661.Rv3247c AAA_33,Thymidylate_kin DYD2_k127_307928_2 485913.Krac_9227 1.691e-76 266.0 COG0125@1|root,COG0125@2|Bacteria 2|Bacteria F dTDP biosynthetic process tmk GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.9,4.1.1.19 ko:K00943,ko:K01585 ko00240,ko00330,ko01100,map00240,map00330,map01100 M00053,M00133 R00566,R02094,R02098 RC00002,RC00299 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS00680,iJN746.PP_3363,iNJ661.Rv3247c AAA_33,Thymidylate_kin DYD2_k127_307928_1 1183438.GKIL_4343 8.1e-89 312.0 COG0248@1|root,COG0248@2|Bacteria,1FZZC@1117|Cyanobacteria 1117|Cyanobacteria FP Ppx GppA phosphatase ppx - 3.6.1.11,3.6.1.40 ko:K01524 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000 - - - HD,Ppx-GppA DYD2_k127_307928_4 631362.Thi970DRAFT_00482 0.000222 48.0 COG5607@1|root,COG5607@2|Bacteria,1R5I1@1224|Proteobacteria,1S0QK@1236|Gammaproteobacteria,1WXTK@135613|Chromatiales 135613|Chromatiales S pfam chad - - - - - - - - - - - - CHAD DYD2_k127_3096513_4 344747.PM8797T_30312 1.606e-14 85.0 COG0589@1|root,COG0589@2|Bacteria,2J042@203682|Planctomycetes 203682|Planctomycetes T COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - - - - - - - - - - Usp DYD2_k127_3096513_3 247490.KSU1_C0334 2.636e-20 102.0 COG0589@1|root,COG0589@2|Bacteria,2J042@203682|Planctomycetes 203682|Planctomycetes T COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - - - - - - - - - - Usp DYD2_k127_3096513_0 575540.Isop_3575 2.175e-216 686.0 COG0531@1|root,COG0531@2|Bacteria,2IXT5@203682|Planctomycetes 203682|Planctomycetes E PFAM Amino acid permease - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 DYD2_k127_3096513_1 671143.DAMO_0012 5.361e-209 666.0 COG1966@1|root,COG1966@2|Bacteria,2NNP2@2323|unclassified Bacteria 2|Bacteria T 5TM C-terminal transporter carbon starvation CstA cstA - - ko:K06200 - - - - ko00000 - - - CstA,CstA_5TM DYD2_k127_3096513_2 244582.JQAK01000001_gene759 1.119e-62 218.0 COG0148@1|root,COG0148@2|Bacteria,1MU1N@1224|Proteobacteria,2TR04@28211|Alphaproteobacteria,47EY1@766|Rickettsiales 766|Rickettsiales F Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis eno - 4.2.1.11 ko:K01689 ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066 M00001,M00002,M00003,M00346,M00394 R00658 RC00349 ko00000,ko00001,ko00002,ko01000,ko03019,ko04147 - - - Enolase_C,Enolase_N DYD2_k127_3107563_0 240015.ACP_2217 4.214e-152 493.0 COG0160@1|root,COG0160@2|Bacteria,3Y3P2@57723|Acidobacteria,2JIZJ@204432|Acidobacteriia 204432|Acidobacteriia E Aminotransferase class-III - - 2.6.1.19 ko:K00823 ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120 M00027 R00908,R01648 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 DYD2_k127_3107563_1 861299.J421_2593 7.212e-90 312.0 COG0402@1|root,COG0402@2|Bacteria,1ZSMH@142182|Gemmatimonadetes 142182|Gemmatimonadetes F Amidohydrolase family - - 3.5.4.28,3.5.4.31,3.5.4.40 ko:K12960,ko:K20810 ko00130,ko00270,ko01100,ko01110,map00130,map00270,map01100,map01110 - R09660,R10695 RC00477 ko00000,ko00001,ko01000 - - - Amidohydro_1 DYD2_k127_3107563_3 481448.Minf_0099 6.811e-26 115.0 COG0741@1|root,COG0741@2|Bacteria,46W79@74201|Verrucomicrobia,37GKP@326457|unclassified Verrucomicrobia 74201|Verrucomicrobia M Transglycosylase SLT domain mltE - - ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 - SLT DYD2_k127_3107563_4 388467.A19Y_2179 8.328e-24 106.0 COG1848@1|root,COG1848@2|Bacteria,1G51H@1117|Cyanobacteria,1HAWH@1150|Oscillatoriales 1117|Cyanobacteria S PIN domain - - - - - - - - - - - - PIN DYD2_k127_3107563_5 1183438.GKIL_4114 3.758e-11 76.0 COG3577@1|root,COG3577@2|Bacteria,1G044@1117|Cyanobacteria 1117|Cyanobacteria S gag-polyprotein putative aspartyl protease - - - - - - - - - - - - gag-asp_proteas DYD2_k127_3107563_7 1267535.KB906767_gene3444 1.032e-05 58.0 COG0457@1|root,COG0457@2|Bacteria 1267535.KB906767_gene3444|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_3107563_2 589924.Ferp_1786 2.171e-34 140.0 COG1059@1|root,arCOG04357@2157|Archaea,2XWSZ@28890|Euryarchaeota,24660@183980|Archaeoglobi 183980|Archaeoglobi L Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites) ogg - 4.2.99.18 ko:K03653 - - - - ko00000,ko01000 - - - - DYD2_k127_3107563_6 391625.PPSIR1_01909 1.887e-06 55.0 COG2027@1|root,COG2027@2|Bacteria,1MW40@1224|Proteobacteria,42UDC@68525|delta/epsilon subdivisions,2X5AW@28221|Deltaproteobacteria,2Z34Y@29|Myxococcales 28221|Deltaproteobacteria M D-alanyl-D-alanine carboxypeptidase dacB - 3.4.16.4 ko:K07259 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Peptidase_S13 DYD2_k127_3114178_2 945713.IALB_0156 1.876e-140 457.0 COG4198@1|root,COG4198@2|Bacteria 2|Bacteria - - gdh - 1.4.1.4 ko:K00262 ko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100 - R00248 RC00006,RC02799 ko00000,ko00001,ko01000 - - - DUF1015 DYD2_k127_3114178_0 234267.Acid_3960 1.564e-171 546.0 COG0111@1|root,COG0111@2|Bacteria,3Y7TQ@57723|Acidobacteria 57723|Acidobacteria EH D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding - - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C DYD2_k127_3114178_4 313612.L8106_25715 3.84e-70 246.0 COG0300@1|root,COG0300@2|Bacteria,1G2JD@1117|Cyanobacteria,1H8N9@1150|Oscillatoriales 1117|Cyanobacteria S Belongs to the short-chain dehydrogenases reductases (SDR) family - - - ko:K07124 - - - - ko00000 - - - adh_short DYD2_k127_3114178_1 1191523.MROS_0721 5.273e-143 462.0 COG1932@1|root,COG1932@2|Bacteria 2|Bacteria E Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine serC GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 ko:K00831 ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230 M00020,M00124 R04173,R05085 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_5 DYD2_k127_3114178_3 273068.TTE1538 3.539e-85 292.0 COG0564@1|root,COG0564@2|Bacteria,1TPCM@1239|Firmicutes,247Y2@186801|Clostridia,42F72@68295|Thermoanaerobacterales 186801|Clostridia J Responsible for synthesis of pseudouridine from uracil rluD - 5.4.99.23 ko:K06180 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 DYD2_k127_3114178_5 1379698.RBG1_1C00001G0607 1.154e-59 215.0 COG0457@1|root,COG0515@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,2NQNE@2323|unclassified Bacteria 2|Bacteria T Serine threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PASTA,Pkinase,TPR_2,TPR_8 DYD2_k127_3124852_0 1340493.JNIF01000003_gene2790 6.118e-113 382.0 COG0008@1|root,COG0008@2|Bacteria,3Y465@57723|Acidobacteria 57723|Acidobacteria J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) gltX - 6.1.1.17 ko:K01885 ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120 M00121,M00359,M00360 R05578 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016 - - - tRNA-synt_1c DYD2_k127_3124852_1 322710.Avin_18800 4.848e-05 55.0 COG2304@1|root,COG2304@2|Bacteria,1MXQ7@1224|Proteobacteria,1RMDX@1236|Gammaproteobacteria 1236|Gammaproteobacteria S von willebrand factor, type A batA - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA DYD2_k127_3131346_2 1173022.Cri9333_4294 4.21e-70 252.0 COG1216@1|root,COG1216@2|Bacteria,1G3T8@1117|Cyanobacteria,1HA4H@1150|Oscillatoriales 1117|Cyanobacteria S Uncharacterised nucleotidyltransferase - - - - - - - - - - - - NTP_transf_5 DYD2_k127_3131346_0 1382359.JIAL01000001_gene807 2.008e-284 883.0 COG0481@1|root,COG0481@2|Bacteria,3Y3EX@57723|Acidobacteria,2JI4G@204432|Acidobacteriia 204432|Acidobacteriia M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner lepA - - ko:K03596 ko05134,map05134 - - - ko00000,ko00001 - - - EFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C DYD2_k127_3131346_1 401053.AciPR4_0663 1.834e-132 453.0 COG0744@1|root,COG0744@2|Bacteria,3Y42I@57723|Acidobacteria,2JI7Q@204432|Acidobacteriia 204432|Acidobacteriia M Transglycosylase - - 2.4.1.129,3.4.16.4 ko:K05365 ko00550,map00550 - R04519 RC00005,RC00049 ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly,Transpeptidase DYD2_k127_3131346_3 292459.STH30 2.453e-51 193.0 COG1752@1|root,COG1752@2|Bacteria,1UUVB@1239|Firmicutes,24HQS@186801|Clostridia 186801|Clostridia T esterase of the alpha-beta hydrolase superfamily - - - ko:K07001 - - - - ko00000 - - - Patatin DYD2_k127_3131346_4 1382359.JIAL01000001_gene2311 1.622e-06 59.0 COG0760@1|root,COG0760@2|Bacteria,3Y4KY@57723|Acidobacteria,2JJDJ@204432|Acidobacteriia 204432|Acidobacteriia O Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation - - - - - - - - - - - - SurA_N_3 DYD2_k127_3131808_1 639030.JHVA01000001_gene3740 4.131e-10 65.0 COG1629@1|root,COG4771@2|Bacteria 2|Bacteria P TonB-dependent receptor - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_3131808_0 700598.Niako_6457 4.075e-138 450.0 COG3653@1|root,COG3653@2|Bacteria,4NHDD@976|Bacteroidetes,1IR8Z@117747|Sphingobacteriia 976|Bacteroidetes Q PFAM D-aminoacylase, C-terminal region - - 3.5.1.81 ko:K06015 - - R02192 RC00064,RC00328 ko00000,ko01000 - - - Amidohydro_3 DYD2_k127_3132808_3 246197.MXAN_4778 8.205e-74 263.0 COG5002@1|root,COG5002@2|Bacteria,1MWF3@1224|Proteobacteria,42NB5@68525|delta/epsilon subdivisions,2WJGX@28221|Deltaproteobacteria,2YY2P@29|Myxococcales 28221|Deltaproteobacteria T Histidine kinase phoR - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,PAS,PAS_4,PAS_8,sCache_like DYD2_k127_3132808_4 1203606.HMPREF1526_01642 3.349e-54 198.0 COG0745@1|root,COG0745@2|Bacteria,1TPZ0@1239|Firmicutes,249IC@186801|Clostridia,36EQW@31979|Clostridiaceae 186801|Clostridia KT response regulator srrA1 - - - - - - - - - - - Response_reg,Trans_reg_C DYD2_k127_3132808_5 909663.KI867150_gene253 3.754e-51 189.0 COG0704@1|root,COG0704@2|Bacteria,1MUMI@1224|Proteobacteria,42QWG@68525|delta/epsilon subdivisions,2WMS0@28221|Deltaproteobacteria,2MSIV@213462|Syntrophobacterales 28221|Deltaproteobacteria P PhoU domain phoU - - ko:K02039 - - - - ko00000 - - - PhoU DYD2_k127_3132808_2 983920.Y88_0966 1.586e-103 344.0 COG1117@1|root,COG1117@2|Bacteria,1MU16@1224|Proteobacteria,2TQX9@28211|Alphaproteobacteria,2JZZN@204457|Sphingomonadales 204457|Sphingomonadales P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system pstB - 3.6.3.27 ko:K02036 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.7 - - ABC_tran DYD2_k127_3132808_1 638303.Thal_0204 5.599e-106 351.0 COG1117@1|root,COG1117@2|Bacteria,2G3QZ@200783|Aquificae 200783|Aquificae P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system pstB - 3.6.3.27 ko:K02036 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.7 - - ABC_tran DYD2_k127_3132808_0 243231.GSU1097 1.544e-126 411.0 COG0581@1|root,COG0581@2|Bacteria,1MUWB@1224|Proteobacteria,42MWK@68525|delta/epsilon subdivisions,2WJKH@28221|Deltaproteobacteria,43RYF@69541|Desulfuromonadales 28221|Deltaproteobacteria P Binding-protein-dependent transport system inner membrane component pstA - - ko:K02038 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - BPD_transp_1,DUF3333 DYD2_k127_3132808_6 323848.Nmul_A1086 1.672e-39 147.0 COG0573@1|root,COG0573@2|Bacteria,1MVKP@1224|Proteobacteria,2VH4G@28216|Betaproteobacteria,372NS@32003|Nitrosomonadales 28216|Betaproteobacteria P probably responsible for the translocation of the substrate across the membrane pstC - - ko:K02037 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - BPD_transp_1 DYD2_k127_3141753_1 1047013.AQSP01000055_gene266 1.194e-84 286.0 COG0451@1|root,COG0451@2|Bacteria,2NNNX@2323|unclassified Bacteria 2|Bacteria GM NAD(P)H-binding wbpP - 5.1.3.2,5.1.3.7 ko:K01784,ko:K02473 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R00418,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd DYD2_k127_3141753_0 756067.MicvaDRAFT_2506 6.189e-138 458.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H9T8@1150|Oscillatoriales 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_3146990_3 1121385.AQXW01000004_gene834 5.329e-06 52.0 COG0169@1|root,COG0169@2|Bacteria,2GPQQ@201174|Actinobacteria,1ZW41@145357|Dermacoccaceae 201174|Actinobacteria C This gene contains a nucleotide ambiguity which may be the result of a sequencing error aroE GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 ko:K00014 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02413 RC00206 ko00000,ko00001,ko00002,ko01000 - - iNJ661.Rv2552c Shikimate_DH,Shikimate_dh_N DYD2_k127_3146990_0 68570.DC74_1103 9.527e-158 507.0 COG1960@1|root,COG1960@2|Bacteria 2|Bacteria I acyl-CoA dehydrogenase activity - - - - - - - - - - - - Acyl-CoA_dh_2,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD2_k127_3146990_1 68570.DC74_1098 2.399e-77 280.0 COG0394@1|root,COG0394@2|Bacteria,2H3EW@201174|Actinobacteria 201174|Actinobacteria T Low molecular weight phosphatase family - - - - - - - - - - - - LMWPc DYD2_k127_3146990_2 498211.CJA_0258 1.887e-09 70.0 COG0397@1|root,COG0397@2|Bacteria,1RBB0@1224|Proteobacteria,1S39G@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Uncharacterized ACR, YdiU/UPF0061 family mchC - - - - - - - - - - - UPF0061 DYD2_k127_3147766_9 32057.KB217483_gene10124 1.665e-08 66.0 COG0683@1|root,COG1100@1|root,COG0683@2|Bacteria,COG1100@2|Bacteria,1G4E9@1117|Cyanobacteria 2|Bacteria E Periplasmic binding protein - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6,Pkinase DYD2_k127_3147766_1 1487953.JMKF01000037_gene3227 2.451e-117 421.0 COG1672@1|root,COG2319@1|root,COG1672@2|Bacteria,COG2319@2|Bacteria,1FZVW@1117|Cyanobacteria,1H7FN@1150|Oscillatoriales 1117|Cyanobacteria KLT WD domain, G-beta repeat - - - - - - - - - - - - CHAT,WD40 DYD2_k127_3147766_7 682795.AciX8_0796 1e-39 157.0 28JIP@1|root,2Z82C@2|Bacteria,3Y82Y@57723|Acidobacteria 57723|Acidobacteria S PFAM S1 P1 nuclease - - - - - - - - - - - - S1-P1_nuclease DYD2_k127_3147766_3 404380.Gbem_3461 1.046e-91 314.0 COG0787@1|root,COG0787@2|Bacteria,1MV0Q@1224|Proteobacteria,42MGU@68525|delta/epsilon subdivisions,2WIVG@28221|Deltaproteobacteria,43TGR@69541|Desulfuromonadales 28221|Deltaproteobacteria H Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids alr - 5.1.1.1 ko:K01775 ko00473,ko01100,ko01502,map00473,map01100,map01502 - R00401 RC00285 ko00000,ko00001,ko01000,ko01011 - - - Ala_racemase_C,Ala_racemase_N DYD2_k127_3147766_8 401053.AciPR4_2460 6.805e-16 82.0 COG4319@1|root,COG4319@2|Bacteria,3Y5FP@57723|Acidobacteria,2JN7M@204432|Acidobacteriia 204432|Acidobacteriia S SnoaL-like domain - - - - - - - - - - - - DUF4440 DYD2_k127_3147766_0 234267.Acid_5235 1.042e-147 481.0 COG0402@1|root,COG0402@2|Bacteria,3Y64N@57723|Acidobacteria 57723|Acidobacteria F Amidohydrolase family - - 3.5.4.28,3.5.4.31 ko:K12960 ko00270,ko01100,map00270,map01100 - R09660 RC00477 ko00000,ko00001,ko01000 - - - Amidohydro_1 DYD2_k127_3147766_6 234267.Acid_5234 1.108e-43 163.0 COG0295@1|root,COG0295@2|Bacteria,3Y5GE@57723|Acidobacteria 57723|Acidobacteria F Cytidine and deoxycytidylate deaminase zinc-binding region - - 3.5.4.5 ko:K01489 ko00240,ko00983,ko01100,map00240,map00983,map01100 - R01878,R02485,R08221 RC00074,RC00514 ko00000,ko00001,ko01000 - - - dCMP_cyt_deam_1 DYD2_k127_3147766_5 867845.KI911784_gene967 1.942e-73 252.0 COG0572@1|root,COG0572@2|Bacteria,2G6D5@200795|Chloroflexi,376PV@32061|Chloroflexia 32061|Chloroflexia F PFAM phosphoribulokinase uridine kinase udk GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.48 ko:K00876 ko00240,ko00983,ko01100,map00240,map00983,map01100 - R00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PRK DYD2_k127_3147766_2 1430331.EP10_18360 1.089e-99 333.0 COG0005@1|root,COG0005@2|Bacteria,1TQ37@1239|Firmicutes,4HABP@91061|Bacilli,1WE42@129337|Geobacillus 91061|Bacilli F The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate punA - 2.4.2.1,2.4.2.28 ko:K00772,ko:K03783 ko00230,ko00240,ko00270,ko00760,ko01100,ko01110,map00230,map00240,map00270,map00760,map01100,map01110 M00034 R01402,R01561,R01863,R01969,R02147,R02294,R02295,R02297,R02484,R02557,R02748,R08368,R10244 RC00033,RC00063,RC00122,RC02819 ko00000,ko00001,ko00002,ko01000 - - - PNP_UDP_1 DYD2_k127_3147766_4 1121033.AUCF01000018_gene5855 1.242e-85 292.0 COG1079@1|root,COG1079@2|Bacteria,1MVDQ@1224|Proteobacteria,2TSTD@28211|Alphaproteobacteria,2JPWK@204441|Rhodospirillales 204441|Rhodospirillales S Belongs to the binding-protein-dependent transport system permease family - - - ko:K02057 - M00221 - - ko00000,ko00002,ko02000 3.A.1.2 - - BPD_transp_2 DYD2_k127_3147766_10 644966.Tmar_1317 0.000213 46.0 COG4603@1|root,COG4603@2|Bacteria,1TP1F@1239|Firmicutes,2494C@186801|Clostridia,3WDIB@538999|Clostridiales incertae sedis 186801|Clostridia S PFAM Branched-chain amino acid transport system permease component - - - ko:K02057 - M00221 - - ko00000,ko00002,ko02000 3.A.1.2 - - BPD_transp_2 DYD2_k127_3147929_0 240292.Ava_C0009 0.0 1662.0 COG0318@1|root,COG1020@1|root,COG0318@2|Bacteria,COG1020@2|Bacteria,1G1WS@1117|Cyanobacteria,1HMY3@1161|Nostocales 1117|Cyanobacteria IQ TIGRFAM amino acid adenylation domain mcyC - - ko:K16132 ko01054,map01054 - - - ko00000,ko00001,ko01008 - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_3147929_1 98439.AJLL01000095_gene4183 3.203e-171 545.0 COG3321@1|root,COG3321@2|Bacteria,1FZXE@1117|Cyanobacteria,1JJJW@1189|Stigonemataceae 1117|Cyanobacteria Q Ketoacyl-synthetase C-terminal extension - - - - - - - - - - - - Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,ketoacyl-synt DYD2_k127_3148080_3 1265505.ATUG01000002_gene2047 0.000499 50.0 COG3167@1|root,COG3167@2|Bacteria,1RBGW@1224|Proteobacteria,42S1V@68525|delta/epsilon subdivisions,2WNDR@28221|Deltaproteobacteria,2MJVB@213118|Desulfobacterales 28221|Deltaproteobacteria NU PFAM Pilus assembly protein PilO pilO - - ko:K02664 - - - - ko00000,ko02035,ko02044 - - - PilO DYD2_k127_3148080_2 1125863.JAFN01000001_gene2286 7.083e-05 53.0 COG3166@1|root,COG3166@2|Bacteria,1Q1I0@1224|Proteobacteria,42W65@68525|delta/epsilon subdivisions,2WS79@28221|Deltaproteobacteria 28221|Deltaproteobacteria NU PFAM Fimbrial assembly family protein pilN - - ko:K02663 - - - - ko00000,ko02035,ko02044 - - - PilN DYD2_k127_3148080_0 204669.Acid345_1469 1.683e-95 323.0 COG4972@1|root,COG4972@2|Bacteria,3Y804@57723|Acidobacteria 57723|Acidobacteria NU Type IV pilus assembly protein PilM; - - - ko:K02662 - - - - ko00000,ko02035,ko02044 - - - PilM_2 DYD2_k127_3148080_1 682795.AciX8_2533 6.673e-78 268.0 COG0110@1|root,COG0110@2|Bacteria,3Y5D1@57723|Acidobacteria,2JJP0@204432|Acidobacteriia 204432|Acidobacteriia S maltose O-acetyltransferase activity - - - - - - - - - - - - - DYD2_k127_3148533_2 290397.Adeh_0307 4.552e-05 50.0 COG3342@1|root,COG3342@2|Bacteria,1MWQT@1224|Proteobacteria 1224|Proteobacteria S major pilin protein fima MA20_16755 - - - - - - - - - - - DUF1028 DYD2_k127_3148533_0 1382359.JIAL01000001_gene1385 2.728e-99 335.0 COG0391@1|root,COG0391@2|Bacteria,3Y3ZE@57723|Acidobacteria,2JITK@204432|Acidobacteriia 204432|Acidobacteriia S Required for morphogenesis under gluconeogenic growth conditions - - - - - - - - - - - - UPF0052 DYD2_k127_3148533_1 471223.GWCH70_0045 3.021e-87 300.0 COG1207@1|root,COG1207@2|Bacteria,1TP88@1239|Firmicutes,4H9V5@91061|Bacilli,1WEW7@129337|Geobacillus 91061|Bacilli M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain glmU GO:0000270,GO:0000271,GO:0003674,GO:0003824,GO:0003977,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0030203,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509 2.3.1.157,2.7.7.23 ko:K04042 ko00520,ko01100,ko01130,map00520,map01100,map01130 M00362 R00416,R05332 RC00002,RC00004,RC00166 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transf_3,NTP_transferase DYD2_k127_3158505_1 1267533.KB906735_gene4526 2.79e-69 245.0 COG1295@1|root,COG1295@2|Bacteria,3Y3RZ@57723|Acidobacteria,2JIYV@204432|Acidobacteriia 204432|Acidobacteriia S Virulence factor BrkB - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB DYD2_k127_3158505_2 234267.Acid_0084 1.971e-54 203.0 2EZNS@1|root,33STS@2|Bacteria,3Y75C@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_3158505_0 1267535.KB906767_gene3318 1.351e-123 407.0 COG0665@1|root,COG0665@2|Bacteria,3Y6FK@57723|Acidobacteria,2JKN4@204432|Acidobacteriia 204432|Acidobacteriia E FAD dependent oxidoreductase - - - - - - - - - - - - DAO DYD2_k127_3158505_3 926566.Terro_2880 4.067e-12 77.0 COG2885@1|root,COG3637@1|root,COG2885@2|Bacteria,COG3637@2|Bacteria,3Y8DM@57723|Acidobacteria 57723|Acidobacteria M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - - DYD2_k127_3158505_4 1173022.Cri9333_0163 7.139e-08 61.0 COG0457@1|root,COG0457@2|Bacteria,1G20P@1117|Cyanobacteria,1H8AZ@1150|Oscillatoriales 1117|Cyanobacteria L Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_2,TPR_8 DYD2_k127_3161688_5 28229.ND2E_1485 0.000294 53.0 COG2911@1|root,COG3420@1|root,COG3533@1|root,COG2911@2|Bacteria,COG3420@2|Bacteria,COG3533@2|Bacteria,1NGRY@1224|Proteobacteria,1T22S@1236|Gammaproteobacteria,2Q81Z@267889|Colwelliaceae 1236|Gammaproteobacteria P Pentaxin family - - - ko:K12287 - - - - ko00000,ko02044 - - - CUB,Laminin_G_3 DYD2_k127_3161688_0 1340493.JNIF01000003_gene3380 6.698e-35 148.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis tccC1 - - ko:K11021 - - - - ko00000,ko02042 - - - - DYD2_k127_3161688_1 1340493.JNIF01000003_gene3380 1.599e-33 147.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis tccC1 - - ko:K11021 - - - - ko00000,ko02042 - - - - DYD2_k127_3161688_4 756272.Plabr_0748 1.71e-11 71.0 28VZD@1|root,2ZI0J@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - SMI1_KNR4 DYD2_k127_3161688_2 1340493.JNIF01000003_gene1586 2.308e-17 87.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis tccC1 - - ko:K11021 - - - - ko00000,ko02042 - - - - DYD2_k127_3163675_0 868595.Desca_0609 4.461e-87 294.0 COG0689@1|root,COG0689@2|Bacteria,1TQM3@1239|Firmicutes,25E5P@186801|Clostridia,26123@186807|Peptococcaceae 186801|Clostridia J Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates rph - 2.7.7.56,3.6.1.66 ko:K00989,ko:K02428 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000,ko03016 - - - Ham1p_like,RNase_PH,RNase_PH_C DYD2_k127_3163675_1 1267535.KB906767_gene4113 1.03e-32 131.0 COG2940@1|root,COG2940@2|Bacteria,3Y7R1@57723|Acidobacteria 57723|Acidobacteria S SET domain - - - ko:K07117 - - - - ko00000 - - - SET DYD2_k127_3163675_2 517418.Ctha_1531 1.759e-28 120.0 COG5002@1|root,COG5002@2|Bacteria,1FF7Q@1090|Chlorobi 1090|Chlorobi T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_3163849_4 234267.Acid_5500 4.201e-31 130.0 COG0652@1|root,COG0652@2|Bacteria 2|Bacteria O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides ppiB - 5.2.1.8 ko:K01802,ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - HemolysinCabind,Pro_isomerase DYD2_k127_3163849_5 5722.XP_001295165.1 1.041e-23 111.0 COG0666@1|root,KOG0504@2759|Eukaryota 2759|Eukaryota I protein ubiquitination - - 2.3.1.225 ko:K15502,ko:K15503,ko:K20032,ko:K21440 - - - - ko00000,ko01000,ko01009,ko03400,ko04131 9.B.37.1,9.B.37.3 - - Ank,Ank_2,Ank_3,Ank_4,Ank_5,DUF3447 DYD2_k127_3163849_1 240015.ACP_2879 7.481e-78 264.0 COG0512@1|root,COG0512@2|Bacteria,3Y36D@57723|Acidobacteria,2JHQS@204432|Acidobacteriia 204432|Acidobacteriia EH Peptidase C26 - - 4.1.3.27 ko:K01658 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - GATase DYD2_k127_3163849_0 562970.Btus_1721 7.549e-94 319.0 COG0547@1|root,COG0547@2|Bacteria,1TP8U@1239|Firmicutes,4H9KQ@91061|Bacilli,2781D@186823|Alicyclobacillaceae 91061|Bacilli E Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) trpD GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0004425,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 ko:K00766,ko:K13497 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R00985,R00986,R01073 RC00010,RC00440,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 DYD2_k127_3163849_2 1397527.Q670_11420 6.933e-60 216.0 COG0134@1|root,COG0134@2|Bacteria,1MW5K@1224|Proteobacteria,1RNYH@1236|Gammaproteobacteria,1XIIP@135619|Oceanospirillales 135619|Oceanospirillales E Belongs to the TrpC family trpC - 4.1.1.48,5.3.1.24 ko:K01609,ko:K13498 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03508,R03509 RC00944,RC00945 ko00000,ko00001,ko00002,ko01000 - - - IGPS DYD2_k127_3163849_3 398767.Glov_1212 6.36e-49 182.0 COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,42QQ3@68525|delta/epsilon subdivisions,2WNPH@28221|Deltaproteobacteria,43U0C@69541|Desulfuromonadales 28221|Deltaproteobacteria F Belongs to the TrpF family trpF - 5.3.1.24 ko:K01817 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03509 RC00945 ko00000,ko00001,ko00002,ko01000 - - - PRAI DYD2_k127_3170326_0 272134.KB731324_gene2643 3.708e-178 571.0 COG0364@1|root,COG0364@2|Bacteria,1G0K9@1117|Cyanobacteria,1H8E8@1150|Oscillatoriales 1117|Cyanobacteria G Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone zwf - 1.1.1.363,1.1.1.49 ko:K00036 ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230 M00004,M00006,M00008 R00835,R02736,R10907 RC00001,RC00066 ko00000,ko00001,ko00002,ko01000,ko04147 - - - G6PD_C,G6PD_N DYD2_k127_3170326_2 1303518.CCALI_02738 2.469e-89 297.0 COG0066@1|root,COG0066@2|Bacteria 2|Bacteria E 3-isopropylmalate dehydratase activity leuD - 4.2.1.33,4.2.1.35 ko:K01704 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R10170 RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase_C DYD2_k127_3170326_1 1382359.JIAL01000001_gene639 1.263e-121 394.0 COG0065@1|root,COG0065@2|Bacteria,3Y2ID@57723|Acidobacteria,2JI0J@204432|Acidobacteriia 204432|Acidobacteriia E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuC - 4.2.1.33,4.2.1.35 ko:K01703 ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase DYD2_k127_3183927_2 1040987.AZUY01000001_gene2606 8.86e-06 48.0 COG2335@1|root,COG2335@2|Bacteria,1MZ8G@1224|Proteobacteria,2U5ZN@28211|Alphaproteobacteria,43PZ7@69277|Phyllobacteriaceae 28211|Alphaproteobacteria M A domain in the BMP inhibitor chordin and in microbial proteins. - - - - - - - - - - - - CHRD DYD2_k127_3183927_0 89187.ISM_13850 2.868e-125 403.0 COG0655@1|root,COG0655@2|Bacteria,1N5Q7@1224|Proteobacteria,2U5RW@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Multimeric flavodoxin WrbA - - - - - - - - - - - - FMN_red DYD2_k127_3183927_1 269796.Rru_A0580 1.686e-63 224.0 COG1764@1|root,COG1764@2|Bacteria,1RH9U@1224|Proteobacteria,2U768@28211|Alphaproteobacteria,2JSVD@204441|Rhodospirillales 204441|Rhodospirillales O OsmC-like protein osmC - - ko:K04063 - - - - ko00000 - - - OsmC DYD2_k127_3188491_1 234267.Acid_4772 4.865e-31 125.0 COG1695@1|root,COG1695@2|Bacteria,3Y7WH@57723|Acidobacteria 57723|Acidobacteria K PFAM Transcriptional regulator - - - - - - - - - - - - PadR DYD2_k127_3188491_0 1267535.KB906767_gene5108 7.769e-170 564.0 COG0577@1|root,COG0577@2|Bacteria,3Y31H@57723|Acidobacteria,2JITF@204432|Acidobacteriia 204432|Acidobacteriia V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_3189709_1 1304878.AUGD01000014_gene3071 2.774e-06 52.0 28JZT@1|root,2Z9PS@2|Bacteria,1R3QM@1224|Proteobacteria,2U3S5@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3189709_2 887325.HMPREF0381_1164 0.0002229 48.0 COG0515@1|root,COG0515@2|Bacteria,1TP3F@1239|Firmicutes,2492G@186801|Clostridia,1HUX7@1164882|Lachnoanaerobaculum 186801|Clostridia KLT PASTA prkC - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PASTA,Pkinase DYD2_k127_3189709_0 1174528.JH992898_gene2428 6.543e-08 57.0 COG3631@1|root,COG3631@2|Bacteria,1G81B@1117|Cyanobacteria 1117|Cyanobacteria S SnoaL-like domain - - 5.3.3.1 ko:K01822 ko00140,ko00984,ko01100,ko01120,map00140,map00984,map01100,map01120 M00107,M00110 R01837,R02216,R02499,R02840,R03327,R04163,R04678,R04849,R09955 RC00146,RC00762 ko00000,ko00001,ko00002,ko01000 - - - SnoaL_2 DYD2_k127_31948_0 640512.BC1003_2239 1.698e-05 54.0 COG1315@1|root,COG3210@1|root,COG1315@2|Bacteria,COG3210@2|Bacteria,1QDZF@1224|Proteobacteria,2VPRR@28216|Betaproteobacteria,1K197@119060|Burkholderiaceae 28216|Betaproteobacteria U COG3209 Rhs family protein - - - ko:K15125 ko05133,map05133 - - - ko00000,ko00001,ko00536 - - - DUF637,Fil_haemagg,Fil_haemagg_2,Haemagg_act DYD2_k127_3201994_5 500153.JOEK01000001_gene3706 4.887e-27 117.0 COG0454@1|root,COG0456@2|Bacteria,2IIQV@201174|Actinobacteria 201174|Actinobacteria K Acetyltransferase (GNAT) family - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_10 DYD2_k127_3201994_7 1232410.KI421412_gene336 1.37e-20 93.0 29SGJ@1|root,2ZKKB@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_3201994_6 1232410.KI421412_gene337 9.335e-21 94.0 2C59E@1|root,2ZDAY@2|Bacteria 2|Bacteria S OsmC-like protein - - - - - - - - - - - - OsmC DYD2_k127_3201994_4 744979.R2A130_3621 7.901e-33 132.0 COG5470@1|root,COG5470@2|Bacteria,1MYBG@1224|Proteobacteria,2UBFI@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Domain of unknown function (DUF1330) - - - - - - - - - - - - DUF1330 DYD2_k127_3201994_1 1386089.N865_20905 1.875e-114 374.0 COG2267@1|root,COG2267@2|Bacteria,2HEX8@201174|Actinobacteria,4FIB8@85021|Intrasporangiaceae 201174|Actinobacteria I Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1,Glyco_tran_28_C DYD2_k127_3201994_10 533247.CRD_02150 1.307e-08 66.0 COG2755@1|root,COG2755@2|Bacteria,1G060@1117|Cyanobacteria 1117|Cyanobacteria E GDSL-like Lipase/Acylhydrolase - - - - - - - - - - - - Lipase_GDSL DYD2_k127_3201994_3 1120956.JHZK01000002_gene859 5.785e-63 222.0 COG3757@1|root,COG3757@2|Bacteria,1R57X@1224|Proteobacteria,2U1NJ@28211|Alphaproteobacteria 28211|Alphaproteobacteria M M1 (1,4-beta-N-acetylmuramidase) - - - ko:K07273 - - - - ko00000 - - - Glyco_hydro_25 DYD2_k127_3201994_9 204669.Acid345_3258 6.341e-16 83.0 COG3369@1|root,COG3369@2|Bacteria,3Y5KG@57723|Acidobacteria,2JJXU@204432|Acidobacteriia 204432|Acidobacteriia S PFAM Iron sulphur-containing domain, CDGSH-type - - - - - - - - - - - - zf-CDGSH DYD2_k127_3201994_0 314278.NB231_07462 1.028e-167 533.0 COG2230@1|root,COG2230@2|Bacteria,1QY55@1224|Proteobacteria,1RYEN@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Putative methyltransferase - - - - - - - - - - - - Methyltransf_31 DYD2_k127_3201994_2 118166.JH976537_gene4259 3.633e-102 340.0 COG3217@1|root,COG3217@2|Bacteria,1G2HY@1117|Cyanobacteria 1117|Cyanobacteria S MOSC domain containing protein - - - ko:K07140 - - - - ko00000 - - - MOSC,MOSC_N DYD2_k127_3206952_3 1070319.CAGGBEG34_190038 3.092e-41 159.0 COG2027@1|root,COG2027@2|Bacteria,1MW40@1224|Proteobacteria,2VH20@28216|Betaproteobacteria,1JZWN@119060|Burkholderiaceae 28216|Betaproteobacteria M D-alanyl-d-alanine carboxypeptidase dacB - 3.4.16.4 ko:K07259 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Peptidase_S13 DYD2_k127_3206952_2 1303518.CCALI_00460 2.448e-66 236.0 COG0253@1|root,COG0253@2|Bacteria 2|Bacteria E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan dapF - 5.1.1.7 ko:K01778 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00527 R02735 RC00302 ko00000,ko00001,ko00002,ko01000 - - - DAP_epimerase DYD2_k127_3206952_4 314230.DSM3645_20192 9.152e-41 166.0 COG1520@1|root,COG1520@2|Bacteria,2IYZY@203682|Planctomycetes 203682|Planctomycetes S protein kinase related protein - - - - - - - - - - - - PQQ_2,PQQ_3 DYD2_k127_3206952_6 1042877.GQS_05720 1.264e-27 120.0 COG0518@1|root,arCOG00087@2157|Archaea,2XT3G@28890|Euryarchaeota,242WF@183968|Thermococci 183968|Thermococci F Catalyzes the synthesis of GMP from XMP guaAA GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase DYD2_k127_3206952_8 861299.J421_2531 1.271e-17 89.0 COG3584@1|root,COG3584@2|Bacteria 2|Bacteria T 3D domain protein - - - - - - - - - - - - 3D,SH3_3,SLH DYD2_k127_3206952_0 1382304.JNIL01000001_gene632 2.003e-89 307.0 COG4448@1|root,COG4448@2|Bacteria,1TRWI@1239|Firmicutes,4HAM1@91061|Bacilli,27A7C@186823|Alicyclobacillaceae 91061|Bacilli E L-asparaginase II - - - - - - - - - - - - Asparaginase_II DYD2_k127_3206952_1 1128421.JAGA01000002_gene1359 1.01e-80 284.0 COG0520@1|root,COG0520@2|Bacteria,2NP4B@2323|unclassified Bacteria 2|Bacteria E DegT/DnrJ/EryC1/StrS aminotransferase family - - - - - - - - - - - - Aminotran_5 DYD2_k127_3206952_10 240015.ACP_1918 5.215e-05 55.0 29QWH@1|root,30BWY@2|Bacteria,3Y4SG@57723|Acidobacteria,2JJDK@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_3206952_9 1229203.KI301992_gene1923 7.623e-08 61.0 COG3428@1|root,COG3428@2|Bacteria,2I7V5@201174|Actinobacteria,3UX0M@52018|unclassified Actinobacteria (class) 201174|Actinobacteria S Bacterial PH domain - - - - - - - - - - - - bPH_2 DYD2_k127_3206952_5 631362.Thi970DRAFT_00444 8.069e-36 147.0 COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,1S8R3@1236|Gammaproteobacteria,1WZ62@135613|Chromatiales 135613|Chromatiales M Transglycosylase SLT domain - - - - - - - - - - - - DUF4124,SLT DYD2_k127_3206952_11 391619.PGA1_c23670 5.735e-05 51.0 COG3409@1|root,COG3409@2|Bacteria,1RIC1@1224|Proteobacteria,2UAB2@28211|Alphaproteobacteria,34FNW@302485|Phaeobacter 28211|Alphaproteobacteria M Putative peptidoglycan binding domain - - - - - - - - - - - - PG_binding_1 DYD2_k127_3206952_7 1123371.ATXH01000014_gene1607 1.174e-26 115.0 COG0013@1|root,COG0013@2|Bacteria,2GH36@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD DYD2_k127_3207214_3 765420.OSCT_0873 3.178e-10 65.0 COG0463@1|root,COG0463@2|Bacteria,2G5JH@200795|Chloroflexi,3768U@32061|Chloroflexia 32061|Chloroflexia M Glycosyltransferase like family 2 - - - ko:K20534 - - - - ko00000,ko01000,ko01005,ko02000 4.D.2.1.9 GT2 - Glycos_transf_2 DYD2_k127_3207214_5 335992.SAR11_0366 0.000686 44.0 COG0289@1|root,COG0289@2|Bacteria,1MUCT@1224|Proteobacteria,2TSFJ@28211|Alphaproteobacteria,4BQ3I@82117|unclassified Alphaproteobacteria 28211|Alphaproteobacteria E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate dapB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - - DapB_C,DapB_N DYD2_k127_3207214_0 215803.DB30_4304 6.325e-160 520.0 COG1216@1|root,COG4976@1|root,COG1216@2|Bacteria,COG4976@2|Bacteria,1R50T@1224|Proteobacteria,42P74@68525|delta/epsilon subdivisions,2WK88@28221|Deltaproteobacteria 28221|Deltaproteobacteria S PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2,Methyltransf_23 DYD2_k127_3207214_4 56780.SYN_02162 1.355e-05 48.0 COG0289@1|root,COG0289@2|Bacteria,1MUCT@1224|Proteobacteria,42N84@68525|delta/epsilon subdivisions,2WJKT@28221|Deltaproteobacteria,2MREE@213462|Syntrophobacterales 28221|Deltaproteobacteria E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate dapB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - - DapB_C,DapB_N DYD2_k127_3207214_2 488538.SAR116_2346 8.675e-17 91.0 COG2520@1|root,COG2520@2|Bacteria 2|Bacteria J tRNA (guanine(37)-N(1))-methyltransferase activity - - - - - - - - - - - - Methyltransf_21 DYD2_k127_3207214_1 1267535.KB906767_gene5486 2.486e-26 113.0 COG1835@1|root,COG1835@2|Bacteria,3Y4RF@57723|Acidobacteria,2JJ80@204432|Acidobacteriia 204432|Acidobacteriia I PFAM Acyltransferase - - - - - - - - - - - - Acyl_transf_3 DYD2_k127_3208595_2 1267533.KB906740_gene174 2.964e-16 93.0 COG2319@1|root,COG3511@1|root,COG2319@2|Bacteria,COG3511@2|Bacteria,3Y7KE@57723|Acidobacteria,2JMQB@204432|Acidobacteriia 204432|Acidobacteriia M Phosphoesterase family - - - - - - - - - - - - Phosphoesterase DYD2_k127_3208595_0 1499967.BAYZ01000153_gene1545 4.15e-60 216.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria 2|Bacteria S CHAT domain - - - - - - - - - - - - CHAT,TPR_10,TPR_12,TPR_7,TPR_8 DYD2_k127_3208595_1 1122925.KB895377_gene1241 4.582e-35 150.0 COG2801@1|root,COG2801@2|Bacteria,1TSH4@1239|Firmicutes,4HDYB@91061|Bacilli,26XJG@186822|Paenibacillaceae 91061|Bacilli L Mu transposase, C-terminal - - - ko:K07497 - - - - ko00000 - - - HTH_23,HTH_28,Mu-transpos_C,rve DYD2_k127_3209954_3 1047013.AQSP01000139_gene2325 2.362e-08 63.0 COG3595@1|root,COG3595@2|Bacteria,2NQ1F@2323|unclassified Bacteria 2|Bacteria S Putative adhesin - - - - - - - - - - - - DUF4097 DYD2_k127_3209954_4 172088.AUGA01000024_gene860 0.0003976 51.0 COG5662@1|root,COG5662@2|Bacteria,1MV95@1224|Proteobacteria,2TVRG@28211|Alphaproteobacteria,3JRXS@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria K Putative zinc-finger - - - - - - - - - - - - zf-HC2 DYD2_k127_3209954_1 1242864.D187_002705 1.765e-29 125.0 COG1595@1|root,COG1595@2|Bacteria,1MX7T@1224|Proteobacteria,42URE@68525|delta/epsilon subdivisions 1224|Proteobacteria K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_3209954_0 56107.Cylst_4452 3.836e-33 138.0 COG0457@1|root,COG0457@2|Bacteria,1G20P@1117|Cyanobacteria 1117|Cyanobacteria O tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_2 DYD2_k127_3210028_1 1198114.AciX9_1009 2.249e-52 196.0 COG1403@1|root,COG1403@2|Bacteria 2|Bacteria V endonuclease activity - - - ko:K07451 - - - - ko00000,ko01000,ko02048 - - - HNH,HNH_4,HNH_5 DYD2_k127_3210028_2 338969.Rfer_1209 2.908e-49 179.0 COG0537@1|root,COG0537@2|Bacteria,1N3EA@1224|Proteobacteria,2VSGA@28216|Betaproteobacteria,4AJE5@80864|Comamonadaceae 28216|Betaproteobacteria FG Scavenger mRNA decapping enzyme C-term binding - - - - - - - - - - - - HIT DYD2_k127_3210028_0 296591.Bpro_0004 3.363e-235 746.0 COG3410@1|root,COG3410@2|Bacteria,1PRQ3@1224|Proteobacteria,2VPEI@28216|Betaproteobacteria,4AG9B@80864|Comamonadaceae 28216|Betaproteobacteria L Uncharacterized conserved protein (DUF2075) - - - - - - - - - - - - DUF2075 DYD2_k127_3210028_3 1128421.JAGA01000002_gene275 2.076e-32 130.0 COG0251@1|root,COG0251@2|Bacteria,2NPSA@2323|unclassified Bacteria 2|Bacteria J Endoribonuclease L-PSP rutC GO:0006139,GO:0006206,GO:0006208,GO:0006212,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0017144,GO:0019740,GO:0019860,GO:0034641,GO:0042737,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.99.10 ko:K09021,ko:K09022 ko00240,ko01100,map00240,map01100 - R09982,R11098,R11099 RC02768,RC03275,RC03354 ko00000,ko00001,ko01000 - - - Ribonuc_L-PSP DYD2_k127_3211391_1 671143.DAMO_1399 7.762e-46 173.0 COG0352@1|root,COG0352@2|Bacteria,2NPCU@2323|unclassified Bacteria 2|Bacteria H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) thiE GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3,2.7.1.49,2.7.4.7 ko:K00788,ko:K14153 ko00730,ko01100,map00730,map01100 M00127 R03223,R03471,R04509,R10712 RC00002,RC00017,RC00224,RC03255,RC03397 ko00000,ko00001,ko00002,ko01000 - - - TMP-TENI DYD2_k127_3211391_0 204669.Acid345_0689 5.044e-125 411.0 COG2805@1|root,COG2805@2|Bacteria,3Y316@57723|Acidobacteria,2JIT4@204432|Acidobacteriia 204432|Acidobacteriia NU Type II/IV secretion system protein - - - ko:K02669 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE DYD2_k127_3211391_2 1304885.AUEY01000022_gene3394 2.359e-06 57.0 COG0745@1|root,COG0745@2|Bacteria,1QW1Y@1224|Proteobacteria,43BS5@68525|delta/epsilon subdivisions,2X72Y@28221|Deltaproteobacteria,2MPJE@213118|Desulfobacterales 28221|Deltaproteobacteria KT zinc-ribbon domain - - - - - - - - - - - - Response_reg,zinc_ribbon_4 DYD2_k127_3211499_1 517418.Ctha_0361 1.833e-104 356.0 COG0367@1|root,COG0367@2|Bacteria,1FDEI@1090|Chlorobi 1090|Chlorobi F TIGRFAM asparagine synthase (glutamine-hydrolyzing) - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_3211499_0 468059.AUHA01000002_gene1161 8.457e-200 645.0 COG0673@1|root,COG1063@1|root,COG0673@2|Bacteria,COG1063@2|Bacteria,4NFEW@976|Bacteroidetes 976|Bacteroidetes E Oxidoreductase NAD-binding domain protein - - - ko:K02030,ko:K03810 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - ADH_zinc_N,GFO_IDH_MocA DYD2_k127_3211499_3 1122611.KB903952_gene6193 2.991e-66 242.0 COG0438@1|root,COG1216@1|root,COG0438@2|Bacteria,COG1216@2|Bacteria,2I5Z7@201174|Actinobacteria,4ENV6@85012|Streptosporangiales 201174|Actinobacteria M Glycosyltransferase like family 2 - - 2.4.1.289 ko:K16870 - - - - ko00000,ko01000,ko01003 - - - Glyco_tranf_2_3,Glyco_trans_1_4,Glyco_trans_2_3,Glycos_transf_2 DYD2_k127_3211499_6 1089553.Tph_c14180 4.632e-14 85.0 COG1807@1|root,COG1807@2|Bacteria,1V1HJ@1239|Firmicutes,249BG@186801|Clostridia,42HAV@68295|Thermoanaerobacterales 186801|Clostridia M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - PMT_2 DYD2_k127_3211499_2 517418.Ctha_2018 9.084e-79 275.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups wxcD - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_3211499_4 1123033.ARNF01000087_gene1433 8.756e-30 130.0 COG1215@1|root,COG1215@2|Bacteria,1NDQI@1224|Proteobacteria,1S7MC@1236|Gammaproteobacteria,3NT2N@468|Moraxellaceae 1236|Gammaproteobacteria M Glycosyltransferase like family 2 wapR - - ko:K12988 - - - - ko00000,ko01000,ko01003,ko01005 - GT2 - Glycos_transf_2 DYD2_k127_3211499_5 244582.JQAK01000001_gene1683 4.941e-22 98.0 COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,2TSCY@28211|Alphaproteobacteria,47EYH@766|Rickettsiales 766|Rickettsiales E Glutamine amidotransferase domain - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_3220893_3 313624.NSP_21920 1.734e-16 87.0 COG1352@1|root,COG1352@2|Bacteria,1G1W9@1117|Cyanobacteria,1HK56@1161|Nostocales 1117|Cyanobacteria NT PFAM CheR methyltransferase, SAM binding domain - - 2.1.1.80,3.1.1.61 ko:K00575,ko:K13924 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - CheR,CheR_N,PAS,PAS_4,PAS_9 DYD2_k127_3220893_2 420324.KI911965_gene947 1.032e-21 104.0 COG2823@1|root,COG2823@2|Bacteria,1N1R4@1224|Proteobacteria,2UUN7@28211|Alphaproteobacteria 28211|Alphaproteobacteria S BON domain - - - - - - - - - - - - BON DYD2_k127_3220893_1 1095769.CAHF01000006_gene1856 4.561e-61 214.0 COG5637@1|root,COG5637@2|Bacteria,1RCEX@1224|Proteobacteria,2VQP4@28216|Betaproteobacteria,4771P@75682|Oxalobacteraceae 28216|Betaproteobacteria O Polyketide cyclase / dehydrase and lipid transport - - - - - - - - - - - - Polyketide_cyc DYD2_k127_3220893_0 1267535.KB906767_gene1580 4.817e-136 443.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups MA20_17390 - - ko:K00713,ko:K06338 - - - - ko00000,ko01000,ko01003,ko01005 - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_3220893_4 500153.JOEK01000015_gene2796 1.269e-10 64.0 COG5083@1|root,COG5083@2|Bacteria,2IFC7@201174|Actinobacteria 201174|Actinobacteria S phosphatidylinositol transporter activity - - - - - - - - - - - - Acid_phosphat_B DYD2_k127_322289_5 909663.KI867150_gene2770 0.0002223 43.0 COG3464@1|root,COG3464@2|Bacteria,1R8B7@1224|Proteobacteria 1224|Proteobacteria L Transposase - - - - - - - - - - - - UPF0236 DYD2_k127_322289_2 1283299.AUKG01000002_gene4915 2.56e-26 122.0 COG1520@1|root,COG1520@2|Bacteria,2HF4U@201174|Actinobacteria,4CPDR@84995|Rubrobacteria 84995|Rubrobacteria S PQQ enzyme repeat - - - - - - - - - - - - PQQ_2,PQQ_3 DYD2_k127_322289_0 1267535.KB906767_gene3613 1.89e-50 190.0 COG1183@1|root,COG1183@2|Bacteria,3Y3I7@57723|Acidobacteria,2JIEG@204432|Acidobacteriia 204432|Acidobacteriia I Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - 2.7.8.8 ko:K17103 ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110 M00093 R01800 RC00002,RC00017,RC02795 ko00000,ko00001,ko00002,ko01000 - - - CDP-OH_P_transf DYD2_k127_322289_1 484770.UFO1_2362 2.062e-48 180.0 COG0688@1|root,COG0688@2|Bacteria,1V3FQ@1239|Firmicutes,4H45T@909932|Negativicutes 909932|Negativicutes I Belongs to the phosphatidylserine decarboxylase family. PSD-A subfamily psd - 4.1.1.65 ko:K01613 ko00564,ko01100,ko01110,map00564,map01100,map01110 M00093 R02055 RC00299 ko00000,ko00001,ko00002,ko01000 - - - PS_Dcarbxylase DYD2_k127_322289_3 1499967.BAYZ01000173_gene5814 3.994e-22 102.0 COG0454@1|root,COG0456@2|Bacteria,2NPTV@2323|unclassified Bacteria 2|Bacteria K This enzyme acetylates the N-terminal alanine of ribosomal protein S18 rimI - 2.3.1.128 ko:K03789,ko:K14742 - - - - ko00000,ko01000,ko03009,ko03016 - - - Acetyltransf_1,Acetyltransf_10 DYD2_k127_322391_0 1340493.JNIF01000003_gene2787 3.864e-37 148.0 COG1595@1|root,COG1595@2|Bacteria,3Y4IW@57723|Acidobacteria 57723|Acidobacteria K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_322391_2 58123.JOFJ01000016_gene4067 0.0008049 50.0 COG5662@1|root,COG5662@2|Bacteria,2GNCC@201174|Actinobacteria,4EKFN@85012|Streptosporangiales 201174|Actinobacteria K Putative zinc-finger - - - - - - - - - - - - zf-HC2 DYD2_k127_322391_1 909663.KI867150_gene2770 0.0002223 43.0 COG3464@1|root,COG3464@2|Bacteria,1R8B7@1224|Proteobacteria 1224|Proteobacteria L Transposase - - - - - - - - - - - - UPF0236 DYD2_k127_3225811_0 204669.Acid345_1286 3.551e-137 454.0 COG1190@1|root,COG1190@2|Bacteria,3Y3N0@57723|Acidobacteria,2JI1W@204432|Acidobacteriia 204432|Acidobacteriia J Belongs to the class-II aminoacyl-tRNA synthetase family lysS - 6.1.1.6 ko:K04567 ko00970,map00970 M00359,M00360 R03658 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon DYD2_k127_3225811_3 882.DVU_2125 8.831e-06 58.0 COG0457@1|root,COG0457@2|Bacteria,1PDTX@1224|Proteobacteria,42RK5@68525|delta/epsilon subdivisions,2WNZC@28221|Deltaproteobacteria,2M93P@213115|Desulfovibrionales 28221|Deltaproteobacteria D repeat-containing protein - - - - - - - - - - - - SPOR,TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_8 DYD2_k127_3225811_1 1236959.BAMT01000001_gene1306 1.982e-34 145.0 COG4447@1|root,COG4447@2|Bacteria,1RCNG@1224|Proteobacteria,2WFGN@28216|Betaproteobacteria 28216|Betaproteobacteria S Photosynthesis system II assembly factor YCF48 - - - - - - - - - - - - BNR,PSII_BNR DYD2_k127_3225811_2 1121441.AUCX01000008_gene2153 1.164e-17 89.0 COG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,42SP0@68525|delta/epsilon subdivisions,2WNYF@28221|Deltaproteobacteria,2MAXP@213115|Desulfovibrionales 28221|Deltaproteobacteria M PFAM Polysaccharide export protein - - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB DYD2_k127_3229147_0 63737.Npun_R3427 1.812e-144 480.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_3231059_2 204669.Acid345_2969 1.268e-24 106.0 COG0204@1|root,COG1022@1|root,COG0204@2|Bacteria,COG1022@2|Bacteria,3Y3GW@57723|Acidobacteria,2JHKK@204432|Acidobacteriia 204432|Acidobacteriia I Phosphate acyltransferases - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C,Acyltransferase,PP-binding DYD2_k127_3231059_5 311424.DhcVS_1396 3.361e-06 53.0 COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,2G7Y4@200795|Chloroflexi,34CNC@301297|Dehalococcoidia 301297|Dehalococcoidia T PFAM ATP-binding region ATPase domain protein - - - - - - - - - - - - 5TM-5TMR_LYT,HATPase_c,HisKA,PAS_9,Response_reg DYD2_k127_3231059_3 314264.ROS217_02810 1.225e-15 82.0 COG4876@1|root,COG4876@2|Bacteria,1QVW6@1224|Proteobacteria,2TWKV@28211|Alphaproteobacteria,46R4T@74030|Roseovarius 28211|Alphaproteobacteria S Uncharacterized protein conserved in bacteria (DUF2188) - - - - - - - - - - - - DUF2188 DYD2_k127_3231059_1 1122169.AREN01000014_gene2737 2.661e-54 199.0 2AP2K@1|root,31E40@2|Bacteria,1N3BH@1224|Proteobacteria,1STBY@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3231059_4 1267534.KB906755_gene3915 5.078e-15 85.0 2DPEJ@1|root,331S0@2|Bacteria,3Y4CR@57723|Acidobacteria,2JP6H@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_3231059_0 1382359.JIAL01000001_gene12 1.354e-216 692.0 COG1964@1|root,COG1964@2|Bacteria,3Y2WC@57723|Acidobacteria,2JHTH@204432|Acidobacteriia 204432|Acidobacteriia S Radical SAM - - - - - - - - - - - - Fer4_12,Radical_SAM DYD2_k127_3240636_1 880072.Desac_1807 5.605e-34 144.0 COG0464@1|root,COG0464@2|Bacteria,1NF48@1224|Proteobacteria,43BJ4@68525|delta/epsilon subdivisions,2WMCV@28221|Deltaproteobacteria,2MQYF@213462|Syntrophobacterales 28221|Deltaproteobacteria O ATPase family associated with various cellular activities (AAA) - - - - - - - - - - - - AAA DYD2_k127_3249570_2 861299.J421_0340 1.004e-12 79.0 COG3595@1|root,COG3595@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF4097,PA14 DYD2_k127_3249570_3 1123261.AXDW01000007_gene2277 2.574e-11 73.0 COG3595@1|root,COG3595@2|Bacteria,1P19T@1224|Proteobacteria,1RRSR@1236|Gammaproteobacteria,1X62K@135614|Xanthomonadales 135614|Xanthomonadales S Putative adhesin - - - - - - - - - - - - DUF4097 DYD2_k127_3249570_4 234267.Acid_0792 2.833e-05 54.0 COG5662@1|root,COG5662@2|Bacteria,3Y4S0@57723|Acidobacteria 57723|Acidobacteria K Putative zinc-finger - - - - - - - - - - - - zf-HC2 DYD2_k127_3249570_1 1198114.AciX9_2646 8.403e-61 215.0 COG1595@1|root,COG1595@2|Bacteria,3Y3HD@57723|Acidobacteria,2JHY0@204432|Acidobacteriia 204432|Acidobacteriia K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_3249570_0 335543.Sfum_2637 3.141e-170 549.0 COG0606@1|root,COG0606@2|Bacteria,1MU4R@1224|Proteobacteria,42NBJ@68525|delta/epsilon subdivisions,2WJ52@28221|Deltaproteobacteria,2MQX1@213462|Syntrophobacterales 28221|Deltaproteobacteria O PFAM magnesium chelatase comM - - ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C DYD2_k127_3285845_1 118163.Ple7327_3991 3.154e-61 216.0 COG1104@1|root,COG1104@2|Bacteria,1G0D5@1117|Cyanobacteria,3VIP5@52604|Pleurocapsales 1117|Cyanobacteria E Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine nifS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 DYD2_k127_3285845_4 247490.KSU1_B0629 2.694e-36 145.0 COG0694@1|root,COG0822@1|root,COG0694@2|Bacteria,COG0822@2|Bacteria,2J0CA@203682|Planctomycetes 203682|Planctomycetes C PFAM nitrogen-fixing NifU domain protein - - - ko:K04488 - - - - ko00000 - - - NifU_N DYD2_k127_3285845_0 316274.Haur_0326 8.437e-109 364.0 COG0489@1|root,COG0489@2|Bacteria,2G60P@200795|Chloroflexi,374U8@32061|Chloroflexia 32061|Chloroflexia D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP - - - ko:K03593 - - - - ko00000,ko03029,ko03036 - - - FeS_assembly_P,ParA DYD2_k127_3285845_5 861299.J421_3606 2.472e-35 138.0 COG0316@1|root,COG0316@2|Bacteria,1ZTT0@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Iron-sulphur cluster biosynthesis - - - - - - - - - - - - Fe-S_biosyn DYD2_k127_3285845_2 1192034.CAP_4824 3.413e-49 180.0 COG0454@1|root,COG0456@2|Bacteria,1Q1ZZ@1224|Proteobacteria,42USA@68525|delta/epsilon subdivisions,2WQ2Q@28221|Deltaproteobacteria,2YVDC@29|Myxococcales 28221|Deltaproteobacteria K FR47-like protein - - - - - - - - - - - - Acetyltransf_1 DYD2_k127_3285845_3 886293.Sinac_1347 2.832e-37 143.0 COG0633@1|root,COG0633@2|Bacteria,2J0FV@203682|Planctomycetes 203682|Planctomycetes C 2Fe-2S iron-sulfur cluster binding domain - - - - - - - - - - - - Fer2 DYD2_k127_3285845_6 204669.Acid345_4342 1.067e-30 132.0 COG3748@1|root,COG3748@2|Bacteria 2|Bacteria S Urate oxidase N-terminal MA20_17625 - - - - - - - - - - - Urate_ox_N DYD2_k127_3327543_1 870187.Thini_1806 1.151e-59 213.0 COG1898@1|root,COG1898@2|Bacteria,1RDAB@1224|Proteobacteria,1S5T5@1236|Gammaproteobacteria,462QJ@72273|Thiotrichales 72273|Thiotrichales M Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose - - 5.1.3.13 ko:K01790 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R06514 RC01531 ko00000,ko00001,ko00002,ko01000 - - - dTDP_sugar_isom DYD2_k127_3327543_0 1185652.USDA257_c10760 2.72e-101 336.0 COG2605@1|root,COG2605@2|Bacteria,1PDHJ@1224|Proteobacteria,2U1G3@28211|Alphaproteobacteria,4BIX8@82115|Rhizobiaceae 28211|Alphaproteobacteria S GHMP kinases C terminal - - 2.7.1.168 ko:K07031 ko00540,map00540 - R09770 RC00002,RC00078 ko00000,ko00001,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD2_k127_3330854_0 1191523.MROS_2208 3.756e-70 262.0 COG1629@1|root,COG4771@2|Bacteria 2|Bacteria P TonB-dependent receptor irp - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec DYD2_k127_3330854_1 278963.ATWD01000001_gene4313 1.941e-13 83.0 COG3103@1|root,COG3103@2|Bacteria,3Y3S0@57723|Acidobacteria,2JIYP@204432|Acidobacteriia 204432|Acidobacteriia T Sh3 type 3 domain protein - - - - - - - - - - - - SH3_3,SH3_8 DYD2_k127_3330854_2 247490.KSU1_D0826 3.874e-13 78.0 2A5NZ@1|root,30UDS@2|Bacteria,2J3CU@203682|Planctomycetes 203682|Planctomycetes - - - - - - - - - - - - - - - DYD2_k127_3332435_1 1132855.KB913035_gene1339 1.115e-17 89.0 2EC2G@1|root,30XX8@2|Bacteria,1PJS3@1224|Proteobacteria,2W85A@28216|Betaproteobacteria,2KNZG@206350|Nitrosomonadales 206350|Nitrosomonadales - - - - - - - - - - - - - - - DYD2_k127_3332435_0 891968.Anamo_1400 1.645e-53 195.0 COG1620@1|root,COG1620@2|Bacteria,3TBC8@508458|Synergistetes 508458|Synergistetes C L-lactate permease - - - ko:K03303 - - - - ko00000,ko02000 2.A.14 - - Lactate_perm DYD2_k127_3332665_0 1380394.JADL01000013_gene703 7.195e-63 228.0 COG0667@1|root,COG0667@2|Bacteria,1R5BH@1224|Proteobacteria,2TS0A@28211|Alphaproteobacteria,2JVHZ@204441|Rhodospirillales 204441|Rhodospirillales C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD2_k127_3349174_3 234267.Acid_5658 7.928e-20 98.0 COG0457@1|root,COG0457@2|Bacteria,3Y5YE@57723|Acidobacteria 57723|Acidobacteria S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_3349174_2 861299.J421_6349 1.412e-25 113.0 COG3832@1|root,COG3832@2|Bacteria 2|Bacteria J glyoxalase III activity - - - - - - - - - - - - Polyketide_cyc2 DYD2_k127_3349174_0 215803.DB30_0576 0.0 1068.0 COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,42MUY@68525|delta/epsilon subdivisions,2X6WF@28221|Deltaproteobacteria,2YWNJ@29|Myxococcales 28221|Deltaproteobacteria E Peptidase family M3 dcp - 3.4.15.5 ko:K01284 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M3 DYD2_k127_3349174_1 448385.sce2762 2.627e-62 219.0 COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,42M4Z@68525|delta/epsilon subdivisions,2WJ0D@28221|Deltaproteobacteria,2YUHW@29|Myxococcales 28221|Deltaproteobacteria O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH-3 - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 DYD2_k127_335419_7 1097668.BYI23_C012360 3.795e-15 85.0 COG0715@1|root,COG0715@2|Bacteria,1R5H3@1224|Proteobacteria,2VIC6@28216|Betaproteobacteria,1K6GK@119060|Burkholderiaceae 28216|Betaproteobacteria M ABC transporter, phosphonate, periplasmic substrate-binding protein - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 DYD2_k127_335419_5 1123320.KB889596_gene8775 7.215e-21 96.0 COG0251@1|root,COG0251@2|Bacteria,2IHQ7@201174|Actinobacteria 201174|Actinobacteria J endoribonuclease L-PSP - - - - - - - - - - - - Ribonuc_L-PSP DYD2_k127_335419_3 877455.Metbo_0590 3.798e-87 300.0 COG0436@1|root,arCOG04897@2157|Archaea,2XURI@28890|Euryarchaeota,23NXC@183925|Methanobacteria 183925|Methanobacteria E PFAM Aminotransferase, class I - - - - - - - - - - - - Aminotran_1_2 DYD2_k127_335419_2 1380394.JADL01000004_gene6049 1.357e-103 353.0 COG1167@1|root,COG1167@2|Bacteria,1MUJE@1224|Proteobacteria,2TQZZ@28211|Alphaproteobacteria,2JPG0@204441|Rhodospirillales 204441|Rhodospirillales K COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - - - - - - - - - - Aminotran_1_2,GntR DYD2_k127_335419_4 1037409.BJ6T_26140 7.471e-64 228.0 COG1028@1|root,COG1028@2|Bacteria,1NBB6@1224|Proteobacteria,2TVF5@28211|Alphaproteobacteria,3JXK5@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria IQ Enoyl-(Acyl carrier protein) reductase - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short,adh_short_C2 DYD2_k127_335419_1 1097668.BYI23_C005330 4.26e-104 346.0 COG0596@1|root,COG0596@2|Bacteria,1N3G3@1224|Proteobacteria,2WH3B@28216|Betaproteobacteria,1KIHJ@119060|Burkholderiaceae 28216|Betaproteobacteria S Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1 DYD2_k127_335419_0 1144342.PMI40_04480 1.252e-115 385.0 COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2VMZE@28216|Betaproteobacteria 28216|Betaproteobacteria E the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia - - 3.5.1.6,3.5.1.87 ko:K06016 ko00240,ko01100,map00240,map01100 M00046 R00905,R04666 RC00096 ko00000,ko00001,ko00002,ko01000 - - - Peptidase_M20 DYD2_k127_335419_6 634500.EbC_41600 1.773e-20 98.0 COG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,1RN13@1236|Gammaproteobacteria 1236|Gammaproteobacteria F Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - 3.5.4.28,3.5.4.31,3.5.4.32 ko:K12960,ko:K18456 ko00270,ko01100,map00270,map01100 - R09660 RC00477 ko00000,ko00001,ko01000 - - - Amidohydro_1 DYD2_k127_3362299_2 401053.AciPR4_3779 3.41e-21 94.0 COG0582@1|root,COG0582@2|Bacteria 2|Bacteria L DNA integration - - - - - - - - - - - - Phage_int_SAM_3,Phage_int_SAM_4,Phage_integrase DYD2_k127_3362299_0 1123284.KB899047_gene1756 1.752e-151 490.0 COG0402@1|root,COG0402@2|Bacteria,1TP43@1239|Firmicutes,4HBV3@91061|Bacilli,26PCJ@186821|Sporolactobacillaceae 91061|Bacilli F Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine mtaD - - - - - - - - - - - Amidohydro_1 DYD2_k127_3362299_1 234267.Acid_1013 1.227e-49 179.0 COG0468@1|root,COG0468@2|Bacteria,3Y3Y1@57723|Acidobacteria 57723|Acidobacteria L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage recA - - ko:K03553 ko03440,map03440 M00729 - - ko00000,ko00001,ko00002,ko03400 - - - RecA DYD2_k127_3370756_5 1380390.JIAT01000009_gene362 1.219e-66 243.0 COG1817@1|root,COG1817@2|Bacteria,2HQP4@201174|Actinobacteria,4CSA7@84995|Rubrobacteria 2|Bacteria S Protein of unknown function (DUF354) - - - ko:K09726 - - - - ko00000 - - - DUF354 DYD2_k127_3370756_1 211165.AJLN01000116_gene3438 6.525e-142 459.0 COG0399@1|root,COG0399@2|Bacteria,1G0IM@1117|Cyanobacteria,1JJ7R@1189|Stigonemataceae 1117|Cyanobacteria M Cys/Met metabolism PLP-dependent enzyme - - - - - - - - - - - - DegT_DnrJ_EryC1 DYD2_k127_3370756_0 306281.AJLK01000062_gene4979 3.365e-158 504.0 COG0673@1|root,COG0673@2|Bacteria,1G1CZ@1117|Cyanobacteria,1JK84@1189|Stigonemataceae 1117|Cyanobacteria S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD2_k127_3370756_4 306281.AJLK01000062_gene4980 2.344e-75 255.0 COG0110@1|root,COG0110@2|Bacteria,1G8S0@1117|Cyanobacteria,1JKNN@1189|Stigonemataceae 1117|Cyanobacteria S Hexapeptide repeat of succinyl-transferase - - - - - - - - - - - - Hexapep DYD2_k127_3370756_3 468059.AUHA01000002_gene1160 2.952e-91 315.0 COG1331@1|root,COG1331@2|Bacteria,4NIPN@976|Bacteroidetes 976|Bacteroidetes O Highly conserved protein containing a thioredoxin domain - - - - - - - - - - - - Glyco_hydro_88 DYD2_k127_3370756_2 1499967.BAYZ01000014_gene6407 8.176e-139 458.0 COG0367@1|root,COG0367@2|Bacteria,2NNKE@2323|unclassified Bacteria 2|Bacteria E PFAM asparagine synthase asnB - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_3398016_6 555079.Toce_0738 2.233e-40 154.0 COG0424@1|root,COG0424@2|Bacteria,1V6FH@1239|Firmicutes,24JRN@186801|Clostridia,42GIM@68295|Thermoanaerobacterales 186801|Clostridia D Maf-like protein maf - - ko:K06287 - - - - ko00000 - - - Maf DYD2_k127_3398016_2 1384054.N790_03180 7.438e-79 276.0 COG0154@1|root,COG3391@1|root,COG0154@2|Bacteria,COG3391@2|Bacteria,1MUVQ@1224|Proteobacteria,1RP7E@1236|Gammaproteobacteria,1X4K6@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia gatAX - 3.5.1.4 ko:K01426 ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120 - R02540,R03096,R03180,R03909,R05551,R05590 RC00010,RC00100,RC00950,RC01025 ko00000,ko00001,ko01000 - - - Amidase,Lipocalin_5 DYD2_k127_3398016_4 1382306.JNIM01000001_gene3716 1.846e-66 235.0 COG1028@1|root,COG1028@2|Bacteria,2G8CF@200795|Chloroflexi 200795|Chloroflexi IQ PFAM short-chain dehydrogenase reductase SDR - - - - - - - - - - - - adh_short,adh_short_C2 DYD2_k127_3398016_7 483219.LILAB_29905 6.853e-34 137.0 COG2353@1|root,COG2353@2|Bacteria,1R9XD@1224|Proteobacteria,42T4I@68525|delta/epsilon subdivisions,2WQG9@28221|Deltaproteobacteria 28221|Deltaproteobacteria S YceI-like domain - - - - - - - - - - - - YceI DYD2_k127_3398016_5 439235.Dalk_1739 2.814e-64 229.0 COG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,42ZTX@68525|delta/epsilon subdivisions,2WVID@28221|Deltaproteobacteria 28221|Deltaproteobacteria I Enoyl-CoA hydratase/isomerase - - 5.3.3.18 ko:K15866 ko00360,ko01120,map00360,map01120 - R09837,R09839 RC00004,RC00326,RC02689,RC03003 ko00000,ko00001,ko01000 - - iAF987.Gmet_2224 ECH_1 DYD2_k127_3398016_0 1379698.RBG1_1C00001G0806 1.522e-108 358.0 COG1024@1|root,COG1024@2|Bacteria,2NPAC@2323|unclassified Bacteria 2|Bacteria I Belongs to the enoyl-CoA hydratase isomerase family - - 4.2.1.17 ko:K01715 ko00650,ko01200,map00650,map01200 - R03026 RC00831 ko00000,ko00001,ko01000 - - - ECH_1 DYD2_k127_3398016_1 1123023.JIAI01000002_gene5476 1.194e-84 286.0 COG0030@1|root,COG0030@2|Bacteria,2GIZ8@201174|Actinobacteria,4DYTH@85010|Pseudonocardiales 201174|Actinobacteria J Methyltransferase domain - - - - - - - - - - - - Methyltransf_25 DYD2_k127_3398016_8 1379698.RBG1_1C00001G0893 1.507e-30 129.0 COG1309@1|root,COG1309@2|Bacteria,2NS0M@2323|unclassified Bacteria 2|Bacteria K Bacterial regulatory proteins, tetR family - - - ko:K09017 - - - - ko00000,ko03000 - - - TetR_C_4,TetR_N DYD2_k127_3398016_3 391625.PPSIR1_36257 1.465e-68 237.0 COG3396@1|root,COG3396@2|Bacteria,1MXUK@1224|Proteobacteria,437U1@68525|delta/epsilon subdivisions,2X33K@28221|Deltaproteobacteria,2YU2K@29|Myxococcales 28221|Deltaproteobacteria S benzoyl-CoA oxygenase - - 1.14.13.208 ko:K15512 ko00362,map00362 - R09555 RC01739 ko00000,ko00001,ko01000 - - - - DYD2_k127_3404550_0 926561.KB900617_gene2105 2.741e-57 214.0 COG0438@1|root,COG0438@2|Bacteria,1TPY6@1239|Firmicutes,24834@186801|Clostridia,3WC93@53433|Halanaerobiales 186801|Clostridia M Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_3404550_1 266117.Rxyl_2043 2.027e-49 179.0 COG2154@1|root,COG2154@2|Bacteria,2HPFQ@201174|Actinobacteria,4CQU3@84995|Rubrobacteria 84995|Rubrobacteria H Transcriptional coactivator pterin dehydratase - - 4.2.1.96 ko:K01724 ko00790,map00790 - R04734 RC01208 ko00000,ko00001,ko01000,ko04147 - - - Pterin_4a DYD2_k127_3404550_2 1279009.ADICEAN_02760 9.418e-42 158.0 COG2318@1|root,COG2318@2|Bacteria,4NRAP@976|Bacteroidetes,47NZT@768503|Cytophagia 976|Bacteroidetes S DinB superfamily - - - - - - - - - - - - DinB_2 DYD2_k127_3405513_0 1499967.BAYZ01000014_gene6405 4.492e-49 183.0 COG2227@1|root,COG2227@2|Bacteria 2|Bacteria H 3-demethylubiquinone-9 3-O-methyltransferase activity - - - - - - - - - - - - ADH_N,ADH_zinc_N,KAsynt_C_assoc,KR,Ketoacyl-synt_C,Methyltransf_11,Methyltransf_12,PP-binding,ketoacyl-synt DYD2_k127_3405513_1 1353529.M899_0151 7.383e-15 89.0 COG5549@1|root,COG5549@2|Bacteria 2|Bacteria O protein import - - - - - - - - - - - - DUF4214,DUF4953,DUF5117,DUF5118,MACPF,Peptidase_M10,Peptidase_M43 DYD2_k127_341106_1 706587.Desti_1671 1.571e-38 149.0 COG1063@1|root,COG1063@2|Bacteria,1MWX0@1224|Proteobacteria,43ASD@68525|delta/epsilon subdivisions,2X66J@28221|Deltaproteobacteria 28221|Deltaproteobacteria E PFAM Alcohol dehydrogenase - - - - - - - - - - - - ADH_N,ADH_zinc_N,Glu_dehyd_C DYD2_k127_341106_2 215803.DB30_0957 6.612e-12 71.0 COG2863@1|root,COG2863@2|Bacteria,1RKUY@1224|Proteobacteria,43BWX@68525|delta/epsilon subdivisions,2X77P@28221|Deltaproteobacteria,2Z1IB@29|Myxococcales 28221|Deltaproteobacteria C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - Cytochrome_CBB3 DYD2_k127_341106_0 1232410.KI421413_gene539 1.996e-174 558.0 COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,42MDB@68525|delta/epsilon subdivisions,2WITV@28221|Deltaproteobacteria,43RZA@69541|Desulfuromonadales 28221|Deltaproteobacteria F Glutamine amidotransferases class-II purF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_6,GATase_7,Pribosyltran DYD2_k127_3417727_0 1382359.JIAL01000001_gene2058 2.332e-122 407.0 COG1109@1|root,COG1109@2|Bacteria,3Y36F@57723|Acidobacteria,2JHU9@204432|Acidobacteriia 204432|Acidobacteriia G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate glmM - 5.4.2.10 ko:K03431 ko00520,ko01100,ko01130,map00520,map01100,map01130 - R02060 RC00408 ko00000,ko00001,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV DYD2_k127_3417727_3 671143.DAMO_1561 5.795e-17 92.0 COG4856@1|root,COG4856@2|Bacteria,2NQ44@2323|unclassified Bacteria 2|Bacteria S Evidence 5 No homology to any previously reported sequences dacA - - - - - - - - - - - YbbR DYD2_k127_3417727_1 204669.Acid345_0278 4.796e-60 218.0 COG1624@1|root,COG1624@2|Bacteria,3Y7NU@57723|Acidobacteria 57723|Acidobacteria S Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria dacA - - - - - - - - - - - DisA_N DYD2_k127_3417727_2 1298863.AUEP01000001_gene1082 9.888e-36 142.0 COG0053@1|root,COG0053@2|Bacteria,2GKSG@201174|Actinobacteria,4DPP7@85009|Propionibacteriales 201174|Actinobacteria P Cation efflux family - - - - - - - - - - - - Cation_efflux DYD2_k127_341793_1 330214.NIDE3435 9.23e-72 250.0 COG1131@1|root,COG1131@2|Bacteria,3J122@40117|Nitrospirae 40117|Nitrospirae V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_341793_2 272134.KB731324_gene6220 7.509e-25 108.0 COG0745@1|root,COG0745@2|Bacteria,1G6W5@1117|Cyanobacteria,1HBXB@1150|Oscillatoriales 1117|Cyanobacteria T Response regulator receiver - - - - - - - - - - - - Response_reg DYD2_k127_341793_3 1121918.ARWE01000001_gene1792 1.411e-05 55.0 COG4251@1|root,COG4251@2|Bacteria,1QUMQ@1224|Proteobacteria,43BMC@68525|delta/epsilon subdivisions,2X6ZI@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Signal transduction histidine kinase - - - - - - - - - - - - GAF_3,HATPase_c DYD2_k127_341793_0 1125863.JAFN01000001_gene1446 1.316e-118 397.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria 28221|Deltaproteobacteria T two component, sigma54 specific, transcriptional regulator, Fis family - - - ko:K02481 - - - - ko00000,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_3422915_1 717231.Flexsi_0787 2.516e-13 74.0 COG1734@1|root,COG1734@2|Bacteria,2GFP6@200930|Deferribacteres 200930|Deferribacteres K Prokaryotic dksA/traR C4-type zinc finger - - - ko:K06204 ko02026,map02026 - - - ko00000,ko00001,ko03000,ko03009,ko03021 - - - zf-dskA_traR DYD2_k127_3422915_0 1379698.RBG1_1C00001G0862 4.289e-195 635.0 COG4772@1|root,COG4772@2|Bacteria,2NRIP@2323|unclassified Bacteria 2|Bacteria P TonB dependent receptor fecA - - ko:K16091 - - - - ko00000,ko02000 1.B.14.1.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD2_k127_3422915_2 1121904.ARBP01000036_gene2110 6.95e-11 72.0 COG2227@1|root,COG2227@2|Bacteria,4NYQB@976|Bacteroidetes,47T2J@768503|Cytophagia 976|Bacteroidetes H Methionine biosynthesis protein MetW - - - - - - - - - - - - Methyltransf_23 DYD2_k127_3428046_0 1267534.KB906755_gene4695 3.86e-200 641.0 COG1629@1|root,COG4771@2|Bacteria,3Y33S@57723|Acidobacteria,2JK9M@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_3428046_1 234267.Acid_3614 4.545e-132 432.0 COG1060@1|root,COG1060@2|Bacteria,3Y2IA@57723|Acidobacteria 57723|Acidobacteria H Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) mqnC - 1.21.98.1 ko:K11784 ko00130,ko01110,map00130,map01110 - R08588 RC02329 ko00000,ko00001,ko01000 - - - Radical_SAM DYD2_k127_3428046_2 204669.Acid345_3342 1.521e-20 96.0 COG1427@1|root,COG1427@2|Bacteria,3Y3PU@57723|Acidobacteria,2JIWB@204432|Acidobacteriia 204432|Acidobacteriia S Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) mqnA - 4.2.1.151 ko:K11782 ko00130,ko01110,map00130,map01110 - R10666 RC03232 ko00000,ko00001,ko01000 - - - VitK2_biosynth DYD2_k127_3430574_1 204669.Acid345_3484 1.322e-99 331.0 COG0823@1|root,COG0823@2|Bacteria,3Y36H@57723|Acidobacteria 57723|Acidobacteria U WD40-like Beta Propeller Repeat - - - - - - - - - - - - PD40 DYD2_k127_3430574_2 234267.Acid_5351 8.741e-59 214.0 COG0682@1|root,COG0682@2|Bacteria,3Y4HT@57723|Acidobacteria 57723|Acidobacteria M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins lgt - - ko:K13292 - - - - ko00000,ko01000 - - - LGT DYD2_k127_3430574_3 283942.IL1127 5.046e-31 128.0 COG0597@1|root,COG0597@2|Bacteria,1RGV9@1224|Proteobacteria,1S60E@1236|Gammaproteobacteria,2QG5J@267893|Idiomarinaceae 1236|Gammaproteobacteria MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins lspA - 3.4.23.36 ko:K03101 ko03060,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_A8 DYD2_k127_3430574_0 338963.Pcar_2455 3.053e-188 603.0 COG0060@1|root,COG0060@2|Bacteria,1MVBQ@1224|Proteobacteria,42MKB@68525|delta/epsilon subdivisions,2WJ4W@28221|Deltaproteobacteria,43RZV@69541|Desulfuromonadales 28221|Deltaproteobacteria J tRNA synthetases class I (K) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1,zf-FPG_IleRS DYD2_k127_3440959_3 204669.Acid345_1902 3.644e-06 54.0 COG1314@1|root,COG1314@2|Bacteria,3Y56S@57723|Acidobacteria,2JJVA@204432|Acidobacteriia 204432|Acidobacteriia U Preprotein translocase SecG subunit - - - ko:K03075 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - SecG DYD2_k127_3440959_2 338966.Ppro_1695 2.15e-85 290.0 COG0149@1|root,COG0149@2|Bacteria,1MWK5@1224|Proteobacteria,42MIF@68525|delta/epsilon subdivisions,2WIQF@28221|Deltaproteobacteria,43T81@69541|Desulfuromonadales 28221|Deltaproteobacteria F Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) tpiA - 5.3.1.1 ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01015 RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - TIM DYD2_k127_3440959_0 1507.HMPREF0262_03480 5.945e-129 423.0 COG0126@1|root,COG0126@2|Bacteria,1TP3H@1239|Firmicutes,248VS@186801|Clostridia,36ETN@31979|Clostridiaceae 186801|Clostridia F Belongs to the phosphoglycerate kinase family pgk - 2.7.2.3,5.3.1.1 ko:K00927,ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01015,R01512 RC00002,RC00043,RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGK DYD2_k127_3440959_1 1120985.AUMI01000014_gene898 4.67e-103 338.0 COG0057@1|root,COG0057@2|Bacteria,1TNYU@1239|Firmicutes,4H298@909932|Negativicutes 909932|Negativicutes C Belongs to the glyceraldehyde-3-phosphate dehydrogenase family gap - 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N DYD2_k127_3444397_0 1128421.JAGA01000004_gene2493 1.761e-39 166.0 COG0308@1|root,COG0308@2|Bacteria,2NPPZ@2323|unclassified Bacteria 2|Bacteria E Peptidase family M1 domain pepN - - - - - - - - - - - Peptidase_M1 DYD2_k127_3444397_1 1232410.KI421422_gene2083 2.051e-25 113.0 2DMJE@1|root,32RYR@2|Bacteria,1N7PS@1224|Proteobacteria,42V1W@68525|delta/epsilon subdivisions,2WRWN@28221|Deltaproteobacteria,43UUQ@69541|Desulfuromonadales 28221|Deltaproteobacteria S Domain of unknown function (DUF4112) - - - - - - - - - - - - DUF4112 DYD2_k127_3444397_2 1283299.AUKG01000002_gene4588 1.832e-15 81.0 COG3320@1|root,COG3320@2|Bacteria,2GKZY@201174|Actinobacteria,4CPPS@84995|Rubrobacteria 84995|Rubrobacteria Q Male sterility protein - - - - - - - - - - - - NAD_binding_4 DYD2_k127_3457631_0 562970.Btus_2368 5.134e-142 458.0 COG0372@1|root,COG0372@2|Bacteria,1TPPS@1239|Firmicutes,4H9YE@91061|Bacilli,278TC@186823|Alicyclobacillaceae 91061|Bacilli C Citrate synthase, C-terminal domain citZ - 2.3.3.1 ko:K01647 ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00740 R00351 RC00004,RC00067 br01601,ko00000,ko00001,ko00002,ko01000 - - - Citrate_synt DYD2_k127_3457631_2 240015.ACP_2463 2.866e-33 142.0 COG1266@1|root,COG1266@2|Bacteria,3Y4ED@57723|Acidobacteria,2JJ3Q@204432|Acidobacteriia 204432|Acidobacteriia S CAAX protease self-immunity - - - ko:K07052 - - - - ko00000 - - - Abi DYD2_k127_3457631_1 204669.Acid345_1393 1.856e-111 388.0 COG5000@1|root,COG5000@2|Bacteria,3Y32D@57723|Acidobacteria,2JIN2@204432|Acidobacteriia 204432|Acidobacteriia T signal transduction histidine kinase - - - - - - - - - - - - HAMP,HATPase_c,HisKA,PAS_4,PAS_8 DYD2_k127_3459970_0 1174528.JH992893_gene5951 7.206e-295 934.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1JJIN@1189|Stigonemataceae 1117|Cyanobacteria Q AMP-binding enzyme - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,Methyltransf_12,Methyltransf_25,PP-binding,Thioesterase DYD2_k127_3459970_1 272134.KB731325_gene579 1.092e-43 164.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H7F4@1150|Oscillatoriales 1117|Cyanobacteria Q Amino acid adenylation domain protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,TPR_1,TPR_8,Thioesterase DYD2_k127_3467179_2 314278.NB231_13261 0.0001282 46.0 COG1872@1|root,COG1872@2|Bacteria 2|Bacteria I DUF167 yggU - - ko:K09131 - - - - ko00000 - - - DUF167 DYD2_k127_3467179_0 1267533.KB906735_gene4448 3.438e-208 683.0 COG0457@1|root,COG0515@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,3Y2YM@57723|Acidobacteria,2JKAC@204432|Acidobacteriia 204432|Acidobacteriia K serine threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase,TPR_17 DYD2_k127_3467179_1 204669.Acid345_2125 2.487e-82 278.0 COG0217@1|root,COG0217@2|Bacteria,3Y2UW@57723|Acidobacteria,2JIJW@204432|Acidobacteriia 204432|Acidobacteriia K transcriptional regulatory protein - - - - - - - - - - - - Transcrip_reg DYD2_k127_3470787_2 1267534.KB906759_gene2013 2.347e-36 149.0 COG0793@1|root,COG0793@2|Bacteria,3Y3A7@57723|Acidobacteria,2JHJK@204432|Acidobacteriia 204432|Acidobacteriia M tail specific protease - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 DYD2_k127_3470787_1 1267535.KB906767_gene1297 2.67e-40 164.0 COG2304@1|root,COG2304@2|Bacteria,3Y2PC@57723|Acidobacteria,2JI8N@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor, type A - - - - - - - - - - - - VWA,VWA_2 DYD2_k127_3470787_5 179408.Osc7112_4392 9.793e-14 76.0 COG2929@1|root,COG2929@2|Bacteria,1G7SJ@1117|Cyanobacteria,1HBG2@1150|Oscillatoriales 1117|Cyanobacteria S Ribonuclease toxin, BrnT, of type II toxin-antitoxin system - - - ko:K09803 - - - - ko00000 - - - BrnT_toxin DYD2_k127_3470787_3 65093.PCC7418_3181 1.491e-30 124.0 2CUP7@1|root,32SVQ@2|Bacteria,1G747@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_3470787_4 671143.DAMO_1216 5.69e-21 92.0 COG4799@1|root,COG4799@2|Bacteria,2NNWQ@2323|unclassified Bacteria 2|Bacteria I carboxyl transferase pccB - 2.1.3.15,6.4.1.3 ko:K01966 ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200 M00373,M00741 R01859 RC00097,RC00609 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans DYD2_k127_3470787_0 204669.Acid345_4697 9.037e-153 486.0 COG4799@1|root,COG4799@2|Bacteria,3Y3SM@57723|Acidobacteria,2JIBH@204432|Acidobacteriia 204432|Acidobacteriia I Carboxyl transferase domain - - 2.1.3.15,6.4.1.3 ko:K01966 ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200 M00373,M00741 R01859 RC00097,RC00609 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans DYD2_k127_3473442_5 32057.KB217478_gene4348 4.545e-05 51.0 COG0501@1|root,COG0501@2|Bacteria,1G4D1@1117|Cyanobacteria,1HJUG@1161|Nostocales 1117|Cyanobacteria O Peptidase family M48 - - - - - - - - - - - - Peptidase_M48 DYD2_k127_3473442_2 1089549.AZUQ01000001_gene242 3.011e-31 133.0 COG4899@1|root,COG4899@2|Bacteria,2IGN5@201174|Actinobacteria,4F00Y@85014|Glycomycetales 201174|Actinobacteria S Uncharacterized protein conserved in bacteria (DUF2199) - - - - - - - - - - - - DUF2199 DYD2_k127_3473442_0 1037409.BJ6T_23800 4.226e-136 435.0 COG1733@1|root,COG1733@2|Bacteria,1NEKW@1224|Proteobacteria,2U0MC@28211|Alphaproteobacteria,3JTRU@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria K HxlR-like helix-turn-helix - - - - - - - - - - - - HxlR,SCP2 DYD2_k127_3473442_3 1379698.RBG1_1C00001G0336 5.397e-20 100.0 COG5588@1|root,COG5588@2|Bacteria 2|Bacteria S Protein of unknown function (DUF1326) - - - - - - - - - - - - DUF1326 DYD2_k127_3473442_1 1042163.BRLA_c025150 4.696e-93 308.0 28H95@1|root,2Z7KY@2|Bacteria,1TQTR@1239|Firmicutes,4HB82@91061|Bacilli,26UCG@186822|Paenibacillaceae 91061|Bacilli S Protein of unknown function (DUF4256) - - - - - - - - - - - - DUF4256 DYD2_k127_3481958_5 536019.Mesop_1977 1.064e-14 88.0 COG0457@1|root,COG3629@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3629@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria 1224|Proteobacteria T Adenylate cyclase - - - - - - - - - - - - BTAD,TPR_16,TPR_8,Trans_reg_C DYD2_k127_3481958_1 1120973.AQXL01000130_gene1193 2.459e-111 395.0 COG1404@1|root,COG1404@2|Bacteria,1UZRQ@1239|Firmicutes,4HEVW@91061|Bacilli 91061|Bacilli O Subtilase family - - - ko:K17734 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S8,SLH DYD2_k127_3481958_2 1173263.Syn7502_01675 2.744e-81 278.0 COG0500@1|root,COG2226@2|Bacteria,1G24H@1117|Cyanobacteria,1H0C4@1129|Synechococcus 1117|Cyanobacteria H Methyltransferase domain - - - - - - - - - - - - Methyltransf_11 DYD2_k127_3481958_4 748280.NH8B_3720 5.904e-54 196.0 COG2717@1|root,COG2717@2|Bacteria,1RDUP@1224|Proteobacteria,2VRBQ@28216|Betaproteobacteria,2KRFH@206351|Neisseriales 206351|Neisseriales C Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain msrQ - - ko:K17247 - - - - ko00000 - - - Ferric_reduct DYD2_k127_3481958_0 204669.Acid345_1007 2.545e-129 421.0 COG2041@1|root,COG2041@2|Bacteria,3Y2X4@57723|Acidobacteria,2JHNI@204432|Acidobacteriia 204432|Acidobacteriia S Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide msrP - - ko:K07147 - - - - ko00000,ko01000 - - - Oxidored_molyb DYD2_k127_3481958_3 1005999.GLGR_3635 1.248e-80 279.0 COG0471@1|root,COG0471@2|Bacteria,1MUSA@1224|Proteobacteria,1RMF3@1236|Gammaproteobacteria 1236|Gammaproteobacteria P transporter - - - - - - - - - - - - Na_sulph_symp DYD2_k127_3486505_2 1173026.Glo7428_4872 4.576e-24 103.0 COG5573@1|root,COG5573@2|Bacteria,1G65P@1117|Cyanobacteria 1117|Cyanobacteria S PIN domain - - - - - - - - - - - - PIN DYD2_k127_3486505_4 909663.KI867150_gene1218 2.066e-06 54.0 COG4974@1|root,COG4974@2|Bacteria,1QV9T@1224|Proteobacteria,43BP3@68525|delta/epsilon subdivisions,2X70D@28221|Deltaproteobacteria,2MRF3@213462|Syntrophobacterales 28221|Deltaproteobacteria L Phage integrase SAM-like domain - - - - - - - - - - - - Phage_int_SAM_3,Phage_integrase DYD2_k127_3486505_3 1444712.BN1013_00784 1.408e-14 83.0 COG0582@1|root,COG0582@2|Bacteria,2JG7E@204428|Chlamydiae 204428|Chlamydiae L Phage integrase family - - - - - - - - - - - - Phage_integrase DYD2_k127_3486505_1 1380391.JIAS01000005_gene2392 2.48e-87 299.0 2CI8J@1|root,33VR2@2|Bacteria,1NW5W@1224|Proteobacteria,2USCC@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3486505_0 1380391.JIAS01000005_gene2393 2.165e-115 380.0 2DUXC@1|root,33SV4@2|Bacteria,1NRZC@1224|Proteobacteria,2UQYJ@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3487612_0 1380391.JIAS01000011_gene5122 1.028e-144 479.0 COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,2JR1T@204441|Rhodospirillales 204441|Rhodospirillales T Adenylyl- / guanylyl cyclase, catalytic domain - - - - - - - - - - - - Guanylate_cyc,TPR_19 DYD2_k127_3487612_2 477641.MODMU_4218 2.279e-12 72.0 COG4319@1|root,COG4319@2|Bacteria,2HA56@201174|Actinobacteria 201174|Actinobacteria S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 DYD2_k127_3487612_1 1380355.JNIJ01000109_gene5339 1.815e-19 96.0 COG3039@1|root,COG3039@2|Bacteria,1MUVI@1224|Proteobacteria,2TSA7@28211|Alphaproteobacteria,3JTRC@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L Transposase - - - - - - - - - - - - DDE_Tnp_1_6,DUF772 DYD2_k127_3490568_1 1340493.JNIF01000003_gene1851 2.427e-49 179.0 COG0342@1|root,COG0342@2|Bacteria,3Y37S@57723|Acidobacteria 57723|Acidobacteria U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD - - ko:K03072 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG DYD2_k127_3490568_0 682795.AciX8_4404 2.78e-70 250.0 COG0341@1|root,COG0341@2|Bacteria,3Y2ZT@57723|Acidobacteria,2JHZF@204432|Acidobacteriia 204432|Acidobacteriia U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secF - - ko:K03074 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG DYD2_k127_3501496_1 1040989.AWZU01000001_gene5816 2.757e-107 364.0 COG2159@1|root,COG2159@2|Bacteria,1Q4XY@1224|Proteobacteria,2U25S@28211|Alphaproteobacteria,3JUPG@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S Amidohydrolase - - - ko:K07045 - - - - ko00000 - - - Amidohydro_2 DYD2_k127_3501496_0 1206101.AZXC01000013_gene959 7.571e-141 473.0 COG1020@1|root,COG1020@2|Bacteria,2GM1X@201174|Actinobacteria 201174|Actinobacteria Q PFAM Lantibiotic dehydratase domain protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,Lant_dehydr_N,NAD_binding_4,PP-binding DYD2_k127_3508395_1 269799.Gmet_2718 1.566e-91 307.0 COG1262@1|root,COG1262@2|Bacteria,1NQ5K@1224|Proteobacteria,42T39@68525|delta/epsilon subdivisions,2WR3E@28221|Deltaproteobacteria 28221|Deltaproteobacteria KLT Sulfatase-modifying factor enzyme 1 - - - - - - - - - - - - FGE-sulfatase DYD2_k127_3508395_0 1056820.KB900681_gene2859 4.825e-167 533.0 COG3385@1|root,COG3385@2|Bacteria,1PMXF@1224|Proteobacteria,1RMHK@1236|Gammaproteobacteria 1236|Gammaproteobacteria L COG3385 FOG Transposase and inactivated derivatives - - - - - - - - - - - - DDE_Tnp_1,DUF4372 DYD2_k127_3514610_2 1267535.KB906767_gene814 9.426e-33 129.0 COG1415@1|root,COG1415@2|Bacteria,3Y6D2@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function (DUF763) - - - ko:K09003 - - - - ko00000 - - - DUF763 DYD2_k127_3514610_3 1122216.AUHW01000004_gene1661 1.074e-28 119.0 COG0736@1|root,COG0736@2|Bacteria,1VA0T@1239|Firmicutes,4H55G@909932|Negativicutes 909932|Negativicutes I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein acpS - 2.7.8.7 ko:K00997 ko00770,map00770 - R01625 RC00002 ko00000,ko00001,ko01000 - - - ACPS DYD2_k127_3514610_1 546271.Selsp_0850 1.882e-44 173.0 COG1496@1|root,COG1496@2|Bacteria,1TS34@1239|Firmicutes,4H26Q@909932|Negativicutes 909932|Negativicutes S Belongs to the multicopper oxidase YfiH RL5 family - - - ko:K05810 - - - - ko00000,ko01000 - - - Cu-oxidase_4 DYD2_k127_3514610_4 1047013.AQSP01000130_gene1847 3.924e-17 87.0 COG4232@1|root,COG4232@2|Bacteria,2NPKJ@2323|unclassified Bacteria 2|Bacteria CO Protein of unknown function, DUF255 dsbD - 1.8.1.8 ko:K04084 - - - - ko00000,ko01000,ko03110 5.A.1.1 - - DsbC,DsbD,Thioredoxin,Thioredoxin_2,Thioredoxin_7 DYD2_k127_3514610_0 234267.Acid_7200 5.901e-58 209.0 COG0820@1|root,COG0820@2|Bacteria,3Y3HQ@57723|Acidobacteria 57723|Acidobacteria J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs rlmN - 2.1.1.192 ko:K06941 - - - - ko00000,ko01000,ko03009 - - - Fer4_14,Radical_SAM DYD2_k127_3517015_1 926551.KB900704_gene699 2.355e-41 162.0 COG3391@1|root,COG4935@1|root,COG3391@2|Bacteria,COG4935@2|Bacteria,4NEN7@976|Bacteroidetes,1HWMS@117743|Flavobacteriia,1ER48@1016|Capnocytophaga 976|Bacteroidetes O Thrombospondin type 3 - - - - - - - - - - - - CHU_C,P_proprotein,Reprolysin_4,TSP_3 DYD2_k127_3517015_5 637389.Acaty_c0237 0.0006895 47.0 COG4118@1|root,COG4118@2|Bacteria,1N4C8@1224|Proteobacteria,1S921@1236|Gammaproteobacteria,2NDYG@225057|Acidithiobacillales 225057|Acidithiobacillales D Antitoxin component of a toxin-antitoxin (TA) module - - - - - - - - - - - - PhdYeFM_antitox DYD2_k127_3517015_4 1449357.JQLK01000005_gene2381 2.415e-07 58.0 COG1848@1|root,COG1848@2|Bacteria,1WKM8@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S PIN domain - - - - - - - - - - - - PIN DYD2_k127_3517015_2 1173022.Cri9333_4073 1.044e-36 142.0 COG4634@1|root,COG4634@2|Bacteria,1G8GS@1117|Cyanobacteria,1HCSC@1150|Oscillatoriales 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_3517015_3 211165.AJLN01000098_gene5105 1.313e-34 133.0 COG2442@1|root,COG2442@2|Bacteria,1G869@1117|Cyanobacteria,1JMCI@1189|Stigonemataceae 1117|Cyanobacteria S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_3517015_0 640512.BC1003_4163 2.675e-53 195.0 COG3576@1|root,COG3576@2|Bacteria,1MWG9@1224|Proteobacteria,2VQ6P@28216|Betaproteobacteria,1K2NS@119060|Burkholderiaceae 28216|Betaproteobacteria S Pyridoxamine 5'-phosphate - - - ko:K07006 - - - - ko00000 - - - Putative_PNPOx DYD2_k127_3517667_1 1485544.JQKP01000003_gene201 2.853e-07 55.0 COG0861@1|root,COG0861@2|Bacteria,1MUNR@1224|Proteobacteria,2VJB9@28216|Betaproteobacteria 28216|Betaproteobacteria P membrane protein, terc alx - - ko:K05794 - - - - ko00000 - - - TerC DYD2_k127_3517667_0 204669.Acid345_2765 8.712e-40 169.0 COG0760@1|root,COG0760@2|Bacteria,3Y3BW@57723|Acidobacteria,2JIP1@204432|Acidobacteriia 204432|Acidobacteriia O Peptidylprolyl isomerase - - 5.2.1.8 ko:K03770 - - - - ko00000,ko01000,ko03110 - - - Rotamase_2,Rotamase_3,SurA_N_3 DYD2_k127_3525348_0 671143.DAMO_0765 1.408e-45 176.0 COG0666@1|root,COG0666@2|Bacteria,2NPRI@2323|unclassified Bacteria 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - - ko:K21440 - - - - ko00000,ko04131 - - - Ank,Ank_2,Ank_4,Ank_5 DYD2_k127_3525348_1 247490.KSU1_C0721 3.263e-12 75.0 COG0457@1|root,COG0457@2|Bacteria 247490.KSU1_C0721|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_352804_0 1287276.X752_29465 1.22e-48 192.0 COG0457@1|root,COG2197@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2197@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2UQ9J@28211|Alphaproteobacteria 28211|Alphaproteobacteria K helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,TPR_16 DYD2_k127_352804_2 1218076.BAYB01000028_gene4631 6.752e-16 91.0 COG3710@1|root,COG3899@1|root,COG3710@2|Bacteria,COG3899@2|Bacteria,1QTZ6@1224|Proteobacteria,2VNTP@28216|Betaproteobacteria,1K147@119060|Burkholderiaceae 28216|Betaproteobacteria K Transcriptional regulator - - - - - - - - - - - - AAA_16,Trans_reg_C DYD2_k127_352804_1 744979.R2A130_0552 2.928e-36 145.0 COG4597@1|root,COG4597@2|Bacteria,1MV0S@1224|Proteobacteria,2TR7G@28211|Alphaproteobacteria 28211|Alphaproteobacteria P ABC-type amino acid transport system permease component bztB GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K09970 ko02010,map02010 M00232 - - ko00000,ko00001,ko00002,ko02000 3.A.1.3.18,3.A.1.3.7,3.A.1.3.8 - - BPD_transp_1 DYD2_k127_3530359_2 189753.AXAS01000041_gene2534 5.64e-43 165.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3530359_1 189753.AXAS01000041_gene2534 1.022e-76 268.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3530359_0 909663.KI867150_gene2871 7.85e-143 467.0 COG3039@1|root,COG3039@2|Bacteria,1QY2X@1224|Proteobacteria 1224|Proteobacteria L Transposase DDE domain - - - - - - - - - - - - DDE_Tnp_1_6 DYD2_k127_3530359_3 189753.AXAS01000041_gene2534 1.124e-30 123.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3535395_3 234267.Acid_5783 2.059e-65 226.0 COG1032@1|root,COG1032@2|Bacteria 2|Bacteria C radical SAM domain protein - - - - - - - - - - - - Radical_SAM DYD2_k127_3535395_2 414996.IL38_07585 2.252e-107 365.0 COG3211@1|root,COG3211@2|Bacteria,2GJKE@201174|Actinobacteria,409RH@622450|Actinopolysporales 201174|Actinobacteria S Bacterial protein of unknown function (DUF839) - - - ko:K07093 - - - - ko00000 - - - DUF839 DYD2_k127_3535395_0 204669.Acid345_1627 1.433e-211 668.0 COG0477@1|root,COG0477@2|Bacteria,3Y4JA@57723|Acidobacteria,2JJBX@204432|Acidobacteriia 204432|Acidobacteriia EGP Sugar (and other) transporter - - - - - - - - - - - - Sugar_tr DYD2_k127_3535395_4 472759.Nhal_1435 2.51e-58 206.0 COG2193@1|root,COG2193@2|Bacteria,1RF3C@1224|Proteobacteria,1S72I@1236|Gammaproteobacteria 1236|Gammaproteobacteria P Ferritin-like domain - - 1.16.3.1 ko:K03594 ko00860,map00860 - R00078 RC02758 ko00000,ko00001,ko01000 - - - Ferritin DYD2_k127_3535395_1 1297742.A176_07059 3.841e-148 483.0 COG0457@1|root,COG0457@2|Bacteria,1NTKG@1224|Proteobacteria 1224|Proteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_3539219_2 63737.Npun_R3421 2.649e-24 107.0 COG0666@1|root,COG0666@2|Bacteria,1GIBD@1117|Cyanobacteria,1HTG3@1161|Nostocales 1117|Cyanobacteria S response to abiotic stimulus - - - - - - - - - - - - - DYD2_k127_3539219_0 1082933.MEA186_06086 5.515e-114 389.0 COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,1R20U@1224|Proteobacteria,2U3F2@28211|Alphaproteobacteria 28211|Alphaproteobacteria K Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_19,TPR_6 DYD2_k127_3539219_1 909663.KI867151_gene3093 1.674e-78 273.0 COG2204@1|root,COG2204@2|Bacteria,1NH9G@1224|Proteobacteria,42ZAJ@68525|delta/epsilon subdivisions,2WU3D@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8,Sigma54_activat DYD2_k127_354384_1 398527.Bphyt_4619 2.162e-50 190.0 COG2064@1|root,COG2064@2|Bacteria,1MWAZ@1224|Proteobacteria,2VIA4@28216|Betaproteobacteria,1K07H@119060|Burkholderiaceae 28216|Betaproteobacteria NU Type II secretion system tadC - - ko:K12511 - - - - ko00000,ko02044 - - - T2SSF DYD2_k127_354384_4 1415779.JOMH01000001_gene197 1.19e-06 60.0 COG0457@1|root,COG0457@2|Bacteria,1RHVD@1224|Proteobacteria,1SBDQ@1236|Gammaproteobacteria,1X80P@135614|Xanthomonadales 135614|Xanthomonadales S flp pilus assembly protein - - - - - - - - - - - - TPR_19 DYD2_k127_354384_0 309801.trd_0219 2.062e-101 345.0 COG0464@1|root,COG0464@2|Bacteria,2G642@200795|Chloroflexi,27XW8@189775|Thermomicrobia 189775|Thermomicrobia O ATPases associated with a variety of cellular activities - - - - - - - - - - - - - DYD2_k127_354384_2 279010.BL03345 5.273e-36 151.0 COG0741@1|root,COG0741@2|Bacteria,1V6DD@1239|Firmicutes,4HIWA@91061|Bacilli,1ZH33@1386|Bacillus 91061|Bacilli M COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) yjbJ - - - - - - - - - - - SLT DYD2_k127_354384_5 278963.ATWD01000001_gene4322 0.00026 51.0 2EBPI@1|root,2ZST6@2|Bacteria,3Y4NS@57723|Acidobacteria,2JJ73@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_354384_3 1267533.KB906734_gene4231 7.9e-27 124.0 COG2304@1|root,COG2304@2|Bacteria,3Y30G@57723|Acidobacteria,2JIK2@204432|Acidobacteriia 204432|Acidobacteriia S PFAM von Willebrand factor type A - - - - - - - - - - - - VWA,VWA_2,VWA_3 DYD2_k127_3551288_1 450851.PHZ_c3523 3.956e-60 219.0 COG3677@1|root,COG3677@2|Bacteria,1MXYX@1224|Proteobacteria,2TQR3@28211|Alphaproteobacteria,2KHRA@204458|Caulobacterales 204458|Caulobacterales L ISXO2-like transposase domain - - - - - - - - - - - - DDE_Tnp_IS1595,Zn_Tnp_IS1595 DYD2_k127_3551288_3 234267.Acid_0229 1.269e-36 154.0 COG2890@1|root,COG2890@2|Bacteria,3Y8Q3@57723|Acidobacteria 57723|Acidobacteria J Pfam:Methyltransf_26 - - - - - - - - - - - - - DYD2_k127_3551288_0 99598.Cal7507_5295 4.066e-135 440.0 COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,1G1R7@1117|Cyanobacteria 1117|Cyanobacteria M Belongs to the SIS family. GutQ KpsF subfamily kpsF - 5.3.1.13 ko:K06041 ko00540,ko01100,map00540,map01100 M00063 R01530 RC00541 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CBS,SIS DYD2_k127_3551288_2 1108045.GORHZ_109_00020 6.363e-37 155.0 COG3464@1|root,COG3464@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - UPF0236 DYD2_k127_3551288_4 1229780.BN381_750002 1.564e-08 61.0 2C62F@1|root,335K1@2|Bacteria,2GS5K@201174|Actinobacteria 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_3563741_3 522306.CAP2UW1_3234 1.956e-07 54.0 COG1943@1|root,COG1943@2|Bacteria,1MX0E@1224|Proteobacteria,2VKGR@28216|Betaproteobacteria 1224|Proteobacteria L Transposase IS200 like - - - ko:K07491 - - - - ko00000 - - - Y1_Tnp DYD2_k127_3563741_2 1078020.KEK_00640 6.867e-24 106.0 2E7BU@1|root,331V4@2|Bacteria,2GQ2K@201174|Actinobacteria,23DX1@1762|Mycobacteriaceae 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_3563741_0 767817.Desgi_0221 1.359e-53 201.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - - - - - - - - - - - Dimerisation2,Methyltransf_2 DYD2_k127_3563741_1 1137799.GZ78_23200 5.85e-24 106.0 COG4974@1|root,COG4974@2|Bacteria,1MVAN@1224|Proteobacteria,1RMSS@1236|Gammaproteobacteria,1XJGS@135619|Oceanospirillales 135619|Oceanospirillales L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_int_SAM_4,Phage_integrase DYD2_k127_3563741_4 237368.SCABRO_02689 6.997e-05 49.0 COG4974@1|root,COG4974@2|Bacteria,2IZG8@203682|Planctomycetes 203682|Planctomycetes L Phage integrase, N-terminal SAM-like domain - - - - - - - - - - - - Phage_int_SAM_4,Phage_integrase DYD2_k127_3568024_1 402777.KB235898_gene5758 6.205e-14 85.0 COG0666@1|root,COG0666@2|Bacteria,1G0E1@1117|Cyanobacteria,1H7BV@1150|Oscillatoriales 1117|Cyanobacteria S COG0666 FOG Ankyrin repeat - - - - - - - - - - - - Ank,Ank_2,Ank_3,Ank_4,Ank_5 DYD2_k127_3572809_2 204669.Acid345_2638 5.275e-32 127.0 COG1196@1|root,COG1196@2|Bacteria,3Y2W1@57723|Acidobacteria,2JHJF@204432|Acidobacteriia 204432|Acidobacteriia D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N,SMC_hinge DYD2_k127_3572809_1 269797.Mbar_A0497 3.027e-41 172.0 COG4745@1|root,arCOG00562@2157|Archaea,2XUNV@28890|Euryarchaeota,2NAWY@224756|Methanomicrobia 224756|Methanomicrobia M PFAM glycosyl transferase family 39 - - - - - - - - - - - - PMT_2 DYD2_k127_3572809_0 525904.Tter_0360 3.232e-48 196.0 COG5427@1|root,COG5427@2|Bacteria 2|Bacteria M chaperone-mediated protein folding - - - - - - - - - - - - - DYD2_k127_3586520_0 686340.Metal_1923 1.172e-60 216.0 COG0457@1|root,COG0457@2|Bacteria 686340.Metal_1923|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_3586520_1 765910.MARPU_08275 0.0005772 49.0 COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,1RN2T@1236|Gammaproteobacteria,1WXMD@135613|Chromatiales 135613|Chromatiales GM pfam abc - - - ko:K01990,ko:K09691 ko02010,map02010 M00250,M00254 - - ko00000,ko00001,ko00002,ko02000 3.A.1,3.A.1.103 - - ABC_tran,Wzt_C DYD2_k127_3590512_3 373903.Hore_14640 9.464e-13 71.0 COG0330@1|root,COG0330@2|Bacteria,1W711@1239|Firmicutes,25IRK@186801|Clostridia,3WC5Y@53433|Halanaerobiales 186801|Clostridia O prohibitin homologues - - - - - - - - - - - - Band_7 DYD2_k127_3590512_1 370438.PTH_0904 5.039e-32 133.0 COG1514@1|root,COG1514@2|Bacteria,1VEU2@1239|Firmicutes,24MTR@186801|Clostridia,262QN@186807|Peptococcaceae 186801|Clostridia J Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester ligT - 3.1.4.58 ko:K01975 - - - - ko00000,ko01000,ko03016 - - - LigT_PEase DYD2_k127_3590512_0 237368.SCABRO_02963 3.535e-47 182.0 COG3375@1|root,COG3375@2|Bacteria,2J14I@203682|Planctomycetes 203682|Planctomycetes M carboxylic acid catabolic process - - - - - - - - - - - - - DYD2_k127_3590512_2 1187851.A33M_3742 6.816e-22 100.0 COG0784@1|root,COG0784@2|Bacteria,1QU3I@1224|Proteobacteria 1224|Proteobacteria T response regulator - - - - - - - - - - - - Hpt,PAS_8,Response_reg DYD2_k127_3597265_0 591159.ACEZ01000045_gene2936 6.951e-62 221.0 COG3208@1|root,COG3208@2|Bacteria,2IEPI@201174|Actinobacteria 201174|Actinobacteria Q Thioesterase involved in non-ribosomal peptide biosynthesis - - 3.1.2.21 ko:K01071 ko00061,ko01100,map00061,map01100 - R04014,R08157,R08158 RC00014,RC00039 ko00000,ko00001,ko01000,ko01004 - - - Thioesterase DYD2_k127_3597265_1 1268068.PG5_16110 5.613e-22 102.0 COG0535@1|root,COG0535@2|Bacteria 2|Bacteria I radical SAM domain protein - - - - - - - - - - - - Fer4_12,Fer4_14,Radical_SAM,SPASM DYD2_k127_3597265_2 483219.LILAB_30110 2.566e-15 77.0 COG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria,42NH4@68525|delta/epsilon subdivisions,2WN7A@28221|Deltaproteobacteria,2YTZA@29|Myxococcales 28221|Deltaproteobacteria Q non-ribosomal peptide synthetase - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,TauD,Thioesterase,ketoacyl-synt DYD2_k127_3605669_0 1123242.JH636434_gene5497 2.318e-216 691.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,2IXK8@203682|Planctomycetes 203682|Planctomycetes E Prolyl oligopeptidase family - - - - - - - - - - - - PD40,Peptidase_S9 DYD2_k127_3605669_1 1121468.AUBR01000022_gene2771 1.183e-40 161.0 COG2199@1|root,COG3706@2|Bacteria,1VADD@1239|Firmicutes,25E7Q@186801|Clostridia,42J5P@68295|Thermoanaerobacterales 186801|Clostridia T TIGRFAM Diguanylate cyclase - - 2.7.7.65 ko:K21022 ko02025,map02025 - - - ko00000,ko00001,ko01000 - - - GGDEF,PAS_9,Response_reg,TPR_8 DYD2_k127_3616336_3 1246626.BleG1_3504 6.473e-13 69.0 2EFZF@1|root,339RM@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_3616336_1 234267.Acid_4617 1.034e-56 211.0 COG0457@1|root,COG0457@2|Bacteria,3Y4T0@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function (DUF2911) - - - - - - - - - - - - DUF2911 DYD2_k127_3616336_0 204669.Acid345_3751 3.691e-58 215.0 COG3547@1|root,COG3547@2|Bacteria,3Y5SI@57723|Acidobacteria,2JNJP@204432|Acidobacteriia 57723|Acidobacteria L Transposase IS116/IS110/IS902 family - - - - - - - - - - - - DEDD_Tnp_IS110,Transposase_20 DYD2_k127_3616336_2 671143.DAMO_1661 8.631e-46 170.0 COG1858@1|root,COG1858@2|Bacteria 2|Bacteria C electron transfer activity mauG GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.11.1.5 ko:K00428 - - - - ko00000,ko01000 - - - CCP_MauG,Cytochrom_C DYD2_k127_3621011_2 1121920.AUAU01000022_gene2473 4.523e-21 98.0 COG3411@1|root,COG3411@2|Bacteria,3Y54Q@57723|Acidobacteria 57723|Acidobacteria C Ferredoxin - - - - - - - - - - - - - DYD2_k127_3621011_1 999541.bgla_2g10450 9.558e-31 130.0 2DR9C@1|root,33AS0@2|Bacteria,1NJ0U@1224|Proteobacteria,2VYD2@28216|Betaproteobacteria,1KAKY@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3621011_0 247490.KSU1_C1649 9.498e-34 148.0 COG0265@1|root,COG1716@1|root,COG0265@2|Bacteria,COG1716@2|Bacteria,2J23K@203682|Planctomycetes 203682|Planctomycetes OT Forkhead associated domain - - - - - - - - - - - - FHA,Trypsin_2 DYD2_k127_3626911_1 204669.Acid345_0446 1.036e-47 186.0 COG0457@1|root,COG0457@2|Bacteria,3Y4E6@57723|Acidobacteria,2JM2V@204432|Acidobacteriia 204432|Acidobacteriia S TPR repeat - - - - - - - - - - - - TPR_16,TPR_2,TPR_8 DYD2_k127_3626911_0 717605.Theco_1624 3.355e-76 270.0 COG1820@1|root,COG1820@2|Bacteria,1TPFK@1239|Firmicutes,4HC6C@91061|Bacilli,26RVP@186822|Paenibacillaceae 91061|Bacilli G Belongs to the metallo-dependent hydrolases superfamily. NagA family - - 3.5.1.25 ko:K01443 ko00520,ko01130,map00520,map01130 - R02059 RC00166,RC00300 ko00000,ko00001,ko01000 - - - Amidohydro_1 DYD2_k127_3636256_2 156578.ATW7_04312 6.266e-38 149.0 COG0642@1|root,COG0642@2|Bacteria,1NXDJ@1224|Proteobacteria 1224|Proteobacteria T Histidine kinase - - - - - - - - - - - - 7TMR-DISMED2,7TMR-DISM_7TM,HAMP,HATPase_c,HisKA,Hpt,Response_reg,dCache_1 DYD2_k127_3636256_1 1231391.AMZF01000094_gene113 1.058e-155 506.0 COG4819@1|root,COG4819@2|Bacteria,1PPGT@1224|Proteobacteria 1224|Proteobacteria E ethanolamine utilization protein eutA GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0030091,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050790,GO:0051339,GO:0051349,GO:0065007,GO:0065009,GO:0071704,GO:1901564 - ko:K04019 ko00564,ko01100,map00564,map01100 - R00749 RC00370 ko00000,ko00001 - - - EutA DYD2_k127_3639048_5 402626.Rpic_2855 3.874e-09 63.0 COG4235@1|root,COG4235@2|Bacteria,1MY4J@1224|Proteobacteria,2VQ05@28216|Betaproteobacteria,1K8SG@119060|Burkholderiaceae 28216|Betaproteobacteria O Cytochrome c-type biogenesis protein cycH - - ko:K02200 - - - - ko00000 - - - TPR_16,TPR_2 DYD2_k127_3639048_4 1266925.JHVX01000001_gene2486 8.797e-41 162.0 COG3088@1|root,COG3088@2|Bacteria,1MZZ5@1224|Proteobacteria,2VU7C@28216|Betaproteobacteria,37311@32003|Nitrosomonadales 28216|Betaproteobacteria P subunit of a heme lyase ccmH - - ko:K02200 - - - - ko00000 - - - CcmH DYD2_k127_3639048_2 323848.Nmul_A1208 3.839e-72 246.0 COG0526@1|root,COG0526@2|Bacteria,1RI3N@1224|Proteobacteria,2VR8D@28216|Betaproteobacteria,372UU@32003|Nitrosomonadales 28216|Betaproteobacteria CO oxidoreductase DsbE dsbE - - ko:K02199 - - - - ko00000,ko03110 - - - AhpC-TSA,Redoxin DYD2_k127_3639048_0 1131553.JIBI01000009_gene1231 4.628e-316 979.0 COG1138@1|root,COG1138@2|Bacteria,1MUQS@1224|Proteobacteria,2VHUE@28216|Betaproteobacteria,3725U@32003|Nitrosomonadales 28216|Betaproteobacteria O Cytochrome c-type biogenesis protein CcmF ccmF - - ko:K02198 - - - - ko00000,ko02000 9.B.14.1 - - CcmF_C,Cytochrom_C_asm DYD2_k127_3639048_3 1288494.EBAPG3_12780 1.695e-62 218.0 COG2332@1|root,COG2332@2|Bacteria,1RHN5@1224|Proteobacteria,2VRKZ@28216|Betaproteobacteria,3731F@32003|Nitrosomonadales 28216|Betaproteobacteria O Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH ccmE - - ko:K02197 - - - - ko00000 - - - CcmE DYD2_k127_3639048_6 153948.NAL212_1560 4.258e-09 59.0 COG3114@1|root,COG3114@2|Bacteria,1NGBM@1224|Proteobacteria,2VY1Y@28216|Betaproteobacteria,373N5@32003|Nitrosomonadales 28216|Betaproteobacteria U Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes - - - ko:K02196 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1.107 - - CcmD DYD2_k127_3639048_1 1266925.JHVX01000001_gene2490 6.399e-109 357.0 COG0755@1|root,COG0755@2|Bacteria,1MU61@1224|Proteobacteria,2VHF8@28216|Betaproteobacteria,3729C@32003|Nitrosomonadales 28216|Betaproteobacteria U Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes ccmC - - ko:K02195 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - Cytochrom_C_asm DYD2_k127_3639452_1 1380394.JADL01000004_gene5881 2.722e-21 95.0 COG2114@1|root,COG2114@2|Bacteria,1QTFI@1224|Proteobacteria,2TRNP@28211|Alphaproteobacteria,2JQC8@204441|Rhodospirillales 204441|Rhodospirillales T Adenylyl- / guanylyl cyclase, catalytic domain - - - - - - - - - - - - Guanylate_cyc DYD2_k127_3639452_0 1082931.KKY_2539 5.077e-47 180.0 COG3384@1|root,COG3384@2|Bacteria,1MW77@1224|Proteobacteria,2TRP1@28211|Alphaproteobacteria,3N93B@45401|Hyphomicrobiaceae 28211|Alphaproteobacteria S Catalytic LigB subunit of aromatic ring-opening dioxygenase - - 1.13.11.16,1.13.11.8 ko:K04101,ko:K05713 ko00360,ko00362,ko00624,ko00627,ko01120,ko01220,map00360,map00362,map00624,map00627,map01120,map01220 M00545 R01632,R03550,R04280,R04376,R06788,R09565 RC00233,RC00387,RC00535,RC01140,RC01364,RC02567,RC02694 br01602,ko00000,ko00001,ko00002,ko01000 - - - LigB DYD2_k127_3639452_2 1205680.CAKO01000002_gene3085 3.463e-07 54.0 2DPNC@1|root,32UMG@2|Bacteria,1N0XW@1224|Proteobacteria,2UVTT@28211|Alphaproteobacteria 28211|Alphaproteobacteria Q Aromatic-ring-opening dioxygenase LigAB, LigA subunit - - - - - - - - - - - - LigA DYD2_k127_3646255_0 443598.AUFA01000002_gene2563 3.625e-97 332.0 COG2203@1|root,COG4191@1|root,COG5002@1|root,COG2203@2|Bacteria,COG4191@2|Bacteria,COG5002@2|Bacteria,1RCM9@1224|Proteobacteria,2TTJ0@28211|Alphaproteobacteria,3K6MV@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria T Cache domain - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,dCache_1 DYD2_k127_3646255_2 1121324.CLIT_14c00700 1.774e-22 113.0 COG2984@1|root,COG2984@2|Bacteria,1TPB0@1239|Firmicutes,248X3@186801|Clostridia 186801|Clostridia S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3646255_1 189753.AXAS01000041_gene2534 2.006e-84 290.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3646732_0 448385.sce0078 1.14e-322 1024.0 COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,42NKH@68525|delta/epsilon subdivisions,2WJTY@28221|Deltaproteobacteria,2YUG5@29|Myxococcales 28221|Deltaproteobacteria L UvrD/REP helicase N-terminal domain - - - - - - - - - - - - PDDEXK_1,UvrD-helicase,UvrD_C DYD2_k127_3646732_1 448385.sce0197 1.011e-277 890.0 COG3857@1|root,COG3857@2|Bacteria 2|Bacteria L exonuclease activity addB - 3.6.4.12 ko:K16899 - - - - ko00000,ko01000,ko03400 - - - Exonuc_V_gamma,PDDEXK_1,UvrD_C DYD2_k127_3646732_2 521045.Kole_1016 1.592e-22 102.0 COG0784@1|root,COG0784@2|Bacteria 2|Bacteria T Response regulator, receiver divK - - ko:K11443 ko02020,ko04112,map02020,map04112 M00511 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg DYD2_k127_3651937_2 316067.Geob_2965 1.926e-05 51.0 COG0438@1|root,COG0438@2|Bacteria,1MU9C@1224|Proteobacteria,42T55@68525|delta/epsilon subdivisions,2WPW2@28221|Deltaproteobacteria 28221|Deltaproteobacteria M PFAM Glycosyl transferase, group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_3651937_0 404380.Gbem_3444 1.603e-106 361.0 COG2006@1|root,COG2006@2|Bacteria,1NS70@1224|Proteobacteria,42Y7Z@68525|delta/epsilon subdivisions,2WTXR@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Domain of unknown function (DUF362) - - - - - - - - - - - - DUF362 DYD2_k127_3651937_1 1123393.KB891330_gene806 3.836e-31 134.0 COG1541@1|root,COG1541@2|Bacteria,1MV1W@1224|Proteobacteria,2VMX6@28216|Betaproteobacteria,1KS51@119069|Hydrogenophilales 119069|Hydrogenophilales H Capsular polysaccharide biosynthesis protein CapK - - - - - - - - - - - - - DYD2_k127_3652287_4 1499967.BAYZ01000105_gene3512 5.114e-42 157.0 COG0714@1|root,COG0714@2|Bacteria,2NNMQ@2323|unclassified Bacteria 2|Bacteria S ATPase associated with various cellular - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 DYD2_k127_3652287_9 309799.DICTH_0725 0.0005736 49.0 COG4968@1|root,COG4968@2|Bacteria 2|Bacteria NU Prokaryotic N-terminal methylation motif - - - ko:K02456,ko:K02650 ko02020,ko03070,ko05111,map02020,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - Lectin_C,N_methyl,SBP_bac_10,T2SSG DYD2_k127_3652287_8 397278.JOJN01000017_gene2520 5.906e-05 52.0 2EBIV@1|root,335JA@2|Bacteria,2IHZS@201174|Actinobacteria,4DRF2@85009|Propionibacteriales 201174|Actinobacteria - - - - - - - - - - - - - - NfeD DYD2_k127_3652287_0 309801.trd_A0425 1.512e-118 400.0 COG2268@1|root,COG2268@2|Bacteria,2GBEI@200795|Chloroflexi,27Z5S@189775|Thermomicrobia 189775|Thermomicrobia S Flotillin - - - ko:K07192 ko04910,map04910 - - - ko00000,ko00001,ko03036,ko04131,ko04147 - - - Band_7,Flot DYD2_k127_3652287_7 742159.HMPREF0004_3209 9.598e-06 49.0 COG1633@1|root,COG1633@2|Bacteria,1RB01@1224|Proteobacteria,2VQJI@28216|Betaproteobacteria,3T3JX@506|Alcaligenaceae 28216|Betaproteobacteria S Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - - - - - - - - - - DUF892 DYD2_k127_3652287_5 795666.MW7_1939 1.734e-31 124.0 COG1633@1|root,COG1633@2|Bacteria,1RB01@1224|Proteobacteria,2VQJI@28216|Betaproteobacteria,1K7GH@119060|Burkholderiaceae 28216|Betaproteobacteria S Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - - - - - - - - - - DUF892 DYD2_k127_3652287_1 1095769.CAHF01000010_gene1357 5.941e-115 379.0 COG4221@1|root,COG4221@2|Bacteria,1MUU6@1224|Proteobacteria,2VM6H@28216|Betaproteobacteria,475PA@75682|Oxalobacteraceae 28216|Betaproteobacteria S KR domain - - - - - - - - - - - - adh_short DYD2_k127_3652287_3 234267.Acid_0694 1.034e-51 187.0 COG3118@1|root,COG3118@2|Bacteria 2|Bacteria O belongs to the thioredoxin family - GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.8.1.8 ko:K03671,ko:K03672 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko01000,ko03110 - - - Thioredoxin DYD2_k127_3652287_2 1382359.JIAL01000001_gene350 2.611e-114 379.0 COG0517@1|root,COG1994@1|root,COG0517@2|Bacteria,COG1994@2|Bacteria 2|Bacteria S metallopeptidase activity rip3 GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016021,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0031224,GO:0031226,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 - ko:K06212,ko:K06402 - - - - ko00000,ko01000,ko01002,ko02000 1.A.16.1.1,1.A.16.1.3 - - CBS,Form_Nir_trans,Peptidase_M50,Peptidase_M50B DYD2_k127_3652287_6 1267535.KB906767_gene3098 3.822e-26 113.0 COG2823@1|root,COG2823@2|Bacteria,3Y4KR@57723|Acidobacteria,2JJBS@204432|Acidobacteriia 57723|Acidobacteria S BON domain - - - - - - - - - - - - BON DYD2_k127_3654832_3 1267533.KB906734_gene3807 1.127e-19 91.0 2D663@1|root,32M2Q@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_3654832_1 247490.KSU1_B0116 4.125e-35 138.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - - DYD2_k127_3654832_2 1089551.KE386572_gene908 5.405e-26 112.0 COG1999@1|root,COG1999@2|Bacteria,1R725@1224|Proteobacteria 1224|Proteobacteria C SCO1 SenC - - - ko:K07152 - - - - ko00000,ko03029 - - - SCO1-SenC DYD2_k127_3654832_4 661478.OP10G_0424 0.000488 48.0 COG0845@1|root,COG4633@1|root,COG0845@2|Bacteria,COG4633@2|Bacteria 2|Bacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family silP - 1.9.3.1,3.6.3.54 ko:K02275,ko:K17686 ko00190,ko01100,ko01524,ko04016,map00190,map01100,map01524,map04016 M00155 R00081,R00086 RC00002,RC00016 ko00000,ko00001,ko00002,ko01000 3.A.3.5,3.D.4.2,3.D.4.4,3.D.4.6 - - Cupredoxin_1,DsbD_2,HMA DYD2_k127_3654832_0 443143.GM18_2076 5.591e-131 425.0 COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,42NCZ@68525|delta/epsilon subdivisions,2WK3X@28221|Deltaproteobacteria,43U5D@69541|Desulfuromonadales 28221|Deltaproteobacteria P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K07787 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4 - iAF987.Gmet_1547 ACR_tran DYD2_k127_3656537_7 1166018.FAES_3194 5.173e-14 75.0 COG0642@1|root,COG0840@1|root,COG1352@1|root,COG2201@1|root,COG2203@1|root,COG0642@2|Bacteria,COG0840@2|Bacteria,COG1352@2|Bacteria,COG2201@2|Bacteria,COG2203@2|Bacteria,4PKNJ@976|Bacteroidetes,47JHY@768503|Cytophagia 976|Bacteroidetes NT protein-glutamate methylesterase - - 2.1.1.80,3.1.1.61 ko:K00575,ko:K13924 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - CheB_methylest,CheR,CheR_N,GAF_2,HATPase_c,HisKA,PAS,PAS_10,PAS_3,PAS_4,PAS_8,PAS_9 DYD2_k127_3656537_5 246199.CUS_6096 2.123e-18 91.0 COG0745@1|root,COG0745@2|Bacteria,1V1RY@1239|Firmicutes,25B9C@186801|Clostridia,3WS51@541000|Ruminococcaceae 186801|Clostridia K Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C DYD2_k127_3656537_3 1123368.AUIS01000005_gene456 2.108e-29 125.0 COG2823@1|root,COG2823@2|Bacteria 2|Bacteria S hyperosmotic response mcsS - - - - - - - - - - - BON,MS_channel,Polyketide_cyc DYD2_k127_3656537_0 215803.DB30_5220 2.56e-112 370.0 COG0164@1|root,COG0164@2|Bacteria,1RA65@1224|Proteobacteria,42REG@68525|delta/epsilon subdivisions,2WNK2@28221|Deltaproteobacteria,2YXI1@29|Myxococcales 28221|Deltaproteobacteria L Ribonuclease HII rnhB GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 ko:K03470 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DUF208,RNase_HII DYD2_k127_3656537_2 224911.27355053 3.23e-58 209.0 COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,1MVWY@1224|Proteobacteria,2TRSZ@28211|Alphaproteobacteria,3JR3Z@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L DNA ligase ligD - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,LigD_N DYD2_k127_3656537_1 1137281.D778_00318 6.184e-60 212.0 COG5483@1|root,COG5483@2|Bacteria,4NNWS@976|Bacteroidetes,1I1Z4@117743|Flavobacteriia 976|Bacteroidetes S Protein of unknown function, DUF488 - - - - - - - - - - - - DUF488 DYD2_k127_3656537_4 234267.Acid_5076 1.347e-23 104.0 COG3285@1|root,COG3285@2|Bacteria,3Y74I@57723|Acidobacteria 57723|Acidobacteria L dna ligase - - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - - DYD2_k127_3671940_3 1449335.JQLG01000004_gene1536 1.283e-92 312.0 COG1249@1|root,COG1249@2|Bacteria,1TS0Z@1239|Firmicutes,4HBYB@91061|Bacilli,27GZ5@186828|Carnobacteriaceae 91061|Bacilli C Pyridine nucleotide-disulphide oxidoreductase gshR - 1.8.1.7 ko:K00383 ko00480,ko04918,map00480,map04918 - R00094,R00115 RC00011 ko00000,ko00001,ko01000 - - - Pyr_redox_2,Pyr_redox_dim DYD2_k127_3671940_1 338969.Rfer_1146 7.826e-191 604.0 COG5368@1|root,COG5368@2|Bacteria,1NX2K@1224|Proteobacteria,2VI7H@28216|Betaproteobacteria,4AD7E@80864|Comamonadaceae 28216|Betaproteobacteria S Putative glucoamylase - - - - - - - - - - - - Glycoamylase DYD2_k127_3671940_0 935548.KI912159_gene4482 9.891e-195 618.0 COG3664@1|root,COG3664@2|Bacteria,1MWYX@1224|Proteobacteria,2U2MC@28211|Alphaproteobacteria 28211|Alphaproteobacteria G Beta-xylosidase - - 3.2.1.37 ko:K01198 ko00520,ko01100,map00520,map01100 - R01433 RC00467 ko00000,ko00001,ko01000 - GH43 - Glyco_hydro_39 DYD2_k127_3671940_4 251221.35211733 9.315e-47 171.0 COG0837@1|root,COG0837@2|Bacteria,1G1TJ@1117|Cyanobacteria 1117|Cyanobacteria G Belongs to the bacterial glucokinase family glk - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Glucokinase DYD2_k127_3671940_5 1541065.JRFE01000014_gene1171 0.0004405 51.0 COG1651@1|root,COG1651@2|Bacteria,1G2ZB@1117|Cyanobacteria,3VKNQ@52604|Pleurocapsales 1117|Cyanobacteria O DSBA-like thioredoxin domain - - - - - - - - - - - - Thioredoxin_4 DYD2_k127_3671940_2 1267533.KB906738_gene2031 6.242e-121 395.0 COG1398@1|root,COG1398@2|Bacteria,3Y3F9@57723|Acidobacteria,2JHWH@204432|Acidobacteriia 204432|Acidobacteriia I PFAM Fatty acid desaturase - - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase DYD2_k127_3673304_0 1047013.AQSP01000134_gene1354 2.378e-263 816.0 COG2382@1|root,COG2382@2|Bacteria 2|Bacteria P enterobactin catabolic process - - - - - - - - - - - - Esterase DYD2_k127_3673304_7 1380391.JIAS01000015_gene182 5.911e-25 105.0 COG3668@1|root,32ZH9@2|Bacteria,1N7YH@1224|Proteobacteria,2UC0X@28211|Alphaproteobacteria,2JTQ5@204441|Rhodospirillales 204441|Rhodospirillales S Plasmid stabilization - - - - - - - - - - - - - DYD2_k127_3673304_2 324602.Caur_2455 3.862e-96 323.0 COG2162@1|root,COG2162@2|Bacteria,2G8H7@200795|Chloroflexi 200795|Chloroflexi H Belongs to the arylamine N-acetyltransferase family - - 2.3.1.118 ko:K00675 - - - - ko00000,ko01000 - - - Acetyltransf_2 DYD2_k127_3673304_9 866536.Belba_1265 2.255e-17 88.0 arCOG13956@1|root,33BWW@2|Bacteria,4P4JQ@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_3673304_6 314230.DSM3645_10977 2.564e-31 128.0 COG4270@1|root,COG4270@2|Bacteria,2J0EK@203682|Planctomycetes 203682|Planctomycetes S membrane - - - - - - - - - - - - DoxX_2 DYD2_k127_3673304_5 948106.AWZT01000001_gene5337 4.073e-58 204.0 COG1764@1|root,COG1764@2|Bacteria,1RH9U@1224|Proteobacteria,2VTKP@28216|Betaproteobacteria,1K3AS@119060|Burkholderiaceae 28216|Betaproteobacteria O PFAM OsmC family protein osmC - - ko:K04063 - - - - ko00000 - - - OsmC DYD2_k127_3673304_8 1279009.ADICEAN_02616 1.272e-19 94.0 COG4334@1|root,COG4334@2|Bacteria,4NSAC@976|Bacteroidetes 976|Bacteroidetes S Uncharacterized protein conserved in bacteria (DUF2255) - - - - - - - - - - - - DUF2255 DYD2_k127_3673304_3 472759.Nhal_1764 2.385e-92 310.0 COG3485@1|root,COG3485@2|Bacteria,1MV6K@1224|Proteobacteria,1S376@1236|Gammaproteobacteria,1X1QH@135613|Chromatiales 135613|Chromatiales Q Dioxygenase - - 1.13.11.3 ko:K00449 ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220 - R01631,R03549 RC00388,RC00953 br01602,ko00000,ko00001,ko01000 - - - Dioxygenase_C DYD2_k127_3673304_10 671143.DAMO_0870 2.164e-08 66.0 COG0741@1|root,COG0741@2|Bacteria 2|Bacteria M lytic transglycosylase activity - - - ko:K03194 ko03070,map03070 M00333 - - ko00000,ko00001,ko00002,ko02044 - - - CHAP,SLT DYD2_k127_3673304_4 1121428.DESHY_160090___1 3.033e-64 229.0 COG2859@1|root,COG2859@2|Bacteria,1V1Q4@1239|Firmicutes,24GEE@186801|Clostridia,264GJ@186807|Peptococcaceae 186801|Clostridia S Protein of unknown function (DUF541) - - - ko:K09797 - - - - ko00000 - - - SIMPL DYD2_k127_3673304_1 1173024.KI912148_gene4571 5.919e-166 530.0 COG1505@1|root,COG1505@2|Bacteria,1G1B7@1117|Cyanobacteria,1JMTM@1189|Stigonemataceae 1117|Cyanobacteria E Prolyl oligopeptidase, N-terminal beta-propeller domain - - 3.4.21.26 ko:K01322 ko04614,map04614 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N DYD2_k127_3679169_1 118163.Ple7327_3612 5.219e-07 53.0 COG0429@1|root,COG0429@2|Bacteria,1G1DG@1117|Cyanobacteria,3VJG9@52604|Pleurocapsales 1117|Cyanobacteria S COGs COG0429 hydrolase of the alpha beta-hydrolase fold - GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0044237,GO:0044238,GO:0044255,GO:0071704 - ko:K07019 - - - - ko00000 - - - Abhydrolase_1,Abhydrolase_6,Hydrolase_4 DYD2_k127_3679169_0 1267535.KB906767_gene5522 7.067e-98 353.0 COG1196@1|root,COG1196@2|Bacteria,3Y2W1@57723|Acidobacteria,2JHJF@204432|Acidobacteriia 204432|Acidobacteriia D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N,SMC_hinge DYD2_k127_3687777_1 1232410.KI421413_gene824 7.343e-53 199.0 COG2812@1|root,COG2812@2|Bacteria,1QVB3@1224|Proteobacteria,42SBC@68525|delta/epsilon subdivisions,2WPCK@28221|Deltaproteobacteria,43RXK@69541|Desulfuromonadales 28221|Deltaproteobacteria L DNA polymerase III, delta subunit, C terminal holB - 2.7.7.7 ko:K02341 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNApol3-delta_C DYD2_k127_3687777_0 351607.Acel_1971 2.843e-55 201.0 COG0125@1|root,COG0477@1|root,COG0125@2|Bacteria,COG2814@2|Bacteria,2GNTI@201174|Actinobacteria,4ES48@85013|Frankiales 201174|Actinobacteria EFGP Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis tmk - 2.7.4.9 ko:K00943 ko00240,ko01100,map00240,map01100 M00053 R02094,R02098 RC00002 ko00000,ko00001,ko00002,ko01000 - - - MFS_3,Thymidylate_kin DYD2_k127_3687777_2 682795.AciX8_2034 8.092e-23 101.0 COG1923@1|root,COG1923@2|Bacteria,3Y59T@57723|Acidobacteria,2JJSQ@204432|Acidobacteriia 204432|Acidobacteriia S RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs hfq - - ko:K03666 ko02024,ko03018,ko05111,map02024,map03018,map05111 - - - ko00000,ko00001,ko03019,ko03036 - - - Hfq DYD2_k127_3687777_3 1009370.ALO_19867 3.027e-14 75.0 COG0324@1|root,COG0324@2|Bacteria,1TPSC@1239|Firmicutes,4H1XU@909932|Negativicutes 909932|Negativicutes H Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) miaA - 2.5.1.75 ko:K00791 ko00908,ko01100,ko01110,map00908,map01100,map01110 - R01122 RC02820 ko00000,ko00001,ko01000,ko01006,ko03016 - - - IPPT DYD2_k127_3690390_2 648757.Rvan_0770 6.498e-29 120.0 COG1215@1|root,COG1215@2|Bacteria,1QTWU@1224|Proteobacteria,2TWRY@28211|Alphaproteobacteria 28211|Alphaproteobacteria M Glycosyl transferase, family 2 - - - ko:K20534 - - - - ko00000,ko01000,ko01005,ko02000 4.D.2.1.9 GT2 - Glycos_transf_2 DYD2_k127_3690390_0 378806.STAUR_4537 3.013e-87 300.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42P6D@68525|delta/epsilon subdivisions,2WM1P@28221|Deltaproteobacteria,2YUD4@29|Myxococcales 28221|Deltaproteobacteria T DNA-binding response regulator - - - ko:K07713 ko02020,map02020 M00499 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_3692678_7 1500257.JQNM01000002_gene4888 8.518e-06 51.0 COG1032@1|root,COG1032@2|Bacteria,1R9RK@1224|Proteobacteria,2U975@28211|Alphaproteobacteria 28211|Alphaproteobacteria C Radical SAM - - - - - - - - - - - - Radical_SAM DYD2_k127_3692678_3 926561.KB900622_gene533 4.216e-79 274.0 COG3621@1|root,COG3621@2|Bacteria,1V83Q@1239|Firmicutes,24AVQ@186801|Clostridia 186801|Clostridia S Patatin-like phospholipase - - - - - - - - - - - - Patatin DYD2_k127_3692678_1 32057.KB217478_gene1570 3.633e-172 555.0 COG0318@1|root,COG3320@1|root,COG0318@2|Bacteria,COG3320@2|Bacteria,1GQ2D@1117|Cyanobacteria,1HRCJ@1161|Nostocales 1117|Cyanobacteria Q Male sterility protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,NAD_binding_4,PP-binding DYD2_k127_3692678_0 886293.Sinac_1156 0.0 1035.0 COG0515@1|root,COG3899@1|root,COG0515@2|Bacteria,COG3899@2|Bacteria,2J2QS@203682|Planctomycetes 203682|Planctomycetes KLT AAA ATPase domain - - - - - - - - - - - - AAA_16,Pkinase DYD2_k127_3692678_6 644282.Deba_1971 1.102e-22 102.0 COG2119@1|root,COG2119@2|Bacteria,1NDE6@1224|Proteobacteria,42W66@68525|delta/epsilon subdivisions,2WS4K@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Uncharacterized protein family UPF0016 - - - - - - - - - - - - UPF0016 DYD2_k127_3692678_2 886293.Sinac_1590 7.922e-90 303.0 COG1814@1|root,COG1814@2|Bacteria,2J1PA@203682|Planctomycetes 203682|Planctomycetes S VIT family - - - - - - - - - - - - VIT1 DYD2_k127_3692678_4 1410653.JHVC01000031_gene852 3.839e-45 186.0 COG3391@1|root,COG3391@2|Bacteria,1V6KE@1239|Firmicutes 1239|Firmicutes DZ Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - - - - - - - - - - VCBS DYD2_k127_3692678_5 316274.Haur_2364 1.784e-28 119.0 2BVMR@1|root,30IRV@2|Bacteria,2GB8Z@200795|Chloroflexi,377KA@32061|Chloroflexia 32061|Chloroflexia S AP2 domain - - - - - - - - - - - - AP2 DYD2_k127_3701472_2 742740.HMPREF9474_00245 3.048e-08 61.0 COG2244@1|root,COG2244@2|Bacteria,1V8VR@1239|Firmicutes,24BD7@186801|Clostridia 186801|Clostridia S Polysaccharide biosynthesis protein - - - - - - - - - - - - Polysacc_synt,Polysacc_synt_3,Polysacc_synt_C DYD2_k127_3701472_0 517418.Ctha_2023 3.296e-179 582.0 COG0367@1|root,COG0367@2|Bacteria,1FDEI@1090|Chlorobi 1090|Chlorobi F TIGRFAM asparagine synthase (glutamine-hydrolyzing) - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_3701472_1 1545915.JROG01000009_gene2796 9.095e-14 77.0 COG0223@1|root,COG0223@2|Bacteria,1MZ1H@1224|Proteobacteria 1224|Proteobacteria J Formyl transferase - - - - - - - - - - - - Formyl_trans_N DYD2_k127_3707763_2 391038.Bphy_3708 1.461e-65 226.0 COG3795@1|root,COG3795@2|Bacteria,1RCZT@1224|Proteobacteria,2VRD1@28216|Betaproteobacteria,1K7RP@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM DGPFAETKE family protein - - - - - - - - - - - - YCII DYD2_k127_3707763_1 1123248.KB893327_gene788 5.907e-113 371.0 COG0258@1|root,COG0258@2|Bacteria 2|Bacteria L nuclease activity polA GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 DYD2_k127_3707763_0 861299.J421_4119 3.108e-212 670.0 COG0534@1|root,COG0534@2|Bacteria,1ZT8D@142182|Gemmatimonadetes 142182|Gemmatimonadetes V MatE - - - - - - - - - - - - MatE DYD2_k127_3707763_4 985053.VMUT_0309 6.025e-08 58.0 COG1225@1|root,arCOG00310@2157|Archaea,2XQPI@28889|Crenarchaeota 28889|Crenarchaeota O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen bcp - 1.11.1.15 ko:K03564 - - - - ko00000,ko01000 - - - AhpC-TSA DYD2_k127_3707763_3 697303.Thewi_0984 5.138e-50 187.0 COG1077@1|root,COG1077@2|Bacteria,1TP51@1239|Firmicutes,247RG@186801|Clostridia,42EXB@68295|Thermoanaerobacterales 186801|Clostridia D TIGRFAM Cell shape determining protein MreB Mrl mreB - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl DYD2_k127_3767358_1 1449076.JOOE01000004_gene117 1.637e-42 160.0 COG0604@1|root,COG0604@2|Bacteria,1QY0U@1224|Proteobacteria 1224|Proteobacteria C Putative lumazine-binding - - - - - - - - - - - - Lumazine_bd_2 DYD2_k127_3767358_2 243090.RB8505 4.143e-08 59.0 COG1520@1|root,COG1520@2|Bacteria,2J2YU@203682|Planctomycetes 203682|Planctomycetes S PQQ-like domain - - - - - - - - - - - - PQQ_2 DYD2_k127_3767358_4 243090.RB10124 0.0001344 46.0 COG1520@1|root,COG1520@2|Bacteria,2J1VI@203682|Planctomycetes 203682|Planctomycetes S PQQ-like domain - - - - - - - - - - - - PQQ_2 DYD2_k127_3767358_0 1340493.JNIF01000003_gene3478 4.247e-183 612.0 COG4774@1|root,COG4774@2|Bacteria 2|Bacteria P siderophore transport - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_3767358_3 401053.AciPR4_0881 9.081e-06 50.0 COG1629@1|root,COG4771@2|Bacteria,3Y6I7@57723|Acidobacteria,2JK86@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_377131_2 471857.Svir_20930 1.52e-14 75.0 COG3427@1|root,COG3427@2|Bacteria,2IEYK@201174|Actinobacteria,4EB4A@85010|Pseudonocardiales 201174|Actinobacteria S PFAM carbon monoxide dehydrogenase subunit G - - - ko:K09386 - - - - ko00000 - - - COXG DYD2_k127_377131_0 525904.Tter_2232 8.876e-85 290.0 COG1319@1|root,COG1319@2|Bacteria,2NQP8@2323|unclassified Bacteria 2|Bacteria C CO dehydrogenase flavoprotein C-terminal domain - - 1.2.5.3 ko:K03519 - - R11168 RC02800 ko00000,ko01000 - - - CO_deh_flav_C,FAD_binding_5 DYD2_k127_377131_1 234267.Acid_2226 6.796e-79 269.0 COG1529@1|root,COG1529@2|Bacteria,3Y6BF@57723|Acidobacteria 57723|Acidobacteria C aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - 1.2.5.3 ko:K03520 - - R11168 RC02800 ko00000,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_3780236_3 1122997.AUDD01000006_gene177 1.294e-10 70.0 COG2197@1|root,COG2197@2|Bacteria,2GIVA@201174|Actinobacteria,4DPAM@85009|Propionibacteriales 201174|Actinobacteria T helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg DYD2_k127_3780236_1 1120949.KB903357_gene4933 3.948e-57 216.0 COG4447@1|root,COG4447@2|Bacteria,2IT8P@201174|Actinobacteria 201174|Actinobacteria M phospholipase C - - - - - - - - - - - - - DYD2_k127_3780236_2 1121405.dsmv_2300 1.747e-14 74.0 2EFZF@1|root,339RM@2|Bacteria,1NH6S@1224|Proteobacteria,42WYZ@68525|delta/epsilon subdivisions,2WT48@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3780236_0 1192034.CAP_0268 5.585e-103 347.0 COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,42M4Z@68525|delta/epsilon subdivisions,2WJ0D@28221|Deltaproteobacteria,2YUHW@29|Myxococcales 28221|Deltaproteobacteria O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH-3 - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 DYD2_k127_3782381_2 234267.Acid_5685 2.672e-18 87.0 COG1143@1|root,COG1143@2|Bacteria,3Y529@57723|Acidobacteria 57723|Acidobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00338 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer4,Fer4_7 DYD2_k127_3782381_1 671143.DAMO_2695 1.261e-98 338.0 COG1005@1|root,COG1005@2|Bacteria,2NNTT@2323|unclassified Bacteria 2|Bacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone nuoH GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 ko:K00337 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - NADHdh DYD2_k127_3782381_0 204669.Acid345_1289 3.081e-157 504.0 COG0649@1|root,COG0649@2|Bacteria,3Y3AB@57723|Acidobacteria,2JKWC@204432|Acidobacteriia 204432|Acidobacteriia C Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - 1.6.5.3 ko:K00333 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_49kDa DYD2_k127_3788099_3 631362.Thi970DRAFT_01817 3.527e-12 70.0 COG4850@1|root,COG4850@2|Bacteria,1R3ST@1224|Proteobacteria,1RYC6@1236|Gammaproteobacteria,1WZHP@135613|Chromatiales 135613|Chromatiales S Uncharacterized conserved protein (DUF2183) - - - - - - - - - - - - DUF2183 DYD2_k127_3788099_2 1210884.HG799464_gene10412 4.388e-28 124.0 COG1075@1|root,COG1075@2|Bacteria,2J0WZ@203682|Planctomycetes 203682|Planctomycetes S acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - - - - - - - - - - - DYD2_k127_3788099_0 82654.Pse7367_1535 3.275e-128 415.0 COG0863@1|root,COG0863@2|Bacteria,1G2AV@1117|Cyanobacteria,1H9PZ@1150|Oscillatoriales 1117|Cyanobacteria L Belongs to the N(4) N(6)-methyltransferase family - - 2.1.1.113,2.1.1.72 ko:K00571,ko:K00590 - - - - ko00000,ko01000,ko02048 - - - N6_N4_Mtase,RE_EcoO109I DYD2_k127_3788238_0 1121920.AUAU01000004_gene641 1.527e-192 613.0 COG1770@1|root,COG1770@2|Bacteria,3Y3PK@57723|Acidobacteria 57723|Acidobacteria E peptidase S9A, prolyl oligopeptidase domain protein beta-propeller - - 3.4.21.83 ko:K01354 ko05142,ko05143,map05142,map05143 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N DYD2_k127_3788238_1 926566.Terro_2493 1.543e-132 452.0 COG0457@1|root,COG0515@1|root,COG5616@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,COG5616@2|Bacteria,3Y44T@57723|Acidobacteria,2JP2J@204432|Acidobacteriia 204432|Acidobacteriia KLT PFAM Protein kinase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase,TPR_11 DYD2_k127_3788238_4 56780.SYN_00526 3.285e-36 148.0 COG0639@1|root,COG0639@2|Bacteria,1RD8M@1224|Proteobacteria,42RQP@68525|delta/epsilon subdivisions,2WNQ7@28221|Deltaproteobacteria,2MRTQ@213462|Syntrophobacterales 28221|Deltaproteobacteria T Calcineurin-like phosphoesterase - - 3.1.3.16 ko:K07313 - - - - ko00000,ko01000 - - - Metallophos,Metallophos_2 DYD2_k127_3788238_3 1123277.KB893185_gene2990 4.471e-65 230.0 COG1878@1|root,COG1878@2|Bacteria,4NHMW@976|Bacteroidetes,47MGZ@768503|Cytophagia 976|Bacteroidetes S Putative cyclase - - - - - - - - - - - - Cyclase DYD2_k127_3788238_2 1267535.KB906767_gene4165 5.81e-78 270.0 COG0142@1|root,COG0142@2|Bacteria,3Y2HS@57723|Acidobacteria,2JIPK@204432|Acidobacteriia 204432|Acidobacteriia H Belongs to the FPP GGPP synthase family - - 2.5.1.1,2.5.1.10,2.5.1.29 ko:K13789 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00364,M00366 R01658,R02003,R02061 RC00279 ko00000,ko00001,ko00002,ko01000,ko01006 - - - polyprenyl_synt DYD2_k127_3788238_5 1267535.KB906767_gene4164 1.061e-14 77.0 COG1722@1|root,COG1722@2|Bacteria,3Y5RT@57723|Acidobacteria 57723|Acidobacteria L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseB - 3.1.11.6 ko:K03602 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_S DYD2_k127_3807273_1 1232410.KI421421_gene3373 5.217e-79 269.0 COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,42NNW@68525|delta/epsilon subdivisions,2WMWA@28221|Deltaproteobacteria,43T6N@69541|Desulfuromonadales 28221|Deltaproteobacteria GM ABC transporter - - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C DYD2_k127_3807273_0 1121405.dsmv_0732 5.952e-100 341.0 2AK27@1|root,31ARV@2|Bacteria,1REZR@1224|Proteobacteria,42W34@68525|delta/epsilon subdivisions,2WRFM@28221|Deltaproteobacteria,2MNUM@213118|Desulfobacterales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3807273_4 1296415.JACC01000006_gene1472 0.0001543 52.0 2E6PT@1|root,331A4@2|Bacteria,4NVEZ@976|Bacteroidetes,1I5S3@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - Acetyltransf_1 DYD2_k127_3807273_3 1232410.KI421421_gene3374 0.0001422 45.0 2AK27@1|root,31ARV@2|Bacteria,1REZR@1224|Proteobacteria,42W34@68525|delta/epsilon subdivisions,2WRFM@28221|Deltaproteobacteria,43VW3@69541|Desulfuromonadales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_3807273_2 111780.Sta7437_3576 4.232e-11 64.0 COG0745@1|root,COG0745@2|Bacteria,1GQR9@1117|Cyanobacteria,3VMJN@52604|Pleurocapsales 1117|Cyanobacteria KT RESPONSE REGULATOR receiver - - - - - - - - - - - - - DYD2_k127_3820952_1 1298867.AUES01000067_gene5125 4.97e-163 543.0 COG2203@1|root,COG4191@1|root,COG2203@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TTJ0@28211|Alphaproteobacteria,3JS5D@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria T Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - - - - - - - - - - GAF_2,HAMP,HATPase_c,HisKA,PAS_7,dCache_1 DYD2_k127_3820952_2 1396418.BATQ01000103_gene5522 4.975e-14 76.0 COG3385@1|root,COG3385@2|Bacteria 2|Bacteria L transposase activity - - - - - - - - - - - - DDE_Tnp_1_4 DYD2_k127_3820952_0 1235457.C404_07115 6.113e-169 539.0 COG0624@1|root,COG0624@2|Bacteria,1MUSU@1224|Proteobacteria 1224|Proteobacteria E COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases cpg2 - 3.4.17.11 ko:K01295 - - - - ko00000,ko01000,ko01002 - - - M20_dimer,Peptidase_M20,Peptidase_M28 DYD2_k127_3821743_0 234267.Acid_2379 5.447e-82 287.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,3Y5S6@57723|Acidobacteria 57723|Acidobacteria S Tetratricopeptide TPR_2 repeat protein - - - - - - - - - - - - CHAT,TPR_12 DYD2_k127_3821743_1 864051.BurJ1DRAFT_0568 1.017e-41 166.0 COG1404@1|root,COG1572@1|root,COG1404@2|Bacteria,COG1572@2|Bacteria,1MU3S@1224|Proteobacteria,2VZPE@28216|Betaproteobacteria 28216|Betaproteobacteria M CARDB domain-containing protein,subtilase family protease - - - - - - - - - - - - CARDB,Peptidase_S8 DYD2_k127_3822762_1 497965.Cyan7822_2817 4.941e-72 256.0 COG0666@1|root,COG0666@2|Bacteria,1GEMS@1117|Cyanobacteria 1117|Cyanobacteria S Domain of unknown function (DUF1835) - - - - - - - - - - - - DUF1835 DYD2_k127_3822762_0 1267534.KB906754_gene2572 1.034e-159 514.0 COG1473@1|root,COG1473@2|Bacteria,3Y40E@57723|Acidobacteria,2JIBT@204432|Acidobacteriia 204432|Acidobacteriia S Peptidase dimerisation domain - - - - - - - - - - - - M20_dimer,Peptidase_M20 DYD2_k127_3823451_1 56107.Cylst_1534 5.852e-51 186.0 COG2850@1|root,COG2850@2|Bacteria,1G3C8@1117|Cyanobacteria,1HQ1R@1161|Nostocales 1117|Cyanobacteria S A domain family that is part of the cupin metalloenzyme superfamily. - - 1.14.11.27,1.14.11.30 ko:K10277,ko:K18055 - - - - ko00000,ko01000,ko03036 - - - Cupin_8 DYD2_k127_3823451_0 1173027.Mic7113_1748 8.254e-177 569.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H837@1150|Oscillatoriales 1117|Cyanobacteria Q Non-ribosomal peptide synthetase modules and related - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,PilZ DYD2_k127_3827698_3 388467.A19Y_3558 1.158e-17 93.0 COG4240@1|root,COG4240@2|Bacteria,1G1II@1117|Cyanobacteria,1H7AE@1150|Oscillatoriales 1117|Cyanobacteria S COGs COG4240 kinase - - 2.7.1.31 ko:K15918 ko00260,ko00561,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00561,map00630,map01100,map01110,map01130,map01200 M00532 R01514 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - - DYD2_k127_3827698_0 123214.PERMA_0323 3.541e-53 196.0 COG1335@1|root,COG1335@2|Bacteria,2G3XJ@200783|Aquificae 200783|Aquificae Q Nicotinamidase pncA - 3.5.1.19 ko:K08281 ko00760,ko01100,map00760,map01100 - R01268 RC00100 ko00000,ko00001,ko01000 - - - Isochorismatase DYD2_k127_3827698_1 1379270.AUXF01000002_gene1393 3.762e-49 180.0 2DRPS@1|root,33CHR@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF2204 DYD2_k127_3827698_2 665571.STHERM_c07040 1.298e-35 149.0 COG1488@1|root,COG1488@2|Bacteria,2J5IF@203691|Spirochaetes 203691|Spirochaetes F Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP pncB - 6.3.4.21 ko:K00763 ko00760,ko01100,map00760,map01100 - R01724 RC00033 ko00000,ko00001,ko01000 - - - NAPRTase DYD2_k127_382892_2 1169154.KB897780_gene2186 0.000223 54.0 2BWH2@1|root,2Z89R@2|Bacteria,2GMNW@201174|Actinobacteria 201174|Actinobacteria - - - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - - DYD2_k127_382892_0 204669.Acid345_0083 2.928e-38 149.0 COG0801@1|root,COG0801@2|Bacteria,3Y57F@57723|Acidobacteria,2JJMS@204432|Acidobacteriia 204432|Acidobacteriia H 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) - - 2.7.6.3 ko:K00950 ko00790,ko01100,map00790,map01100 M00126,M00841 R03503 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HPPK DYD2_k127_382892_1 1047013.AQSP01000096_gene2178 1.137e-21 96.0 COG0413@1|root,COG0413@2|Bacteria,2NP1G@2323|unclassified Bacteria 2|Bacteria H Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate panB - 2.1.2.11 ko:K00606 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R01226 RC00022,RC00200 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_transf DYD2_k127_3831584_2 1286631.X805_06490 0.0003214 53.0 COG0457@1|root,COG3087@1|root,COG0457@2|Bacteria,COG3087@2|Bacteria,1MVB8@1224|Proteobacteria,2VHKT@28216|Betaproteobacteria,1KNST@119065|unclassified Burkholderiales 28216|Betaproteobacteria D Cellulose synthase operon protein C C-terminus (BCSC_C) bscS - - ko:K20543 - - - - ko00000,ko02000 1.B.55.3 - - BCSC_C,TPR_16,TPR_19,TPR_4,TPR_7,TPR_8 DYD2_k127_3831584_0 1267535.KB906767_gene4333 1.926e-97 344.0 COG0308@1|root,COG0457@1|root,COG0308@2|Bacteria,COG0457@2|Bacteria,3Y3C5@57723|Acidobacteria,2JI5M@204432|Acidobacteriia 204432|Acidobacteriia E Peptidase family M1 domain - - - - - - - - - - - - Peptidase_M1,TPR_11,TPR_16 DYD2_k127_3831584_1 28072.Nos7524_2690 7.084e-91 303.0 COG3467@1|root,COG3467@2|Bacteria,1G4RC@1117|Cyanobacteria,1HK26@1161|Nostocales 1117|Cyanobacteria S Pyridoxamine 5'-phosphate oxidase - - - ko:K07005 - - - - ko00000 - - - Pyridox_ox_2 DYD2_k127_3831865_3 472759.Nhal_3072 8.549e-16 86.0 COG5607@1|root,COG5607@2|Bacteria,1NGVB@1224|Proteobacteria 1224|Proteobacteria S PFAM CHAD domain containing protein - - - - - - - - - - - - CHAD DYD2_k127_3831865_0 1267535.KB906767_gene4250 3.417e-178 568.0 COG4941@1|root,COG4941@2|Bacteria,3Y38B@57723|Acidobacteria 57723|Acidobacteria K Sigma-70 region 2 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_3831865_2 272134.KB731324_gene6666 3.016e-46 170.0 COG3795@1|root,COG3795@2|Bacteria,1G6M3@1117|Cyanobacteria,1HBWD@1150|Oscillatoriales 1117|Cyanobacteria S YCII-related domain - - - - - - - - - - - - YCII DYD2_k127_3831865_1 251221.35211908 7.497e-49 178.0 COG1621@1|root,COG3191@1|root,COG1621@2|Bacteria,COG3191@2|Bacteria,1GR11@1117|Cyanobacteria 2|Bacteria EQ beta-fructofuranosidase activity - - - - - - - - - - - - BNR_2,DUF608,Glyco_hydr_116N,VCBS DYD2_k127_3837942_2 926569.ANT_07230 2.232e-37 145.0 COG4577@1|root,COG4577@2|Bacteria 2|Bacteria CQ ethanolamine catabolic process - - - ko:K04027 - - - - ko00000 - - - BMC DYD2_k127_3837942_3 390333.Ldb0597 1.113e-13 78.0 COG1426@1|root,COG1426@2|Bacteria,1V1N7@1239|Firmicutes,4HKW3@91061|Bacilli,3F3SM@33958|Lactobacillaceae 91061|Bacilli S Helix-turn-helix domain ymfM - - ko:K15539 - - - - ko00000 - - - DUF4115,HTH_25 DYD2_k127_3837942_0 243231.GSU2195 1.73e-202 640.0 COG0516@1|root,COG0517@1|root,COG0516@2|Bacteria,COG0517@2|Bacteria,1MUJM@1224|Proteobacteria,42M2M@68525|delta/epsilon subdivisions,2WJ5H@28221|Deltaproteobacteria,43TA3@69541|Desulfuromonadales 28221|Deltaproteobacteria F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth guaB - 1.1.1.205 ko:K00088 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 M00050 R01130,R08240 RC00143,RC02207 ko00000,ko00001,ko00002,ko01000,ko04147 - - - CBS,IMPDH,NMO DYD2_k127_3837942_1 292459.STH2424 2.334e-50 193.0 COG1597@1|root,COG1597@2|Bacteria,1TQAU@1239|Firmicutes,249SY@186801|Clostridia 186801|Clostridia I lipid kinase, YegS Rv2252 BmrU family - - - - - - - - - - - - DAGK_cat DYD2_k127_3838071_3 937777.Deipe_0616 4.64e-35 136.0 COG0028@1|root,COG3055@1|root,COG0028@2|Bacteria,COG3055@2|Bacteria 2|Bacteria G Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - 3.2.1.4,4.1.3.1 ko:K01179,ko:K01637 ko00500,ko00630,ko01100,ko01110,ko01120,ko01200,map00500,map00630,map01100,map01110,map01120,map01200 M00012 R00479,R06200,R11307,R11308 RC00311,RC00313 ko00000,ko00001,ko00002,ko01000 - GH5,GH9 - Kelch_1,Laminin_G_3,Malectin,PKD,TIG DYD2_k127_3838071_2 401053.AciPR4_0200 3.361e-50 191.0 2AUD4@1|root,31K11@2|Bacteria,3Y5UI@57723|Acidobacteria,2JNB8@204432|Acidobacteriia 204432|Acidobacteriia S Parallel beta-helix repeats - - - - - - - - - - - - Beta_helix DYD2_k127_3838071_1 234267.Acid_4640 5.447e-92 311.0 COG1682@1|root,COG1682@2|Bacteria,3Y7JV@57723|Acidobacteria 57723|Acidobacteria GM ABC-2 type transporter - - - ko:K09690 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC2_membrane DYD2_k127_3838071_0 118173.KB235914_gene3925 1.31e-137 449.0 COG1134@1|root,COG1134@2|Bacteria,1G28R@1117|Cyanobacteria,1H8CS@1150|Oscillatoriales 1117|Cyanobacteria GM ABC-type polysaccharide polyol phosphate transport system ATPase component - - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C DYD2_k127_3838071_4 1121267.JHZL01000004_gene1635 5.753e-18 92.0 COG0500@1|root,COG2226@2|Bacteria,1N867@1224|Proteobacteria,4310U@68525|delta/epsilon subdivisions 1224|Proteobacteria Q Nodulation protein S (NodS) - - - - - - - - - - - - Methyltransf_31 DYD2_k127_3838818_0 1487923.DP73_00025 3.992e-63 225.0 COG2135@1|root,COG2135@2|Bacteria,1TRRV@1239|Firmicutes,24GD7@186801|Clostridia,261PJ@186807|Peptococcaceae 186801|Clostridia S Belongs to the SOS response-associated peptidase family - - - - - - - - - - - - SRAP DYD2_k127_3838818_2 189753.AXAS01000041_gene2534 6.778e-24 102.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3838818_1 189753.AXAS01000041_gene2534 8.005e-60 217.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3838818_3 189753.AXAS01000056_gene5959 3.989e-15 75.0 COG2984@1|root,COG2984@2|Bacteria,1RDUT@1224|Proteobacteria,2U8XC@28211|Alphaproteobacteria,3JYZA@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_3850556_0 247490.KSU1_D0504 1.824e-121 402.0 COG0683@1|root,COG2010@1|root,COG0683@2|Bacteria,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - - - - - - - - - - Cytochrom_C,Peripla_BP_6 DYD2_k127_3850556_2 1121373.KB903654_gene1559 4.911e-05 54.0 COG0845@1|root,COG0845@2|Bacteria,4NG8S@976|Bacteroidetes,47NGP@768503|Cytophagia 976|Bacteroidetes M Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - ko:K07798 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4,8.A.1 - - HlyD_3,HlyD_D23 DYD2_k127_3850556_1 247490.KSU1_D0505 1.872e-44 171.0 COG1999@1|root,COG1999@2|Bacteria,2IZH2@203682|Planctomycetes 203682|Planctomycetes S SCO1/SenC - - - ko:K07152,ko:K08976 - - - - ko00000,ko03029 - - - DUF420,SCO1-SenC DYD2_k127_3857057_0 1144275.COCOR_02854 5.76e-176 578.0 COG4385@1|root,COG4385@2|Bacteria,1NEK3@1224|Proteobacteria,4327R@68525|delta/epsilon subdivisions,2WY5F@28221|Deltaproteobacteria,2YW00@29|Myxococcales 28221|Deltaproteobacteria S Phage tail protein (Tail_P2_I) - - - - - - - - - - - - Tail_P2_I DYD2_k127_3857057_1 1144275.COCOR_02855 4.1e-16 83.0 COG3299@1|root,COG3299@2|Bacteria,1MWKI@1224|Proteobacteria,42Q9A@68525|delta/epsilon subdivisions,2WM4B@28221|Deltaproteobacteria,2YVXE@29|Myxococcales 28221|Deltaproteobacteria S Baseplate J-like protein - - - - - - - - - - - - Baseplate_J DYD2_k127_3863116_0 234267.Acid_7035 2.6e-253 802.0 COG0587@1|root,COG0587@2|Bacteria,3Y3YK@57723|Acidobacteria 57723|Acidobacteria L Belongs to the DNA polymerase type-C family. DnaE2 subfamily - - 2.7.7.7 ko:K14162 - - - - ko00000,ko01000,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon DYD2_k127_3863116_1 234267.Acid_7036 2.234e-90 316.0 COG0389@1|root,COG0389@2|Bacteria,3Y3EV@57723|Acidobacteria 57723|Acidobacteria L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII - - - ko:K14161 - - - - ko00000,ko03400 - - - IMS DYD2_k127_3863116_2 247490.KSU1_C0668 2.443e-05 47.0 COG4422@1|root,COG4422@2|Bacteria,2J1DM@203682|Planctomycetes 203682|Planctomycetes S Protein of unknown function (DUF5131) - - - - - - - - - - - - - DYD2_k127_3868431_2 322710.Avin_24850 2.443e-18 87.0 COG0517@1|root,COG0517@2|Bacteria,1QTVM@1224|Proteobacteria,1SFWU@1236|Gammaproteobacteria 1236|Gammaproteobacteria S CBS domain containing protein - - - - - - - - - - - - CBS DYD2_k127_3868431_0 1173023.KE650771_gene2604 5.44e-276 858.0 COG0028@1|root,COG0028@2|Bacteria,1G0KQ@1117|Cyanobacteria,1JJ9X@1189|Stigonemataceae 1117|Cyanobacteria EH Thiamine pyrophosphate enzyme, central domain - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N DYD2_k127_3868431_1 1437882.AZRU01000003_gene1687 1.481e-50 199.0 COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RP53@1236|Gammaproteobacteria,1YFZG@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,PAS_9,Response_reg DYD2_k127_3873698_3 234267.Acid_4168 4.415e-23 100.0 COG2204@1|root,COG2204@2|Bacteria,3Y33M@57723|Acidobacteria 57723|Acidobacteria T Response regulator receiver - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_3873698_0 234267.Acid_4169 7.317e-151 494.0 COG5000@1|root,COG5000@2|Bacteria,3Y2TD@57723|Acidobacteria 57723|Acidobacteria T Histidine kinase - - - - - - - - - - - - HATPase_c DYD2_k127_3873698_1 1279017.AQYJ01000027_gene1725 5.206e-82 294.0 COG2234@1|root,COG2234@2|Bacteria,1MUZ7@1224|Proteobacteria,1RS0Q@1236|Gammaproteobacteria,4653N@72275|Alteromonadaceae 1236|Gammaproteobacteria S PA domain - - - - - - - - - - - - PA,Peptidase_M28 DYD2_k127_3873698_2 1267534.KB906758_gene2073 1.605e-56 199.0 COG1798@1|root,COG1798@2|Bacteria 2|Bacteria J diphthine synthase activity - - - - - - - - - - - - - DYD2_k127_3875525_6 330214.NIDE1600 2.294e-06 56.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis - - - - - - - - - - - - Big_3,PT-HINT,RHS_repeat DYD2_k127_3875525_2 204669.Acid345_4495 7.872e-85 301.0 COG2027@1|root,COG2027@2|Bacteria,3Y3WF@57723|Acidobacteria,2JIBN@204432|Acidobacteriia 204432|Acidobacteriia M PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C - - 3.4.16.4 ko:K07259 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Peptidase_S13 DYD2_k127_3875525_4 1122947.FR7_1594 5.844e-35 147.0 COG0859@1|root,COG0859@2|Bacteria,1TRN2@1239|Firmicutes,4H25K@909932|Negativicutes 909932|Negativicutes M lipopolysaccharide heptosyltransferase rfaF - - ko:K02841,ko:K02843 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 DYD2_k127_3875525_5 32057.KB217478_gene2591 5.772e-25 109.0 COG3177@1|root,COG3177@2|Bacteria,1GBCB@1117|Cyanobacteria,1HK8F@1161|Nostocales 1117|Cyanobacteria S Fic/DOC family - - - - - - - - - - - - Fic DYD2_k127_3875525_0 1089553.Tph_c06770 4.386e-182 583.0 COG0696@1|root,COG0696@2|Bacteria,1TPM4@1239|Firmicutes,247JG@186801|Clostridia,42FP5@68295|Thermoanaerobacterales 186801|Clostridia G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate gpmI - 5.4.2.12 ko:K15633 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000 - - - Metalloenzyme,Phosphodiest,iPGM_N DYD2_k127_3875525_3 306281.AJLK01000103_gene3365 1.264e-51 188.0 COG0454@1|root,COG0454@2|Bacteria,1G5EA@1117|Cyanobacteria,1JMBB@1189|Stigonemataceae 1117|Cyanobacteria K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_7 DYD2_k127_3875525_1 1398491.P613_01700 8.248e-88 295.0 COG0148@1|root,COG0148@2|Bacteria,2J59Y@203691|Spirochaetes 203691|Spirochaetes G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis eno - 4.2.1.11 ko:K01689 ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066 M00001,M00002,M00003,M00346,M00394 R00658 RC00349 ko00000,ko00001,ko00002,ko01000,ko03019,ko04147 - - - Enolase_C,Enolase_N DYD2_k127_3889946_3 1123405.AUMM01000007_gene921 7.427e-37 146.0 COG0531@1|root,COG0531@2|Bacteria,1V0MG@1239|Firmicutes,4HDX4@91061|Bacilli 91061|Bacilli E Amino acid permease - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 DYD2_k127_3889946_1 595537.Varpa_4901 3.36e-146 474.0 COG0412@1|root,COG0412@2|Bacteria,1MW88@1224|Proteobacteria,2VMBW@28216|Betaproteobacteria,4AE3K@80864|Comamonadaceae 28216|Betaproteobacteria Q Dienelactone hydrolase family - - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH,SnoaL_2 DYD2_k127_3889946_5 1410624.JNKK01000042_gene1160 1.646e-07 54.0 COG2336@1|root,COG2336@2|Bacteria,1VHRI@1239|Firmicutes,24RYI@186801|Clostridia,27PT4@186928|unclassified Lachnospiraceae 186801|Clostridia T SpoVT / AbrB like domain - - - - - - - - - - - - MazE_antitoxin DYD2_k127_3889946_0 99598.Cal7507_1860 1.328e-160 522.0 COG0457@1|root,COG0457@2|Bacteria,1G31A@1117|Cyanobacteria,1HKVY@1161|Nostocales 1117|Cyanobacteria S tetratricopeptide - - - - - - - - - - - - - DYD2_k127_3889946_2 861299.J421_2146 9.086e-129 424.0 COG4941@1|root,COG4941@2|Bacteria 2|Bacteria K sigma factor activity - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_3889946_4 110319.CF8_1096 5.542e-24 105.0 COG1077@1|root,COG1077@2|Bacteria,2GMD1@201174|Actinobacteria,4DPM6@85009|Propionibacteriales 201174|Actinobacteria D Actin mreB - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl DYD2_k127_3897587_2 452662.SJA_C1-22050 1.345e-05 52.0 2EBPI@1|root,335PM@2|Bacteria,1R3KC@1224|Proteobacteria,2UNS1@28211|Alphaproteobacteria,2K160@204457|Sphingomonadales 204457|Sphingomonadales - - - - - - - - - - - - - - - DYD2_k127_3897587_1 1267535.KB906767_gene1297 6.633e-25 117.0 COG2304@1|root,COG2304@2|Bacteria,3Y2PC@57723|Acidobacteria,2JI8N@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor, type A - - - - - - - - - - - - VWA,VWA_2 DYD2_k127_3897587_0 1382359.JIAL01000001_gene12 1.724e-243 758.0 COG1964@1|root,COG1964@2|Bacteria,3Y2WC@57723|Acidobacteria,2JHTH@204432|Acidobacteriia 204432|Acidobacteriia S Radical SAM - - - - - - - - - - - - Fer4_12,Radical_SAM DYD2_k127_3904197_2 1267535.KB906767_gene3210 4.671e-51 195.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_3904197_3 243365.CV_4128 8.333e-05 51.0 COG1434@1|root,COG1434@2|Bacteria,1RF6P@1224|Proteobacteria,2VS3M@28216|Betaproteobacteria,2KSW7@206351|Neisseriales 206351|Neisseriales S DUF218 domain - - - - - - - - - - - - DUF218 DYD2_k127_3904197_1 1123057.P872_14445 7.078e-102 351.0 COG0223@1|root,COG0223@2|Bacteria,4NUJG@976|Bacteroidetes,47UEJ@768503|Cytophagia 976|Bacteroidetes J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus - - - - - - - - - - - - Formyl_trans_N DYD2_k127_3904197_0 1121396.KB893096_gene3536 3.195e-120 392.0 COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,42MDV@68525|delta/epsilon subdivisions,2WJ3T@28221|Deltaproteobacteria,2MHMX@213118|Desulfobacterales 28221|Deltaproteobacteria M Belongs to the UDP-glucose GDP-mannose dehydrogenase family - - 1.1.1.22 ko:K00012 ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 M00014,M00129,M00361,M00362 R00286 RC00291 ko00000,ko00001,ko00002,ko01000 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N DYD2_k127_3915132_0 1042326.AZNV01000033_gene5181 1.887e-194 634.0 COG1112@1|root,COG2251@1|root,COG1112@2|Bacteria,COG2251@2|Bacteria,1MWW9@1224|Proteobacteria,2TTSD@28211|Alphaproteobacteria,4BDH6@82115|Rhizobiaceae 28211|Alphaproteobacteria L AAA domain - - - - - - - - - - - - AAA_11,AAA_12,AAA_30,RNase_H_2 DYD2_k127_3915132_1 1240349.ANGC01000136_gene4280 1.476e-22 102.0 COG2189@1|root,COG2189@2|Bacteria 2|Bacteria L Belongs to the N(4) N(6)-methyltransferase family - - 2.1.1.72 ko:K07316 - - - - ko00000,ko01000,ko02048 - - - N6_N4_Mtase DYD2_k127_3916331_3 56107.Cylst_3960 5.845e-31 128.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1HR5M@1161|Nostocales 1117|Cyanobacteria Q Thioesterase domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_3916331_0 926550.CLDAP_18760 1.526e-268 841.0 COG0529@1|root,COG2046@1|root,COG0529@2|Bacteria,COG2046@2|Bacteria,2G7JD@200795|Chloroflexi 200795|Chloroflexi H Catalyzes the synthesis of activated sulfate cysC - 2.7.7.4 ko:K00958 ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130 M00176,M00596 R00529,R04929 RC02809,RC02889 ko00000,ko00001,ko00002,ko01000 - - - APS_kinase,ATP-sulfurylase,PUA_2 DYD2_k127_3916331_5 1218084.BBJK01000073_gene5101 1.161e-19 100.0 COG1413@1|root,COG1413@2|Bacteria,1R4SF@1224|Proteobacteria,2VQ82@28216|Betaproteobacteria,1KHI1@119060|Burkholderiaceae 28216|Betaproteobacteria C HEAT repeat - - - - - - - - - - - - HEAT_2,HEAT_PBS DYD2_k127_3916331_2 697282.Mettu_3119 1.265e-79 282.0 COG0457@1|root,COG0457@2|Bacteria 697282.Mettu_3119|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_3916331_1 211165.AJLN01000138_gene1450 5.546e-158 516.0 COG4615@1|root,COG4615@2|Bacteria,1G2TH@1117|Cyanobacteria,1JKCZ@1189|Stigonemataceae 1117|Cyanobacteria V ABC transporter transmembrane region - - - ko:K06160 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1.113.2 - - ABC_membrane,ABC_tran DYD2_k127_3916331_4 880073.Calab_2556 8.681e-31 122.0 COG3251@1|root,COG3251@2|Bacteria,2NRE2@2323|unclassified Bacteria 2|Bacteria S MbtH-like protein - - - ko:K05375,ko:K09190 ko00261,ko01130,map00261,map01130 M00736 R10880 RC00064,RC00141,RC03296,RC03297,RC03298 ko00000,ko00001,ko00002 - - - MbtH,YqcI_YcgG DYD2_k127_3916331_6 1297865.APJD01000016_gene3407 1.13e-17 91.0 COG0250@1|root,COG0250@2|Bacteria,1N01W@1224|Proteobacteria,2U697@28211|Alphaproteobacteria,3JY91@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria K In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. - - - ko:K05785 - - - - ko00000,ko03000 - - - NusG DYD2_k127_3917654_2 1234664.AMRO01000077_gene3429 2.809e-38 145.0 COG1053@1|root,COG1053@2|Bacteria,1TPAR@1239|Firmicutes,4HAXN@91061|Bacilli,1WHAZ@129337|Geobacillus 91061|Bacilli C FAD binding domain - - - ko:K13796 - - - - ko00000 - - - FAD_binding_2 DYD2_k127_3917654_1 1231391.AMZF01000068_gene2180 1.586e-51 195.0 COG1840@1|root,COG1840@2|Bacteria,1MY20@1224|Proteobacteria,2VJ69@28216|Betaproteobacteria,3T4Q9@506|Alcaligenaceae 28216|Betaproteobacteria P Bacterial extracellular solute-binding protein - - - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - SBP_bac_6,SBP_bac_8 DYD2_k127_3917654_0 1206731.BAGB01000164_gene4363 1.434e-79 283.0 COG2079@1|root,COG2079@2|Bacteria,2GKUR@201174|Actinobacteria,4FX40@85025|Nocardiaceae 201174|Actinobacteria S MmgE/PrpD family - - - - - - - - - - - - MmgE_PrpD DYD2_k127_3919076_2 1122135.KB893167_gene2250 5.924e-30 120.0 COG0776@1|root,COG0776@2|Bacteria,1MZ5B@1224|Proteobacteria,2UC5G@28211|Alphaproteobacteria 28211|Alphaproteobacteria L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions hupB - - ko:K03530 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding DYD2_k127_3919076_1 1380391.JIAS01000013_gene3694 8.781e-70 242.0 COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,2JRTT@204441|Rhodospirillales 204441|Rhodospirillales O maleylacetoacetate isomerase - - - - - - - - - - - - GST_N_3 DYD2_k127_3919076_0 1121405.dsmv_3453 2.924e-172 558.0 COG0747@1|root,COG0747@2|Bacteria,1MUPE@1224|Proteobacteria,42QHA@68525|delta/epsilon subdivisions,2WMFT@28221|Deltaproteobacteria,2MHYN@213118|Desulfobacterales 28221|Deltaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 DYD2_k127_3919076_3 575564.HMPREF0014_00725 4.266e-13 70.0 COG0583@1|root,COG0583@2|Bacteria,1QYAP@1224|Proteobacteria,1RYE8@1236|Gammaproteobacteria,3NK74@468|Moraxellaceae 1236|Gammaproteobacteria K LysR substrate binding domain - - - ko:K21699 - - - - ko00000,ko03000 - - - HTH_1,LysR_substrate DYD2_k127_3921675_1 1151122.AQYD01000007_gene1117 4.021e-08 64.0 COG0715@1|root,COG0715@2|Bacteria,2HH8J@201174|Actinobacteria 201174|Actinobacteria P ABC-type nitrate sulfonate bicarbonate transport - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 DYD2_k127_3921675_0 118161.KB235922_gene1823 5.135e-23 99.0 COG2251@1|root,COG2251@2|Bacteria,1G03D@1117|Cyanobacteria,3VI7J@52604|Pleurocapsales 1117|Cyanobacteria S TIGRFAM RecB family nuclease - - - - - - - - - - - - Cas_Cas4,DUF4332,RNase_H_2 DYD2_k127_3924129_0 1131269.AQVV01000025_gene2327 2.348e-42 170.0 COG1262@1|root,COG1262@2|Bacteria 2|Bacteria T PFAM Formylglycine-generating sulfatase enzyme - - 1.14.99.50 ko:K18912 ko00340,map00340 - R11013 RC03323,RC03324 ko00000,ko00001,ko01000 - - - FGE-sulfatase,HTH_31 DYD2_k127_3925788_0 243231.GSU0099 1.119e-91 306.0 COG1100@1|root,COG1100@2|Bacteria,1R6NS@1224|Proteobacteria,42NIX@68525|delta/epsilon subdivisions,2WJ44@28221|Deltaproteobacteria 28221|Deltaproteobacteria S ADP-ribosylation factor family mglA - - ko:K06883 - - - - ko00000 - - - Arf,Ras DYD2_k127_3925788_2 69014.TK2214 1.13e-12 76.0 COG0456@1|root,arCOG00833@2157|Archaea,2Y0G0@28890|Euryarchaeota,2432R@183968|Thermococci 183968|Thermococci K Acetyltransferase (GNAT) domain - - 2.3.1.128 ko:K03789 - - - - ko00000,ko01000,ko03009 - - - Acetyltransf_1 DYD2_k127_3925788_1 1304284.L21TH_1272 1.379e-87 297.0 COG0809@1|root,COG0809@2|Bacteria,1TPKD@1239|Firmicutes,247NT@186801|Clostridia,36E77@31979|Clostridiaceae 186801|Clostridia J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA - 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth DYD2_k127_3933529_5 204669.Acid345_4424 2.854e-42 158.0 COG0190@1|root,COG0190@2|Bacteria,3Y2IN@57723|Acidobacteria,2JIT2@204432|Acidobacteriia 204432|Acidobacteriia F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate folD - 1.5.1.5,3.5.4.9 ko:K01491 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R01220,R01655 RC00202,RC00578 ko00000,ko00001,ko00002,ko01000 - - - THF_DHG_CYH,THF_DHG_CYH_C DYD2_k127_3933529_4 1340493.JNIF01000003_gene4636 7.54e-47 175.0 COG0237@1|root,COG0237@2|Bacteria,3Y4R2@57723|Acidobacteria 57723|Acidobacteria H Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A coaE - 2.7.1.24 ko:K00859 ko00770,ko01100,map00770,map01100 M00120 R00130 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - CoaE DYD2_k127_3933529_3 1183438.GKIL_1125 1.557e-74 272.0 COG4166@1|root,COG4166@2|Bacteria,1GR16@1117|Cyanobacteria 1117|Cyanobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - ko:K15580 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - SBP_bac_5 DYD2_k127_3933529_1 1183438.GKIL_1125 2.362e-102 357.0 COG4166@1|root,COG4166@2|Bacteria,1GR16@1117|Cyanobacteria 1117|Cyanobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - ko:K15580 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - SBP_bac_5 DYD2_k127_3933529_2 343509.SG1374 1.518e-88 305.0 COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,1RNJ1@1236|Gammaproteobacteria 1236|Gammaproteobacteria P ABC-type dipeptide oligopeptide nickel transport systems, permease components oppB GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0022857,GO:0051179,GO:0051234,GO:0055085 - ko:K15581 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - BPD_transp_1 DYD2_k127_3933529_0 251221.35214698 2.629e-103 347.0 COG1173@1|root,COG1173@2|Bacteria,1G0CD@1117|Cyanobacteria 1117|Cyanobacteria P 'ABC-type dipeptide oligopeptide nickel transport appC - - ko:K02034,ko:K15582 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00239,M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - BPD_transp_1,OppC_N DYD2_k127_3940708_1 880072.Desac_1405 6.604e-30 121.0 COG0382@1|root,COG0382@2|Bacteria,1MV4Q@1224|Proteobacteria,42MXH@68525|delta/epsilon subdivisions,2WK8E@28221|Deltaproteobacteria,2MQDP@213462|Syntrophobacterales 28221|Deltaproteobacteria H PFAM UbiA prenyltransferase ubiA - 2.5.1.39 ko:K03179 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R05000,R05615 RC00209,RC02895 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA DYD2_k127_3940708_0 526227.Mesil_1816 8.836e-125 411.0 COG1404@1|root,COG1404@2|Bacteria,1WIDU@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus O peptidase S8 and S53, subtilisin, kexin, sedolisin - - 3.4.21.111 ko:K20754 - - - - ko00000,ko01000,ko01002 - - - Inhibitor_I9,Peptidase_S8 DYD2_k127_3940708_2 671143.DAMO_3120 2.716e-26 110.0 COG3668@1|root,COG3668@2|Bacteria 2|Bacteria D Plasmid stabilization system - - - - - - - - - - - - ParE_toxin DYD2_k127_3942448_4 118168.MC7420_463 1.12e-11 64.0 COG1232@1|root,COG1232@2|Bacteria,1G05M@1117|Cyanobacteria,1H8M6@1150|Oscillatoriales 1117|Cyanobacteria H Protoporphyrinogen oxidase - - - - - - - - - - - - Amino_oxidase DYD2_k127_3942448_3 886293.Sinac_5556 1.018e-45 169.0 COG1232@1|root,COG1232@2|Bacteria,2IYF5@203682|Planctomycetes 203682|Planctomycetes H Flavin containing amine oxidoreductase - - - - - - - - - - - - Amino_oxidase DYD2_k127_3942448_0 861299.J421_2420 1.066e-78 286.0 COG3379@1|root,COG3379@2|Bacteria 2|Bacteria S Type I phosphodiesterase / nucleotide pyrophosphatase - - - - - - - - - - - - Phosphodiest DYD2_k127_3942448_2 1192034.CAP_7241 2.543e-53 207.0 COG1541@1|root,COG1541@2|Bacteria,1MV1W@1224|Proteobacteria,42PY9@68525|delta/epsilon subdivisions,2WMGG@28221|Deltaproteobacteria 28221|Deltaproteobacteria H coenzyme F390 - - 6.2.1.30 ko:K01912 ko00360,ko01120,ko05111,map00360,map01120,map05111 - R02539 RC00004,RC00014 ko00000,ko00001,ko01000 - - - AMP-binding DYD2_k127_3942448_1 1123276.KB893264_gene4598 1.128e-75 269.0 COG2133@1|root,COG3386@1|root,COG4386@1|root,COG2133@2|Bacteria,COG3386@2|Bacteria,COG4386@2|Bacteria,4PNUT@976|Bacteroidetes,47YJ9@768503|Cytophagia 976|Bacteroidetes G Pkd domain containing protein - - - - - - - - - - - - NHL DYD2_k127_3952081_1 1121430.JMLG01000002_gene1142 3.43e-93 314.0 COG0414@1|root,COG0414@2|Bacteria,1TP7A@1239|Firmicutes,248AN@186801|Clostridia,26011@186807|Peptococcaceae 186801|Clostridia H Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate panC - 6.3.2.1 ko:K01918 ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110 M00119 R02473 RC00096,RC00141 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_ligase DYD2_k127_3952081_2 485913.Krac_2433 2.961e-61 216.0 COG2080@1|root,COG2080@2|Bacteria,2G6NT@200795|Chloroflexi 200795|Chloroflexi C 2Fe-2S -binding domain protein - - 1.2.5.3 ko:K03518 - - R11168 RC02800 ko00000,ko01000 - - - Fer2,Fer2_2 DYD2_k127_3952081_0 1382306.JNIM01000001_gene1023 3.485e-304 953.0 COG1529@1|root,COG1529@2|Bacteria 2|Bacteria C xanthine dehydrogenase activity hcrA - 1.3.7.9 ko:K04108 ko00362,ko00627,ko01100,ko01120,ko01220,map00362,map00627,map01100,map01120,map01220 - R05316 RC00490 ko00000,ko00001,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_3957611_2 1300345.LF41_2077 9.012e-39 149.0 COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,1RQUD@1236|Gammaproteobacteria,1X7P8@135614|Xanthomonadales 135614|Xanthomonadales S MgtC family - - - ko:K07507 - - - - ko00000,ko02000 9.B.20 - - MgtC DYD2_k127_3957611_0 1340493.JNIF01000003_gene1807 4.756e-132 428.0 COG0113@1|root,COG0113@2|Bacteria,3Y2VK@57723|Acidobacteria 57723|Acidobacteria H PFAM delta-aminolevulinic acid dehydratase - - 4.2.1.24 ko:K01698 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00036 RC00918,RC01781 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ALAD DYD2_k127_3957611_1 290397.Adeh_3744 1.826e-68 235.0 COG2050@1|root,COG2050@2|Bacteria,1RBPE@1224|Proteobacteria,42RKY@68525|delta/epsilon subdivisions,2WNSM@28221|Deltaproteobacteria,2YXUH@29|Myxococcales 28221|Deltaproteobacteria Q PFAM thioesterase superfamily - - - - - - - - - - - - 4HBT DYD2_k127_3959735_0 1267535.KB906767_gene1046 1.368e-50 192.0 COG2885@1|root,COG2885@2|Bacteria 2|Bacteria M chlorophyll binding - - - - - - - - - - - - CarboxypepD_reg,OmpA,PD40 DYD2_k127_3959735_3 479434.Sthe_0464 5.182e-12 73.0 COG0750@1|root,COG0750@2|Bacteria,2G6HV@200795|Chloroflexi,27XS5@189775|Thermomicrobia 189775|Thermomicrobia M Domain present in PSD-95, Dlg, and ZO-1/2. - - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ_2,Peptidase_M50 DYD2_k127_3959735_2 530564.Psta_2264 5.965e-15 81.0 COG0792@1|root,COG0792@2|Bacteria,2J0GX@203682|Planctomycetes 203682|Planctomycetes L Belongs to the UPF0102 family - - - ko:K07460 - - - - ko00000 - - - UPF0102 DYD2_k127_3959735_1 1547437.LL06_08345 6.484e-24 107.0 COG1917@1|root,COG1917@2|Bacteria,1N73J@1224|Proteobacteria 1224|Proteobacteria S Cupin 2, conserved barrel domain protein - - - - - - - - - - - - - DYD2_k127_3960137_2 1382304.JNIL01000001_gene1507 1.441e-52 196.0 COG1319@1|root,COG1319@2|Bacteria,1TQA5@1239|Firmicutes,4HJ3P@91061|Bacilli 91061|Bacilli C COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM homologs pucC - 1.17.1.4,1.2.5.3 ko:K00087,ko:K03519 ko00230,ko01100,ko01120,map00230,map01100,map01120 M00546 R01768,R02103,R11168 RC00143,RC02800 ko00000,ko00001,ko00002,ko01000 - - - CO_deh_flav_C,FAD_binding_5 DYD2_k127_3960137_0 309801.trd_A0069 9.003e-180 589.0 COG1529@1|root,COG1529@2|Bacteria,2G65D@200795|Chloroflexi,27Y2Q@189775|Thermomicrobia 189775|Thermomicrobia C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - - - - - - - - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_3960137_3 985054.JQEZ01000001_gene2928 1.931e-50 183.0 COG2080@1|root,COG2080@2|Bacteria,1MWA6@1224|Proteobacteria,2TS73@28211|Alphaproteobacteria,4NDS8@97050|Ruegeria 28211|Alphaproteobacteria C [2Fe-2S] binding domain - - - - - - - - - - - - Fer2,Fer2_2 DYD2_k127_3960137_4 443152.MDG893_15467 2.867e-47 183.0 COG3181@1|root,COG3181@2|Bacteria,1RJGP@1224|Proteobacteria,1SZ9G@1236|Gammaproteobacteria,46CCT@72275|Alteromonadaceae 1224|Proteobacteria S protein conserved in bacteria - - - - - - - - - - - - TctC DYD2_k127_3960137_1 333138.LQ50_02505 1.485e-61 225.0 COG4638@1|root,COG4638@2|Bacteria,1UYZZ@1239|Firmicutes,4I68U@91061|Bacilli,1ZDPN@1386|Bacillus 91061|Bacilli P Rieske [2Fe-2S] domain - - - - - - - - - - - - Rieske DYD2_k127_3960137_5 1297863.APJF01000026_gene3706 1.291e-08 61.0 COG2159@1|root,COG2159@2|Bacteria,1N0C7@1224|Proteobacteria,2TRXY@28211|Alphaproteobacteria,3JQNV@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria P Amidohydrolase MA20_19310 - - ko:K07045 - - - - ko00000 - - - Amidohydro_2 DYD2_k127_3965680_0 1276920.ADIAG_03727 9.243e-19 95.0 COG0500@1|root,COG2226@2|Bacteria,2H945@201174|Actinobacteria 201174|Actinobacteria Q Methyltransferase domain - - - - - - - - - - - - - DYD2_k127_3970878_1 204669.Acid345_1391 3.916e-176 558.0 COG2805@1|root,COG2805@2|Bacteria,3Y316@57723|Acidobacteria,2JIT4@204432|Acidobacteriia 204432|Acidobacteriia NU Type II/IV secretion system protein - - - ko:K02669 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE DYD2_k127_3970878_0 903818.KI912268_gene3150 2.204e-214 677.0 COG2804@1|root,COG2804@2|Bacteria,3Y2IS@57723|Acidobacteria 57723|Acidobacteria NU Type II secretion system (T2SS), protein E, N-terminal domain - - - ko:K02454 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSE,T2SSE_N DYD2_k127_3971518_1 679926.Mpet_1167 2.722e-28 114.0 COG1598@1|root,arCOG02411@2157|Archaea,2Y1KD@28890|Euryarchaeota,2NB9U@224756|Methanomicrobia 224756|Methanomicrobia S HicB_like antitoxin of bacterial toxin-antitoxin system - - - - - - - - - - - - HicB_lk_antitox DYD2_k127_3971518_2 449447.MAE_09140 2.259e-18 86.0 COG1724@1|root,COG1724@2|Bacteria,1G8K9@1117|Cyanobacteria 1117|Cyanobacteria N PFAM YcfA-like protein - - - - - - - - - - - - HicA_toxin DYD2_k127_3971518_0 261292.Nit79A3_1686 6.051e-67 236.0 2EJ79@1|root,33CYD@2|Bacteria,1NNFN@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_3973574_3 658086.HMPREF0994_02305 4.425e-11 67.0 COG2132@1|root,COG2132@2|Bacteria,1TQJK@1239|Firmicutes,24DI6@186801|Clostridia 186801|Clostridia Q PFAM multicopper oxidase - - 1.16.3.3 ko:K22348 - - - - ko00000,ko01000 - - - Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3 DYD2_k127_3973574_2 1283300.ATXB01000002_gene2888 8.76e-37 149.0 2DP87@1|root,330Z8@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_3973574_1 344747.PM8797T_28544 2.435e-96 340.0 COG3055@1|root,COG3055@2|Bacteria 2|Bacteria G Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - - - - - - - - - - CBM_6,CHB_HEX_C_1,DUF1929,Kelch_1,Kelch_4,Kelch_5,Laminin_G_3,Malectin,Peptidase_C1,Peptidase_S8,SLH DYD2_k127_3973574_0 639030.JHVA01000001_gene20 1.214e-100 346.0 COG1629@1|root,COG4771@2|Bacteria,3Y6Z9@57723|Acidobacteria,2JKTJ@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_3980013_3 330214.NIDE3498 1.514e-07 56.0 COG2203@1|root,COG3604@1|root,COG2203@2|Bacteria,COG3604@2|Bacteria 2|Bacteria KT transcription factor binding fhlA GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - ko:K02584,ko:K12146,ko:K12266,ko:K15836,ko:K21009 ko02020,ko02025,ko05132,map02020,map02025,map05132 - - - ko00000,ko00001,ko03000 - - - GAF,GAF_2,GAF_3,HTH_8,Sigma54_activat DYD2_k127_3980013_1 1198452.Jab_2c30330 4.216e-12 68.0 COG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,2VSHX@28216|Betaproteobacteria,474GR@75682|Oxalobacteraceae 28216|Betaproteobacteria O Belongs to the thioredoxin family trxA - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin DYD2_k127_3980013_0 311403.Arad_7168 8.313e-115 379.0 COG2936@1|root,COG2936@2|Bacteria,1MVA8@1224|Proteobacteria,2TU0R@28211|Alphaproteobacteria,4B7Q4@82115|Rhizobiaceae 28211|Alphaproteobacteria S X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - ko:K06978 - - - - ko00000 - - - PepX_C,Peptidase_S15 DYD2_k127_3994768_2 1300345.LF41_3143 9.607e-06 47.0 COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,1RN6J@1236|Gammaproteobacteria,1X393@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the cysteine synthase cystathionine beta- synthase family - - - - - - - - - - - - PALP DYD2_k127_3994768_0 1499967.BAYZ01000009_gene5298 7.667e-282 895.0 COG0587@1|root,COG0587@2|Bacteria,2NNVY@2323|unclassified Bacteria 2|Bacteria L DNA polymerase dnaE GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 ko:K02337 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,RNase_T,tRNA_anti-codon DYD2_k127_3994768_1 1125863.JAFN01000001_gene1801 2.545e-112 366.0 COG0519@1|root,COG0519@2|Bacteria,1MU2A@1224|Proteobacteria,42M0I@68525|delta/epsilon subdivisions,2WJ6D@28221|Deltaproteobacteria 28221|Deltaproteobacteria F Catalyzes the synthesis of GMP from XMP guaA GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase,GMP_synt_C,NAD_synthase,tRNA_Me_trans DYD2_k127_3995290_0 671143.DAMO_2531 1.553e-103 347.0 COG0533@1|root,COG0533@2|Bacteria,2NNXP@2323|unclassified Bacteria 2|Bacteria O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction tsaD GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 ko:K01409,ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 R10648 RC00070,RC00416 ko00000,ko00001,ko00002,ko01000,ko02044,ko03016 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - Peptidase_M22 DYD2_k127_3995290_2 743719.PaelaDRAFT_2664 1.331e-66 241.0 COG0079@1|root,COG0079@2|Bacteria,1TPUV@1239|Firmicutes,4HA1H@91061|Bacilli,26S6U@186822|Paenibacillaceae 91061|Bacilli E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 DYD2_k127_3995290_3 240015.ACP_2906 3.24e-45 170.0 COG0742@1|root,COG0742@2|Bacteria,3Y4K0@57723|Acidobacteria,2JJDW@204432|Acidobacteriia 204432|Acidobacteriia L Conserved hypothetical protein 95 - - - - - - - - - - - - Cons_hypoth95 DYD2_k127_3995290_1 1144275.COCOR_04693 2.215e-90 305.0 COG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,42NF8@68525|delta/epsilon subdivisions,2WKBA@28221|Deltaproteobacteria,2YXV4@29|Myxococcales 28221|Deltaproteobacteria L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) recG - 3.6.4.12 ko:K03655 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,RecG_wedge DYD2_k127_3998977_3 523850.TON_1057 1.114e-11 69.0 COG1030@1|root,arCOG01910@2157|Archaea,2XW1R@28890|Euryarchaeota,242U5@183968|Thermococci 183968|Thermococci O NfeD-like C-terminal, partner-binding - - - ko:K07403 - - - - ko00000 - - - CLP_protease,NfeD,SDH_sah DYD2_k127_3998977_4 1307759.JOMJ01000004_gene2483 1.345e-06 61.0 COG0457@1|root,COG0457@2|Bacteria,1MXMD@1224|Proteobacteria,42NZK@68525|delta/epsilon subdivisions,2WIY5@28221|Deltaproteobacteria,2MABK@213115|Desulfovibrionales 28221|Deltaproteobacteria NU Tetratricopeptide TPR_2 repeat protein - - - - - - - - - - - - TPR_1,TPR_14,TPR_16,TPR_19,TPR_2,TPR_6,TPR_8,zinc_ribbon_4 DYD2_k127_3998977_1 1287276.X752_29340 2.351e-35 141.0 COG0484@1|root,COG0484@2|Bacteria,1RHHJ@1224|Proteobacteria,2UEFM@28211|Alphaproteobacteria 28211|Alphaproteobacteria O heat shock protein DnaJ - - - ko:K05516 - - - - ko00000,ko03036,ko03110 - - - DnaJ DYD2_k127_3998977_0 926550.CLDAP_38300 1.03e-227 718.0 COG1960@1|root,COG1960@2|Bacteria,2G820@200795|Chloroflexi 200795|Chloroflexi C Acyl-CoA dehydrogenase, middle domain - - - ko:K09456 - - - - ko00000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M DYD2_k127_3998977_2 1380394.JADL01000011_gene3927 2.278e-25 108.0 COG1633@1|root,COG1633@2|Bacteria,1RGZG@1224|Proteobacteria,2UC9G@28211|Alphaproteobacteria,2JUTX@204441|Rhodospirillales 204441|Rhodospirillales S Domain of unknown function (DUF2383) - - - - - - - - - - - - DUF2383 DYD2_k127_4002628_5 234267.Acid_3938 3.616e-07 55.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria 2|Bacteria U Involved in the tonB-independent uptake of proteins - - 2.7.11.1 ko:K08884,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PD40,Pkinase,WD40 DYD2_k127_4002628_0 1123508.JH636452_gene7045 8.562e-102 346.0 COG2807@1|root,COG2807@2|Bacteria 2|Bacteria P transmembrane transport - - - - - - - - - - - - MFS_1 DYD2_k127_4002628_4 756272.Plabr_0100 3.323e-21 100.0 2EPF9@1|root,33H1X@2|Bacteria,2J19C@203682|Planctomycetes 203682|Planctomycetes - - - - - - - - - - - - - - - DYD2_k127_4002628_2 234267.Acid_5940 6.841e-32 128.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria,3Y2PK@57723|Acidobacteria 57723|Acidobacteria KLTU WD40 domain protein beta Propeller - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase DYD2_k127_4002628_1 1121920.AUAU01000006_gene330 1.424e-37 147.0 COG0457@1|root,COG0515@1|root,COG5616@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,COG5616@2|Bacteria,3Y6VR@57723|Acidobacteria 57723|Acidobacteria KLT Protein tyrosine kinase - - 2.7.11.1 ko:K08282,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase DYD2_k127_40059_2 1382359.JIAL01000001_gene1320 9.344e-101 334.0 COG0457@1|root,COG0457@2|Bacteria,3Y2M9@57723|Acidobacteria,2JMD8@204432|Acidobacteriia 204432|Acidobacteriia S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_40059_4 1289135.A966_08239 3.022e-10 63.0 COG1109@1|root,COG1109@2|Bacteria,2J5GY@203691|Spirochaetes 203691|Spirochaetes G Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II - - 5.4.2.8 ko:K01840 ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130 M00114 R01818 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV DYD2_k127_40059_0 1499967.BAYZ01000182_gene4451 1.101e-119 395.0 COG1109@1|root,COG1109@2|Bacteria,2NNM3@2323|unclassified Bacteria 2|Bacteria G Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III glmM - 5.4.2.10,5.4.2.2,5.4.2.8 ko:K01840,ko:K03431,ko:K15778 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114 R00959,R01057,R01818,R02060,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV DYD2_k127_40059_1 1499967.BAYZ01000182_gene4451 1.711e-108 366.0 COG1109@1|root,COG1109@2|Bacteria,2NNM3@2323|unclassified Bacteria 2|Bacteria G Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III glmM - 5.4.2.10,5.4.2.2,5.4.2.8 ko:K01840,ko:K03431,ko:K15778 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114 R00959,R01057,R01818,R02060,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV DYD2_k127_40059_3 1408473.JHXO01000009_gene3462 4.672e-60 214.0 COG3394@1|root,COG3394@2|Bacteria,4PNAT@976|Bacteroidetes,2G14M@200643|Bacteroidia 976|Bacteroidetes G YdjC-like protein - - 3.5.1.105 ko:K03478 - - - - ko00000,ko01000 - - - YdjC DYD2_k127_4010498_1 682795.AciX8_0404 9.793e-19 97.0 COG2304@1|root,COG3266@1|root,COG2304@2|Bacteria,COG3266@2|Bacteria,3Y30G@57723|Acidobacteria,2JIK2@204432|Acidobacteriia 204432|Acidobacteriia S PFAM von Willebrand factor type A - - - - - - - - - - - - VWA,VWA_2,VWA_3 DYD2_k127_4010498_0 234267.Acid_0913 1.39e-47 176.0 COG0321@1|root,COG0321@2|Bacteria,3Y448@57723|Acidobacteria 57723|Acidobacteria H Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate lipB - 2.3.1.181 ko:K03801 ko00785,ko01100,map00785,map01100 - R07766,R07769 RC00039,RC00992,RC02867 ko00000,ko00001,ko01000 - - - BPL_LplA_LipB,NUDIX DYD2_k127_401812_0 1487953.JMKF01000073_gene3643 6.16e-286 891.0 COG1506@1|root,COG1506@2|Bacteria,1G200@1117|Cyanobacteria,1H8T3@1150|Oscillatoriales 1117|Cyanobacteria E PFAM Prolyl oligopeptidase family dap2 - - - - - - - - - - - PD40,Peptidase_S9 DYD2_k127_401812_1 234267.Acid_4698 7.028e-168 548.0 COG0405@1|root,COG0405@2|Bacteria,3Y6KV@57723|Acidobacteria 57723|Acidobacteria M Gamma-glutamyltranspeptidase - - 2.3.2.2,3.4.19.13 ko:K00681 ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100 - R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935 RC00064,RC00090,RC00096 ko00000,ko00001,ko01000,ko01002 - - - G_glu_transpept DYD2_k127_401812_5 1445613.JALM01000005_gene1186 1.013e-24 108.0 COG0346@1|root,COG0346@2|Bacteria,2H5Y5@201174|Actinobacteria,4EBMJ@85010|Pseudonocardiales 201174|Actinobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD2_k127_401812_4 1254432.SCE1572_28815 4.236e-30 131.0 2E0EH@1|root,2ZZNI@2|Bacteria,1Q8YZ@1224|Proteobacteria,438YN@68525|delta/epsilon subdivisions,2X441@28221|Deltaproteobacteria,2YY76@29|Myxococcales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_401812_2 926549.KI421517_gene1084 4.667e-155 500.0 28JXC@1|root,2Z8EX@2|Bacteria,4NF7D@976|Bacteroidetes,47M9Z@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_401812_3 99598.Cal7507_6086 1.691e-79 272.0 COG3548@1|root,COG3548@2|Bacteria,1GKP7@1117|Cyanobacteria,1HRK3@1161|Nostocales 1117|Cyanobacteria S Protein of unknown function (DUF1211) - - - - - - - - - - - - DUF1211 DYD2_k127_4019785_0 1254432.SCE1572_33560 5.404e-38 162.0 COG1858@1|root,COG3391@1|root,COG1858@2|Bacteria,COG3391@2|Bacteria,1R66T@1224|Proteobacteria,439FZ@68525|delta/epsilon subdivisions,2X4RS@28221|Deltaproteobacteria,2YZGC@29|Myxococcales 28221|Deltaproteobacteria G 6-phosphogluconolactonase activity - - - - - - - - - - - - Lactonase DYD2_k127_4024272_0 667014.Thein_0206 3.099e-135 444.0 COG2262@1|root,COG2262@2|Bacteria,2GH9H@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis hflX - - ko:K03665 - - - - ko00000,ko03009 - - - GTP-bdg_M,GTP-bdg_N,MMR_HSR1 DYD2_k127_4032442_0 383372.Rcas_3047 1.006e-15 81.0 COG1716@1|root,COG1716@2|Bacteria,2G8U3@200795|Chloroflexi,375MN@32061|Chloroflexia 32061|Chloroflexia T PFAM Forkhead-associated protein - - - - - - - - - - - - DZR,FHA DYD2_k127_4032442_1 1242864.D187_004215 3.708e-14 82.0 COG1716@1|root,COG2114@1|root,COG2203@1|root,COG1716@2|Bacteria,COG2114@2|Bacteria,COG2203@2|Bacteria,1RAHZ@1224|Proteobacteria,42UGY@68525|delta/epsilon subdivisions,2WQPI@28221|Deltaproteobacteria,2YUG9@29|Myxococcales 28221|Deltaproteobacteria T Adenylyl- / guanylyl cyclase, catalytic domain - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - FHA,GAF,GAF_2,Guanylate_cyc DYD2_k127_4036793_0 234267.Acid_2365 1.698e-63 242.0 COG0841@1|root,COG1538@1|root,COG0841@2|Bacteria,COG1538@2|Bacteria,3Y6DS@57723|Acidobacteria 57723|Acidobacteria V AcrB/AcrD/AcrF family - - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran,OEP DYD2_k127_4036793_1 204669.Acid345_2541 1.393e-44 165.0 COG0057@1|root,COG0057@2|Bacteria,3Y2QC@57723|Acidobacteria,2JI8H@204432|Acidobacteriia 204432|Acidobacteriia G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family - - 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N DYD2_k127_4044355_0 234267.Acid_1285 4.662e-180 576.0 COG0317@1|root,COG0317@2|Bacteria,3Y38Q@57723|Acidobacteria 57723|Acidobacteria KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance - - 2.7.6.5 ko:K00951 ko00230,map00230 - R00429 RC00002,RC00078 ko00000,ko00001,ko01000 - - - ACT_4,HD_4,RelA_SpoT,TGS DYD2_k127_4044355_4 204669.Acid345_0152 4.128e-16 88.0 COG0457@1|root,COG0457@2|Bacteria,3Y3N5@57723|Acidobacteria,2JISD@204432|Acidobacteriia 204432|Acidobacteriia S Tetratricopeptide repeat - - - - - - - - - - - - TPR_2,TPR_8 DYD2_k127_4044355_3 1340493.JNIF01000003_gene1846 1.633e-16 85.0 COG0848@1|root,COG0848@2|Bacteria,3Y5AP@57723|Acidobacteria 57723|Acidobacteria U PFAM Biopolymer transport protein ExbD TolR - - - ko:K03559,ko:K03560 - - - - ko00000,ko02000 1.A.30.2.1,1.A.30.2.2 - - ExbD DYD2_k127_4044355_1 204669.Acid345_0150 2.018e-24 108.0 COG0848@1|root,COG0848@2|Bacteria,3Y4TE@57723|Acidobacteria,2JJKY@204432|Acidobacteriia 204432|Acidobacteriia U PFAM Biopolymer transport protein ExbD TolR - - - ko:K03559,ko:K03560 - - - - ko00000,ko02000 1.A.30.2.1,1.A.30.2.2 - - ExbD DYD2_k127_4044355_2 234267.Acid_1281 5.392e-23 99.0 COG0811@1|root,COG0811@2|Bacteria,3Y2M4@57723|Acidobacteria 57723|Acidobacteria U MotA TolQ ExbB proton channel - - - ko:K03561,ko:K03562 ko01120,map01120 - - - ko00000,ko02000 1.A.30.2.1,1.A.30.2.2 - - MotA_ExbB DYD2_k127_404485_1 1267533.KB906735_gene4740 2.475e-55 198.0 29CZM@1|root,2ZZXN@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_404485_0 857087.Metme_0626 7.986e-74 258.0 COG3193@1|root,COG3193@2|Bacteria,1R215@1224|Proteobacteria,1S4R1@1236|Gammaproteobacteria,1XF9H@135618|Methylococcales 135618|Methylococcales S Haem-degrading - - - - - - - - - - - - Haem_degrading DYD2_k127_404485_2 1121924.ATWH01000002_gene3739 2.318e-41 158.0 COG3677@1|root,COG3677@2|Bacteria,2IF2C@201174|Actinobacteria,4FTAG@85023|Microbacteriaceae 201174|Actinobacteria L ISXO2-like transposase domain - - - - - - - - - - - - DDE_Tnp_IS1595 DYD2_k127_4054691_1 314230.DSM3645_20627 2.269e-123 412.0 COG1520@1|root,COG1520@2|Bacteria,2IWR8@203682|Planctomycetes 203682|Planctomycetes S beta-propeller repeat - - - - - - - - - - - - PQQ_2 DYD2_k127_4054691_0 1267534.KB906758_gene2503 9.564e-144 462.0 COG0500@1|root,COG2226@2|Bacteria,3Y89E@57723|Acidobacteria,2JNTT@204432|Acidobacteriia 204432|Acidobacteriia Q O-methyltransferase - - - - - - - - - - - - Dimerisation2,Methyltransf_2 DYD2_k127_4073651_3 1121920.AUAU01000009_gene1940 6.891e-09 64.0 COG2165@1|root,COG2165@2|Bacteria,3Y9CD@57723|Acidobacteria 57723|Acidobacteria NU general secretion pathway protein - - - - - - - - - - - - - DYD2_k127_4073651_1 243231.GSU1197 1.805e-49 182.0 COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,42RJX@68525|delta/epsilon subdivisions,2WP0F@28221|Deltaproteobacteria,43SHY@69541|Desulfuromonadales 28221|Deltaproteobacteria J Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide trmL - 2.1.1.207 ko:K03216 - - - - ko00000,ko01000,ko03016 - - - SpoU_methylase DYD2_k127_4073651_0 1267535.KB906767_gene2350 3.896e-259 811.0 COG1217@1|root,COG1217@2|Bacteria,3Y33Q@57723|Acidobacteria,2JIIC@204432|Acidobacteriia 204432|Acidobacteriia T GTP-binding protein TypA - - - ko:K06207 - - - - ko00000 - - - EFG_C,GTP_EFTU,GTP_EFTU_D2 DYD2_k127_4073651_2 1307759.JOMJ01000003_gene443 1.065e-32 136.0 COG0352@1|root,COG0352@2|Bacteria,1RDSU@1224|Proteobacteria,42R5Z@68525|delta/epsilon subdivisions,2WMPN@28221|Deltaproteobacteria,2MAQ1@213115|Desulfovibrionales 28221|Deltaproteobacteria H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) thiE - 2.5.1.3 ko:K00788 ko00730,ko01100,map00730,map01100 M00127 R03223,R10712 RC00224,RC03255,RC03397 ko00000,ko00001,ko00002,ko01000 - - - TMP-TENI DYD2_k127_4089296_0 1382359.JIAL01000001_gene2082 5.799e-178 566.0 COG2986@1|root,COG2986@2|Bacteria,3Y3YW@57723|Acidobacteria,2JIK6@204432|Acidobacteriia 204432|Acidobacteriia E Aromatic amino acid lyase hutH - 4.3.1.3 ko:K01745 ko00340,ko01100,map00340,map01100 M00045 R01168 RC00361 ko00000,ko00001,ko00002,ko01000 - - - Lyase_aromatic DYD2_k127_4089296_1 861299.J421_3379 2.874e-11 68.0 COG3809@1|root,COG3809@2|Bacteria 2|Bacteria S Transcription factor zinc-finger - - - ko:K09981 - - - - ko00000 - - - Rhomboid,zf-TFIIB DYD2_k127_4090408_3 386456.JQKN01000011_gene815 4.341e-24 113.0 COG2239@1|root,arCOG00634@2157|Archaea,2XWIB@28890|Euryarchaeota,23PEC@183925|Methanobacteria 183925|Methanobacteria P MgtE intracellular N domain - - - - - - - - - - - - CBS,MgtE_N,PRC DYD2_k127_4090408_1 497964.CfE428DRAFT_2318 7.942e-102 340.0 COG0664@1|root,COG4420@1|root,COG0664@2|Bacteria,COG4420@2|Bacteria,46T5T@74201|Verrucomicrobia 74201|Verrucomicrobia K Protein of unknown function (DUF1003) - - - - - - - - - - - - DUF1003,cNMP_binding DYD2_k127_4090408_2 1499967.BAYZ01000012_gene2485 1.31e-31 127.0 COG4577@1|root,COG4577@2|Bacteria,2NRBW@2323|unclassified Bacteria 2|Bacteria CQ COGs COG4577 Carbon dioxide concentrating mechanism carboxysome shell protein - - - ko:K04027 - - - - ko00000 - - - BMC DYD2_k127_4090408_0 485916.Dtox_3284 5.62e-183 582.0 COG2848@1|root,COG2848@2|Bacteria,1TQG8@1239|Firmicutes,247K4@186801|Clostridia,260TZ@186807|Peptococcaceae 186801|Clostridia S UPF0210 protein - - - ko:K09157 - - - - ko00000 - - - DUF711 DYD2_k127_4092346_0 234267.Acid_2848 4.489e-95 322.0 COG1044@1|root,COG1044@2|Bacteria,3Y6ZT@57723|Acidobacteria 57723|Acidobacteria M UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD - - 2.3.1.191 ko:K02536 ko00540,ko01100,map00540,map01100 M00060 R04550 RC00039,RC00166 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hexapep,LpxD DYD2_k127_4092346_3 595537.Varpa_3039 0.0002224 46.0 COG2203@1|root,COG5002@1|root,COG2203@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2WHZ6@28216|Betaproteobacteria 28216|Betaproteobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - GAF,HATPase_c,HisKA,Response_reg DYD2_k127_4092346_1 1499967.BAYZ01000178_gene4651 4.782e-89 308.0 COG0763@1|root,COG0763@2|Bacteria,2NP10@2323|unclassified Bacteria 2|Bacteria I Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxB GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 ko:K00748 ko00540,ko01100,map00540,map01100 M00060 R04606 RC00005,RC00059 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT19 - LpxB DYD2_k127_4092346_2 1122604.JONR01000006_gene2579 1.52e-06 50.0 COG0457@1|root,COG0457@2|Bacteria,1QYB9@1224|Proteobacteria,1T3P6@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Tetratricopeptide repeat - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - TPR_1,TPR_2 DYD2_k127_4102356_1 1089548.KI783301_gene3026 9.95e-44 168.0 COG2133@1|root,COG2133@2|Bacteria,1TR38@1239|Firmicutes,4HBME@91061|Bacilli,3WFG3@539002|Bacillales incertae sedis 91061|Bacilli G Glucose / Sorbosone dehydrogenase gdhB - - - - - - - - - - - GSDH DYD2_k127_4102356_0 886293.Sinac_7530 6.561e-164 530.0 COG0265@1|root,COG0265@2|Bacteria 2|Bacteria O serine-type endopeptidase activity - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 DYD2_k127_4102356_6 1202768.JROF01000006_gene2450 2.329e-11 74.0 COG0697@1|root,arCOG00272@2157|Archaea,2XVSM@28890|Euryarchaeota,23S7J@183963|Halobacteria 183963|Halobacteria G COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - - - - - - - - - - EamA DYD2_k127_4102356_3 68570.DC74_988 3.104e-23 102.0 2BCA3@1|root,325V8@2|Bacteria,2HB4V@201174|Actinobacteria 201174|Actinobacteria S YCII-related domain - - - - - - - - - - - - YCII DYD2_k127_4102356_4 1120950.KB892757_gene6462 5.308e-20 99.0 COG3473@1|root,COG3473@2|Bacteria,2HRMA@201174|Actinobacteria,4DSII@85009|Propionibacteriales 201174|Actinobacteria Q Catalyzes the conversion of maleate to fumarate maiA - 5.2.1.1 ko:K01799 ko00650,ko00760,ko01120,map00650,map00760,map01120 M00622 R01087 RC00448 ko00000,ko00001,ko00002,ko01000 - - - Asp_Glu_race DYD2_k127_4102356_5 1449063.JMLS01000012_gene5551 4.769e-19 94.0 COG2259@1|root,COG2259@2|Bacteria,1V7TX@1239|Firmicutes,4HH6W@91061|Bacilli,275X9@186822|Paenibacillaceae 91061|Bacilli S DoxX mhqP - - ko:K15977 - - - - ko00000 - - - DoxX DYD2_k127_4102356_2 1458357.BG58_28140 1.123e-24 110.0 COG0527@1|root,COG0527@2|Bacteria,1REUY@1224|Proteobacteria,2VS69@28216|Betaproteobacteria,1K7HV@119060|Burkholderiaceae 28216|Betaproteobacteria E ACT domain - - - - - - - - - - - - ACT,ACT_6 DYD2_k127_410774_0 1306990.BARG01000030_gene3384 5.284e-81 280.0 COG3435@1|root,COG3435@2|Bacteria,2GKAE@201174|Actinobacteria 201174|Actinobacteria Q Pfam Cupin - - 1.13.11.38,1.13.11.4 ko:K00450,ko:K11948 ko00350,ko00624,ko01100,ko01120,map00350,map00624,map01100,map01120 - R02656,R07657 RC00764,RC00937 ko00000,ko00001,ko01000 - - - Cupin_2 DYD2_k127_410774_2 1304883.KI912532_gene1851 1.647e-06 58.0 COG5424@1|root,COG5424@2|Bacteria,1MW7G@1224|Proteobacteria,2VI0X@28216|Betaproteobacteria,2KUDW@206389|Rhodocyclales 206389|Rhodocyclales H Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ pqqC - 1.3.3.11 ko:K06137 - - - - ko00000,ko01000 - - - TENA_THI-4 DYD2_k127_410774_1 335543.Sfum_0899 1.053e-39 151.0 COG0490@1|root,COG0569@1|root,COG1226@1|root,COG0490@2|Bacteria,COG0569@2|Bacteria,COG1226@2|Bacteria,1R4J8@1224|Proteobacteria,42NKU@68525|delta/epsilon subdivisions,2WIRH@28221|Deltaproteobacteria,2MRD0@213462|Syntrophobacterales 28221|Deltaproteobacteria P Ion channel - - - - - - - - - - - - Ion_trans_2,TrkA_C,TrkA_N DYD2_k127_411032_1 1167006.UWK_00452 6.337e-99 332.0 COG1899@1|root,COG1899@2|Bacteria,1R3WQ@1224|Proteobacteria,42M57@68525|delta/epsilon subdivisions,2WJ6N@28221|Deltaproteobacteria,2MHW7@213118|Desulfobacterales 28221|Deltaproteobacteria O peptidyl-lysine modification to peptidyl-hypusine - - - - - - - - - - - - - DYD2_k127_411032_3 870187.Thini_3184 2.692e-07 53.0 COG4914@1|root,COG4914@2|Bacteria,1N1W1@1224|Proteobacteria,1ST82@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_411032_0 234267.Acid_7263 0.0 1236.0 COG0178@1|root,COG0178@2|Bacteria,3Y3G9@57723|Acidobacteria 57723|Acidobacteria L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran DYD2_k127_411032_2 1236973.JCM9157_1743 6.802e-38 151.0 COG0558@1|root,COG0558@2|Bacteria,1V6PJ@1239|Firmicutes,4HCEX@91061|Bacilli,1ZBJ2@1386|Bacillus 91061|Bacilli I Belongs to the CDP-alcohol phosphatidyltransferase class-I family pgsA GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576 2.7.8.5 ko:K00995 ko00564,ko01100,map00564,map01100 - R01801 RC00002,RC00017,RC02795 ko00000,ko00001,ko01000 - - iSB619.SA_RS06365 CDP-OH_P_transf DYD2_k127_411898_2 63737.Npun_R0239 2.173e-127 415.0 COG2520@1|root,COG2520@2|Bacteria 2|Bacteria J tRNA (guanine(37)-N(1))-methyltransferase activity - - - - - - - - - - - - Dimerisation2,Methyltransf_2 DYD2_k127_411898_3 485913.Krac_1224 2.126e-113 386.0 COG1680@1|root,COG1680@2|Bacteria,2G6QM@200795|Chloroflexi 2|Bacteria V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase DYD2_k127_411898_1 1340493.JNIF01000003_gene4071 4.199e-141 460.0 COG0520@1|root,COG0520@2|Bacteria,3Y4TH@57723|Acidobacteria 57723|Acidobacteria E Aminotransferase class-V - - - - - - - - - - - - Aminotran_5 DYD2_k127_411898_0 414684.RC1_3136 1.145e-165 538.0 COG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,2TTRU@28211|Alphaproteobacteria,2JRAY@204441|Rhodospirillales 204441|Rhodospirillales S Amidohydrolase family - - - - - - - - - - - - Amidohydro_3 DYD2_k127_4122403_0 56107.Cylst_1524 3.834e-277 890.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1HIUT@1161|Nostocales 1117|Cyanobacteria Q TIGRFAM amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,Thioesterase DYD2_k127_4122403_1 1183438.GKIL_1832 3.665e-203 643.0 COG2220@1|root,COG2220@2|Bacteria,1G2X1@1117|Cyanobacteria 1117|Cyanobacteria Q Beta-lactamase superfamily domain - - - - - - - - - - - - Lactamase_B_2,Lactamase_B_3,NAD_binding_4 DYD2_k127_4131143_0 1444309.JAQG01000076_gene4566 3.278e-137 458.0 COG1012@1|root,COG1012@2|Bacteria,1UHQT@1239|Firmicutes,4IS6J@91061|Bacilli,277DN@186822|Paenibacillaceae 91061|Bacilli C Aldehyde dehydrogenase family - - - - - - - - - - - - Aldedh DYD2_k127_4131143_1 880073.Calab_3249 1.029e-24 108.0 COG4576@1|root,COG4576@2|Bacteria 2|Bacteria CQ ethanolamine utilization protein EutN carboxysome structural protein Ccml eutN - - ko:K04028 - - - - ko00000 - - - EutN_CcmL DYD2_k127_4131143_2 555088.DealDRAFT_2074 9.552e-19 92.0 COG3830@1|root,COG3830@2|Bacteria,1VENW@1239|Firmicutes,24QNV@186801|Clostridia,42KRF@68298|Syntrophomonadaceae 186801|Clostridia T PFAM amino acid-binding ACT domain protein - - - ko:K07166 - - - - ko00000 - - - ACT_6 DYD2_k127_4145190_2 1340493.JNIF01000003_gene1856 9.965e-94 314.0 COG0215@1|root,COG0215@2|Bacteria,3Y2PW@57723|Acidobacteria 57723|Acidobacteria J Belongs to the class-I aminoacyl-tRNA synthetase family cysS - 6.1.1.16 ko:K01883 ko00970,map00970 M00359,M00360 R03650 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_2,tRNA-synt_1e DYD2_k127_4145190_3 221288.JH992901_gene2489 3.795e-60 212.0 COG1670@1|root,COG1670@2|Bacteria,1G621@1117|Cyanobacteria 1117|Cyanobacteria J PFAM Acetyltransferase (GNAT) family - - - - - - - - - - - - Acetyltransf_3 DYD2_k127_4145190_1 1123073.KB899242_gene1567 2.077e-178 570.0 2DBJC@1|root,2Z9K5@2|Bacteria,1NQYW@1224|Proteobacteria 1224|Proteobacteria G Glycosyl hydrolase family 47 - - 3.2.1.113 ko:K01230 ko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141 M00073,M00074 R05982,R06722 - ko00000,ko00001,ko00002,ko01000,ko04131 - GH47 - Glyco_hydro_47 DYD2_k127_4145190_5 666681.M301_1020 4.335e-09 58.0 COG0642@1|root,COG2770@1|root,COG2205@2|Bacteria,COG2770@2|Bacteria,1N17V@1224|Proteobacteria,2WEJE@28216|Betaproteobacteria,2KMEA@206350|Nitrosomonadales 206350|Nitrosomonadales T histidine kinase HAMP region domain protein - - - - - - - - - - - - HAMP,HATPase_c,HisKA DYD2_k127_4145190_0 1089547.KB913013_gene4207 0.0 1013.0 COG1505@1|root,COG1505@2|Bacteria,4NFJS@976|Bacteroidetes,47JBG@768503|Cytophagia 976|Bacteroidetes E PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain pep GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 ko:K01322 ko04614,map04614 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N DYD2_k127_414945_0 1340493.JNIF01000004_gene405 7.428e-86 301.0 COG1629@1|root,COG4771@2|Bacteria,3Y36T@57723|Acidobacteria 57723|Acidobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_4152530_5 926566.Terro_0541 4.684e-08 57.0 COG0238@1|root,COG0238@2|Bacteria,3Y53K@57723|Acidobacteria,2JJTE@204432|Acidobacteriia 204432|Acidobacteriia J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit rpsR - - ko:K02963 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S18 DYD2_k127_4152530_4 1340493.JNIF01000004_gene998 3.047e-19 92.0 COG0360@1|root,COG0360@2|Bacteria,3Y50N@57723|Acidobacteria 57723|Acidobacteria J Binds together with S18 to 16S ribosomal RNA rpsF - - ko:K02990 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S6 DYD2_k127_4152530_1 204669.Acid345_4538 9.566e-51 186.0 COG0193@1|root,COG0193@2|Bacteria,3Y48V@57723|Acidobacteria,2JJ31@204432|Acidobacteriia 204432|Acidobacteriia J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis pth - 3.1.1.29 ko:K01056 - - - - ko00000,ko01000,ko03012 - - - Pept_tRNA_hydro DYD2_k127_4152530_2 1198114.AciX9_0320 2.027e-43 166.0 COG1825@1|root,COG1825@2|Bacteria,3Y41C@57723|Acidobacteria,2JHW5@204432|Acidobacteriia 204432|Acidobacteriia J This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance ctc - - ko:K02897 ko03010,map03010 M00178 - - ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L25p,Ribosomal_TL5_C DYD2_k127_4152530_0 1198114.AciX9_0319 1.652e-126 412.0 COG0462@1|root,COG0462@2|Bacteria,3Y3KV@57723|Acidobacteria,2JHTF@204432|Acidobacteriia 204432|Acidobacteriia F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) prs - 2.7.6.1 ko:K00948 ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230 M00005 R01049 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - Pribosyl_synth,Pribosyltran_N DYD2_k127_4152530_3 562970.Btus_0064 8.23e-35 143.0 COG1947@1|root,COG1947@2|Bacteria,1TPXV@1239|Firmicutes,4HAV8@91061|Bacilli,277ZR@186823|Alicyclobacillaceae 91061|Bacilli I Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol ispE GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 ko:K00919,ko:K16924 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096,M00582 R05634 RC00002,RC01439 ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.29 - iYO844.BSU00460 GHMP_kinases_C,GHMP_kinases_N DYD2_k127_4158114_0 485913.Krac_9897 5.415e-102 349.0 COG0661@1|root,COG0661@2|Bacteria,2G6DN@200795|Chloroflexi 2|Bacteria S PFAM ABC-1 domain protein aarF - - ko:K03688 - - - - ko00000 - - - ABC1,APH DYD2_k127_4158114_1 926550.CLDAP_13010 8.806e-62 224.0 COG3629@1|root,COG3629@2|Bacteria 2|Bacteria K phosphorelay signal transduction system - - - - - - - - - - - - AAA_16,Abhydrolase_1,BTAD,TPR_12,Trans_reg_C DYD2_k127_4187737_4 331678.Cphamn1_0872 1.508e-28 117.0 COG2361@1|root,COG2361@2|Bacteria 2|Bacteria S Protein of unknown function DUF86 - - - - - - - - - - - - DUF86 DYD2_k127_4187737_3 331678.Cphamn1_0871 7.555e-37 141.0 COG1669@1|root,COG1669@2|Bacteria 2|Bacteria S nucleotidyltransferase activity - - - ko:K07075 - - - - ko00000 - - - NTP_transf_2 DYD2_k127_4187737_0 485913.Krac_9358 3.165e-237 741.0 COG0006@1|root,COG0006@2|Bacteria 2|Bacteria E proline dipeptidase activity - - - - - - - - - - - - Creatinase_N,Peptidase_M24 DYD2_k127_4187737_1 485913.Krac_9359 7.544e-163 518.0 COG0022@1|root,COG0022@2|Bacteria,2G60F@200795|Chloroflexi 200795|Chloroflexi C PFAM Transketolase central region - - - ko:K21417 - - - - ko00000,ko01000 - - - Transket_pyr,Transketolase_C DYD2_k127_4187737_2 485913.Krac_9360 2.226e-147 473.0 COG1071@1|root,COG1071@2|Bacteria,2G7RR@200795|Chloroflexi 200795|Chloroflexi C PFAM dehydrogenase E1 component - - - ko:K21416 - - - - ko00000,ko01000 - - - E1_dh DYD2_k127_4200216_5 318996.AXAZ01000043_gene2086 8.351e-20 90.0 COG0500@1|root,COG2226@2|Bacteria,1R79J@1224|Proteobacteria,2U421@28211|Alphaproteobacteria,3JVA3@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11 DYD2_k127_4200216_4 1123242.JH636434_gene3240 2.209e-28 121.0 COG0500@1|root,COG2226@2|Bacteria,2J3W1@203682|Planctomycetes 203682|Planctomycetes Q Methyltransferase domain - - - - - - - - - - - - - DYD2_k127_4200216_7 877455.Metbo_1631 1.563e-06 53.0 COG1917@1|root,arCOG02994@2157|Archaea 2157|Archaea JM conserved protein, contains double-stranded beta-helix domain - - 1.13.11.4,4.2.1.108 ko:K00450,ko:K06720 ko00260,ko00350,ko01100,ko01120,map00260,map00350,map01100,map01120 M00033 R02656,R06979 RC00764,RC01729 ko00000,ko00001,ko00002,ko01000 - - - Cupin_2,Ectoine_synth DYD2_k127_4200216_2 1459636.NTE_00231 2.94e-51 192.0 arCOG01792@1|root,arCOG01792@2157|Archaea 2157|Archaea K Methyltransferase type 11 - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD2_k127_4200216_1 47839.CCAU010000011_gene5282 6.077e-61 226.0 COG2141@1|root,COG2141@2|Bacteria,2GJI7@201174|Actinobacteria,23AVQ@1762|Mycobacteriaceae 201174|Actinobacteria C Luciferase-like monooxygenase - - - - - - - - - - - - Bac_luciferase DYD2_k127_4200216_3 543728.Vapar_1005 3.901e-32 130.0 COG3791@1|root,COG3791@2|Bacteria,1N6S5@1224|Proteobacteria,2VWNN@28216|Betaproteobacteria 28216|Betaproteobacteria S PFAM glutathione-dependent formaldehyde-activating - - - - - - - - - - - - GFA DYD2_k127_4200216_0 1459636.NTE_00231 3.254e-61 220.0 arCOG01792@1|root,arCOG01792@2157|Archaea 2157|Archaea K Methyltransferase type 11 - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD2_k127_4200216_8 598467.BrE312_0263 2.278e-05 48.0 COG1520@1|root,COG1520@2|Bacteria,1NYGT@1224|Proteobacteria,1T1IK@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Arylsulfotransferase (ASST) - - - - - - - - - - - - Arylsulfotran_2,Arylsulfotrans DYD2_k127_4200216_6 138119.DSY3757 3.022e-07 54.0 COG5586@1|root,COG5586@2|Bacteria,1UY9K@1239|Firmicutes,24G2U@186801|Clostridia,265ZI@186807|Peptococcaceae 186801|Clostridia - - - - - - - - - - - - - - - DYD2_k127_4214863_0 1267535.KB906767_gene5475 3.06e-122 399.0 COG0005@1|root,COG0005@2|Bacteria,3Y2MA@57723|Acidobacteria,2JI5Q@204432|Acidobacteriia 204432|Acidobacteriia F Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates mtnP - 2.4.2.28 ko:K00772 ko00270,ko01100,map00270,map01100 M00034 R01402 RC00063,RC02819 ko00000,ko00001,ko00002,ko01000 - - - PNP_UDP_1 DYD2_k127_4214863_2 1047013.AQSP01000110_gene63 1.932e-08 61.0 COG4105@1|root,COG4105@2|Bacteria,2NQ7U@2323|unclassified Bacteria 2|Bacteria S Outer membrane lipoprotein bamD GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - ko:K05807,ko:K08309 - - - - ko00000,ko01000,ko01011,ko02000 1.B.33.1 GH23 - YfiO DYD2_k127_4214863_1 469383.Cwoe_1095 2.128e-63 222.0 COG0524@1|root,COG0524@2|Bacteria,2HPJD@201174|Actinobacteria,4CQWU@84995|Rubrobacteria 84995|Rubrobacteria G pfkB family carbohydrate kinase - - - - - - - - - - - - PfkB DYD2_k127_4215187_0 1380391.JIAS01000011_gene5122 3.108e-121 410.0 COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,2JR1T@204441|Rhodospirillales 204441|Rhodospirillales T Adenylyl- / guanylyl cyclase, catalytic domain - - - - - - - - - - - - Guanylate_cyc,TPR_19 DYD2_k127_4215187_1 318996.AXAZ01000008_gene4295 3.624e-25 106.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_4215187_4 457570.Nther_0693 7.714e-05 53.0 COG4585@1|root,COG4585@2|Bacteria,1V8KW@1239|Firmicutes,24F76@186801|Clostridia 186801|Clostridia T Integral membrane sensor signal transduction histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3 DYD2_k127_4215187_3 1346791.M529_02800 4.009e-12 75.0 COG0507@1|root,COG1112@1|root,COG2251@1|root,COG0507@2|Bacteria,COG1112@2|Bacteria,COG2251@2|Bacteria,1MWW9@1224|Proteobacteria,2TTSD@28211|Alphaproteobacteria,2K1G4@204457|Sphingomonadales 204457|Sphingomonadales L RNase_H superfamily - - - - - - - - - - - - AAA_11,AAA_12,AAA_30,RNase_H_2 DYD2_k127_4215187_2 1283299.AUKG01000001_gene2161 5.698e-19 88.0 COG1112@1|root,COG2251@1|root,COG1112@2|Bacteria,COG2251@2|Bacteria,2GMX8@201174|Actinobacteria 201174|Actinobacteria L nuclease - - - - - - - - - - - - AAA_11,AAA_12,AAA_30,PDDEXK_1,RNase_H_2 DYD2_k127_4224299_1 292459.STH2766 1.131e-63 232.0 COG0013@1|root,COG0013@2|Bacteria,1TSBZ@1239|Firmicutes,249VN@186801|Clostridia 186801|Clostridia J Threonine alanine tRNA ligase second additional domain protein alaXL - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD DYD2_k127_4224299_0 1128421.JAGA01000003_gene3653 8.632e-92 327.0 COG3975@1|root,COG3975@2|Bacteria,2NQU3@2323|unclassified Bacteria 2|Bacteria S M61 glycyl aminopeptidase - - - - - - - - - - - - PDZ_2,Peptidase_M61 DYD2_k127_422670_1 1115512.EH105704_24_00070 9.483e-20 97.0 COG0328@1|root,COG0328@2|Bacteria,1RCZ1@1224|Proteobacteria,1S3YC@1236|Gammaproteobacteria,3XNJ9@561|Escherichia 1236|Gammaproteobacteria L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids rnhA GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576 3.1.26.4 ko:K03469 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - RNase_H DYD2_k127_422670_0 700598.Niako_0486 5.889e-99 347.0 COG4447@1|root,COG4447@2|Bacteria,4NRP7@976|Bacteroidetes,1IU78@117747|Sphingobacteriia 976|Bacteroidetes UW protein related to plant photosystem II stability assembly factor - - - - - - - - - - - - PSII_BNR DYD2_k127_4231293_0 243233.MCA0142 6.406e-60 213.0 COG0387@1|root,COG0387@2|Bacteria,1N1MR@1224|Proteobacteria,1S1GI@1236|Gammaproteobacteria 1236|Gammaproteobacteria P Sodium/calcium exchanger protein - - - ko:K07300 - - - - ko00000,ko02000 2.A.19 - - Na_Ca_ex DYD2_k127_4231293_2 243230.DR_1710 3.726e-27 113.0 arCOG05253@1|root,31CTK@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - YmaF DYD2_k127_4231293_1 102129.Lepto7375DRAFT_0112 2.731e-43 161.0 COG1544@1|root,COG1544@2|Bacteria,1G9X9@1117|Cyanobacteria,1HFM0@1150|Oscillatoriales 1117|Cyanobacteria J Sigma 54 modulation protein / S30EA ribosomal protein - - - - - - - - - - - - Ribosomal_S30AE DYD2_k127_4233333_2 1111479.AXAR01000001_gene272 1.885e-15 76.0 COG0686@1|root,COG0686@2|Bacteria,1TNZ5@1239|Firmicutes,4HABX@91061|Bacilli,277YI@186823|Alicyclobacillaceae 91061|Bacilli C Belongs to the AlaDH PNT family ald - 1.4.1.1 ko:K00259 ko00250,ko00430,ko01100,map00250,map00430,map01100 - R00396 RC00008 ko00000,ko00001,ko01000 - - - AlaDh_PNT_C,AlaDh_PNT_N DYD2_k127_4233333_0 1379698.RBG1_1C00001G0471 1.254e-218 692.0 COG1012@1|root,COG1012@2|Bacteria,2NNR8@2323|unclassified Bacteria 2|Bacteria C Belongs to the aldehyde dehydrogenase family ycbD - 1.2.1.3 ko:K00128,ko:K22187 ko00010,ko00040,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00040,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146,R11768 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD2_k127_4233333_1 234267.Acid_2476 5.949e-83 295.0 COG0265@1|root,COG0265@2|Bacteria,3Y2SD@57723|Acidobacteria 57723|Acidobacteria O PFAM peptidase S1 and S6, chymotrypsin Hap - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 DYD2_k127_4245452_1 1121875.KB907558_gene547 1.546e-34 138.0 2EPER@1|root,33H1D@2|Bacteria,4NZ37@976|Bacteroidetes,1I6B9@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_4245452_0 425104.Ssed_1775 3.164e-56 198.0 COG3631@1|root,COG3631@2|Bacteria,1RJ29@1224|Proteobacteria,1S6S3@1236|Gammaproteobacteria,2QC9V@267890|Shewanellaceae 1236|Gammaproteobacteria S SnoaL-like domain - - - - - - - - - - - - SnoaL_2 DYD2_k127_4245452_2 794846.AJQU01000105_gene2925 5.34e-26 110.0 COG2944@1|root,COG2944@2|Bacteria,1PT1Q@1224|Proteobacteria,2VCXF@28211|Alphaproteobacteria,4BGXM@82115|Rhizobiaceae 28211|Alphaproteobacteria K Helix-turn-helix domain - - - ko:K07726 - - - - ko00000,ko03000 - - - HTH_3,HTH_31,MqsA_antitoxin DYD2_k127_4245452_3 366602.Caul_0652 9.674e-25 106.0 COG4737@1|root,COG4737@2|Bacteria,1N7N5@1224|Proteobacteria,2UGH7@28211|Alphaproteobacteria,2KJJB@204458|Caulobacterales 204458|Caulobacterales S RelE toxin of RelE / RelB toxin-antitoxin system - - - - - - - - - - - - RelE DYD2_k127_4259414_1 1379270.AUXF01000007_gene996 1.619e-27 128.0 COG0515@1|root,COG0515@2|Bacteria,1ZUIC@142182|Gemmatimonadetes 142182|Gemmatimonadetes KLT Lipopolysaccharide kinase (Kdo/WaaP) family - - - - - - - - - - - - Pkinase DYD2_k127_4259414_2 32057.KB217478_gene6555 1.746e-05 57.0 COG0457@1|root,COG0457@2|Bacteria,1GD9N@1117|Cyanobacteria,1HQT4@1161|Nostocales 1117|Cyanobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_2,TPR_8 DYD2_k127_4259414_0 28072.Nos7524_3833 1.145e-155 512.0 COG0784@1|root,COG2202@1|root,COG4191@1|root,COG5002@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG4191@2|Bacteria,COG5002@2|Bacteria,1GPYK@1117|Cyanobacteria 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - 2.1.1.80,3.1.1.61 ko:K13924 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - HATPase_c,HisKA,PAS_4,PAS_8,PAS_9,Response_reg DYD2_k127_4266562_2 700598.Niako_4843 4.877e-16 81.0 COG0394@1|root,COG0394@2|Bacteria,4P803@976|Bacteroidetes 976|Bacteroidetes T PFAM low molecular weight phosphotyrosine protein phosphatase - - 1.20.4.1 ko:K03741 - - - - ko00000,ko01000 - - - LMWPc DYD2_k127_4266562_0 196490.AUEZ01000033_gene6611 5.404e-108 359.0 COG1234@1|root,COG1234@2|Bacteria,1R64Z@1224|Proteobacteria,2TU6T@28211|Alphaproteobacteria,3JX4C@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S Beta-lactamase superfamily domain - - - - - - - - - - - - Lactamase_B_2 DYD2_k127_4266562_4 392499.Swit_4049 0.0003288 48.0 28ZXZ@1|root,2ZMNF@2|Bacteria,1NM5Z@1224|Proteobacteria,2UWBC@28211|Alphaproteobacteria,2K81I@204457|Sphingomonadales 204457|Sphingomonadales - - - - - - - - - - - - - - - DYD2_k127_4266562_3 685035.ADAE01000017_gene336 7.077e-07 60.0 2EMN6@1|root,33FAI@2|Bacteria,1NPHX@1224|Proteobacteria,2UT06@28211|Alphaproteobacteria,2K767@204457|Sphingomonadales 204457|Sphingomonadales - - - - - - - - - - - - - - - DYD2_k127_4266562_1 32049.SYNPCC7002_A1697 6.425e-35 138.0 2E7CC@1|root,331VJ@2|Bacteria,1G9CV@1117|Cyanobacteria,1H21I@1129|Synechococcus 1117|Cyanobacteria S Protein of unknown function (DUF4087) - - - - - - - - - - - - DUF4087 DYD2_k127_4270535_0 316274.Haur_2681 1.284e-142 464.0 COG0855@1|root,COG0855@2|Bacteria,2G68J@200795|Chloroflexi,374Y0@32061|Chloroflexia 32061|Chloroflexia H Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) ppk - 2.7.4.1 ko:K00937 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PP_kinase,PP_kinase_C,PP_kinase_N DYD2_k127_427274_4 1131269.AQVV01000001_gene1381 1.723e-08 58.0 COG1213@1|root,COG2513@1|root,COG1213@2|Bacteria,COG2513@2|Bacteria 2|Bacteria G methylisocitrate lyase activity aepX - 2.7.7.74,5.4.2.9 ko:K01841,ko:K07281 ko00440,ko00562,ko01100,ko01120,ko01130,map00440,map00562,map01100,map01120,map01130 - R00661,R09669 RC00002,RC02792 ko00000,ko00001,ko01000 - - - CTP_transf_like,NTP_transf_3,NTP_transferase,PEP_mutase DYD2_k127_427274_3 555779.Dthio_PD0137 1.576e-53 203.0 COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,42PBK@68525|delta/epsilon subdivisions,2WIZX@28221|Deltaproteobacteria,2M99E@213115|Desulfovibrionales 28221|Deltaproteobacteria C PFAM Iron-containing alcohol dehydrogenase - - - - - - - - - - - - Fe-ADH DYD2_k127_427274_1 388467.A19Y_2947 3.217e-99 336.0 COG0028@1|root,COG4032@1|root,COG0028@2|Bacteria,COG4032@2|Bacteria,1G36U@1117|Cyanobacteria,1HFJ5@1150|Oscillatoriales 1117|Cyanobacteria EH Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - 4.1.1.82 ko:K09459 ko00440,ko01100,ko01120,ko01130,map00440,map01100,map01120,map01130 - R04053 RC00506 ko00000,ko00001,ko01000 - - - TPP_enzyme_C,TPP_enzyme_N DYD2_k127_427274_0 591159.ACEZ01000045_gene2940 7.16e-201 634.0 COG0119@1|root,COG0119@2|Bacteria,2IPG2@201174|Actinobacteria 201174|Actinobacteria E HMGL-like - - - - - - - - - - - - HMGL-like DYD2_k127_427274_2 1463936.JOJI01000031_gene2202 2.912e-76 261.0 COG0111@1|root,COG0111@2|Bacteria,2I3FK@201174|Actinobacteria 201174|Actinobacteria EH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family - - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C DYD2_k127_4286629_1 861299.J421_0736 9.026e-39 147.0 COG1228@1|root,COG1228@2|Bacteria,1ZTI7@142182|Gemmatimonadetes 142182|Gemmatimonadetes Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_4286629_3 1519464.HY22_10450 1.513e-15 85.0 COG4636@1|root,COG4636@2|Bacteria 2|Bacteria D protein conserved in cyanobacteria - - - - - - - - - - - - Uma2 DYD2_k127_4286629_2 234267.Acid_3420 3.906e-25 118.0 COG2304@1|root,COG2304@2|Bacteria,3Y38P@57723|Acidobacteria 2|Bacteria S von Willebrand factor, type A - - - ko:K07114,ko:K12511 - - - - ko00000,ko02000,ko02044 1.A.13.2.2,1.A.13.2.3 - - FHA,VWA,VWA_2 DYD2_k127_4286629_0 1120971.AUCA01000028_gene2337 5.809e-74 263.0 COG0582@1|root,COG0582@2|Bacteria,1TTJI@1239|Firmicutes,4HDG6@91061|Bacilli 91061|Bacilli L Belongs to the 'phage' integrase family - - - - - - - - - - - - Arm-DNA-bind_4,Phage_int_SAM_3,Phage_int_SAM_5,Phage_integrase DYD2_k127_4288827_4 1193181.BN10_1100002 1.053e-15 79.0 COG4640@1|root,COG4640@2|Bacteria,2GSZE@201174|Actinobacteria,4FH41@85021|Intrasporangiaceae 201174|Actinobacteria S Interferon-induced transmembrane protein - - - - - - - - - - - - CD225 DYD2_k127_4288827_2 272134.KB731324_gene3671 4.352e-31 126.0 COG2314@1|root,COG2314@2|Bacteria,1G9J3@1117|Cyanobacteria,1HDPD@1150|Oscillatoriales 1117|Cyanobacteria S PFAM TM2 domain - - - - - - - - - - - - TM2 DYD2_k127_4288827_3 306281.AJLK01000156_gene4639 1.553e-25 110.0 2E37T@1|root,32Y7G@2|Bacteria,1GECJ@1117|Cyanobacteria 1117|Cyanobacteria S Protein of unknown function (DUF2752) - - - - - - - - - - - - DUF2752 DYD2_k127_4288827_0 1278073.MYSTI_02808 2.873e-133 432.0 COG3342@1|root,COG3342@2|Bacteria,1MWQT@1224|Proteobacteria 1224|Proteobacteria S major pilin protein fima MA20_16755 - - - - - - - - - - - DUF1028 DYD2_k127_4288827_1 517418.Ctha_2714 7.907e-59 214.0 COG0500@1|root,COG2226@2|Bacteria,1FFN6@1090|Chlorobi 1090|Chlorobi Q Methionine biosynthesis protein MetW - - - - - - - - - - - - Methyltransf_11 DYD2_k127_4299450_2 1267535.KB906767_gene331 5.709e-17 85.0 COG5368@1|root,COG5368@2|Bacteria,3Y2MM@57723|Acidobacteria,2JI52@204432|Acidobacteriia 204432|Acidobacteriia S Putative glucoamylase - - - - - - - - - - - - Glycoamylase DYD2_k127_4299450_0 469383.Cwoe_5411 1.264e-274 863.0 COG1472@1|root,COG1472@2|Bacteria,2GJ5H@201174|Actinobacteria 201174|Actinobacteria G hydrolase, family 3 bglX - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C DYD2_k127_4299450_1 929713.NIASO_15630 2.26e-215 685.0 COG3119@1|root,COG3119@2|Bacteria,4NHH7@976|Bacteroidetes,1IQY0@117747|Sphingobacteriia 976|Bacteroidetes P sulfatase mdsA - - - - - - - - - - - DUF4976,Sulfatase DYD2_k127_4302721_0 1123325.JHUV01000009_gene326 8.088e-101 340.0 COG0436@1|root,COG0436@2|Bacteria,2G3VY@200783|Aquificae 200783|Aquificae E PFAM Aminotransferase class I and II - - 2.6.1.1 ko:K00812 ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00355,R00694,R00734,R00896,R02433,R02619,R05052 RC00006 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 DYD2_k127_4302721_1 1382359.JIAL01000001_gene2600 8.32e-16 80.0 COG0810@1|root,COG0810@2|Bacteria,3Y58J@57723|Acidobacteria,2JJPH@204432|Acidobacteriia 204432|Acidobacteriia M Gram-negative bacterial TonB protein C-terminal - - - - - - - - - - - - TonB_C DYD2_k127_4305332_1 251221.35210569 1.62e-79 272.0 COG0573@1|root,COG0573@2|Bacteria,1G1JR@1117|Cyanobacteria 1117|Cyanobacteria P probably responsible for the translocation of the substrate across the membrane - - - ko:K02037 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - BPD_transp_1 DYD2_k127_4305332_0 530564.Psta_2805 1.393e-134 437.0 COG0226@1|root,COG0226@2|Bacteria,2IYX0@203682|Planctomycetes 203682|Planctomycetes P COG0226 ABC-type phosphate transport system periplasmic - - - ko:K02040 ko02010,ko02020,ko05152,map02010,map02020,map05152 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - PBP_like,PBP_like_2 DYD2_k127_4305332_3 1294142.CINTURNW_4392 1.875e-07 59.0 COG0745@1|root,COG0745@2|Bacteria,1TSWT@1239|Firmicutes,248B6@186801|Clostridia,36EIV@31979|Clostridiaceae 186801|Clostridia K PFAM response regulator receiver - - - - - - - - - - - - Response_reg,Trans_reg_C DYD2_k127_4305332_2 1267535.KB906767_gene942 4.311e-26 118.0 COG1629@1|root,COG4771@2|Bacteria,3Y2ZK@57723|Acidobacteria 57723|Acidobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_4308235_1 1416759.AYMR01000005_gene3618 1.913e-09 66.0 COG3832@1|root,COG3832@2|Bacteria 2|Bacteria J glyoxalase III activity - - - - - - - - - - - - AHSA1 DYD2_k127_4308235_0 661478.OP10G_0354 2.257e-64 227.0 COG4312@1|root,COG4312@2|Bacteria 2|Bacteria S Bacterial protein of unknown function (DUF899) - - - - - - - - - - - - DUF899 DYD2_k127_4308235_2 369723.Strop_0613 8.882e-08 61.0 2EZS7@1|root,33SX0@2|Bacteria,2IMKX@201174|Actinobacteria,4DJ61@85008|Micromonosporales 201174|Actinobacteria S SnoaL-like domain - - - - - - - - - - - - SnoaL_3 DYD2_k127_4314638_0 1168034.FH5T_08655 3.604e-87 295.0 COG0434@1|root,COG0434@2|Bacteria,4P0R6@976|Bacteroidetes 976|Bacteroidetes S BtpA family - - - ko:K06971 - - - - ko00000 - - - BtpA DYD2_k127_4315608_4 1158760.AQXP01000051_gene787 9.212e-07 62.0 COG1716@1|root,COG1716@2|Bacteria 2|Bacteria T histone H2A K63-linked ubiquitination - - - - - - - - - - - - FHA,GAF_2,HATPase_c,HisKA,PAS_3,Response_reg DYD2_k127_4315608_1 1340434.AXVA01000007_gene4982 8.991e-74 271.0 COG0265@1|root,COG0265@2|Bacteria,1UYZJ@1239|Firmicutes,4HFHN@91061|Bacilli,1ZEM1@1386|Bacillus 91061|Bacilli O COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - - - - - - - - - - Trypsin_2 DYD2_k127_4315608_3 1131269.AQVV01000001_gene1393 2.646e-14 78.0 2CBGA@1|root,33A66@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_4315608_0 234267.Acid_2148 9.169e-172 550.0 COG0612@1|root,COG0612@2|Bacteria,3Y77X@57723|Acidobacteria 57723|Acidobacteria S Insulinase (Peptidase family M16) - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_4315608_2 1379698.RBG1_1C00001G0718 5.502e-62 224.0 COG0612@1|root,COG0612@2|Bacteria,2NPE5@2323|unclassified Bacteria 2|Bacteria S Peptidase M16 - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_4325090_3 926569.ANT_25050 2.979e-20 94.0 COG0443@1|root,COG0443@2|Bacteria,2G5U5@200795|Chloroflexi 200795|Chloroflexi O Heat shock 70 kDa protein dnaK - - ko:K04043 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33.1 - - HSP70 DYD2_k127_4325090_0 720554.Clocl_2767 1.548e-118 391.0 COG0484@1|root,COG0484@2|Bacteria,1TP00@1239|Firmicutes,248EM@186801|Clostridia,3WH82@541000|Ruminococcaceae 186801|Clostridia O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins dnaJ - - ko:K03686,ko:K05516 - - - - ko00000,ko03029,ko03036,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG DYD2_k127_4325090_1 981383.AEWH01000024_gene2763 1.264e-54 200.0 COG0500@1|root,COG0500@2|Bacteria,1V4RN@1239|Firmicutes,4HHFD@91061|Bacilli 91061|Bacilli Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD2_k127_4325090_2 926569.ANT_25030 1.638e-38 146.0 COG2264@1|root,COG2264@2|Bacteria,2G69X@200795|Chloroflexi 200795|Chloroflexi J Ribosomal protein L11 methyltransferase prmA - - ko:K02687 - - - - ko00000,ko01000,ko03009 - - - PrmA DYD2_k127_4328415_0 240292.Ava_4099 0.0 1257.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1HIUT@1161|Nostocales 1117|Cyanobacteria Q TIGRFAM amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,TPR_1,TPR_8,Thioesterase DYD2_k127_4333840_1 861299.J421_6266 2.015e-105 346.0 COG2211@1|root,COG2211@2|Bacteria,1ZUJ2@142182|Gemmatimonadetes 142182|Gemmatimonadetes G MFS/sugar transport protein - - - ko:K16211 - - - - ko00000,ko02000 2.A.2.6 - - MFS_1 DYD2_k127_4333840_0 861299.J421_6259 4.563e-196 630.0 COG0366@1|root,COG0366@2|Bacteria,1ZUGN@142182|Gemmatimonadetes 142182|Gemmatimonadetes G Cyclomaltodextrinase, N-terminal - - 3.2.1.135 ko:K21575 - - - - ko00000,ko01000 - GH13 - Alpha-amylase,Cyc-maltodext_N DYD2_k127_4333840_2 28072.Nos7524_4606 6.039e-27 111.0 COG1640@1|root,COG1640@2|Bacteria,1G0F2@1117|Cyanobacteria,1HJFN@1161|Nostocales 1117|Cyanobacteria G TIGRFAM 4-alpha-glucanotransferase malQ - 2.4.1.25 ko:K00705 ko00500,ko01100,map00500,map01100 - R05196 RC00049 ko00000,ko00001,ko01000 - GH77 iJN678.malQ Glyco_hydro_77 DYD2_k127_4356406_1 489825.LYNGBM3L_30250 2.062e-27 113.0 COG0604@1|root,COG0604@2|Bacteria,1G0N4@1117|Cyanobacteria,1H9U9@1150|Oscillatoriales 1117|Cyanobacteria C NADPH quinone reductase - - - - - - - - - - - - ADH_N,ADH_zinc_N_2 DYD2_k127_4356406_2 329726.AM1_6084 1.644e-20 95.0 2DNVA@1|root,32ZBE@2|Bacteria,1GFXX@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_4356406_0 42256.RradSPS_0358 6.429e-124 415.0 COG2909@1|root,COG2909@2|Bacteria,2HENR@201174|Actinobacteria,4CPC9@84995|Rubrobacteria 84995|Rubrobacteria K helix_turn_helix, Lux Regulon - - - ko:K03556 - - - - ko00000,ko03000 - - - AAA_16,AAA_22,GerE DYD2_k127_4358587_2 1089553.Tph_c12600 2.034e-65 238.0 COG0770@1|root,COG0770@2|Bacteria,1VT78@1239|Firmicutes,25100@186801|Clostridia,42EWR@68295|Thermoanaerobacterales 186801|Clostridia M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein murF - 6.3.2.10 ko:K01929 ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502 - R04573,R04617 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M DYD2_k127_4358587_0 204669.Acid345_3635 1.375e-143 480.0 COG0768@1|root,COG0768@2|Bacteria,3Y2XX@57723|Acidobacteria,2JHPS@204432|Acidobacteriia 204432|Acidobacteriia M Penicillin-binding protein, dimerisation domain - - 3.4.16.4 ko:K03587 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011,ko03036 - - - PASTA,PBP_dimer,Transpeptidase DYD2_k127_4358587_6 240015.ACP_1093 9.58e-06 53.0 COG2919@1|root,COG2919@2|Bacteria,3Y4JZ@57723|Acidobacteria,2JJBJ@204432|Acidobacteriia 204432|Acidobacteriia D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic - - - - - - - - - - - - DivIC,FtsL DYD2_k127_4358587_1 370438.PTH_1869 6.631e-86 295.0 COG0275@1|root,COG0275@2|Bacteria,1TNZV@1239|Firmicutes,248B5@186801|Clostridia,260DT@186807|Peptococcaceae 186801|Clostridia J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA rsmH - 2.1.1.199 ko:K03438 - - - - ko00000,ko01000,ko03009 - - - Methyltransf_5 DYD2_k127_4358587_4 1382359.JIAL01000001_gene1949 1.404e-47 174.0 COG2001@1|root,COG2001@2|Bacteria,3Y4NF@57723|Acidobacteria,2JJA0@204432|Acidobacteriia 204432|Acidobacteriia K Belongs to the MraZ family mraZ - - ko:K03925 - - - - ko00000 - - - MraZ DYD2_k127_4358587_3 671143.DAMO_0448 1.92e-59 215.0 COG0428@1|root,COG0428@2|Bacteria,2NQ6J@2323|unclassified Bacteria 2|Bacteria P ZIP Zinc transporter zupT - - ko:K07238,ko:K11021,ko:K16267 - - - - ko00000,ko02000,ko02042 2.A.5.4.11,2.A.5.5 - - Zip DYD2_k127_4358587_5 591001.Acfer_0224 1.673e-19 97.0 COG1512@1|root,COG1512@2|Bacteria,1V5YF@1239|Firmicutes,4H1Z7@909932|Negativicutes 909932|Negativicutes S TPM domain - - - ko:K06872 - - - - ko00000 - - - TPM_phosphatase DYD2_k127_4361041_3 1121403.AUCV01000002_gene608 1.983e-32 131.0 COG0009@1|root,COG0009@2|Bacteria,1MVPM@1224|Proteobacteria,42UBZ@68525|delta/epsilon subdivisions,2WNB6@28221|Deltaproteobacteria,2MJXY@213118|Desulfobacterales 28221|Deltaproteobacteria J TIGRFAM Sua5 YciO YrdC YwlC family protein - - 2.7.7.87 ko:K07566 - - R10463 RC00745 ko00000,ko01000,ko03009,ko03016 - - - Sua5_yciO_yrdC DYD2_k127_4361041_1 671143.DAMO_2141 1.379e-65 230.0 COG4122@1|root,COG4122@2|Bacteria,2NPV6@2323|unclassified Bacteria 2|Bacteria S Methyltransferase domain yrrM - 2.1.1.104 ko:K00588 ko00360,ko00940,ko00941,ko00945,ko01100,ko01110,map00360,map00940,map00941,map00945,map01100,map01110 M00039,M00350 R01942,R06578 RC00003,RC00392 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_3 DYD2_k127_4361041_0 247490.KSU1_B0365 1.452e-134 443.0 COG2204@1|root,COG2204@2|Bacteria,2IXIQ@203682|Planctomycetes 203682|Planctomycetes T Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - ko:K07714 ko02020,map02020 M00500 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_4361041_2 247490.KSU1_B0364 2.52e-34 139.0 COG4191@1|root,COG4191@2|Bacteria,2J2BM@203682|Planctomycetes 203682|Planctomycetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_4376385_2 62928.azo3066 5.019e-32 126.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VHAT@28216|Betaproteobacteria,2KW0Z@206389|Rhodocyclales 206389|Rhodocyclales IQ COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - ko:K00666 - - - - ko00000,ko01000,ko01004 - - - AMP-binding,AMP-binding_C DYD2_k127_4376385_0 1173021.ALWA01000019_gene334 1.889e-143 469.0 COG3321@1|root,COG3321@2|Bacteria,1FZXE@1117|Cyanobacteria 1117|Cyanobacteria Q Beta-ketoacyl synthase, N-terminal domain - - - - - - - - - - - - Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,Methyltransf_12,PP-binding,Thioesterase,ketoacyl-synt DYD2_k127_4376385_1 251229.Chro_3727 9.965e-35 140.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,3VII7@52604|Pleurocapsales 1117|Cyanobacteria Q COGs COG1020 Non-ribosomal peptide synthetase modules and related protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding DYD2_k127_4382869_3 1210884.HG799465_gene11340 3.444e-22 97.0 COG1801@1|root,COG1801@2|Bacteria,2IYWM@203682|Planctomycetes 203682|Planctomycetes S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD2_k127_4382869_0 204669.Acid345_3520 2.139e-307 957.0 COG0365@1|root,COG0365@2|Bacteria,3Y39K@57723|Acidobacteria,2JI3Z@204432|Acidobacteriia 204432|Acidobacteriia I Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA acsA - 6.2.1.1 ko:K01895 ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200 M00357 R00235,R00236,R00316,R00926,R01354 RC00004,RC00012,RC00043,RC00070,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACAS_N,AMP-binding,AMP-binding_C DYD2_k127_4382869_2 234267.Acid_4934 7.656e-32 139.0 COG0628@1|root,COG0628@2|Bacteria,3Y4YN@57723|Acidobacteria 57723|Acidobacteria S AI-2E family transporter - - - - - - - - - - - - AI-2E_transport DYD2_k127_4382869_1 1121403.AUCV01000012_gene4102 5.72e-52 186.0 COG0505@1|root,COG0505@2|Bacteria,1MUB9@1224|Proteobacteria,42KZG@68525|delta/epsilon subdivisions,2WIQ5@28221|Deltaproteobacteria,2MIKI@213118|Desulfobacterales 28221|Deltaproteobacteria F Belongs to the CarA family carA - 6.3.5.5 ko:K01956 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_sm_chain,GATase DYD2_k127_4391459_0 760568.Desku_0615 4.707e-83 285.0 COG3971@1|root,COG3971@2|Bacteria,1TQVG@1239|Firmicutes,24A4N@186801|Clostridia,26136@186807|Peptococcaceae 186801|Clostridia Q Fumarylacetoacetate (FAA) hydrolase family - - 4.1.1.77,4.2.1.80 ko:K01617,ko:K02554 ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220 M00545,M00569 R02601,R02602,R04781,R05374 RC00750,RC00751,RC01213,RC02672 br01602,ko00000,ko00001,ko00002,ko01000 - - - FAA_hydrolase DYD2_k127_4391459_1 1235279.C772_01748 7.023e-57 209.0 COG1414@1|root,COG1414@2|Bacteria,1TRMW@1239|Firmicutes,4HCSI@91061|Bacilli,26ICZ@186818|Planococcaceae 91061|Bacilli K helix_turn_helix isocitrate lyase regulation - - - - - - - - - - - - HTH_IclR,IclR DYD2_k127_4401386_1 314254.OA2633_07359 3.086e-33 136.0 COG2885@1|root,COG2885@2|Bacteria,1MZTV@1224|Proteobacteria,2U758@28211|Alphaproteobacteria,43XZZ@69657|Hyphomonadaceae 28211|Alphaproteobacteria M Belongs to the ompA family pal - - ko:K03640 - - - - ko00000,ko02000 2.C.1.2 - - OmpA DYD2_k127_4401386_0 1173022.Cri9333_1541 2.911e-48 185.0 COG4447@1|root,COG4447@2|Bacteria,1GAGV@1117|Cyanobacteria,1HF4J@1150|Oscillatoriales 1117|Cyanobacteria S cellulose binding - - - - - - - - - - - - BNR DYD2_k127_4402225_10 682795.AciX8_3883 6.866e-19 90.0 COG0770@1|root,COG0770@2|Bacteria,3Y3I2@57723|Acidobacteria,2JHW4@204432|Acidobacteriia 204432|Acidobacteriia M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein murF - 6.3.2.10 ko:K01929 ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502 - R04573,R04617 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M DYD2_k127_4402225_5 757424.Hsero_0333 1.026e-100 341.0 COG0472@1|root,COG0472@2|Bacteria,1MUTK@1224|Proteobacteria,2VHAP@28216|Betaproteobacteria,473X9@75682|Oxalobacteraceae 28216|Betaproteobacteria M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan mraY - 2.7.8.13 ko:K01000 ko00550,ko01100,ko01502,map00550,map01100,map01502 - R05629,R05630 RC00002,RC02753 ko00000,ko00001,ko01000,ko01011 9.B.146 - - Glycos_transf_4,MraY_sig1 DYD2_k127_4402225_2 204669.Acid345_3631 3.517e-119 398.0 COG0771@1|root,COG0771@2|Bacteria,3Y2JK@57723|Acidobacteria,2JHQF@204432|Acidobacteriia 204432|Acidobacteriia M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) murD - 6.3.2.9 ko:K01925 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R02783 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M DYD2_k127_4402225_4 204669.Acid345_3630 6.109e-107 359.0 COG0772@1|root,COG0772@2|Bacteria,3Y330@57723|Acidobacteria,2JHW0@204432|Acidobacteriia 204432|Acidobacteriia D Belongs to the SEDS family - - - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FTSW_RODA_SPOVE DYD2_k127_4402225_6 404589.Anae109_3884 2.275e-97 329.0 COG0707@1|root,COG0707@2|Bacteria,1MVIB@1224|Proteobacteria,42ME1@68525|delta/epsilon subdivisions,2WJNY@28221|Deltaproteobacteria,2YWEZ@29|Myxococcales 28221|Deltaproteobacteria M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) murG - 2.4.1.227 ko:K02563 ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112 - R05032,R05662 RC00005,RC00049 ko00000,ko00001,ko01000,ko01011 - GT28 - Glyco_tran_28_C,Glyco_transf_28 DYD2_k127_4402225_0 234267.Acid_7310 6.464e-164 529.0 COG0773@1|root,COG0773@2|Bacteria,3Y304@57723|Acidobacteria 57723|Acidobacteria M Belongs to the MurCDEF family murC - 6.3.2.8 ko:K01924 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R03193 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M DYD2_k127_4402225_7 479437.Elen_1438 3.706e-51 194.0 COG0812@1|root,COG0812@2|Bacteria,2GIV2@201174|Actinobacteria,4CUE7@84998|Coriobacteriia 84998|Coriobacteriia M Cell wall formation murB - 1.3.1.98 ko:K00075 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R03191,R03192 RC02639 ko00000,ko00001,ko01000,ko01011 - - - FAD_binding_4,MurB_C DYD2_k127_4402225_11 1121377.KB906398_gene2426 3.927e-07 62.0 COG1589@1|root,COG1589@2|Bacteria,1WJUK@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus M Cell division protein FtsQ ftsQ - - ko:K03589 ko04112,map04112 - - - ko00000,ko00001,ko03036 - - - POTRA_1 DYD2_k127_4402225_3 269799.Gmet_0416 6.166e-117 390.0 COG0849@1|root,COG0849@2|Bacteria,1MUSR@1224|Proteobacteria,42MS2@68525|delta/epsilon subdivisions,2WIQ0@28221|Deltaproteobacteria,43SXW@69541|Desulfuromonadales 28221|Deltaproteobacteria D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring ftsA - - ko:K03590 ko04112,map04112 - - - ko00000,ko00001,ko03036,ko04812 - - - FtsA,SHS2_FTSA DYD2_k127_4402225_1 1499967.BAYZ01000069_gene1912 2.005e-127 422.0 COG0206@1|root,COG0206@2|Bacteria,2NNSU@2323|unclassified Bacteria 2|Bacteria D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity ftsZ GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - ko:K03531 ko04112,map04112 - - - ko00000,ko00001,ko02048,ko03036,ko04812 - - - FtsZ_C,Tubulin DYD2_k127_4402225_9 903818.KI912268_gene1547 4.002e-27 115.0 COG1923@1|root,COG1923@2|Bacteria,3Y5JI@57723|Acidobacteria 57723|Acidobacteria S Hfq protein - - - - - - - - - - - - Hfq DYD2_k127_4402225_8 999541.bgla_1g16080 6.014e-35 140.0 COG1995@1|root,COG1995@2|Bacteria,1MX5W@1224|Proteobacteria,2VJPJ@28216|Betaproteobacteria,1K05M@119060|Burkholderiaceae 28216|Betaproteobacteria C Belongs to the PdxA family pdxA1 - 1.1.1.262,1.1.1.408,1.1.1.409 ko:K00097,ko:K22024 ko00750,ko01100,map00750,map01100 M00124 R05681,R05837,R07406 RC00089,RC00675,RC01475 ko00000,ko00001,ko00002,ko01000 - - - DUF1357_C,DUF1537,PdxA DYD2_k127_4402985_3 1144275.COCOR_02859 5.43e-48 176.0 COG3500@1|root,COG3500@2|Bacteria,1R67C@1224|Proteobacteria,4387V@68525|delta/epsilon subdivisions,2X3HN@28221|Deltaproteobacteria,2YW57@29|Myxococcales 28221|Deltaproteobacteria S Phage late control gene D protein (GPD) - - - - - - - - - - - - Phage_GPD DYD2_k127_4402985_2 84531.JMTZ01000038_gene3637 1.59e-116 378.0 COG3501@1|root,COG3501@2|Bacteria,1MU7Q@1224|Proteobacteria,1RZ3X@1236|Gammaproteobacteria 1236|Gammaproteobacteria S protein and some similarities with VgrG protein - - - - - - - - - - - - Phage_GPD DYD2_k127_4402985_1 261292.Nit79A3_1012 1.41e-141 474.0 28NRK@1|root,332DP@2|Bacteria,1R3A3@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_4402985_4 1144275.COCOR_02856 2.403e-47 173.0 COG3628@1|root,COG3628@2|Bacteria,1NCAC@1224|Proteobacteria 1224|Proteobacteria S GPW gp25 family protein - - - ko:K06903 - - - - ko00000 - - - GPW_gp25 DYD2_k127_4402985_0 1144275.COCOR_02855 2.794e-254 803.0 COG3299@1|root,COG3299@2|Bacteria,1MWKI@1224|Proteobacteria,42Q9A@68525|delta/epsilon subdivisions,2WM4B@28221|Deltaproteobacteria,2YVXE@29|Myxococcales 28221|Deltaproteobacteria S Baseplate J-like protein - - - - - - - - - - - - Baseplate_J DYD2_k127_440670_0 1123242.JH636434_gene3240 1.554e-107 354.0 COG0500@1|root,COG2226@2|Bacteria,2J3W1@203682|Planctomycetes 203682|Planctomycetes Q Methyltransferase domain - - - - - - - - - - - - - DYD2_k127_4408873_0 118168.MC7420_7452 2.784e-84 286.0 COG0671@1|root,COG0671@2|Bacteria,1G24P@1117|Cyanobacteria,1HA4N@1150|Oscillatoriales 1117|Cyanobacteria I phosphoesterase, PA-phosphatase related - - - - - - - - - - - - - DYD2_k127_4408873_1 640512.BC1003_2559 4.724e-48 195.0 COG3712@1|root,COG3712@2|Bacteria,1N941@1224|Proteobacteria,2VIKR@28216|Betaproteobacteria,1K3RG@119060|Burkholderiaceae 28216|Betaproteobacteria PT Membrane - - - - - - - - - - - - FecR DYD2_k127_4416759_2 247490.KSU1_A0077 4.05e-30 123.0 COG3259@1|root,COG3259@2|Bacteria,2IYS2@203682|Planctomycetes 203682|Planctomycetes C Nickel-dependent hydrogenase - - - - - - - - - - - - NiFeSe_Hases DYD2_k127_4416759_3 1121033.AUCF01000009_gene1117 2.485e-12 68.0 COG3259@1|root,COG3259@2|Bacteria,1QUQ7@1224|Proteobacteria,2TYKR@28211|Alphaproteobacteria,2JQJI@204441|Rhodospirillales 204441|Rhodospirillales C Nickel-dependent hydrogenase - - - - - - - - - - - - NiFeSe_Hases DYD2_k127_4416759_1 272134.KB731324_gene5865 3.413e-38 148.0 COG0680@1|root,COG0680@2|Bacteria,1G5ZU@1117|Cyanobacteria,1HBCF@1150|Oscillatoriales 1117|Cyanobacteria C Hydrogenase maturation protease - - - - - - - - - - - - HycI DYD2_k127_4416759_0 1123388.AQWU01000072_gene1325 3.119e-42 158.0 COG0474@1|root,COG0474@2|Bacteria,1WICW@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus P ATPase P-type (Transporting), HAD superfamily, subfamily IC pacL - 3.6.3.6,3.6.3.8 ko:K01535,ko:K01537 ko00190,map00190 - - - ko00000,ko00001,ko01000 3.A.3.2,3.A.3.3 - - Cation_ATPase,Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3 DYD2_k127_4426378_3 360910.BAV1229 0.0001879 47.0 COG2823@1|root,COG2823@2|Bacteria,1NIM8@1224|Proteobacteria,2WG5J@28216|Betaproteobacteria,3T7XW@506|Alcaligenaceae 28216|Betaproteobacteria S periplasmic or secreted lipoprotein - - - - - - - - - - - - BON DYD2_k127_4426378_2 1313172.YM304_06320 7.615e-07 54.0 2DCWG@1|root,2ZFKS@2|Bacteria 2|Bacteria S CsbD-like - - - - - - - - - - - - CsbD DYD2_k127_4426378_0 404380.Gbem_0454 6.151e-14 72.0 2EFZF@1|root,339RM@2|Bacteria,1NH6S@1224|Proteobacteria,42WYZ@68525|delta/epsilon subdivisions,2WT48@28221|Deltaproteobacteria,43VXN@69541|Desulfuromonadales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_4432258_1 251229.Chro_2825 4.816e-18 87.0 COG1670@1|root,COG1670@2|Bacteria,1G5DD@1117|Cyanobacteria,3VK96@52604|Pleurocapsales 1117|Cyanobacteria J COGs COG1670 Acetyltransferase including N-acetylase of ribosomal protein - - 2.3.1.128 ko:K03790 - - - - ko00000,ko01000,ko03009 - - - Acetyltransf_3 DYD2_k127_4432258_2 1122239.AULS01000001_gene1709 1.858e-09 61.0 2EI6P@1|root,33BY0@2|Bacteria,2H6KP@201174|Actinobacteria 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_4432258_0 1382359.JIAL01000001_gene3046 2.843e-133 439.0 COG1160@1|root,COG1160@2|Bacteria,3Y3AC@57723|Acidobacteria,2JIAS@204432|Acidobacteriia 204432|Acidobacteriia S GTPase that plays an essential role in the late steps of ribosome biogenesis der - - ko:K03977 - - - - ko00000,ko03009 - - - KH_dom-like,MMR_HSR1 DYD2_k127_4432544_1 240016.ABIZ01000001_gene1451 1.261e-40 154.0 COG1012@1|root,COG1012@2|Bacteria,46UJM@74201|Verrucomicrobia 74201|Verrucomicrobia C Aldehyde dehydrogenase family - - - - - - - - - - - - Aldedh DYD2_k127_4432544_2 1123278.KB893592_gene6006 1.787e-29 123.0 COG2442@1|root,COG2442@2|Bacteria,4P60R@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_4432544_3 56110.Oscil6304_3507 4.045e-27 114.0 COG4634@1|root,COG4634@2|Bacteria,1G7XW@1117|Cyanobacteria,1HC3F@1150|Oscillatoriales 1117|Cyanobacteria - - - - - - - - - - - - - - Mut7-C DYD2_k127_4432544_0 314230.DSM3645_13770 3.079e-108 365.0 COG0438@1|root,COG0438@2|Bacteria,2IXZX@203682|Planctomycetes 203682|Planctomycetes M PFAM Glycosyl transferase, group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_4433811_0 1267535.KB906767_gene5021 4.714e-104 343.0 COG0017@1|root,COG0017@2|Bacteria,3Y350@57723|Acidobacteria,2JI7K@204432|Acidobacteriia 204432|Acidobacteriia J class II (D K asnS - 6.1.1.22 ko:K01893 ko00970,map00970 M00359,M00360 R03648 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon DYD2_k127_4433811_1 517417.Cpar_1929 4.645e-35 148.0 COG3178@1|root,COG3178@2|Bacteria,1FEBN@1090|Chlorobi 1090|Chlorobi S PFAM aminoglycoside phosphotransferase - - 2.7.1.221 ko:K07102 ko00520,ko01100,map00520,map01100 - R08968,R11024 RC00002,RC00078 ko00000,ko00001,ko01000 - - - APH DYD2_k127_4442111_1 204669.Acid345_4326 4.288e-40 156.0 COG1235@1|root,COG1235@2|Bacteria,3Y3DW@57723|Acidobacteria,2JI3X@204432|Acidobacteriia 204432|Acidobacteriia S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B_2 DYD2_k127_4442111_0 278963.ATWD01000002_gene611 1.016e-104 355.0 COG0612@1|root,COG0612@2|Bacteria,3Y3M9@57723|Acidobacteria,2JHY4@204432|Acidobacteriia 204432|Acidobacteriia S Belongs to the peptidase M16 family - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_4442111_2 1121930.AQXG01000005_gene658 1.521e-05 52.0 COG1629@1|root,COG4771@2|Bacteria,4NEIG@976|Bacteroidetes 976|Bacteroidetes P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD2_k127_4447010_0 517418.Ctha_2023 5.527e-151 493.0 COG0367@1|root,COG0367@2|Bacteria,1FDEI@1090|Chlorobi 1090|Chlorobi F TIGRFAM asparagine synthase (glutamine-hydrolyzing) - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_4447010_1 330214.NIDE3009 1.76e-100 354.0 COG5360@1|root,COG5360@2|Bacteria 2|Bacteria S Heparinase II/III-like protein - - - - - - - - - - - - Hepar_II_III,Hepar_II_III_N DYD2_k127_4447010_2 1068978.AMETH_0129 3.784e-50 189.0 COG0500@1|root,COG2230@1|root,COG2226@2|Bacteria,COG2230@2|Bacteria,2I51K@201174|Actinobacteria,4EDST@85010|Pseudonocardiales 201174|Actinobacteria M Methyltransferase domain - - - - - - - - - - - - - DYD2_k127_4451729_0 1123368.AUIS01000014_gene2292 3.217e-279 895.0 COG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria,1RPAG@1236|Gammaproteobacteria 1236|Gammaproteobacteria Q COG1020 Non-ribosomal peptide synthetase modules and related proteins - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_4451729_1 591159.ACEZ01000045_gene2953 5.786e-224 720.0 COG1020@1|root,COG1020@2|Bacteria,2GISR@201174|Actinobacteria 201174|Actinobacteria Q Non-ribosomal peptide synthetase modules and related proteins - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_4458503_2 879212.DespoDRAFT_03090 1.587e-05 49.0 COG1943@1|root,COG1943@2|Bacteria 2|Bacteria L Transposase - - 3.2.2.21 ko:K03652 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - - DYD2_k127_4458503_0 469610.HMPREF0189_02337 2.541e-68 243.0 COG0252@1|root,COG0252@2|Bacteria,1MWIR@1224|Proteobacteria,2VJI2@28216|Betaproteobacteria,1KJ2S@119065|unclassified Burkholderiales 28216|Betaproteobacteria EJ Asparaginase ansB - 3.5.1.1,3.5.1.38 ko:K01424,ko:K05597 ko00220,ko00250,ko00460,ko00471,ko01100,ko01110,ko02020,map00220,map00250,map00460,map00471,map01100,map01110,map02020 - R00256,R00485,R01579 RC00010,RC02798 ko00000,ko00001,ko01000 - - - Asparaginase DYD2_k127_4458503_1 1463917.JODC01000010_gene3722 1.03e-06 60.0 COG0715@1|root,COG0715@2|Bacteria,2GNMC@201174|Actinobacteria 201174|Actinobacteria P ABC transporter substrate-binding protein - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 DYD2_k127_4458503_3 255470.cbdbA111 0.0002896 45.0 COG0507@1|root,COG1961@1|root,COG0507@2|Bacteria,COG1961@2|Bacteria,2G7BH@200795|Chloroflexi,34DMJ@301297|Dehalococcoidia 200795|Chloroflexi L Recombinase zinc beta ribbon domain - - - ko:K06400 - - - - ko00000 - - - Recombinase,Resolvase,Zn_ribbon_recom DYD2_k127_446559_1 696281.Desru_2033 3.624e-14 79.0 COG2204@1|root,COG2204@2|Bacteria,1VSKG@1239|Firmicutes,24ZP4@186801|Clostridia,263E4@186807|Peptococcaceae 186801|Clostridia T response regulator receiver - - - ko:K02481,ko:K07714 ko02020,map02020 M00500 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_446559_0 234267.Acid_7035 1.715e-161 524.0 COG0587@1|root,COG0587@2|Bacteria,3Y3YK@57723|Acidobacteria 57723|Acidobacteria L Belongs to the DNA polymerase type-C family. DnaE2 subfamily - - 2.7.7.7 ko:K14162 - - - - ko00000,ko01000,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon DYD2_k127_4466898_2 378806.STAUR_5458 1.985e-23 103.0 COG0596@1|root,COG0596@2|Bacteria,1MUVB@1224|Proteobacteria,42WB3@68525|delta/epsilon subdivisions,2WWR6@28221|Deltaproteobacteria,2YYFB@29|Myxococcales 28221|Deltaproteobacteria S alpha/beta hydrolase fold - - - - - - - - - - - - Abhydrolase_1 DYD2_k127_4466898_0 189425.PGRAT_08750 2.748e-101 336.0 COG1028@1|root,COG1028@2|Bacteria,1U2GS@1239|Firmicutes,4H9R9@91061|Bacilli,26QGX@186822|Paenibacillaceae 91061|Bacilli IQ Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ucpA - - - - - - - - - - - adh_short_C2 DYD2_k127_4466898_3 1267535.KB906767_gene2627 3.695e-15 76.0 COG0025@1|root,COG0025@2|Bacteria,3Y96Q@57723|Acidobacteria,2JNWA@204432|Acidobacteriia 2|Bacteria P Sodium/hydrogen exchanger family nhaP - - - - - - - - - - - Na_H_Exchanger DYD2_k127_4466898_4 1267535.KB906767_gene2627 1.133e-10 63.0 COG0025@1|root,COG0025@2|Bacteria,3Y96Q@57723|Acidobacteria,2JNWA@204432|Acidobacteriia 2|Bacteria P Sodium/hydrogen exchanger family nhaP - - - - - - - - - - - Na_H_Exchanger DYD2_k127_4466898_6 1157708.KB907478_gene1200 3.453e-05 46.0 COG0596@1|root,COG0596@2|Bacteria,1MUVB@1224|Proteobacteria,2VTEZ@28216|Betaproteobacteria,4AI6U@80864|Comamonadaceae 28216|Betaproteobacteria S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 DYD2_k127_4466898_1 1499967.BAYZ01000090_gene4936 5.254e-47 180.0 COG0823@1|root,COG0823@2|Bacteria,2NPHZ@2323|unclassified Bacteria 2|Bacteria U WD40-like Beta Propeller Repeat - - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PD40 DYD2_k127_4466898_5 1128421.JAGA01000002_gene587 3.092e-08 56.0 COG0013@1|root,COG0013@2|Bacteria,2NPQB@2323|unclassified Bacteria 2|Bacteria J Threonyl and Alanyl tRNA synthetase second additional domain alaS_2 - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD DYD2_k127_4479057_1 1123242.JH636434_gene5626 1.289e-86 295.0 COG4886@1|root,COG5426@1|root,COG4886@2|Bacteria,COG5426@2|Bacteria 2|Bacteria D von Willebrand factor, type A - - - - - - - - - - - - DUF285,Flg_new,LRR_5,LRR_6 DYD2_k127_4479057_0 234267.Acid_3616 1.194e-164 527.0 COG0436@1|root,COG0436@2|Bacteria,3Y2TF@57723|Acidobacteria 57723|Acidobacteria E PFAM aminotransferase, class I - - - ko:K10907 - - - - ko00000,ko01000,ko01007 - - - Aminotran_1_2 DYD2_k127_4479057_5 269799.Gmet_3216 0.0007773 51.0 COG0457@1|root,COG0457@2|Bacteria,1PEPM@1224|Proteobacteria,42Y8V@68525|delta/epsilon subdivisions,2WU79@28221|Deltaproteobacteria,43TE3@69541|Desulfuromonadales 28221|Deltaproteobacteria S Tetratricopeptide TPR_2 repeat protein - - - - - - - - - - - - TPR_11,TPR_16,TPR_19,TPR_8 DYD2_k127_4479057_2 1382359.JIAL01000001_gene1619 3.854e-59 231.0 COG0457@1|root,COG0741@1|root,COG0457@2|Bacteria,COG0741@2|Bacteria,3Y2UJ@57723|Acidobacteria,2JIUE@204432|Acidobacteriia 204432|Acidobacteriia M Transglycosylase SLT domain - - - ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 - SLT,TPR_16,YfiO DYD2_k127_4479057_4 204669.Acid345_2692 5.975e-21 107.0 COG1196@1|root,COG1196@2|Bacteria 2|Bacteria D nuclear chromosome segregation - - - - - - - - - - - - - DYD2_k127_4479057_3 251221.35212249 9.509e-25 109.0 COG0745@1|root,COG0745@2|Bacteria,1G6W5@1117|Cyanobacteria 1117|Cyanobacteria T Response regulator receiver - - - - - - - - - - - - Response_reg DYD2_k127_4483936_0 1173025.GEI7407_1132 8.928e-81 302.0 COG2202@1|root,COG5001@1|root,COG2202@2|Bacteria,COG5001@2|Bacteria,1G0SY@1117|Cyanobacteria,1H7V4@1150|Oscillatoriales 1117|Cyanobacteria T signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - - - - - - - - - - EAL,GAF_2,GGDEF,PAS_3,PAS_9 DYD2_k127_4483936_1 234267.Acid_4457 6.993e-72 248.0 COG0546@1|root,COG0546@2|Bacteria,3Y4NY@57723|Acidobacteria 57723|Acidobacteria S TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - - - - - - - - - - HAD_2 DYD2_k127_4487478_2 1267534.KB906755_gene4088 3.397e-30 130.0 COG4964@1|root,COG4964@2|Bacteria,3Y3DF@57723|Acidobacteria,2JHJ6@204432|Acidobacteriia 204432|Acidobacteriia U Belongs to the GSP D family - - - ko:K02280 - - - - ko00000,ko02035,ko02044 - - - BON,Secretin,T2SS-T3SS_pil_N DYD2_k127_4487478_1 1500894.JQNN01000001_gene3767 1.951e-45 173.0 COG3745@1|root,COG3745@2|Bacteria,1MW75@1224|Proteobacteria,2VMT6@28216|Betaproteobacteria,4763G@75682|Oxalobacteraceae 28216|Betaproteobacteria U Flp pilus assembly protein RcpC/CpaB cpaB - - ko:K02279 - - - - ko00000,ko02035,ko02044 - - - RcpC,SAF DYD2_k127_4487478_3 177439.DP1537 6.85e-17 87.0 COG4960@1|root,COG4960@2|Bacteria,1N7J0@1224|Proteobacteria 1224|Proteobacteria OU Peptidase A24A, prepilin type IV cpaA1 - 3.4.23.43 ko:K02278 - - - - ko00000,ko01000,ko02035,ko02044 - - - Peptidase_A24 DYD2_k127_4487478_5 1318628.MARLIPOL_12759 0.0006591 45.0 COG3847@1|root,COG3847@2|Bacteria 2|Bacteria U Flp Fap pilin component - - - ko:K02651 ko04112,map04112 - - - ko00000,ko00001,ko02035,ko02044 - - - Flp_Fap DYD2_k127_4487478_4 1123503.KB908056_gene1642 5.188e-05 48.0 COG3847@1|root,COG3847@2|Bacteria,1NGVU@1224|Proteobacteria,2UJE8@28211|Alphaproteobacteria,2KHE0@204458|Caulobacterales 204458|Caulobacterales U Flp Fap pilin component - - - ko:K02651 ko04112,map04112 - - - ko00000,ko00001,ko02035,ko02044 - - - Flp_Fap DYD2_k127_4487478_0 518766.Rmar_2028 2.091e-78 271.0 COG0457@1|root,COG3829@1|root,COG0457@2|Bacteria,COG3829@2|Bacteria,4PM5Y@976|Bacteroidetes,1FIME@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes K Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8,Sigma54_activat DYD2_k127_4491003_2 1303518.CCALI_00007 1.569e-11 76.0 COG3011@1|root,COG3011@2|Bacteria 2|Bacteria CH Protein conserved in bacteria yuxK - - - - - - - - - - - DUF393 DYD2_k127_4491003_4 1123023.JIAI01000002_gene4812 1.178e-05 51.0 2DRDY@1|root,33BC0@2|Bacteria 2|Bacteria S PFAM Coenzyme PQQ synthesis protein D (PqqD) - - - - - - - - - - - - PqqD DYD2_k127_4491003_1 1123020.AUIE01000001_gene2400 2.952e-38 156.0 COG1917@1|root,COG1917@2|Bacteria,1RF0X@1224|Proteobacteria,1S74S@1236|Gammaproteobacteria,1YEH2@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria S Cupin 2, conserved barrel domain protein - - - - - - - - - - - - - DYD2_k127_4491003_0 1499967.BAYZ01000030_gene1170 1.827e-40 163.0 COG0535@1|root,COG0535@2|Bacteria,2NRPX@2323|unclassified Bacteria 2|Bacteria S Radical SAM superfamily - - - ko:K22226 - - - - ko00000 - - - Fer4_12,Fer4_14,Radical_SAM DYD2_k127_4491003_5 877421.AUJT01000002_gene1040 0.000118 53.0 COG1493@1|root,COG1493@2|Bacteria,1V4IV@1239|Firmicutes,24ICW@186801|Clostridia,27PHD@186928|unclassified Lachnospiraceae 186801|Clostridia T Serine kinase of the HPr protein, regulates carbohydrate metabolism - - - - - - - - - - - - Hpr_kinase_C DYD2_k127_4491853_0 1288494.EBAPG3_12740 9.88e-35 137.0 COG4235@1|root,COG4235@2|Bacteria,1MY4J@1224|Proteobacteria,2VQ05@28216|Betaproteobacteria,3722S@32003|Nitrosomonadales 28216|Betaproteobacteria O Tetratricopeptide repeat cycH - - ko:K02200 - - - - ko00000 - - - TPR_16,TPR_2 DYD2_k127_4491853_1 1121459.AQXE01000003_gene1097 6.021e-05 50.0 COG0457@1|root,COG0457@2|Bacteria,1NB9P@1224|Proteobacteria,42V0X@68525|delta/epsilon subdivisions,2WRHQ@28221|Deltaproteobacteria,2MCIB@213115|Desulfovibrionales 28221|Deltaproteobacteria S Tetratricopeptide TPR_2 repeat protein - - - - - - - - - - - - ANAPC3,TPR_16,TPR_19,TPR_2,TPR_6,TPR_8 DYD2_k127_4500895_4 204669.Acid345_0912 1.64e-102 357.0 COG0457@1|root,COG0457@2|Bacteria,3Y74E@57723|Acidobacteria,2JK7F@204432|Acidobacteriia 204432|Acidobacteriia S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16 DYD2_k127_4500895_2 1382359.JIAL01000001_gene1409 7.279e-201 640.0 COG0457@1|root,COG0457@2|Bacteria,3Y3VT@57723|Acidobacteria,2JKYK@204432|Acidobacteriia 204432|Acidobacteriia S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_4500895_5 1304877.KI519399_gene5381 1.348e-14 86.0 COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria,1MVMG@1224|Proteobacteria,2TRVB@28211|Alphaproteobacteria,3JTIK@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria O Glycosyl transferase family 41 - - - - - - - - - - - - Glyco_transf_41,TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_4,TPR_8 DYD2_k127_4500895_1 204669.Acid345_0425 4.167e-213 679.0 COG0457@1|root,COG0457@2|Bacteria,3Y3WM@57723|Acidobacteria,2JI36@204432|Acidobacteriia 204432|Acidobacteriia S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_4500895_3 204669.Acid345_0425 3.596e-144 475.0 COG0457@1|root,COG0457@2|Bacteria,3Y3WM@57723|Acidobacteria,2JI36@204432|Acidobacteriia 204432|Acidobacteriia S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_4500895_0 215803.DB30_3103 4.151e-245 774.0 COG3525@1|root,COG3525@2|Bacteria,1MVDE@1224|Proteobacteria,42YD5@68525|delta/epsilon subdivisions,2X313@28221|Deltaproteobacteria,2YTXH@29|Myxococcales 28221|Deltaproteobacteria G Putative carbohydrate binding domain - - 3.2.1.52 ko:K12373 ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142 M00079 R00022,R06004,R11316 RC00049 ko00000,ko00001,ko00002,ko01000,ko03110 - GH20 - CHB_HEX,CHB_HEX_C,Glyco_hydro_20,Glyco_hydro_20b DYD2_k127_451045_1 243275.TDE_0227 3.922e-119 391.0 COG0863@1|root,COG0863@2|Bacteria,2JB1U@203691|Spirochaetes 203691|Spirochaetes H DNA methylase - - 2.1.1.113 ko:K00590 - - - - ko00000,ko01000,ko02048 - - - N6_N4_Mtase DYD2_k127_451045_0 1384049.CD29_12160 3.96e-121 398.0 COG1403@1|root,COG1403@2|Bacteria,1VTHA@1239|Firmicutes,4HZMH@91061|Bacilli 91061|Bacilli V HNH endonuclease - - - - - - - - - - - - - DYD2_k127_451045_3 671143.DAMO_2744 5.094e-17 83.0 COG0449@1|root,COG0449@2|Bacteria 2|Bacteria M glutamine-fructose-6-phosphate transaminase (isomerizing) activity - - - - - - - - - - - - ORF6N,SIS DYD2_k127_451045_2 1394178.AWOO02000004_gene2433 2.707e-99 330.0 COG0500@1|root,COG2226@2|Bacteria,2GNTH@201174|Actinobacteria 201174|Actinobacteria Q methyltransferase - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD2_k127_451045_4 1297569.MESS2_1000038 2.853e-07 55.0 COG0500@1|root,COG2226@2|Bacteria,1NWX3@1224|Proteobacteria,2TURQ@28211|Alphaproteobacteria,43PQD@69277|Phyllobacteriaceae 28211|Alphaproteobacteria Q Methyltransferase - - - - - - - - - - - - Methyltransf_11,Methyltransf_25,Ubie_methyltran DYD2_k127_4516900_1 1118054.CAGW01000024_gene451 2.891e-69 245.0 COG0624@1|root,COG0624@2|Bacteria,1TP2D@1239|Firmicutes,4HB9G@91061|Bacilli,26SYE@186822|Paenibacillaceae 91061|Bacilli E peptidase M20 dapE - 3.5.1.18 ko:K01439 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R02734 RC00064,RC00090 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20 DYD2_k127_4516900_0 926561.KB900620_gene3075 5.914e-205 657.0 COG0272@1|root,COG0272@2|Bacteria,1TPQ3@1239|Firmicutes,248AX@186801|Clostridia,3WA7S@53433|Halanaerobiales 186801|Clostridia L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA - 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 DYD2_k127_4516900_2 1121940.AUDZ01000007_gene2173 1.443e-05 53.0 2EIG1@1|root,33C7D@2|Bacteria,1NNA9@1224|Proteobacteria,1SH4C@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_4516900_3 1232410.KI421421_gene3557 0.0002089 49.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,43RYA@69541|Desulfuromonadales 28221|Deltaproteobacteria T Bacterial regulatory protein, Fis family gnfM - - ko:K07712 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_451970_2 1340493.JNIF01000004_gene73 5.751e-15 85.0 COG3712@1|root,COG3712@2|Bacteria,3Y5MB@57723|Acidobacteria 57723|Acidobacteria PT iron ion homeostasis - - - - - - - - - - - - FecR DYD2_k127_451970_1 243274.THEMA_00820 9.701e-18 88.0 COG1725@1|root,COG1725@2|Bacteria,2GDGX@200918|Thermotogae 200918|Thermotogae K PFAM regulatory protein GntR HTH - - - ko:K07979 - - - - ko00000,ko03000 - - - GntR DYD2_k127_451970_0 1173025.GEI7407_2899 2.297e-51 200.0 COG1233@1|root,COG1233@2|Bacteria,1G086@1117|Cyanobacteria,1H92F@1150|Oscillatoriales 1117|Cyanobacteria Q C-3'',4'' desaturase CrtD crtD - - - - - - - - - - - Amino_oxidase,NAD_binding_8 DYD2_k127_4519919_0 338963.Pcar_2455 1.562e-190 607.0 COG0060@1|root,COG0060@2|Bacteria,1MVBQ@1224|Proteobacteria,42MKB@68525|delta/epsilon subdivisions,2WJ4W@28221|Deltaproteobacteria,43RZV@69541|Desulfuromonadales 28221|Deltaproteobacteria J tRNA synthetases class I (K) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1,zf-FPG_IleRS DYD2_k127_452012_0 861299.J421_0666 4.973e-157 504.0 COG4447@1|root,COG4447@2|Bacteria,1ZSWZ@142182|Gemmatimonadetes 142182|Gemmatimonadetes S cellulose binding - - - - - - - - - - - - - DYD2_k127_452012_1 748280.NH8B_2766 3.184e-114 380.0 COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,2VI8X@28216|Betaproteobacteria 28216|Betaproteobacteria L DEAD DEAH box helicase lhr - - ko:K03724 - - - - ko00000,ko01000,ko03400 - - - DEAD,DEAD_assoc,Helicase_C DYD2_k127_4523159_3 118168.MC7420_1191 9.452e-11 72.0 2F0RE@1|root,33TTT@2|Bacteria,1GDEI@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_4523159_2 2002.JOEQ01000013_gene5536 1.456e-24 109.0 COG2764@1|root,COG2764@2|Bacteria,2I27E@201174|Actinobacteria,4EQN9@85012|Streptosporangiales 201174|Actinobacteria S Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD2_k127_4523159_1 1336243.JAEA01000014_gene3653 1.055e-42 160.0 COG2940@1|root,COG2940@2|Bacteria,1MWFB@1224|Proteobacteria,2U05I@28211|Alphaproteobacteria 28211|Alphaproteobacteria S SET domain - - - ko:K07117 - - - - ko00000 - - - SET DYD2_k127_4523159_0 215803.DB30_0398 3.968e-81 276.0 COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,42Y0Z@68525|delta/epsilon subdivisions,2WT7J@28221|Deltaproteobacteria,2YWBV@29|Myxococcales 28221|Deltaproteobacteria Q Flavin containing amine oxidoreductase - - - - - - - - - - - - Amino_oxidase,NAD_binding_8 DYD2_k127_4563361_2 472759.Nhal_2461 0.0008194 49.0 COG2825@1|root,COG2825@2|Bacteria,1RD8X@1224|Proteobacteria,1RQIE@1236|Gammaproteobacteria,1X2GE@135613|Chromatiales 135613|Chromatiales M Belongs to the skp family - - - ko:K06142 - - - - ko00000 - - - OmpH DYD2_k127_4563361_0 278963.ATWD01000001_gene3533 1.578e-138 478.0 COG4775@1|root,COG4775@2|Bacteria,3Y2Q9@57723|Acidobacteria,2JHYD@204432|Acidobacteriia 204432|Acidobacteriia M TIGRFAM outer membrane protein assembly complex, YaeT protein - - - ko:K07277 - - - - ko00000,ko02000,ko03029 1.B.33 - - Bac_surface_Ag,POTRA DYD2_k127_4563361_1 1382359.JIAL01000001_gene2740 5.082e-41 155.0 COG0542@1|root,COG0542@2|Bacteria,3Y35D@57723|Acidobacteria,2JIRK@204432|Acidobacteriia 204432|Acidobacteriia O Belongs to the ClpA ClpB family - - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N DYD2_k127_4565804_0 234267.Acid_3254 5.961e-67 235.0 COG4783@1|root,COG4783@2|Bacteria,3Y3GF@57723|Acidobacteria 57723|Acidobacteria S PFAM peptidase M48 Ste24p - - - - - - - - - - - - Peptidase_M48 DYD2_k127_4565804_1 177437.HRM2_02520 4.935e-45 175.0 COG5495@1|root,COG5495@2|Bacteria,1RBEZ@1224|Proteobacteria,42PJR@68525|delta/epsilon subdivisions,2WPBQ@28221|Deltaproteobacteria,2MI0V@213118|Desulfobacterales 28221|Deltaproteobacteria S Domain of unknown function (DUF2520) - - - - - - - - - - - - DUF2520,Rossmann-like DYD2_k127_4565804_2 1278073.MYSTI_06867 6.446e-45 180.0 2BVHD@1|root,32QVZ@2|Bacteria,1N6CE@1224|Proteobacteria,430V5@68525|delta/epsilon subdivisions,2X3NG@28221|Deltaproteobacteria,2YWNE@29|Myxococcales 28221|Deltaproteobacteria - - - - - - - - - - - - - - PMT_2 DYD2_k127_456976_2 1347392.CCEZ01000049_gene1296 1.839e-29 122.0 COG1074@1|root,COG1074@2|Bacteria,1TQ35@1239|Firmicutes,248ZF@186801|Clostridia,36E2W@31979|Clostridiaceae 186801|Clostridia L ATP-dependent helicase nuclease subunit A - - 3.6.4.12 ko:K16898 - - - - ko00000,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C DYD2_k127_456976_0 1304284.L21TH_1713 1.409e-62 247.0 COG3857@1|root,COG3857@2|Bacteria,1TQJW@1239|Firmicutes,2487T@186801|Clostridia,36EE8@31979|Clostridiaceae 186801|Clostridia L The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation addB - 3.6.4.12 ko:K16899 - - - - ko00000,ko01000,ko03400 - - - Exonuc_V_gamma,PDDEXK_1,UvrD-helicase,UvrD_C DYD2_k127_456976_1 316067.Geob_1385 2.745e-49 180.0 COG1322@1|root,COG1322@2|Bacteria,1MWHV@1224|Proteobacteria,42NDS@68525|delta/epsilon subdivisions,2WJDE@28221|Deltaproteobacteria,43V4T@69541|Desulfuromonadales 28221|Deltaproteobacteria S RmuC family - - - ko:K09760 - - - - ko00000 - - - RmuC DYD2_k127_4570871_1 234267.Acid_4413 3.448e-76 266.0 COG1134@1|root,COG1134@2|Bacteria,3Y72D@57723|Acidobacteria 57723|Acidobacteria GM Wzt C-terminal domain - - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C DYD2_k127_4570871_2 748449.Halha_1468 1.422e-08 67.0 COG0500@1|root,COG2226@2|Bacteria,1U5XV@1239|Firmicutes,24A44@186801|Clostridia,3WBFK@53433|Halanaerobiales 186801|Clostridia Q PFAM methyltransferase arsM - 2.1.1.137 ko:K07755 - - - - ko00000,ko01000 - - - Methyltransf_31 DYD2_k127_4570871_0 555793.WSK_4263 8.194e-87 297.0 COG0438@1|root,COG0438@2|Bacteria,1NF7D@1224|Proteobacteria,2U52N@28211|Alphaproteobacteria 28211|Alphaproteobacteria M glycosyl transferase group 1 - - - - - - - - - - - - Glycos_transf_1,Methyltransf_11 DYD2_k127_4571560_0 1379698.RBG1_1C00001G1345 4.523e-110 372.0 COG2203@1|root,COG2208@1|root,COG2203@2|Bacteria,COG2208@2|Bacteria,2NQ3V@2323|unclassified Bacteria 2|Bacteria KT COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit rsbU - 3.1.3.3,4.6.1.1 ko:K01768,ko:K07315 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000,ko03021 - - - GAF,GAF_2,HATPase_c_2,SSF,SpoIIE DYD2_k127_4571560_1 240015.ACP_3265 1.148e-30 129.0 COG2856@1|root,COG2856@2|Bacteria 2|Bacteria E Zn peptidase irrE - - ko:K21686 - - - - ko00000,ko03000 - - - DUF4344,Peptidase_M78 DYD2_k127_4571560_3 1123075.AUDP01000016_gene3411 0.0006036 50.0 COG1396@1|root,COG1396@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - Cupin_2,HTH_19,HTH_3,HTH_31 DYD2_k127_4571560_2 926566.Terro_0748 1.19e-20 99.0 COG0793@1|root,COG0793@2|Bacteria,3Y3KP@57723|Acidobacteria,2JHNE@204432|Acidobacteriia 204432|Acidobacteriia M Belongs to the peptidase S41A family - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 DYD2_k127_4575771_3 671143.DAMO_0621 2.584e-74 253.0 COG1452@1|root,COG1452@2|Bacteria 2|Bacteria M lipopolysaccharide transport - - - ko:K22110 - - - - ko00000,ko02000 1.B.35.1,1.B.35.2 - - Glyco_hydro_63 DYD2_k127_4575771_4 221288.JH992901_gene5147 5.583e-28 115.0 COG2258@1|root,COG2258@2|Bacteria,1G4BR@1117|Cyanobacteria,1JKN0@1189|Stigonemataceae 1117|Cyanobacteria S MOSC domain - - - - - - - - - - - - 3-alpha,MOSC DYD2_k127_4575771_2 118173.KB235914_gene2349 2.58e-88 295.0 COG0431@1|root,COG0431@2|Bacteria,1G3AZ@1117|Cyanobacteria,1HAU3@1150|Oscillatoriales 1117|Cyanobacteria S NADPH-dependent FMN reductase - - - - - - - - - - - - FMN_red DYD2_k127_4575771_1 251229.Chro_3611 1.749e-142 469.0 COG0346@1|root,COG0346@2|Bacteria,1G29P@1117|Cyanobacteria,3VJTR@52604|Pleurocapsales 1117|Cyanobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD2_k127_4575771_0 861299.J421_1872 1.151e-229 718.0 COG2303@1|root,COG2303@2|Bacteria 2|Bacteria E choline dehydrogenase activity - - - - - - - - - - - - FAD_binding_2,GMC_oxred_C,GMC_oxred_N DYD2_k127_4587012_1 215803.DB30_5632 2.163e-82 277.0 COG5285@1|root,COG5285@2|Bacteria,1Q78R@1224|Proteobacteria,438ZF@68525|delta/epsilon subdivisions,2X44Q@28221|Deltaproteobacteria,2YY90@29|Myxococcales 28221|Deltaproteobacteria Q Phytanoyl-CoA dioxygenase (PhyH) - - 1.14.11.18 ko:K00477 ko04146,map04146 - - - ko00000,ko00001,ko01000 - - - PhyH DYD2_k127_4587012_0 204669.Acid345_0779 3.647e-92 316.0 COG1793@1|root,COG1793@2|Bacteria,3Y2VV@57723|Acidobacteria,2JIJ7@204432|Acidobacteriia 204432|Acidobacteriia L DNA ligase D, 3'-phosphoesterase domain - - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,LigD_N DYD2_k127_4587012_3 401053.AciPR4_1805 3.586e-41 160.0 COG1974@1|root,COG1974@2|Bacteria,3Y47Z@57723|Acidobacteria,2JIJ3@204432|Acidobacteriia 204432|Acidobacteriia K Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair lexA - 3.4.21.88 ko:K01356 - M00729 - - ko00000,ko00002,ko01000,ko01002,ko03400 - - - LexA_DNA_bind,Peptidase_S24 DYD2_k127_4587012_2 204669.Acid345_3454 1.827e-45 173.0 COG2930@1|root,COG2930@2|Bacteria,3Y2F0@57723|Acidobacteria,2JIT6@204432|Acidobacteriia 204432|Acidobacteriia S Las17-binding protein actin regulator - - - - - - - - - - - - Ysc84 DYD2_k127_4587012_5 1267533.KB906734_gene3780 1.987e-23 111.0 COG0526@1|root,COG0526@2|Bacteria,3Y5DD@57723|Acidobacteria,2JJQP@204432|Acidobacteriia 204432|Acidobacteriia O Thioredoxin-like - - - - - - - - - - - - AhpC-TSA DYD2_k127_4587012_6 682795.AciX8_2370 3.572e-18 91.0 2AAGQ@1|root,30ZTQ@2|Bacteria,3Y4IN@57723|Acidobacteria,2JJDR@204432|Acidobacteriia 204432|Acidobacteriia S Protein of unknown function with PCYCGC motif - - - - - - - - - - - - PCYCGC DYD2_k127_4587012_4 1267535.KB906767_gene4961 8.867e-24 109.0 COG0526@1|root,COG0526@2|Bacteria,3Y4K8@57723|Acidobacteria 57723|Acidobacteria CO PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - ko:K02199 - - - - ko00000,ko03110 - - - AhpC-TSA DYD2_k127_4587012_7 177437.HRM2_06820 7.712e-15 75.0 COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,42M7A@68525|delta/epsilon subdivisions,2WJ8P@28221|Deltaproteobacteria,2MHRE@213118|Desulfobacterales 28221|Deltaproteobacteria E TIGRFAM glutamine synthetase, type I glnA - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C,Gln-synt_N DYD2_k127_4601735_0 1267534.KB906759_gene1883 2.362e-180 569.0 COG1064@1|root,COG1064@2|Bacteria 2|Bacteria P alcohol dehydrogenase adhC - 1.1.1.1 ko:K00001,ko:K13953 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N DYD2_k127_4601735_1 37919.EP51_02730 2.689e-83 282.0 COG0346@1|root,COG0346@2|Bacteria,2IKTR@201174|Actinobacteria,4G18K@85025|Nocardiaceae 201174|Actinobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD2_k127_4601735_2 1353531.AZNX01000005_gene3293 2.809e-18 87.0 COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,4B9N5@82115|Rhizobiaceae 28211|Alphaproteobacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,PAS_9 DYD2_k127_4604166_0 1267535.KB906767_gene3177 5.166e-226 707.0 COG1158@1|root,COG1158@2|Bacteria,3Y2V3@57723|Acidobacteria,2JHRC@204432|Acidobacteriia 204432|Acidobacteriia K Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template rho - - ko:K03628 ko03018,map03018 - - - ko00000,ko00001,ko03019,ko03021 - - - ATP-synt_ab,Rho_N,Rho_RNA_bind DYD2_k127_4604166_1 1089553.Tph_c11790 3.176e-66 237.0 COG0297@1|root,COG0297@2|Bacteria,1TQ4M@1239|Firmicutes,248G1@186801|Clostridia,42F2U@68295|Thermoanaerobacterales 186801|Clostridia F Synthesizes alpha-1,4-glucan chains using ADP-glucose glgA - 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5,Glycos_transf_1,HHH_3 DYD2_k127_4607495_5 316274.Haur_3709 1.156e-18 99.0 COG1807@1|root,COG1807@2|Bacteria 2|Bacteria M 4-amino-4-deoxy-L-arabinose transferase activity - - - - - - - - - - - - PMT_2 DYD2_k127_4607495_3 1121015.N789_03400 1.153e-57 211.0 COG0110@1|root,COG0110@2|Bacteria,1NMFJ@1224|Proteobacteria 1224|Proteobacteria S maltose O-acetyltransferase activity - - - - - - - - - - - - Hexapep DYD2_k127_4607495_2 316274.Haur_3711 2.877e-63 231.0 COG4641@1|root,COG4641@2|Bacteria 2|Bacteria M Protein conserved in bacteria - - - ko:K06320 - - - - ko00000 - - - DUF3880,Glyco_trans_1_2,Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2 DYD2_k127_4607495_1 316274.Haur_3712 1.193e-73 263.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_4607495_4 272844.PAB0796 6.37e-26 120.0 COG0463@1|root,arCOG01385@2157|Archaea,2Y7SN@28890|Euryarchaeota,2456V@183968|Thermococci 183968|Thermococci M Glycosyl transferase family group 2 - - 2.4.1.335 ko:K21305 - - - - ko00000,ko01000,ko01003 - GT2 - Glycos_transf_2 DYD2_k127_4607495_0 945713.IALB_2724 2.129e-244 767.0 COG2192@1|root,COG2192@2|Bacteria 2|Bacteria O nodulation - - - ko:K00612 - - - - ko00000,ko01000 - - - Carbam_trans_C,Carbam_trans_N DYD2_k127_4608768_1 251229.Chro_3613 1.85e-98 330.0 COG0580@1|root,COG0580@2|Bacteria,1G3MJ@1117|Cyanobacteria 1117|Cyanobacteria U Belongs to the MIP aquaporin (TC 1.A.8) family - - - ko:K06188 - - - - ko00000,ko02000 1.A.8 - - MIP DYD2_k127_4608768_3 1112274.KI911560_gene1582 1.266e-08 61.0 COG5660@1|root,COG5660@2|Bacteria,1NH4R@1224|Proteobacteria,2W81G@28216|Betaproteobacteria,2KNB0@206350|Nitrosomonadales 206350|Nitrosomonadales S Putative zinc-finger - - - - - - - - - - - - zf-HC2 DYD2_k127_4608768_2 1307761.L21SP2_2170 6.58e-13 81.0 COG0296@1|root,COG0296@2|Bacteria,2J6C4@203691|Spirochaetes 203691|Spirochaetes G PFAM Carbohydrate-binding module 48 (Isoamylase N-terminal domain) - - - - - - - - - - - - AMPK1_CBM DYD2_k127_4608768_0 448385.sce7696 2.636e-99 340.0 COG1404@1|root,COG1404@2|Bacteria,1PEJJ@1224|Proteobacteria,438RE@68525|delta/epsilon subdivisions,2X3YD@28221|Deltaproteobacteria,2YXKA@29|Myxococcales 28221|Deltaproteobacteria O Subtilase family - - - - - - - - - - - - Peptidase_S8 DYD2_k127_4614239_0 234267.Acid_5780 4.022e-111 397.0 COG0515@1|root,COG3899@1|root,COG0515@2|Bacteria,COG3899@2|Bacteria 2|Bacteria T PFAM Protein kinase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - AAA_16,BTAD,TPR_12,TPR_8,Trans_reg_C DYD2_k127_4614239_3 477974.Daud_0777 3.261e-05 50.0 COG1476@1|root,COG1476@2|Bacteria,1UV40@1239|Firmicutes,24RHZ@186801|Clostridia 186801|Clostridia K PFAM helix-turn-helix domain protein - - - ko:K07729 - - - - ko00000,ko03000 - - - HTH_3 DYD2_k127_4614239_2 1532557.JL37_06670 5.773e-07 62.0 COG0666@1|root,COG0666@2|Bacteria,1N3CW@1224|Proteobacteria,2VVKN@28216|Betaproteobacteria,3T3UY@506|Alcaligenaceae 28216|Betaproteobacteria S Ankyrin repeat - GO:0000122,GO:0000139,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001190,GO:0001568,GO:0001570,GO:0001666,GO:0001837,GO:0001932,GO:0001934,GO:0001944,GO:0001947,GO:0002009,GO:0002011,GO:0002193,GO:0002376,GO:0002682,GO:0002683,GO:0003007,GO:0003143,GO:0003151,GO:0003157,GO:0003158,GO:0003160,GO:0003169,GO:0003170,GO:0003171,GO:0003174,GO:0003176,GO:0003177,GO:0003179,GO:0003180,GO:0003181,GO:0003183,GO:0003184,GO:0003188,GO:0003190,GO:0003192,GO:0003197,GO:0003198,GO:0003203,GO:0003205,GO:0003206,GO:0003207,GO:0003208,GO:0003209,GO:0003213,GO:0003214,GO:0003222,GO:0003229,GO:0003230,GO:0003231,GO:0003241,GO:0003250,GO:0003252,GO:0003256,GO:0003272,GO:0003273,GO:0003279,GO:0003281,GO:0003330,GO:0003332,GO:0003344,GO:0003348,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0005912,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006955,GO:0006996,GO:0007049,GO:0007050,GO:0007154,GO:0007162,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007507,GO:0007517,GO:0008150,GO:0008152,GO:0008284,GO:0008285,GO:0008593,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010002,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010594,GO:0010596,GO:0010604,GO:0010605,GO:0010611,GO:0010614,GO:0010628,GO:0010629,GO:0010632,GO:0010633,GO:0010646,GO:0010647,GO:0010648,GO:0010717,GO:0010718,GO:0010720,GO:0010721,GO:0010810,GO:0010812,GO:0010830,GO:0010832,GO:0010941,GO:0010942,GO:0012505,GO:0014013,GO:0014014,GO:0014015,GO:0014031,GO:0014706,GO:0014741,GO:0014743,GO:0016020,GO:0016043,GO:0016070,GO:0016202,GO:0016324,GO:0016477,GO:0016525,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030155,GO:0030234,GO:0030278,GO:0030279,GO:0030334,GO:0030335,GO:0030336,GO:0030510,GO:0030513,GO:0030514,GO:0030855,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0031984,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032354,GO:0032501,GO:0032502,GO:0032774,GO:0032870,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034698,GO:0035050,GO:0035051,GO:0035148,GO:0035239,GO:0035265,GO:0035295,GO:0035886,GO:0035924,GO:0036003,GO:0036293,GO:0036294,GO:0040007,GO:0040008,GO:0040009,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0042127,GO:0042175,GO:0042221,GO:0042325,GO:0042327,GO:0042692,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043408,GO:0043410,GO:0043502,GO:0043535,GO:0043537,GO:0043565,GO:0043618,GO:0043620,GO:0044057,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044782,GO:0045177,GO:0045445,GO:0045446,GO:0045595,GO:0045596,GO:0045597,GO:0045661,GO:0045662,GO:0045667,GO:0045668,GO:0045685,GO:0045686,GO:0045687,GO:0045747,GO:0045765,GO:0045786,GO:0045844,GO:0045892,GO:0045893,GO:0045926,GO:0045927,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0045967,GO:0046425,GO:0046427,GO:0046483,GO:0046578,GO:0046579,GO:0046620,GO:0046622,GO:0048468,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048598,GO:0048634,GO:0048636,GO:0048638,GO:0048639,GO:0048644,GO:0048646,GO:0048699,GO:0048710,GO:0048711,GO:0048713,GO:0048715,GO:0048729,GO:0048731,GO:0048738,GO:0048762,GO:0048844,GO:0048845,GO:0048856,GO:0048863,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050922,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051056,GO:0051057,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051145,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051271,GO:0051272,GO:0051674,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051962,GO:0055001,GO:0055006,GO:0055008,GO:0055010,GO:0055021,GO:0055023,GO:0055024,GO:0055025,GO:0060039,GO:0060043,GO:0060045,GO:0060251,GO:0060253,GO:0060255,GO:0060271,GO:0060284,GO:0060317,GO:0060379,GO:0060411,GO:0060412,GO:0060415,GO:0060419,GO:0060420,GO:0060421,GO:0060429,GO:0060485,GO:0060537,GO:0060548,GO:0060560,GO:0060562,GO:0060837,GO:0060840,GO:0060841,GO:0060842,GO:0060843,GO:0060947,GO:0060948,GO:0060956,GO:0060973,GO:0060976,GO:0060977,GO:0060979,GO:0060982,GO:0061061,GO:0061311,GO:0061314,GO:0061371,GO:0061383,GO:0061384,GO:0061418,GO:0061419,GO:0065007,GO:0065009,GO:0070013,GO:0070161,GO:0070167,GO:0070168,GO:0070372,GO:0070374,GO:0070482,GO:0070848,GO:0070887,GO:0070925,GO:0071310,GO:0071363,GO:0071371,GO:0071372,GO:0071453,GO:0071456,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0072132,GO:0072358,GO:0072359,GO:0080090,GO:0090049,GO:0090051,GO:0090092,GO:0090100,GO:0090101,GO:0090257,GO:0090287,GO:0090288,GO:0090304,GO:0097084,GO:0097150,GO:0097159,GO:0097659,GO:0098588,GO:0098590,GO:0098727,GO:0098772,GO:0098791,GO:0098827,GO:0120031,GO:0120036,GO:0140110,GO:1901201,GO:1901213,GO:1901342,GO:1901343,GO:1901360,GO:1901362,GO:1901363,GO:1901522,GO:1901532,GO:1901533,GO:1901576,GO:1901861,GO:1901863,GO:1902337,GO:1902339,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903053,GO:1903054,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903531,GO:1903670,GO:1903671,GO:1903706,GO:1903707,GO:1904747,GO:1904748,GO:1904892,GO:1904894,GO:1905314,GO:1905456,GO:1905457,GO:1990837,GO:2000026,GO:2000027,GO:2000112,GO:2000113,GO:2000136,GO:2000137,GO:2000145,GO:2000146,GO:2000147,GO:2000181,GO:2000209,GO:2000736,GO:2000737,GO:2000811,GO:2000826,GO:2000973,GO:2000974,GO:2001026,GO:2001027,GO:2001141 - ko:K06867 - - - - ko00000 - - - Ank_2,Ank_3,Ank_4 DYD2_k127_4614239_1 153948.NAL212_2041 1.01e-57 203.0 COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,2VKDZ@28216|Betaproteobacteria,371SX@32003|Nitrosomonadales 28216|Betaproteobacteria C Aconitase C-terminal domain acnA - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C DYD2_k127_4614357_3 1429851.X548_02695 8.41e-41 154.0 COG0599@1|root,COG0599@2|Bacteria,1N38Z@1224|Proteobacteria,1S5G6@1236|Gammaproteobacteria,1X6C8@135614|Xanthomonadales 135614|Xanthomonadales S Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - - - - - - - - - - CMD DYD2_k127_4614357_0 247490.KSU1_C0443 2.497e-199 644.0 COG0526@1|root,COG3391@1|root,COG0526@2|Bacteria,COG3391@2|Bacteria,2IXWV@203682|Planctomycetes 203682|Planctomycetes CO PFAM NHL repeat - - - - - - - - - - - - NHL,Thioredoxin_8 DYD2_k127_4614357_1 1234364.AMSF01000053_gene1294 6.021e-84 286.0 COG2193@1|root,COG2193@2|Bacteria,1RAQ8@1224|Proteobacteria,1S2G2@1236|Gammaproteobacteria,1X60R@135614|Xanthomonadales 135614|Xanthomonadales P Bacterioferritin (cytochrome b1) - - 1.16.3.1 ko:K03594 ko00860,map00860 - R00078 RC02758 ko00000,ko00001,ko01000 - - - Ferritin DYD2_k127_4614357_4 649747.HMPREF0083_01405 2.176e-33 145.0 COG0705@1|root,COG0705@2|Bacteria,1TQXT@1239|Firmicutes,4HCDF@91061|Bacilli,276M6@186822|Paenibacillaceae 91061|Bacilli S Rhomboid family gluP - 3.4.21.105 ko:K19225 - - - - ko00000,ko01000,ko01002 - - - Rhomboid,TPR_2,TPR_8 DYD2_k127_4614357_2 316274.Haur_1203 2.571e-53 193.0 COG1250@1|root,COG1250@2|Bacteria,2G6EB@200795|Chloroflexi 200795|Chloroflexi C 3-hydroxyacyl-CoA dehydrogenase domain protein - - 1.1.1.157 ko:K00074 ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120 - R01976,R05576,R06941 RC00029,RC00117 ko00000,ko00001,ko01000 - - - 3HCDH,3HCDH_N DYD2_k127_4622142_1 1340493.JNIF01000003_gene4574 2.75e-48 174.0 COG4102@1|root,COG4102@2|Bacteria 2|Bacteria S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD2_k127_4622142_0 1178537.BA1_14108 4.323e-92 311.0 COG1715@1|root,COG1715@2|Bacteria,1VGCJ@1239|Firmicutes,4IPF4@91061|Bacilli,1ZPU1@1386|Bacillus 91061|Bacilli V Restriction endonuclease - - - - - - - - - - - - - DYD2_k127_4622870_0 1461693.ATO10_05916 2.908e-107 358.0 COG1961@1|root,COG1961@2|Bacteria 2|Bacteria L recombinase activity - - - - - - - - - - - - Recombinase,Resolvase,Zn_ribbon_recom DYD2_k127_4622870_1 41431.PCC8801_2626 6.402e-37 151.0 COG0644@1|root,COG0644@2|Bacteria,1G678@1117|Cyanobacteria 1117|Cyanobacteria C Tryptophan halogenase - - - - - - - - - - - - Trp_halogenase DYD2_k127_4631979_1 1996.JOFO01000063_gene2317 1.213e-32 141.0 2DB7W@1|root,2Z7P1@2|Bacteria,2GP9W@201174|Actinobacteria,4EIEX@85012|Streptosporangiales 201174|Actinobacteria S Domain of unknown function (DUF4331) - - - - - - - - - - - - DUF4331 DYD2_k127_4631979_0 234267.Acid_5048 1.376e-51 201.0 COG0457@1|root,COG0457@2|Bacteria,3Y7WN@57723|Acidobacteria 57723|Acidobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16 DYD2_k127_4656434_1 1121012.AUKX01000010_gene1962 1.735e-15 82.0 COG2259@1|root,COG2259@2|Bacteria,4NVWM@976|Bacteroidetes,1IC7W@117743|Flavobacteriia,23HQY@178469|Arenibacter 976|Bacteroidetes S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX DYD2_k127_4656434_0 1123242.JH636434_gene3868 5.073e-83 294.0 COG1520@1|root,COG1520@2|Bacteria,2IYRB@203682|Planctomycetes 1123242.JH636434_gene3868|- S beta-propeller repeat - - - - - - - - - - - - - DYD2_k127_466158_0 655815.ZPR_1992 2.01e-41 165.0 COG0308@1|root,COG0308@2|Bacteria,4NG5Q@976|Bacteroidetes,1HYK9@117743|Flavobacteriia 976|Bacteroidetes E peptidase M1 - - 3.4.11.2 ko:K01256 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M1 DYD2_k127_466158_1 1432056.X781_2700 3.465e-10 68.0 COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,1RNHY@1236|Gammaproteobacteria,1Y7G2@135625|Pasteurellales 135625|Pasteurellales O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins dnaJ - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG DYD2_k127_466158_2 331869.BAL199_16253 1.459e-08 61.0 COG0346@1|root,COG0346@2|Bacteria,1RG1A@1224|Proteobacteria,2U7AV@28211|Alphaproteobacteria 28211|Alphaproteobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD2_k127_466191_2 42256.RradSPS_2976 1.351e-15 83.0 COG3453@1|root,COG3453@2|Bacteria 2|Bacteria J Protein conserved in bacteria - - - - - - - - - - - - DUF442 DYD2_k127_466191_3 1499967.BAYZ01000009_gene5259 3.662e-14 82.0 COG0251@1|root,COG0251@2|Bacteria 2|Bacteria J oxidation-reduction process - - 3.5.99.10 ko:K09022 - - R11098,R11099 RC03275,RC03354 ko00000,ko01000 - - - Ribonuc_L-PSP DYD2_k127_466191_4 1110502.TMO_1052 4.94e-14 82.0 2C4GE@1|root,2ZF8M@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_466191_1 448385.sce7110 5.564e-126 408.0 COG0454@1|root,COG0456@2|Bacteria,1PWDA@1224|Proteobacteria,43586@68525|delta/epsilon subdivisions,2WZJ8@28221|Deltaproteobacteria,2Z296@29|Myxococcales 28221|Deltaproteobacteria K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 DYD2_k127_466191_0 1250232.JQNJ01000001_gene2470 1.908e-155 495.0 COG1228@1|root,COG1228@2|Bacteria,4NISN@976|Bacteroidetes,1HZDE@117743|Flavobacteriia 976|Bacteroidetes Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_4666396_1 1121430.JMLG01000001_gene2293 9.225e-31 136.0 COG1763@1|root,COG1763@2|Bacteria,1VFA0@1239|Firmicutes,24IYN@186801|Clostridia,262F6@186807|Peptococcaceae 186801|Clostridia H Molybdopterin-guanine dinucleotide biosynthesis mobB - 2.7.7.77 ko:K03753,ko:K13818 ko00790,ko01100,map00790,map01100 - R11581 - ko00000,ko00001,ko01000 - - - MobB,NTP_transf_3 DYD2_k127_4666396_0 589865.DaAHT2_0551 2.874e-56 211.0 COG2191@1|root,COG2191@2|Bacteria,1RBNI@1224|Proteobacteria,42QZP@68525|delta/epsilon subdivisions,2WMY0@28221|Deltaproteobacteria,2MJH4@213118|Desulfobacterales 28221|Deltaproteobacteria C FmdE, Molybdenum formylmethanofuran dehydrogenase operon - - 1.2.7.12 ko:K11261 ko00680,ko01100,ko01120,ko01200,map00680,map01100,map01120,map01200 M00567 R03015,R08060,R11743 RC00197,RC00323 ko00000,ko00001,ko00002,ko01000 - - - FmdE,zf-dskA_traR DYD2_k127_4666396_2 269799.Gmet_0062 8.984e-08 57.0 COG1802@1|root,COG1802@2|Bacteria,1MWG2@1224|Proteobacteria,42P4Y@68525|delta/epsilon subdivisions,2WM8E@28221|Deltaproteobacteria,43S47@69541|Desulfuromonadales 28221|Deltaproteobacteria K regulatory protein GntR HTH - - - - - - - - - - - - FCD,GntR DYD2_k127_4674604_0 1173022.Cri9333_3539 7.545e-226 709.0 COG1091@1|root,COG2723@1|root,COG1091@2|Bacteria,COG2723@2|Bacteria,1G1JP@1117|Cyanobacteria,1HES1@1150|Oscillatoriales 1117|Cyanobacteria GM Glycosyl hydrolase family 1 - - 1.1.1.133 ko:K00067 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R02777 RC00182 ko00000,ko00001,ko00002,ko01000 - - - Glyco_hydro_1,RmlD_sub_bind DYD2_k127_4674604_1 272134.KB731324_gene972 8.481e-202 635.0 COG0562@1|root,COG0562@2|Bacteria,1G3KR@1117|Cyanobacteria,1HA1P@1150|Oscillatoriales 1117|Cyanobacteria M PFAM UDP-galactopyranose mutase, C-terminal - - 5.4.99.9 ko:K01854 ko00052,ko00520,map00052,map00520 - R00505,R09009 RC00317,RC02396 ko00000,ko00001,ko01000 - - - GLF,Glyco_trans_1_4,NAD_binding_8 DYD2_k127_4674604_2 1173028.ANKO01000112_gene4884 1.626e-154 497.0 COG0438@1|root,COG0562@1|root,COG0438@2|Bacteria,COG0562@2|Bacteria,1G3KR@1117|Cyanobacteria,1HA1P@1150|Oscillatoriales 1117|Cyanobacteria M PFAM UDP-galactopyranose mutase, C-terminal - - 5.4.99.9 ko:K01854 ko00052,ko00520,map00052,map00520 - R00505,R09009 RC00317,RC02396 ko00000,ko00001,ko01000 - - - GLF,Glyco_trans_1_4,NAD_binding_8 DYD2_k127_4677613_6 439235.Dalk_1937 4.008e-28 123.0 COG1040@1|root,COG1040@2|Bacteria,1RHAV@1224|Proteobacteria,42SV9@68525|delta/epsilon subdivisions,2WPXX@28221|Deltaproteobacteria,2MJUD@213118|Desulfobacterales 28221|Deltaproteobacteria S PFAM Phosphoribosyltransferase - - - - - - - - - - - - Pribosyltran DYD2_k127_4677613_7 204669.Acid345_4135 2.807e-23 103.0 COG1734@1|root,COG1734@2|Bacteria,3Y5PJ@57723|Acidobacteria,2JK2N@204432|Acidobacteriia 204432|Acidobacteriia T Prokaryotic dksA/traR C4-type zinc finger - - - ko:K06204 ko02026,map02026 - - - ko00000,ko00001,ko03000,ko03009,ko03021 - - - zf-dskA_traR DYD2_k127_4677613_5 316067.Geob_0611 2.736e-29 122.0 COG1576@1|root,COG1576@2|Bacteria,1N7WB@1224|Proteobacteria,42V41@68525|delta/epsilon subdivisions,2X6IT@28221|Deltaproteobacteria,43UX0@69541|Desulfuromonadales 28221|Deltaproteobacteria J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA rlmH - 2.1.1.177 ko:K00783 - - - - ko00000,ko01000,ko03009 - - - SPOUT_MTase DYD2_k127_4677613_1 204669.Acid345_0023 5.873e-85 291.0 COG2204@1|root,COG2204@2|Bacteria,3Y38J@57723|Acidobacteria,2JICQ@204432|Acidobacteriia 57723|Acidobacteria T PFAM Response regulator receiver domain - - - - - - - - - - - - HTH_8,Sigma54_activat DYD2_k127_4677613_4 1340493.JNIF01000003_gene2554 1.195e-32 132.0 COG0799@1|root,COG0799@2|Bacteria,3Y5SD@57723|Acidobacteria 57723|Acidobacteria S Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation rsfS - - ko:K09710 - - - - ko00000,ko03009 - - - RsfS DYD2_k127_4677613_2 525268.HMPREF0308_0755 9.714e-39 153.0 COG1057@1|root,COG1057@2|Bacteria,2GMFZ@201174|Actinobacteria,22KCY@1653|Corynebacteriaceae 201174|Actinobacteria H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) nadD GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 ko:K00969 ko00760,ko01100,map00760,map01100 M00115 R00137,R03005 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_like DYD2_k127_4677613_0 234267.Acid_3160 4.202e-127 415.0 COG0536@1|root,COG0536@2|Bacteria,3Y2J7@57723|Acidobacteria 57723|Acidobacteria S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control obg - - ko:K03979 - - - - ko00000,ko01000,ko03009 - - - GTP1_OBG,MMR_HSR1 DYD2_k127_4677613_3 240015.ACP_2746 2.572e-35 136.0 COG0211@1|root,COG0211@2|Bacteria,3Y5D8@57723|Acidobacteria,2JJPG@204432|Acidobacteriia 204432|Acidobacteriia J Belongs to the bacterial ribosomal protein bL27 family rpmA - - ko:K02899 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27 DYD2_k127_4679223_2 234267.Acid_1209 1.536e-41 158.0 COG1595@1|root,COG1595@2|Bacteria,3Y589@57723|Acidobacteria 57723|Acidobacteria K ECF sigma factor - - - - - - - - - - - - Sigma70_ECF DYD2_k127_4679223_4 118161.KB235922_gene5337 1.051e-24 112.0 COG2931@1|root,COG3391@1|root,COG2931@2|Bacteria,COG3391@2|Bacteria,1GC8T@1117|Cyanobacteria 1117|Cyanobacteria Q Lactonase, 7-bladed beta-propeller - - - - - - - - - - - - HemolysinCabind,Lactonase DYD2_k127_4679223_0 313624.NSP_46940 5.171e-68 239.0 COG0671@1|root,COG0671@2|Bacteria,1G24P@1117|Cyanobacteria,1HK6H@1161|Nostocales 1117|Cyanobacteria I phosphoesterase, PA-phosphatase related - - - - - - - - - - - - - DYD2_k127_4679223_3 1144275.COCOR_07194 2.582e-38 147.0 COG0640@1|root,COG0640@2|Bacteria,1N4FB@1224|Proteobacteria 1224|Proteobacteria K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20 DYD2_k127_4679223_1 1278073.MYSTI_07011 3.803e-55 199.0 COG3832@1|root,COG3832@2|Bacteria,1RHJJ@1224|Proteobacteria 1224|Proteobacteria S Activator of Hsp90 ATPase - - - - - - - - - - - - AHSA1 DYD2_k127_4679223_6 370438.PTH_0118 1.413e-23 113.0 COG0760@1|root,COG0760@2|Bacteria,1TX3R@1239|Firmicutes,24C7H@186801|Clostridia,266W1@186807|Peptococcaceae 186801|Clostridia M PFAM PpiC-type peptidyl-prolyl cis-trans isomerase prsA - 5.2.1.8 ko:K03769,ko:K07533 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_2,Rotamase_3,SurA_N_3 DYD2_k127_4679223_5 1122998.AUHZ01000004_gene1111 2.426e-24 118.0 COG1404@1|root,COG1404@2|Bacteria,2GK3D@201174|Actinobacteria,4DSSQ@85009|Propionibacteriales 201174|Actinobacteria O PA domain - - - - - - - - - - - - Big_3_5,Inhibitor_I9,PA,Peptidase_S8,SLH,fn3_5 DYD2_k127_4679615_2 1001585.MDS_1721 1.233e-25 117.0 COG4977@1|root,COG4977@2|Bacteria,1MXZQ@1224|Proteobacteria,1RQM6@1236|Gammaproteobacteria,1YJPA@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria K AraC family transcriptional regulator - - - ko:K07506 - - - - ko00000,ko03000 - - - AraC_binding,HTH_18,HTH_AraC DYD2_k127_4679615_0 459349.CLOAM0423 2.912e-213 669.0 COG1260@1|root,COG1260@2|Bacteria,2NP2I@2323|unclassified Bacteria 2|Bacteria I Myo-inositol-1-phosphate synthase ino1 - 5.5.1.4 ko:K01858 ko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130 - R07324 RC01804 ko00000,ko00001,ko01000 - - - Inos-1-P_synth,NAD_binding_5 DYD2_k127_4679615_1 204669.Acid345_0710 2.336e-80 273.0 COG0542@1|root,COG0542@2|Bacteria,3Y463@57723|Acidobacteria,2JMAK@204432|Acidobacteriia 204432|Acidobacteriia O C-terminal, D2-small domain, of ClpB protein - - - - - - - - - - - - AAA_2,ClpB_D2-small DYD2_k127_4684236_1 234267.Acid_6430 6.819e-60 211.0 COG0138@1|root,COG0138@2|Bacteria,3Y2QI@57723|Acidobacteria 57723|Acidobacteria F Bifunctional purine biosynthesis protein PurH purH - 2.1.2.3,3.5.4.10 ko:K00602 ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523 M00048 R01127,R04560 RC00026,RC00263,RC00456 ko00000,ko00001,ko00002,ko01000,ko04147 - - - AICARFT_IMPCHas,MGS DYD2_k127_4684236_2 1499967.BAYZ01000147_gene731 2.347e-58 214.0 COG0501@1|root,COG0501@2|Bacteria 2|Bacteria O metalloendopeptidase activity - - - - - - - - - - - - Peptidase_M48 DYD2_k127_4684236_3 1499967.BAYZ01000139_gene160 1.074e-09 62.0 COG4636@1|root,COG4636@2|Bacteria 2|Bacteria D protein conserved in cyanobacteria - - - - - - - - - - - - Uma2 DYD2_k127_4684236_4 631362.Thi970DRAFT_00575 6.107e-06 49.0 COG4636@1|root,COG4636@2|Bacteria,1RH5Y@1224|Proteobacteria,1S823@1236|Gammaproteobacteria,1WYPU@135613|Chromatiales 135613|Chromatiales S Putative restriction endonuclease - - - - - - - - - - - - Uma2 DYD2_k127_4684236_0 1382359.JIAL01000001_gene1578 1.585e-92 310.0 COG0623@1|root,COG0623@2|Bacteria,3Y3EN@57723|Acidobacteria,2JHZZ@204432|Acidobacteriia 204432|Acidobacteriia I Enoyl- acyl-carrier-protein reductase NADH - - 1.3.1.10,1.3.1.9 ko:K00208 ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212 M00083,M00572 R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671 RC00052,RC00076,RC00120 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD2_k127_4690728_4 325452.fgenesh_scip_prom.46568.7737 2.427e-13 71.0 COG0377@1|root,KOG1687@2759|Eukaryota 2759|Eukaryota C quinone binding NUO10 GO:0000302,GO:0002118,GO:0002121,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0007610,GO:0008150,GO:0008152,GO:0008270,GO:0008340,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0010259,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048856,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051704,GO:0051705,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099174,GO:1901135,GO:1901360,GO:1901564,GO:1901700,GO:1902494,GO:1990204,GO:2000331 1.6.5.3,1.6.99.3,3.6.4.13 ko:K03940,ko:K16911 ko00190,ko01100,ko01110,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map01110,map04714,map04723,map04932,map05010,map05012,map05016 M00143 R11945 RC00061 ko00000,ko00001,ko00002,ko01000,ko03009,ko03036 3.D.1.6 - - Oxidored_q6 DYD2_k127_4690728_1 247490.KSU1_D0329 2.22e-34 137.0 COG0838@1|root,COG0838@2|Bacteria,2J09T@203682|Planctomycetes 203682|Planctomycetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoA - 1.6.5.3 ko:K00330 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q4 DYD2_k127_4690728_3 1121920.AUAU01000025_gene2317 8.221e-14 81.0 2ET40@1|root,33KN7@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_4690728_2 204669.Acid345_1317 5.456e-14 74.0 COG2104@1|root,COG2104@2|Bacteria,3Y5XU@57723|Acidobacteria,2JK4P@204432|Acidobacteriia 204432|Acidobacteriia H thiamine biosynthesis protein ThiS - - - ko:K03154 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS DYD2_k127_4690728_0 234267.Acid_7731 5.012e-103 341.0 COG2022@1|root,COG2022@2|Bacteria 2|Bacteria H thiamine diphosphate biosynthetic process thiG GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 ko:K03149 ko00730,ko01100,map00730,map01100 - R10247 RC03096,RC03097,RC03461 ko00000,ko00001,ko01000 - - - ThiG,ThiS DYD2_k127_4690728_5 1177594.MIC448_340050 2.969e-08 55.0 COG3511@1|root,COG3511@2|Bacteria,2GKPN@201174|Actinobacteria,4FM35@85023|Microbacteriaceae 201174|Actinobacteria M Phosphoesterase family - - 3.1.4.3 ko:K01114 ko00562,ko00564,ko00565,ko01100,ko01110,ko02024,ko04919,map00562,map00564,map00565,map01100,map01110,map02024,map04919 - R01312,R02027,R02052,R03332,R07381 RC00017,RC00425 ko00000,ko00001,ko01000,ko02042 - - - Phosphoesterase DYD2_k127_4697899_0 1267533.KB906742_gene676 3.525e-108 381.0 COG0457@1|root,COG3710@1|root,COG3899@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG3899@2|Bacteria,3Y2KZ@57723|Acidobacteria,2JM2J@204432|Acidobacteriia 204432|Acidobacteriia K AAA ATPase domain - - - - - - - - - - - - AAA_16,Trans_reg_C DYD2_k127_4697899_1 1380394.JADL01000002_gene1595 2.12e-27 119.0 COG2114@1|root,COG3899@1|root,COG2114@2|Bacteria,COG3899@2|Bacteria,1MUDT@1224|Proteobacteria,2TQVN@28211|Alphaproteobacteria,2JQNY@204441|Rhodospirillales 204441|Rhodospirillales T AAA ATPase domain - - - - - - - - - - - - AAA_16,Guanylate_cyc,SAM_1 DYD2_k127_4722854_0 1210884.HG799469_gene14163 3.522e-60 213.0 COG0666@1|root,COG1520@1|root,COG0666@2|Bacteria,COG1520@2|Bacteria,2J2A4@203682|Planctomycetes 203682|Planctomycetes S beta-propeller repeat - - - - - - - - - - - - PQQ_2,PQQ_3 DYD2_k127_4722854_1 337075.U4LUU8 3.128e-11 74.0 COG0666@1|root,KOG0504@2759|Eukaryota,39YNX@33154|Opisthokonta,3PHTC@4751|Fungi,3R54F@4890|Ascomycota 4751|Fungi S Ankyrin repeat protein - - - - - - - - - - - - Ank_2,Ank_3,Ank_4,Helo_like_N,NACHT DYD2_k127_4730513_1 1382359.JIAL01000001_gene1322 4.915e-154 494.0 COG1225@1|root,COG1225@2|Bacteria 2|Bacteria O peroxiredoxin activity - - - - - - - - - - - - DUF4369,Redoxin,Thioredoxin_8,UnbV_ASPIC,VCBS DYD2_k127_4730513_0 1382359.JIAL01000001_gene1323 0.0 1439.0 COG0457@1|root,COG0457@2|Bacteria,3Y2IK@57723|Acidobacteria 57723|Acidobacteria S Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_4742799_1 309801.trd_A0816 1.806e-80 283.0 COG1086@1|root,COG2148@1|root,COG1086@2|Bacteria,COG2148@2|Bacteria,2G66B@200795|Chloroflexi,27XNK@189775|Thermomicrobia 189775|Thermomicrobia M PFAM sugar transferase - - - - - - - - - - - - Bac_transf,CoA_binding_3 DYD2_k127_4742799_2 640513.Entas_0500 4.681e-37 151.0 2EPPM@1|root,33HA6@2|Bacteria,1PTEG@1224|Proteobacteria,1STWZ@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_4742799_4 1408422.JHYF01000008_gene3793 2.586e-16 93.0 COG2333@1|root,COG2333@2|Bacteria,1TS9U@1239|Firmicutes,249VR@186801|Clostridia,36DFY@31979|Clostridiaceae 186801|Clostridia L domain protein - - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Ada_Zn_binding,Lactamase_B DYD2_k127_4742799_3 1121930.AQXG01000014_gene350 1.313e-22 114.0 COG1404@1|root,COG2356@1|root,COG3291@1|root,COG1404@2|Bacteria,COG2356@2|Bacteria,COG3291@2|Bacteria,4PI1X@976|Bacteroidetes,1IXYZ@117747|Sphingobacteriia 976|Bacteroidetes L Endonuclease I - - - - - - - - - - - - Endonuclease_1 DYD2_k127_4742799_0 1144275.COCOR_07092 2.717e-95 323.0 COG4447@1|root,COG4447@2|Bacteria,1RI56@1224|Proteobacteria 1224|Proteobacteria S cellulose binding - - - - - - - - - - - - - DYD2_k127_4742799_5 1349767.GJA_4137 2.002e-10 62.0 COG3511@1|root,COG3511@2|Bacteria,1MWVP@1224|Proteobacteria,2W030@28216|Betaproteobacteria,477F2@75682|Oxalobacteraceae 28216|Betaproteobacteria M Phosphoesterase family - - 3.1.4.3 ko:K01114 ko00562,ko00564,ko00565,ko01100,ko01110,ko02024,ko04919,map00562,map00564,map00565,map01100,map01110,map02024,map04919 - R01312,R02027,R02052,R03332,R07381 RC00017,RC00425 ko00000,ko00001,ko01000,ko02042 - - - Phosphoesterase DYD2_k127_4745288_2 71139.XP_010038521.1 1.365e-38 162.0 COG3934@1|root,2QS4Q@2759|Eukaryota,37PFM@33090|Viridiplantae,3GCR2@35493|Streptophyta 35493|Streptophyta G Belongs to the glycosyl hydrolase 5 (cellulase A) family - GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0004567,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010412,GO:0015923,GO:0016052,GO:0016787,GO:0016798,GO:0016985,GO:0016998,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0046355,GO:0071554,GO:0071704,GO:1901575 3.2.1.78 ko:K19355 ko00051,map00051 - R01332 RC00467 ko00000,ko00001,ko01000 - - - Cellulase DYD2_k127_4745288_5 497965.Cyan7822_1093 0.0008282 42.0 COG2442@1|root,COG2442@2|Bacteria,1GA44@1117|Cyanobacteria,3KKC0@43988|Cyanothece 1117|Cyanobacteria S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_4745288_3 1380355.JNIJ01000023_gene2394 0.0001415 55.0 COG4346@1|root,COG4346@2|Bacteria,1QHX0@1224|Proteobacteria,2TVG5@28211|Alphaproteobacteria,3JT74@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria O C-terminal four TMM region of protein-O-mannosyltransferase - - 2.4.1.109 ko:K00728 ko00514,ko00515,ko01100,map00514,map00515,map01100 - R04072,R07620,R11399 RC00005,RC00059,RC00397 ko00000,ko00001,ko01000,ko01003 - GT39 - PMT,PMT_2,PMT_4TMC DYD2_k127_4745288_4 997296.PB1_05877 0.0004013 49.0 2EH82@1|root,33AZX@2|Bacteria,1VN99@1239|Firmicutes,4I3CU@91061|Bacilli,1ZG0Z@1386|Bacillus 91061|Bacilli S Protein of unknown function with HXXEE motif - - - - - - - - - - - - HXXEE DYD2_k127_4745288_0 204669.Acid345_1474 7.999e-160 517.0 COG1113@1|root,COG1113@2|Bacteria 2|Bacteria E amino acid transport - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 DYD2_k127_4745288_1 204669.Acid345_1475 5.384e-118 391.0 COG0436@1|root,COG0436@2|Bacteria,3Y5AV@57723|Acidobacteria,2JJXH@204432|Acidobacteriia 204432|Acidobacteriia E Cys/Met metabolism PLP-dependent enzyme - - - - - - - - - - - - Aminotran_1_2 DYD2_k127_4745398_5 313624.NSP_41550 2.206e-22 97.0 COG2442@1|root,COG2442@2|Bacteria,1G83Q@1117|Cyanobacteria,1HPQ8@1161|Nostocales 1117|Cyanobacteria S InterPro IPR007367 - - - - - - - - - - - - - DYD2_k127_4745398_6 478741.JAFS01000001_gene1338 1.066e-07 53.0 COG3501@1|root,COG3501@2|Bacteria 2|Bacteria T Rhs element vgr protein tssI GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007015,GO:0008144,GO:0008150,GO:0008152,GO:0008154,GO:0009405,GO:0009987,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0018149,GO:0018153,GO:0018193,GO:0018199,GO:0018205,GO:0018262,GO:0018995,GO:0019538,GO:0022411,GO:0030029,GO:0030036,GO:0030042,GO:0030430,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0033643,GO:0033646,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0043624,GO:0043656,GO:0043657,GO:0043933,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044419,GO:0046872,GO:0051261,GO:0051704,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0097435,GO:1901265,GO:1901363,GO:1901564 - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - Gp5_C,Phage_GPD,VRR_NUC DYD2_k127_4745398_0 204669.Acid345_1918 0.0 1206.0 COG3808@1|root,COG3808@2|Bacteria,3Y34E@57723|Acidobacteria,2JJHT@204432|Acidobacteriia 204432|Acidobacteriia C Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force hppA - 3.6.1.1 ko:K15987 ko00190,map00190 - - - ko00000,ko00001,ko01000 3.A.10.1 - - H_PPase DYD2_k127_4745398_1 1382356.JQMP01000001_gene1206 1.011e-45 172.0 COG1268@1|root,COG1268@2|Bacteria,2GBUZ@200795|Chloroflexi,27YWE@189775|Thermomicrobia 189775|Thermomicrobia S BioY family - - - ko:K03523 ko02010,map02010 M00581,M00582 - - ko00000,ko00001,ko00002,ko02000 2.A.88.1,2.A.88.2 - - BioY DYD2_k127_4745398_2 771875.Ferpe_0008 1.26e-38 147.0 COG0432@1|root,COG0432@2|Bacteria,2GD2P@200918|Thermotogae 200918|Thermotogae S PFAM Uncharacterised protein family UPF0047 - - - - - - - - - - - - UPF0047 DYD2_k127_4745398_3 1121936.AUHI01000001_gene858 8.07e-30 128.0 COG0500@1|root,COG2226@2|Bacteria,1UW6A@1239|Firmicutes,4HHM5@91061|Bacilli 91061|Bacilli Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11,Methyltransf_23 DYD2_k127_4745398_4 266117.Rxyl_3184 4.581e-29 127.0 COG0404@1|root,COG0404@2|Bacteria,2GJ47@201174|Actinobacteria,4CP79@84995|Rubrobacteria 84995|Rubrobacteria E The glycine cleavage system catalyzes the degradation of glycine gcvT - 2.1.2.10 ko:K00605 ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200 M00532 R01221,R02300,R04125 RC00022,RC00069,RC00183,RC02834 ko00000,ko00001,ko00002,ko01000 - - - GCV_T,GCV_T_C DYD2_k127_4747415_1 1267533.KB906734_gene4421 1.498e-95 326.0 COG0592@1|root,COG0592@2|Bacteria,3Y2WE@57723|Acidobacteria,2JI4X@204432|Acidobacteriia 204432|Acidobacteriia L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria - - 2.7.7.7 ko:K02338 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3 DYD2_k127_4747415_0 1444310.JANV01000028_gene1575 1.489e-136 449.0 COG0593@1|root,COG0593@2|Bacteria,1TPV7@1239|Firmicutes,4H9MW@91061|Bacilli,1ZBKI@1386|Bacillus 91061|Bacilli L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids dnaA GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - ko:K02313 ko02020,ko04112,map02020,map04112 - - - ko00000,ko00001,ko03032,ko03036 - - - Bac_DnaA,Bac_DnaA_C,DnaA_N DYD2_k127_4747415_3 870187.Thini_1636 7.52e-06 52.0 2DT6J@1|root,33IXD@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_4747415_2 1027273.GZ77_23845 3.302e-06 53.0 COG3464@1|root,COG3464@2|Bacteria,1R8B7@1224|Proteobacteria,1SHHY@1236|Gammaproteobacteria 1236|Gammaproteobacteria L Transposase - - - - - - - - - - - - UPF0236 DYD2_k127_476559_2 1463825.JNXC01000005_gene2348 5.047e-05 47.0 2AQV1@1|root,31G37@2|Bacteria,2IEU1@201174|Actinobacteria 201174|Actinobacteria - - - - - - - - - - - - - - Peptidase_S8 DYD2_k127_476559_3 926569.ANT_17670 0.0001846 44.0 COG0606@1|root,COG0606@2|Bacteria,2G65P@200795|Chloroflexi 200795|Chloroflexi O PFAM magnesium chelatase ChlI subunit - - - ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C DYD2_k127_476559_1 1380370.JIBA01000012_gene3603 3.236e-07 58.0 2FKII@1|root,34C5N@2|Bacteria,2HY08@201174|Actinobacteria,4FJ1D@85021|Intrasporangiaceae 201174|Actinobacteria S Polyketide cyclase / dehydrase and lipid transport - - - - - - - - - - - - Polyketide_cyc2 DYD2_k127_4767562_0 3218.PP1S46_300V6.1 7.588e-99 336.0 COG0667@1|root,2S0PI@2759|Eukaryota,37UGN@33090|Viridiplantae,3GP0T@35493|Streptophyta 35493|Streptophyta C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD2_k127_4767562_1 1122134.KB893650_gene647 3.657e-31 128.0 COG4323@1|root,COG4323@2|Bacteria,1N16T@1224|Proteobacteria,1S8V6@1236|Gammaproteobacteria,1XMAY@135619|Oceanospirillales 135619|Oceanospirillales S membrane - - - - - - - - - - - - DUF962 DYD2_k127_4767562_2 1122169.AREN01000061_gene2762 2.013e-24 107.0 arCOG08992@1|root,333S7@2|Bacteria,1N6VK@1224|Proteobacteria,1SDZ8@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Abi-like protein - - - - - - - - - - - - Abi_2 DYD2_k127_4767562_3 1517682.HW49_09230 4.075e-06 57.0 COG0417@1|root,COG0417@2|Bacteria,4PKQ5@976|Bacteroidetes,2G0YB@200643|Bacteroidia,22Z4G@171551|Porphyromonadaceae 976|Bacteroidetes L Predicted 3'-5' exonuclease related to the exonuclease domain of PolB - - - ko:K07501 - - - - ko00000 - - - DNA_pol_B_exo2 DYD2_k127_4767564_1 234267.Acid_2017 2.879e-123 398.0 COG1506@1|root,COG1506@2|Bacteria,3Y2HK@57723|Acidobacteria 57723|Acidobacteria E Dienelactone hydrolase family - - - - - - - - - - - - Peptidase_S9 DYD2_k127_4767564_2 661478.OP10G_2176 1.331e-102 351.0 COG0793@1|root,COG0793@2|Bacteria 2|Bacteria M Belongs to the peptidase S41A family - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S41,Peptidase_S41_N DYD2_k127_4767564_0 443143.GM18_0728 5.422e-301 930.0 COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,42MMK@68525|delta/epsilon subdivisions,2WJC1@28221|Deltaproteobacteria 28221|Deltaproteobacteria S PFAM ABC transporter related yjjK - 3.6.3.25 ko:K06020 - - - - ko00000,ko01000 - - - ABC_tran,ABC_tran_Xtn DYD2_k127_4772614_0 287.DR97_467 1.147e-124 418.0 COG0265@1|root,COG1864@1|root,COG0265@2|Bacteria,COG1864@2|Bacteria,1QSGF@1224|Proteobacteria,1SQDD@1236|Gammaproteobacteria 1236|Gammaproteobacteria F DNA/RNA non-specific endonuclease - - - ko:K01173 ko04210,map04210 - - - ko00000,ko00001,ko03029 - - - Endonuclease_NS DYD2_k127_4772614_1 1121105.ATXL01000013_gene1920 2.2e-94 318.0 COG0305@1|root,COG0305@2|Bacteria,1TPCT@1239|Firmicutes,4H9Y8@91061|Bacilli,4B08S@81852|Enterococcaceae 91061|Bacilli L Participates in initiation and elongation during chromosome replication dnaB GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 ko:K02314 ko03030,ko04112,map03030,map04112 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB,DnaB_C DYD2_k127_4776793_0 518766.Rmar_0925 2.076e-71 256.0 COG1472@1|root,COG1680@1|root,COG1472@2|Bacteria,COG1680@2|Bacteria,4NET8@976|Bacteroidetes,1FJ9E@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes G Glycosyl hydrolase family 3 N terminal domain - - 3.2.1.52 ko:K01207 ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501 M00628 R00022,R05963,R07809,R07810,R10831 RC00049 ko00000,ko00001,ko00002,ko01000 - - - Beta-lactamase,Glyco_hydro_3,Glyco_hydro_3_C DYD2_k127_4776793_1 1382359.JIAL01000001_gene2998 3.15e-11 68.0 COG1680@1|root,COG3876@1|root,COG1680@2|Bacteria,COG3876@2|Bacteria,3Y2UC@57723|Acidobacteria,2JIDD@204432|Acidobacteriia 204432|Acidobacteriia V Protein of unknown function (DUF1343) - - - - - - - - - - - - Beta-lactamase,DUF1343,SSF DYD2_k127_478133_2 1340493.JNIF01000003_gene1504 3.16e-64 225.0 COG1131@1|root,COG1131@2|Bacteria,3Y4YH@57723|Acidobacteria 57723|Acidobacteria V ABC transporter - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_478133_3 1121272.KB903289_gene4343 2.344e-06 59.0 COG1277@1|root,COG1277@2|Bacteria,2GKKP@201174|Actinobacteria,4D8U0@85008|Micromonosporales 201174|Actinobacteria S ABC-type transport system involved in multi-copper enzyme maturation permease component - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2 DYD2_k127_478133_1 234267.Acid_7689 5.024e-135 440.0 COG1131@1|root,COG1131@2|Bacteria,3Y6U6@57723|Acidobacteria 57723|Acidobacteria V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_478133_0 234267.Acid_7690 3.052e-140 479.0 COG3712@1|root,COG3712@2|Bacteria,3Y772@57723|Acidobacteria 57723|Acidobacteria PT FecR protein - - - - - - - - - - - - FecR DYD2_k127_4791883_0 909663.KI867149_gene3370 1.179e-159 524.0 COG1075@1|root,COG1075@2|Bacteria,1NYAK@1224|Proteobacteria,42Q3C@68525|delta/epsilon subdivisions,2WMAK@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_6 DYD2_k127_4791883_1 1380394.JADL01000008_gene3484 5.152e-92 317.0 COG2114@1|root,COG2114@2|Bacteria,1MY09@1224|Proteobacteria,2U2KA@28211|Alphaproteobacteria,2JX68@204441|Rhodospirillales 204441|Rhodospirillales T Adenylyl- / guanylyl cyclase, catalytic domain - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_cyc DYD2_k127_4808123_0 1267533.KB906733_gene3250 4.514e-216 687.0 COG0457@1|root,COG0457@2|Bacteria,3Y3VT@57723|Acidobacteria,2JHXZ@204432|Acidobacteriia 204432|Acidobacteriia S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_4808123_1 1267533.KB906733_gene3484 1.45e-180 585.0 COG0457@1|root,COG0457@2|Bacteria,3Y3WM@57723|Acidobacteria,2JI36@204432|Acidobacteriia 204432|Acidobacteriia S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_4808123_2 1174528.JH992893_gene5977 1.914e-07 53.0 COG0364@1|root,COG0364@2|Bacteria,1G0K9@1117|Cyanobacteria,1JGUF@1189|Stigonemataceae 1117|Cyanobacteria G Glucose-6-phosphate dehydrogenase, NAD binding domain zwf - 1.1.1.363,1.1.1.49 ko:K00036 ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230 M00004,M00006,M00008 R00835,R02736,R10907 RC00001,RC00066 ko00000,ko00001,ko00002,ko01000,ko04147 - - - G6PD_C,G6PD_N DYD2_k127_4810214_1 1163617.SCD_n00171 3.021e-64 222.0 COG1715@1|root,COG1715@2|Bacteria,1Q2VY@1224|Proteobacteria,2VPK0@28216|Betaproteobacteria 28216|Betaproteobacteria L restriction endonuclease - - - ko:K07448 - - - - ko00000,ko02048 - - - Mrr_N,Mrr_cat DYD2_k127_4810214_2 13035.Dacsa_0788 1.189e-21 102.0 COG1715@1|root,COG1715@2|Bacteria,1G3FW@1117|Cyanobacteria 1117|Cyanobacteria L restriction endonuclease mrr - - ko:K07448 - - - - ko00000,ko02048 - - - Mrr_N,Mrr_cat DYD2_k127_4810214_0 646529.Desaci_2502 3.898e-103 340.0 COG0412@1|root,COG0412@2|Bacteria,1UZRU@1239|Firmicutes 1239|Firmicutes Q Dienelactone hydrolase family - - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH DYD2_k127_4815979_1 525897.Dbac_0953 7.059e-86 291.0 COG4325@1|root,COG4325@2|Bacteria,1MXTM@1224|Proteobacteria,42NU4@68525|delta/epsilon subdivisions,2WKV0@28221|Deltaproteobacteria,2MEA9@213115|Desulfovibrionales 28221|Deltaproteobacteria S Predicted membrane protein (DUF2254) - - - - - - - - - - - - DUF2254 DYD2_k127_4815979_0 410359.Pcal_1363 2.429e-159 523.0 COG0380@1|root,arCOG02831@2157|Archaea,2XRNT@28889|Crenarchaeota 28889|Crenarchaeota G Haloacid dehalogenase domain protein hydrolase, type 3 - - 2.4.1.15,3.1.3.12 ko:K16055 ko00500,ko01100,map00500,map01100 - R02737,R02778 RC00005,RC00017,RC00049,RC02748 ko00000,ko00001,ko01000,ko01003 - GT20 - Glyco_transf_20,Trehalose_PPase DYD2_k127_481725_0 1340493.JNIF01000003_gene3701 1.973e-153 499.0 COG0541@1|root,COG0541@2|Bacteria,3Y3AU@57723|Acidobacteria 57723|Acidobacteria U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY ffh - 3.6.5.4 ko:K03106 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko01000,ko02044 3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9 - - SRP54,SRP54_N,SRP_SPB DYD2_k127_481725_3 289376.THEYE_A0818 3.836e-20 97.0 COG0228@1|root,COG0228@2|Bacteria,3J0UI@40117|Nitrospirae 40117|Nitrospirae J Belongs to the bacterial ribosomal protein bS16 family rpsP GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02959 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S16 DYD2_k127_481725_4 717231.Flexsi_1964 4.033e-18 86.0 COG1837@1|root,COG1837@2|Bacteria,2GFZI@200930|Deferribacteres 200930|Deferribacteres S KH domain - - - ko:K06960 - - - - ko00000 - - - KH_4 DYD2_k127_481725_2 204669.Acid345_2874 1.735e-25 113.0 COG0806@1|root,COG0806@2|Bacteria,3Y51G@57723|Acidobacteria,2JJGA@204432|Acidobacteriia 204432|Acidobacteriia J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes rimM - - ko:K02860 - - - - ko00000,ko03009 - - - PRC,RimM DYD2_k127_481725_1 1267534.KB906756_gene396 5.895e-58 205.0 COG0336@1|root,COG0336@2|Bacteria,3Y3CS@57723|Acidobacteria,2JHUJ@204432|Acidobacteriia 204432|Acidobacteriia J Belongs to the RNA methyltransferase TrmD family trmD - 2.1.1.228 ko:K00554 - - R00597 RC00003,RC00334 ko00000,ko01000,ko03016 - - - tRNA_m1G_MT DYD2_k127_4817526_0 1047013.AQSP01000079_gene2039 1.781e-143 465.0 2C57D@1|root,2Z7RS@2|Bacteria 2|Bacteria S Protein of unknown function (DUF2891) - - - - - - - - - - - - DUF2891 DYD2_k127_4825352_2 1379270.AUXF01000003_gene3607 5.368e-11 70.0 COG1524@1|root,COG1524@2|Bacteria,1ZUAG@142182|Gemmatimonadetes 142182|Gemmatimonadetes S type I phosphodiesterase nucleotide pyrophosphatase - - - - - - - - - - - - - DYD2_k127_4825352_0 204669.Acid345_3570 2.563e-94 319.0 COG1131@1|root,COG1131@2|Bacteria,3Y394@57723|Acidobacteria,2JINE@204432|Acidobacteriia 204432|Acidobacteriia V pfam abc - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_4825352_1 1487953.JMKF01000035_gene1206 9.71e-25 108.0 COG1672@1|root,COG1672@2|Bacteria,1G3JV@1117|Cyanobacteria,1HHT5@1150|Oscillatoriales 1117|Cyanobacteria KLT AAA-like domain - - - - - - - - - - - - AAA_35,CHASE2 DYD2_k127_4829293_1 1166018.FAES_5424 3.056e-30 126.0 COG3653@1|root,COG3653@2|Bacteria,4NHDD@976|Bacteroidetes,47KC3@768503|Cytophagia 976|Bacteroidetes Q PFAM D-aminoacylase, C-terminal region - - 3.5.1.81 ko:K06015 - - R02192 RC00064,RC00328 ko00000,ko01000 - - - Amidohydro_3 DYD2_k127_4829293_0 234267.Acid_3358 3.876e-186 608.0 COG1629@1|root,COG1629@2|Bacteria 2|Bacteria P transport - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_4829526_1 330214.NIDE2466 2.002e-45 168.0 COG0757@1|root,COG0757@2|Bacteria,3J199@40117|Nitrospirae 40117|Nitrospirae E Catalyzes a trans-dehydration via an enolate intermediate aroQ - 4.2.1.10 ko:K03786 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - - DHquinase_II DYD2_k127_4829526_2 382464.ABSI01000011_gene2581 4.362e-38 147.0 COG0511@1|root,COG0511@2|Bacteria,46SXA@74201|Verrucomicrobia,2IUDK@203494|Verrucomicrobiae 203494|Verrucomicrobiae I Biotin-requiring enzyme - - - - - - - - - - - - Biotin_lipoyl DYD2_k127_4829526_0 497964.CfE428DRAFT_2953 2.136e-73 252.0 COG0439@1|root,COG0439@2|Bacteria,46SIE@74201|Verrucomicrobia 74201|Verrucomicrobia I acetyl-CoA carboxylase - - 6.3.4.14,6.4.1.2 ko:K01961 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04385 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,CPSase_L_D2 DYD2_k127_483492_0 926550.CLDAP_00120 2.333e-146 477.0 COG0124@1|root,COG0124@2|Bacteria,2G64E@200795|Chloroflexi 200795|Chloroflexi J PFAM tRNA synthetase class II (G H P and S) hisS - 6.1.1.21 ko:K01892 ko00970,map00970 M00359,M00360 R03655 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_His DYD2_k127_483492_3 1382315.JPOI01000001_gene31 7.357e-68 246.0 COG0436@1|root,COG0436@2|Bacteria,1TP0J@1239|Firmicutes,4HA13@91061|Bacilli,1WFUF@129337|Geobacillus 91061|Bacilli E DegT/DnrJ/EryC1/StrS aminotransferase family patA - - ko:K00841 ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230 M00525 R04467 RC00006 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 DYD2_k127_483492_1 204669.Acid345_2087 1.923e-107 354.0 COG2171@1|root,COG2171@2|Bacteria,3Y2Z3@57723|Acidobacteria,2JIDV@204432|Acidobacteriia 204432|Acidobacteriia E Belongs to the transferase hexapeptide repeat family - - 2.3.1.117 ko:K00674 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R04365 RC00004,RC01136 ko00000,ko00001,ko00002,ko01000 - - - Hexapep_2,THDPS_N_2 DYD2_k127_483492_2 204669.Acid345_2493 1.74e-95 322.0 COG0329@1|root,COG0329@2|Bacteria,3Y3V8@57723|Acidobacteria,2JICI@204432|Acidobacteriia 204432|Acidobacteriia E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) dapA - 4.3.3.7 ko:K01714 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R10147 RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD2_k127_483492_4 234267.Acid_6981 5.045e-61 218.0 COG0289@1|root,COG0289@2|Bacteria,3Y50R@57723|Acidobacteria 57723|Acidobacteria E Belongs to the DapB family dapB - 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - - DapB_C,DapB_N DYD2_k127_483492_5 1382359.JIAL01000001_gene2279 7.227e-19 89.0 COG0624@1|root,COG0624@2|Bacteria,3Y2K0@57723|Acidobacteria,2JIEY@204432|Acidobacteriia 204432|Acidobacteriia E PFAM peptidase - - 3.5.1.16 ko:K01438 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R00669,R09107 RC00064,RC00300 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20 DYD2_k127_4838053_1 1121396.KB893060_gene2850 3.017e-56 206.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,2MIB8@213118|Desulfobacterales 28221|Deltaproteobacteria T response regulator receiver - - - ko:K02481,ko:K07713 ko02020,map02020 M00499 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_4838053_3 743722.Sph21_2115 1.064e-25 111.0 COG3467@1|root,COG3467@2|Bacteria,4NQFR@976|Bacteroidetes,1ITPB@117747|Sphingobacteriia 976|Bacteroidetes S SPTR Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein - - - ko:K07005 - - - - ko00000 - - - Pyridox_ox_2 DYD2_k127_4838053_2 1449065.JMLL01000011_gene2066 3.018e-39 152.0 COG3467@1|root,COG3467@2|Bacteria,1NMEU@1224|Proteobacteria,2USRA@28211|Alphaproteobacteria,43KB7@69277|Phyllobacteriaceae 28211|Alphaproteobacteria S Pyridoxamine 5'-phosphate oxidase - - - ko:K07005 - - - - ko00000 - - - Pyridox_ox_2 DYD2_k127_4838053_0 297246.lpp1521 1.715e-81 278.0 COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,1RS3D@1236|Gammaproteobacteria,1JGIA@118969|Legionellales 118969|Legionellales S VIT family - - - - - - - - - - - - VIT1 DYD2_k127_4838053_4 479432.Sros_4567 3.721e-06 53.0 2BVEX@1|root,32QUF@2|Bacteria,2IKS8@201174|Actinobacteria 201174|Actinobacteria S Family of unknown function (DUF5335) - - - - - - - - - - - - DUF5335 DYD2_k127_4850559_2 398767.Glov_0093 4.903e-16 80.0 COG3177@1|root,COG3177@2|Bacteria,1NB0K@1224|Proteobacteria,42QY1@68525|delta/epsilon subdivisions,2WMXE@28221|Deltaproteobacteria 28221|Deltaproteobacteria K PFAM filamentation induced by cAMP protein Fic - - - - - - - - - - - - Fic DYD2_k127_4850559_1 243231.GSU0260 2.344e-20 98.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - ko:K06149 - - - - ko00000 - - - Usp DYD2_k127_4850559_3 1082932.ATCR1_21939 3.963e-07 57.0 COG1734@1|root,COG1734@2|Bacteria,1N8K6@1224|Proteobacteria,2UCF1@28211|Alphaproteobacteria,4BG7X@82115|Rhizobiaceae 28211|Alphaproteobacteria T DnaK suppressor protein dskA - - - - - - - - - - - zf-dskA_traR DYD2_k127_4850559_0 639030.JHVA01000001_gene3668 1.348e-20 94.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,3Y950@57723|Acidobacteria 57723|Acidobacteria G PEP-utilising enzyme, mobile domain - - - - - - - - - - - - PEP-utilizers,PEP-utilizers_C,PPDK_N DYD2_k127_4852264_0 323098.Nwi_0270 2.877e-78 267.0 COG4096@1|root,COG4096@2|Bacteria,1QTS7@1224|Proteobacteria,2TUKC@28211|Alphaproteobacteria,3JXID@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L EcoEI R protein C-terminal - - 3.1.21.3 ko:K01153 - - - - ko00000,ko01000,ko02048 - - - DUF4145,EcoEI_R_C,HSDR_N,HSDR_N_2,Helicase_C,ResIII DYD2_k127_4852264_3 1121413.JMKT01000001_gene1686 4.515e-37 145.0 COG0399@1|root,COG0399@2|Bacteria,1N0QW@1224|Proteobacteria,42W70@68525|delta/epsilon subdivisions,2X245@28221|Deltaproteobacteria,2MFSC@213115|Desulfovibrionales 28221|Deltaproteobacteria M 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP DYD2_k127_4852264_1 671143.DAMO_1974 5.21e-51 193.0 COG5340@1|root,COG5340@2|Bacteria 2|Bacteria K Psort location Cytoplasmic, score - - - - - - - - - - - - AbiEi_4 DYD2_k127_4852264_4 671143.DAMO_0399 1.923e-29 130.0 COG1708@1|root,COG1708@2|Bacteria,2NS1D@2323|unclassified Bacteria 2|Bacteria S Nucleotidyltransferase domain - - - ko:K07076 - - - - ko00000 - - - NTP_transf_2 DYD2_k127_4852264_5 46234.ANA_C20562 1.579e-20 95.0 COG1895@1|root,COG1895@2|Bacteria,1G7UH@1117|Cyanobacteria 1117|Cyanobacteria S PFAM HEPN domain - - - - - - - - - - - - HEPN DYD2_k127_4852264_2 247490.KSU1_C0671 2.192e-46 168.0 COG0286@1|root,COG0286@2|Bacteria,2IXEQ@203682|Planctomycetes 203682|Planctomycetes V COG0286 Type I restriction-modification system - - 2.1.1.72 ko:K03427 - - - - ko00000,ko01000,ko02048 - - - HsdM_N,N6_Mtase DYD2_k127_4863114_2 926569.ANT_02690 1.53e-112 369.0 COG1884@1|root,COG1884@2|Bacteria,2G5TP@200795|Chloroflexi 200795|Chloroflexi I TIGRFAM methylmalonyl-CoA mutase, large subunit - - 5.4.99.2 ko:K01847,ko:K01848 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00373,M00375,M00376,M00741 R00833 RC00395 ko00000,ko00001,ko00002,ko01000 - - - B12-binding,MM_CoA_mutase DYD2_k127_4863114_3 204669.Acid345_0050 5.161e-98 329.0 COG0726@1|root,COG0726@2|Bacteria 2|Bacteria G polysaccharide deacetylase - - 3.5.1.104 ko:K22278 - - - - ko00000,ko01000 - - - Polysacc_deac_1 DYD2_k127_4863114_1 1128421.JAGA01000002_gene157 3.344e-120 395.0 COG0444@1|root,COG0444@2|Bacteria,2NR32@2323|unclassified Bacteria 2|Bacteria P Oligopeptide/dipeptide transporter, C-terminal region oppD - - ko:K02031,ko:K02032 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - ABC_tran,oligo_HPY DYD2_k127_4863114_0 1051632.TPY_0985 1.99e-135 438.0 COG4608@1|root,COG4608@2|Bacteria,1V36J@1239|Firmicutes,24C3R@186801|Clostridia,3WCUJ@538999|Clostridiales incertae sedis 186801|Clostridia P Belongs to the ABC transporter superfamily - - - ko:K02032,ko:K10823 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00239,M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - ABC_tran,oligo_HPY DYD2_k127_4863818_3 1255043.TVNIR_3868 5.694e-10 61.0 COG2442@1|root,COG2442@2|Bacteria,1N8Z1@1224|Proteobacteria,1SEX2@1236|Gammaproteobacteria,1X23W@135613|Chromatiales 135613|Chromatiales S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_4863818_0 204669.Acid345_2712 3.909e-160 520.0 COG3005@1|root,COG3005@2|Bacteria,3Y3MU@57723|Acidobacteria,2JJ6B@204432|Acidobacteriia 57723|Acidobacteria C NapC/NirT cytochrome c family, N-terminal region - - - - - - - - - - - - Cytochrom_NNT DYD2_k127_4863818_2 243231.GSU2210 7.799e-12 76.0 COG0484@1|root,COG0484@2|Bacteria,1QXP1@1224|Proteobacteria,43C4V@68525|delta/epsilon subdivisions,2X7F8@28221|Deltaproteobacteria,43W46@69541|Desulfuromonadales 28221|Deltaproteobacteria C Cytochrome c7 and related cytochrome c - - - - - - - - - - - - Cytochrome_C7 DYD2_k127_4863818_4 161156.JQKW01000001_gene1417 0.0004158 52.0 COG0484@1|root,COG0484@2|Bacteria,2GH4S@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria O Class III cytochrome C family - - - - - - - - - - - - Cytochrom_CIII DYD2_k127_4863818_1 234267.Acid_6725 1.193e-12 73.0 28MCK@1|root,2ZAQP@2|Bacteria,3Y41I@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_4870325_3 861299.J421_3597 1.977e-12 67.0 COG0022@1|root,COG0022@2|Bacteria,1ZT89@142182|Gemmatimonadetes 2|Bacteria C Transketolase, pyrimidine binding domain bfmBA - 1.2.4.4 ko:K00167,ko:K11381,ko:K21417 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C DYD2_k127_4870325_1 1121918.ARWE01000001_gene2152 1.704e-42 156.0 2C82G@1|root,32RK9@2|Bacteria,1MZV5@1224|Proteobacteria,42U4W@68525|delta/epsilon subdivisions,2WQ9S@28221|Deltaproteobacteria,43VBS@69541|Desulfuromonadales 28221|Deltaproteobacteria S Protein of unknown function (DUF4242) - - - - - - - - - - - - DUF4242 DYD2_k127_4870325_0 861299.J421_3595 7.921e-132 435.0 COG0508@1|root,COG0508@2|Bacteria,1ZT7I@142182|Gemmatimonadetes 142182|Gemmatimonadetes C 2-oxoacid dehydrogenases acyltransferase (catalytic domain) - - 2.3.1.61 ko:K00658 ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R02570,R02571,R08549 RC00004,RC02727,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding DYD2_k127_4870325_2 204669.Acid345_1725 5.601e-36 151.0 COG2885@1|root,COG2885@2|Bacteria,3Y7Y8@57723|Acidobacteria,2JMX3@204432|Acidobacteriia 204432|Acidobacteriia M OmpA family - - - - - - - - - - - - OmpA DYD2_k127_4877804_1 1183438.GKIL_3324 1.068e-90 313.0 COG0477@1|root,COG2814@2|Bacteria,1G2N2@1117|Cyanobacteria 1117|Cyanobacteria EGP Major facilitator superfamily - - - - - - - - - - - - MFS_3 DYD2_k127_4877804_0 1499967.BAYZ01000173_gene5813 3.113e-147 491.0 COG2304@1|root,COG2304@2|Bacteria,2NPZM@2323|unclassified Bacteria 2|Bacteria S Vault protein inter-alpha-trypsin domain - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - FecR,VIT,VWA,VWA_3 DYD2_k127_4879174_3 1382359.JIAL01000001_gene2868 5.126e-06 52.0 COG3485@1|root,COG3485@2|Bacteria,3Y44E@57723|Acidobacteria,2JIGS@204432|Acidobacteriia 204432|Acidobacteriia Q Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_4879174_0 204669.Acid345_3357 1.157e-180 601.0 COG4191@1|root,COG4191@2|Bacteria,3Y3X4@57723|Acidobacteria,2JING@204432|Acidobacteriia 204432|Acidobacteriia T Histidine kinase - - - - - - - - - - - - GAF_2,GAF_3,HATPase_c,HisKA,HisKA_7TM,PAS,PAS_4 DYD2_k127_4879174_1 240015.ACP_0180 5.324e-125 417.0 COG2204@1|root,COG2204@2|Bacteria,3Y3T2@57723|Acidobacteria,2JIG9@204432|Acidobacteriia 204432|Acidobacteriia T response regulator, receiver - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_4879174_2 1449336.JQLO01000001_gene137 4.329e-21 98.0 COG1733@1|root,COG1733@2|Bacteria,1VA9M@1239|Firmicutes,4HQ5J@91061|Bacilli 91061|Bacilli K HxlR-like helix-turn-helix - - - - - - - - - - - - HxlR DYD2_k127_488403_1 395961.Cyan7425_2664 1.76e-26 110.0 COG1453@1|root,COG1453@2|Bacteria 2|Bacteria S Aldo/keto reductase family asrA - - ko:K16950 ko00920,ko01120,map00920,map01120 - R00858,R10146 RC00065 ko00000,ko00001 - - - Aldo_ket_red,Fer4_22 DYD2_k127_488403_0 765912.Thimo_0160 2.404e-217 682.0 COG0491@1|root,COG0607@1|root,COG0491@2|Bacteria,COG0607@2|Bacteria,1MUDN@1224|Proteobacteria,1RMMG@1236|Gammaproteobacteria,1WXIJ@135613|Chromatiales 135613|Chromatiales P Metallo-beta-lactamase superfamily - - 3.1.2.6 ko:K01069 ko00620,map00620 - R01736 RC00004,RC00137 ko00000,ko00001,ko01000 - - - Lactamase_B,Rhodanese DYD2_k127_488403_4 309801.trd_A0311 1.36e-16 81.0 COG0517@1|root,COG0589@1|root,COG0517@2|Bacteria,COG0589@2|Bacteria,2GBED@200795|Chloroflexi,27Z4M@189775|Thermomicrobia 189775|Thermomicrobia T Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS,Usp DYD2_k127_488403_2 177437.HRM2_33460 1.718e-24 112.0 COG0589@1|root,COG0589@2|Bacteria,1MVZS@1224|Proteobacteria,42QGY@68525|delta/epsilon subdivisions,2WKHR@28221|Deltaproteobacteria,2MJDT@213118|Desulfobacterales 28221|Deltaproteobacteria T Universal stress protein family - - - - - - - - - - - - Usp DYD2_k127_488403_5 1123368.AUIS01000010_gene2399 3.294e-08 65.0 COG0589@1|root,COG0589@2|Bacteria,1QCT3@1224|Proteobacteria,1SI82@1236|Gammaproteobacteria,2ND1N@225057|Acidithiobacillales 225057|Acidithiobacillales T Universal stress protein family - - - - - - - - - - - - Usp DYD2_k127_488403_3 243231.GSU0260 1.038e-18 98.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - ko:K06149 - - - - ko00000 - - - Usp DYD2_k127_4884259_1 244447.XP_008326018.1 4.466e-68 236.0 COG3340@1|root,2QR7X@2759|Eukaryota,39DGA@33154|Opisthokonta,3BC18@33208|Metazoa,3CWYN@33213|Bilateria,484TW@7711|Chordata,499CC@7742|Vertebrata,4A18S@7898|Actinopterygii 33208|Metazoa E Alpha-aspartyl dipeptidase-like - GO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:0140096,GO:1901564 3.4.13.21 ko:K05995 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S51 DYD2_k127_4884259_0 700598.Niako_6986 5.831e-83 289.0 COG0477@1|root,COG2814@2|Bacteria 2|Bacteria EGP Major facilitator Superfamily - - - - - - - - - - - - MFS_1,MFS_1_like,Sugar_tr DYD2_k127_4884259_3 292459.STH996 3.885e-54 199.0 COG0725@1|root,COG0725@2|Bacteria,1U9U3@1239|Firmicutes,249VA@186801|Clostridia 186801|Clostridia P ABC transporter, periplasmic molybdate-binding protein modA - - ko:K02020 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 3.A.1.8 - iHN637.CLJU_RS12820 SBP_bac_11 DYD2_k127_4884259_2 309801.trd_A0708 3.414e-56 207.0 COG1680@1|root,COG1680@2|Bacteria,2GAJ8@200795|Chloroflexi,27YVH@189775|Thermomicrobia 189775|Thermomicrobia V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD2_k127_4888549_0 443144.GM21_3621 1.042e-50 188.0 COG1878@1|root,COG1878@2|Bacteria,1P8U5@1224|Proteobacteria,42SY1@68525|delta/epsilon subdivisions,2WPQ7@28221|Deltaproteobacteria,43V12@69541|Desulfuromonadales 28221|Deltaproteobacteria S Putative cyclase - - 3.5.1.9 ko:K07130 ko00380,ko00630,ko01100,map00380,map00630,map01100 M00038 R00988,R01959,R04911 RC00263,RC00323 ko00000,ko00001,ko00002,ko01000 - - - Cyclase DYD2_k127_4888549_3 937777.Deipe_2668 7.601e-25 109.0 COG3695@1|root,COG3695@2|Bacteria 2|Bacteria L enzyme binding ogt - 2.1.1.63 ko:K00567,ko:K07443 - - - - ko00000,ko01000,ko03400 - - - DNA_binding_1,YjbR DYD2_k127_4888549_1 316274.Haur_0239 5.154e-44 164.0 COG0393@1|root,COG0393@2|Bacteria 2|Bacteria S Putative heavy-metal-binding ybjQ - - - - - - - - - - - YbjQ_1 DYD2_k127_4888549_4 1120985.AUMI01000011_gene590 1.349e-11 72.0 COG2050@1|root,COG2050@2|Bacteria,1VFCX@1239|Firmicutes,4H5PY@909932|Negativicutes 909932|Negativicutes Q Thioesterase superfamily - - - - - - - - - - - - 4HBT DYD2_k127_4888549_2 401526.TcarDRAFT_0275 7.493e-33 144.0 COG2199@1|root,COG3706@2|Bacteria,1V469@1239|Firmicutes,4H4YE@909932|Negativicutes 909932|Negativicutes T diguanylate cyclase - - - - - - - - - - - - GGDEF,HAMP,PAS_9 DYD2_k127_4888683_0 234267.Acid_2017 9.252e-170 551.0 COG1506@1|root,COG1506@2|Bacteria,3Y2HK@57723|Acidobacteria 57723|Acidobacteria E Dienelactone hydrolase family - - - - - - - - - - - - Peptidase_S9 DYD2_k127_4888683_11 1316932.MHH_c16390 3.645e-10 69.0 COG1943@1|root,COG1943@2|Bacteria,1RDD7@1224|Proteobacteria,1S4R2@1236|Gammaproteobacteria,1YASK@135625|Pasteurellales 135625|Pasteurellales L Transposase IS200 like - - - ko:K07491 - - - - ko00000 - - - Y1_Tnp DYD2_k127_4888683_4 234267.Acid_1848 3.721e-51 198.0 COG0477@1|root,COG2814@2|Bacteria 2|Bacteria EGP Major facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD2_k127_4888683_12 883.DvMF_2961 2.63e-06 54.0 2E6J8@1|root,3316B@2|Bacteria,1N7GY@1224|Proteobacteria,42V6W@68525|delta/epsilon subdivisions,2WRHG@28221|Deltaproteobacteria,2MC8I@213115|Desulfovibrionales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_4888683_7 335543.Sfum_0084 4.248e-35 137.0 COG0724@1|root,COG0724@2|Bacteria,1N6VR@1224|Proteobacteria,42UQP@68525|delta/epsilon subdivisions,2WQKU@28221|Deltaproteobacteria,2MS96@213462|Syntrophobacterales 28221|Deltaproteobacteria S RNA recognition motif - - - - - - - - - - - - RRM_1 DYD2_k127_4888683_1 1382359.JIAL01000001_gene1929 1.17e-118 387.0 COG1398@1|root,COG1398@2|Bacteria,3Y3F9@57723|Acidobacteria,2JHWH@204432|Acidobacteriia 204432|Acidobacteriia I PFAM Fatty acid desaturase - - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase DYD2_k127_4888683_2 1267535.KB906767_gene897 2.805e-98 330.0 COG5002@1|root,COG5002@2|Bacteria,3Y99C@57723|Acidobacteria,2JP5N@204432|Acidobacteriia 204432|Acidobacteriia T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_4888683_3 234267.Acid_2403 1.482e-94 315.0 COG0745@1|root,COG0745@2|Bacteria,3Y4FA@57723|Acidobacteria 57723|Acidobacteria T PFAM response regulator receiver - - - - - - - - - - - - Response_reg,Trans_reg_C DYD2_k127_4888683_13 1340493.JNIF01000003_gene3381 4.629e-06 49.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis tccC1 - - ko:K11021 - - - - ko00000,ko02042 - - - - DYD2_k127_4888683_15 1120980.JQKH01000014_gene783 1.384e-05 56.0 COG3392@1|root,COG3392@2|Bacteria,1R84X@1224|Proteobacteria,2VYIJ@28216|Betaproteobacteria,2KS59@206351|Neisseriales 206351|Neisseriales L D12 class N6 adenine-specific DNA methyltransferase - - - - - - - - - - - - MethyltransfD12 DYD2_k127_4888683_5 1449126.JQKL01000040_gene1098 3.859e-36 145.0 COG2203@1|root,COG3437@1|root,COG4936@1|root,COG2203@2|Bacteria,COG3437@2|Bacteria,COG4936@2|Bacteria,1V7YT@1239|Firmicutes,25ET2@186801|Clostridia 186801|Clostridia T metal-dependent phosphohydrolase, HD sub domain - - - - - - - - - - - - GAF_2,HD,PocR,SBP_bac_3 DYD2_k127_4888683_14 864702.OsccyDRAFT_3562 6.588e-06 59.0 COG0484@1|root,COG0484@2|Bacteria,1FZXU@1117|Cyanobacteria,1HA29@1150|Oscillatoriales 1117|Cyanobacteria O DnaJ C terminal domain - - - ko:K05516 - - - - ko00000,ko03036,ko03110 - - - DnaJ,DnaJ_C DYD2_k127_4888683_10 1144275.COCOR_03344 1.468e-13 83.0 COG0745@1|root,COG0745@2|Bacteria 1144275.COCOR_03344|- T phosphorelay signal transduction system - - - - - - - - - - - - - DYD2_k127_4888683_8 886293.Sinac_1778 1.399e-31 137.0 COG0642@1|root,COG3850@1|root,COG2205@2|Bacteria,COG3850@2|Bacteria,2IXA1@203682|Planctomycetes 203682|Planctomycetes T Histidine kinase - - - - - - - - - - - - DUF3365,HAMP,HATPase_c,HisKA DYD2_k127_4888683_6 368408.Tpen_1785 3.264e-35 145.0 COG3375@1|root,arCOG04215@2157|Archaea,2XQCZ@28889|Crenarchaeota 28889|Crenarchaeota M carboxylic acid catabolic process - - - - - - - - - - - - Acetyltransf_1 DYD2_k127_4888683_9 1118054.CAGW01000024_gene451 1.005e-28 120.0 COG0624@1|root,COG0624@2|Bacteria,1TP2D@1239|Firmicutes,4HB9G@91061|Bacilli,26SYE@186822|Paenibacillaceae 91061|Bacilli E peptidase M20 dapE - 3.5.1.18 ko:K01439 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R02734 RC00064,RC00090 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20 DYD2_k127_4889311_0 395495.Lcho_2499 1.254e-62 226.0 COG3267@1|root,COG3267@2|Bacteria,1MU3G@1224|Proteobacteria,2VIK1@28216|Betaproteobacteria,1KJ25@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Type II secretory pathway, component ExeA exeA - - ko:K02450 - M00331 - - ko00000,ko00002,ko02044 9.B.42 - - AAA_22,PG_binding_1 DYD2_k127_4889311_1 56780.SYN_01204 6.664e-27 126.0 COG3206@1|root,COG3206@2|Bacteria,1MVBX@1224|Proteobacteria,42M2D@68525|delta/epsilon subdivisions,2WJU6@28221|Deltaproteobacteria 28221|Deltaproteobacteria M Lipopolysaccharide biosynthesis protein wzc1 - - - - - - - - - - - GNVR,Wzz DYD2_k127_4889311_2 237368.SCABRO_01029 7.121e-22 100.0 COG0457@1|root,COG0457@2|Bacteria,2J4N3@203682|Planctomycetes 203682|Planctomycetes S Tetratricopeptide repeat - - - - - - - - - - - - TPR_8 DYD2_k127_4896497_1 339670.Bamb_5458 5.542e-89 300.0 COG2267@1|root,COG2267@2|Bacteria,1NK3M@1224|Proteobacteria,2VM9G@28216|Betaproteobacteria,1KG5Q@119060|Burkholderiaceae 28216|Betaproteobacteria I Alpha beta hydrolase pepIP - - - - - - - - - - - Abhydrolase_1,Hydrolase_4 DYD2_k127_4896497_2 1122604.JONR01000009_gene2358 3.515e-44 169.0 COG0789@1|root,COG0789@2|Bacteria,1N3NG@1224|Proteobacteria,1SA4T@1236|Gammaproteobacteria,1X7F0@135614|Xanthomonadales 135614|Xanthomonadales K MerR HTH family regulatory protein - - - - - - - - - - - - MerR_1 DYD2_k127_4896497_3 1158292.JPOE01000002_gene3587 1.154e-10 64.0 COG3335@1|root,COG3335@2|Bacteria,1MW8A@1224|Proteobacteria,2W0I7@28216|Betaproteobacteria 28216|Betaproteobacteria L Winged helix-turn helix - - - - - - - - - - - - DDE_3,HTH_29,HTH_33 DYD2_k127_4896497_4 325777.GW15_0205630 1.332e-07 55.0 COG3039@1|root,COG3039@2|Bacteria 2|Bacteria L Transposase - - - ko:K07481 - - - - ko00000 - - - DDE_Tnp_1,DUF772 DYD2_k127_4896497_0 1123367.C666_11270 4.543e-147 472.0 COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2VJHE@28216|Betaproteobacteria 28216|Betaproteobacteria S PFAM Alcohol dehydrogenase zinc-binding domain protein - - - ko:K07119 - - - - ko00000 - - - ADH_N_2,ADH_zinc_N DYD2_k127_4901993_2 396588.Tgr7_1534 2.454e-05 50.0 COG0182@1|root,COG0182@2|Bacteria,1MUPM@1224|Proteobacteria,1RMGC@1236|Gammaproteobacteria,1WWQU@135613|Chromatiales 135613|Chromatiales E Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) mtnA - 5.3.1.23 ko:K08963 ko00270,ko01100,map00270,map01100 M00034 R04420 RC01151 ko00000,ko00001,ko00002,ko01000 - - - IF-2B DYD2_k127_4901993_1 662479.C440_00765 2.032e-30 129.0 COG2820@1|root,arCOG01324@2157|Archaea,2XSWN@28890|Euryarchaeota,23SKE@183963|Halobacteria 183963|Halobacteria F Uridine phosphorylase udp2 - 2.4.2.3 ko:K00757 ko00240,ko00983,ko01100,map00240,map00983,map01100 - R01876,R02484,R08229 RC00063 ko00000,ko00001,ko01000 - - - PNP_UDP_1 DYD2_k127_4901993_0 903818.KI912269_gene284 1.769e-47 177.0 COG0247@1|root,COG0247@2|Bacteria,3Y3RK@57723|Acidobacteria 57723|Acidobacteria C Cysteine-rich domain - - - - - - - - - - - - CCG,Fer4_8 DYD2_k127_4903789_0 1304885.AUEY01000044_gene230 7.41e-14 78.0 COG1404@1|root,COG2911@1|root,COG3209@1|root,COG3420@1|root,COG3591@1|root,COG4677@1|root,COG1404@2|Bacteria,COG2911@2|Bacteria,COG3209@2|Bacteria,COG3420@2|Bacteria,COG3591@2|Bacteria,COG4677@2|Bacteria,1P8N9@1224|Proteobacteria,43DXZ@68525|delta/epsilon subdivisions,2X72D@28221|Deltaproteobacteria,2MNHJ@213118|Desulfobacterales 28221|Deltaproteobacteria E alginic acid biosynthetic process - - - - - - - - - - - - DUF1573 DYD2_k127_4905911_0 251229.Chro_3079 7.797e-78 269.0 COG1295@1|root,COG1295@2|Bacteria,1G1HS@1117|Cyanobacteria,3VJ5H@52604|Pleurocapsales 1117|Cyanobacteria S TIGRFAM YihY family protein (not ribonuclease BN) rbn - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB DYD2_k127_4905911_1 526227.Mesil_0626 1.179e-36 140.0 COG3059@1|root,COG3059@2|Bacteria,1WMV5@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S membrane - - - - - - - - - - - - - DYD2_k127_4913861_0 56110.Oscil6304_2414 1.532e-06 61.0 COG3420@1|root,COG3420@2|Bacteria 2|Bacteria P alginic acid biosynthetic process - - - - - - - - - - - - Beta_helix,DUF1565 DYD2_k127_4923237_0 360911.EAT1b_1325 9.603e-176 560.0 COG0112@1|root,COG0112@2|Bacteria,1TQVM@1239|Firmicutes,4HA5K@91061|Bacilli,3WE62@539002|Bacillales incertae sedis 91061|Bacilli E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism glyA - 2.1.2.1 ko:K00600 ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523 M00140,M00141,M00346,M00532 R00945,R09099 RC00022,RC00112,RC01583,RC02958 ko00000,ko00001,ko00002,ko01000 - - - SHMT DYD2_k127_4923237_2 1382304.JNIL01000001_gene2347 1.745e-46 171.0 COG0698@1|root,COG0698@2|Bacteria,1V3HE@1239|Firmicutes,4HGXD@91061|Bacilli,278B9@186823|Alicyclobacillaceae 91061|Bacilli G Ribose/Galactose Isomerase rpiB - 5.3.1.6 ko:K01808 ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01056,R09030 RC00376,RC00434 ko00000,ko00001,ko00002,ko01000 - - - LacAB_rpiB DYD2_k127_4923237_3 1121931.AUHG01000010_gene708 2.263e-46 176.0 COG4845@1|root,COG4845@2|Bacteria,4NPDG@976|Bacteroidetes,1I20U@117743|Flavobacteriia 976|Bacteroidetes V Chloramphenicol acetyltransferase cat - 2.3.1.28 ko:K19271 - - - - br01600,ko00000,ko01000,ko01504 - - - CAT DYD2_k127_4923237_1 404589.Anae109_0478 3.741e-128 415.0 COG0442@1|root,COG0442@2|Bacteria,1MU7E@1224|Proteobacteria,42ME5@68525|delta/epsilon subdivisions,2WKA2@28221|Deltaproteobacteria,2YZII@29|Myxococcales 28221|Deltaproteobacteria J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS proS - 6.1.1.15 ko:K01881 ko00970,map00970 M00359,M00360 R03661 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_2b,tRNA_edit DYD2_k127_4933359_1 926566.Terro_4312 6.861e-27 120.0 COG1629@1|root,COG4771@2|Bacteria,3Y7A5@57723|Acidobacteria,2JKGX@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug DYD2_k127_4933359_0 1499968.TCA2_5186 2.166e-58 218.0 COG1940@1|root,COG1940@2|Bacteria,1TQCE@1239|Firmicutes,4HDE3@91061|Bacilli,26RTN@186822|Paenibacillaceae 91061|Bacilli GK ROK family xylR5 - - - - - - - - - - - HTH_24,HTH_27,HTH_IclR,ROK DYD2_k127_4933359_2 204669.Acid345_1678 8.9e-13 68.0 COG4932@1|root,COG4932@2|Bacteria,3Y98G@57723|Acidobacteria,2JP50@204432|Acidobacteriia 204432|Acidobacteriia M domain protein - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_4934026_0 344747.PM8797T_21603 8.544e-166 548.0 COG1520@1|root,COG1520@2|Bacteria,2IX37@203682|Planctomycetes 203682|Planctomycetes S protein kinase related protein - - - - - - - - - - - - PQQ_2 DYD2_k127_4944006_1 1267535.KB906767_gene3354 6.772e-70 259.0 COG0741@1|root,COG1388@1|root,COG0741@2|Bacteria,COG1388@2|Bacteria,3Y38S@57723|Acidobacteria,2JHZB@204432|Acidobacteriia 204432|Acidobacteriia M Lysin motif - - - ko:K08307 - - - - ko00000,ko01000,ko01011 - - - LysM,SLT DYD2_k127_4944006_2 583355.Caka_3022 1.143e-38 152.0 COG0639@1|root,COG0639@2|Bacteria,46VJ1@74201|Verrucomicrobia,3K7WT@414999|Opitutae 414999|Opitutae T Calcineurin-like phosphoesterase superfamily domain - - - - - - - - - - - - Metallophos DYD2_k127_4944006_0 1303518.CCALI_00492 3.36e-205 661.0 COG0855@1|root,COG0855@2|Bacteria 2|Bacteria P Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) ppk GO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0008976,GO:0009267,GO:0009405,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0015968,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0036293,GO:0040007,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044419,GO:0044464,GO:0046777,GO:0046872,GO:0050896,GO:0051704,GO:0051716,GO:0070482,GO:0071496,GO:0071704,GO:0071944,GO:1901564 2.7.4.1 ko:K00937 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PP_kinase,PP_kinase_C,PP_kinase_N DYD2_k127_4944006_3 1049564.TevJSym_az00020 2.547e-05 53.0 COG1285@1|root,COG1285@2|Bacteria,1PD3I@1224|Proteobacteria,1RQXT@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Domain of unknown function (DUF4956) - - - - - - - - - - - - DUF4956 DYD2_k127_4944472_3 351016.RAZWK3B_00170 1.454e-12 78.0 COG0438@1|root,COG0438@2|Bacteria,1QFQQ@1224|Proteobacteria,2U3JJ@28211|Alphaproteobacteria,2P4YZ@2433|Roseobacter 28211|Alphaproteobacteria M Glycosyl transferase group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_4944472_0 533247.CRD_02456 1.857e-119 396.0 COG0438@1|root,COG0438@2|Bacteria,1G222@1117|Cyanobacteria,1HN97@1161|Nostocales 1117|Cyanobacteria M Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_4944472_2 1174528.JH992898_gene3796 1.953e-13 83.0 28JDY@1|root,2Z987@2|Bacteria,1G20Y@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - O-ag_pol_Wzy DYD2_k127_4944472_1 985867.AEWF01000010_gene1205 4.291e-30 126.0 COG0500@1|root,COG2226@2|Bacteria,1NKPR@1224|Proteobacteria,2V82T@28211|Alphaproteobacteria,47GKR@766|Rickettsiales 766|Rickettsiales Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - - DYD2_k127_4949108_1 1173026.Glo7428_3317 2.359e-132 437.0 COG1249@1|root,COG1249@2|Bacteria,1G198@1117|Cyanobacteria 1117|Cyanobacteria C Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase - - - - - - - - - - - - Pyr_redox_2,Pyr_redox_dim DYD2_k127_4949108_0 485913.Krac_5329 4.796e-159 510.0 COG2124@1|root,COG2124@2|Bacteria,2G5KX@200795|Chloroflexi 200795|Chloroflexi C Cytochrome P450 - - - - - - - - - - - - p450 DYD2_k127_4949108_2 1449346.JQMO01000003_gene6778 9.44e-68 237.0 COG2866@1|root,COG2866@2|Bacteria,2GN49@201174|Actinobacteria 201174|Actinobacteria E carboxypeptidase - - - - - - - - - - - - Peptidase_M14 DYD2_k127_4951649_1 234267.Acid_4250 9.158e-51 196.0 COG0644@1|root,COG0644@2|Bacteria,3Y5JJ@57723|Acidobacteria 57723|Acidobacteria C TIGRFAM geranylgeranyl reductase - - - - - - - - - - - - FAD_binding_3,Pyr_redox_2 DYD2_k127_4951649_0 1173026.Glo7428_0383 4.444e-74 254.0 COG0259@1|root,COG0259@2|Bacteria,1G0HC@1117|Cyanobacteria 1117|Cyanobacteria H Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) pdxH - 1.4.3.5 ko:K00275 ko00750,ko01100,ko01120,map00750,map01100,map01120 M00124 R00277,R00278,R01710,R01711 RC00048,RC00116 ko00000,ko00001,ko00002,ko01000 - - iJN678.pdxH PNP_phzG_C,Putative_PNPOx DYD2_k127_4954735_1 234267.Acid_7677 5.62e-60 212.0 COG1595@1|root,COG1595@2|Bacteria,3Y7UW@57723|Acidobacteria 57723|Acidobacteria K ECF sigma factor - - - - - - - - - - - - Sigma70_ECF DYD2_k127_4954735_0 1267535.KB906767_gene1129 1.174e-159 540.0 COG0515@1|root,COG0515@2|Bacteria,3Y4IC@57723|Acidobacteria,2JJ7M@204432|Acidobacteriia 204432|Acidobacteriia KLT Protein kinase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase DYD2_k127_4954735_2 1121920.AUAU01000012_gene2631 4.254e-49 196.0 COG1629@1|root,COG4771@2|Bacteria,3Y3ZU@57723|Acidobacteria 57723|Acidobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_4967801_0 314230.DSM3645_01826 8.901e-96 327.0 COG0464@1|root,COG0464@2|Bacteria,2IX7A@203682|Planctomycetes 203682|Planctomycetes O growth - - - - - - - - - - - - - DYD2_k127_4967801_2 883.DvMF_2735 1.881e-19 100.0 COG0457@1|root,COG0457@2|Bacteria,1PDTX@1224|Proteobacteria,42RK5@68525|delta/epsilon subdivisions,2WNZC@28221|Deltaproteobacteria,2M93P@213115|Desulfovibrionales 28221|Deltaproteobacteria D repeat-containing protein - - - - - - - - - - - - SPOR,TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_8 DYD2_k127_4967801_1 521674.Plim_1916 3.174e-52 197.0 COG2064@1|root,COG2064@2|Bacteria,2IYG1@203682|Planctomycetes 203682|Planctomycetes NU Secretion system protein - - - ko:K12511 - - - - ko00000,ko02044 - - - T2SSF DYD2_k127_4968403_1 234267.Acid_0496 9.031e-91 307.0 COG1999@1|root,COG1999@2|Bacteria,3Y3XH@57723|Acidobacteria 57723|Acidobacteria S signal sequence binding - - - ko:K07152 - - - - ko00000,ko03029 - - - SCO1-SenC DYD2_k127_4968403_4 1128421.JAGA01000003_gene2875 2.129e-05 53.0 2EJZ3@1|root,33DPP@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_4968403_0 1128421.JAGA01000003_gene2874 7.001e-121 400.0 COG4531@1|root,COG4531@2|Bacteria,2NP5Y@2323|unclassified Bacteria 2|Bacteria P ABC-type Zn2 transport system, periplasmic component surface adhesin actF - - - - - - - - - - - - DYD2_k127_4968403_2 1340493.JNIF01000004_gene149 5.623e-51 192.0 COG2010@1|root,COG2010@2|Bacteria,3Y2MN@57723|Acidobacteria 57723|Acidobacteria C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - Cytochrome_CBB3 DYD2_k127_4968403_3 1128421.JAGA01000003_gene2872 7.334e-37 140.0 COG2010@1|root,COG2010@2|Bacteria,2NPSE@2323|unclassified Bacteria 2|Bacteria C Protein of unknown function (DUF3341) - - - - - - - - - - - - DUF3341 DYD2_k127_4973798_0 1340493.JNIF01000004_gene681 1.775e-114 377.0 COG4948@1|root,COG4948@2|Bacteria,3Y2QQ@57723|Acidobacteria 57723|Acidobacteria M Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) menC - 4.2.1.113 ko:K02549 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116 R04031 RC01053 ko00000,ko00001,ko00002,ko01000 - - - MR_MLE_C,MR_MLE_N DYD2_k127_4973798_1 682795.AciX8_0038 6.372e-88 304.0 COG0624@1|root,COG0624@2|Bacteria,3Y3J0@57723|Acidobacteria,2JI3Y@204432|Acidobacteriia 204432|Acidobacteriia E Peptidase dimerisation domain - - 3.4.17.11 ko:K01295 - - - - ko00000,ko01000,ko01002 - - - M20_dimer,Peptidase_M20,Peptidase_M28 DYD2_k127_4973798_2 426114.THI_1819 4.358e-33 132.0 COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,2VH7N@28216|Betaproteobacteria,1KJRR@119065|unclassified Burkholderiales 28216|Betaproteobacteria L exodeoxyribonuclease III xthA - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos DYD2_k127_4994126_5 1200792.AKYF01000027_gene331 1.327e-42 159.0 COG0139@1|root,COG0140@1|root,COG0139@2|Bacteria,COG0140@2|Bacteria,1UYNA@1239|Firmicutes,4HA9R@91061|Bacilli,26S4F@186822|Paenibacillaceae 91061|Bacilli E Histidine biosynthesis bifunctional protein HisIE hisI - 3.5.4.19,3.6.1.31 ko:K01496,ko:K11755 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035,R04037 RC00002,RC01055 ko00000,ko00001,ko00002,ko01000 - - iSB619.SA_RS14110,iYO844.BSU34860 PRA-CH,PRA-PH DYD2_k127_4994126_0 545276.KB898729_gene1644 9.591e-103 339.0 COG0107@1|root,COG0107@2|Bacteria,1MUS0@1224|Proteobacteria,1RPJQ@1236|Gammaproteobacteria,1WY8J@135613|Chromatiales 135613|Chromatiales E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit hisF - - ko:K02500 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth DYD2_k127_4994126_4 330214.NIDE0983 2.229e-60 214.0 COG0118@1|root,COG0118@2|Bacteria,3J0K7@40117|Nitrospirae 40117|Nitrospirae E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR hisH - - ko:K02501 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - GATase DYD2_k127_4994126_3 518766.Rmar_1569 3.259e-68 237.0 COG0131@1|root,COG0131@2|Bacteria,4NENP@976|Bacteroidetes,1FJ7N@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes E Imidazoleglycerol-phosphate dehydratase hisB GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15,4.2.1.19 ko:K01089,ko:K01693 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R03013,R03457 RC00017,RC00932 ko00000,ko00001,ko00002,ko01000 - - - Hydrolase_like,IGPD,PNK3P DYD2_k127_4994126_2 760568.Desku_1692 8.549e-73 259.0 COG0079@1|root,COG0079@2|Bacteria,1TPUV@1239|Firmicutes,24837@186801|Clostridia,2606W@186807|Peptococcaceae 186801|Clostridia E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC GO:0003674,GO:0003824,GO:0008110,GO:0008483,GO:0016740,GO:0016769 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 DYD2_k127_4994126_1 56780.SYN_01792 2.22e-78 268.0 COG0141@1|root,COG0141@2|Bacteria,1MUUF@1224|Proteobacteria,42M3R@68525|delta/epsilon subdivisions,2WJGT@28221|Deltaproteobacteria,2MQCY@213462|Syntrophobacterales 28221|Deltaproteobacteria E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine hisD GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 ko:K00013 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01158,R01163,R03012 RC00099,RC00242,RC00463 ko00000,ko00001,ko00002,ko01000 - - - Histidinol_dh DYD2_k127_4996387_1 1144275.COCOR_02849 2.54e-104 363.0 2DUXF@1|root,33SVE@2|Bacteria,1QY06@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_4996387_0 1144275.COCOR_02848 1.684e-230 734.0 COG0464@1|root,COG0464@2|Bacteria,1NF48@1224|Proteobacteria,43BJ4@68525|delta/epsilon subdivisions,2WMCV@28221|Deltaproteobacteria,2YXIN@29|Myxococcales 28221|Deltaproteobacteria O ATPase family associated with various cellular activities (AAA) - - - - - - - - - - - - AAA DYD2_k127_4996387_2 485913.Krac_5984 5.832e-43 168.0 COG3115@1|root,COG3115@2|Bacteria 2|Bacteria D cell septum assembly - - - ko:K02487,ko:K06596,ko:K08372 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko01002,ko02022,ko02035 - - - FliO,SPOR,ZipA_C DYD2_k127_5002877_0 179408.Osc7112_5184 6.177e-134 443.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H7F4@1150|Oscillatoriales 1117|Cyanobacteria Q Amino acid adenylation domain protein - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,TPR_1,TPR_8,Thioesterase DYD2_k127_5002877_3 1174528.JH992890_gene587 8.711e-32 126.0 2DZGJ@1|root,32VA0@2|Bacteria,1G8MI@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_5002877_2 118168.MC7420_2523 3.142e-101 340.0 COG2423@1|root,COG2423@2|Bacteria,1G98R@1117|Cyanobacteria,1HGVI@1150|Oscillatoriales 1117|Cyanobacteria E Ornithine cyclodeaminase mu-crystallin family - - - - - - - - - - - - OCD_Mu_crystall DYD2_k127_5002877_1 1174528.JH992893_gene5717 1.637e-130 424.0 COG0031@1|root,COG0031@2|Bacteria,1G0T4@1117|Cyanobacteria,1JI5J@1189|Stigonemataceae 2|Bacteria E Pyridoxal-phosphate dependent enzyme cysM - 2.5.1.140 ko:K21949 - - R11705 - ko00000,ko01000 - - - PALP DYD2_k127_5004733_1 1382359.JIAL01000001_gene880 1.497e-43 163.0 COG0782@1|root,COG0782@2|Bacteria,3Y49X@57723|Acidobacteria,2JJ1A@204432|Acidobacteriia 204432|Acidobacteriia K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides greA - - ko:K03624 - - - - ko00000,ko03021 - - - GreA_GreB,GreA_GreB_N DYD2_k127_5004733_0 1128421.JAGA01000003_gene2902 3.325e-129 422.0 COG0205@1|root,COG0205@2|Bacteria,2NNY2@2323|unclassified Bacteria 2|Bacteria G Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis pfkA - 2.7.1.11,2.7.1.90 ko:K00850,ko:K21071 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230 M00001,M00345 R00756,R00764,R02073,R03236,R03237,R03238,R03239,R04779 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000,ko01009,ko03019 - - iJN678.pfkA PFK DYD2_k127_5004733_2 485913.Krac_9819 2.683e-11 67.0 2DQBG@1|root,335T7@2|Bacteria,2G96K@200795|Chloroflexi 200795|Chloroflexi C Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - - - - - - - - - - GRDB DYD2_k127_501016_1 383372.Rcas_0998 1.381e-106 357.0 COG0153@1|root,COG0153@2|Bacteria,2G6CE@200795|Chloroflexi,375CJ@32061|Chloroflexia 32061|Chloroflexia F Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P) galK - 2.7.1.6 ko:K00849 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00554,M00632 R01092 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko04147 - - - GHMP_kinases_C,GHMP_kinases_N,GalKase_gal_bdg DYD2_k127_501016_0 661478.OP10G_0914 3.375e-209 660.0 COG3250@1|root,COG3250@2|Bacteria 2|Bacteria G beta-galactosidase activity uidA - - - - - - - - - - - Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N DYD2_k127_5033420_4 926569.ANT_23830 9.981e-41 157.0 COG4422@1|root,COG4422@2|Bacteria,2G8KX@200795|Chloroflexi 200795|Chloroflexi S Protein of unknown function (DUF5131) - - - - - - - - - - - - - DYD2_k127_5033420_0 247490.KSU1_C0667 3.452e-117 382.0 COG4422@1|root,COG4422@2|Bacteria,2IY1I@203682|Planctomycetes 203682|Planctomycetes S COG4422 Bacteriophage protein gp37 - - - - - - - - - - - - DUF5131 DYD2_k127_5033420_3 234267.Acid_7037 3.175e-46 177.0 COG0468@1|root,COG0468@2|Bacteria,3Y4QB@57723|Acidobacteria 57723|Acidobacteria L recA bacterial DNA recombination protein - - - - - - - - - - - - RecA DYD2_k127_5033420_1 448385.sce1734 2.674e-87 293.0 COG1573@1|root,COG1573@2|Bacteria,1MW8T@1224|Proteobacteria,42ZZ6@68525|delta/epsilon subdivisions,2WV5A@28221|Deltaproteobacteria,2YZAW@29|Myxococcales 28221|Deltaproteobacteria L Uracil DNA glycosylase superfamily - - 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG DYD2_k127_5033420_2 379066.GAU_1726 5.741e-52 190.0 COG1974@1|root,COG1974@2|Bacteria,1ZSSM@142182|Gemmatimonadetes 142182|Gemmatimonadetes K Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair lexA - 3.4.21.88 ko:K01356 - M00729 - - ko00000,ko00002,ko01000,ko01002,ko03400 - - - LexA_DNA_bind,Peptidase_S24 DYD2_k127_5037292_1 1230476.C207_00147 7.905e-25 109.0 COG3278@1|root,COG3278@2|Bacteria,1NA04@1224|Proteobacteria,2UG1T@28211|Alphaproteobacteria,3K6BG@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria O Belongs to the heme-copper respiratory oxidase family - - - - - - - - - - - - - DYD2_k127_5037292_0 1476876.JOJO01000024_gene1759 3.349e-84 285.0 COG2074@1|root,COG2074@2|Bacteria,2GMUY@201174|Actinobacteria 201174|Actinobacteria G phosphotransferase activity, carboxyl group as acceptor - - - - - - - - - - - - AAA_33,SKI DYD2_k127_5046594_5 69395.JQLZ01000003_gene495 0.0003691 48.0 COG3237@1|root,COG3237@2|Bacteria,1NGW6@1224|Proteobacteria 1224|Proteobacteria S Belongs to the UPF0337 (CsbD) family - - - - - - - - - - - - CsbD DYD2_k127_5046594_3 1246995.AFR_20070 1.946e-08 62.0 2DMSR@1|root,32TF3@2|Bacteria,2IR08@201174|Actinobacteria,4DEUJ@85008|Micromonosporales 201174|Actinobacteria S Putative Actinobacterial Holin-X, holin superfamily III - - - - - - - - - - - - Phage_holin_3_6 DYD2_k127_5046594_1 886293.Sinac_0940 2.311e-211 672.0 COG2234@1|root,COG2234@2|Bacteria,2IZHS@203682|Planctomycetes 203682|Planctomycetes S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 DYD2_k127_5046594_0 234267.Acid_2399 3.482e-277 875.0 COG0550@1|root,COG0551@1|root,COG0550@2|Bacteria,COG0551@2|Bacteria,3Y343@57723|Acidobacteria 57723|Acidobacteria L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone topA - 5.99.1.2 ko:K03168 - - - - ko00000,ko01000,ko03032,ko03400 - - - Topoisom_bac,Toprim,zf-C4_Topoisom DYD2_k127_5046594_4 526224.Bmur_0482 1.262e-07 57.0 2DFN7@1|root,2ZSE0@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5046594_2 204669.Acid345_3341 6.069e-57 206.0 COG0322@1|root,COG0758@1|root,COG0322@2|Bacteria,COG0758@2|Bacteria,3Y42M@57723|Acidobacteria,2JI6N@204432|Acidobacteriia 204432|Acidobacteriia LU DNA protecting protein DprA - - - ko:K04096 - - - - ko00000 - - - DNA_processg_A DYD2_k127_504932_2 1280944.HY17_01045 2.994e-15 78.0 2B6ZF@1|root,31ZZQ@2|Bacteria,1R56K@1224|Proteobacteria,2U4J5@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_504932_1 319003.Bra1253DRAFT_06126 1.426e-20 98.0 2E91E@1|root,333AQ@2|Bacteria,1N9NY@1224|Proteobacteria,2UHXH@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_504932_0 935557.ATYB01000010_gene306 1.177e-193 623.0 COG0419@1|root,COG0419@2|Bacteria,1R5QS@1224|Proteobacteria,2U286@28211|Alphaproteobacteria,4B8U2@82115|Rhizobiaceae 28211|Alphaproteobacteria L Protein of unknown function (DUF3732) - - - - - - - - - - - - DUF3732 DYD2_k127_5061438_3 1519439.JPJG01000066_gene2408 3.735e-09 58.0 COG1947@1|root,COG1947@2|Bacteria,1TPXV@1239|Firmicutes,24898@186801|Clostridia,2N77Q@216572|Oscillospiraceae 186801|Clostridia I Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol ispE - 2.7.1.148 ko:K00919 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05634 RC00002,RC01439 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD2_k127_5061438_0 251221.35212931 9.141e-17 89.0 COG2340@1|root,COG2340@2|Bacteria,1G6DK@1117|Cyanobacteria 1117|Cyanobacteria S Cysteine-rich secretory protein family - - - - - - - - - - - - CAP DYD2_k127_5061438_1 1183438.GKIL_3942 8.507e-15 76.0 COG1595@1|root,COG1595@2|Bacteria 2|Bacteria K DNA-templated transcription, initiation - - - ko:K02405 ko02020,ko02025,ko02026,ko02040,ko05111,map02020,map02025,map02026,map02040,map05111 - - - ko00000,ko00001,ko02035,ko03021 - - - Sigma70_ECF DYD2_k127_5061438_2 1265490.JHVY01000034_gene972 1.439e-11 73.0 COG0741@1|root,COG1388@1|root,COG0741@2|Bacteria,COG1388@2|Bacteria,1MWKE@1224|Proteobacteria,1RMFZ@1236|Gammaproteobacteria 1236|Gammaproteobacteria M COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) mltD - - ko:K08307 - - - - ko00000,ko01000,ko01011 - - - LysM,MLTD_N,SLT DYD2_k127_508239_0 639030.JHVA01000001_gene91 6.412e-32 132.0 COG2006@1|root,COG2006@2|Bacteria,3Y7N1@57723|Acidobacteria,2JNKP@204432|Acidobacteriia 204432|Acidobacteriia S Carbohydrate family 9 binding domain-like - - - - - - - - - - - - CBM9_1 DYD2_k127_5088325_0 204669.Acid345_0995 1.861e-120 396.0 COG3191@1|root,COG3191@2|Bacteria,3Y699@57723|Acidobacteria 57723|Acidobacteria M Peptidase family S58 - - 3.4.11.19 ko:K01266 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S58 DYD2_k127_5088325_2 667014.Thein_2204 7.63e-63 228.0 28I4Y@1|root,2Z88D@2|Bacteria,2GI90@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria - - - - - - - - - - - - - - - DYD2_k127_5088325_1 1267535.KB906767_gene340 1.771e-108 361.0 COG5368@1|root,COG5368@2|Bacteria,3Y2MM@57723|Acidobacteria,2JI52@204432|Acidobacteriia 204432|Acidobacteriia S Putative glucoamylase - - - - - - - - - - - - Glycoamylase DYD2_k127_5091641_2 1396141.BATP01000023_gene697 1.657e-06 51.0 COG1595@1|root,COG1595@2|Bacteria,46W3W@74201|Verrucomicrobia 74201|Verrucomicrobia K ECF sigma factor - - - - - - - - - - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_5091641_1 204669.Acid345_3526 2.769e-60 224.0 COG0250@1|root,COG0250@2|Bacteria,3Y3I1@57723|Acidobacteria,2JHYX@204432|Acidobacteriia 204432|Acidobacteriia K Participates in transcription elongation, termination and antitermination - - - - - - - - - - - - - DYD2_k127_5091641_0 234267.Acid_5882 3.396e-86 297.0 COG1629@1|root,COG4771@2|Bacteria,3Y3HA@57723|Acidobacteria 57723|Acidobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_509310_2 42256.RradSPS_2806 3.649e-20 96.0 COG0204@1|root,COG1022@1|root,COG0204@2|Bacteria,COG1022@2|Bacteria,2GIXQ@201174|Actinobacteria 201174|Actinobacteria I AMP-dependent synthetase and ligase - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding DYD2_k127_509310_0 530564.Psta_4370 1.814e-178 571.0 COG0469@1|root,COG0469@2|Bacteria,2IY60@203682|Planctomycetes 203682|Planctomycetes G Belongs to the pyruvate kinase family - - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C DYD2_k127_509310_1 483219.LILAB_06150 1.071e-35 136.0 COG1502@1|root,COG1502@2|Bacteria,1MWUW@1224|Proteobacteria,42PV9@68525|delta/epsilon subdivisions,2WKF2@28221|Deltaproteobacteria,2YWP2@29|Myxococcales 28221|Deltaproteobacteria I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol clsA - - ko:K06131 ko00564,ko01100,map00564,map01100 - R07390 RC00017 ko00000,ko00001,ko01000 - - - PLDc_2,PLDc_N DYD2_k127_5095388_3 309799.DICTH_1028 2.894e-28 123.0 COG0204@1|root,COG0204@2|Bacteria 2|Bacteria I Acyl-transferase plsC - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase DYD2_k127_5095388_0 309801.trd_0178 8.263e-82 279.0 COG0483@1|root,COG0483@2|Bacteria,2G6JD@200795|Chloroflexi,27Y5G@189775|Thermomicrobia 189775|Thermomicrobia G Inositol monophosphatase family - - 3.1.3.25 ko:K01092 ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070 M00131 R01185,R01186,R01187 RC00078 ko00000,ko00001,ko00002,ko01000 - - - Inositol_P DYD2_k127_5095388_2 1089547.KB913013_gene1771 7.044e-47 181.0 COG0627@1|root,COG0627@2|Bacteria,4NE7D@976|Bacteroidetes,47KC0@768503|Cytophagia 976|Bacteroidetes S esterase - - - - - - - - - - - - Esterase DYD2_k127_5095388_1 545693.BMQ_1615 9.679e-52 184.0 COG2987@1|root,COG2987@2|Bacteria,1TPZ9@1239|Firmicutes,4H9NH@91061|Bacilli,1ZCMM@1386|Bacillus 91061|Bacilli E Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate hutU - 4.2.1.49 ko:K01712 ko00340,ko01100,map00340,map01100 M00045 R02914 RC00804 ko00000,ko00001,ko00002,ko01000 - - - Urocanase,Urocanase_C,Urocanase_N DYD2_k127_5099312_0 118168.MC7420_7619 6.589e-08 58.0 COG5635@1|root,COG5635@2|Bacteria,1G3GI@1117|Cyanobacteria,1H8II@1150|Oscillatoriales 2|Bacteria CT Ntpase (Nacht family) - - - - - - - - - - - - FGE-sulfatase,NACHT,TIR_2 DYD2_k127_5100122_3 867845.KI911784_gene3117 1.309e-07 60.0 COG1429@1|root,COG1429@2|Bacteria 2|Bacteria H ligase activity, forming nitrogen-metal bonds bchH - 6.6.1.1,6.6.1.2 ko:K02230,ko:K03403 ko00860,ko01100,ko01110,map00860,map01100,map01110 - R03877,R05227 RC01012,RC02000 ko00000,ko00001,ko01000 - - - CobN-Mg_chel,DUF3479 DYD2_k127_5100122_2 383372.Rcas_0879 5.394e-48 174.0 COG0614@1|root,COG0614@2|Bacteria,2GB40@200795|Chloroflexi,377VK@32061|Chloroflexia 32061|Chloroflexia P PD-(D/E)XK nuclease superfamily - - - - - - - - - - - - PDDEXK_3 DYD2_k127_5100122_0 324602.Caur_3151 2.234e-166 541.0 COG1429@1|root,COG1429@2|Bacteria,2GAMU@200795|Chloroflexi,376SM@32061|Chloroflexia 32061|Chloroflexia H TIGRFAM magnesium chelatase, H subunit - - 6.6.1.1 ko:K03403 ko00860,ko01100,ko01110,map00860,map01100,map01110 - R03877 RC01012 ko00000,ko00001,ko01000 - - - CobN-Mg_chel,DUF3479 DYD2_k127_5100122_1 323259.Mhun_0291 1.066e-129 439.0 COG1239@1|root,arCOG00438@2157|Archaea,2XUP4@28890|Euryarchaeota,2N9BN@224756|Methanomicrobia 224756|Methanomicrobia H AAA domain (dynein-related subfamily) - - 6.6.1.1 ko:K03404,ko:K03405 ko00860,ko01100,ko01110,map00860,map01100,map01110 - R03877 RC01012 ko00000,ko00001,ko01000 - - - AAA_5,Mg_chelatase,VWA_2 DYD2_k127_510162_1 234267.Acid_6499 1.419e-123 415.0 COG0006@1|root,COG0006@2|Bacteria,3Y36W@57723|Acidobacteria 57723|Acidobacteria E peptidase M24B X-Pro dipeptidase aminopeptidase domain protein - - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - AMP_N,Peptidase_M24 DYD2_k127_510162_3 324602.Caur_3470 1.728e-37 147.0 COG3170@1|root,COG3427@1|root,COG3170@2|Bacteria,COG3427@2|Bacteria,2G6U6@200795|Chloroflexi,376AP@32061|Chloroflexia 32061|Chloroflexia NU PFAM carbon monoxide dehydrogenase subunit G - - - ko:K09386 - - - - ko00000 - - - COXG DYD2_k127_510162_2 1382306.JNIM01000001_gene2693 2.995e-88 299.0 COG1319@1|root,COG1319@2|Bacteria,2G60Y@200795|Chloroflexi 200795|Chloroflexi C CO dehydrogenase flavoprotein domain protein - - 1.2.5.3 ko:K03519 - - R11168 RC02800 ko00000,ko01000 - - - CO_deh_flav_C,FAD_binding_5 DYD2_k127_510162_0 234267.Acid_2226 1.176e-196 627.0 COG1529@1|root,COG1529@2|Bacteria,3Y6BF@57723|Acidobacteria 57723|Acidobacteria C aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - 1.2.5.3 ko:K03520 - - R11168 RC02800 ko00000,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_510162_4 234267.Acid_2559 9.229e-06 49.0 COG0786@1|root,COG0786@2|Bacteria 2|Bacteria P glutamate:sodium symporter activity gltS GO:0003333,GO:0003674,GO:0005215,GO:0005283,GO:0005310,GO:0005342,GO:0005343,GO:0005416,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006835,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015077,GO:0015081,GO:0015171,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015370,GO:0015501,GO:0015672,GO:0015711,GO:0015849,GO:0016020,GO:0017153,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0044464,GO:0046873,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1903825,GO:1905039 - ko:K03312 - - - - ko00000,ko02000 2.A.27 - iIT341.HP1506,iPC815.YPO0035,iZ_1308.Z5081 Glt_symporter DYD2_k127_51074_1 382464.ABSI01000011_gene2813 4.002e-71 255.0 COG2972@1|root,COG2972@2|Bacteria,46TY3@74201|Verrucomicrobia,2IVUC@203494|Verrucomicrobiae 203494|Verrucomicrobiae T Histidine kinase - - - - - - - - - - - - His_kinase DYD2_k127_51074_5 509190.Cseg_1319 3.987e-22 100.0 2E80S@1|root,332EZ@2|Bacteria,1NB9X@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_51074_2 1123234.AUKI01000019_gene578 8.381e-64 224.0 28IPG@1|root,2Z8PF@2|Bacteria,4NP42@976|Bacteroidetes,1I1TB@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_51074_3 1107311.Q767_09430 3.048e-59 227.0 2DEZ8@1|root,2ZPV2@2|Bacteria,4PAGR@976|Bacteroidetes,1IDGW@117743|Flavobacteriia,2NYDT@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_51074_4 309807.SRU_2417 1.021e-58 225.0 COG3921@1|root,COG3921@2|Bacteria,4NN2M@976|Bacteroidetes 976|Bacteroidetes S Protein conserved in bacteria - - - - - - - - - - - - - DYD2_k127_51074_0 1245469.S58_36280 2.332e-172 554.0 2EPJD@1|root,33H61@2|Bacteria,1P9VX@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_5107448_0 1499967.BAYZ01000009_gene5383 4.027e-96 330.0 COG1653@1|root,COG1653@2|Bacteria,2NP9E@2323|unclassified Bacteria 2|Bacteria G Bacterial extracellular solute-binding protein - - - ko:K02027 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - SBP_bac_1,SBP_bac_8 DYD2_k127_5107448_1 1379270.AUXF01000002_gene1556 4.269e-20 101.0 COG0778@1|root,COG0778@2|Bacteria 2|Bacteria C coenzyme F420-1:gamma-L-glutamate ligase activity moeY - - - - - - - - - - - Nitroreductase,ThiF DYD2_k127_5111720_4 1267535.KB906767_gene4685 8.267e-14 75.0 COG1305@1|root,COG1305@2|Bacteria,3Y2TK@57723|Acidobacteria,2JHX7@204432|Acidobacteriia 204432|Acidobacteriia E Domain of Unknown Function with PDB structure (DUF3857) - - - - - - - - - - - - DUF3857,Transglut_core DYD2_k127_5111720_0 316274.Haur_2944 3.075e-169 538.0 COG1830@1|root,COG1830@2|Bacteria,2G8VI@200795|Chloroflexi 200795|Chloroflexi G DeoC/LacD family aldolase - - 4.1.2.13 ko:K11645 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - DeoC DYD2_k127_5111720_1 1121930.AQXG01000001_gene1318 2.055e-42 163.0 COG1595@1|root,COG1595@2|Bacteria,4NMIY@976|Bacteroidetes,1IS9P@117747|Sphingobacteriia 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4,Sigma70_r4_2 DYD2_k127_5111720_3 196162.Noca_4536 2.754e-18 94.0 COG5343@1|root,COG5343@2|Bacteria,2I8NI@201174|Actinobacteria,4DQMV@85009|Propionibacteriales 201174|Actinobacteria S Anti-sigma-K factor rskA rskA - - - - - - - - - - - RskA,zf-HC2 DYD2_k127_5111720_2 932678.THERU_02135 1.355e-37 147.0 COG2346@1|root,COG2346@2|Bacteria,2G5AF@200783|Aquificae 200783|Aquificae S Bacterial-like globin - - - ko:K06886 - - - - ko00000 - - - Bac_globin DYD2_k127_5118322_2 1267534.KB906761_gene1228 1.655e-18 91.0 COG4932@1|root,COG4932@2|Bacteria,3Y9AV@57723|Acidobacteria,2JP0F@204432|Acidobacteriia 204432|Acidobacteriia M Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD2_k127_5118322_1 1128421.JAGA01000003_gene3541 6.603e-32 140.0 COG1649@1|root,COG3391@1|root,COG1649@2|Bacteria,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity MA20_20600 - 1.14.17.3,2.7.11.1 ko:K00504,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - GHL10,NHL,Pkinase,SGL DYD2_k127_5118322_0 204669.Acid345_4190 2.211e-64 251.0 COG1629@1|root,COG4771@2|Bacteria,3Y3P9@57723|Acidobacteria,2JHUB@204432|Acidobacteriia 204432|Acidobacteriia P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_5128273_0 243231.GSU1252 1.352e-36 151.0 COG2132@1|root,COG2132@2|Bacteria,1N9H3@1224|Proteobacteria 1224|Proteobacteria Q Multicopper oxidase - - 1.16.3.3 ko:K22349 - - - - ko00000,ko01000 - - - - DYD2_k127_513159_0 1191523.MROS_1910 1.427e-79 274.0 COG0274@1|root,COG0274@2|Bacteria 2|Bacteria F deoxyribose-phosphate aldolase activity deoC GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 2.7.1.15,4.1.2.4,5.4.2.8,5.4.3.3 ko:K00852,ko:K01619,ko:K01840,ko:K01844 ko00030,ko00051,ko00310,ko00520,ko01100,ko01110,ko01130,map00030,map00051,map00310,map00520,map01100,map01110,map01130 M00114 R01051,R01066,R01818,R02750,R02852,R03275 RC00002,RC00017,RC00408,RC00436,RC00437,RC00719 ko00000,ko00001,ko00002,ko01000 - - iSB619.SA_RS00835,iYO844.BSU39420 DeoC,Lys-AminoMut_A DYD2_k127_513159_1 234267.Acid_2204 2.061e-43 168.0 COG0698@1|root,COG0698@2|Bacteria 2|Bacteria G galactose-6-phosphate isomerase activity upp - 2.4.2.9,5.3.1.6 ko:K00761,ko:K01808 ko00030,ko00051,ko00240,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00240,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R00966,R01056,R09030 RC00063,RC00376,RC00434 ko00000,ko00001,ko00002,ko01000 - - - LacAB_rpiB,UPRTase DYD2_k127_513159_2 1121920.AUAU01000002_gene2107 8.206e-13 70.0 COG0737@1|root,COG0737@2|Bacteria 2|Bacteria F nucleotide catabolic process - - 3.1.3.5 ko:K01081 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - Metallophos DYD2_k127_5133447_0 671143.DAMO_2651 1.346e-199 632.0 COG0021@1|root,COG0021@2|Bacteria,2NS3T@2323|unclassified Bacteria 2|Bacteria G Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate tkt - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C,Transketolase_N DYD2_k127_5133447_1 266117.Rxyl_1675 3.163e-126 424.0 COG1070@1|root,COG1070@2|Bacteria,2IAKI@201174|Actinobacteria,4CU2I@84995|Rubrobacteria 84995|Rubrobacteria G Belongs to the FGGY kinase family - - 2.7.1.12 ko:K00851 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200 - R01737 RC00002,RC00017 ko00000,ko00001,ko01000 - - - FGGY_C,FGGY_N DYD2_k127_5133447_2 204669.Acid345_2517 1.1e-62 223.0 COG3809@1|root,COG3809@2|Bacteria,3Y803@57723|Acidobacteria 57723|Acidobacteria S Transcription factor zinc-finger - - - - - - - - - - - - DZR,zf-TFIIB DYD2_k127_5133447_3 215803.DB30_2740 1.009e-42 160.0 COG0605@1|root,COG0605@2|Bacteria,1R4Z3@1224|Proteobacteria,42QV7@68525|delta/epsilon subdivisions,2WMPC@28221|Deltaproteobacteria,2YVDJ@29|Myxococcales 28221|Deltaproteobacteria C Iron/manganese superoxide dismutases, C-terminal domain sodA - 1.15.1.1 ko:K04564 ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016 - - - ko00000,ko00001,ko01000 - - - Sod_Fe_C,Sod_Fe_N DYD2_k127_5136538_0 96561.Dole_3169 3.939e-108 367.0 COG2252@1|root,COG2252@2|Bacteria,1MUV0@1224|Proteobacteria,42MAE@68525|delta/epsilon subdivisions,2WKFF@28221|Deltaproteobacteria,2MKCJ@213118|Desulfobacterales 28221|Deltaproteobacteria S Permease family pbuG - - ko:K06901 - - - - ko00000,ko02000 2.A.1.40 - - Xan_ur_permease DYD2_k127_5136538_1 768670.Calni_0847 1.137e-39 167.0 COG2319@1|root,COG4249@1|root,COG2319@2|Bacteria,COG4249@2|Bacteria,2GG9I@200930|Deferribacteres 200930|Deferribacteres G peptidase C14 caspase catalytic subunit p20 - - - - - - - - - - - - Peptidase_C14,WD40 DYD2_k127_5138654_0 469383.Cwoe_1058 5.358e-111 369.0 COG0044@1|root,COG0044@2|Bacteria,2GKEC@201174|Actinobacteria,4CRXW@84995|Rubrobacteria 84995|Rubrobacteria F PFAM amidohydrolase - - 3.5.2.2,3.5.2.3 ko:K01464,ko:K01465 ko00240,ko00410,ko00770,ko00983,ko01100,map00240,map00410,map00770,map00983,map01100 M00046,M00051 R01993,R02269,R03055,R08227 RC00632,RC00680 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Amidohydro_1 DYD2_k127_5138654_2 487521.OCU_15350 1.767e-07 62.0 COG0346@1|root,COG0346@2|Bacteria,2GW68@201174|Actinobacteria,23D7F@1762|Mycobacteriaceae 201174|Actinobacteria E Glyoxalase-like domain - - - - - - - - - - - - Glyoxalase DYD2_k127_5138654_1 1366050.N234_12150 3.518e-11 73.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - - ko:K11210 - - - - ko00000,ko01000 - - - Glyoxalase DYD2_k127_5152826_1 497964.CfE428DRAFT_5035 5.557e-113 373.0 COG1012@1|root,COG1012@2|Bacteria,46UJM@74201|Verrucomicrobia 74201|Verrucomicrobia C Aldehyde dehydrogenase family - - - - - - - - - - - - Aldedh DYD2_k127_5152826_0 530564.Psta_4496 3.073e-144 466.0 COG1541@1|root,COG1541@2|Bacteria,2IWUR@203682|Planctomycetes 203682|Planctomycetes H Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) - - - - - - - - - - - - - DYD2_k127_5173295_3 743722.Sph21_3734 1.394e-09 62.0 COG0476@1|root,COG0607@1|root,COG0476@2|Bacteria,COG0607@2|Bacteria,4NFUD@976|Bacteroidetes,1IPBH@117747|Sphingobacteriia 976|Bacteroidetes H UBA THIF-type NAD FAD binding protein moeB - 2.7.7.80,2.8.1.11 ko:K21029,ko:K21147 ko04122,map04122 - R07459,R07461 RC00043 ko00000,ko00001,ko01000 - - - Rhodanese,ThiF DYD2_k127_5173295_2 76114.ebA2569 5.979e-38 147.0 COG4446@1|root,COG4446@2|Bacteria,1N31A@1224|Proteobacteria,2VV97@28216|Betaproteobacteria 28216|Betaproteobacteria S Protein of unknown function (DUF1499) - - - - - - - - - - - - DUF1499 DYD2_k127_5173295_0 1121861.KB899921_gene3047 7.21e-105 347.0 COG3638@1|root,COG3638@2|Bacteria,1MVE9@1224|Proteobacteria,2TRR3@28211|Alphaproteobacteria,2JQYT@204441|Rhodospirillales 204441|Rhodospirillales P Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system - - - - - - - - - - - - ABC_tran DYD2_k127_5173295_1 570967.JMLV01000002_gene1916 4.296e-69 244.0 COG3221@1|root,COG3221@2|Bacteria,1MXD8@1224|Proteobacteria,2TQMQ@28211|Alphaproteobacteria,2JR47@204441|Rhodospirillales 204441|Rhodospirillales P COG3221 ABC-type phosphate phosphonate transport system, periplasmic component - - - ko:K02044 ko02010,map02010 M00223 - - ko00000,ko00001,ko00002,ko02000 3.A.1.9 - - Phosphonate-bd DYD2_k127_5193323_2 216596.RL3040 1.724e-29 124.0 COG0725@1|root,COG0725@2|Bacteria,1RCHM@1224|Proteobacteria,2VGBX@28211|Alphaproteobacteria,4B8EK@82115|Rhizobiaceae 28211|Alphaproteobacteria P Bacterial extracellular solute-binding protein - - 5.3.3.7 ko:K02020,ko:K22003 ko00660,ko02010,map00660,map02010 M00189 R02244 RC00668 ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.8 - - SBP_bac_11 DYD2_k127_5193323_3 706587.Desti_5217 2.526e-28 115.0 2C1SS@1|root,32YN6@2|Bacteria,1NNFV@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_5193323_4 706587.Desti_5216 2.211e-27 113.0 2E90H@1|root,3339X@2|Bacteria,1NMSR@1224|Proteobacteria,42XCQ@68525|delta/epsilon subdivisions,2WSNY@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_5193323_0 748280.NH8B_0887 4.944e-91 303.0 COG5553@1|root,COG5553@2|Bacteria,1RD6A@1224|Proteobacteria 1224|Proteobacteria S of the double-stranded beta helix - - - - - - - - - - - - CDO_I DYD2_k127_5193323_1 318464.IO99_06635 1.733e-47 181.0 COG0500@1|root,COG2226@2|Bacteria,1UFKC@1239|Firmicutes,24H53@186801|Clostridia,36I5D@31979|Clostridiaceae 186801|Clostridia Q Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - - - - - - - - - - Ubie_methyltran DYD2_k127_5198182_1 32057.KB217478_gene4575 9.071e-18 86.0 COG4453@1|root,COG4453@2|Bacteria 2|Bacteria K Protein conserved in bacteria - - - - - - - - - - - - DUF1778 DYD2_k127_5198182_0 713587.THITH_05375 3.293e-51 186.0 COG0454@1|root,COG0454@2|Bacteria,1RHV9@1224|Proteobacteria,1S3D1@1236|Gammaproteobacteria,1WYA1@135613|Chromatiales 135613|Chromatiales K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_7 DYD2_k127_5198182_2 1415779.JOMH01000001_gene461 4.449e-10 60.0 COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1MW7X@1224|Proteobacteria,1S900@1236|Gammaproteobacteria,1XBP9@135614|Xanthomonadales 135614|Xanthomonadales L DDE superfamily endonuclease - - - - - - - - - - - - DDE_3,HTH_32 DYD2_k127_52054_0 518766.Rmar_1973 6.724e-105 346.0 COG1878@1|root,COG1878@2|Bacteria,4PIWM@976|Bacteroidetes,1FJPB@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes S Putative cyclase - GO:0003674,GO:0003824,GO:0004061,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 ko:K07130 ko00380,ko00630,ko01100,map00380,map00630,map01100 M00038 R00988,R01959,R04911 RC00263,RC00323 ko00000,ko00001,ko00002,ko01000 - - - Cyclase DYD2_k127_52054_1 1499686.BN1079_01619 1.755e-67 235.0 COG4149@1|root,COG4149@2|Bacteria,1MUXR@1224|Proteobacteria,1RRDV@1236|Gammaproteobacteria 1236|Gammaproteobacteria P ABC-type molybdate transport system, permease component modB GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - ko:K02018 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 3.A.1.8 - iECO103_1326.ECO103_0752 BPD_transp_1 DYD2_k127_52054_2 234267.Acid_5562 2.835e-22 100.0 COG4102@1|root,COG4102@2|Bacteria,3Y2YD@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD2_k127_5212178_3 102125.Xen7305DRAFT_00018710 1.144e-33 134.0 COG0110@1|root,COG0110@2|Bacteria,1G5D7@1117|Cyanobacteria,3VNK4@52604|Pleurocapsales 1117|Cyanobacteria S Hexapeptide repeat of succinyl-transferase - - - - - - - - - - - - Hexapep,Hexapep_2 DYD2_k127_5212178_0 113355.CM001775_gene168 1.059e-76 267.0 COG1216@1|root,COG1216@2|Bacteria,1G8YE@1117|Cyanobacteria 1117|Cyanobacteria S Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_5212178_4 864702.OsccyDRAFT_3069 2.486e-20 101.0 COG2242@1|root,COG2242@2|Bacteria,1G8N2@1117|Cyanobacteria,1HD6S@1150|Oscillatoriales 1117|Cyanobacteria H TIGRFAM methyltransferase FkbM family - - - - - - - - - - - - Methyltransf_21 DYD2_k127_5212178_2 1535287.JP74_22105 1.86e-37 153.0 COG0463@1|root,COG0463@2|Bacteria,1QF1N@1224|Proteobacteria,2U3U0@28211|Alphaproteobacteria 28211|Alphaproteobacteria M Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_5212178_1 65093.PCC7418_2791 1.751e-49 184.0 COG0463@1|root,COG0463@2|Bacteria,1GQBY@1117|Cyanobacteria 1117|Cyanobacteria M glycosyl transferase - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_5214223_2 644283.Micau_1972 5.504e-56 206.0 COG0145@1|root,COG0145@2|Bacteria,2GIYE@201174|Actinobacteria,4DGZR@85008|Micromonosporales 201174|Actinobacteria EQ COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit - - 3.5.2.14 ko:K01473 ko00330,ko01100,map00330,map01100 - R03187 RC00632 ko00000,ko00001,ko01000 - - - Hydant_A_N,Hydantoinase_A DYD2_k127_5214223_0 330084.JNYZ01000015_gene6069 1.338e-114 388.0 COG0146@1|root,COG0146@2|Bacteria,2HWA8@201174|Actinobacteria,4E0K0@85010|Pseudonocardiales 201174|Actinobacteria EQ Hydantoinase B/oxoprolinase - - 3.5.2.14 ko:K01474 ko00330,ko01100,map00330,map01100 - R03187 RC00632 ko00000,ko00001,ko01000 - - - Hydantoinase_B DYD2_k127_5214223_1 160799.PBOR_28255 1.38e-97 331.0 COG2355@1|root,COG2355@2|Bacteria,1TRNQ@1239|Firmicutes,4HEBU@91061|Bacilli,26QKV@186822|Paenibacillaceae 91061|Bacilli E Membrane dipeptidase (Peptidase family M19) - - 3.4.13.19 ko:K01273 - - - - ko00000,ko00537,ko01000,ko01002,ko04147 - - - Peptidase_M19 DYD2_k127_5221816_2 1173029.JH980292_gene2125 5.507e-10 70.0 COG5617@1|root,COG5617@2|Bacteria,1G6H7@1117|Cyanobacteria 1117|Cyanobacteria S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - PTPS_related DYD2_k127_5221816_0 204669.Acid345_1572 7.736e-55 204.0 COG1277@1|root,COG1277@2|Bacteria 2|Bacteria - - pilI - - - - - - - - - - - ABC2_membrane_2 DYD2_k127_5221816_1 204669.Acid345_1573 3.577e-35 147.0 COG0457@1|root,COG0457@2|Bacteria 204669.Acid345_1573|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_5221816_3 103690.17133525 7.796e-09 57.0 COG1131@1|root,COG1131@2|Bacteria,1G0UC@1117|Cyanobacteria,1HKHR@1161|Nostocales 1117|Cyanobacteria V ABC-type multidrug transport system ATPase component - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_5222376_1 1380394.JADL01000011_gene4064 1.049e-05 50.0 COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TSH9@28211|Alphaproteobacteria,2JPWP@204441|Rhodospirillales 204441|Rhodospirillales P ATPases associated with a variety of cellular activities - - - ko:K02049 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - ABC_tran DYD2_k127_5222376_0 478741.JAFS01000001_gene2075 1.959e-178 570.0 COG3177@1|root,COG3177@2|Bacteria 2|Bacteria D Filamentation induced by cAMP protein fic - - - - - - - - - - - - Fic,Penicillinase_R DYD2_k127_5224708_1 452637.Oter_4609 1.22e-206 660.0 COG1297@1|root,COG1297@2|Bacteria 2|Bacteria S iron-nicotianamine transmembrane transporter activity - - - - - - - - - - - - OPT DYD2_k127_5224708_0 861299.J421_1696 1.26e-214 692.0 COG2866@1|root,COG2866@2|Bacteria,1ZUNB@142182|Gemmatimonadetes 142182|Gemmatimonadetes E Zinc carboxypeptidase - - - - - - - - - - - - Peptidase_M14 DYD2_k127_5224708_2 321327.CYA_0213 2.931e-103 351.0 COG0661@1|root,COG0661@2|Bacteria,1GC9E@1117|Cyanobacteria,1H3X7@1129|Synechococcus 1117|Cyanobacteria S ABC1 family - - - - - - - - - - - - ABC1 DYD2_k127_5226525_1 941824.TCEL_00205 7.303e-95 321.0 COG0068@1|root,COG0068@2|Bacteria,1TQM7@1239|Firmicutes,2494A@186801|Clostridia,36EAU@31979|Clostridiaceae 186801|Clostridia O Belongs to the carbamoyltransferase HypF family hypF - - ko:K04656 - - - - ko00000 - - - Acylphosphatase,Sua5_yciO_yrdC,zf-HYPF DYD2_k127_5226525_0 204669.Acid345_0924 2.965e-96 320.0 COG0378@1|root,COG0378@2|Bacteria,3Y3AD@57723|Acidobacteria,2JJ75@204432|Acidobacteriia 204432|Acidobacteriia KO CobW/HypB/UreG, nucleotide-binding domain - - - ko:K04652 - - - - ko00000,ko03110 - - - cobW DYD2_k127_5226525_2 1267533.KB906737_gene1742 2.351e-32 129.0 COG0375@1|root,COG0375@2|Bacteria,3Y5WA@57723|Acidobacteria,2JK5V@204432|Acidobacteriia 204432|Acidobacteriia S Hydrogenase/urease nickel incorporation, metallochaperone, hypA - - - ko:K04651 - - - - ko00000,ko03110 - - - HypA DYD2_k127_5226525_3 234267.Acid_7166 8.031e-17 88.0 COG2353@1|root,COG2353@2|Bacteria 2|Bacteria O YceI-like domain - - - - - - - - - - - - YceI DYD2_k127_5231360_1 278963.ATWD01000001_gene2441 4.313e-47 175.0 COG2132@1|root,COG2132@2|Bacteria,3Y5PP@57723|Acidobacteria,2JK1U@204432|Acidobacteriia 204432|Acidobacteriia Q Multicopper oxidase - - 1.16.3.3 ko:K22348 - - - - ko00000,ko01000 - - - Cu-oxidase_2,Cu-oxidase_3 DYD2_k127_5231360_0 1340493.JNIF01000004_gene459 5.013e-97 336.0 COG1538@1|root,COG1538@2|Bacteria,3Y6KZ@57723|Acidobacteria 57723|Acidobacteria MU Outer membrane efflux protein - - - ko:K15725 - - - - ko00000,ko02000 1.B.17.2.2 - - OEP DYD2_k127_5236987_0 518766.Rmar_2028 6.73e-95 321.0 COG0457@1|root,COG3829@1|root,COG0457@2|Bacteria,COG3829@2|Bacteria,4PM5Y@976|Bacteroidetes,1FIME@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes K Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8,Sigma54_activat DYD2_k127_5237114_2 1286106.MPL1_05654 2.728e-83 280.0 COG0849@1|root,COG0849@2|Bacteria,1MUSR@1224|Proteobacteria,1RMXY@1236|Gammaproteobacteria,46048@72273|Thiotrichales 72273|Thiotrichales D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring ftsA - - ko:K03590 ko04112,map04112 - - - ko00000,ko00001,ko03036,ko04812 - - - FtsA,SHS2_FTSA DYD2_k127_5237114_0 1249627.D779_1241 1.158e-159 511.0 COG0206@1|root,COG0206@2|Bacteria,1MV2X@1224|Proteobacteria,1RPZS@1236|Gammaproteobacteria,1WXJ6@135613|Chromatiales 135613|Chromatiales D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity ftsZ - - ko:K03531 ko04112,map04112 - - - ko00000,ko00001,ko02048,ko03036,ko04812 - - - FtsZ_C,Tubulin DYD2_k127_5237114_1 1049564.TevJSym_aj00230 5.731e-152 484.0 COG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,1RQ72@1236|Gammaproteobacteria,1J54C@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria M Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis lpxC GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0008654,GO:0008759,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019637,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.5.1.108 ko:K02535 ko00540,ko01100,map00540,map01100 M00060 R04587 RC00166,RC00300 ko00000,ko00001,ko00002,ko01000,ko01005 - - iECS88_1305.ECS88_0100 LpxC DYD2_k127_5237114_3 472759.Nhal_0500 3.286e-60 211.0 COG0653@1|root,COG0653@2|Bacteria,1MUJZ@1224|Proteobacteria,1RM9M@1236|Gammaproteobacteria,1WWZC@135613|Chromatiales 135613|Chromatiales U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA - - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW DYD2_k127_5243995_1 1047013.AQSP01000109_gene2432 5.47e-26 114.0 COG5009@1|root,COG5009@2|Bacteria,2NS4K@2323|unclassified Bacteria 2|Bacteria M Transglycosylase mrcA GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0008955,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042546,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 iAF987.Gmet_0354 PCB_OB,Transgly,Transpeptidase DYD2_k127_5243995_0 1198114.AciX9_2892 8.857e-117 406.0 COG2199@1|root,COG2203@1|root,COG3437@1|root,COG2199@2|Bacteria,COG2203@2|Bacteria,COG3437@2|Bacteria,3Y9F7@57723|Acidobacteria 57723|Acidobacteria T HD domain - - - - - - - - - - - - GAF_2,GGDEF DYD2_k127_524866_1 204669.Acid345_1660 8.536e-32 144.0 COG1452@1|root,COG1452@2|Bacteria 2|Bacteria M lipopolysaccharide transport - - - ko:K09774 - - - - ko00000,ko02000 1.B.42.1 - - LptC,OstA DYD2_k127_524866_0 335543.Sfum_0725 7.483e-39 149.0 COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,42N67@68525|delta/epsilon subdivisions,2WPKC@28221|Deltaproteobacteria,2MRXH@213462|Syntrophobacterales 28221|Deltaproteobacteria V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin uppP - 3.6.1.27 ko:K06153 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - BacA DYD2_k127_5252477_2 720554.Clocl_2647 6.414e-06 57.0 COG5662@1|root,COG5662@2|Bacteria,1VKS6@1239|Firmicutes,24VD1@186801|Clostridia,3WM8H@541000|Ruminococcaceae 186801|Clostridia K Putative zinc-finger - - - - - - - - - - - - zf-HC2 DYD2_k127_5252477_1 234267.Acid_3141 7.734e-34 137.0 COG1595@1|root,COG1595@2|Bacteria,3Y5J6@57723|Acidobacteria 57723|Acidobacteria K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_5252477_0 765952.PUV_08150 7.931e-101 333.0 COG1233@1|root,COG1233@2|Bacteria 2|Bacteria Q all-trans-retinol 13,14-reductase activity pys - - - - - - - - - - - Amino_oxidase,NAD_binding_8 DYD2_k127_5253236_0 1379270.AUXF01000003_gene3550 0.0 1551.0 COG4447@1|root,COG4447@2|Bacteria 2|Bacteria S cellulose binding - - - - - - - - - - - - Sortilin-Vps10 DYD2_k127_5260518_0 204669.Acid345_2471 9.166e-120 395.0 COG1960@1|root,COG1960@2|Bacteria,3Y2NA@57723|Acidobacteria,2JII2@204432|Acidobacteriia 204432|Acidobacteriia I Acyl-CoA dehydrogenase, C-terminal domain - - 1.3.8.1 ko:K00248 ko00071,ko00280,ko00650,ko01100,ko01110,ko01120,ko01200,ko01212,map00071,map00280,map00650,map01100,map01110,map01120,map01200,map01212 - R01175,R01178,R02661,R03172,R04751 RC00052,RC00068,RC00076,RC00120,RC00148 ko00000,ko00001,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD2_k127_5260518_3 1121413.JMKT01000001_gene1686 1.182e-27 117.0 COG0399@1|root,COG0399@2|Bacteria,1N0QW@1224|Proteobacteria,42W70@68525|delta/epsilon subdivisions,2X245@28221|Deltaproteobacteria,2MFSC@213115|Desulfovibrionales 28221|Deltaproteobacteria M 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP DYD2_k127_5260518_4 1121413.JMKT01000001_gene1686 7.671e-05 46.0 COG0399@1|root,COG0399@2|Bacteria,1N0QW@1224|Proteobacteria,42W70@68525|delta/epsilon subdivisions,2X245@28221|Deltaproteobacteria,2MFSC@213115|Desulfovibrionales 28221|Deltaproteobacteria M 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP DYD2_k127_5260518_1 1121430.JMLG01000017_gene309 1.091e-54 204.0 COG0491@1|root,COG0491@2|Bacteria,1TQPX@1239|Firmicutes,24BDQ@186801|Clostridia,261Z4@186807|Peptococcaceae 186801|Clostridia S Zn-dependent hydrolase, glyoxylase - - - - - - - - - - - - Lactamase_B DYD2_k127_5260518_2 1340493.JNIF01000003_gene3264 3.126e-32 139.0 COG0265@1|root,COG0265@2|Bacteria,3Y4AJ@57723|Acidobacteria 57723|Acidobacteria O PDZ DHR GLGF domain protein - - - - - - - - - - - - PDZ_2 DYD2_k127_5261404_1 997346.HMPREF9374_0758 1.173e-87 306.0 COG2366@1|root,COG2366@2|Bacteria,1UFHA@1239|Firmicutes,4HACM@91061|Bacilli,27CTF@186824|Thermoactinomycetaceae 91061|Bacilli S Penicillin amidase acyII - 3.5.1.11 ko:K01434 ko00311,ko01130,map00311,map01130 - R02170 RC00166,RC00328 ko00000,ko00001,ko01000,ko01002 - - - Penicil_amidase DYD2_k127_5261404_2 926556.Echvi_1781 4.09e-79 284.0 COG0612@1|root,COG0612@2|Bacteria,4NEPT@976|Bacteroidetes,47M2G@768503|Cytophagia 976|Bacteroidetes S Peptidase M16 inactive domain - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_5261404_0 1356852.N008_09330 4.427e-96 332.0 COG0612@1|root,COG0612@2|Bacteria,4NE0K@976|Bacteroidetes,47TKT@768503|Cytophagia 976|Bacteroidetes S Insulinase (Peptidase family M16) - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_5261404_8 1379698.RBG1_1C00001G0758 1.496e-10 72.0 2ER9F@1|root,33IV2@2|Bacteria,2NRV9@2323|unclassified Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5261404_7 204669.Acid345_4653 6.011e-17 88.0 COG1238@1|root,COG1238@2|Bacteria,3Y52F@57723|Acidobacteria,2JJK2@204432|Acidobacteriia 204432|Acidobacteriia S PFAM SNARE associated Golgi protein - - - - - - - - - - - - SNARE_assoc DYD2_k127_5261404_6 484770.UFO1_1069 4.986e-18 92.0 COG1238@1|root,COG1238@2|Bacteria,1UJJC@1239|Firmicutes,4H4J7@909932|Negativicutes 909932|Negativicutes S PFAM SNARE associated protein - - - - - - - - - - - - SNARE_assoc DYD2_k127_5261404_4 273068.TTE1398 1.367e-41 164.0 COG2176@1|root,COG2176@2|Bacteria,1TPAG@1239|Firmicutes,248YB@186801|Clostridia,42FB8@68295|Thermoanaerobacterales 186801|Clostridia L Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity polC - 2.7.7.7 ko:K03763 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_a_NI,DNA_pol3_a_NII,DNA_pol3_alpha,HHH_6,PHP,RNase_T,tRNA_anti-codon DYD2_k127_5261404_3 1340493.JNIF01000003_gene4131 1.432e-58 208.0 COG0461@1|root,COG0461@2|Bacteria 2|Bacteria F orotate phosphoribosyltransferase activity pyrE - 2.4.2.10 ko:K00762 ko00240,ko01100,map00240,map01100 M00051 R01870 RC00611 ko00000,ko00001,ko00002,ko01000 - - - Pribosyltran DYD2_k127_5261404_5 1168059.KB899087_gene3370 1.358e-18 90.0 COG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,2TR57@28211|Alphaproteobacteria,3EYT9@335928|Xanthobacteraceae 28211|Alphaproteobacteria J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs truA GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 ko:K06173 - - - - ko00000,ko01000,ko03016 - - - PseudoU_synth_1 DYD2_k127_5275926_0 653733.Selin_1824 8.179e-92 328.0 COG1480@1|root,COG1480@2|Bacteria 2|Bacteria O 7TM receptor with intracellular HD hydrolase yqfF - - ko:K07037 - - - - ko00000 - - - 7TM-7TMR_HD,7TMR-HDED,HD DYD2_k127_5275926_1 1267534.KB906758_gene2423 2.044e-36 140.0 COG0537@1|root,COG0537@2|Bacteria,3Y4CN@57723|Acidobacteria,2JJ4P@204432|Acidobacteriia 204432|Acidobacteriia FG PFAM Histidine triad (HIT) protein - - 2.7.7.53 ko:K19710 ko00230,map00230 - R00126,R01618 RC00002,RC02753,RC02795 ko00000,ko00001,ko01000 - - - HIT DYD2_k127_5280942_0 383372.Rcas_1003 3.147e-207 651.0 COG0029@1|root,COG0029@2|Bacteria,2G5JM@200795|Chloroflexi,375AE@32061|Chloroflexia 32061|Chloroflexia H Catalyzes the oxidation of L-aspartate to iminoaspartate - - 1.4.3.16 ko:K00278 ko00250,ko00760,ko01100,map00250,map00760,map01100 M00115 R00357,R00481 RC00006,RC02566 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C DYD2_k127_5280942_2 926560.KE387023_gene3852 3.232e-169 537.0 COG0379@1|root,COG0379@2|Bacteria,1WIXY@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus H Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate nadA - 2.5.1.72 ko:K03517 ko00760,ko01100,map00760,map01100 M00115 R04292 RC01119 ko00000,ko00001,ko00002,ko01000 - - - NadA DYD2_k127_5280942_3 357808.RoseRS_0439 2.48e-108 358.0 COG0157@1|root,COG0157@2|Bacteria,2G6GJ@200795|Chloroflexi,375H1@32061|Chloroflexia 32061|Chloroflexia H Belongs to the NadC ModD family - - 2.4.2.19 ko:K00767 ko00760,ko01100,map00760,map01100 M00115 R03348 RC02877 ko00000,ko00001,ko00002,ko01000 - - - QRPTase_C,QRPTase_N DYD2_k127_5280942_1 469383.Cwoe_1088 4.676e-206 648.0 COG0372@1|root,COG0372@2|Bacteria,2GJ7E@201174|Actinobacteria,4CPID@84995|Rubrobacteria 84995|Rubrobacteria C Belongs to the citrate synthase family - - 2.3.3.1 ko:K01647 ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00740 R00351 RC00004,RC00067 br01601,ko00000,ko00001,ko00002,ko01000 - - - Citrate_synt DYD2_k127_5280942_4 32057.KB217478_gene1996 7.569e-23 98.0 COG3514@1|root,COG3514@2|Bacteria,1G7ND@1117|Cyanobacteria 1117|Cyanobacteria S SPTR CopG domain protein DNA-binding domain protein - - - - - - - - - - - - BrnA_antitoxin DYD2_k127_528208_1 886293.Sinac_7078 1.555e-39 165.0 COG0644@1|root,COG0644@2|Bacteria,2IZDK@203682|Planctomycetes 203682|Planctomycetes C FAD binding domain - - 1.3.99.38 ko:K21401 - - - - ko00000,ko01000 - - - FAD_binding_3 DYD2_k127_528208_2 443144.GM21_3234 1.233e-37 151.0 COG0500@1|root,COG2226@2|Bacteria,1QYSR@1224|Proteobacteria 1224|Proteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_23,Methyltransf_25 DYD2_k127_528208_0 204669.Acid345_2370 3.123e-132 429.0 COG0304@1|root,COG0304@2|Bacteria,3Y43C@57723|Acidobacteria,2JMFI@204432|Acidobacteriia 204432|Acidobacteriia IQ Beta-ketoacyl synthase, C-terminal domain - - 2.3.1.179 ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt DYD2_k127_5288892_0 880073.Calab_0998 2.547e-99 325.0 COG1506@1|root,COG1506@2|Bacteria,2NQR2@2323|unclassified Bacteria 2|Bacteria E Alpha/beta hydrolase family ptpA - - - - - - - - - - - Peptidase_S9 DYD2_k127_5288892_1 1123242.JH636434_gene3868 2.193e-86 303.0 COG1520@1|root,COG1520@2|Bacteria,2IYRB@203682|Planctomycetes 1123242.JH636434_gene3868|- S beta-propeller repeat - - - - - - - - - - - - - DYD2_k127_5288892_2 317936.Nos7107_1719 6.166e-55 202.0 2ERTE@1|root,33JCN@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5288892_3 237368.SCABRO_02216 3.301e-06 55.0 2EKZQ@1|root,33EP6@2|Bacteria 2|Bacteria S Coenzyme PQQ synthesis protein D (PqqD) - - - - - - - - - - - - PqqD DYD2_k127_5291477_1 1128421.JAGA01000003_gene2871 2.33e-168 533.0 COG5557@1|root,COG5557@2|Bacteria,2NNNQ@2323|unclassified Bacteria 2|Bacteria C Polysulphide reductase, NrfD nrfD - - ko:K00185 - - - - ko00000 5.A.3 - - DUF3341,NrfD DYD2_k127_5291477_0 1128421.JAGA01000003_gene2870 0.0 1106.0 COG0243@1|root,COG0437@1|root,COG0243@2|Bacteria,COG0437@2|Bacteria,2NNV6@2323|unclassified Bacteria 2|Bacteria C 4Fe-4S dicluster domain hmeA - - ko:K00184 - - - - ko00000 5.A.3 - - Fer4_7,Molydop_binding DYD2_k127_5291477_3 234267.Acid_0489 6.733e-84 283.0 COG3880@1|root,COG3880@2|Bacteria,3Y2KG@57723|Acidobacteria 57723|Acidobacteria S Cytochrome c7 and related cytochrome c - - - - - - - - - - - - Cytochrome_C7 DYD2_k127_5291477_7 42256.RradSPS_3047 1.161e-61 225.0 COG1940@1|root,COG1940@2|Bacteria,2GJCQ@201174|Actinobacteria,4CPVZ@84995|Rubrobacteria 84995|Rubrobacteria GK ROK family - - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - ROK DYD2_k127_5291477_10 1210884.HG799467_gene13308 3.394e-25 111.0 COG0589@1|root,COG0589@2|Bacteria,2J0XB@203682|Planctomycetes 203682|Planctomycetes T Universal stress protein - - - - - - - - - - - - Usp DYD2_k127_5291477_15 1476583.DEIPH_ctg020orf0001 4.924e-07 60.0 COG0586@1|root,COG0586@2|Bacteria,1WKEG@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S SNARE associated Golgi protein - - - ko:K03975 - - - - ko00000 - - - SNARE_assoc DYD2_k127_5291477_4 204669.Acid345_2431 7.105e-83 286.0 COG2605@1|root,COG2605@2|Bacteria,3Y56A@57723|Acidobacteria,2JP24@204432|Acidobacteriia 204432|Acidobacteriia S GHMP kinases C terminal - - 2.7.1.168 ko:K07031 ko00540,map00540 - R09770 RC00002,RC00078 ko00000,ko00001,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD2_k127_5291477_12 1394178.AWOO02000012_gene3828 9.875e-17 87.0 COG1051@1|root,COG1051@2|Bacteria,2IIJJ@201174|Actinobacteria,4EJRA@85012|Streptosporangiales 201174|Actinobacteria F NUDIX domain - - - - - - - - - - - - NUDIX DYD2_k127_5291477_8 234267.Acid_7287 1.451e-45 172.0 COG0461@1|root,COG0461@2|Bacteria,3Y6JQ@57723|Acidobacteria 57723|Acidobacteria F Phosphoribosyl transferase domain - - 2.4.2.10 ko:K00762 ko00240,ko01100,map00240,map01100 M00051 R01870 RC00611 ko00000,ko00001,ko00002,ko01000 - - - Pribosyltran DYD2_k127_5291477_13 497964.CfE428DRAFT_0182 1.592e-15 79.0 2DR98@1|root,33ARN@2|Bacteria,46TBY@74201|Verrucomicrobia 74201|Verrucomicrobia S Putative addiction module component - - - - - - - - - - - - Unstab_antitox DYD2_k127_5291477_5 755731.Clo1100_0266 1.298e-73 253.0 COG0353@1|root,COG0353@2|Bacteria,1TR87@1239|Firmicutes,2487H@186801|Clostridia,36EFC@31979|Clostridiaceae 186801|Clostridia L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO recR - - ko:K06187 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - HHH,RecR,Toprim_4 DYD2_k127_5291477_11 204669.Acid345_1974 4.66e-24 105.0 COG0718@1|root,COG0718@2|Bacteria,3Y5CB@57723|Acidobacteria,2JJRM@204432|Acidobacteriia 204432|Acidobacteriia L Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection - - - ko:K09747 - - - - ko00000 - - - YbaB_DNA_bd DYD2_k127_5291477_9 649638.Trad_1357 3.768e-28 123.0 COG0400@1|root,COG0400@2|Bacteria 2|Bacteria S palmitoyl-(protein) hydrolase activity - - - ko:K06999 - - - - ko00000 - - - PE-PPE,VKG_Carbox DYD2_k127_5291477_6 1173020.Cha6605_2716 1.975e-66 233.0 COG3738@1|root,COG3738@2|Bacteria 2|Bacteria S Domain of unknown function (DUF1287) yijF - - ko:K09974 - - - - ko00000 - - - DUF1287 DYD2_k127_5291477_2 234267.Acid_5207 5.236e-159 511.0 COG1228@1|root,COG1228@2|Bacteria,3Y3BK@57723|Acidobacteria 57723|Acidobacteria Q Amidohydrolase family - - 3.5.2.7 ko:K01468 ko00340,ko01100,map00340,map01100 M00045 R02288 RC00683 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 DYD2_k127_5291477_16 1123508.JH636440_gene2572 4.884e-06 52.0 COG4319@1|root,COG4319@2|Bacteria,2J3B0@203682|Planctomycetes 203682|Planctomycetes S Calcium/calmodulin dependent protein kinase II association domain - - - - - - - - - - - - SnoaL_3 DYD2_k127_5304963_4 1379698.RBG1_1C00001G1062 2.156e-24 107.0 COG1007@1|root,COG1007@2|Bacteria,2NNMY@2323|unclassified Bacteria 2|Bacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoN-1 - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M DYD2_k127_5304963_5 1200567.JNKD01000017_gene1111 7.877e-10 70.0 COG0519@1|root,COG0519@2|Bacteria,1MU2A@1224|Proteobacteria,1RP81@1236|Gammaproteobacteria,1Y3IC@135624|Aeromonadales 135624|Aeromonadales F Catalyzes the synthesis of GMP from XMP guaA - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase,GMP_synt_C,NAD_synthase DYD2_k127_5304963_2 1499967.BAYZ01000060_gene6005 5.688e-59 212.0 COG0122@1|root,COG0122@2|Bacteria 2|Bacteria L 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase alkA - 3.2.2.21 ko:K01247 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD DYD2_k127_5304963_3 215803.DB30_2020 7.31e-35 139.0 COG3034@1|root,COG3034@2|Bacteria 2|Bacteria M peptidoglycan biosynthetic process IV02_27405 - - - - - - - - - - - YkuD DYD2_k127_5304963_0 1121957.ATVL01000009_gene1201 1.543e-149 482.0 COG2170@1|root,COG2170@2|Bacteria,4NFFP@976|Bacteroidetes,47KG2@768503|Cytophagia 976|Bacteroidetes S ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity ybdK - - ko:K06048 - - - - ko00000,ko01000 - - - GCS2 DYD2_k127_5304963_1 383372.Rcas_1801 5.178e-109 368.0 COG2308@1|root,COG2308@2|Bacteria,2G7ZB@200795|Chloroflexi,3754D@32061|Chloroflexia 32061|Chloroflexia S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - CP_ATPgrasp_2 DYD2_k127_5306575_2 644966.Tmar_0853 2.062e-19 89.0 COG0809@1|root,COG0809@2|Bacteria,1TPKD@1239|Firmicutes,247NT@186801|Clostridia,3WCFH@538999|Clostridiales incertae sedis 186801|Clostridia J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA - 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth DYD2_k127_5306575_3 204773.HEAR3288 1.222e-16 91.0 COG1295@1|root,COG1295@2|Bacteria,1R9UY@1224|Proteobacteria,2VJV0@28216|Betaproteobacteria,4733S@75682|Oxalobacteraceae 28216|Betaproteobacteria S Virulence factor BrkB - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB DYD2_k127_5306575_0 395493.BegalDRAFT_1943 3.557e-132 429.0 COG2255@1|root,COG2255@2|Bacteria,1MU38@1224|Proteobacteria,1RNWY@1236|Gammaproteobacteria,45ZRZ@72273|Thiotrichales 72273|Thiotrichales L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing ruvB - 3.6.4.12 ko:K03551 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvB_C,RuvB_N DYD2_k127_5306575_1 1267535.KB906767_gene34 6.798e-54 197.0 COG0632@1|root,COG0632@2|Bacteria,3Y4KI@57723|Acidobacteria,2JJCJ@204432|Acidobacteriia 204432|Acidobacteriia L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB ruvA - 3.6.4.12 ko:K03550 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - HHH_5,RuvA_C,RuvA_N DYD2_k127_5306770_0 706587.Desti_1948 1.739e-163 539.0 COG0784@1|root,COG2198@1|root,COG2202@1|root,COG5002@1|root,COG0784@2|Bacteria,COG2198@2|Bacteria,COG2202@2|Bacteria,COG5002@2|Bacteria,1NC9X@1224|Proteobacteria,43BU6@68525|delta/epsilon subdivisions,2X756@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,Hpt,PAS,PAS_4,PAS_8,PAS_9,PocR,Response_reg DYD2_k127_5306770_1 1123073.KB899242_gene1412 4.446e-52 189.0 COG5394@1|root,COG5394@2|Bacteria,1RFY3@1224|Proteobacteria,1S3W3@1236|Gammaproteobacteria,1X66E@135614|Xanthomonadales 135614|Xanthomonadales S synthesis repressor, PhaR phaR - - - - - - - - - - - PHB_acc,PHB_acc_N DYD2_k127_5306770_2 2340.JV46_12370 1.179e-47 172.0 COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,1RVJU@1236|Gammaproteobacteria,1JBYF@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria I Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus phaC GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009058,GO:0016234,GO:0042618,GO:0042619,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0070088,GO:0071704,GO:1901440,GO:1901441,GO:1901576 - ko:K03821 ko00650,map00650 - R04254 RC00004 ko00000,ko00001,ko01000 - - - Abhydrolase_1 DYD2_k127_5310965_2 1342301.JASD01000008_gene1066 1.457e-29 123.0 28M2G@1|root,2ZAGX@2|Bacteria,1QDCH@1224|Proteobacteria,2U6R1@28211|Alphaproteobacteria,3ZZ6H@60136|Sulfitobacter 28211|Alphaproteobacteria S Protein of unknown function (DUF3800) - - - - - - - - - - - - DUF3800 DYD2_k127_5310965_0 247490.KSU1_C1161 3.461e-79 282.0 COG0265@1|root,COG0457@1|root,COG0265@2|Bacteria,COG0457@2|Bacteria 2|Bacteria S peptidyl-tyrosine sulfation yidC - - ko:K03217,ko:K06872 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP,DUF4124,PDZ_2,Peptidase_C11,SLH,TPM_phosphatase,TPR_11,Trypsin_2,YidC_periplas DYD2_k127_5310965_1 1382359.JIAL01000001_gene1755 1.333e-77 267.0 COG0442@1|root,COG0442@2|Bacteria,3Y329@57723|Acidobacteria,2JIBQ@204432|Acidobacteriia 204432|Acidobacteriia J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS proS - 6.1.1.15 ko:K01881 ko00970,map00970 M00359,M00360 R03661 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_2b,tRNA_edit DYD2_k127_5324683_0 927677.ALVU02000001_gene1668 3.046e-97 325.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G0BI@1117|Cyanobacteria,1H4M0@1142|Synechocystis 1117|Cyanobacteria S CHAT domain - - - - - - - - - - - - CHAT,TPR_12,TPR_7,TPR_8 DYD2_k127_5324683_2 1122214.AQWH01000048_gene4719 1.301e-06 50.0 COG3209@1|root,COG3210@1|root,COG3209@2|Bacteria,COG3210@2|Bacteria,1MX2K@1224|Proteobacteria,2U28Y@28211|Alphaproteobacteria 28211|Alphaproteobacteria U large exoproteins involved in heme utilization or adhesion - - - ko:K15125 ko05133,map05133 - - - ko00000,ko00001,ko00536 - - - DUF637,Fil_haemagg,Fil_haemagg_2,Haemagg_act DYD2_k127_5324683_1 700598.Niako_6986 6.339e-82 287.0 COG0477@1|root,COG2814@2|Bacteria 2|Bacteria EGP Major facilitator Superfamily - - - - - - - - - - - - MFS_1,MFS_1_like,Sugar_tr DYD2_k127_5337_0 946483.Cenrod_0867 1.208e-52 191.0 COG2405@1|root,COG2405@2|Bacteria,1Q0FJ@1224|Proteobacteria,2W58W@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_5337_3 211165.AJLN01000141_gene2456 7.164e-30 120.0 COG2886@1|root,COG2886@2|Bacteria,1G8EZ@1117|Cyanobacteria 1117|Cyanobacteria S Uncharacterised protein family (UPF0175) - - - - - - - - - - - - UPF0175 DYD2_k127_5337_4 240292.Ava_1928 3.196e-06 50.0 COG4715@1|root,COG4715@2|Bacteria,1G37G@1117|Cyanobacteria,1HKDE@1161|Nostocales 1117|Cyanobacteria S Zinc finger SWIM domain protein - - - - - - - - - - - - SWIM DYD2_k127_5337_1 102129.Lepto7375DRAFT_5664 1.329e-42 164.0 2F8R1@1|root,3413A@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5337_2 485913.Krac_11562 3.239e-33 131.0 COG0776@1|root,COG0776@2|Bacteria 2|Bacteria L regulation of translation - - - ko:K03530 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding,SPOR DYD2_k127_5340350_0 1121013.P873_12300 3.28e-60 220.0 arCOG08211@1|root,2ZBM3@2|Bacteria,1RIRV@1224|Proteobacteria,1SFXN@1236|Gammaproteobacteria,1X59H@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - DYD2_k127_5353976_0 264732.Moth_0463 2.436e-98 336.0 COG1001@1|root,COG1001@2|Bacteria,1TP84@1239|Firmicutes,247KN@186801|Clostridia,42ETM@68295|Thermoanaerobacterales 186801|Clostridia F Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family ade - 3.5.4.2 ko:K01486 ko00230,ko01100,map00230,map01100 - R01244 RC00477 ko00000,ko00001,ko01000 - - - Adenine_deam_C,Amidohydro_1 DYD2_k127_5353976_2 1236542.BALM01000038_gene4194 2.198e-08 61.0 COG1664@1|root,COG1664@2|Bacteria,1MZG6@1224|Proteobacteria,1RW7P@1236|Gammaproteobacteria,2QC0W@267890|Shewanellaceae 1236|Gammaproteobacteria M Polymer-forming cytoskeletal - - - - - - - - - - - - Bactofilin DYD2_k127_5353976_1 1463856.JOHY01000074_gene4362 6.484e-85 290.0 COG0043@1|root,COG0043@2|Bacteria,2GKSI@201174|Actinobacteria 201174|Actinobacteria H Belongs to the UbiD family - - 4.1.1.98 ko:K03182 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04985,R04986 RC00391 ko00000,ko00001,ko00002,ko01000 - - - UbiD DYD2_k127_5357731_0 485916.Dtox_2307 6.92e-42 170.0 COG0631@1|root,COG0631@2|Bacteria,1V6K5@1239|Firmicutes,24JD4@186801|Clostridia,261GN@186807|Peptococcaceae 186801|Clostridia T PFAM Protein phosphatase 2C stp - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C,PP2C_2 DYD2_k127_5357731_1 2074.JNYD01000004_gene4916 1.177e-33 147.0 COG0772@1|root,COG0772@2|Bacteria,2GJTI@201174|Actinobacteria,4DZX9@85010|Pseudonocardiales 201174|Actinobacteria D Belongs to the SEDS family rodA GO:0002682,GO:0002684,GO:0008150,GO:0009605,GO:0009607,GO:0009987,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051301,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0075136 - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FTSW_RODA_SPOVE DYD2_k127_5364507_1 321332.CYB_0455 1.833e-75 261.0 COG0854@1|root,COG0854@2|Bacteria,1G0QW@1117|Cyanobacteria,1GZKF@1129|Synechococcus 1117|Cyanobacteria H Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate pdxJ GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 ko:K03474 ko00750,ko01100,map00750,map01100 M00124 R05838 RC01476 ko00000,ko00001,ko00002,ko01000 - - - PdxJ DYD2_k127_5364507_2 926566.Terro_0936 1.714e-62 223.0 COG1215@1|root,COG1215@2|Bacteria,3Y3PN@57723|Acidobacteria,2JHSE@204432|Acidobacteriia 204432|Acidobacteriia M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_5364507_0 903818.KI912268_gene2333 2.288e-85 301.0 COG0793@1|root,COG0793@2|Bacteria,3Y3KP@57723|Acidobacteria 57723|Acidobacteria M Belongs to the peptidase S41A family - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_S41 DYD2_k127_5375616_1 1121405.dsmv_3246 1.033e-58 213.0 COG0472@1|root,COG1086@1|root,COG0472@2|Bacteria,COG1086@2|Bacteria,1MWYW@1224|Proteobacteria,42NVY@68525|delta/epsilon subdivisions,2X5IH@28221|Deltaproteobacteria,2MQ3P@213118|Desulfobacterales 28221|Deltaproteobacteria M PFAM Glycosyl transferase family 4 - - 2.7.8.33,2.7.8.35 ko:K02851 - - R08856 RC00002 ko00000,ko01000,ko01003,ko01005 - - - CoA_binding_3,Glycos_transf_4 DYD2_k127_5375616_0 886293.Sinac_6462 7.488e-157 500.0 COG0451@1|root,COG0451@2|Bacteria,2IX7V@203682|Planctomycetes 203682|Planctomycetes M PFAM NAD-dependent epimerase dehydratase - - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd DYD2_k127_5378950_0 1107311.Q767_03825 3.763e-79 271.0 COG3696@1|root,COG3696@2|Bacteria,4P36A@976|Bacteroidetes,1IJ7V@117743|Flavobacteriia,2NT81@237|Flavobacterium 976|Bacteroidetes P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family czcA - - ko:K07787 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4 - - ACR_tran DYD2_k127_5378950_1 472759.Nhal_1745 1.804e-46 184.0 COG0845@1|root,COG0845@2|Bacteria,1PQHB@1224|Proteobacteria,1T9ZT@1236|Gammaproteobacteria,1WYMB@135613|Chromatiales 135613|Chromatiales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - HlyD_3,HlyD_D23 DYD2_k127_5378950_2 1340493.JNIF01000003_gene4487 0.0004512 44.0 COG1538@1|root,COG1538@2|Bacteria 2|Bacteria MU efflux transmembrane transporter activity - - - - - - - - - - - - OEP DYD2_k127_5383178_2 266117.Rxyl_0222 4.034e-184 589.0 COG1953@1|root,COG1953@2|Bacteria,2GJXN@201174|Actinobacteria 201174|Actinobacteria FH permease for cytosine purines, uracil, thiamine, allantoin - - - ko:K03457 - - - - ko00000 2.A.39 - - Transp_cyt_pur DYD2_k127_5383178_3 1195236.CTER_0070 1.315e-32 136.0 COG2968@1|root,COG2968@2|Bacteria,1VB7C@1239|Firmicutes,24MYD@186801|Clostridia 186801|Clostridia S Protein of unknown function (DUF541) - - - ko:K09807 - - - - ko00000 - - - SIMPL DYD2_k127_5383178_1 378806.STAUR_8042 7.011e-195 617.0 COG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,42PXH@68525|delta/epsilon subdivisions,2WKEX@28221|Deltaproteobacteria,2YTWX@29|Myxococcales 28221|Deltaproteobacteria F Amidohydrolase family - - 3.5.2.2 ko:K01464 ko00240,ko00410,ko00770,ko00983,ko01100,map00240,map00410,map00770,map00983,map01100 M00046 R02269,R03055,R08227 RC00632,RC00680 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Amidohydro_1 DYD2_k127_5383178_0 1121920.AUAU01000018_gene1783 0.0 1124.0 COG1506@1|root,COG1506@2|Bacteria,3Y3XQ@57723|Acidobacteria 57723|Acidobacteria E Dienelactone hydrolase family - - - - - - - - - - - - PD40,Peptidase_S9 DYD2_k127_5383178_4 760192.Halhy_3357 5.005e-13 71.0 COG0160@1|root,COG0160@2|Bacteria,4NIHH@976|Bacteroidetes,1IWIQ@117747|Sphingobacteriia 976|Bacteroidetes E COGs COG0160 4-aminobutyrate aminotransferase and related aminotransferase - - 2.6.1.19,2.6.1.22 ko:K00823,ko:K07250 ko00250,ko00280,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00280,map00410,map00640,map00650,map01100,map01120 M00027 R00908,R01648,R04188 RC00006,RC00062,RC00160 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 DYD2_k127_5392738_2 51511.ENSCSAVP00000002845 4.181e-21 98.0 COG1028@1|root,KOG0725@2759|Eukaryota,38BUC@33154|Opisthokonta,3BC34@33208|Metazoa,3D09G@33213|Bilateria,485W0@7711|Chordata 33208|Metazoa Q Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 DYD2_k127_5392738_3 1219045.BV98_002620 1.674e-16 91.0 COG1596@1|root,COG1596@2|Bacteria,1N2G0@1224|Proteobacteria,2UECQ@28211|Alphaproteobacteria,2K4N6@204457|Sphingomonadales 204457|Sphingomonadales M Polysaccharide biosynthesis/export protein - - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB DYD2_k127_5392738_0 63737.Npun_F2400 1.186e-266 836.0 COG0531@1|root,COG0531@2|Bacteria,1G1I6@1117|Cyanobacteria,1HK4Y@1161|Nostocales 1117|Cyanobacteria E amino acid - - - - - - - - - - - - - DYD2_k127_5392738_1 63737.Npun_F2400 1.047e-141 459.0 COG0531@1|root,COG0531@2|Bacteria,1G1I6@1117|Cyanobacteria,1HK4Y@1161|Nostocales 1117|Cyanobacteria E amino acid - - - - - - - - - - - - - DYD2_k127_5397024_4 1071379.XP_004179671.1 2.041e-06 51.0 COG0513@1|root,KOG0330@2759|Eukaryota,38BAD@33154|Opisthokonta,3NUFI@4751|Fungi,3QKB6@4890|Ascomycota,3RTB9@4891|Saccharomycetes,3RY97@4893|Saccharomycetaceae 4751|Fungi A Belongs to the DEAD box helicase family RRP3 GO:0000462,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0030490,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 3.6.4.13 ko:K14777 - - - - ko00000,ko01000,ko03009 - - - DEAD,Helicase_C DYD2_k127_5397024_2 335543.Sfum_0084 6.675e-36 139.0 COG0724@1|root,COG0724@2|Bacteria,1N6VR@1224|Proteobacteria,42UQP@68525|delta/epsilon subdivisions,2WQKU@28221|Deltaproteobacteria,2MS96@213462|Syntrophobacterales 28221|Deltaproteobacteria S RNA recognition motif - - - - - - - - - - - - RRM_1 DYD2_k127_5397024_3 1157708.KB907450_gene6479 1.649e-18 90.0 COG2105@1|root,COG2105@2|Bacteria,1NIAM@1224|Proteobacteria,2VVWY@28216|Betaproteobacteria,4AFR7@80864|Comamonadaceae 28216|Betaproteobacteria S Gamma-glutamyl cyclotransferase, AIG2-like - - - - - - - - - - - - GGACT DYD2_k127_5397024_0 1123508.JH636439_gene1341 3.346e-106 361.0 COG1520@1|root,COG1520@2|Bacteria,2IXSV@203682|Planctomycetes 203682|Planctomycetes S PQQ-like domain - - - - - - - - - - - - PQQ_2 DYD2_k127_5397024_1 1454004.AW11_01185 9.931e-85 288.0 COG1051@1|root,COG1051@2|Bacteria 2|Bacteria F GDP-mannose mannosyl hydrolase activity - - 3.6.1.13,3.6.1.55 ko:K01515,ko:K03574,ko:K12944 ko00230,map00230 - R01054 RC00002 ko00000,ko00001,ko01000,ko03400 - - - HAD_2,NUDIX DYD2_k127_5413356_1 204669.Acid345_4703 6.915e-08 55.0 COG2318@1|root,COG2318@2|Bacteria,3Y4AI@57723|Acidobacteria,2JKRK@204432|Acidobacteriia 204432|Acidobacteriia S Protein of unknown function (DUF1572) - - - - - - - - - - - - DUF1572 DYD2_k127_5413356_0 635013.TherJR_1081 5.19e-38 158.0 COG2865@1|root,COG2865@2|Bacteria,1TSPK@1239|Firmicutes,249QT@186801|Clostridia,262ZV@186807|Peptococcaceae 186801|Clostridia K transcriptional regulator - - 3.6.4.12 ko:K03655 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - AlbA_2,HATPase_c_4 DYD2_k127_5417113_0 204669.Acid345_0689 1.016e-58 208.0 COG2805@1|root,COG2805@2|Bacteria,3Y316@57723|Acidobacteria,2JIT4@204432|Acidobacteriia 204432|Acidobacteriia NU Type II/IV secretion system protein - - - ko:K02669 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE DYD2_k127_5417113_2 234267.Acid_1083 1.699e-23 116.0 COG2304@1|root,COG2304@2|Bacteria,3Y38P@57723|Acidobacteria 2|Bacteria S von Willebrand factor, type A - - - ko:K07114,ko:K12511 - - - - ko00000,ko02000,ko02044 1.A.13.2.2,1.A.13.2.3 - - FHA,VWA,VWA_2 DYD2_k127_5417113_1 1267533.KB906733_gene3397 7.568e-29 129.0 COG2304@1|root,COG2304@2|Bacteria,3Y2IE@57723|Acidobacteria,2JI1J@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor (vWF) type A domain - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA,VWA_2 DYD2_k127_5427254_1 204669.Acid345_4495 1.587e-49 190.0 COG2027@1|root,COG2027@2|Bacteria,3Y3WF@57723|Acidobacteria,2JIBN@204432|Acidobacteriia 204432|Acidobacteriia M PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C - - 3.4.16.4 ko:K07259 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Peptidase_S13 DYD2_k127_5427254_0 639030.JHVA01000001_gene248 1.491e-78 288.0 COG0457@1|root,COG0515@1|root,COG5616@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,COG5616@2|Bacteria,3Y2HR@57723|Acidobacteria,2JI02@204432|Acidobacteriia 204432|Acidobacteriia KLT Tetratricopeptide repeats - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase,TPR_8 DYD2_k127_5430572_1 1174528.JH992898_gene1586 2.941e-73 250.0 COG0596@1|root,COG0596@2|Bacteria,1G21Y@1117|Cyanobacteria,1JI6G@1189|Stigonemataceae 1117|Cyanobacteria S TAP-like protein pip - 3.4.11.5 ko:K01259 ko00330,map00330 - R00135 - ko00000,ko00001,ko01000,ko01002 - - - Abhydrolase_1 DYD2_k127_5430572_2 204669.Acid345_4201 5.488e-71 243.0 COG1403@1|root,COG1403@2|Bacteria,3Y3PW@57723|Acidobacteria,2JI65@204432|Acidobacteriia 204432|Acidobacteriia L HNH endonuclease - - - - - - - - - - - - HNH_5 DYD2_k127_5430572_4 348780.NP_4350A 2.032e-05 49.0 COG1826@1|root,arCOG02694@2157|Archaea,2XZZ6@28890|Euryarchaeota 28890|Euryarchaeota U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system tatA - - ko:K03116 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 DYD2_k127_5430572_3 670292.JH26_24975 4.521e-07 61.0 COG0500@1|root,COG2226@2|Bacteria,1R79J@1224|Proteobacteria,2U421@28211|Alphaproteobacteria 28211|Alphaproteobacteria Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD2_k127_5430572_0 886293.Sinac_1825 3.727e-181 574.0 COG2256@1|root,COG2256@2|Bacteria,2IX8G@203682|Planctomycetes 203682|Planctomycetes L ATPase related to the helicase subunit of the Holliday junction resolvase - - - ko:K07478 - - - - ko00000 - - - AAA,AAA_assoc_2,MgsA_C,RuvB_N DYD2_k127_5433840_1 316067.Geob_3083 8.345e-31 136.0 COG0745@1|root,COG0745@2|Bacteria,1NER5@1224|Proteobacteria,42VHC@68525|delta/epsilon subdivisions,2WSGQ@28221|Deltaproteobacteria,43UMT@69541|Desulfuromonadales 28221|Deltaproteobacteria T response regulator - - - - - - - - - - - - Response_reg DYD2_k127_5433840_2 1173026.Glo7428_3072 5.643e-21 96.0 COG0642@1|root,COG0745@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,1G0P4@1117|Cyanobacteria 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,Response_reg DYD2_k127_5433840_3 1089547.KB913013_gene557 6.117e-19 92.0 COG0745@1|root,COG0745@2|Bacteria,4NP5C@976|Bacteroidetes,47Q8S@768503|Cytophagia 976|Bacteroidetes KT response regulator, receiver - - - - - - - - - - - - Response_reg DYD2_k127_5433840_0 1167006.UWK_03360 2.495e-42 158.0 COG1995@1|root,COG1995@2|Bacteria,1MX5W@1224|Proteobacteria,42NJJ@68525|delta/epsilon subdivisions,2WJGI@28221|Deltaproteobacteria,2MHYF@213118|Desulfobacterales 28221|Deltaproteobacteria H Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) pdxA - 1.1.1.262,1.1.1.408,1.1.1.409 ko:K00097,ko:K22024 ko00750,ko01100,map00750,map01100 M00124 R05681,R05837,R07406 RC00089,RC00675,RC01475 ko00000,ko00001,ko00002,ko01000 - - - PdxA DYD2_k127_5458137_2 671143.DAMO_0449 2.848e-05 49.0 COG1572@1|root,COG1572@2|Bacteria 2|Bacteria NU bacterial-type flagellum-dependent cell motility - - - - - - - - - - - - DUF11,DUF3367,DUF5122,HemolysinCabind,NPCBM DYD2_k127_5458137_0 1382359.JIAL01000001_gene1929 2.043e-113 373.0 COG1398@1|root,COG1398@2|Bacteria,3Y3F9@57723|Acidobacteria,2JHWH@204432|Acidobacteriia 204432|Acidobacteriia I PFAM Fatty acid desaturase - - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase DYD2_k127_5458137_1 382464.ABSI01000013_gene1750 5.044e-86 297.0 COG0513@1|root,COG0513@2|Bacteria,46TUA@74201|Verrucomicrobia,2ITQU@203494|Verrucomicrobiae 203494|Verrucomicrobiae L helicase superfamily c-terminal domain - - - - - - - - - - - - DEAD,Helicase_C DYD2_k127_5460090_0 883.DvMF_1274 1.362e-35 149.0 COG3613@1|root,COG3613@2|Bacteria,1RKN9@1224|Proteobacteria,42WY0@68525|delta/epsilon subdivisions,2WTEI@28221|Deltaproteobacteria 28221|Deltaproteobacteria F nucleoside 2-deoxyribosyltransferase - - - - - - - - - - - - - DYD2_k127_5460090_1 1157640.AQWO01000010_gene2953 5.246e-31 128.0 2E4H1@1|root,32ZC5@2|Bacteria,2IFIP@201174|Actinobacteria 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_5478420_3 398512.JQKC01000025_gene3154 4.675e-15 75.0 COG0739@1|root,COG0739@2|Bacteria,1V3ZU@1239|Firmicutes,24JM4@186801|Clostridia,3WK89@541000|Ruminococcaceae 186801|Clostridia M Membrane proteins related to metalloendopeptidases - - - - - - - - - - - - Peptidase_M23 DYD2_k127_5478420_1 360911.EAT1b_1944 2.116e-25 107.0 COG1278@1|root,COG1278@2|Bacteria,1VEE0@1239|Firmicutes,4HNJC@91061|Bacilli 91061|Bacilli K Cold-Shock Protein - - - ko:K03704 - - - - ko00000,ko03000 - - - CSD DYD2_k127_5478420_0 204669.Acid345_0269 1.553e-26 118.0 2ENGH@1|root,33G40@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5478420_2 1192034.CAP_7314 1.521e-17 88.0 COG1921@1|root,COG1921@2|Bacteria,1MWXI@1224|Proteobacteria,42MU7@68525|delta/epsilon subdivisions,2WJFQ@28221|Deltaproteobacteria,2YU5T@29|Myxococcales 28221|Deltaproteobacteria H Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis selA GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 ko:K01042 ko00450,ko00970,map00450,map00970 - R08219 RC01246 ko00000,ko00001,ko01000 - - - Se-cys_synth_N,SelA DYD2_k127_5478592_2 1382306.JNIM01000001_gene2822 2.701e-35 149.0 COG0707@1|root,COG0707@2|Bacteria,2G6CA@200795|Chloroflexi 200795|Chloroflexi M Glycosyltransferase 28 domain - - 2.4.1.46 ko:K03715 ko00561,ko01100,map00561,map01100 - R02691 RC00005,RC00059 ko00000,ko00001,ko01000,ko01003 - GT28 - Glyco_tran_28_C,MGDG_synth DYD2_k127_5478592_1 1122921.KB898201_gene3195 2.855e-37 155.0 COG0535@1|root,COG0535@2|Bacteria,1UXWS@1239|Firmicutes 1239|Firmicutes C Radical SAM - - - ko:K22227 - - - - ko00000 - - - Fer4_12,Fer4_14,Radical_SAM,SPASM DYD2_k127_5478592_0 234267.Acid_3413 2.547e-118 389.0 COG2204@1|root,COG2204@2|Bacteria,3Y2J1@57723|Acidobacteria 57723|Acidobacteria T two component, sigma54 specific, transcriptional regulator, Fis family - - - ko:K13599 ko02020,map02020 M00498 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_5485345_1 204669.Acid345_1387 0.0007985 50.0 COG2931@1|root,COG3391@1|root,COG4625@1|root,COG2931@2|Bacteria,COG3391@2|Bacteria,COG4625@2|Bacteria,3Y49I@57723|Acidobacteria,2JI4I@204432|Acidobacteriia 204432|Acidobacteriia G Bacterial Ig-like domain (group 3) - - - - - - - - - - - - Big_3_5,VCBS DYD2_k127_5485345_0 234267.Acid_3356 1.192e-64 254.0 COG1629@1|root,COG4771@2|Bacteria,3Y2QR@57723|Acidobacteria 57723|Acidobacteria P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg DYD2_k127_549752_1 234267.Acid_6648 6.795e-60 227.0 COG1629@1|root,COG4771@2|Bacteria,3Y6QJ@57723|Acidobacteria 234267.Acid_6648|- P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - - DYD2_k127_549752_2 1340493.JNIF01000003_gene4236 8.338e-50 185.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1,Methyltransf_11,Methyltransf_23,Methyltransf_25 DYD2_k127_549752_0 243231.GSU1997 1.243e-96 331.0 COG1625@1|root,COG1625@2|Bacteria,1R76F@1224|Proteobacteria,42PNQ@68525|delta/epsilon subdivisions,2WKT9@28221|Deltaproteobacteria,43SDY@69541|Desulfuromonadales 28221|Deltaproteobacteria C Protein of unknown function (DUF512) - - - - - - - - - - - - DUF512 DYD2_k127_5503193_3 187303.BN69_3017 1.135e-19 93.0 2E36Z@1|root,32Y6R@2|Bacteria,1NCM6@1224|Proteobacteria,2UGU3@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_5503193_0 211165.AJLN01000120_gene804 4.517e-91 307.0 COG1226@1|root,2ZCE6@2|Bacteria,1FZWR@1117|Cyanobacteria,1JHYA@1189|Stigonemataceae 1117|Cyanobacteria P Ion transport protein - - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Ion_trans,Ion_trans_2 DYD2_k127_5503193_2 1095769.CAHF01000011_gene2134 1.899e-25 108.0 2C5IF@1|root,2Z9B7@2|Bacteria,1R5AB@1224|Proteobacteria,2VJXM@28216|Betaproteobacteria 28216|Betaproteobacteria S Protein of unknown function (DUF1264) - - - - - - - - - - - - DUF1264 DYD2_k127_5503193_7 316273.XCV2080 1.427e-05 48.0 2C5IF@1|root,2Z9B7@2|Bacteria,1R5AB@1224|Proteobacteria,1S13C@1236|Gammaproteobacteria,1X5C2@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1264) - - - - - - - - - - - - DUF1264 DYD2_k127_5503193_4 1333856.L686_12415 2.184e-19 88.0 2C5IF@1|root,2Z9B7@2|Bacteria,1R5AB@1224|Proteobacteria,1S13C@1236|Gammaproteobacteria,1Z0RP@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria S Protein of unknown function (DUF1264) - - - - - - - - - - - - DUF1264 DYD2_k127_5503193_5 1382306.JNIM01000001_gene1681 1.637e-12 68.0 28SF2@1|root,2ZERN@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5503193_1 1209072.ALBT01000078_gene371 2.385e-26 115.0 COG5592@1|root,COG5592@2|Bacteria,1RI8J@1224|Proteobacteria,1SGA2@1236|Gammaproteobacteria,1FIBC@10|Cellvibrio 1236|Gammaproteobacteria S Hemerythrin HHE cation binding domain - - - - - - - - - - - - Hemerythrin DYD2_k127_5504861_0 338966.Ppro_2406 1.17e-109 370.0 COG1570@1|root,COG1570@2|Bacteria,1MUA4@1224|Proteobacteria,42MSB@68525|delta/epsilon subdivisions,2WJI6@28221|Deltaproteobacteria,43TW2@69541|Desulfuromonadales 28221|Deltaproteobacteria J Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseA - 3.1.11.6 ko:K03601 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_L,tRNA_anti_2 DYD2_k127_5504861_1 1267533.KB906733_gene3397 2.075e-18 99.0 COG2304@1|root,COG2304@2|Bacteria,3Y2IE@57723|Acidobacteria,2JI1J@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor (vWF) type A domain - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA,VWA_2 DYD2_k127_5510197_0 1218084.BBJK01000075_gene5239 1.043e-166 558.0 COG2909@1|root,COG3629@1|root,COG2909@2|Bacteria,COG3629@2|Bacteria,1MVZZ@1224|Proteobacteria,2VXDK@28216|Betaproteobacteria,1K5E1@119060|Burkholderiaceae 28216|Betaproteobacteria K Bacterial transcriptional activator domain - - - - - - - - - - - - BTAD DYD2_k127_5514168_0 272134.KB731326_gene241 1.656e-37 153.0 COG0457@1|root,COG4249@1|root,COG0457@2|Bacteria,COG4249@2|Bacteria,1GH3E@1117|Cyanobacteria,1HGR0@1150|Oscillatoriales 1117|Cyanobacteria S Caspase domain - - - - - - - - - - - - Peptidase_C14 DYD2_k127_5548401_1 335659.S23_47550 3.868e-71 255.0 COG0642@1|root,COG0784@1|root,COG2198@1|root,COG3850@1|root,COG0784@2|Bacteria,COG2198@2|Bacteria,COG2205@2|Bacteria,COG3850@2|Bacteria,1NRP8@1224|Proteobacteria,2TX3Q@28211|Alphaproteobacteria 28211|Alphaproteobacteria T Histidine kinase-like ATPases - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,Hpt,Response_reg,dCache_1 DYD2_k127_5548401_0 671143.DAMO_2595 1.166e-129 427.0 COG2204@1|root,COG2204@2|Bacteria,2NP3X@2323|unclassified Bacteria 2|Bacteria T COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - ko:K13599 ko02020,map02020 M00498 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_5573156_6 909663.KI867150_gene239 7.569e-23 98.0 2BK2H@1|root,32EFV@2|Bacteria,1RDCE@1224|Proteobacteria,42ZFM@68525|delta/epsilon subdivisions 1224|Proteobacteria L Restriction endonuclease BglII - - - - - - - - - - - - Endonuc-BglII DYD2_k127_5573156_4 1121271.AUCM01000005_gene844 1.543e-38 155.0 28J7N@1|root,2Z931@2|Bacteria,1MU88@1224|Proteobacteria,2U33G@28211|Alphaproteobacteria 28211|Alphaproteobacteria L Restriction endonuclease BglII - - - - - - - - - - - - Endonuc-BglII DYD2_k127_5573156_1 159087.Daro_3525 1.983e-135 451.0 COG0270@1|root,COG0270@2|Bacteria,1PPPE@1224|Proteobacteria,2WAHH@28216|Betaproteobacteria,2KYYC@206389|Rhodocyclales 206389|Rhodocyclales H C-5 cytosine-specific DNA methylase - - 2.1.1.37 ko:K00558 ko00270,ko01100,ko05206,map00270,map01100,map05206 M00035 R04858 RC00003,RC00332 ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036 - - - DNA_methylase DYD2_k127_5573156_5 136993.KB900626_gene1075 1.173e-31 142.0 COG3727@1|root,COG3727@2|Bacteria,1RH1C@1224|Proteobacteria,2UC41@28211|Alphaproteobacteria 28211|Alphaproteobacteria L May nick specific sequences that contain T G mispairs resulting from m5C-deamination vsr - - ko:K07458 - - - - ko00000,ko01000,ko03400 - - - Vsr DYD2_k127_5573156_2 379066.GAU_3569 4.933e-114 389.0 COG0270@1|root,COG0270@2|Bacteria 2|Bacteria L DNA (cytosine-5-)-methyltransferase activity - GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008168,GO:0009307,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0032776,GO:0034641,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044355,GO:0044728,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0099046,GO:1901360 2.1.1.37 ko:K00558 ko00270,ko01100,ko05206,map00270,map01100,map05206 M00035 R04858 RC00003,RC00332 ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036 - - - DNA_methylase DYD2_k127_5573156_0 693986.MOC_5375 2.873e-187 608.0 COG4191@1|root,COG4191@2|Bacteria,1ND4X@1224|Proteobacteria,2TXKN@28211|Alphaproteobacteria,1JYIH@119045|Methylobacteriaceae 28211|Alphaproteobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HATPase_c_3 DYD2_k127_5578401_2 1235790.C805_03588 0.0005553 49.0 COG0840@1|root,COG4936@1|root,COG0840@2|Bacteria,COG4936@2|Bacteria,1UE0Y@1239|Firmicutes,24AR0@186801|Clostridia,25W6Z@186806|Eubacteriaceae 186801|Clostridia KNT Sensory domain found in PocR - - - - - - - - - - - - MCPsignal,PocR DYD2_k127_5578401_0 251221.35214696 4.928e-126 421.0 COG4608@1|root,COG4608@2|Bacteria,1GR1J@1117|Cyanobacteria 1117|Cyanobacteria E ATPases associated with a variety of cellular activities - - 3.6.3.24 ko:K10823,ko:K10824 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00439,M00440 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - ABC_tran,oligo_HPY DYD2_k127_5578401_1 1306174.JODP01000001_gene4743 2.663e-22 101.0 COG0444@1|root,COG0444@2|Bacteria,2GIXV@201174|Actinobacteria 201174|Actinobacteria EP Belongs to the ABC transporter superfamily dppD - - ko:K02031,ko:K15583 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00239,M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - ABC_tran,oligo_HPY DYD2_k127_558383_1 56780.SYN_00583 1.92e-80 275.0 COG0001@1|root,COG0001@2|Bacteria,1MUY5@1224|Proteobacteria,42MBF@68525|delta/epsilon subdivisions,2WJQ2@28221|Deltaproteobacteria,2MQAB@213462|Syntrophobacterales 28221|Deltaproteobacteria H PFAM aminotransferase class-III hemL - 5.4.3.8 ko:K01845 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02272 RC00677 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 DYD2_k127_558383_0 710111.FraQA3DRAFT_4760 3.677e-151 497.0 COG1231@1|root,COG1231@2|Bacteria,2GMV0@201174|Actinobacteria 201174|Actinobacteria E amine oxidase - - 1.4.3.4 ko:K00274 ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034 M00135 R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354 RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713 ko00000,ko00001,ko00002,ko01000 - - - Amino_oxidase DYD2_k127_558383_2 1123023.JIAI01000009_gene1233 3.511e-38 147.0 COG0501@1|root,COG0501@2|Bacteria,2HV37@201174|Actinobacteria 201174|Actinobacteria O Belongs to the peptidase M48B family - - - - - - - - - - - - - DYD2_k127_558383_3 1340493.JNIF01000004_gene259 1.835e-13 74.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - - - - - - - - - - - Glyoxalase DYD2_k127_5589143_1 644801.Psest_4275 6.024e-16 93.0 COG1629@1|root,COG4771@2|Bacteria,1MX42@1224|Proteobacteria,1SYKT@1236|Gammaproteobacteria,1Z16H@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria M COG1629 Outer membrane receptor proteins, mostly Fe transport - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec DYD2_k127_5589143_2 387631.Asulf_01377 5.034e-13 71.0 arCOG14051@1|root,arCOG14051@2157|Archaea,2Y4SW@28890|Euryarchaeota 28890|Euryarchaeota S HicA toxin of bacterial toxin-antitoxin, - - - - - - - - - - - - HicA_toxin DYD2_k127_5589143_0 59196.RICGR_0448 4.468e-19 92.0 COG1598@1|root,COG1598@2|Bacteria,1N9I2@1224|Proteobacteria,1SZY8@1236|Gammaproteobacteria 1236|Gammaproteobacteria S HicB_like antitoxin of bacterial toxin-antitoxin system - - - - - - - - - - - - HicB_lk_antitox DYD2_k127_5590905_0 1121957.ATVL01000009_gene1201 4.308e-148 478.0 COG2170@1|root,COG2170@2|Bacteria,4NFFP@976|Bacteroidetes,47KG2@768503|Cytophagia 976|Bacteroidetes S ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity ybdK - - ko:K06048 - - - - ko00000,ko01000 - - - GCS2 DYD2_k127_5590905_3 1122604.JONR01000034_gene418 1.642e-08 64.0 295V1@1|root,2ZT62@2|Bacteria,1P75A@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_5590905_2 1286093.C266_25460 7.877e-10 64.0 COG3063@1|root,COG3063@2|Bacteria,1N2T8@1224|Proteobacteria,2WG23@28216|Betaproteobacteria 28216|Betaproteobacteria NU COG0457 FOG TPR repeat - - - - - - - - - - - - - DYD2_k127_5590905_1 1118054.CAGW01000017_gene4496 1.374e-57 206.0 COG1413@1|root,COG1413@2|Bacteria,1TRJT@1239|Firmicutes,4HBFD@91061|Bacilli,26SEA@186822|Paenibacillaceae 91061|Bacilli C virulence factor ypgR - - - - - - - - - - - HEAT_2,HEAT_PBS,Nfu_N,Virulence_fact DYD2_k127_5593489_3 484770.UFO1_2165 3.809e-23 107.0 COG0260@1|root,COG0260@2|Bacteria,1TPJZ@1239|Firmicutes,4H3I7@909932|Negativicutes 909932|Negativicutes E Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides pepA - 3.4.11.1 ko:K01255 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M17,Peptidase_M17_N DYD2_k127_5593489_1 1382304.JNIL01000001_gene2904 1.261e-45 171.0 COG0691@1|root,COG0691@2|Bacteria,1V3IJ@1239|Firmicutes,4HGZX@91061|Bacilli,278BJ@186823|Alicyclobacillaceae 91061|Bacilli O the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA smpB GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070930,GO:0071704,GO:1901564 - ko:K03664 - - - - ko00000 - - - SmpB DYD2_k127_5593489_0 243231.GSU0006 2.057e-91 312.0 COG0240@1|root,COG0240@2|Bacteria,1MUU3@1224|Proteobacteria,42NQB@68525|delta/epsilon subdivisions,2WIWW@28221|Deltaproteobacteria,43TUN@69541|Desulfuromonadales 28221|Deltaproteobacteria I NAD-dependent glycerol-3-phosphate dehydrogenase domain protein gpsA - 1.1.1.94 ko:K00057 ko00564,ko01110,map00564,map01110 - R00842,R00844 RC00029 ko00000,ko00001,ko01000 - - - NAD_Gly3P_dh_C,NAD_Gly3P_dh_N DYD2_k127_5593489_2 682795.AciX8_1205 1.219e-40 159.0 COG0344@1|root,COG0344@2|Bacteria,3Y51D@57723|Acidobacteria,2JJFC@204432|Acidobacteriia 204432|Acidobacteriia I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP plsY - 2.3.1.15 ko:K08591 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - G3P_acyltransf DYD2_k127_5593489_4 1242864.D187_007970 4.375e-22 96.0 COG2124@1|root,COG2124@2|Bacteria,1MY5H@1224|Proteobacteria,438QG@68525|delta/epsilon subdivisions,2X3XV@28221|Deltaproteobacteria,2YXI6@29|Myxococcales 28221|Deltaproteobacteria C Cytochrome P450 - - - ko:K15468 - - - - ko00000,ko01008 - - - p450 DYD2_k127_560707_5 487796.Flav2ADRAFT_1765 0.0002564 48.0 2EJCC@1|root,33D3E@2|Bacteria,4P3XE@976|Bacteroidetes,1I9XF@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD2_k127_560707_2 751994.AGIG01000031_gene236 6.623e-34 135.0 COG3640@1|root,COG3640@2|Bacteria,1RB02@1224|Proteobacteria,1SGMS@1236|Gammaproteobacteria 1236|Gammaproteobacteria D CobQ/CobB/MinD/ParA nucleotide binding domain - - - ko:K07321 - - - - ko00000 - - - CbiA DYD2_k127_560707_3 1202768.JROF01000007_gene2669 5.188e-25 111.0 COG3640@1|root,arCOG00587@2157|Archaea,2XW7J@28890|Euryarchaeota,23Z04@183963|Halobacteria 183963|Halobacteria D Anion-transporting ATPase - - - - - - - - - - - - CbiA DYD2_k127_560707_1 1202768.JROF01000007_gene2673 3.574e-35 142.0 COG0680@1|root,arCOG04429@2157|Archaea,2Y6ZS@28890|Euryarchaeota,23ZJP@183963|Halobacteria 183963|Halobacteria C Hydrogenase maturation protease - - - - - - - - - - - - HycI DYD2_k127_560707_0 398578.Daci_5670 6.991e-85 292.0 COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2VNPN@28216|Betaproteobacteria,4ABKT@80864|Comamonadaceae 28216|Betaproteobacteria P PFAM binding-protein-dependent transport systems inner membrane component - - - ko:K02033 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1 DYD2_k127_560707_4 309801.trd_1280 1.148e-24 108.0 COG1173@1|root,COG1173@2|Bacteria,2G6HB@200795|Chloroflexi,27Z1W@189775|Thermomicrobia 189775|Thermomicrobia EP Binding-protein-dependent transport system inner membrane component - - - ko:K02034 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1 DYD2_k127_5607206_0 1198114.AciX9_1376 6.96e-143 459.0 COG0039@1|root,COG0039@2|Bacteria,3Y2PG@57723|Acidobacteria,2JII1@204432|Acidobacteriia 204432|Acidobacteriia C Catalyzes the reversible oxidation of malate to oxaloacetate mdh - 1.1.1.37 ko:K00024 ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740 R00342,R07136 RC00031 ko00000,ko00001,ko00002,ko01000 - - - Ldh_1_C,Ldh_1_N DYD2_k127_5607206_1 234267.Acid_0471 7.793e-24 105.0 COG1193@1|root,COG1193@2|Bacteria,3Y8PZ@57723|Acidobacteria 57723|Acidobacteria L Smr domain - - - - - - - - - - - - Smr DYD2_k127_5607206_2 879212.DespoDRAFT_03365 1.602e-11 77.0 COG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,42MNP@68525|delta/epsilon subdivisions,2WMJZ@28221|Deltaproteobacteria,2MJAM@213118|Desulfobacterales 28221|Deltaproteobacteria M export protein wza2 - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB DYD2_k127_5607206_3 696369.KI912183_gene2611 8.929e-10 70.0 COG0666@1|root,COG0666@2|Bacteria,1V2DE@1239|Firmicutes,24NHF@186801|Clostridia 186801|Clostridia S PFAM Ankyrin - - - ko:K21440 - - - - ko00000,ko04131 - - - Ank,Ank_2,Ank_4,Ank_5 DYD2_k127_5608030_1 167555.NATL1_00731 4.627e-16 91.0 COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria,1GMXH@1117|Cyanobacteria,1MNCP@1212|Prochloraceae 1117|Cyanobacteria O Glycosyl transferase family 41 - - - - - - - - - - - - Glyco_transf_41,TPR_1,TPR_8 DYD2_k127_5608030_0 928724.SacglDRAFT_02511 1.351e-36 154.0 COG1262@1|root,COG1262@2|Bacteria,2GK9Q@201174|Actinobacteria,4DZXW@85010|Pseudonocardiales 201174|Actinobacteria S Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma- L-glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine egtB GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006082,GO:0006520,GO:0006547,GO:0006548,GO:0006575,GO:0006577,GO:0006578,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016491,GO:0019439,GO:0019752,GO:0034641,GO:0042398,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0052698,GO:0052699,GO:0052701,GO:0052703,GO:0052704,GO:0052708,GO:0052803,GO:0052805,GO:0055114,GO:0071704,GO:0097164,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606 1.14.99.50 ko:K18912 ko00340,map00340 - R11013 RC03323,RC03324 ko00000,ko00001,ko01000 - - - DinB_2,FGE-sulfatase DYD2_k127_5609917_6 1210884.HG799468_gene13789 6.948e-19 92.0 COG0501@1|root,COG0501@2|Bacteria 2|Bacteria O metalloendopeptidase activity - - - - - - - - - - - - Peptidase_M48 DYD2_k127_5609917_7 204669.Acid345_4293 9.117e-12 75.0 COG2823@1|root,COG2823@2|Bacteria,3Y99E@57723|Acidobacteria,2JP08@204432|Acidobacteriia 204432|Acidobacteriia S Periplasmic or secreted lipoprotein - - - - - - - - - - - - - DYD2_k127_5609917_1 1162668.LFE_1699 1.398e-65 229.0 COG0377@1|root,COG0377@2|Bacteria,3J11S@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q6 DYD2_k127_5609917_5 1162668.LFE_1700 4.659e-31 126.0 COG0838@1|root,COG0838@2|Bacteria,3J0MS@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00330 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q4 DYD2_k127_5609917_2 1329516.JPST01000009_gene2098 1.11e-49 183.0 COG0521@1|root,COG0521@2|Bacteria,1V3XM@1239|Firmicutes,4IBW3@91061|Bacilli,27CY3@186824|Thermoactinomycetaceae 91061|Bacilli H Probable molybdopterin binding domain - - - - - - - - - - - - MoCF_biosynth DYD2_k127_5609917_3 118166.JH976537_gene1391 2.596e-49 183.0 COG4636@1|root,COG4636@2|Bacteria,1G55I@1117|Cyanobacteria,1HATI@1150|Oscillatoriales 1117|Cyanobacteria S Putative restriction endonuclease - - - - - - - - - - - - Uma2 DYD2_k127_5609917_4 330214.NIDE4359 3.436e-44 164.0 COG1832@1|root,COG1832@2|Bacteria,3J19F@40117|Nitrospirae 40117|Nitrospirae S CoA binding domain - - - ko:K06929 - - - - ko00000 - - - CoA_binding_2 DYD2_k127_5609917_0 1267535.KB906767_gene717 0.0 1242.0 COG0458@1|root,COG0458@2|Bacteria,3Y3GG@57723|Acidobacteria,2JIJZ@204432|Acidobacteriia 204432|Acidobacteriia F TIGRFAM carbamoyl-phosphate synthase, large subunit carB - 6.3.5.5 ko:K01955 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_L_D2,CPSase_L_D3,MGS DYD2_k127_5622300_5 1123371.ATXH01000018_gene1395 3.57e-23 107.0 COG0457@1|root,COG3063@1|root,COG0457@2|Bacteria,COG3063@2|Bacteria,2GIEA@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria NU Tetratricopeptide repeat - - - - - - - - - - - - TPR_16 DYD2_k127_5622300_4 1499967.BAYZ01000118_gene3288 2.332e-38 151.0 COG1269@1|root,COG1269@2|Bacteria 2|Bacteria C ATP hydrolysis coupled proton transport ntpI GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K02123 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - DUF3485,V_ATPase_I DYD2_k127_5622300_2 1125863.JAFN01000001_gene383 3.644e-69 246.0 COG1269@1|root,COG1269@2|Bacteria,1MXZG@1224|Proteobacteria,42R3N@68525|delta/epsilon subdivisions,2WMY8@28221|Deltaproteobacteria 28221|Deltaproteobacteria C eight transmembrane protein EpsH epsH - - - - - - - - - - - DUF3485,Exosortase_EpsH DYD2_k127_5622300_6 1336208.JADY01000015_gene1345 7.329e-06 60.0 COG1361@1|root,COG2340@1|root,COG2931@1|root,COG4932@1|root,COG1361@2|Bacteria,COG2340@2|Bacteria,COG2931@2|Bacteria,COG4932@2|Bacteria,1MU7T@1224|Proteobacteria 1224|Proteobacteria Q COG2931, RTX toxins and related Ca2 -binding proteins - - - - - - - - - - - - HasA,HemolysinCabind DYD2_k127_5622300_7 287986.DV20_15525 7.271e-05 55.0 COG3420@1|root,COG3420@2|Bacteria,2GN61@201174|Actinobacteria,4E283@85010|Pseudonocardiales 201174|Actinobacteria P Chondroitinase B algL - 4.2.2.3 ko:K01729 ko00051,map00051 - R03706 - ko00000,ko00001,ko01000 - - - Chondroitinas_B DYD2_k127_5622300_0 1340493.JNIF01000002_gene1241 1.669e-176 572.0 COG0367@1|root,COG0367@2|Bacteria,3Y6CC@57723|Acidobacteria 2|Bacteria E TIGRFAM asparagine synthase (glutamine-hydrolyzing) - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_6,GATase_7 DYD2_k127_5622300_1 985867.AEWF01000010_gene1204 8.692e-169 552.0 COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,2TSCY@28211|Alphaproteobacteria,47FVJ@766|Rickettsiales 766|Rickettsiales E Glutamine amidotransferase domain - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_5622300_3 1173026.Glo7428_1374 2.51e-60 213.0 COG4122@1|root,COG4122@2|Bacteria,1G5FK@1117|Cyanobacteria 1117|Cyanobacteria S O-methyltransferase activity - - - - - - - - - - - - - DYD2_k127_563239_0 429009.Adeg_1474 6.208e-87 294.0 COG1692@1|root,COG1692@2|Bacteria,1TR9P@1239|Firmicutes,24967@186801|Clostridia,42EQD@68295|Thermoanaerobacterales 186801|Clostridia S PFAM Metallophosphoesterase - - - ko:K09769 - - - - ko00000 - - - YmdB DYD2_k127_563239_2 240015.ACP_2834 1.486e-36 144.0 COG0824@1|root,COG0824@2|Bacteria,3Y4WZ@57723|Acidobacteria,2JJIE@204432|Acidobacteriia 204432|Acidobacteriia S PFAM thioesterase superfamily - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 DYD2_k127_563239_1 525904.Tter_1099 2.757e-55 215.0 COG2856@1|root,COG2856@2|Bacteria,2NQY0@2323|unclassified Bacteria 2|Bacteria E Zn peptidase - - - - - - - - - - - - - DYD2_k127_5634288_8 272134.KB731324_gene1704 1.232e-06 53.0 COG1487@1|root,COG1487@2|Bacteria 2|Bacteria S nuclease activity - - - - - - - - - - - - PIN DYD2_k127_5634288_1 671143.DAMO_2689 5.386e-54 198.0 COG2344@1|root,COG2344@2|Bacteria,2NPI1@2323|unclassified Bacteria 2|Bacteria K Modulates transcription in response to changes in cellular NADH NAD( ) redox state rex GO:0003674,GO:0005488,GO:0005515,GO:0042802 - ko:K01926 - - - - ko00000,ko03000 - - - CoA_binding,Put_DNA-bind_N DYD2_k127_5634288_0 234267.Acid_0320 2.089e-61 223.0 COG0235@1|root,COG0235@2|Bacteria,3Y4E0@57723|Acidobacteria 57723|Acidobacteria G Class II Aldolase and Adducin N-terminal domain - - 4.1.2.17 ko:K01628 ko00051,ko01120,map00051,map01120 - R02262 RC00603,RC00604 ko00000,ko00001,ko01000 - - - Aldolase_II DYD2_k127_5634288_4 1487921.DP68_09955 4.388e-34 135.0 COG4577@1|root,COG4577@2|Bacteria,1VA0E@1239|Firmicutes,24N43@186801|Clostridia,36JRW@31979|Clostridiaceae 186801|Clostridia CQ PFAM microcompartments protein - - - - - - - - - - - - BMC DYD2_k127_5634288_5 234267.Acid_0322 4.453e-29 119.0 COG4576@1|root,COG4576@2|Bacteria 2|Bacteria CQ ethanolamine utilization protein EutN carboxysome structural protein Ccml - - - ko:K04028,ko:K08697 - - - - ko00000 - - - EutN_CcmL DYD2_k127_5634288_6 234267.Acid_0323 2.86e-23 101.0 COG4576@1|root,COG4576@2|Bacteria 2|Bacteria CQ ethanolamine utilization protein EutN carboxysome structural protein Ccml eutN - - ko:K04028 - - - - ko00000 - - - EutN_CcmL DYD2_k127_5634288_7 1519464.HY22_03740 2.359e-08 59.0 COG4576@1|root,COG4576@2|Bacteria,1FFI2@1090|Chlorobi 1090|Chlorobi CQ Ethanolamine utilisation protein EutN/carboxysome - - - ko:K04028 - - - - ko00000 - - - EutN_CcmL DYD2_k127_5634288_2 1267535.KB906767_gene2795 2.355e-44 169.0 COG1704@1|root,COG1704@2|Bacteria,3Y4QG@57723|Acidobacteria,2JJCD@204432|Acidobacteriia 204432|Acidobacteriia S LemA family - - - ko:K03744 - - - - ko00000 - - - LemA DYD2_k127_5634288_3 234267.Acid_0972 8.272e-37 149.0 COG1708@1|root,COG1708@2|Bacteria,3Y7NX@57723|Acidobacteria 57723|Acidobacteria S nucleotidyltransferase activity - - - - - - - - - - - - - DYD2_k127_5637333_0 204669.Acid345_0085 1.318e-87 298.0 COG0774@1|root,COG0774@2|Bacteria,3Y40I@57723|Acidobacteria,2JI1R@204432|Acidobacteriia 204432|Acidobacteriia M Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis lpxC - 3.5.1.108 ko:K02535 ko00540,ko01100,map00540,map01100 M00060 R04587 RC00166,RC00300 ko00000,ko00001,ko00002,ko01000,ko01005 - - - LpxC DYD2_k127_5637333_1 1267535.KB906767_gene5480 2.198e-73 256.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,3Y3X3@57723|Acidobacteria,2JHXN@204432|Acidobacteriia 204432|Acidobacteriia L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 DYD2_k127_5643291_2 309807.SRU_2130 1.418e-33 139.0 COG4365@1|root,COG4365@2|Bacteria,4NGCF@976|Bacteroidetes,1FJ16@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes S Bacillithiol biosynthesis BshC bshC - - ko:K22136 - - - - ko00000 - - - BshC DYD2_k127_5643291_0 1125863.JAFN01000001_gene1971 1.059e-69 248.0 COG0329@1|root,COG0329@2|Bacteria,1MXI1@1224|Proteobacteria 1224|Proteobacteria EM Belongs to the DapA family yagE GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005975,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0019520,GO:0019752,GO:0032787,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0046176,GO:0046395,GO:0047440,GO:0071704,GO:0072329,GO:1901575 4.1.2.28,4.3.3.7 ko:K01714,ko:K22397 ko00040,ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00040,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R01782,R10147 RC00307,RC00572,RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD2_k127_5643291_1 330214.NIDE2777 2.517e-60 222.0 COG0384@1|root,COG0384@2|Bacteria 2|Bacteria S isomerase activity yddE - 5.3.3.17 ko:K06998 ko00405,ko01130,ko02024,map00405,map01130,map02024 M00835 - - ko00000,ko00001,ko00002,ko01000 - - - PhzC-PhzF DYD2_k127_5646647_3 1437425.CSEC_1556 1.688e-24 109.0 COG0438@1|root,COG0438@2|Bacteria,2JGXA@204428|Chlamydiae 204428|Chlamydiae M transferase activity, transferring glycosyl groups - - - - - - - - - - - - - DYD2_k127_5646647_1 1392838.AWNM01000055_gene2879 4.301e-42 172.0 COG0438@1|root,COG0438@2|Bacteria,1MYJ6@1224|Proteobacteria,2VRG3@28216|Betaproteobacteria 28216|Betaproteobacteria M Glycosyl transferase 4-like domain - - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4 DYD2_k127_5646647_0 172088.AUGA01000008_gene983 1.058e-119 406.0 COG0438@1|root,COG0438@2|Bacteria,1R56H@1224|Proteobacteria,2UPT9@28211|Alphaproteobacteria,3K5WV@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - - DYD2_k127_5646647_5 204773.HEAR1125 1.472e-16 89.0 COG0500@1|root,COG2226@2|Bacteria,1N867@1224|Proteobacteria 1224|Proteobacteria Q Nodulation protein S (NodS) - - - - - - - - - - - - Methyltransf_31 DYD2_k127_5646647_2 557598.LHK_02794 1.624e-29 126.0 COG2755@1|root,COG2755@2|Bacteria 2|Bacteria E lipolytic protein G-D-S-L family - - 3.2.1.18 ko:K01186 ko00511,ko00600,ko04142,map00511,map00600,map04142 - R04018 RC00028,RC00077 ko00000,ko00001,ko01000,ko02042 - GH33 - Lipase_GDSL_2 DYD2_k127_5646647_6 316058.RPB_1544 0.0002118 53.0 COG2227@1|root,COG2227@2|Bacteria 2|Bacteria H 3-demethylubiquinone-9 3-O-methyltransferase activity - - - - - - - - - - - - Methyltransf_11,Methyltransf_23 DYD2_k127_5646647_4 1454004.AW11_02516 5.974e-18 93.0 COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,2VHMP@28216|Betaproteobacteria 28216|Betaproteobacteria GM abc transporter tagH_1 - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C DYD2_k127_5646855_0 234267.Acid_5786 3.551e-12 70.0 COG0265@1|root,COG0265@2|Bacteria,3Y2WB@57723|Acidobacteria 57723|Acidobacteria O PFAM peptidase S1 and S6, chymotrypsin Hap - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 DYD2_k127_5651235_3 639282.DEFDS_0128 3.34e-15 81.0 COG1664@1|root,COG1664@2|Bacteria,2GFXX@200930|Deferribacteres 200930|Deferribacteres M Polymer-forming cytoskeletal - - - - - - - - - - - - Bactofilin DYD2_k127_5651235_2 1192034.CAP_4647 8.284e-35 141.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - 2.1.1.180 ko:K18846 - - - - ko00000,ko01000,ko01504,ko03009 - - - Methyltransf_11,Methyltransf_25 DYD2_k127_5651235_1 756067.MicvaDRAFT_3416 2.92e-53 193.0 COG3153@1|root,COG3153@2|Bacteria,1G68Q@1117|Cyanobacteria,1HDVK@1150|Oscillatoriales 1117|Cyanobacteria S PFAM GCN5-related N-acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_10 DYD2_k127_5651235_0 234267.Acid_1709 2.929e-115 377.0 28HGI@1|root,2Z7SC@2|Bacteria,3Y3VE@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_5661346_0 338963.Pcar_1852 6.365e-78 285.0 COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,42N8M@68525|delta/epsilon subdivisions,2WJRT@28221|Deltaproteobacteria,43SXK@69541|Desulfuromonadales 28221|Deltaproteobacteria F Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen nrdJ - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_lgC,Ribonuc_red_lgN,TSCPD DYD2_k127_5692071_2 1121935.AQXX01000063_gene3215 0.0001038 51.0 COG2823@1|root,COG2823@2|Bacteria,1MY8V@1224|Proteobacteria,1S2D4@1236|Gammaproteobacteria 1236|Gammaproteobacteria S bacterial OsmY and nodulation domain - - - ko:K04065 - - - - ko00000 - - - BON DYD2_k127_5692071_1 7668.SPU_006810-tr 2.921e-10 73.0 KOG1306@1|root,KOG1306@2759|Eukaryota,393JM@33154|Opisthokonta,3BMVZ@33208|Metazoa,3D3F0@33213|Bilateria 33208|Metazoa PT Sodium/calcium exchanger protein - - - - - - - - - - - - Calx-beta,Na_Ca_ex DYD2_k127_5692071_0 316067.Geob_0942 4.525e-44 179.0 COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria 1224|Proteobacteria G glucose sorbosone gdhB - 1.1.5.2 ko:K00117 ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130 - R06620 RC00066 ko00000,ko00001,ko01000 - - - CBM_2,GSDH DYD2_k127_5702252_0 926550.CLDAP_07340 9.911e-236 740.0 COG0542@1|root,COG0542@2|Bacteria,2G5QU@200795|Chloroflexi 200795|Chloroflexi O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpB - - ko:K03695 ko04213,map04213 - - - ko00000,ko00001,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N DYD2_k127_5702252_3 1304888.ATWF01000001_gene1113 9.281e-20 95.0 COG0071@1|root,COG0071@2|Bacteria,2GFNR@200930|Deferribacteres 200930|Deferribacteres O Hsp20/alpha crystallin family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD2_k127_5702252_4 498848.TaqDRAFT_4582 3.438e-15 84.0 COG0576@1|root,COG0576@2|Bacteria,1WJGI@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ grpE GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - ko:K03687 - - - - ko00000,ko03029,ko03110 - - - GrpE DYD2_k127_5702252_1 330214.NIDE1378 2.886e-223 704.0 COG0459@1|root,COG0459@2|Bacteria,3J0DA@40117|Nitrospirae 40117|Nitrospirae O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groL GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 DYD2_k127_5702252_2 546271.Selsp_0379 8.792e-47 180.0 COG0542@1|root,COG0542@2|Bacteria,1TPMU@1239|Firmicutes,4H2CB@909932|Negativicutes 909932|Negativicutes O Belongs to the ClpA ClpB family clpC - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N,UVR DYD2_k127_5706030_1 204669.Acid345_0704 9.828e-146 471.0 COG2805@1|root,COG2805@2|Bacteria,3Y316@57723|Acidobacteria,2JIT4@204432|Acidobacteriia 204432|Acidobacteriia NU Type II/IV secretion system protein - - - ko:K02669 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE DYD2_k127_5706030_2 204669.Acid345_4762 9.663e-32 141.0 28N30@1|root,2ZB8S@2|Bacteria,3Y2XH@57723|Acidobacteria,2JI3V@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_5706030_0 1379698.RBG1_1C00001G0804 1.828e-148 479.0 COG0183@1|root,COG0183@2|Bacteria,2NNU9@2323|unclassified Bacteria 2|Bacteria I Belongs to the thiolase family - - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N DYD2_k127_5706030_3 876269.ARWA01000001_gene1519 0.0002007 52.0 2F4UF@1|root,33XGS@2|Bacteria,1R4VV@1224|Proteobacteria,2TSHV@28211|Alphaproteobacteria,3NCKM@45404|Beijerinckiaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_570723_0 748247.AZKH_4122 9.091e-10 61.0 2EKK5@1|root,33EA0@2|Bacteria,1NI6Y@1224|Proteobacteria 1224|Proteobacteria S Putative addiction module component - - - - - - - - - - - - Unstab_antitox DYD2_k127_5718220_0 1123392.AQWL01000005_gene3146 7.102e-263 835.0 COG0392@1|root,COG2898@1|root,COG0392@2|Bacteria,COG2898@2|Bacteria,1MXH9@1224|Proteobacteria,2VK9C@28216|Betaproteobacteria 28216|Betaproteobacteria S Uncharacterised conserved protein (DUF2156) - - 2.3.2.3 ko:K07027,ko:K14205 ko01503,ko02020,ko05150,map01503,map02020,map05150 M00726 - - ko00000,ko00001,ko00002,ko01000,ko01504,ko02000 2.A.1.3.37,4.D.2 - - DUF2156,LPG_synthase_TM DYD2_k127_5718220_1 1218076.BAYB01000030_gene4905 6.254e-44 165.0 COG3946@1|root,COG3946@2|Bacteria,1R7R5@1224|Proteobacteria,2VNFU@28216|Betaproteobacteria,1K2AC@119060|Burkholderiaceae 28216|Betaproteobacteria U PFAM virulence factor family protein - - - - - - - - - - - - VirJ DYD2_k127_5719096_6 1173028.ANKO01000086_gene1 1.917e-15 81.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase DYD2_k127_5719096_2 1173024.KI912151_gene2006 3.957e-48 186.0 COG1020@1|root,COG1020@2|Bacteria,1GIZ1@1117|Cyanobacteria,1JKTB@1189|Stigonemataceae 1117|Cyanobacteria Q Thioesterase domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,PP-binding,Thioesterase DYD2_k127_5719096_5 102129.Lepto7375DRAFT_0332 7.131e-20 102.0 COG3208@1|root,COG3208@2|Bacteria,1G16V@1117|Cyanobacteria,1H9TC@1150|Oscillatoriales 1117|Cyanobacteria Q thioesterase involved in non-ribosomal peptide biosynthesis - - 3.1.2.21 ko:K01071 ko00061,ko01100,map00061,map01100 - R04014,R08157,R08158 RC00014,RC00039 ko00000,ko00001,ko01000,ko01004 - - - Thioesterase DYD2_k127_5719096_4 591159.ACEZ01000045_gene2936 4.004e-21 101.0 COG3208@1|root,COG3208@2|Bacteria,2IEPI@201174|Actinobacteria 201174|Actinobacteria Q Thioesterase involved in non-ribosomal peptide biosynthesis - - 3.1.2.21 ko:K01071 ko00061,ko01100,map00061,map01100 - R04014,R08157,R08158 RC00014,RC00039 ko00000,ko00001,ko01000,ko01004 - - - Thioesterase DYD2_k127_5719096_3 880073.Calab_2556 2.117e-30 122.0 COG3251@1|root,COG3251@2|Bacteria,2NRE2@2323|unclassified Bacteria 2|Bacteria S MbtH-like protein - - - ko:K05375,ko:K09190 ko00261,ko01130,map00261,map01130 M00736 R10880 RC00064,RC00141,RC03296,RC03297,RC03298 ko00000,ko00001,ko00002 - - - MbtH,YqcI_YcgG DYD2_k127_5719096_0 56110.Oscil6304_3232 5.402e-237 770.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H837@1150|Oscillatoriales 1117|Cyanobacteria Q Non-ribosomal peptide synthetase modules and related - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,TauD,Thioesterase DYD2_k127_5719096_1 56110.Oscil6304_3232 8.767e-153 499.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H837@1150|Oscillatoriales 1117|Cyanobacteria Q Non-ribosomal peptide synthetase modules and related - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,TauD,Thioesterase DYD2_k127_5723905_0 247490.KSU1_D0669 1.838e-12 80.0 COG0457@1|root,COG0457@2|Bacteria 247490.KSU1_D0669|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_5725749_3 221288.JH992901_gene4304 3.351e-28 118.0 COG0545@1|root,COG0545@2|Bacteria,1G5T1@1117|Cyanobacteria,1JIIN@1189|Stigonemataceae 1117|Cyanobacteria O FKBP-type peptidyl-prolyl cis-trans isomerase fkpA - 5.2.1.8 ko:K01802,ko:K03772 - - - - ko00000,ko01000,ko03110 - - - FKBP_C DYD2_k127_5725749_0 401526.TcarDRAFT_2158 1.478e-123 406.0 COG1063@1|root,COG1063@2|Bacteria,1U5GN@1239|Firmicutes 1239|Firmicutes E PFAM Alcohol dehydrogenase zinc-binding domain protein - - - - - - - - - - - - ADH_N,ADH_zinc_N DYD2_k127_5725749_1 196367.JNFG01000002_gene2276 5.474e-112 366.0 COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2VJXG@28216|Betaproteobacteria,1KGUX@119060|Burkholderiaceae 28216|Betaproteobacteria G Aldolase - - - - - - - - - - - - Aldolase_II DYD2_k127_5725749_2 1122222.AXWR01000020_gene1995 4.626e-53 194.0 COG0739@1|root,COG0739@2|Bacteria,1WK9B@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus M PFAM Peptidase family M23 - - - ko:K21472 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23 DYD2_k127_5726054_2 1123278.KB893424_gene1789 7.272e-18 87.0 28JIP@1|root,2ZCBM@2|Bacteria 2|Bacteria S S1/P1 Nuclease - - - - - - - - - - - - S1-P1_nuclease DYD2_k127_5726054_6 1396418.BATQ01000183_gene975 2.399e-05 50.0 2A529@1|root,30TQK@2|Bacteria,46WGF@74201|Verrucomicrobia 74201|Verrucomicrobia S S1/P1 Nuclease - - - - - - - - - - - - S1-P1_nuclease DYD2_k127_5726054_5 1123276.KB893250_gene335 2.045e-10 68.0 28JIP@1|root,2ZCBM@2|Bacteria 2|Bacteria S S1/P1 Nuclease - - - - - - - - - - - - S1-P1_nuclease DYD2_k127_5726054_7 1038860.AXAP01000033_gene4424 7.543e-05 51.0 COG0784@1|root,COG3850@1|root,COG4191@1|root,COG0784@2|Bacteria,COG3850@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JW72@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HAMP,HATPase_c,HisKA,MASE4,PAS_3,PAS_4,Response_reg,dCache_1 DYD2_k127_5726054_4 1108045.GORHZ_084_00430 2.162e-12 73.0 COG0500@1|root,COG2226@2|Bacteria,2GNTH@201174|Actinobacteria,4GEP0@85026|Gordoniaceae 201174|Actinobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD2_k127_5726054_1 105559.Nwat_3192 5.692e-31 123.0 COG3549@1|root,COG3549@2|Bacteria 105559.Nwat_3192|- S RelE-like toxin of type II toxin-antitoxin system HigB - - - ko:K07334 - - - - ko00000,ko02048 - - - - DYD2_k127_5726054_0 1207063.P24_15876 6.967e-37 143.0 COG3093@1|root,COG3093@2|Bacteria,1N6H7@1224|Proteobacteria,2UBSK@28211|Alphaproteobacteria,2JXFQ@204441|Rhodospirillales 204441|Rhodospirillales K Helix-turn-helix - - - ko:K21498 - - - - ko00000,ko02048 - - - HTH_3 DYD2_k127_5726054_3 177437.HRM2_48070 2.811e-14 83.0 COG0582@1|root,COG0582@2|Bacteria,1MVZB@1224|Proteobacteria,42T3Q@68525|delta/epsilon subdivisions,2WPUB@28221|Deltaproteobacteria,2MKDP@213118|Desulfobacterales 28221|Deltaproteobacteria L Phage integrase, N-terminal SAM-like domain - - - - - - - - - - - - Phage_integrase DYD2_k127_5726054_8 1463920.JOGB01000021_gene2134 0.0007487 45.0 COG1273@1|root,COG1273@2|Bacteria,2GJMU@201174|Actinobacteria 201174|Actinobacteria L With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD - - - ko:K10979 ko03450,map03450 - - - ko00000,ko00001,ko03400 - - - Ku DYD2_k127_574451_3 1379698.RBG1_1C00001G1052 4.965e-40 159.0 COG0852@1|root,COG0852@2|Bacteria,2NPN6@2323|unclassified Bacteria 2|Bacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoC GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 ko:K00332 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - iAF987.Gmet_3353 Complex1_30kDa DYD2_k127_574451_7 395493.BegalDRAFT_1852 5.464e-31 123.0 COG0254@1|root,COG0254@2|Bacteria,1MZ69@1224|Proteobacteria,1SCMH@1236|Gammaproteobacteria,461AF@72273|Thiotrichales 72273|Thiotrichales J Binds the 23S rRNA rpmE - - ko:K02909 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L31 DYD2_k127_574451_1 1340493.JNIF01000004_gene264 3.836e-69 249.0 COG3872@1|root,COG3872@2|Bacteria,3Y66K@57723|Acidobacteria 57723|Acidobacteria S Protein of unknown function (DUF1385) - - - - - - - - - - - - DUF1385 DYD2_k127_574451_0 240015.ACP_2651 1.775e-149 480.0 COG0216@1|root,COG0216@2|Bacteria,3Y2N9@57723|Acidobacteria,2JHYH@204432|Acidobacteriia 204432|Acidobacteriia J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA prfA - - ko:K02835 - - - - ko00000,ko03012 - - - PCRF,RF-1 DYD2_k127_574451_6 483219.LILAB_20535 4.335e-31 131.0 COG0406@1|root,COG0406@2|Bacteria,1NPC4@1224|Proteobacteria,434AF@68525|delta/epsilon subdivisions,2X23S@28221|Deltaproteobacteria,2YVSR@29|Myxococcales 28221|Deltaproteobacteria G Belongs to the phosphoglycerate mutase family - - 5.4.2.12 ko:K15634 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000 - - - His_Phos_1 DYD2_k127_574451_5 886377.Murru_0046 6.826e-38 147.0 COG2010@1|root,COG2010@2|Bacteria,4NSE3@976|Bacteroidetes,1I28K@117743|Flavobacteriia 976|Bacteroidetes C Haem-binding domain - - - - - - - - - - - - Haem_bd DYD2_k127_574451_4 886293.Sinac_3998 1.143e-38 152.0 COG3485@1|root,COG3485@2|Bacteria 2|Bacteria Q protocatechuate 3,4-dioxygenase activity - - 1.13.11.3 ko:K00449 ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220 - R01631,R03549 RC00388,RC00953 br01602,ko00000,ko00001,ko01000 - - - Dioxygenase_C DYD2_k127_574451_2 1267535.KB906767_gene5125 2.493e-48 182.0 COG1595@1|root,COG1595@2|Bacteria,3Y7Q6@57723|Acidobacteria 57723|Acidobacteria K DNA-templated transcription, initiation - - - - - - - - - - - - - DYD2_k127_5753302_0 986075.CathTA2_0608 6.938e-89 298.0 COG4948@1|root,COG4948@2|Bacteria,1TQMS@1239|Firmicutes,4HBMX@91061|Bacilli 91061|Bacilli H Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) menC - 4.2.1.113 ko:K02549 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116 R04031 RC01053 ko00000,ko00001,ko00002,ko01000 - - - MR_MLE_C,MR_MLE_N DYD2_k127_5753302_3 293826.Amet_2631 3.172e-18 96.0 COG1737@1|root,COG1737@2|Bacteria,1TP7H@1239|Firmicutes,248ZD@186801|Clostridia,36DZB@31979|Clostridiaceae 186801|Clostridia K transcriptional regulator, RpiR family - - - - - - - - - - - - HTH_6,SIS DYD2_k127_5753302_2 1267534.KB906754_gene3444 5.189e-34 136.0 COG4319@1|root,COG4319@2|Bacteria,3Y5FP@57723|Acidobacteria,2JN7M@204432|Acidobacteriia 204432|Acidobacteriia S SnoaL-like domain - - - - - - - - - - - - DUF4440 DYD2_k127_5753302_1 234267.Acid_7338 1.292e-47 177.0 COG1228@1|root,COG1228@2|Bacteria,3Y39J@57723|Acidobacteria 57723|Acidobacteria Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_5761126_2 204669.Acid345_4284 1.741e-113 377.0 COG0577@1|root,COG0577@2|Bacteria,3Y31H@57723|Acidobacteria,2JITF@204432|Acidobacteriia 204432|Acidobacteriia V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_5761126_6 401053.AciPR4_3382 2.101e-07 55.0 COG0577@1|root,COG0577@2|Bacteria,3Y3V2@57723|Acidobacteria,2JI74@204432|Acidobacteriia 204432|Acidobacteriia V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_5761126_5 1183438.GKIL_4183 1.15e-09 60.0 COG0577@1|root,COG0577@2|Bacteria 2|Bacteria V efflux transmembrane transporter activity - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_5761126_4 215803.DB30_8370 4.444e-10 65.0 COG0577@1|root,COG0577@2|Bacteria,1NREW@1224|Proteobacteria,433ZM@68525|delta/epsilon subdivisions,2X48T@28221|Deltaproteobacteria,2YYI5@29|Myxococcales 28221|Deltaproteobacteria V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_5761126_1 251221.35211765 4.046e-211 683.0 COG0577@1|root,COG0577@2|Bacteria 2|Bacteria V efflux transmembrane transporter activity - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_5761126_3 886293.Sinac_3502 3.342e-94 321.0 COG0500@1|root,COG2226@2|Bacteria,2IXEP@203682|Planctomycetes 203682|Planctomycetes Q O-methyltransferase - - - - - - - - - - - - Dimerisation2,Methyltransf_2 DYD2_k127_5761126_0 234267.Acid_0759 3.422e-292 924.0 COG1506@1|root,COG1506@2|Bacteria 2|Bacteria E serine-type peptidase activity - - - - - - - - - - - - DUF2920,Peptidase_S9 DYD2_k127_5761255_2 335543.Sfum_3053 4.025e-55 198.0 COG2234@1|root,COG2234@2|Bacteria,1MXZS@1224|Proteobacteria,42S82@68525|delta/epsilon subdivisions,2WNUR@28221|Deltaproteobacteria,2MR3S@213462|Syntrophobacterales 28221|Deltaproteobacteria S PFAM peptidase M28 - - - - - - - - - - - - Peptidase_M28 DYD2_k127_5761255_0 234267.Acid_2600 8.35e-110 364.0 COG2404@1|root,COG2404@2|Bacteria,3Y98M@57723|Acidobacteria 57723|Acidobacteria S hydrolase activity, acting on ester bonds - - - - - - - - - - - - - DYD2_k127_5761255_3 1279009.ADICEAN_03474 9.066e-08 61.0 COG0526@1|root,COG0526@2|Bacteria,4NEX3@976|Bacteroidetes,47JZP@768503|Cytophagia 976|Bacteroidetes O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen ccmG - - - - - - - - - - - AhpC-TSA,DUF4369 DYD2_k127_5761255_1 156889.Mmc1_0245 2.239e-56 212.0 COG0785@1|root,COG0785@2|Bacteria,1RCP7@1224|Proteobacteria,2TSAI@28211|Alphaproteobacteria 28211|Alphaproteobacteria O Cytochrome c biogenesis protein ccdA - - ko:K06196 - - - - ko00000,ko02000 5.A.1.2 - - DsbD DYD2_k127_5766368_1 189753.AXAS01000041_gene2534 2.194e-83 287.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_5766368_0 189753.AXAS01000041_gene2534 9.264e-88 300.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_5775858_0 1121920.AUAU01000009_gene1854 1.881e-108 356.0 COG4262@1|root,COG4262@2|Bacteria,3Y3M2@57723|Acidobacteria 57723|Acidobacteria S Spermine/spermidine synthase domain - - 2.5.1.16 ko:K00797 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R01920,R02869,R08359 RC00021,RC00053 ko00000,ko00001,ko00002,ko01000 - - - Spermine_synth DYD2_k127_5775858_1 903818.KI912268_gene729 1.261e-100 337.0 COG1232@1|root,COG1232@2|Bacteria,3Y3KX@57723|Acidobacteria 57723|Acidobacteria H NAD(P)-binding Rossmann-like domain - - - - - - - - - - - - Amino_oxidase,NAD_binding_8 DYD2_k127_5776782_2 485913.Krac_7300 1.309e-47 179.0 COG4977@1|root,COG4977@2|Bacteria,2G8UD@200795|Chloroflexi 200795|Chloroflexi K PFAM helix-turn-helix- domain containing protein AraC type - - - - - - - - - - - - HTH_18 DYD2_k127_5776782_1 449447.MAE_12770 3.107e-55 197.0 COG0824@1|root,COG0824@2|Bacteria,1GDHP@1117|Cyanobacteria 1117|Cyanobacteria S Thioesterase-like superfamily - - - ko:K15315 ko01059,map01059 - R11436 RC00039,RC03437 ko00000,ko00001,ko01008 - - - 4HBT_2 DYD2_k127_5776782_0 28072.Nos7524_5243 4.123e-207 664.0 COG1028@1|root,COG3321@1|root,COG1028@2|Bacteria,COG3321@2|Bacteria,1G1IB@1117|Cyanobacteria,1HJKD@1161|Nostocales 2|Bacteria IQ TIGRFAM Polyketide-type polyunsaturated fatty acid synthase, PfaA - - - ko:K15314 ko01059,ko01130,map01059,map01130 M00824,M00825 R11435 - ko00000,ko00001,ko00002,ko01008 - - - Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,ketoacyl-synt DYD2_k127_578156_0 234267.Acid_5454 1.028e-59 217.0 COG0511@1|root,COG1413@1|root,COG0511@2|Bacteria,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity pcmV - 2.3.1.12 ko:K00627,ko:K02160,ko:K07402 ko00010,ko00020,ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00010,map00020,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00307,M00376 R00209,R00742,R02569 RC00004,RC00040,RC00367,RC02742,RC02857 br01601,ko00000,ko00001,ko00002,ko01000 - - - Biotin_lipoyl,MDMPI_C,MDMPI_N,XdhC_C,XdhC_CoxI DYD2_k127_578156_1 1201290.M902_1283 1.464e-41 160.0 COG2322@1|root,COG2322@2|Bacteria,1N3YI@1224|Proteobacteria,430G9@68525|delta/epsilon subdivisions,2WVW0@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Protein of unknown function (DUF420) - - - ko:K08976 - - - - ko00000 - - - DUF420 DYD2_k127_5804130_1 204669.Acid345_3349 6.833e-58 207.0 COG0297@1|root,COG0297@2|Bacteria,3Y3IH@57723|Acidobacteria,2JHNU@204432|Acidobacteriia 204432|Acidobacteriia G Synthesizes alpha-1,4-glucan chains using ADP-glucose glgA - 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5,Glycos_transf_1 DYD2_k127_5804130_2 765912.Thimo_2083 1.255e-36 141.0 COG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,1S5WR@1236|Gammaproteobacteria,1WY87@135613|Chromatiales 135613|Chromatiales O Belongs to the thioredoxin family - - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin DYD2_k127_5804130_0 1443122.Z958_10690 1.532e-95 320.0 COG0104@1|root,COG0104@2|Bacteria,1TQ4C@1239|Firmicutes,247RN@186801|Clostridia,36EP1@31979|Clostridiaceae 186801|Clostridia F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA - 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt DYD2_k127_581002_1 1121428.DESHY_120030___1 3.904e-54 198.0 COG0218@1|root,COG0218@2|Bacteria,1TSPW@1239|Firmicutes,24836@186801|Clostridia,261YZ@186807|Peptococcaceae 186801|Clostridia D Necessary for normal cell division and for the maintenance of normal septation engB - - ko:K03978 - - - - ko00000,ko03036 - - - MMR_HSR1 DYD2_k127_581002_2 1267535.KB906767_gene2786 2.14e-45 170.0 2DB97@1|root,32TX2@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_581002_0 682795.AciX8_3208 3.883e-242 760.0 COG0466@1|root,COG0466@2|Bacteria,3Y3DI@57723|Acidobacteria,2JIB4@204432|Acidobacteriia 204432|Acidobacteriia O ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner - - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA,LON_substr_bdg,Lon_C DYD2_k127_5825319_0 1380386.JIAW01000030_gene3590 1.506e-94 328.0 COG1178@1|root,COG1178@2|Bacteria,2GKDH@201174|Actinobacteria,2392Z@1762|Mycobacteriaceae 201174|Actinobacteria P Binding-protein-dependent transport system inner membrane component - - - ko:K02011,ko:K02063 ko02010,map02010 M00190,M00191 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10,3.A.1.19 - - BPD_transp_1,SBP_bac_6 DYD2_k127_5825995_1 886293.Sinac_0625 1.555e-10 72.0 COG0612@1|root,COG0612@2|Bacteria,2IYKK@203682|Planctomycetes 2|Bacteria S PFAM Peptidase M16 inactive domain pqqL - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_5825995_0 234267.Acid_7345 1.29e-65 232.0 COG0500@1|root,COG2226@2|Bacteria,3Y44I@57723|Acidobacteria 57723|Acidobacteria H Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) menG - 2.1.1.163,2.1.1.201 ko:K03183 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116,M00117 R04990,R04993,R06859,R08774,R09736 RC00003,RC01253,RC01662 ko00000,ko00001,ko00002,ko01000 - - - Ubie_methyltran DYD2_k127_5832791_2 1174528.JH992893_gene5692 2.473e-36 141.0 COG0318@1|root,COG3321@1|root,COG0318@2|Bacteria,COG3321@2|Bacteria,1FZXE@1117|Cyanobacteria,1JKIU@1189|Stigonemataceae 1117|Cyanobacteria IQ Phosphopantetheine attachment site - - - - - - - - - - - - AMP-binding,Abhydrolase_1,Acyl_transf_1,Hydrolase_4,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,Sulfotransfer_3,ketoacyl-synt DYD2_k127_5832791_0 448385.sce5740 1.637e-122 421.0 COG2234@1|root,COG2234@2|Bacteria,1R56X@1224|Proteobacteria,43823@68525|delta/epsilon subdivisions,2X3C5@28221|Deltaproteobacteria,2YVD0@29|Myxococcales 28221|Deltaproteobacteria S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 DYD2_k127_5832791_1 251221.35211983 4.681e-68 241.0 COG0577@1|root,COG0577@2|Bacteria 2|Bacteria V efflux transmembrane transporter activity - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_5837513_2 323848.Nmul_A0701 1.18e-55 199.0 COG0694@1|root,COG0694@2|Bacteria,1MVQ1@1224|Proteobacteria,2VQ83@28216|Betaproteobacteria,371PF@32003|Nitrosomonadales 28216|Betaproteobacteria O Scaffold protein Nfu/NifU N terminal - - - - - - - - - - - - Nfu_N,NifU DYD2_k127_5837513_0 401053.AciPR4_3379 1.122e-126 417.0 COG0438@1|root,COG0438@2|Bacteria,3Y3CI@57723|Acidobacteria,2JKK7@204432|Acidobacteriia 204432|Acidobacteriia M glycosyl transferase group 1 - - - ko:K00754 - - - - ko00000,ko01000 - GT4 - Glyco_transf_4,Glycos_transf_1 DYD2_k127_5837513_1 234267.Acid_3898 2.132e-116 390.0 COG2304@1|root,COG2304@2|Bacteria,3Y3DR@57723|Acidobacteria 2|Bacteria S oxidoreductase activity - - - - - - - - - - - - Big_2,VWA,VWA_2 DYD2_k127_5841626_2 1120949.KB903294_gene4037 1.486e-24 111.0 COG0406@1|root,COG0406@2|Bacteria 2|Bacteria G alpha-ribazole phosphatase activity lpqD GO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009628,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036293,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.4.2.11 ko:K01834 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - His_Phos_1 DYD2_k127_5841626_0 234267.Acid_6651 6.713e-187 601.0 COG0154@1|root,COG0154@2|Bacteria,3Y3E5@57723|Acidobacteria 57723|Acidobacteria J PFAM Amidase - - - - - - - - - - - - Amidase DYD2_k127_5841626_1 1487923.DP73_06780 1.128e-52 198.0 COG0643@1|root,COG2198@1|root,COG0643@2|Bacteria,COG2198@2|Bacteria,1TPMS@1239|Firmicutes,24858@186801|Clostridia,2603B@186807|Peptococcaceae 186801|Clostridia NT Signal transducing histidine kinase homodimeric cheA - 2.7.13.3 ko:K03407 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - CheW,H-kinase_dim,HATPase_c,Hpt,P2 DYD2_k127_5853691_2 278963.ATWD01000001_gene1715 6.144e-13 69.0 COG4911@1|root,COG4911@2|Bacteria,3Y53S@57723|Acidobacteria,2JJUY@204432|Acidobacteriia 204432|Acidobacteriia S Uncharacterized conserved protein (DUF2203) - - - - - - - - - - - - DUF2203 DYD2_k127_5853691_0 671143.DAMO_2336 1.152e-42 174.0 COG1293@1|root,COG1293@2|Bacteria,2NP83@2323|unclassified Bacteria 2|Bacteria K Fibronectin-binding protein A N-terminus (FbpA) - - - - - - - - - - - - DUF814,FbpA DYD2_k127_5853691_1 1267535.KB906767_gene5149 3.88e-39 154.0 COG1652@1|root,COG1652@2|Bacteria,3Y84E@57723|Acidobacteria 57723|Acidobacteria S Lysin motif - - - - - - - - - - - - LysM DYD2_k127_5858246_0 1121920.AUAU01000009_gene1864 7.881e-46 184.0 COG0457@1|root,COG0457@2|Bacteria,3Y5YE@57723|Acidobacteria 57723|Acidobacteria S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_5858246_1 886293.Sinac_1403 9.481e-32 126.0 COG1146@1|root,COG1146@2|Bacteria,2J013@203682|Planctomycetes 203682|Planctomycetes C Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions - - - ko:K05524 - - - - ko00000 - - - DUF3470,Fer4 DYD2_k127_5860594_2 1121405.dsmv_0741 5.695e-78 264.0 COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,42MDV@68525|delta/epsilon subdivisions,2WJ3T@28221|Deltaproteobacteria,2MHMX@213118|Desulfobacterales 28221|Deltaproteobacteria M Belongs to the UDP-glucose GDP-mannose dehydrogenase family - - 1.1.1.22 ko:K00012 ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 M00014,M00129,M00361,M00362 R00286 RC00291 ko00000,ko00001,ko00002,ko01000 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N DYD2_k127_5860594_0 1232410.KI421421_gene3368 3.841e-179 567.0 COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,42MI8@68525|delta/epsilon subdivisions,2WJDT@28221|Deltaproteobacteria,43SIZ@69541|Desulfuromonadales 28221|Deltaproteobacteria M PFAM NAD-dependent epimerase dehydratase uxs - 4.1.1.35,4.2.1.46 ko:K01710,ko:K08678 ko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00520,map00521,map00523,map00525,map01055,map01100,map01130 M00361,M00793 R01384,R06513 RC00402,RC00508 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd DYD2_k127_5860594_1 1173021.ALWA01000038_gene1704 5.75e-105 358.0 COG1208@1|root,COG1208@2|Bacteria,1G00Y@1117|Cyanobacteria 1117|Cyanobacteria JM Glucose-1-phosphate cytidylyltransferase rfbF - 2.7.7.33 ko:K00978 ko00500,ko00520,ko01100,map00500,map00520,map01100 - R00956 RC00002 ko00000,ko00001,ko01000 - - - NTP_transferase DYD2_k127_5862259_1 1244869.H261_08183 1.529e-60 223.0 COG0501@1|root,COG0750@1|root,COG0501@2|Bacteria,COG0750@2|Bacteria,1RH15@1224|Proteobacteria,2U9QN@28211|Alphaproteobacteria 28211|Alphaproteobacteria M Peptidase M48 - - - - - - - - - - - - PDZ_2,Peptidase_M48 DYD2_k127_5862259_0 338966.Ppro_0219 1.842e-105 353.0 COG2378@1|root,COG2378@2|Bacteria,1R65H@1224|Proteobacteria,42PYW@68525|delta/epsilon subdivisions 1224|Proteobacteria K HTH domain - - - - - - - - - - - - HTH_11,WYL DYD2_k127_5862259_2 1123367.C666_13400 4.004e-33 139.0 2DC2H@1|root,2ZCMU@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5864373_1 234267.Acid_1121 1.254e-09 68.0 2BRBT@1|root,32KAC@2|Bacteria,3Y4U0@57723|Acidobacteria 57723|Acidobacteria S Yip1 domain - - - - - - - - - - - - Yip1 DYD2_k127_5864373_0 204669.Acid345_4376 6.612e-101 342.0 COG0577@1|root,COG0577@2|Bacteria,3Y3XI@57723|Acidobacteria,2JMFF@204432|Acidobacteriia 204432|Acidobacteriia V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_5865524_3 1354300.AUQY01000002_gene1026 0.000126 52.0 COG0457@1|root,COG0457@2|Bacteria,1UYZH@1239|Firmicutes,24BU9@186801|Clostridia,22IQ6@1570339|Peptoniphilaceae 186801|Clostridia S TPR repeat - - - - - - - - - - - - TPR_1,TPR_16,TPR_2,TPR_8 DYD2_k127_5865524_1 525904.Tter_1437 7.717e-96 322.0 COG0345@1|root,COG0345@2|Bacteria,2NPIR@2323|unclassified Bacteria 2|Bacteria E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline proC - 1.5.1.2 ko:K00286 ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230 M00015 R01248,R01251,R03291,R03293 RC00054,RC00083 ko00000,ko00001,ko00002,ko01000 - - - F420_oxidored,P5CR_dimer DYD2_k127_5865524_0 1382359.JIAL01000001_gene2184 5.376e-118 396.0 COG0527@1|root,COG0527@2|Bacteria,3Y34W@57723|Acidobacteria,2JHV2@204432|Acidobacteriia 204432|Acidobacteriia E Belongs to the aspartokinase family - - 2.7.2.4 ko:K00928 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R00480 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase DYD2_k127_5865524_2 204669.Acid345_1040 1.498e-38 150.0 COG0624@1|root,COG0624@2|Bacteria,3Y2K0@57723|Acidobacteria,2JIEY@204432|Acidobacteriia 204432|Acidobacteriia E PFAM peptidase - - 3.5.1.16 ko:K01438 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R00669,R09107 RC00064,RC00300 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20 DYD2_k127_5867377_0 1123229.AUBC01000003_gene2162 1.707e-55 203.0 COG4166@1|root,COG4166@2|Bacteria,1P91R@1224|Proteobacteria,2TT6P@28211|Alphaproteobacteria,3K2RS@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle oppA - - ko:K02035,ko:K15580 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00239,M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - SBP_bac_5 DYD2_k127_5867377_3 426355.Mrad2831_3549 3.502e-16 89.0 COG5281@1|root,COG5281@2|Bacteria,1NZ1M@1224|Proteobacteria,2TS08@28211|Alphaproteobacteria,1JTA7@119045|Methylobacteriaceae 28211|Alphaproteobacteria D sister chromatid segregation - - - - - - - - - - - - - DYD2_k127_5867377_4 1033802.SSPSH_002752 4.446e-05 54.0 COG5281@1|root,COG5281@2|Bacteria,1NZ1M@1224|Proteobacteria,1S7A2@1236|Gammaproteobacteria 1236|Gammaproteobacteria D sister chromatid segregation - - - - - - - - - - - - - DYD2_k127_5867377_2 1265313.HRUBRA_02707 1.132e-32 138.0 COG5281@1|root,COG5281@2|Bacteria,1NZ1M@1224|Proteobacteria,1S4VY@1236|Gammaproteobacteria,1JAMV@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria D sister chromatid segregation - - - - - - - - - - - - - DYD2_k127_5867377_1 159087.Daro_1734 1.393e-52 190.0 COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,2VIDE@28216|Betaproteobacteria,2KUWJ@206389|Rhodocyclales 206389|Rhodocyclales L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA - 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 DYD2_k127_5872713_0 240015.ACP_2334 9.785e-112 366.0 COG0436@1|root,COG0436@2|Bacteria,3Y64P@57723|Acidobacteria,2JMB5@204432|Acidobacteriia 204432|Acidobacteriia E Cys/Met metabolism PLP-dependent enzyme - - 2.6.1.1 ko:K00812 ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00355,R00694,R00734,R00896,R02433,R02619,R05052 RC00006 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 DYD2_k127_5872713_1 671143.DAMO_2184 9.423e-69 248.0 COG0611@1|root,COG0611@2|Bacteria,2NP8J@2323|unclassified Bacteria 2|Bacteria H Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 thiL GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009030,GO:0009058,GO:0009108,GO:0009110,GO:0009228,GO:0009229,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0040007,GO:0042357,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.16 ko:K00946,ko:K07123 ko00730,ko01100,map00730,map01100 M00127 R00617 RC00002 ko00000,ko00001,ko00002,ko01000 - - iNJ661.Rv2977c,iSFV_1184.SFV_0382,iYO844.BSU05900 AIRS,AIRS_C DYD2_k127_5872713_2 1379698.RBG1_1C00001G0844 2.205e-58 208.0 COG0215@1|root,COG0215@2|Bacteria,2NNP0@2323|unclassified Bacteria 2|Bacteria J Belongs to the class-I aminoacyl-tRNA synthetase family cysS GO:0000166,GO:0001871,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010125,GO:0010126,GO:0010467,GO:0016020,GO:0016070,GO:0016137,GO:0016138,GO:0016874,GO:0016875,GO:0016879,GO:0016880,GO:0017076,GO:0019538,GO:0019752,GO:0030246,GO:0030247,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035446,GO:0035639,GO:0036094,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:2001065 6.1.1.16,6.3.1.13 ko:K01883,ko:K15526 ko00970,map00970 M00359,M00360 R03650 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - iECUMN_1333.ECUMN_0566,iJN746.PP_2905,iNJ661.Rv2130c DALR_2,tRNA-synt_1e,tRNA-synt_1g DYD2_k127_5876601_1 204669.Acid345_2805 1.034e-47 192.0 COG2911@1|root,COG2911@2|Bacteria,3Y3A6@57723|Acidobacteria,2JHS8@204432|Acidobacteriia 204432|Acidobacteriia M TamB, inner membrane protein subunit of TAM complex - - - ko:K09800 - - - - ko00000,ko02000 - - - TamB DYD2_k127_5876601_0 204669.Acid345_2804 5.398e-64 250.0 COG4775@1|root,COG4775@2|Bacteria,3Y2RF@57723|Acidobacteria,2JHK5@204432|Acidobacteriia 57723|Acidobacteria M surface antigen variable number - - - - - - - - - - - - Bac_surface_Ag,POTRA DYD2_k127_5885990_0 234267.Acid_2365 1.645e-275 863.0 COG0841@1|root,COG1538@1|root,COG0841@2|Bacteria,COG1538@2|Bacteria,3Y6DS@57723|Acidobacteria 57723|Acidobacteria V AcrB/AcrD/AcrF family - - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran,OEP DYD2_k127_5885990_1 234267.Acid_2365 4.028e-93 327.0 COG0841@1|root,COG1538@1|root,COG0841@2|Bacteria,COG1538@2|Bacteria,3Y6DS@57723|Acidobacteria 57723|Acidobacteria V AcrB/AcrD/AcrF family - - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran,OEP DYD2_k127_5885990_4 261292.Nit79A3_1925 1.329e-08 66.0 COG3568@1|root,COG3568@2|Bacteria,1MVN7@1224|Proteobacteria,2VJYW@28216|Betaproteobacteria,372S8@32003|Nitrosomonadales 28216|Betaproteobacteria L PFAM Endonuclease exonuclease phosphatase - - - - - - - - - - - - Exo_endo_phos DYD2_k127_5885990_2 1321778.HMPREF1982_04528 2.188e-61 218.0 COG1247@1|root,COG1247@2|Bacteria,1VJ3A@1239|Firmicutes,25GYK@186801|Clostridia 186801|Clostridia M Acetyltransferase (GNAT) family - - - - - - - - - - - - Acetyltransf_1 DYD2_k127_5885990_3 384676.PSEEN1833 1.106e-24 106.0 COG2944@1|root,COG2944@2|Bacteria,1N5H0@1224|Proteobacteria,1SEZI@1236|Gammaproteobacteria 1236|Gammaproteobacteria K transcriptional regulator - - - ko:K07726 - - - - ko00000,ko03000 - - - HTH_3,HTH_31 DYD2_k127_5885990_5 28072.Nos7524_5513 5.972e-07 53.0 COG2303@1|root,COG2303@2|Bacteria,1G2DQ@1117|Cyanobacteria,1HQ1V@1161|Nostocales 1117|Cyanobacteria E PFAM GMC oxidoreductase - - - - - - - - - - - - GMC_oxred_C,GMC_oxred_N DYD2_k127_5891748_2 452637.Oter_3715 8.985e-53 195.0 COG3132@1|root,COG3132@2|Bacteria,46VIH@74201|Verrucomicrobia,3K85I@414999|Opitutae 414999|Opitutae S Belongs to the UPF0502 family - - - ko:K09915 - - - - ko00000 - - - DUF480 DYD2_k127_5891748_0 436308.Nmar_0657 6.309e-147 479.0 COG1262@1|root,arCOG03517@2157|Archaea,41T1B@651137|Thaumarchaeota 651137|Thaumarchaeota S DinB superfamily - - - - - - - - - - - - DinB_2,FGE-sulfatase DYD2_k127_5891748_4 1340493.JNIF01000003_gene2831 3.681e-21 98.0 COG0415@1|root,COG0415@2|Bacteria,3Y31R@57723|Acidobacteria 57723|Acidobacteria L PFAM DNA photolyase, FAD-binding - - 4.1.99.3 ko:K01669 - - - - ko00000,ko01000,ko03400 - - - DNA_photolyase,FAD_binding_7 DYD2_k127_5891748_1 35841.BT1A1_1093 4.148e-93 316.0 COG0709@1|root,COG0709@2|Bacteria,1TQCJ@1239|Firmicutes,4HB6P@91061|Bacilli,1ZCAH@1386|Bacillus 91061|Bacilli E Synthesizes selenophosphate from selenide and ATP selD - 2.7.9.3 ko:K01008 ko00450,ko01100,map00450,map01100 - R03595 RC00002,RC02878 ko00000,ko00001,ko01000,ko03016 - - - AIRS,AIRS_C DYD2_k127_5891748_3 1267535.KB906767_gene1253 4.35e-29 120.0 COG1801@1|root,COG1801@2|Bacteria 2|Bacteria L Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD2_k127_5892537_1 204669.Acid345_4390 4.654e-41 155.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria,3Y69R@57723|Acidobacteria,2JKIQ@204432|Acidobacteriia 204432|Acidobacteriia KLT Protein kinase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PD40,Pkinase DYD2_k127_5892537_0 335543.Sfum_3634 4.657e-82 284.0 COG2870@1|root,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,42MBC@68525|delta/epsilon subdivisions,2WIKU@28221|Deltaproteobacteria,2MQGF@213462|Syntrophobacterales 28221|Deltaproteobacteria H Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose hldE GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 ko:K03272 ko00540,ko01100,map00540,map01100 M00064 R05644,R05646 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - iAF987.Gmet_0922 CTP_transf_like,PfkB DYD2_k127_5892537_2 234267.Acid_2356 1.297e-34 147.0 COG0859@1|root,COG0859@2|Bacteria,3Y616@57723|Acidobacteria 57723|Acidobacteria M Glycosyltransferase family 9 (heptosyltransferase) - - - ko:K02849 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 DYD2_k127_5892537_3 1267535.KB906767_gene1432 1.802e-21 95.0 COG2835@1|root,COG2835@2|Bacteria,3Y8VE@57723|Acidobacteria 57723|Acidobacteria S Trm112p-like protein - - - ko:K09791 - - - - ko00000 - - - Trm112p DYD2_k127_5892892_1 1121935.AQXX01000063_gene3214 3.13e-07 56.0 2DNS2@1|root,32YVY@2|Bacteria,1N9QQ@1224|Proteobacteria,1SBUW@1236|Gammaproteobacteria,1XMR6@135619|Oceanospirillales 135619|Oceanospirillales - - - - - - - - - - - - - - - DYD2_k127_5892892_0 1123393.KB891316_gene1648 4.876e-68 236.0 COG2193@1|root,COG2193@2|Bacteria,1RAQ8@1224|Proteobacteria,2VQHR@28216|Betaproteobacteria,1KRVM@119069|Hydrogenophilales 119069|Hydrogenophilales P Ferritin-like domain - - - - - - - - - - - - Ferritin DYD2_k127_5895913_0 204669.Acid345_1454 4.023e-229 721.0 COG1884@1|root,COG1884@2|Bacteria,3Y2PQ@57723|Acidobacteria,2JHJN@204432|Acidobacteriia 204432|Acidobacteriia I Methylmalonyl-CoA mutase - - 5.4.99.2 ko:K01848 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00375,M00376,M00741 R00833 RC00395 ko00000,ko00001,ko00002,ko01000 - - - MM_CoA_mutase DYD2_k127_5895913_1 404380.Gbem_1567 1.798e-56 201.0 COG1109@1|root,COG1109@2|Bacteria,1QUGD@1224|Proteobacteria,43BUU@68525|delta/epsilon subdivisions,2WKYP@28221|Deltaproteobacteria,43STX@69541|Desulfuromonadales 28221|Deltaproteobacteria G phosphoglucomutase phosphomannomutase alpha beta alpha domain I - - 5.4.2.2,5.4.2.8 ko:K01835,ko:K01840 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114,M00549 R00959,R01057,R01818,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV DYD2_k127_5903411_3 1121920.AUAU01000014_gene2821 3.602e-05 48.0 COG0810@1|root,COG0810@2|Bacteria,3Y5QN@57723|Acidobacteria 57723|Acidobacteria M TIGRFAM TonB family protein - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C DYD2_k127_5903411_2 96561.Dole_2371 2.514e-08 65.0 COG0664@1|root,COG0664@2|Bacteria,1RCF4@1224|Proteobacteria,43BRQ@68525|delta/epsilon subdivisions,2X72K@28221|Deltaproteobacteria,2MJHW@213118|Desulfobacterales 28221|Deltaproteobacteria T PFAM Cyclic nucleotide-binding - - - - - - - - - - - - DUF4388,cNMP_binding DYD2_k127_5903411_1 1123226.KB899304_gene2633 2.824e-99 338.0 COG0624@1|root,COG0624@2|Bacteria,1TYR6@1239|Firmicutes,4HCVC@91061|Bacilli,2750H@186822|Paenibacillaceae 91061|Bacilli E Peptidase family M28 - - - - - - - - - - - - M20_dimer,Peptidase_M20,Peptidase_M28 DYD2_k127_5903411_0 1379698.RBG1_1C00001G0513 1.343e-144 467.0 COG0119@1|root,COG0119@2|Bacteria,2NNNZ@2323|unclassified Bacteria 2|Bacteria E Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) leuA3 - 2.3.3.13 ko:K01649 ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230 M00432 R01213 RC00004,RC00470,RC02754 br01601,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like DYD2_k127_5904125_0 1382359.JIAL01000001_gene1321 4.989e-113 370.0 COG4658@1|root,COG4658@2|Bacteria 2|Bacteria C electron transport chain - - 1.6.5.8 ko:K00347,ko:K03614,ko:K21163 ko01059,ko01130,map01059,map01130 M00824 - - ko00000,ko00001,ko00002,ko01000 - - - Complex1_51K,NQR2_RnfD_RnfE,RnfC_N,UnbV_ASPIC,VCBS DYD2_k127_5904125_1 1382359.JIAL01000001_gene1320 1.074e-90 308.0 COG0457@1|root,COG0457@2|Bacteria,3Y2M9@57723|Acidobacteria,2JMD8@204432|Acidobacteriia 204432|Acidobacteriia S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_5910415_0 1267534.KB906754_gene3585 1.703e-80 290.0 COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,3Y2HR@57723|Acidobacteria,2JI02@204432|Acidobacteriia 204432|Acidobacteriia KLT Tetratricopeptide repeats - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase,TPR_11,TPR_16,TPR_2,Trans_reg_C DYD2_k127_5910415_1 926550.CLDAP_00560 4.211e-64 222.0 COG2373@1|root,COG2373@2|Bacteria,2G5XN@200795|Chloroflexi 200795|Chloroflexi S PFAM alpha-2-macroglobulin domain protein - - - ko:K06894 - - - - ko00000 - - - A2M,A2M_N,A2M_N_2,Big_5,MG1 DYD2_k127_5912943_1 551115.Aazo_2239 4.351e-29 124.0 COG0741@1|root,COG1729@1|root,COG0741@2|Bacteria,COG1729@2|Bacteria,1G1HC@1117|Cyanobacteria,1HJP8@1161|Nostocales 1117|Cyanobacteria M COGs COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM invasin domains) slt - - ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 - SLT,TPR_16,TPR_6 DYD2_k127_5912943_3 502025.Hoch_6816 1.679e-17 95.0 2A20V@1|root,30QAU@2|Bacteria,1RDQH@1224|Proteobacteria,4330X@68525|delta/epsilon subdivisions,2WXN7@28221|Deltaproteobacteria,2Z0X5@29|Myxococcales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_5912943_4 1206741.BAFX01000133_gene1776 7.037e-12 74.0 COG0500@1|root,COG2226@2|Bacteria,2I3NV@201174|Actinobacteria,4FZ75@85025|Nocardiaceae 201174|Actinobacteria Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_25 DYD2_k127_5912943_0 941449.dsx2_0833 5.809e-111 370.0 COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,42QV3@68525|delta/epsilon subdivisions,2WMT2@28221|Deltaproteobacteria,2MA5X@213115|Desulfovibrionales 28221|Deltaproteobacteria G Glucose / Sorbosone dehydrogenase - - - ko:K21430 - - - - ko00000,ko01000 - - - GSDH DYD2_k127_5912943_2 1191523.MROS_0679 1.097e-28 121.0 COG0517@1|root,COG0517@2|Bacteria 2|Bacteria S IMP dehydrogenase activity - - - - - - - - - - - - CBS DYD2_k127_5917973_1 357808.RoseRS_0912 2.006e-36 149.0 COG0589@1|root,COG0589@2|Bacteria,2G768@200795|Chloroflexi,377HX@32061|Chloroflexia 32061|Chloroflexia T Belongs to the universal stress protein A family - - - - - - - - - - - - Usp DYD2_k127_5917973_2 289376.THEYE_A0363 1.731e-31 130.0 COG0071@1|root,COG0071@2|Bacteria,3J0TV@40117|Nitrospirae 40117|Nitrospirae O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD2_k127_5917973_3 667014.Thein_0011 4.155e-09 62.0 COG1734@1|root,COG1734@2|Bacteria,2GHW0@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria T Prokaryotic dksA/traR C4-type zinc finger - - - ko:K06204 ko02026,map02026 - - - ko00000,ko00001,ko03000,ko03009,ko03021 - - - zf-dskA_traR DYD2_k127_5917973_0 44454.NF84_09465 6.981e-70 252.0 COG0645@1|root,COG2187@1|root,COG0645@2|Bacteria,COG2187@2|Bacteria,2GM3U@201174|Actinobacteria,23637@1762|Mycobacteriaceae 201174|Actinobacteria S AAA domain - GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0009987,GO:0030312,GO:0044464,GO:0044764,GO:0046812,GO:0051704,GO:0071944 - ko:K07028 - - - - ko00000 - - - AAA_33,APH DYD2_k127_5926968_3 240015.ACP_1860 5.978e-09 63.0 COG4772@1|root,COG4772@2|Bacteria,3Y2I0@57723|Acidobacteria,2JJ0B@204432|Acidobacteriia 204432|Acidobacteriia P TonB-dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_5926968_0 1247726.MIM_c37000 1.032e-101 338.0 COG0037@1|root,COG0037@2|Bacteria,1MW5Q@1224|Proteobacteria,2VHWH@28216|Betaproteobacteria,3T1HY@506|Alcaligenaceae 28216|Betaproteobacteria J Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system ttcA - - ko:K14058 - - - - ko00000,ko03016 - - - ATP_bind_3 DYD2_k127_5926968_2 313624.NSP_26100 9.614e-29 124.0 COG0517@1|root,COG1994@1|root,COG0517@2|Bacteria,COG1994@2|Bacteria,1GC0N@1117|Cyanobacteria,1HR0M@1161|Nostocales 1117|Cyanobacteria S Belongs to the peptidase M50B family - - - - - - - - - - - - CBS,Peptidase_M50 DYD2_k127_5927182_0 497964.CfE428DRAFT_5023 3.719e-120 398.0 COG0577@1|root,COG0577@2|Bacteria,46U7K@74201|Verrucomicrobia 74201|Verrucomicrobia V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_5927182_1 671143.DAMO_3154 3.825e-91 308.0 COG1136@1|root,COG1136@2|Bacteria,2NP53@2323|unclassified Bacteria 2|Bacteria V ABC transporter macB - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD2_k127_5940797_1 1220534.B655_0693 2.79e-15 89.0 arCOG03999@1|root,arCOG03999@2157|Archaea,2Y4KU@28890|Euryarchaeota 28890|Euryarchaeota E Clostripain family - - - - - - - - - - - - Peptidase_C11 DYD2_k127_5940797_2 743721.Psesu_2225 0.0002819 51.0 28PQS@1|root,2ZCCP@2|Bacteria,1NCXC@1224|Proteobacteria,1SQ11@1236|Gammaproteobacteria,1X9E8@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - DYD2_k127_5940797_0 720555.BATR1942_02760 8.368e-75 267.0 COG1404@1|root,COG1404@2|Bacteria,1TQ2M@1239|Firmicutes,4HBYC@91061|Bacilli,1ZPV5@1386|Bacillus 91061|Bacilli O Belongs to the peptidase S8 family aprE GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005576,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030193,GO:0030195,GO:0032101,GO:0032102,GO:0042730,GO:0043170,GO:0044238,GO:0048519,GO:0048583,GO:0048585,GO:0050789,GO:0050818,GO:0050819,GO:0050878,GO:0051239,GO:0051241,GO:0061041,GO:0061045,GO:0065007,GO:0065008,GO:0070011,GO:0071704,GO:0080134,GO:0140096,GO:1900046,GO:1900047,GO:1901564,GO:1903034,GO:1903035 3.4.21.62 ko:K01342 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - Inhibitor_I9,Peptidase_S8,SLH DYD2_k127_5947473_3 1396.DJ87_2093 1.311e-53 203.0 COG2333@1|root,COG2333@2|Bacteria,1TS9U@1239|Firmicutes,4H9N3@91061|Bacilli,1ZBKV@1386|Bacillus 91061|Bacilli L Metallo-beta-lactamase superfamily - - - - - - - - - - - - HHH_3,Lactamase_B,SLH DYD2_k127_5947473_1 240015.ACP_1372 3.969e-127 415.0 COG0150@1|root,COG0150@2|Bacteria,3Y2GN@57723|Acidobacteria,2JITJ@204432|Acidobacteriia 204432|Acidobacteriia F Phosphoribosylformylglycinamidine cyclo-ligase purM - 6.3.3.1 ko:K01933 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04208 RC01100 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C DYD2_k127_5947473_2 1382359.JIAL01000001_gene1139 1.619e-75 259.0 COG0299@1|root,COG0299@2|Bacteria,3Y49G@57723|Acidobacteria,2JJ5A@204432|Acidobacteriia 204432|Acidobacteriia F Formyl transferase - - 2.1.2.2 ko:K11175 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - Formyl_trans_N DYD2_k127_5947473_0 667014.Thein_1915 2.549e-145 471.0 COG0162@1|root,COG0162@2|Bacteria,2GGUK@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) tyrS - 6.1.1.1 ko:K01866 ko00970,map00970 M00359,M00360 R02918 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - S4,tRNA-synt_1b DYD2_k127_5954425_0 243160.BMA2297 3.009e-179 564.0 COG1089@1|root,COG1089@2|Bacteria,1MUX0@1224|Proteobacteria,2VMBQ@28216|Betaproteobacteria,1KDVW@119060|Burkholderiaceae 28216|Betaproteobacteria M Male sterility protein - - 4.2.1.47 ko:K01711 ko00051,ko00520,ko01100,map00051,map00520,map01100 - R00888 RC00402 ko00000,ko00001,ko01000 - - - GDP_Man_Dehyd DYD2_k127_5954425_1 159450.NH14_11600 7.187e-123 402.0 COG2605@1|root,COG2605@2|Bacteria,1PKV9@1224|Proteobacteria,2VKPX@28216|Betaproteobacteria,1K6WR@119060|Burkholderiaceae 28216|Betaproteobacteria S GHMP kinases C terminal - - 2.7.1.168 ko:K07031 ko00540,map00540 - R09770 RC00002,RC00078 ko00000,ko00001,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD2_k127_5954425_2 335283.Neut_0159 7.56e-84 284.0 COG1208@1|root,COG1208@2|Bacteria,1MUYJ@1224|Proteobacteria,2VSVY@28216|Betaproteobacteria 28216|Betaproteobacteria JM Nucleotidyl transferase - - 2.7.7.71 ko:K15669 ko00540,map00540 - R09772 RC00002 ko00000,ko00001,ko01000 - - - NTP_transferase DYD2_k127_5954425_3 159450.NH14_11585 6.92e-40 152.0 COG0241@1|root,COG0241@2|Bacteria,1RDGR@1224|Proteobacteria,2VSRD@28216|Betaproteobacteria,1K9TA@119060|Burkholderiaceae 28216|Betaproteobacteria E HAD-hyrolase-like gmhB_2 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 ko:K03273 ko00540,ko01100,map00540,map01100 M00064 R05647,R09771 RC00017 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hydrolase_like DYD2_k127_5956555_1 575540.Isop_0721 5.411e-05 55.0 COG1807@1|root,COG1807@2|Bacteria,2IZNI@203682|Planctomycetes 203682|Planctomycetes M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - - - - - - - - - - PMT,PMT_2 DYD2_k127_5956555_0 204669.Acid345_2620 1.077e-96 325.0 COG0773@1|root,COG0773@2|Bacteria,3Y2M2@57723|Acidobacteria,2JIE2@204432|Acidobacteriia 204432|Acidobacteriia M Mur ligase middle domain - - 6.3.2.45 ko:K02558 - - - - ko00000,ko01000 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M DYD2_k127_5978537_2 1340493.JNIF01000004_gene1042 3.736e-21 106.0 2DUZM@1|root,33T72@2|Bacteria,3Y7AK@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_5978537_3 1123255.JHYS01000001_gene2106 3.279e-15 80.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2VHSB@28216|Betaproteobacteria,4A9YR@80864|Comamonadaceae 28216|Betaproteobacteria T two component, sigma54 specific, transcriptional regulator, Fis family atoC - - ko:K02481,ko:K10941 ko02020,ko02025,ko05111,map02020,map02025,map05111 - - - ko00000,ko00001,ko02022,ko03000 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_5978537_0 861299.J421_2526 8.659e-45 171.0 COG2802@1|root,COG2802@2|Bacteria,1ZUZ8@142182|Gemmatimonadetes 142182|Gemmatimonadetes S ATP-dependent protease La (LON) substrate-binding domain - - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - LON_substr_bdg DYD2_k127_5978537_4 4155.Migut.C01384.1.p 1.061e-14 77.0 KOG3474@1|root,KOG3474@2759|Eukaryota,37WD6@33090|Viridiplantae,3GKBW@35493|Streptophyta,44KPI@71274|asterids 35493|Streptophyta C Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin - GO:0006464,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0018315,GO:0019538,GO:0023052,GO:0032870,GO:0036211,GO:0042040,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:1901564 2.8.1.12 ko:K03635,ko:K21232 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09395 RC02507 ko00000,ko00001,ko01000 - - - ThiS DYD2_k127_5978537_1 292459.STH3180 1.776e-40 154.0 COG0314@1|root,COG1977@1|root,COG0314@2|Bacteria,COG1977@2|Bacteria,1V3V0@1239|Firmicutes,24QVX@186801|Clostridia 186801|Clostridia H Molybdopterin converting factor subunit - - 2.8.1.12 ko:K03635,ko:K21142 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09395 RC02507 ko00000,ko00001,ko01000 - - - MoaE,ThiS DYD2_k127_5983866_1 945713.IALB_0983 2.913e-91 308.0 COG4299@1|root,COG4299@2|Bacteria 2|Bacteria G COGs COG4299 conserved - - - - - - - - - - - - DUF1624,DUF5009 DYD2_k127_5983866_0 452637.Oter_2944 2.966e-139 449.0 COG0388@1|root,COG0388@2|Bacteria 2|Bacteria S hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - - - - - - - - - - - CN_hydrolase DYD2_k127_5983866_2 452637.Oter_2945 8.571e-35 137.0 COG0457@1|root,COG0457@2|Bacteria 452637.Oter_2945|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_5986038_4 1173022.Cri9333_4294 4.883e-63 234.0 COG1216@1|root,COG1216@2|Bacteria,1G3T8@1117|Cyanobacteria,1HA4H@1150|Oscillatoriales 1117|Cyanobacteria S Uncharacterised nucleotidyltransferase - - - - - - - - - - - - NTP_transf_5 DYD2_k127_5986038_1 1183438.GKIL_2157 1.818e-115 384.0 COG4076@1|root,COG4076@2|Bacteria,1G4RK@1117|Cyanobacteria 1117|Cyanobacteria J PRMT5 arginine-N-methyltransferase - - 2.1.1.319 ko:K11434 ko04068,ko04922,map04068,map04922 - R11216,R11217,R11219 RC00003,RC02120,RC03388,RC03390 ko00000,ko00001,ko01000,ko03036 - - - PRMT5_C,PrmA DYD2_k127_5986038_3 1128427.KB904821_gene4607 5.07e-82 286.0 COG1136@1|root,COG1136@2|Bacteria 2|Bacteria V lipoprotein transporter activity - - - - - - - - - - - - ABC_tran,FtsX DYD2_k127_5986038_0 395961.Cyan7425_1026 7.118e-127 428.0 COG0367@1|root,COG0367@2|Bacteria,1G3S7@1117|Cyanobacteria 1117|Cyanobacteria E Asparagine synthase - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 DYD2_k127_5986038_5 1183438.GKIL_2163 4.971e-18 87.0 2DRDY@1|root,33BC0@2|Bacteria,1GB4J@1117|Cyanobacteria 1117|Cyanobacteria S Coenzyme PQQ synthesis protein D (PqqD) - - - - - - - - - - - - PqqD DYD2_k127_5986038_2 82654.Pse7367_1025 6.203e-98 324.0 COG0313@1|root,COG0313@2|Bacteria,1G0IF@1117|Cyanobacteria,1H7AW@1150|Oscillatoriales 1117|Cyanobacteria H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA rsmI GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 2.1.1.198 ko:K07056 - - - - ko00000,ko01000,ko03009 - - - TP_methylase DYD2_k127_5986038_6 398767.Glov_1657 1.834e-13 76.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,43UCF@69541|Desulfuromonadales 28221|Deltaproteobacteria T response regulator pilR - - ko:K02667 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_598923_0 272134.KB731324_gene1653 1.129e-82 283.0 COG0167@1|root,COG0167@2|Bacteria,1G1C2@1117|Cyanobacteria,1H89S@1150|Oscillatoriales 1117|Cyanobacteria F Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor pyrD - 1.3.5.2 ko:K00254 ko00240,ko01100,map00240,map01100 M00051 R01868 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh DYD2_k127_598923_1 985255.APHJ01000021_gene1662 5.365e-07 61.0 COG3170@1|root,COG3170@2|Bacteria,4NF47@976|Bacteroidetes,1HXT1@117743|Flavobacteriia,2P5GA@244698|Gillisia 976|Bacteroidetes NU Protein of unknown function (DUF3108) - - - - - - - - - - - - DUF3108 DYD2_k127_5989799_5 1292035.H476_1845 2.39e-08 55.0 COG0443@1|root,COG0443@2|Bacteria,1TP1J@1239|Firmicutes,248QV@186801|Clostridia,25R5Y@186804|Peptostreptococcaceae 186801|Clostridia O Heat shock 70 kDa protein dnaK - - ko:K04043 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33.1 - - HSP70 DYD2_k127_5989799_4 1284352.AOIG01000006_gene2740 3.154e-29 126.0 COG0576@1|root,COG0576@2|Bacteria,1V6G2@1239|Firmicutes,4HIRK@91061|Bacilli,26X19@186822|Paenibacillaceae 91061|Bacilli O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ grpE GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - ko:K03687 - - - - ko00000,ko03029,ko03110 - - - GrpE DYD2_k127_5989799_1 671143.DAMO_2256 3.506e-75 265.0 COG1420@1|root,COG1420@2|Bacteria,2NPAK@2323|unclassified Bacteria 2|Bacteria K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons hrcA GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - ko:K03705 - - - - ko00000,ko03000 - - - HTH_DeoR,HrcA,HrcA_DNA-bdg DYD2_k127_5989799_2 1382359.JIAL01000001_gene123 3.993e-56 204.0 COG1451@1|root,COG1451@2|Bacteria,3Y2SM@57723|Acidobacteria,2JHKB@204432|Acidobacteriia 204432|Acidobacteriia S nucleotide metabolic process - - - - - - - - - - - - - DYD2_k127_5989799_0 861299.J421_3685 1.066e-76 260.0 COG0231@1|root,COG0231@2|Bacteria,1ZT2N@142182|Gemmatimonadetes 142182|Gemmatimonadetes J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase efp - - ko:K02356 - - - - ko00000,ko03012 - - - EFP,EFP_N,Elong-fact-P_C DYD2_k127_5989799_3 243231.GSU2259 1.969e-38 149.0 COG1519@1|root,COG1519@2|Bacteria,1MU9F@1224|Proteobacteria,42PCH@68525|delta/epsilon subdivisions,2WMQM@28221|Deltaproteobacteria,43TBC@69541|Desulfuromonadales 28221|Deltaproteobacteria M 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) kdtA - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 ko:K02527 ko00540,ko01100,map00540,map01100 M00060,M00080 R04658,R05074,R09763 RC00009,RC00077,RC00247 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT30 - Glycos_transf_N DYD2_k127_5996801_1 234267.Acid_5690 7.496e-106 356.0 COG1007@1|root,COG1007@2|Bacteria,3Y43Y@57723|Acidobacteria 57723|Acidobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M DYD2_k127_5996801_10 379066.GAU_3720 1.39e-47 176.0 28KW4@1|root,2ZACH@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_5996801_8 743836.AYNA01000104_gene2059 6.784e-62 229.0 COG1215@1|root,COG1215@2|Bacteria,1R8UT@1224|Proteobacteria,2TVQT@28211|Alphaproteobacteria 28211|Alphaproteobacteria M Glycosyl transferase family 21 - - - - - - - - - - - - Glyco_tranf_2_3,Glyco_transf_21 DYD2_k127_5996801_6 1235803.C825_01776 7.54e-68 244.0 COG0535@1|root,COG0535@2|Bacteria,4PA9R@976|Bacteroidetes,2FWDR@200643|Bacteroidia 976|Bacteroidetes S Radical SAM superfamily - - - - - - - - - - - - Fer4_14,Radical_SAM DYD2_k127_5996801_15 518766.Rmar_1451 4.869e-12 70.0 COG2886@1|root,COG2886@2|Bacteria,4NY9B@976|Bacteroidetes 976|Bacteroidetes S Uncharacterised protein family (UPF0175) - - - - - - - - - - - - UPF0175 DYD2_k127_5996801_13 224325.AF_0598 4.872e-18 93.0 COG2405@1|root,arCOG00717@2157|Archaea,2XXNX@28890|Euryarchaeota,247CV@183980|Archaeoglobi 183980|Archaeoglobi V Domain of unknown function (DUF3368) - - - ko:K07066 - - - - ko00000 - - - DUF3368 DYD2_k127_5996801_16 629773.AORY01000004_gene398 9.601e-05 53.0 COG5336@1|root,COG5336@2|Bacteria,1N2ME@1224|Proteobacteria,2UCBR@28211|Alphaproteobacteria,2K62W@204457|Sphingomonadales 204457|Sphingomonadales S function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex atpI - - ko:K02116 - - - - ko00000,ko00194 3.A.2.1 - - ATPase_gene1 DYD2_k127_5996801_17 1408423.JHYA01000002_gene612 0.0005723 46.0 COG1396@1|root,COG1396@2|Bacteria,1U5XE@1239|Firmicutes,4H8P5@909932|Negativicutes 909932|Negativicutes K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - - DYD2_k127_5996801_11 652103.Rpdx1_1976 6.677e-45 167.0 COG5499@1|root,COG5499@2|Bacteria,1MZHS@1224|Proteobacteria,2U9KN@28211|Alphaproteobacteria,3JZ0K@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria K transcription regulator containing HTH domain - - - ko:K18831 - - - - ko00000,ko02048,ko03000 - - - HTH_3 DYD2_k127_5996801_12 717773.Thicy_0382 1.558e-32 130.0 COG4680@1|root,COG4680@2|Bacteria,1N036@1224|Proteobacteria,1S6VU@1236|Gammaproteobacteria,462P8@72273|Thiotrichales 72273|Thiotrichales S HigB_toxin, RelE-like toxic component of a toxin-antitoxin system - - - ko:K19166 - - - - ko00000,ko01000,ko02048 - - - HigB_toxin DYD2_k127_5996801_4 748280.NH8B_1093 4.495e-71 253.0 COG3221@1|root,COG3221@2|Bacteria,1MWFF@1224|Proteobacteria,2VMDZ@28216|Betaproteobacteria,2KS8Y@206351|Neisseriales 206351|Neisseriales P ABC transporter, phosphonate, periplasmic substrate-binding protein - - - ko:K02044 ko02010,map02010 M00223 - - ko00000,ko00001,ko00002,ko02000 3.A.1.9 - - Phosphonate-bd DYD2_k127_5996801_5 671143.DAMO_1883 4.747e-70 246.0 COG3638@1|root,COG3638@2|Bacteria,2NPDZ@2323|unclassified Bacteria 2|Bacteria P Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system phnC - 3.6.3.28 ko:K02041 ko02010,map02010 M00223 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.9 - - ABC_tran DYD2_k127_5996801_2 290397.Adeh_0456 2.653e-101 351.0 COG3639@1|root,COG3639@2|Bacteria,1N3HU@1224|Proteobacteria,43AKI@68525|delta/epsilon subdivisions,2WQEI@28221|Deltaproteobacteria,2YYUD@29|Myxococcales 28221|Deltaproteobacteria P Binding-protein-dependent transport system inner membrane component - - - ko:K02042 ko02010,map02010 M00223 - - ko00000,ko00001,ko00002,ko02000 3.A.1.9 - - BPD_transp_1 DYD2_k127_5996801_0 713587.THITH_05440 4.599e-163 528.0 COG1262@1|root,COG1262@2|Bacteria,1MUNC@1224|Proteobacteria,1RQI4@1236|Gammaproteobacteria,1WZEX@135613|Chromatiales 135613|Chromatiales H DinB superfamily - - 1.14.99.50 ko:K18912 ko00340,map00340 - R11013 RC03323,RC03324 ko00000,ko00001,ko01000 - - - DinB_2,FGE-sulfatase DYD2_k127_5996801_3 713587.THITH_05445 8.588e-79 273.0 COG0438@1|root,COG0438@2|Bacteria,1RB3J@1224|Proteobacteria,1RW61@1236|Gammaproteobacteria 1236|Gammaproteobacteria M COG0438 Glycosyltransferase - - - - - - - - - - - - Glycos_transf_1 DYD2_k127_5996801_9 443144.GM21_0378 5.852e-51 186.0 28W7P@1|root,2ZI89@2|Bacteria,1N2SJ@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_5996801_7 443143.GM18_2025 1.258e-67 238.0 COG4849@1|root,COG4849@2|Bacteria,1RDHG@1224|Proteobacteria,42WAF@68525|delta/epsilon subdivisions,2WRPU@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Protein conserved in bacteria - - - - - - - - - - - - - DYD2_k127_5999566_0 1183438.GKIL_0524 1.259e-79 283.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - VPEP DYD2_k127_6007277_2 909663.KI867150_gene1026 3.939e-67 246.0 COG2202@1|root,COG3829@1|root,COG4585@1|root,COG2202@2|Bacteria,COG3829@2|Bacteria,COG4585@2|Bacteria,1N0Y7@1224|Proteobacteria 1224|Proteobacteria T PFAM ATP-binding region - - - - - - - - - - - - HATPase_c,HisKA_3,MASE1,PAS DYD2_k127_6007277_1 452637.Oter_0043 1.131e-68 242.0 COG2197@1|root,COG2197@2|Bacteria,46V5Z@74201|Verrucomicrobia 74201|Verrucomicrobia T Two component transcriptional regulator, LuxR family - - - - - - - - - - - - GerE,Response_reg DYD2_k127_6007277_0 76114.ebA5649 8.102e-123 395.0 COG0043@1|root,COG0043@2|Bacteria,1MU62@1224|Proteobacteria 1224|Proteobacteria H Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis - - - - - - - - - - - - UbiD DYD2_k127_601085_1 338966.Ppro_0511 4.03e-112 395.0 COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,42MCT@68525|delta/epsilon subdivisions,2WINW@28221|Deltaproteobacteria,43T20@69541|Desulfuromonadales 28221|Deltaproteobacteria H Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell glnE - 2.7.7.42,2.7.7.89 ko:K00982 - - - - ko00000,ko01000 - - - GlnD_UR_UTase,GlnE DYD2_k127_601085_0 502025.Hoch_2715 1.054e-142 466.0 COG0312@1|root,COG0312@2|Bacteria,1MUSK@1224|Proteobacteria,43B01@68525|delta/epsilon subdivisions,2X6E4@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Putative modulator of DNA gyrase - - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD DYD2_k127_6013320_2 240292.Ava_3249 1.319e-18 87.0 COG2442@1|root,COG2442@2|Bacteria,1G4E6@1117|Cyanobacteria,1HN4K@1161|Nostocales 1117|Cyanobacteria S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 DYD2_k127_6013320_0 237368.SCABRO_03668 2.989e-90 319.0 COG5421@1|root,COG5421@2|Bacteria,2J33B@203682|Planctomycetes 203682|Planctomycetes - - - - - - - - - - - - - - - DYD2_k127_6013320_1 671143.DAMO_2920 1.372e-27 116.0 2DRSH@1|root,33CVS@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_6021948_0 1173027.Mic7113_5049 1.752e-90 316.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G135@1117|Cyanobacteria,1H8D7@1150|Oscillatoriales 1117|Cyanobacteria M Tetratricopeptide repeat - - - - - - - - - - - - CHAT,TPR_1,TPR_10,TPR_12,TPR_7,TPR_8 DYD2_k127_6021948_2 1078085.HMPREF1210_01964 2.512e-10 63.0 COG3118@1|root,COG3118@2|Bacteria,1VEPC@1239|Firmicutes,4HNXE@91061|Bacilli,26GF0@186818|Planococcaceae 91061|Bacilli O Protein of unknown function (DUF2847) ytxJ - - - - - - - - - - - DUF2847 DYD2_k127_6023844_0 761193.Runsl_0507 4.629e-134 434.0 COG0620@1|root,COG0620@2|Bacteria,4NJAH@976|Bacteroidetes,47MCD@768503|Cytophagia 976|Bacteroidetes E PFAM Methionine synthase vitamin-B12 independent - - 2.1.1.14 ko:K00549 ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230 M00017 R04405,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - Meth_synt_2 DYD2_k127_6023844_1 485913.Krac_2435 3.011e-98 331.0 COG1319@1|root,COG1319@2|Bacteria 2|Bacteria C xanthine dehydrogenase activity hcrB - 1.3.7.9 ko:K04109 ko00362,ko00627,ko01100,ko01120,ko01220,map00362,map00627,map01100,map01120,map01220 - R05316 RC00490 ko00000,ko00001,ko01000 - - - CO_deh_flav_C,FAD_binding_5 DYD2_k127_6023844_2 1382306.JNIM01000001_gene1023 1.172e-85 288.0 COG1529@1|root,COG1529@2|Bacteria 2|Bacteria C xanthine dehydrogenase activity hcrA - 1.3.7.9 ko:K04108 ko00362,ko00627,ko01100,ko01120,ko01220,map00362,map00627,map01100,map01120,map01220 - R05316 RC00490 ko00000,ko00001,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_6030689_3 1385517.N800_10160 7.877e-10 64.0 COG1404@1|root,COG1404@2|Bacteria,1N01Y@1224|Proteobacteria,1RN5J@1236|Gammaproteobacteria,1X4N6@135614|Xanthomonadales 135614|Xanthomonadales O S-layer homology domain - - - ko:K17734 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S8,SLH DYD2_k127_6030689_0 1267533.KB906736_gene1071 2.347e-85 297.0 COG0577@1|root,COG0577@2|Bacteria,3Y6B8@57723|Acidobacteria,2JK7N@204432|Acidobacteriia 204432|Acidobacteriia V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_6030689_2 1267533.KB906733_gene2985 6.841e-10 62.0 COG0577@1|root,COG0577@2|Bacteria 2|Bacteria V efflux transmembrane transporter activity - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_6030689_1 204669.Acid345_1284 3.71e-41 154.0 COG1695@1|root,COG1695@2|Bacteria,3Y5C5@57723|Acidobacteria,2JNCX@204432|Acidobacteriia 204432|Acidobacteriia K Transcriptional regulator PadR-like family - - - - - - - - - - - - PadR DYD2_k127_6030689_4 234267.Acid_6265 2.397e-05 49.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria,3Y2PK@57723|Acidobacteria 57723|Acidobacteria KLTU WD40 domain protein beta Propeller - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PD40,Pkinase DYD2_k127_6031717_1 1232410.KI421412_gene304 4.328e-25 120.0 COG4585@1|root,COG4585@2|Bacteria,1R3TZ@1224|Proteobacteria,42YNI@68525|delta/epsilon subdivisions,2WTTE@28221|Deltaproteobacteria,43T7V@69541|Desulfuromonadales 28221|Deltaproteobacteria T Histidine kinase - - - - - - - - - - - - HAMP,HATPase_c,HisKA_3 DYD2_k127_6031717_0 926569.ANT_22550 3.781e-88 302.0 COG2313@1|root,COG2313@2|Bacteria,2G5KC@200795|Chloroflexi 200795|Chloroflexi Q Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway psuG - 4.2.1.70 ko:K16329 ko00240,map00240 - R01055 RC00432,RC00433 ko00000,ko00001,ko01000 - - - Indigoidine_A DYD2_k127_6035855_2 1379698.RBG1_1C00001G0519 2.447e-49 188.0 COG0697@1|root,COG0697@2|Bacteria,2NPZZ@2323|unclassified Bacteria 2|Bacteria EG EamA-like transporter family pagO - - ko:K07790 ko02020,map02020 - - - ko00000,ko00001 2.A.7 - - EamA DYD2_k127_6035855_0 1348114.OM33_04140 2.945e-78 269.0 COG3324@1|root,COG3324@2|Bacteria,1R81W@1224|Proteobacteria,1RYXR@1236|Gammaproteobacteria,2Q1G4@267888|Pseudoalteromonadaceae 1236|Gammaproteobacteria S enzyme related to lactoylglutathione lyase - - - ko:K06996 - - - - ko00000 - - - Glyoxalase DYD2_k127_6035855_1 1254432.SCE1572_40520 1.793e-53 191.0 COG0537@1|root,COG0537@2|Bacteria,1PDTP@1224|Proteobacteria,42UAD@68525|delta/epsilon subdivisions,2WQRN@28221|Deltaproteobacteria 28221|Deltaproteobacteria FG PFAM Histidine triad (HIT) protein - - - ko:K02503 - - - - ko00000,ko04147 - - - HIT DYD2_k127_6035855_3 1499967.BAYZ01000013_gene6453 4.982e-23 106.0 2CC7H@1|root,32RJ0@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_6046734_2 330214.NIDE1061 9.552e-41 156.0 COG3063@1|root,COG3063@2|Bacteria 2|Bacteria NU photosynthesis sscB - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_8 DYD2_k127_6046734_0 1242864.D187_008887 1.811e-176 567.0 COG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,42Q71@68525|delta/epsilon subdivisions,2WK8Q@28221|Deltaproteobacteria 28221|Deltaproteobacteria F Belongs to the 5'-nucleotidase family - - 3.1.3.5,3.6.1.45 ko:K11751 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - 5_nucleotid_C,EF-hand_5,Metallophos DYD2_k127_6046734_1 797304.Natgr_0437 6.165e-50 184.0 COG0451@1|root,arCOG01369@2157|Archaea,2XUBD@28890|Euryarchaeota,23UKG@183963|Halobacteria 183963|Halobacteria M dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes - - - - - - - - - - - - NAD_binding_4 DYD2_k127_6046867_0 378806.STAUR_3337 6.193e-53 208.0 COG3104@1|root,COG3104@2|Bacteria,1MW6W@1224|Proteobacteria,42NNY@68525|delta/epsilon subdivisions,2WKK6@28221|Deltaproteobacteria,2YUFS@29|Myxococcales 28221|Deltaproteobacteria P POT family - - - ko:K03305 - - - - ko00000 2.A.17 - - PTR2 DYD2_k127_604985_6 997346.HMPREF9374_1651 9.659e-05 51.0 COG1074@1|root,COG1074@2|Bacteria,1TQ35@1239|Firmicutes,4HA64@91061|Bacilli,27CSD@186824|Thermoactinomycetaceae 91061|Bacilli L PD-(D/E)XK nuclease superfamily - - 3.6.4.12 ko:K16898 - - - - ko00000,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C DYD2_k127_604985_3 1283299.AUKG01000002_gene3714 4.692e-33 134.0 COG1225@1|root,COG1225@2|Bacteria,2IJVV@201174|Actinobacteria,4CRY9@84995|Rubrobacteria 84995|Rubrobacteria O Redoxin - - - - - - - - - - - - AhpC-TSA DYD2_k127_604985_4 379066.GAU_0167 1.888e-21 97.0 COG2924@1|root,COG2924@2|Bacteria,1ZTWZ@142182|Gemmatimonadetes 142182|Gemmatimonadetes C Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - - - - - - - - - - Iron_traffic DYD2_k127_604985_5 223926.28805063 1.497e-05 53.0 COG2823@1|root,COG2823@2|Bacteria,1PCIJ@1224|Proteobacteria,1RRGP@1236|Gammaproteobacteria,1XYNI@135623|Vibrionales 135623|Vibrionales S BON domain - - - - - - - - - - - - BON DYD2_k127_604985_1 861299.J421_0738 6.121e-161 524.0 COG1228@1|root,COG1228@2|Bacteria,1ZTC8@142182|Gemmatimonadetes 2|Bacteria Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1,Amidohydro_3 DYD2_k127_604985_0 861299.J421_0737 2.855e-180 576.0 COG1228@1|root,COG1228@2|Bacteria,1ZTC8@142182|Gemmatimonadetes 142182|Gemmatimonadetes Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_604985_2 861299.J421_0736 7.618e-107 358.0 COG1228@1|root,COG1228@2|Bacteria,1ZTI7@142182|Gemmatimonadetes 142182|Gemmatimonadetes Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_6050132_2 452637.Oter_1904 3.346e-30 121.0 COG2204@1|root,COG2204@2|Bacteria,46SFE@74201|Verrucomicrobia,3K7NF@414999|Opitutae 74201|Verrucomicrobia T sigma-54 factor interaction domain-containing protein - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_6050132_0 861299.J421_2707 5.94e-162 530.0 COG1022@1|root,COG1022@2|Bacteria,1ZT60@142182|Gemmatimonadetes 142182|Gemmatimonadetes I AMP-binding enzyme - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding DYD2_k127_6050132_1 204669.Acid345_2080 2.652e-30 124.0 COG1309@1|root,COG1309@2|Bacteria,3Y5Z3@57723|Acidobacteria,2JK6W@204432|Acidobacteriia 204432|Acidobacteriia K Bacterial regulatory proteins, tetR family - - - ko:K13770 - - - - ko00000,ko03000 - - - TetR_C_4,TetR_N DYD2_k127_605992_3 1304880.JAGB01000002_gene1806 6.504e-48 182.0 COG0340@1|root,COG1654@1|root,COG0340@2|Bacteria,COG1654@2|Bacteria,1TQCU@1239|Firmicutes,248CK@186801|Clostridia 186801|Clostridia HK Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor birA - 6.3.4.15 ko:K03524 ko00780,ko01100,map00780,map01100 - R01074,R05145 RC00043,RC00070,RC00096,RC02896 ko00000,ko00001,ko01000,ko03000 - - - BPL_C,BPL_LplA_LipB,HTH_11 DYD2_k127_605992_0 886293.Sinac_4664 1.402e-115 387.0 COG1819@1|root,COG1819@2|Bacteria,2IZT0@203682|Planctomycetes 203682|Planctomycetes CG UDP-glucoronosyl and UDP-glucosyl transferase - - - - - - - - - - - - Glyco_transf_28,UDPGT DYD2_k127_605992_1 204669.Acid345_0136 5.475e-95 318.0 COG1521@1|root,COG1521@2|Bacteria,3Y398@57723|Acidobacteria,2JI76@204432|Acidobacteriia 204432|Acidobacteriia F Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis coaX - 2.7.1.33 ko:K03525 ko00770,ko01100,map00770,map01100 M00120 R02971,R03018,R04391 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Pan_kinase DYD2_k127_605992_4 240015.ACP_2579 5.981e-31 132.0 COG3468@1|root,COG3468@2|Bacteria,3Y4BG@57723|Acidobacteria,2JJ56@204432|Acidobacteriia 204432|Acidobacteriia MU outer membrane autotransporter barrel domain protein - - - - - - - - - - - - - DYD2_k127_605992_2 1232410.KI421413_gene512 9.211e-56 211.0 COG2265@1|root,COG2265@2|Bacteria,1MV3A@1224|Proteobacteria,42ME9@68525|delta/epsilon subdivisions,2WKF0@28221|Deltaproteobacteria,43S48@69541|Desulfuromonadales 28221|Deltaproteobacteria J TRAM domain rumA - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr DYD2_k127_605992_5 204669.Acid345_0140 2.4e-05 55.0 COG0658@1|root,COG2333@1|root,COG0658@2|Bacteria,COG2333@2|Bacteria,3Y3VQ@57723|Acidobacteria,2JI41@204432|Acidobacteriia 204432|Acidobacteriia S DNA internalization-related competence protein ComEC Rec2 - - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Competence,DUF4131,Lactamase_B DYD2_k127_606281_1 28072.Nos7524_5242 4.154e-90 303.0 COG4658@1|root,COG4658@2|Bacteria 2|Bacteria C electron transport chain unbU - 1.6.5.8 ko:K00347,ko:K03614,ko:K21162,ko:K21163 ko01059,ko01130,map01059,map01130 M00824 - - ko00000,ko00001,ko00002,ko01000 - - - Complex1_51K,NQR2_RnfD_RnfE DYD2_k127_606281_0 28072.Nos7524_5243 0.0 1350.0 COG1028@1|root,COG3321@1|root,COG1028@2|Bacteria,COG3321@2|Bacteria,1G1IB@1117|Cyanobacteria,1HJKD@1161|Nostocales 2|Bacteria IQ TIGRFAM Polyketide-type polyunsaturated fatty acid synthase, PfaA - - - ko:K15314 ko01059,ko01130,map01059,map01130 M00824,M00825 R11435 - ko00000,ko00001,ko00002,ko01008 - - - Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,ketoacyl-synt DYD2_k127_6063370_2 1267533.KB906735_gene4668 4.04e-12 71.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria,3Y69R@57723|Acidobacteria,2JKIQ@204432|Acidobacteriia 204432|Acidobacteriia KLT Protein kinase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PD40,Pkinase DYD2_k127_6063370_0 234267.Acid_3204 2.582e-293 932.0 COG4447@1|root,COG4447@2|Bacteria 2|Bacteria S cellulose binding - - - - - - - - - - - - BNR,Sortilin-Vps10 DYD2_k127_6063370_1 886293.Sinac_2397 7.253e-86 292.0 COG1028@1|root,COG1028@2|Bacteria 886293.Sinac_2397|- IQ oxidoreductase activity, acting on CH-OH group of donors - - 1.3.1.34 ko:K13237 ko04146,map04146 - - - ko00000,ko00001,ko01000 - - - - DYD2_k127_6064823_1 1267535.KB906767_gene433 5.44e-60 211.0 COG0480@1|root,COG0480@2|Bacteria,3Y2RR@57723|Acidobacteria,2JI85@204432|Acidobacteriia 204432|Acidobacteriia J Elongation factor G, domain IV - - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 DYD2_k127_6064823_0 204669.Acid345_1010 2.01e-75 263.0 COG0429@1|root,COG0429@2|Bacteria,3Y3MP@57723|Acidobacteria,2JI5X@204432|Acidobacteriia 204432|Acidobacteriia S Serine aminopeptidase, S33 - - - ko:K07019 - - - - ko00000 - - - Abhydrolase_1 DYD2_k127_607193_4 1174528.JH992893_gene5856 3.472e-69 249.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,PilZ,Thioesterase DYD2_k127_607193_3 329726.AM1_0519 1.958e-84 289.0 COG5285@1|root,COG5285@2|Bacteria,1G2K3@1117|Cyanobacteria 1117|Cyanobacteria Q Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - - - - - - - - - - PhyH DYD2_k127_607193_0 1173023.KE650771_gene5334 3.819e-129 429.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1JI65@1189|Stigonemataceae 1117|Cyanobacteria Q Condensation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding,TPR_1,TPR_8,Thioesterase DYD2_k127_607193_2 497964.CfE428DRAFT_0858 7.996e-93 314.0 COG5285@1|root,COG5285@2|Bacteria 2|Bacteria Q dioxygenase activity MA20_06795 - 1.14.11.55 ko:K10674 ko00260,ko01120,map00260,map01120 - R08050 RC00661 ko00000,ko00001,ko01000 - - - PhyH DYD2_k127_607193_1 1174528.JH992891_gene302 1.645e-120 397.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria 1117|Cyanobacteria Q Amino acid adenylation domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,PilZ,Thioesterase DYD2_k127_6076467_1 1297742.A176_05295 2.507e-72 254.0 COG0796@1|root,COG0796@2|Bacteria,1NAI2@1224|Proteobacteria,42P58@68525|delta/epsilon subdivisions,2WKYK@28221|Deltaproteobacteria,2YY1K@29|Myxococcales 28221|Deltaproteobacteria M Provides the (R)-glutamate required for cell wall biosynthesis murI - 5.1.1.3 ko:K01776 ko00471,ko01100,map00471,map01100 - R00260 RC00302 ko00000,ko00001,ko01000,ko01011 - - iAF987.Gmet_0547 Asp_Glu_race DYD2_k127_6076467_0 671143.DAMO_1598 5.116e-121 400.0 COG1071@1|root,COG1071@2|Bacteria,2NQC2@2323|unclassified Bacteria 2|Bacteria C The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) pdhA - 1.2.4.1,1.2.4.4 ko:K00161,ko:K11381 ko00010,ko00020,ko00280,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00280,map00620,map00640,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00036,M00307 R00014,R00209,R01699,R03270,R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00004,RC00027,RC00627,RC02742,RC02743,RC02744,RC02882,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh DYD2_k127_6076467_2 1094556.MCY_00811 3.599e-23 101.0 COG0022@1|root,COG0022@2|Bacteria,1R8KB@1224|Proteobacteria,2TRMR@28211|Alphaproteobacteria,48T1R@772|Bartonellaceae 28211|Alphaproteobacteria C The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) pdhB - 1.2.4.1 ko:K00162 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00307 R00014,R00209,R01699,R03270 RC00004,RC00027,RC00627,RC02742,RC02744,RC02882 br01601,ko00000,ko00001,ko00002,ko01000 - - - Biotin_lipoyl,Transket_pyr,Transketolase_C DYD2_k127_6083257_3 945713.IALB_2693 3.017e-09 59.0 COG2355@1|root,COG2355@2|Bacteria 2|Bacteria E Zn-dependent dipeptidase, microsomal dipeptidase - - 3.4.13.19 ko:K01273 - - - - ko00000,ko00537,ko01000,ko01002,ko04147 - - - Peptidase_M19 DYD2_k127_6083257_0 706587.Desti_3062 7.978e-91 316.0 COG0635@1|root,COG0635@2|Bacteria,1MU76@1224|Proteobacteria,42NGU@68525|delta/epsilon subdivisions,2WIM5@28221|Deltaproteobacteria,2MQ6W@213462|Syntrophobacterales 28221|Deltaproteobacteria H Involved in the biosynthesis of porphyrin-containing compound - - - - - - - - - - - - HemN_C,Radical_SAM DYD2_k127_6083257_1 1232410.KI421418_gene2307 4.338e-56 204.0 COG0283@1|root,COG0283@2|Bacteria,1MUUD@1224|Proteobacteria,42STI@68525|delta/epsilon subdivisions,2WP1K@28221|Deltaproteobacteria,43VZJ@69541|Desulfuromonadales 28221|Deltaproteobacteria F Cytidylate kinase cmk - 2.7.4.25 ko:K00945 ko00240,ko01100,map00240,map01100 M00052 R00158,R00512,R01665 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Cytidylate_kin DYD2_k127_6083257_2 880073.Calab_1719 1.762e-11 75.0 COG0457@1|root,COG0457@2|Bacteria,2NPK1@2323|unclassified Bacteria 2|Bacteria T Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_8 DYD2_k127_6083982_1 349163.Acry_2679 4.574e-56 209.0 COG0628@1|root,COG0628@2|Bacteria,1MVX7@1224|Proteobacteria,2TVGG@28211|Alphaproteobacteria 28211|Alphaproteobacteria S AI-2E family transporter - - - - - - - - - - - - AI-2E_transport DYD2_k127_6083982_0 324602.Caur_2963 4.28e-258 808.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,2G5W2@200795|Chloroflexi,376J5@32061|Chloroflexia 32061|Chloroflexia H Belongs to the PEP-utilizing enzyme family - - 2.7.9.1 ko:K01006 ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200 M00169,M00171,M00172,M00173 R00206 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N DYD2_k127_6090964_0 234267.Acid_4491 0.0 1031.0 COG0653@1|root,COG0653@2|Bacteria,3Y34P@57723|Acidobacteria 57723|Acidobacteria U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA - - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW DYD2_k127_6090964_5 234267.Acid_6018 6.327e-06 51.0 COG0810@1|root,COG0810@2|Bacteria 2|Bacteria M energy transducer activity - - - ko:K02487,ko:K03832,ko:K06596 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko01001,ko02000,ko02022,ko02035 2.C.1.1 - - CarbopepD_reg_2,FabA,KAsynt_C_assoc,Ketoacyl-synt_C,TonB_2,TonB_C,ketoacyl-synt DYD2_k127_6090964_4 1173029.JH980292_gene2288 3.567e-07 59.0 COG0457@1|root,COG0457@2|Bacteria,1GD9N@1117|Cyanobacteria,1HH3D@1150|Oscillatoriales 1117|Cyanobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_2,TPR_8 DYD2_k127_6090964_3 204669.Acid345_3214 5.734e-12 71.0 COG0810@1|root,COG0810@2|Bacteria,3Y58J@57723|Acidobacteria,2JJPH@204432|Acidobacteriia 204432|Acidobacteriia M Gram-negative bacterial TonB protein C-terminal - - - - - - - - - - - - TonB_C DYD2_k127_6090964_2 903818.KI912269_gene465 3.054e-28 128.0 2DMMW@1|root,32SIJ@2|Bacteria,3Y8YH@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_6090964_1 28229.ND2E_0741 6.718e-66 235.0 COG3344@1|root,COG3344@2|Bacteria,1R44F@1224|Proteobacteria,1S05V@1236|Gammaproteobacteria,2Q8FB@267889|Colwelliaceae 1236|Gammaproteobacteria L Reverse transcriptase (RNA-dependent DNA polymerase) - - - - - - - - - - - - RVT_1 DYD2_k127_6092554_0 886293.Sinac_6154 1.599e-129 434.0 COG2866@1|root,COG2866@2|Bacteria,2IXPH@203682|Planctomycetes 203682|Planctomycetes E PFAM Zinc carboxypeptidase - - - - - - - - - - - - Peptidase_M14 DYD2_k127_6092554_1 926566.Terro_3228 8.679e-31 136.0 COG2304@1|root,COG2304@2|Bacteria,3Y38P@57723|Acidobacteria,2JIRN@204432|Acidobacteriia 204432|Acidobacteriia S von Willebrand factor, type A - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA,VWA_2 DYD2_k127_6092554_2 1254432.SCE1572_04835 7.538e-15 76.0 COG0642@1|root,COG0745@1|root,COG2202@1|root,COG3447@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,COG3447@2|Bacteria,1NRP8@1224|Proteobacteria,42M0Y@68525|delta/epsilon subdivisions,2WIR4@28221|Deltaproteobacteria,2YUN4@29|Myxococcales 28221|Deltaproteobacteria T PAS fold - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,PAS_9,Response_reg,RsbRD_N,SBP_bac_3 DYD2_k127_6103467_0 330214.NIDE2876 3.574e-24 115.0 COG2755@1|root,COG2755@2|Bacteria 2|Bacteria E lipolytic protein G-D-S-L family - - - - - - - - - - - - Flg_new,Lipase_GDSL_2 DYD2_k127_6103467_1 398511.BpOF4_06545 4.384e-19 101.0 COG2244@1|root,COG2244@2|Bacteria,1TPSH@1239|Firmicutes,4HAGX@91061|Bacilli,1ZDDM@1386|Bacillus 91061|Bacilli S COG2244 Membrane protein involved in the export of O-antigen and teichoic acid tuaB GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K03328,ko:K16694,ko:K16695 - - - - ko00000,ko02000 2.A.66.2,2.A.66.2.6,2.A.66.2.7 - iYO844.BSU35600 Polysacc_synt_3,Polysacc_synt_C DYD2_k127_6103467_2 1122612.AUBA01000018_gene2684 6.664e-05 48.0 COG3385@1|root,COG3385@2|Bacteria,1QURV@1224|Proteobacteria,2TW56@28211|Alphaproteobacteria,2KEB3@204457|Sphingomonadales 204457|Sphingomonadales L Transposase DDE domain group 1 - - - - - - - - - - - - DDE_Tnp_1_4 DYD2_k127_6106885_0 348824.LPU83_pLPU83a_0117 1.226e-35 144.0 28JU1@1|root,2ZEG0@2|Bacteria,1R34D@1224|Proteobacteria,2TZXW@28211|Alphaproteobacteria,4BHU2@82115|Rhizobiaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_6106885_2 102129.Lepto7375DRAFT_0019 1.878e-07 61.0 COG3170@1|root,COG3170@2|Bacteria,1GDX9@1117|Cyanobacteria 1117|Cyanobacteria NU Tfp pilus assembly protein FimV - - - - - - - - - - - - - DYD2_k127_6106905_5 926566.Terro_3605 4.286e-30 127.0 COG0577@1|root,COG0577@2|Bacteria,3Y32V@57723|Acidobacteria,2JI59@204432|Acidobacteriia 204432|Acidobacteriia V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD2_k127_6106905_0 251229.Chro_3857 4.527e-101 338.0 COG1226@1|root,2ZCE6@2|Bacteria,1FZWR@1117|Cyanobacteria 1117|Cyanobacteria P Ion transport 2 domain protein - - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Ion_trans,Ion_trans_2 DYD2_k127_6106905_4 307480.IW16_06380 3.058e-34 145.0 COG1073@1|root,COG1073@2|Bacteria,4NFRN@976|Bacteroidetes,1HWSK@117743|Flavobacteriia,3ZSMC@59732|Chryseobacterium 976|Bacteroidetes S BAAT / Acyl-CoA thioester hydrolase C terminal - - - - - - - - - - - - Hydrolase_4 DYD2_k127_6106905_7 479434.Sthe_2507 1.659e-11 71.0 COG0346@1|root,COG0622@1|root,COG0346@2|Bacteria,COG0622@2|Bacteria,2G8MU@200795|Chloroflexi 200795|Chloroflexi C PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - - - - - - - - - - DinB_2 DYD2_k127_6106905_2 215803.DB30_6266 7.793e-50 183.0 COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,43AEV@68525|delta/epsilon subdivisions,2X5YA@28221|Deltaproteobacteria,2YUMQ@29|Myxococcales 28221|Deltaproteobacteria S Nitronate monooxygenase - - 1.13.12.16,1.3.1.9 ko:K00459,ko:K02371 ko00061,ko00910,ko01100,ko01212,map00061,map00910,map01100,map01212 M00083 R00025,R04429,R04724,R04955,R04958,R04961,R04966,R04969,R07765 RC00052,RC00076,RC02541,RC02759 ko00000,ko00001,ko00002,ko01000,ko01004 - - - NMO DYD2_k127_6106905_6 1242864.D187_006623 1.758e-14 76.0 COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,43AEV@68525|delta/epsilon subdivisions,2WKWE@28221|Deltaproteobacteria 28221|Deltaproteobacteria S PFAM 2-nitropropane dioxygenase NPD - - 1.3.1.9 ko:K02371 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00083 R04429,R04724,R04955,R04958,R04961,R04966,R04969,R07765 RC00052,RC00076 ko00000,ko00001,ko00002,ko01000,ko01004 - - - NMO DYD2_k127_6106905_3 1379270.AUXF01000002_gene1539 1.086e-49 182.0 2C7E0@1|root,330TX@2|Bacteria,1ZUQG@142182|Gemmatimonadetes 142182|Gemmatimonadetes - - - - - - - - - - - - - - - DYD2_k127_6106905_1 760192.Halhy_3325 9.924e-56 201.0 COG1228@1|root,COG1228@2|Bacteria,4NISN@976|Bacteroidetes,1J19G@117747|Sphingobacteriia 976|Bacteroidetes Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_6110506_0 1510531.JQJJ01000010_gene2442 7.872e-79 267.0 COG0500@1|root,COG0500@2|Bacteria,1QU8V@1224|Proteobacteria,2UB0B@28211|Alphaproteobacteria,3K48K@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria M Methyltransferase domain - - - - - - - - - - - - Methyltransf_31 DYD2_k127_6110506_1 1141663.OOC_09776 9.449e-14 76.0 COG0346@1|root,COG0346@2|Bacteria,1RH6K@1224|Proteobacteria,1S68V@1236|Gammaproteobacteria,3Z9AH@586|Providencia 1236|Gammaproteobacteria E COG0346 Lactoylglutathione lyase and related lyases fosA - 2.5.1.18 ko:K21253,ko:K21264,ko:K21265 - - - - ko00000,ko01000,ko01504 - - - Glyoxalase DYD2_k127_6110506_2 1282360.ABAC460_12530 1.656e-08 56.0 2EQ9M@1|root,33HVS@2|Bacteria,1NM3U@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - Sulfotransfer_2 DYD2_k127_6114388_5 187272.Mlg_0236 7.311e-10 63.0 COG2318@1|root,COG2318@2|Bacteria,1N9J8@1224|Proteobacteria,1T1BN@1236|Gammaproteobacteria 1236|Gammaproteobacteria S DinB family - - - - - - - - - - - - DinB,DinB_2 DYD2_k127_6114388_1 1122599.AUGR01000009_gene2481 1.52e-44 173.0 COG3332@1|root,COG3332@2|Bacteria,1RE1W@1224|Proteobacteria,1S59Q@1236|Gammaproteobacteria,1XJP9@135619|Oceanospirillales 135619|Oceanospirillales S Transport and Golgi organisation 2 - - - - - - - - - - - - TANGO2 DYD2_k127_6114388_0 382464.ABSI01000005_gene1401 2.929e-115 396.0 COG0189@1|root,COG0586@1|root,COG0189@2|Bacteria,COG0586@2|Bacteria,46UXZ@74201|Verrucomicrobia 74201|Verrucomicrobia HJ SNARE associated Golgi protein - - - - - - - - - - - - SNARE_assoc DYD2_k127_6114388_3 700598.Niako_3839 1.77e-35 139.0 2C87P@1|root,32H7J@2|Bacteria,4NS7S@976|Bacteroidetes,1IYAE@117747|Sphingobacteriia 976|Bacteroidetes S DoxX-like family - - - - - - - - - - - - DoxX_2 DYD2_k127_6114388_4 1121448.DGI_0370 6.753e-19 99.0 COG0457@1|root,COG0457@2|Bacteria,1PER6@1224|Proteobacteria,42WBV@68525|delta/epsilon subdivisions,2WSBP@28221|Deltaproteobacteria,2MDCI@213115|Desulfovibrionales 28221|Deltaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_16,TPR_2,TPR_6,TPR_8 DYD2_k127_6114388_2 518766.Rmar_0109 6.031e-43 159.0 COG2273@1|root,COG2273@2|Bacteria,4NHP5@976|Bacteroidetes,1FIXU@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes G Glycosyl hydrolases family 16 - - 3.2.1.73 ko:K01216 - - - - ko00000,ko01000 - - - Glyco_hydro_16 DYD2_k127_6119703_0 639030.JHVA01000001_gene2065 3.636e-14 85.0 COG1807@1|root,COG1807@2|Bacteria 2|Bacteria M 4-amino-4-deoxy-L-arabinose transferase activity - - - - - - - - - - - - PMT_2 DYD2_k127_6120775_0 234267.Acid_5978 5.671e-14 79.0 2EU62@1|root,33MNN@2|Bacteria 2|Bacteria S Domain of unknown function (DUF4384) - - - - - - - - - - - - DUF4384 DYD2_k127_6129220_1 204669.Acid345_1037 9.774e-60 229.0 COG3595@1|root,COG3595@2|Bacteria,3Y97I@57723|Acidobacteria,2JNRB@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - DYD2_k127_6129220_2 204669.Acid345_3530 4.056e-07 63.0 COG3595@1|root,COG3595@2|Bacteria,3Y4HG@57723|Acidobacteria,2JJ7G@204432|Acidobacteriia 204432|Acidobacteriia S Putative adhesin - - - - - - - - - - - - DUF4097 DYD2_k127_6129220_0 1379698.RBG1_1C00001G1080 1.001e-78 288.0 COG2091@1|root,COG2091@2|Bacteria,2NQPA@2323|unclassified Bacteria 2|Bacteria H lysine biosynthetic process via aminoadipic acid - - - - - - - - - - - - CBM9_1 DYD2_k127_6135672_1 1163671.JAGI01000002_gene3516 7.439e-05 46.0 COG1012@1|root,COG1012@2|Bacteria,1TP4S@1239|Firmicutes,247W7@186801|Clostridia,36DK7@31979|Clostridiaceae 186801|Clostridia C Belongs to the aldehyde dehydrogenase family aldA - 1.2.1.32,1.2.1.39,1.2.1.60,1.2.1.85,1.2.1.99 ko:K00146,ko:K00151,ko:K09472,ko:K10217 ko00330,ko00350,ko00360,ko00362,ko00380,ko00622,ko00643,ko01100,ko01120,ko01220,map00330,map00350,map00360,map00362,map00380,map00622,map00643,map01100,map01120,map01220 M00038,M00136,M00533,M00569 R02536,R02762,R03889,R04418,R05353,R07417,R07418 RC00080,RC00218,RC00254 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD2_k127_6135672_0 290397.Adeh_3665 1.509e-313 975.0 COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,42M33@68525|delta/epsilon subdivisions,2WJGS@28221|Deltaproteobacteria,2YU96@29|Myxococcales 28221|Deltaproteobacteria C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate acnA - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C DYD2_k127_613657_2 189753.AXAS01000041_gene2534 9.996e-46 171.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_613657_0 189753.AXAS01000041_gene2534 1.932e-84 291.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_613657_1 189753.AXAS01000041_gene2534 3.475e-73 255.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6143875_2 497964.CfE428DRAFT_6357 2.085e-18 89.0 COG3176@1|root,COG3176@2|Bacteria,46UGN@74201|Verrucomicrobia 74201|Verrucomicrobia S Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_5 DYD2_k127_6143875_0 1173027.Mic7113_0758 1.734e-92 319.0 COG2114@1|root,COG2203@1|root,COG2114@2|Bacteria,COG2203@2|Bacteria,1G4ED@1117|Cyanobacteria,1HA0Q@1150|Oscillatoriales 1117|Cyanobacteria T Belongs to the adenylyl cyclase class-4 guanylyl cyclase family - - - - - - - - - - - - GAF_2,Guanylate_cyc DYD2_k127_6143875_1 331113.SNE_A06750 2.201e-69 241.0 COG0664@1|root,COG1252@1|root,COG0664@2|Bacteria,COG1252@2|Bacteria,2JFCT@204428|Chlamydiae 2|Bacteria C Pyridine nucleotide-disulphide oxidoreductase ndh - 1.6.99.3 ko:K03885,ko:K10716 ko00190,map00190 - - - ko00000,ko00001,ko01000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Abhydrolase_6,CBS,Ion_trans,Pyr_redox_2,cNMP_binding DYD2_k127_6144615_0 251221.35211166 3.052e-58 218.0 COG3191@1|root,COG3191@2|Bacteria 2|Bacteria EQ aminopeptidase activity - - - - - - - - - - - - EF-hand_5 DYD2_k127_6144615_1 749414.SBI_04631 9.367e-54 207.0 COG0488@1|root,COG2319@1|root,COG0488@2|Bacteria,COG2319@2|Bacteria,2GJN3@201174|Actinobacteria 201174|Actinobacteria F WD-40 repeat - - - - - - - - - - - - ANAPC4_WD40,HTH_3,HTH_31,WD40 DYD2_k127_6144618_3 552811.Dehly_0317 4.619e-78 272.0 COG0758@1|root,COG0758@2|Bacteria,2G8FE@200795|Chloroflexi 200795|Chloroflexi L DNA recombination-mediator protein A - - - - - - - - - - - - DNA_processg_A DYD2_k127_6144618_1 861299.J421_1261 1.368e-91 319.0 COG0612@1|root,COG0612@2|Bacteria,1ZT7N@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Peptidase M16 inactive domain - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16_C DYD2_k127_6144618_0 861299.J421_1260 1.42e-116 391.0 COG0612@1|root,COG0612@2|Bacteria,1ZT1J@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Insulinase (Peptidase family M16) - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_6144618_2 1144275.COCOR_00645 2.697e-91 319.0 COG4395@1|root,COG4395@2|Bacteria 2|Bacteria S Tim44 MA20_24770 - - ko:K15539 - - - - ko00000 - - - Tim44 DYD2_k127_6144618_4 391625.PPSIR1_09505 1.5e-22 105.0 COG3762@1|root,COG3762@2|Bacteria,1R61N@1224|Proteobacteria,42QZE@68525|delta/epsilon subdivisions,2WS8W@28221|Deltaproteobacteria,2YW5B@29|Myxococcales 28221|Deltaproteobacteria S Membrane - - - ko:K08988 - - - - ko00000 - - - TPM_phosphatase DYD2_k127_6146452_1 1532558.JL39_00915 2.618e-10 64.0 COG3181@1|root,COG3181@2|Bacteria,1N3HN@1224|Proteobacteria,2UDSB@28211|Alphaproteobacteria,4BAAR@82115|Rhizobiaceae 28211|Alphaproteobacteria S Tripartite tricarboxylate transporter family receptor - - - - - - - - - - - - TctC DYD2_k127_6146452_0 1379698.RBG1_1C00001G0900 4.755e-121 414.0 COG1529@1|root,COG1529@2|Bacteria,2NNTR@2323|unclassified Bacteria 2|Bacteria C Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - 1.17.1.5,1.2.5.3 ko:K03520,ko:K20447,ko:K20448 ko00760,ko01120,map00760,map01120 - R01720,R11168 RC00589,RC02800 ko00000,ko00001,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_6156445_2 240015.ACP_3472 2.696e-72 255.0 COG0583@1|root,COG0583@2|Bacteria,3Y31P@57723|Acidobacteria,2JIC0@204432|Acidobacteriia 204432|Acidobacteriia K Transcriptional regulator, LysR - - - - - - - - - - - - HTH_1,LysR_substrate DYD2_k127_6156445_0 1121406.JAEX01000005_gene3039 1.204e-206 658.0 COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,42M1X@68525|delta/epsilon subdivisions,2WJA2@28221|Deltaproteobacteria,2M9EY@213115|Desulfovibrionales 28221|Deltaproteobacteria H TIGRFAM Acetolactate synthase, large subunit, biosynthetic ilvB - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N DYD2_k127_6156445_3 868864.Dester_0608 4.01e-39 153.0 COG0440@1|root,COG0440@2|Bacteria,2G43A@200783|Aquificae 200783|Aquificae E Acetolactate synthase, small subunit ilvN GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 ko:K01653 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - ACT,ACT_5,ALS_ss_C DYD2_k127_6156445_1 330214.NIDE0999 7.19e-130 419.0 COG0059@1|root,COG0059@2|Bacteria,3J0DW@40117|Nitrospirae 40117|Nitrospirae H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate ilvC - 1.1.1.86 ko:K00053 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R03051,R04439,R04440,R05068,R05069,R05071 RC00726,RC00836,RC00837,RC01726 ko00000,ko00001,ko00002,ko01000 - - - IlvC,IlvN DYD2_k127_6169021_4 795359.TOPB45_0610 2.028e-09 63.0 COG0490@1|root,COG1226@1|root,COG0490@2|Bacteria,COG1226@2|Bacteria,2GH0E@200940|Thermodesulfobacteria 200940|Thermodesulfobacteria P Ion channel - - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Ion_trans_2,TrkA_C,TrkA_N DYD2_k127_6169021_3 387631.Asulf_02222 5.413e-12 72.0 COG1226@1|root,arCOG01958@2157|Archaea,2XT46@28890|Euryarchaeota 28890|Euryarchaeota P COG1226 Kef-type K transport systems pchA1 - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - 3H,Ion_trans_2,TrkA_C,TrkA_N DYD2_k127_6169021_0 204669.Acid345_1065 1.979e-152 514.0 COG0744@1|root,COG0744@2|Bacteria,3Y42I@57723|Acidobacteria,2JI7Q@204432|Acidobacteriia 204432|Acidobacteriia M Transglycosylase - - 2.4.1.129,3.4.16.4 ko:K05365 ko00550,map00550 - R04519 RC00005,RC00049 ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly,Transpeptidase DYD2_k127_6169021_2 86416.Clopa_2404 7.884e-23 102.0 COG0822@1|root,COG0822@2|Bacteria,1V3H9@1239|Firmicutes,24HDD@186801|Clostridia,36I0X@31979|Clostridiaceae 186801|Clostridia C FeS cluster assembly scaffold protein NifU nifU - - ko:K04488 - - - - ko00000 - - - NifU_N DYD2_k127_6169021_1 555079.Toce_1130 6.194e-57 204.0 COG1104@1|root,COG1104@2|Bacteria,1TP21@1239|Firmicutes,24888@186801|Clostridia,42FGX@68295|Thermoanaerobacterales 186801|Clostridia H Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins iscS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 DYD2_k127_6183132_0 266117.Rxyl_1069 3.952e-190 608.0 COG0578@1|root,COG0578@2|Bacteria,2GJKN@201174|Actinobacteria,4CSAD@84995|Rubrobacteria 84995|Rubrobacteria C FAD dependent oxidoreductase - - 1.1.5.3 ko:K00111 ko00564,ko01110,map00564,map01110 - R00848 RC00029 ko00000,ko00001,ko01000 - - - DAO,DAO_C DYD2_k127_6183132_1 861299.J421_1115 2.216e-89 308.0 COG0457@1|root,COG0457@2|Bacteria,1ZTCW@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_6183132_2 234267.Acid_3794 7.683e-59 218.0 COG3266@1|root,COG3266@2|Bacteria,3Y4N4@57723|Acidobacteria 57723|Acidobacteria S FecR protein - - - - - - - - - - - - FecR DYD2_k127_6184546_1 335543.Sfum_1616 1.695e-84 301.0 COG0457@1|root,COG0457@2|Bacteria,1PFBA@1224|Proteobacteria,43755@68525|delta/epsilon subdivisions,2WQN6@28221|Deltaproteobacteria,2MSBR@213462|Syntrophobacterales 28221|Deltaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_8 DYD2_k127_6184546_0 335543.Sfum_1617 5.424e-120 394.0 COG0457@1|root,COG0457@2|Bacteria,1QXGV@1224|Proteobacteria,42RIF@68525|delta/epsilon subdivisions,2WNC6@28221|Deltaproteobacteria 28221|Deltaproteobacteria S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD2_k127_6195807_0 118168.MC7420_1754 8.701e-70 251.0 COG3379@1|root,COG3379@2|Bacteria,1G44K@1117|Cyanobacteria,1HD9A@1150|Oscillatoriales 1117|Cyanobacteria S Type I phosphodiesterase / nucleotide pyrophosphatase - - - - - - - - - - - - Phosphodiest DYD2_k127_6195807_2 28072.Nos7524_1738 2.365e-39 162.0 COG0438@1|root,COG0438@2|Bacteria,1G271@1117|Cyanobacteria,1HPCT@1161|Nostocales 1117|Cyanobacteria M PFAM Glycosyl transferases group 1 icsA - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_6195807_1 118168.MC7420_1754 4.675e-52 194.0 COG3379@1|root,COG3379@2|Bacteria,1G44K@1117|Cyanobacteria,1HD9A@1150|Oscillatoriales 1117|Cyanobacteria S Type I phosphodiesterase / nucleotide pyrophosphatase - - - - - - - - - - - - Phosphodiest DYD2_k127_6199101_2 1303518.CCALI_02739 3.624e-111 364.0 COG0065@1|root,COG0065@2|Bacteria 2|Bacteria E 3-isopropylmalate dehydratase activity leuC GO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009316,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.2.1.33,4.2.1.35 ko:K01703 ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - iEcE24377_1341.EcE24377A_0075,iPC815.YPO0531,iSB619.SA_RS10700 Aconitase DYD2_k127_6199101_1 394503.Ccel_0128 2.442e-123 405.0 COG0473@1|root,COG0473@2|Bacteria,1TPEM@1239|Firmicutes,24A63@186801|Clostridia,36E5F@31979|Clostridiaceae 186801|Clostridia C Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate leuB - 1.1.1.85 ko:K00052 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R00994,R04426,R10052 RC00084,RC00417,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh DYD2_k127_6199101_0 1121920.AUAU01000037_gene2735 9.988e-155 497.0 COG0119@1|root,COG0119@2|Bacteria,3Y2WT@57723|Acidobacteria 57723|Acidobacteria E Belongs to the alpha-IPM synthase homocitrate synthase family - - 2.3.3.13 ko:K01649 ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230 M00432 R01213 RC00004,RC00470,RC02754 br01601,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like DYD2_k127_6199817_1 593117.TGAM_1014 1.988e-45 167.0 COG3839@1|root,arCOG00175@2157|Archaea,2Y7MB@28890|Euryarchaeota 28890|Euryarchaeota E PFAM ABC transporter - - 3.6.3.29,3.6.3.30 ko:K02010,ko:K02017,ko:K02062,ko:K10112,ko:K10199,ko:K17314 ko02010,map02010 M00189,M00190,M00191,M00194,M00196,M00197,M00200,M00201,M00203,M00206,M00207,M00491,M00602,M00604,M00605,M00606 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.1,3.A.1.1.13,3.A.1.1.14,3.A.1.1.15,3.A.1.10,3.A.1.19,3.A.1.8 - - ABC_tran,TOBE_2 DYD2_k127_6199817_0 1134413.ANNK01000114_gene1920 5.269e-124 409.0 COG0673@1|root,COG0673@2|Bacteria 2|Bacteria S inositol 2-dehydrogenase activity - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD2_k127_6199817_2 1532558.JL39_06940 2.779e-37 154.0 COG1840@1|root,COG1840@2|Bacteria,1PGNJ@1224|Proteobacteria,2V7JA@28211|Alphaproteobacteria,4BDDZ@82115|Rhizobiaceae 28211|Alphaproteobacteria P Bacterial extracellular solute-binding protein - - - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - SBP_bac_6 DYD2_k127_6199817_3 545694.TREPR_1963 1.436e-16 82.0 COG2801@1|root,COG2801@2|Bacteria 2|Bacteria L transposition - - - ko:K07497 - - - - ko00000 - - - HTH_29,rve,rve_3 DYD2_k127_6199817_4 382464.ABSI01000020_gene290 1.509e-06 54.0 COG0606@1|root,COG0606@2|Bacteria,46SAK@74201|Verrucomicrobia,2ITTW@203494|Verrucomicrobiae 203494|Verrucomicrobiae O Magnesium chelatase, subunit ChlI C-terminal - - - ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C DYD2_k127_6203225_1 1071073.KI530542_gene3200 0.0009782 49.0 28I6X@1|root,2Z89S@2|Bacteria,1TQMI@1239|Firmicutes,4HD5B@91061|Bacilli,1ZD3B@1386|Bacillus 91061|Bacilli S Domain of unknown function (DUF4350) - - - - - - - - - - - - DUF4350 DYD2_k127_6203225_0 1121335.Clst_2266 8.651e-06 57.0 2BZCW@1|root,32R4U@2|Bacteria,1V7B7@1239|Firmicutes 1239|Firmicutes S Domain of unknown function (DUF4129) - - - - - - - - - - - - DUF4129 DYD2_k127_6206963_0 582515.KR51_00028050 1.871e-146 484.0 COG0277@1|root,COG0277@2|Bacteria,1G1U2@1117|Cyanobacteria 1117|Cyanobacteria C glycolate oxidase subunit glcD glcD - 1.1.3.15 ko:K00104 ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130 - R00475 RC00042 ko00000,ko00001,ko01000 - - - FAD-oxidase_C,FAD_binding_4 DYD2_k127_6208000_6 1297742.A176_04047 0.0007563 44.0 COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,42TQ5@68525|delta/epsilon subdivisions,2WQ0T@28221|Deltaproteobacteria 28221|Deltaproteobacteria V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD2_k127_6208000_4 1196031.ALEG01000041_gene2607 1.628e-21 106.0 COG1680@1|root,COG1680@2|Bacteria,1TR1C@1239|Firmicutes,4HA9Y@91061|Bacilli,1ZQ4R@1386|Bacillus 91061|Bacilli V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD2_k127_6208000_3 861299.J421_0232 9.519e-78 275.0 COG3055@1|root,COG3055@2|Bacteria,1ZUV8@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Galactose oxidase, central domain - - - - - - - - - - - - Kelch_4 DYD2_k127_6208000_2 221288.JH992901_gene3401 7.469e-81 278.0 COG3208@1|root,COG3208@2|Bacteria,1G16V@1117|Cyanobacteria,1JHZI@1189|Stigonemataceae 1117|Cyanobacteria Q Thioesterase domain - - 3.1.2.21 ko:K01071 ko00061,ko01100,map00061,map01100 - R04014,R08157,R08158 RC00014,RC00039 ko00000,ko00001,ko01000,ko01004 - - - Thioesterase DYD2_k127_6208000_0 1174528.JH992898_gene4953 1.288e-159 522.0 COG4615@1|root,COG4615@2|Bacteria,1G2TH@1117|Cyanobacteria,1JKCZ@1189|Stigonemataceae 1117|Cyanobacteria V ABC transporter transmembrane region - - - ko:K06160 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1.113.2 - - ABC_membrane,ABC_tran DYD2_k127_6208000_1 479432.Sros_2189 1.206e-120 403.0 COG0654@1|root,COG0654@2|Bacteria,2GNR6@201174|Actinobacteria,4EMSK@85012|Streptosporangiales 201174|Actinobacteria H FAD binding domain kmo - 1.14.13.9 ko:K00486 ko00380,ko01100,map00380,map01100 M00038 R01960 RC00046 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_3 DYD2_k127_6208000_5 927677.ALVU02000001_gene2678 7.486e-14 74.0 COG2850@1|root,COG2850@2|Bacteria,1G3C8@1117|Cyanobacteria 1117|Cyanobacteria O PFAM Cupin superfamily protein - - 1.14.11.27,1.14.11.30 ko:K10277,ko:K18055 - - - - ko00000,ko01000,ko03036 - - - Cupin_8 DYD2_k127_6211787_4 313589.JNB_19773 5.165e-07 62.0 COG1404@1|root,COG4409@1|root,COG1404@2|Bacteria,COG4409@2|Bacteria,2IA44@201174|Actinobacteria,4FE96@85021|Intrasporangiaceae 201174|Actinobacteria GO Domain of unknown function DUF11 - - - - - - - - - - - - DUF11,P_proprotein,Peptidase_S8 DYD2_k127_6211787_1 1121859.KB890750_gene273 2.926e-14 85.0 COG1572@1|root,COG1572@2|Bacteria 2|Bacteria NU bacterial-type flagellum-dependent cell motility - - - - - - - - - - - - Alpha_L_fucos,CARDB,CHU_C,Calx-beta,DUF4091,F5_F8_type_C,G5,Gram_pos_anchor,PPC,Trypsin_2,YSIRK_signal DYD2_k127_6211787_3 936574.HMPREF1508_1576 8.05e-09 65.0 COG0750@1|root,COG0750@2|Bacteria,1TPMC@1239|Firmicutes,247MT@186801|Clostridia 186801|Clostridia M zinc metalloprotease rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 DYD2_k127_6211787_0 1121459.AQXE01000012_gene2314 1.784e-19 96.0 COG1437@1|root,COG1437@2|Bacteria,1N326@1224|Proteobacteria,42U83@68525|delta/epsilon subdivisions,2WQQR@28221|Deltaproteobacteria,2MBY3@213115|Desulfovibrionales 28221|Deltaproteobacteria F PFAM Adenylate cyclase - - 4.6.1.1 ko:K05873 ko00230,map00230 - R00089,R00434 RC00295 ko00000,ko00001,ko01000 - - - CYTH DYD2_k127_621551_1 195250.CM001776_gene1770 7.193e-41 161.0 COG2197@1|root,COG2197@2|Bacteria,1GHXP@1117|Cyanobacteria,1GZT1@1129|Synechococcus 1117|Cyanobacteria T Bacterial regulatory proteins, luxR family - - - - - - - - - - - - GerE,Response_reg DYD2_k127_621551_0 1296415.JACC01000001_gene3610 5.714e-49 180.0 COG1988@1|root,COG1988@2|Bacteria,4NPMW@976|Bacteroidetes,1I2P2@117743|Flavobacteriia,2YIQT@290174|Aquimarina 976|Bacteroidetes S LexA-binding, inner membrane-associated putative hydrolase - - - ko:K07038 - - - - ko00000 - - - YdjM DYD2_k127_621551_2 925409.KI911562_gene300 7.176e-14 77.0 COG2355@1|root,COG2355@2|Bacteria,4NEBG@976|Bacteroidetes,1IQAA@117747|Sphingobacteriia 976|Bacteroidetes E Membrane dipeptidase (Peptidase family M19) - - 3.4.13.19 ko:K01273 - - - - ko00000,ko00537,ko01000,ko01002,ko04147 - - - Peptidase_M19 DYD2_k127_6228899_1 886293.Sinac_2353 3.749e-74 257.0 COG1641@1|root,COG1641@2|Bacteria,2IXMJ@203682|Planctomycetes 203682|Planctomycetes S Belongs to the LarC family - - 4.99.1.12 ko:K09121 - - - - ko00000,ko01000 - - - DUF111 DYD2_k127_6228899_2 1379698.RBG1_1C00001G0228 3.237e-61 219.0 COG0846@1|root,COG0846@2|Bacteria,2NPJR@2323|unclassified Bacteria 2|Bacteria K NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form cobB GO:0000726,GO:0003674,GO:0003824,GO:0003953,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006464,GO:0006471,GO:0006476,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016787,GO:0016798,GO:0016799,GO:0019213,GO:0019538,GO:0030312,GO:0033554,GO:0033558,GO:0034641,GO:0034979,GO:0035601,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070213,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071944,GO:0090304,GO:0098732,GO:0104004,GO:0140096,GO:1901360,GO:1901564 - ko:K12410 - - - - ko00000,ko01000 - - - SIR2 DYD2_k127_6228899_3 1380370.JIBA01000017_gene2922 9.189e-45 170.0 2FJ66@1|root,34AWA@2|Bacteria,2H9MS@201174|Actinobacteria,4FJGM@85021|Intrasporangiaceae 201174|Actinobacteria - - - - - - - - - - - - - - - DYD2_k127_6228899_0 1267535.KB906767_gene1458 1.067e-185 602.0 COG0018@1|root,COG0018@2|Bacteria,3Y35R@57723|Acidobacteria,2JIAM@204432|Acidobacteriia 204432|Acidobacteriia J Belongs to the class-I aminoacyl-tRNA synthetase family - - 6.1.1.19 ko:K01887 ko00970,map00970 M00359,M00360 R03646 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d DYD2_k127_6228928_0 886293.Sinac_0912 3.426e-127 420.0 COG5276@1|root,COG5276@2|Bacteria,2IXW8@203682|Planctomycetes 203682|Planctomycetes S LVIVD repeat - - - - - - - - - - - - LVIVD DYD2_k127_6228928_1 886293.Sinac_0911 4.69e-50 184.0 COG3827@1|root,COG3827@2|Bacteria,2IXVY@203682|Planctomycetes 203682|Planctomycetes - - - - - - - - - - - - - - - DYD2_k127_6229591_0 215803.DB30_4655 3.155e-122 423.0 COG0577@1|root,COG0577@2|Bacteria,1NREW@1224|Proteobacteria,433ZM@68525|delta/epsilon subdivisions,2X48T@28221|Deltaproteobacteria,2YYI5@29|Myxococcales 1224|Proteobacteria V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD2_k127_6229591_1 1385517.N800_12685 4.696e-24 108.0 COG2304@1|root,COG2304@2|Bacteria,1R7H7@1224|Proteobacteria,1SEG0@1236|Gammaproteobacteria 1236|Gammaproteobacteria E von Willebrand factor (vWF) type A domain - - - - - - - - - - - - VWA,VWA_2 DYD2_k127_6229591_2 1267535.KB906767_gene3964 5.973e-16 91.0 COG3209@1|root,COG3209@2|Bacteria,3Y7FC@57723|Acidobacteria,2JKK9@204432|Acidobacteriia 204432|Acidobacteriia M COG3209 Rhs family protein - - - - - - - - - - - - RHS_repeat DYD2_k127_6229591_5 1267535.KB906767_gene870 2.176e-08 63.0 COG3209@1|root,COG3209@2|Bacteria,3Y7FC@57723|Acidobacteria,2JKK9@204432|Acidobacteriia 204432|Acidobacteriia M COG3209 Rhs family protein - - - - - - - - - - - - RHS_repeat DYD2_k127_6229591_3 489653.NLA_5330 6.31e-14 80.0 COG3210@1|root,COG3210@2|Bacteria,1N97Y@1224|Proteobacteria,2W451@28216|Betaproteobacteria 28216|Betaproteobacteria U Neisseria toxin MafB - - - - - - - - - - - - MafB,PT-HINT DYD2_k127_6256784_7 330214.NIDE2871 1.599e-07 55.0 COG2192@1|root,COG2192@2|Bacteria 2|Bacteria O nodulation nolO - - ko:K00612 - - - - ko00000,ko01000 - - - Carbam_trans_C,Carbam_trans_N DYD2_k127_6256784_5 1191523.MROS_1643 2.944e-16 79.0 2EGPU@1|root,33AFZ@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_6256784_4 93060.P9215_17971 9.918e-17 85.0 2DP8V@1|root,33122@2|Bacteria,1G83J@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_6256784_0 479434.Sthe_3442 2.33e-148 476.0 COG0451@1|root,COG0451@2|Bacteria,2G64F@200795|Chloroflexi,27XSM@189775|Thermomicrobia 2|Bacteria GM 3-beta hydroxysteroid dehydrogenase/isomerase family - - - - - - - - - - - - Epimerase DYD2_k127_6256784_2 671143.DAMO_0194 2.788e-96 344.0 COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,2NNNP@2323|unclassified Bacteria 2|Bacteria D CobQ CobB MinD ParA nucleotide binding domain ywqD - 2.7.10.1 ko:K08252,ko:K13661,ko:K16554,ko:K16692 ko05111,map05111 - - - ko00000,ko00001,ko01000,ko01001,ko02000 8.A.3.1 - - AAA_31,CbiA,GNVR,ParA,Wzz DYD2_k127_6256784_3 370438.PTH_1080 4.859e-56 208.0 COG1091@1|root,COG1091@2|Bacteria,1TP71@1239|Firmicutes,247PG@186801|Clostridia,261FK@186807|Peptococcaceae 186801|Clostridia M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose - - 1.1.1.133 ko:K00067 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R02777 RC00182 ko00000,ko00001,ko00002,ko01000 - - - RmlD_sub_bind DYD2_k127_6256784_1 743719.PaelaDRAFT_5071 5.004e-129 421.0 COG1088@1|root,COG1088@2|Bacteria,1TPWM@1239|Firmicutes,4HA3Y@91061|Bacilli,26RIV@186822|Paenibacillaceae 91061|Bacilli M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily spsJ - 4.2.1.46 ko:K01710 ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130 M00793 R06513 RC00402 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd DYD2_k127_6256784_6 1120965.AUBV01000015_gene1141 3.161e-09 69.0 COG3291@1|root,COG4935@1|root,COG5184@1|root,COG3291@2|Bacteria,COG4935@2|Bacteria,COG5184@2|Bacteria,4NDZC@976|Bacteroidetes,47SFQ@768503|Cytophagia 976|Bacteroidetes O HYR domain - - - - - - - - - - - - CHU_C,Cu-binding_MopE,DUF11,HYR,Laminin_G_3,PKD,SprB DYD2_k127_6264219_2 1121904.ARBP01000052_gene3646 1.093e-29 126.0 COG0627@1|root,COG0627@2|Bacteria,4NIU8@976|Bacteroidetes,47NUH@768503|Cytophagia 976|Bacteroidetes E Putative esterase - - - - - - - - - - - - Esterase DYD2_k127_6264219_0 1047013.AQSP01000121_gene2702 8.322e-134 450.0 COG1574@1|root,COG1574@2|Bacteria,2NNTF@2323|unclassified Bacteria 2|Bacteria S Amidohydrolase family - - - - - - - - - - - - Amidohydro_3 DYD2_k127_6264219_1 671143.DAMO_2354 2.268e-103 343.0 COG1090@1|root,COG1090@2|Bacteria,2NPHC@2323|unclassified Bacteria 2|Bacteria S Domain of unknown function (DUF1731) - - - ko:K07071 - - - - ko00000 - - - DUF1731,Epimerase,Polyketide_cyc DYD2_k127_6267154_2 756272.Plabr_4467 4.388e-64 232.0 COG0530@1|root,COG0530@2|Bacteria,2J283@203682|Planctomycetes 203682|Planctomycetes P COG0530 Ca2 Na antiporter - - - ko:K07301 - - - - ko00000,ko02000 2.A.19.5 - - Na_Ca_ex DYD2_k127_6267154_3 395961.Cyan7425_0947 7.236e-56 200.0 COG2323@1|root,COG2323@2|Bacteria,1G658@1117|Cyanobacteria,3KIXI@43988|Cyanothece 1117|Cyanobacteria S Protein of unknown function (DUF421) - - - - - - - - - - - - DUF421 DYD2_k127_6267154_0 42256.RradSPS_3058 1.727e-115 383.0 COG1503@1|root,COG1503@2|Bacteria 2|Bacteria J translation release factor activity - - - - - - - - - - - - - DYD2_k127_6267154_1 1089553.Tph_c04050 1.572e-76 265.0 COG1032@1|root,COG1032@2|Bacteria,1UYAF@1239|Firmicutes,24D1D@186801|Clostridia,42IC3@68295|Thermoanaerobacterales 186801|Clostridia C B12 binding domain - - - - - - - - - - - - B12-binding,DUF4070,Radical_SAM DYD2_k127_6279622_2 269799.Gmet_2863 1.494e-12 70.0 COG0388@1|root,COG0388@2|Bacteria,1RIQI@1224|Proteobacteria,42T6J@68525|delta/epsilon subdivisions,2WPVY@28221|Deltaproteobacteria 28221|Deltaproteobacteria S PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - - - - - - - - - - CN_hydrolase DYD2_k127_6279622_1 1173025.GEI7407_3105 1.237e-83 287.0 COG0313@1|root,COG0313@2|Bacteria,1G0IF@1117|Cyanobacteria,1H7AW@1150|Oscillatoriales 1117|Cyanobacteria H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA rsmI GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 2.1.1.198 ko:K07056 - - - - ko00000,ko01000,ko03009 - - - TP_methylase DYD2_k127_6279622_0 330214.NIDE3942 3.037e-129 427.0 COG2204@1|root,COG2204@2|Bacteria,3J10B@40117|Nitrospirae 40117|Nitrospirae T Sigma-54 interaction domain - - - ko:K07714 ko02020,map02020 M00500 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_6282445_0 511051.CSE_09940 5.565e-23 107.0 COG0526@1|root,COG0526@2|Bacteria 2|Bacteria CO cell redox homeostasis resA - - ko:K02199 - - - - ko00000,ko03110 - - - AhpC-TSA,Thioredoxin_8 DYD2_k127_6282445_1 118173.KB235910_gene4409 5.683e-13 80.0 COG0457@1|root,COG0457@2|Bacteria,1GQEI@1117|Cyanobacteria,1HI2Q@1150|Oscillatoriales 1117|Cyanobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_17,TPR_2,TPR_6,TPR_8 DYD2_k127_6288231_3 686340.Metal_3938 2.791e-33 132.0 COG1028@1|root,COG1028@2|Bacteria,1MW9A@1224|Proteobacteria,1RMMZ@1236|Gammaproteobacteria,1XG2S@135618|Methylococcales 135618|Methylococcales IQ PFAM short chain dehydrogenase - - - - - - - - - - - - adh_short_C2 DYD2_k127_6288231_4 452662.SJA_C1-23040 3.533e-27 111.0 COG3668@1|root,32ZH9@2|Bacteria,1N7YH@1224|Proteobacteria,2UC0X@28211|Alphaproteobacteria,2K645@204457|Sphingomonadales 204457|Sphingomonadales S Plasmid stabilization - - - - - - - - - - - - - DYD2_k127_6288231_5 588932.JHOF01000018_gene973 1.597e-13 72.0 2EPV2@1|root,33HFI@2|Bacteria,1P4JW@1224|Proteobacteria,2UYBR@28211|Alphaproteobacteria,2KJER@204458|Caulobacterales 204458|Caulobacterales - - - - - - - - - - - - - - - DYD2_k127_6288231_2 1242864.D187_007711 8.434e-118 388.0 COG3569@1|root,COG3569@2|Bacteria,1MVJ9@1224|Proteobacteria,4304Z@68525|delta/epsilon subdivisions,2WVJ8@28221|Deltaproteobacteria,2YV3F@29|Myxococcales 28221|Deltaproteobacteria L Eukaryotic DNA topoisomerase I, catalytic core topI - 5.99.1.2 ko:K03168 - - - - ko00000,ko01000,ko03032,ko03400 - - - Topoisom_I DYD2_k127_6288231_0 1234664.AMRO01000024_gene1917 1.762e-181 579.0 COG0362@1|root,COG0362@2|Bacteria,1TP4I@1239|Firmicutes,4H9NC@91061|Bacilli,1WEEJ@129337|Geobacillus 91061|Bacilli G Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH gnd - 1.1.1.343,1.1.1.44 ko:K00033 ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200 M00004,M00006 R01528,R10221 RC00001,RC00539 ko00000,ko00001,ko00002,ko01000 - - - 6PGD,NAD_binding_2 DYD2_k127_6288231_1 530564.Psta_2907 2.884e-157 509.0 COG0166@1|root,COG0166@2|Bacteria,2IY08@203682|Planctomycetes 203682|Planctomycetes G Belongs to the GPI family - - 5.3.1.9 ko:K01810 ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200 M00001,M00004,M00114 R02739,R02740,R03321 RC00376,RC00563 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGI DYD2_k127_628939_0 1267533.KB906737_gene1791 4.764e-193 612.0 COG1070@1|root,COG1070@2|Bacteria,3Y2V6@57723|Acidobacteria,2JJ35@204432|Acidobacteriia 204432|Acidobacteriia G FGGY family of carbohydrate kinases, N-terminal domain xylB - 2.7.1.17 ko:K00854 ko00040,ko01100,map00040,map01100 M00014 R01639 RC00002,RC00538 ko00000,ko00001,ko00002,ko01000 - - - FGGY_C,FGGY_N DYD2_k127_628939_1 926569.ANT_05060 1.677e-177 563.0 COG2115@1|root,COG2115@2|Bacteria,2G688@200795|Chloroflexi 200795|Chloroflexi G PFAM Xylose isomerase domain protein TIM barrel xylA - 5.3.1.5 ko:K01805 ko00040,ko00051,ko01100,map00040,map00051,map01100 - R00878,R01432 RC00376,RC00516 ko00000,ko00001,ko01000 - - - AP_endonuc_2 DYD2_k127_6289745_1 551115.Aazo_5179 4.022e-79 276.0 COG0337@1|root,COG0337@2|Bacteria,1G03C@1117|Cyanobacteria,1HIJQ@1161|Nostocales 1117|Cyanobacteria E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) aroB - 4.2.3.4 ko:K01735 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03083 RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase DYD2_k127_6289745_0 234267.Acid_1008 4.744e-158 516.0 COG0568@1|root,COG0568@2|Bacteria,3Y2XG@57723|Acidobacteria 57723|Acidobacteria K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth sigA - - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 DYD2_k127_6311288_0 316067.Geob_0533 3.284e-120 395.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,43U2Y@69541|Desulfuromonadales 28221|Deltaproteobacteria T response regulator - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_6311288_1 1423321.AS29_21095 4.359e-28 123.0 COG3206@1|root,COG3206@2|Bacteria,1V8AX@1239|Firmicutes,4HCT2@91061|Bacilli,1ZDP1@1386|Bacillus 91061|Bacilli M Domain of unknown function (DUF4349) - - - - - - - - - - - - DUF4349 DYD2_k127_6311288_2 1121930.AQXG01000008_gene137 4.642e-17 87.0 COG4232@1|root,COG4232@2|Bacteria,4NEW6@976|Bacteroidetes 976|Bacteroidetes CO Cytochrome c biogenesis protein transmembrane region - - 1.8.1.8 ko:K04084 - - - - ko00000,ko01000,ko03110 5.A.1.1 - - DsbC DYD2_k127_6324030_2 583355.Caka_0712 3.934e-20 94.0 COG0617@1|root,COG0617@2|Bacteria,46UER@74201|Verrucomicrobia,3K732@414999|Opitutae 414999|Opitutae J Polynucleotide adenylyltransferase - - 2.7.7.72 ko:K00974 ko03013,map03013 - R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016 - - - HD,PolyA_pol,PolyA_pol_RNAbd DYD2_k127_6324030_1 517418.Ctha_1056 5.001e-115 382.0 COG2957@1|root,COG2957@2|Bacteria,1FD95@1090|Chlorobi 1090|Chlorobi E Belongs to the agmatine deiminase family - - 3.5.3.12 ko:K10536 ko00330,ko01100,map00330,map01100 - R01416 RC00177 ko00000,ko00001,ko01000 - - - PAD_porph DYD2_k127_6324030_0 1267533.KB906736_gene1110 1.538e-130 423.0 COG0388@1|root,COG0388@2|Bacteria,3Y2T9@57723|Acidobacteria,2JI2H@204432|Acidobacteriia 204432|Acidobacteriia S PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - 3.5.1.53 ko:K12251 ko00330,ko01100,map00330,map01100 - R01152 RC00096 ko00000,ko00001,ko01000 - - - CN_hydrolase DYD2_k127_6331218_0 28072.Nos7524_2709 6.011e-164 535.0 COG1808@1|root,COG1808@2|Bacteria,1G3Y7@1117|Cyanobacteria,1HJ64@1161|Nostocales 1117|Cyanobacteria S Domain of unknown function (DUF389) - - - - - - - - - - - - DUF389 DYD2_k127_6331218_1 518766.Rmar_2129 3.491e-146 471.0 COG0334@1|root,COG0334@2|Bacteria,4NEBH@976|Bacteroidetes,1FIWI@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes C Belongs to the Glu Leu Phe Val dehydrogenases family gdhA - 1.4.1.3 ko:K00261 ko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964 M00740 R00243,R00248 RC00006,RC02799 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ELFV_dehydrog,ELFV_dehydrog_N DYD2_k127_633144_0 1382359.JIAL01000001_gene1871 1.234e-92 338.0 COG1629@1|root,COG4771@2|Bacteria,3Y3P9@57723|Acidobacteria,2JHUB@204432|Acidobacteriia 204432|Acidobacteriia P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarboxypepD_reg,Plug DYD2_k127_633144_1 926550.CLDAP_25090 3.524e-44 165.0 COG0454@1|root,COG0456@2|Bacteria,2G95N@200795|Chloroflexi 200795|Chloroflexi K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_10 DYD2_k127_6336948_2 1340493.JNIF01000003_gene4349 2.846e-27 117.0 COG2172@1|root,COG2172@2|Bacteria,3Y4TY@57723|Acidobacteria 57723|Acidobacteria T Histidine kinase-like ATPase domain - - 2.7.11.1 ko:K04757 - - - - ko00000,ko01000,ko01001,ko03021 - - - HATPase_c_2 DYD2_k127_6336948_0 278963.ATWD01000002_gene294 2.576e-36 140.0 COG1366@1|root,COG1366@2|Bacteria,3Y4U6@57723|Acidobacteria,2JJH2@204432|Acidobacteriia 204432|Acidobacteriia T Belongs to the anti-sigma-factor antagonist family - - - ko:K04749 - - - - ko00000,ko03021 - - - STAS DYD2_k127_6336948_1 278963.ATWD01000002_gene294 1.37e-33 133.0 COG1366@1|root,COG1366@2|Bacteria,3Y4U6@57723|Acidobacteria,2JJH2@204432|Acidobacteriia 204432|Acidobacteriia T Belongs to the anti-sigma-factor antagonist family - - - ko:K04749 - - - - ko00000,ko03021 - - - STAS DYD2_k127_6336948_3 330214.NIDE3048 6.918e-18 89.0 COG3216@1|root,COG3216@2|Bacteria,3J1DC@40117|Nitrospirae 40117|Nitrospirae S Uncharacterized protein conserved in bacteria (DUF2062) - - - ko:K09928 - - - - ko00000 - - - DUF2062 DYD2_k127_6336948_4 1340493.JNIF01000003_gene4496 1.913e-17 94.0 COG0457@1|root,COG0457@2|Bacteria,3Y2IP@57723|Acidobacteria 57723|Acidobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16 DYD2_k127_6338847_4 1121439.dsat_1283 3.393e-33 137.0 COG0438@1|root,COG0438@2|Bacteria,1MU9C@1224|Proteobacteria,42T1S@68525|delta/epsilon subdivisions,2WPVE@28221|Deltaproteobacteria,2MG45@213115|Desulfovibrionales 28221|Deltaproteobacteria M Glycosyl transferase 4-like domain - - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_6338847_2 1267535.KB906767_gene2188 1.125e-97 332.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - 6.2.1.30 ko:K01912 ko00360,ko01120,ko05111,map00360,map01120,map05111 - R02539 RC00004,RC00014 ko00000,ko00001,ko01000 - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_6338847_0 234267.Acid_7150 2.355e-294 919.0 COG0673@1|root,COG1063@1|root,COG0673@2|Bacteria,COG1063@2|Bacteria,3Y3WP@57723|Acidobacteria 57723|Acidobacteria E Zinc-binding dehydrogenase - - - - - - - - - - - - ADH_zinc_N,GFO_IDH_MocA DYD2_k127_6338847_1 1267535.KB906767_gene2188 5.853e-116 385.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - 6.2.1.30 ko:K01912 ko00360,ko01120,ko05111,map00360,map01120,map05111 - R02539 RC00004,RC00014 ko00000,ko00001,ko01000 - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD2_k127_6338847_3 1267535.KB906767_gene3210 2.468e-64 233.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_6338847_5 1464048.JNZS01000004_gene1505 3.284e-05 48.0 COG1216@1|root,COG1216@2|Bacteria,2GP1N@201174|Actinobacteria,4DHYU@85008|Micromonosporales 201174|Actinobacteria S Glycosyltransferase like family 2 - - - - - - - - - - - - Glyco_transf_7C,Glycos_transf_2,PIG-L DYD2_k127_6345098_0 1304888.ATWF01000001_gene1691 7.692e-32 139.0 COG5009@1|root,COG5009@2|Bacteria,2GES1@200930|Deferribacteres 200930|Deferribacteres M Penicillin-binding protein OB-like domain - - 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - PCB_OB,Transgly,Transpeptidase DYD2_k127_6345098_1 1232410.KI421421_gene3347 2.355e-17 84.0 2E3KF@1|root,32YIQ@2|Bacteria,1NC3P@1224|Proteobacteria,432P8@68525|delta/epsilon subdivisions,2WY79@28221|Deltaproteobacteria,43VVH@69541|Desulfuromonadales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_6355960_4 1123251.ATWM01000001_gene651 0.0005538 45.0 COG0644@1|root,COG0644@2|Bacteria,2GNH7@201174|Actinobacteria 201174|Actinobacteria C lycopene cyclase crtL - 5.5.1.19 ko:K06443 ko00906,ko01100,ko01110,map00906,map01100,map01110 M00097 R03824,R04801,R05341,R06962,R07856 RC01004,RC01964 ko00000,ko00001,ko00002,ko01000 - - - Lycopene_cycl DYD2_k127_6355960_1 1267535.KB906767_gene3268 9.373e-25 121.0 COG3209@1|root,COG3209@2|Bacteria,3Y7FC@57723|Acidobacteria,2JKK9@204432|Acidobacteriia 204432|Acidobacteriia M COG3209 Rhs family protein - - - - - - - - - - - - RHS_repeat DYD2_k127_6355960_3 1402135.SUH3_08320 2.248e-07 64.0 COG2340@1|root,COG2931@1|root,COG2340@2|Bacteria,COG2931@2|Bacteria,1R62B@1224|Proteobacteria,2U3MK@28211|Alphaproteobacteria,3ZZF6@60136|Sulfitobacter 28211|Alphaproteobacteria Q Domain of unknown function (DUF4214) - - - - - - - - - - - - DUF4214,HemolysinCabind DYD2_k127_6355960_0 682795.AciX8_1765 1.994e-58 224.0 COG3209@1|root,COG3209@2|Bacteria,3Y5Q3@57723|Acidobacteria,2JJZC@204432|Acidobacteriia 204432|Acidobacteriia M COG3209 Rhs family protein - - - - - - - - - - - - RHS_repeat DYD2_k127_6357477_0 138119.DSY3421 1.116e-85 290.0 COG0457@1|root,COG0457@2|Bacteria,1VKAW@1239|Firmicutes 1239|Firmicutes S Tetratricopeptide repeat - - - - - - - - - - - - - DYD2_k127_6358329_0 105559.Nwat_1351 6.065e-91 307.0 COG2010@1|root,COG2863@1|root,COG2010@2|Bacteria,COG2863@2|Bacteria,1MW1W@1224|Proteobacteria,1SYTA@1236|Gammaproteobacteria 1236|Gammaproteobacteria C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - Cytochrom_C,Cytochrome_CBB3 DYD2_k127_6358329_1 1265505.ATUG01000002_gene1885 1.496e-27 123.0 COG0589@1|root,COG0589@2|Bacteria,1MVZS@1224|Proteobacteria,42QGY@68525|delta/epsilon subdivisions,2WKHR@28221|Deltaproteobacteria,2MJDT@213118|Desulfobacterales 28221|Deltaproteobacteria T Universal stress protein family - - - - - - - - - - - - Usp DYD2_k127_6358329_5 525368.HMPREF0591_4201 3e-12 77.0 COG0589@1|root,COG0589@2|Bacteria,2GMFE@201174|Actinobacteria,2343K@1762|Mycobacteriaceae 201174|Actinobacteria T Universal stress protein - - - - - - - - - - - - Usp DYD2_k127_6358329_4 1304275.C41B8_15682 1.518e-17 83.0 COG0039@1|root,COG0039@2|Bacteria,1MV57@1224|Proteobacteria,1RPAX@1236|Gammaproteobacteria 1236|Gammaproteobacteria C Belongs to the LDH MDH superfamily ldh - 1.1.1.27 ko:K00016 ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922 - R00703,R01000,R03104 RC00031,RC00044 ko00000,ko00001,ko01000,ko04147 - - - Ldh_1_C,Ldh_1_N DYD2_k127_6358329_3 1123276.KB893245_gene1230 3.832e-18 90.0 COG4319@1|root,COG4319@2|Bacteria,4NU3P@976|Bacteroidetes,47T7D@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 DYD2_k127_6358329_2 472759.Nhal_1554 1.594e-25 106.0 COG0457@1|root,COG0457@2|Bacteria,1N0A9@1224|Proteobacteria,1RZSZ@1236|Gammaproteobacteria,1X0HU@135613|Chromatiales 135613|Chromatiales S PFAM Tetratricopeptide TPR_4 - - - - - - - - - - - - - DYD2_k127_6360623_0 1111479.AXAR01000002_gene2010 2.939e-135 439.0 COG0012@1|root,COG0012@2|Bacteria,1TPRK@1239|Firmicutes,4H9SQ@91061|Bacilli,277Y5@186823|Alicyclobacillaceae 91061|Bacilli J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner ychF GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - ko:K06942 - - - - ko00000,ko03009 - - - MMR_HSR1,YchF-GTPase_C DYD2_k127_6362422_0 575540.Isop_3122 3.554e-160 513.0 COG0463@1|root,COG0463@2|Bacteria,2J2HF@203682|Planctomycetes 203682|Planctomycetes M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_6362422_2 1268072.PSAB_21895 1.319e-42 168.0 COG1216@1|root,COG1216@2|Bacteria,1UYRR@1239|Firmicutes,4HEJ1@91061|Bacilli,26TD7@186822|Paenibacillaceae 91061|Bacilli S glycosyl transferase family 2 galnac-T15 - - ko:K07011 - - - - ko00000 - - - Glyco_tranf_2_3,Glyco_trans_2_3,Glyco_transf_7C,Glycos_transf_2 DYD2_k127_6362422_1 269797.Mbar_A0237 2.2e-76 268.0 COG0463@1|root,arCOG01381@2157|Archaea,2XYGG@28890|Euryarchaeota 28890|Euryarchaeota M Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD2_k127_6364924_2 330214.NIDE2279 8.315e-21 98.0 COG0582@1|root,COG0582@2|Bacteria 2|Bacteria L DNA integration - - - - - - - - - - - - Phage_integrase DYD2_k127_6364924_1 1382356.JQMP01000003_gene2027 5.319e-29 126.0 COG0412@1|root,COG0412@2|Bacteria,2G9WC@200795|Chloroflexi,27Z94@189775|Thermomicrobia 189775|Thermomicrobia Q Dienelactone hydrolase family - - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH DYD2_k127_6364924_0 1386089.N865_04180 3.339e-118 402.0 COG0642@1|root,COG2205@2|Bacteria,2I2M2@201174|Actinobacteria,4FFYD@85021|Intrasporangiaceae 201174|Actinobacteria T GAF domain - - - - - - - - - - - - DUF3365,GAF_2,HAMP,HATPase_c,HisKA,Response_reg DYD2_k127_6364969_1 204669.Acid345_2199 3.045e-52 192.0 COG1725@1|root,COG1725@2|Bacteria,3Y8PU@57723|Acidobacteria 57723|Acidobacteria K helix_turn_helix gluconate operon transcriptional repressor - - - ko:K07978 - - - - ko00000,ko03000 - - - GntR DYD2_k127_6364969_5 1340493.JNIF01000003_gene4328 7.025e-10 64.0 arCOG13559@1|root,33239@2|Bacteria 2|Bacteria S Protein of unknown function (DUF2721) - - - - - - - - - - - - DUF2721 DYD2_k127_6364969_0 1191523.MROS_0617 5.756e-108 359.0 COG1313@1|root,COG1313@2|Bacteria 2|Bacteria C radical SAM domain protein - - 1.97.1.4 ko:K04070 - - - - ko00000,ko01000 - - - Fer4_12,Fer4_14,Radical_SAM DYD2_k127_6364969_2 317936.Nos7107_1596 2.008e-42 157.0 COG2343@1|root,COG2343@2|Bacteria,1G7U6@1117|Cyanobacteria,1HP52@1161|Nostocales 1117|Cyanobacteria S Domain of unknown function (DUF427) - - - - - - - - - - - - NTP_transf_9 DYD2_k127_6364969_4 1122138.AQUZ01000008_gene3791 7.51e-12 70.0 COG1977@1|root,COG1977@2|Bacteria,2IQBT@201174|Actinobacteria,4DRIH@85009|Propionibacteriales 201174|Actinobacteria H ThiS family - - - ko:K03636 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS DYD2_k127_6364969_3 1565129.JSFF01000028_gene720 5.358e-20 98.0 COG2350@1|root,COG2350@2|Bacteria,1NCHB@1224|Proteobacteria,1SG2M@1236|Gammaproteobacteria,2QC74@267890|Shewanellaceae 1236|Gammaproteobacteria S YCII-related domain - - - - - - - - - - - - YCII DYD2_k127_6367571_1 1254432.SCE1572_44415 1.085e-37 150.0 COG1404@1|root,COG1404@2|Bacteria,1PEJJ@1224|Proteobacteria,438RE@68525|delta/epsilon subdivisions,2X3YD@28221|Deltaproteobacteria,2YXKA@29|Myxococcales 28221|Deltaproteobacteria O Subtilase family - - - - - - - - - - - - Peptidase_S8 DYD2_k127_6367571_0 530564.Psta_0515 4.12e-86 290.0 COG2041@1|root,COG2041@2|Bacteria,2IYS5@203682|Planctomycetes 203682|Planctomycetes S Oxidoreductase, molybdopterin - - - - - - - - - - - - Oxidored_molyb DYD2_k127_6375855_1 62928.azo2391 5.64e-17 89.0 COG0715@1|root,COG0715@2|Bacteria,1NF3S@1224|Proteobacteria,2WEG1@28216|Betaproteobacteria,2KVYA@206389|Rhodocyclales 206389|Rhodocyclales P ABC-type nitrate sulfonate bicarbonate transport - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1_2 DYD2_k127_6375855_0 579405.Dd703_0845 8.396e-44 170.0 COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,1RQ2D@1236|Gammaproteobacteria,2JFAG@204037|Dickeya 1236|Gammaproteobacteria C Catalyzes the reduction of tatronate semialdehyde to D- glycerate garR - 1.1.1.411,1.1.1.60 ko:K00042,ko:K08319 ko00630,ko01100,map00630,map01100 - R01745,R01747 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 DYD2_k127_6375855_3 743722.Sph21_1063 6.526e-11 69.0 COG0583@1|root,COG0583@2|Bacteria,4NGHS@976|Bacteroidetes,1IV48@117747|Sphingobacteriia 976|Bacteroidetes K PFAM LysR cysL - - - - - - - - - - - HTH_1,LysR_substrate DYD2_k127_6375855_2 266117.Rxyl_1585 1.234e-13 73.0 COG0583@1|root,COG0583@2|Bacteria,2GK13@201174|Actinobacteria,4CRCX@84995|Rubrobacteria 84995|Rubrobacteria K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate DYD2_k127_6375855_4 1118054.CAGW01000075_gene3261 5.481e-06 56.0 COG0715@1|root,COG0715@2|Bacteria 2|Bacteria P thiamine-containing compound biosynthetic process - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 DYD2_k127_6381730_2 1121920.AUAU01000024_gene2371 1.532e-35 135.0 COG0422@1|root,COG0422@2|Bacteria,3Y2TX@57723|Acidobacteria 57723|Acidobacteria H Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction - - 4.1.99.17 ko:K03147 ko00730,ko01100,map00730,map01100 M00127 R03472 RC03251,RC03252 ko00000,ko00001,ko00002,ko01000 - - - ThiC-associated,ThiC_Rad_SAM DYD2_k127_6381730_1 518766.Rmar_0078 1.052e-56 204.0 COG0422@1|root,COG0422@2|Bacteria,4NFTF@976|Bacteroidetes,1FJTI@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes H ThiC-associated domain thiC GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 ko:K03147 ko00730,ko01100,map00730,map01100 M00127 R03472 RC03251,RC03252 ko00000,ko00001,ko00002,ko01000 - - - ThiC-associated,ThiC_Rad_SAM DYD2_k127_6381730_0 234267.Acid_3724 2.098e-79 275.0 COG2234@1|root,COG2234@2|Bacteria,3Y4CJ@57723|Acidobacteria 57723|Acidobacteria S PFAM peptidase - - - - - - - - - - - - Peptidase_M28 DYD2_k127_6390011_4 335543.Sfum_3514 1.812e-43 166.0 COG3034@1|root,COG3034@2|Bacteria,1QTMV@1224|Proteobacteria,42W1K@68525|delta/epsilon subdivisions,2X5QE@28221|Deltaproteobacteria,2MS74@213462|Syntrophobacterales 28221|Deltaproteobacteria S L,D-transpeptidase catalytic domain - - - - - - - - - - - - YkuD DYD2_k127_6390011_1 1128421.JAGA01000003_gene3582 2.424e-90 309.0 COG0042@1|root,COG0042@2|Bacteria,2NP3E@2323|unclassified Bacteria 2|Bacteria J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - ko:K05540 - - - - ko00000,ko01000,ko03016 - - - Dus DYD2_k127_6390011_6 392499.Swit_1361 3.328e-10 72.0 COG2989@1|root,COG2989@2|Bacteria,1MV14@1224|Proteobacteria,2TRJ9@28211|Alphaproteobacteria,2K0KA@204457|Sphingomonadales 204457|Sphingomonadales S protein conserved in bacteria - - - ko:K21470 - - - - ko00000,ko01002,ko01011 - - - YkuD DYD2_k127_6390011_3 913325.N799_09285 1.314e-47 180.0 COG0739@1|root,COG0739@2|Bacteria,1RK7E@1224|Proteobacteria,1RYS2@1236|Gammaproteobacteria,1X698@135614|Xanthomonadales 135614|Xanthomonadales M Peptidase family M23 - - - ko:K21472 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23 DYD2_k127_6390011_2 65093.PCC7418_2212 9.789e-70 253.0 COG1252@1|root,COG1252@2|Bacteria,1G26A@1117|Cyanobacteria 1117|Cyanobacteria C NADH dehydrogenase, FAD-containing subunit ndbB - 1.6.99.3 ko:K03885 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyr_redox_2 DYD2_k127_6390011_5 561180.BIFGAL_03899 2.805e-30 122.0 COG0184@1|root,COG0184@2|Bacteria,2IQA0@201174|Actinobacteria,4D10E@85004|Bifidobacteriales 201174|Actinobacteria J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome rpsO GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071944,GO:1990904 - ko:K02956 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S15 DYD2_k127_6390011_0 472175.EL18_02361 1.292e-223 716.0 COG1185@1|root,COG1185@2|Bacteria,1MVB9@1224|Proteobacteria,2TRH3@28211|Alphaproteobacteria,43IV8@69277|Phyllobacteriaceae 28211|Alphaproteobacteria J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction pnp GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 ko:K00962 ko00230,ko00240,ko03018,map00230,map00240,map03018 M00394 R00437,R00438,R00439,R00440 RC02795 ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 - - - KH_1,PNPase,RNase_PH,RNase_PH_C,S1 DYD2_k127_6390011_7 682795.AciX8_3321 4.326e-07 61.0 COG2885@1|root,COG2885@2|Bacteria,3Y310@57723|Acidobacteria,2JI18@204432|Acidobacteriia 204432|Acidobacteriia M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - OmpA DYD2_k127_6390042_0 243231.GSU0686 1.137e-215 687.0 COG1154@1|root,COG1154@2|Bacteria,1MUSJ@1224|Proteobacteria,42M35@68525|delta/epsilon subdivisions,2WIX5@28221|Deltaproteobacteria 28221|Deltaproteobacteria H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,Transket_pyr,Transketolase_C DYD2_k127_6394731_0 379066.GAU_0558 5.563e-178 569.0 COG0646@1|root,COG0685@1|root,COG0646@2|Bacteria,COG0685@2|Bacteria,1ZT6C@142182|Gemmatimonadetes 142182|Gemmatimonadetes H Methylenetetrahydrofolate reductase - - 1.5.1.20,2.1.1.10 ko:K00297,ko:K00547 ko00270,ko00670,ko00720,ko01100,ko01110,ko01120,ko01200,ko01523,map00270,map00670,map00720,map01100,map01110,map01120,map01200,map01523 M00377 R00650,R01224,R07168 RC00003,RC00035,RC00081 ko00000,ko00001,ko00002,ko01000 - - - MTHFR,S-methyl_trans DYD2_k127_6401157_0 240292.Ava_2652 2.6e-30 126.0 COG1572@1|root,COG1572@2|Bacteria,1GBQN@1117|Cyanobacteria,1HN4C@1161|Nostocales 1117|Cyanobacteria NU bacterial-type flagellum-dependent cell motility - - - - - - - - - - - - - DYD2_k127_6401157_2 861299.J421_0074 6.425e-28 118.0 COG0708@1|root,COG0708@2|Bacteria 2|Bacteria L double-stranded DNA 3'-5' exodeoxyribonuclease activity - - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos DYD2_k127_640496_1 204669.Acid345_2092 2.36e-35 138.0 COG0595@1|root,COG0595@2|Bacteria,3Y2NH@57723|Acidobacteria,2JI53@204432|Acidobacteriia 204432|Acidobacteriia S An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay rnj - - ko:K12574 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - Lactamase_B,RMMBL DYD2_k127_640496_0 234267.Acid_3262 3.078e-134 457.0 COG0457@1|root,COG0515@1|root,COG5616@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,COG5616@2|Bacteria 234267.Acid_3262|- S cAMP biosynthetic process - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - - DYD2_k127_6405004_2 404589.Anae109_1211 5.421e-65 232.0 COG0451@1|root,COG0451@2|Bacteria,1MW32@1224|Proteobacteria,42NJT@68525|delta/epsilon subdivisions,2WM7E@28221|Deltaproteobacteria,2YXN2@29|Myxococcales 28221|Deltaproteobacteria GM epimerase dehydratase dfrA - 1.1.1.219 ko:K00091 - - - - ko00000,ko01000 - - - 3Beta_HSD,Epimerase DYD2_k127_6405004_0 1278073.MYSTI_01655 0.0 1296.0 COG0204@1|root,COG1022@1|root,COG3320@1|root,COG0204@2|Bacteria,COG1022@2|Bacteria,COG3320@2|Bacteria,1MU4D@1224|Proteobacteria,42NHQ@68525|delta/epsilon subdivisions,2WJZ5@28221|Deltaproteobacteria,2YU6Q@29|Myxococcales 28221|Deltaproteobacteria IQ Male sterility protein - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C,Acyltransferase,NAD_binding_4,PP-binding,Sterile DYD2_k127_6405004_1 404589.Anae109_1213 4.124e-227 714.0 COG3875@1|root,COG3875@2|Bacteria,1RFFK@1224|Proteobacteria,43957@68525|delta/epsilon subdivisions,2X4BI@28221|Deltaproteobacteria,2YYP6@29|Myxococcales 28221|Deltaproteobacteria S Domain of unknown function (DUF2088) - - - - - - - - - - - - DUF2088 DYD2_k127_6442098_4 926566.Terro_3785 8.328e-22 100.0 COG0793@1|root,COG0793@2|Bacteria,3Y3A7@57723|Acidobacteria,2JHJK@204432|Acidobacteriia 204432|Acidobacteriia M tail specific protease - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 DYD2_k127_6442098_3 118166.JH976537_gene2390 5.124e-22 101.0 COG0816@1|root,COG0816@2|Bacteria,1G5R5@1117|Cyanobacteria,1HB50@1150|Oscillatoriales 1117|Cyanobacteria L Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA - GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - ko:K07447 - - - - ko00000,ko01000 - - - RuvX DYD2_k127_6442098_1 1122176.KB903532_gene2606 2.497e-86 297.0 COG1559@1|root,COG1559@2|Bacteria,4NG17@976|Bacteroidetes 976|Bacteroidetes S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation mltG - - ko:K07082 - - - - ko00000 - - - YceG DYD2_k127_6442098_2 1267533.KB906734_gene4231 1.1e-22 109.0 COG2304@1|root,COG2304@2|Bacteria,3Y30G@57723|Acidobacteria,2JIK2@204432|Acidobacteriia 204432|Acidobacteriia S PFAM von Willebrand factor type A - - - - - - - - - - - - VWA,VWA_2,VWA_3 DYD2_k127_6442098_0 635013.TherJR_1176 9.508e-96 321.0 COG1181@1|root,COG1181@2|Bacteria,1TP2Y@1239|Firmicutes,248CR@186801|Clostridia,26106@186807|Peptococcaceae 186801|Clostridia F Belongs to the D-alanine--D-alanine ligase family ddl - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N DYD2_k127_6442210_1 401053.AciPR4_0426 6.307e-54 198.0 COG0317@1|root,COG0317@2|Bacteria,3Y38Q@57723|Acidobacteria,2JIN0@204432|Acidobacteriia 204432|Acidobacteriia KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance - - 2.7.6.5 ko:K00951 ko00230,map00230 - R00429 RC00002,RC00078 ko00000,ko00001,ko01000 - - - ACT_4,HD_4,RelA_SpoT,TGS DYD2_k127_6442210_3 941449.dsx2_3353 3.762e-46 169.0 COG0251@1|root,COG0251@2|Bacteria,1MZ3J@1224|Proteobacteria,42TSD@68525|delta/epsilon subdivisions,2WQ6E@28221|Deltaproteobacteria,2MCM3@213115|Desulfovibrionales 28221|Deltaproteobacteria J PFAM Endoribonuclease L-PSP - - 3.5.99.10 ko:K09022 - - R11098,R11099 RC03275,RC03354 ko00000,ko01000 - - - Ribonuc_L-PSP DYD2_k127_6442210_4 525897.Dbac_0072 1.051e-21 96.0 COG0227@1|root,COG0227@2|Bacteria,1PTFN@1224|Proteobacteria,42V1S@68525|delta/epsilon subdivisions,2WR85@28221|Deltaproteobacteria,2MD8Z@213115|Desulfovibrionales 28221|Deltaproteobacteria J Belongs to the bacterial ribosomal protein bL28 family rpmB GO:0003674,GO:0003735,GO:0005198 - ko:K02902 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L28 DYD2_k127_6442210_5 269799.Gmet_0815 7.296e-19 100.0 COG0760@1|root,COG0760@2|Bacteria,1MZDK@1224|Proteobacteria,42RVN@68525|delta/epsilon subdivisions,2WNJW@28221|Deltaproteobacteria,43SP4@69541|Desulfuromonadales 28221|Deltaproteobacteria M SurA N-terminal domain - - 5.2.1.8 ko:K03769 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_2,Rotamase_3,SurA_N_3 DYD2_k127_6442210_0 1267580.AF6_0190 4.609e-140 469.0 COG0488@1|root,COG0488@2|Bacteria,1TPAX@1239|Firmicutes,4HBVV@91061|Bacilli,21W9Q@150247|Anoxybacillus 91061|Bacilli S ABC transporter ydiF - - ko:K06158 - - - - ko00000,ko03012 - - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn DYD2_k127_6442210_2 204669.Acid345_3005 4.264e-52 199.0 COG0457@1|root,COG1305@1|root,COG0457@2|Bacteria,COG1305@2|Bacteria,3Y5KB@57723|Acidobacteria,2JHVK@204432|Acidobacteriia 204432|Acidobacteriia E Domain of Unknown Function with PDB structure (DUF3857) - - - - - - - - - - - - DUF3857,Transglut_core DYD2_k127_6453252_0 1123242.JH636436_gene516 3.236e-263 815.0 COG0374@1|root,COG0374@2|Bacteria,2J26C@203682|Planctomycetes 203682|Planctomycetes C Nickel-dependent hydrogenase - - 1.12.99.6 ko:K06281 ko00633,ko01120,map00633,map01120 - R08034 RC00250 ko00000,ko00001,ko01000 - - - NiFeSe_Hases DYD2_k127_6453252_1 234267.Acid_6555 1.711e-83 279.0 COG1740@1|root,COG1740@2|Bacteria,3Y3HS@57723|Acidobacteria 57723|Acidobacteria C NiFe/NiFeSe hydrogenase small subunit C-terminal - - 1.12.99.6 ko:K06282 ko00633,ko01120,map00633,map01120 - R08034 RC00250 ko00000,ko00001,ko01000 - - - NiFe_hyd_SSU_C,Oxidored_q6 DYD2_k127_6465762_5 1454007.JAUG01000005_gene2791 2.308e-36 151.0 COG1404@1|root,COG1404@2|Bacteria 2|Bacteria O Belongs to the peptidase S8 family - - - - - - - - - - - - MAM,Peptidase_S8,SLH,fn3 DYD2_k127_6465762_1 234267.Acid_1863 7.497e-125 411.0 COG4956@1|root,COG4956@2|Bacteria,3Y2RT@57723|Acidobacteria 57723|Acidobacteria S Large family of predicted nucleotide-binding domains - - - - - - - - - - - - TRAM DYD2_k127_6465762_4 1403313.AXBR01000025_gene5004 4.673e-41 160.0 COG1211@1|root,COG1211@2|Bacteria,1V3M7@1239|Firmicutes,4HH2N@91061|Bacilli,1ZCWR@1386|Bacillus 91061|Bacilli I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) ispD GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 ko:K00991 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633 RC00002 ko00000,ko00001,ko00002,ko01000 - - - IspD DYD2_k127_6465762_3 518766.Rmar_1099 2.003e-49 181.0 COG0245@1|root,COG0245@2|Bacteria,4NP0N@976|Bacteroidetes,1FJAC@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes I Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) ispF - 4.6.1.12 ko:K01770 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05637 RC00002,RC01440 ko00000,ko00001,ko00002,ko01000 - - - YgbB DYD2_k127_6465762_0 886293.Sinac_1427 2.461e-132 435.0 COG0213@1|root,COG0213@2|Bacteria,2IY57@203682|Planctomycetes 203682|Planctomycetes F PFAM Glycosyl transferase, family - - 2.4.2.2 ko:K00756 ko00240,ko01100,map00240,map01100 - R01570,R01876,R02296,R02484 RC00063 ko00000,ko00001,ko01000 - - - Glycos_trans_3N,Glycos_transf_3,PYNP_C DYD2_k127_6465762_2 264462.Bd0445 1.404e-94 321.0 COG1744@1|root,COG1744@2|Bacteria,1NGHH@1224|Proteobacteria,42RBQ@68525|delta/epsilon subdivisions,2MTH8@213481|Bdellovibrionales,2WN1W@28221|Deltaproteobacteria 213481|Bdellovibrionales S PFAM Basic membrane lipoprotein - - - ko:K07335 - - - - ko00000 - - - Bmp DYD2_k127_6465762_7 402777.KB235903_gene1065 1.006e-14 76.0 2B1XW@1|root,31UE7@2|Bacteria,1G79D@1117|Cyanobacteria,1HCA0@1150|Oscillatoriales 1117|Cyanobacteria J S23 ribosomal protein - - - - - - - - - - - - 23S_rRNA_IVP DYD2_k127_6465762_6 1194165.CAJF01000004_gene2770 6.85e-28 114.0 COG3845@1|root,COG3845@2|Bacteria,2H7KJ@201174|Actinobacteria,4FKR5@85023|Microbacteriaceae 201174|Actinobacteria S ATPases associated with a variety of cellular activities yufO - 3.6.3.17 ko:K02056 - M00221 - - ko00000,ko00002,ko01000,ko02000 3.A.1.2 - - ABC_tran DYD2_k127_646635_1 1330700.JQNC01000003_gene911 5.667e-71 248.0 COG3258@1|root,COG3258@2|Bacteria,1WMNM@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - Cytochrome_CBB3 DYD2_k127_646635_2 661478.OP10G_0719 1.039e-28 123.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - - - - - - - - - - - Cupredoxin_1 DYD2_k127_646635_0 1379698.RBG1_1C00001G0858 8.69e-85 295.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c petC - - ko:K00413 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002 - - - Cytochrom_C DYD2_k127_646716_3 326427.Cagg_3582 0.0004454 49.0 COG1073@1|root,COG1073@2|Bacteria,2G73I@200795|Chloroflexi,375SM@32061|Chloroflexia 32061|Chloroflexia S X-Pro dipeptidyl-peptidase (S15 family) - - - - - - - - - - - - Hydrolase_4 DYD2_k127_646716_1 404380.Gbem_2984 2.127e-54 212.0 COG1807@1|root,COG1807@2|Bacteria,1NMIZ@1224|Proteobacteria,42RXF@68525|delta/epsilon subdivisions,2WNF1@28221|Deltaproteobacteria,43TBY@69541|Desulfuromonadales 28221|Deltaproteobacteria M PFAM glycosyl transferase family 39 arnT - - - - - - - - - - - PMT,PMT_2 DYD2_k127_646716_0 1499967.BAYZ01000057_gene4676 2.158e-75 264.0 COG0673@1|root,COG0673@2|Bacteria,2NNUQ@2323|unclassified Bacteria 2|Bacteria S Oxidoreductase family, NAD-binding Rossmann fold gnnA - - ko:K09949 - - - - ko00000 - - iAF987.Gmet_2352 GFO_IDH_MocA DYD2_k127_646716_2 1230341.MJ3_09188 2.724e-30 126.0 COG1680@1|root,COG1680@2|Bacteria,1U828@1239|Firmicutes,4HA0Q@91061|Bacilli 91061|Bacilli V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD2_k127_6478454_3 589865.DaAHT2_0974 9.785e-12 66.0 COG0750@1|root,COG0750@2|Bacteria,1MU91@1224|Proteobacteria,42NJ0@68525|delta/epsilon subdivisions,2WJ7A@28221|Deltaproteobacteria,2MIEV@213118|Desulfobacterales 28221|Deltaproteobacteria M SMART PDZ DHR GLGF domain protein rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 DYD2_k127_6478454_0 1157490.EL26_12795 4.251e-120 400.0 COG0743@1|root,COG0743@2|Bacteria,1TP1C@1239|Firmicutes,4HBAV@91061|Bacilli,2788P@186823|Alicyclobacillaceae 91061|Bacilli I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) dxr - 1.1.1.267 ko:K00099 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05688 RC01452 ko00000,ko00001,ko00002,ko01000 - - - DXPR_C,DXP_redisom_C,DXP_reductoisom DYD2_k127_6478454_2 1499967.BAYZ01000078_gene990 9.563e-40 158.0 COG4589@1|root,COG4589@2|Bacteria,2NPVB@2323|unclassified Bacteria 2|Bacteria S Belongs to the CDS family cdsA GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - iSB619.SA_RS06255 CTP_transf_1 DYD2_k127_6478454_1 1487953.JMKF01000070_gene3372 9.094e-53 189.0 COG4636@1|root,COG4636@2|Bacteria,1G2P0@1117|Cyanobacteria,1H6WC@1150|Oscillatoriales 1117|Cyanobacteria T Putative restriction endonuclease - - - - - - - - - - - - Uma2 DYD2_k127_648086_6 1256908.HMPREF0373_01356 7.844e-10 62.0 COG2890@1|root,COG2890@2|Bacteria,1TSMA@1239|Firmicutes,24838@186801|Clostridia,25W1H@186806|Eubacteriaceae 186801|Clostridia J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif prmC - 2.1.1.297 ko:K02493 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03012 - - - MTS,Methyltransf_31 DYD2_k127_648086_2 861299.J421_0340 3.498e-70 247.0 COG3595@1|root,COG3595@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF4097,PA14 DYD2_k127_648086_1 234267.Acid_7425 1.103e-158 512.0 COG0766@1|root,COG0766@2|Bacteria,3Y2IC@57723|Acidobacteria 57723|Acidobacteria M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase DYD2_k127_648086_3 28072.Nos7524_0949 1.165e-55 200.0 COG4636@1|root,COG4636@2|Bacteria,1G5GI@1117|Cyanobacteria,1HS4F@1161|Nostocales 1117|Cyanobacteria S Putative restriction endonuclease - - - - - - - - - - - - Uma2 DYD2_k127_648086_5 1278073.MYSTI_07160 5.097e-40 151.0 COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,42SEH@68525|delta/epsilon subdivisions,2WPB9@28221|Deltaproteobacteria,2Z2ZN@29|Myxococcales 28221|Deltaproteobacteria FG HIT domain hinT - - ko:K02503 - - - - ko00000,ko04147 - - - DcpS_C,HIT DYD2_k127_648086_0 414684.RC1_2822 1.551e-216 684.0 COG1866@1|root,COG1866@2|Bacteria,1MWXN@1224|Proteobacteria,2TRC4@28211|Alphaproteobacteria,2JQSD@204441|Rhodospirillales 204441|Rhodospirillales C Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA pckA - 4.1.1.49 ko:K01610 ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200 M00003,M00170 R00341 RC00002,RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPCK_ATP DYD2_k127_648086_4 1184267.A11Q_79 1.478e-50 187.0 2AY4N@1|root,31Q6J@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_6481646_3 710686.Mycsm_02996 0.000729 44.0 2DPNA@1|root,332RJ@2|Bacteria,2I2PY@201174|Actinobacteria,239ME@1762|Mycobacteriaceae 201174|Actinobacteria - - - - - - - - - - - - - - DUF4190 DYD2_k127_6481646_2 391038.Bphy_4140 2.518e-05 55.0 2BGXF@1|root,32AXE@2|Bacteria,1PXHQ@1224|Proteobacteria,2WCXJ@28216|Betaproteobacteria,1K8P8@119060|Burkholderiaceae 28216|Betaproteobacteria S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 DYD2_k127_6481646_1 1340493.JNIF01000003_gene1773 9.319e-48 177.0 COG1143@1|root,COG1143@2|Bacteria,3Y371@57723|Acidobacteria 57723|Acidobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoI - 1.6.5.3 ko:K00338 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer4,Fer4_7 DYD2_k127_6481646_0 1123242.JH636435_gene2784 1.984e-58 215.0 COG0515@1|root,COG2114@1|root,COG0515@2|Bacteria,COG2114@2|Bacteria,2IYPS@203682|Planctomycetes 203682|Planctomycetes KLT Serine threonine protein kinase - - - - - - - - - - - - Pkinase DYD2_k127_6517765_6 640511.BC1002_4693 7.246e-32 138.0 COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2VP1G@28216|Betaproteobacteria,1K3C0@119060|Burkholderiaceae 28216|Betaproteobacteria P Rieske [2Fe-2S] domain - - - - - - - - - - - - Rieske DYD2_k127_6517765_0 1472716.KBK24_0120330 3.483e-73 258.0 COG0329@1|root,COG0329@2|Bacteria,1NZA1@1224|Proteobacteria,2WB6I@28216|Betaproteobacteria,1KCPZ@119060|Burkholderiaceae 28216|Betaproteobacteria EM Dihydrodipicolinate synthetase family - - - - - - - - - - - - DHDPS DYD2_k127_6517765_2 1500257.JQNM01000014_gene2912 1.564e-62 226.0 COG0715@1|root,COG0715@2|Bacteria,1PKQN@1224|Proteobacteria,2TSRB@28211|Alphaproteobacteria,4BCDD@82115|Rhizobiaceae 28211|Alphaproteobacteria P 4,5-dihydroxyphthalate decarboxylase - - - - - - - - - - - - NMT1 DYD2_k127_6517765_5 1206731.BAGB01000173_gene90 3.595e-43 168.0 COG1028@1|root,COG1028@2|Bacteria,2GIX2@201174|Actinobacteria,4FXDV@85025|Nocardiaceae 201174|Actinobacteria IQ KR domain - - - - - - - - - - - - adh_short_C2 DYD2_k127_6517765_4 222534.KB893683_gene1224 2.322e-47 180.0 COG1028@1|root,COG1028@2|Bacteria,2GIX2@201174|Actinobacteria,4EX2E@85013|Frankiales 201174|Actinobacteria IQ KR domain - - - - - - - - - - - - adh_short_C2 DYD2_k127_6517765_3 521045.Kole_2076 1.1e-55 200.0 COG2080@1|root,COG2080@2|Bacteria,2GCZQ@200918|Thermotogae 200918|Thermotogae C 2Fe-2S -binding domain - - 1.2.5.3 ko:K03518 - - R11168 RC02800 ko00000,ko01000 - - - Fer2,Fer2_2 DYD2_k127_6517765_1 446470.Snas_5605 4.9e-70 246.0 COG0600@1|root,COG0600@2|Bacteria 2|Bacteria P ABC-type nitrate sulfonate bicarbonate transport system permease component - - - ko:K02050 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - BPD_transp_1 DYD2_k127_6517765_7 1123023.JIAI01000003_gene2636 1.801e-17 83.0 COG1116@1|root,COG1116@2|Bacteria,2GN33@201174|Actinobacteria,4E1PS@85010|Pseudonocardiales 201174|Actinobacteria P ATPases associated with a variety of cellular activities - - - ko:K02049 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - AAA_assoc_C,ABC_tran DYD2_k127_6519038_0 1267534.KB906759_gene1947 3.069e-215 680.0 COG1529@1|root,COG1529@2|Bacteria,3Y6BF@57723|Acidobacteria 57723|Acidobacteria C aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - 1.2.5.3 ko:K03520 - - R11168 RC02800 ko00000,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD2_k127_6522384_0 261292.Nit79A3_1487 9.877e-88 304.0 2AM5X@1|root,31C0B@2|Bacteria,1PK3H@1224|Proteobacteria,2W8E1@28216|Betaproteobacteria,374C1@32003|Nitrosomonadales 28216|Betaproteobacteria - - - - - - - - - - - - - - - DYD2_k127_6525217_1 926549.KI421517_gene3311 3.034e-06 53.0 COG1520@1|root,COG3210@1|root,COG3405@1|root,COG1520@2|Bacteria,COG3210@2|Bacteria,COG3405@2|Bacteria,4NNUN@976|Bacteroidetes,47Q36@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - - - - - - - - - - SBBP DYD2_k127_6525217_2 593750.Metfor_0064 0.0002776 53.0 COG2512@1|root,arCOG07813@1|root,arCOG00374@2157|Archaea,arCOG07813@2157|Archaea,2Y76R@28890|Euryarchaeota,2NBE2@224756|Methanomicrobia 224756|Methanomicrobia G Concanavalin A-like lectin/glucanases superfamily - - - - - - - - - - - - Laminin_G_3 DYD2_k127_6525217_0 929703.KE386491_gene2364 4.938e-23 112.0 COG2373@1|root,COG3209@1|root,COG3291@1|root,COG4386@1|root,COG4932@1|root,COG2373@2|Bacteria,COG3209@2|Bacteria,COG3291@2|Bacteria,COG4386@2|Bacteria,COG4932@2|Bacteria,4NJRF@976|Bacteroidetes,47PMY@768503|Cytophagia 976|Bacteroidetes M domain protein - - - - - - - - - - - - CHU_C,PKD DYD2_k127_653488_2 203124.Tery_0797 8.488e-50 182.0 COG0309@1|root,COG0309@2|Bacteria,1G1Z7@1117|Cyanobacteria,1H82T@1150|Oscillatoriales 1117|Cyanobacteria O hydrogenase expression formation protein HypE hypE - - ko:K04655 - - - - ko00000 - - - AIRS,AIRS_C DYD2_k127_653488_0 1382306.JNIM01000001_gene194 1.527e-181 574.0 COG0409@1|root,COG0409@2|Bacteria,2G5MS@200795|Chloroflexi 200795|Chloroflexi O hydrogenase expression formation protein HypD hypD - - ko:K04654 - - - - ko00000 - - - HypD DYD2_k127_653488_1 319003.Bra1253DRAFT_02580 5.274e-58 207.0 COG0279@1|root,COG0279@2|Bacteria,1NVIE@1224|Proteobacteria,2U8QT@28211|Alphaproteobacteria,3JY4C@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria G Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate lpcA - 5.3.1.28 ko:K03271 ko00540,ko01100,map00540,map01100 M00064 R05645,R09768,R09769 RC00434 ko00000,ko00001,ko00002,ko01000,ko01005 - - - SIS_2 DYD2_k127_6547773_3 448385.sce9195 0.0001278 45.0 COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,42V54@68525|delta/epsilon subdivisions,2WSDI@28221|Deltaproteobacteria,2Z0J9@29|Myxococcales 28221|Deltaproteobacteria BQ Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - 3.5.1.98 ko:K11418 ko05034,ko05165,ko05203,map05034,map05165,map05203 - - - ko00000,ko00001,ko01000,ko03036 - - - Hist_deacetyl DYD2_k127_6547773_1 1232410.KI421421_gene3580 2.123e-61 223.0 COG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,42PTX@68525|delta/epsilon subdivisions,2WMQW@28221|Deltaproteobacteria,43TY0@69541|Desulfuromonadales 28221|Deltaproteobacteria M Cytidylyltransferase kdsB - 2.7.7.38 ko:K00979 ko00540,ko01100,map00540,map01100 M00063 R03351,R11396 RC00152,RC00910 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_3 DYD2_k127_6547773_0 555079.Toce_2181 1.573e-217 688.0 COG0504@1|root,COG0504@2|Bacteria,1TP34@1239|Firmicutes,2482E@186801|Clostridia,42F21@68295|Thermoanaerobacterales 186801|Clostridia F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates pyrG - 6.3.4.2 ko:K01937 ko00240,ko01100,map00240,map01100 M00052 R00571,R00573 RC00010,RC00074 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS01075 CTP_synth_N,GATase DYD2_k127_6547773_2 592028.GCWU000321_00657 3.884e-37 143.0 COG2877@1|root,COG2877@2|Bacteria,1TR2G@1239|Firmicutes,4H20D@909932|Negativicutes 909932|Negativicutes M Belongs to the KdsA family kdsA - 2.5.1.55 ko:K01627 ko00540,ko01100,map00540,map01100 M00063 R03254 RC00435 ko00000,ko00001,ko00002,ko01000,ko01005 - - - DAHP_synth_1 DYD2_k127_6549433_0 251229.Chro_1886 1.742e-160 531.0 COG2202@1|root,COG5001@1|root,COG2202@2|Bacteria,COG5001@2|Bacteria,1G0SY@1117|Cyanobacteria,3VIJ3@52604|Pleurocapsales 1117|Cyanobacteria T COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - - - - - - - - - - EAL,FHA,GGDEF,PAS_3,Response_reg DYD2_k127_6549433_1 1463845.JOIG01000012_gene226 1.82e-18 96.0 COG3393@1|root,COG3393@2|Bacteria,2GMD2@201174|Actinobacteria 201174|Actinobacteria S acetyltransferase - - - ko:K06976 - - - - ko00000 - - - Acetyltransf_1,DUF4081,FR47 DYD2_k127_6560622_2 1499968.TCA2_5211 3.609e-07 56.0 COG4980@1|root,COG4980@2|Bacteria,1VFY7@1239|Firmicutes,4HNWV@91061|Bacilli,26ZTC@186822|Paenibacillaceae 91061|Bacilli S general stress protein ytxH - - - - - - - - - - - YtxH DYD2_k127_6560622_0 880072.Desac_0720 9.097e-97 343.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria 28221|Deltaproteobacteria T two component, sigma54 specific, transcriptional regulator, Fis family - - - ko:K07713 ko02020,map02020 M00499 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_6560622_1 204669.Acid345_0034 4.606e-22 97.0 COG2331@1|root,COG2331@2|Bacteria,3Y5KN@57723|Acidobacteria,2JJW0@204432|Acidobacteriia 204432|Acidobacteriia S Regulatory protein, FmdB - - - - - - - - - - - - Zn-ribbon_8 DYD2_k127_6564867_0 1297742.A176_00264 1.224e-162 521.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,2Z2X4@29|Myxococcales 28221|Deltaproteobacteria T Bacterial regulatory protein, Fis family - - - ko:K07713 ko02020,map02020 M00499 - - ko00000,ko00001,ko00002,ko02022 - - - FHA,HTH_8,Response_reg,Sigma54_activat DYD2_k127_6565936_2 234267.Acid_2300 4.502e-09 66.0 COG2373@1|root,COG2373@2|Bacteria,3Y439@57723|Acidobacteria 57723|Acidobacteria S Alpha-2-Macroglobulin - - - ko:K06894 - - - - ko00000 - - - A2M,A2M_N,A2M_N_2,A2M_comp,Thiol-ester_cl DYD2_k127_6565936_0 204669.Acid345_0927 2.247e-53 198.0 COG3234@1|root,COG3234@2|Bacteria,3Y4K7@57723|Acidobacteria,2JMR9@204432|Acidobacteriia 204432|Acidobacteriia S Protein of unknown function (DUF1175) - - - ko:K09934 - - - - ko00000 - - - DUF1175 DYD2_k127_6565936_1 1198114.AciX9_3409 1.887e-09 62.0 arCOG13401@1|root,33MMV@2|Bacteria,3Y5TE@57723|Acidobacteria,2JNR5@204432|Acidobacteriia 204432|Acidobacteriia - - - - - ko:K05826 - M00031,M00763 - - ko00000,ko00001,ko00002 - - - - DYD2_k127_6565936_3 204669.Acid345_0913 5.427e-05 55.0 COG2304@1|root,COG2304@2|Bacteria,3Y98A@57723|Acidobacteria,2JP4V@204432|Acidobacteriia 204432|Acidobacteriia S oxidoreductase activity - - - - - - - - - - - - - DYD2_k127_6565936_4 1120966.AUBU01000013_gene394 0.0006819 50.0 COG1629@1|root,COG1629@2|Bacteria,4PKRK@976|Bacteroidetes,47Y3I@768503|Cytophagia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD2_k127_6571279_0 671143.DAMO_3155 4.267e-87 307.0 COG0845@1|root,COG0845@2|Bacteria,2NPBH@2323|unclassified Bacteria 2|Bacteria M Barrel-sandwich domain of CusB or HlyD membrane-fusion macA_1 - - ko:K02005,ko:K13888 - M00709 - - ko00000,ko00002,ko02000 8.A.1 - - HlyD_D23 DYD2_k127_6571279_3 179408.Osc7112_2507 2.93e-05 53.0 COG3678@1|root,COG3678@2|Bacteria,1G95S@1117|Cyanobacteria,1HD1W@1150|Oscillatoriales 1117|Cyanobacteria NPTU PFAM Uncharacterised protein domain Spy-rel - - - - - - - - - - - - LTXXQ,Metal_resist DYD2_k127_6571279_1 497964.CfE428DRAFT_1388 3.097e-26 118.0 COG1595@1|root,COG1595@2|Bacteria,46STJ@74201|Verrucomicrobia 74201|Verrucomicrobia K Sigma-70 region 2 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD2_k127_6571279_4 1120999.JONM01000002_gene540 0.0001157 51.0 COG5662@1|root,COG5662@2|Bacteria,1MV95@1224|Proteobacteria,2VSSM@28216|Betaproteobacteria 28216|Betaproteobacteria K AntiSigma factor - - - - - - - - - - - - zf-HC2 DYD2_k127_6572115_0 381666.H16_A3140 2.617e-93 308.0 COG3464@1|root,COG3464@2|Bacteria,1MV5J@1224|Proteobacteria,2VKAK@28216|Betaproteobacteria,1K5RX@119060|Burkholderiaceae 28216|Betaproteobacteria L Transposase - - - - - - - - - - - - DDE_Tnp_ISL3,HTH_Tnp_ISL3 DYD2_k127_6572115_2 318996.AXAZ01000008_gene4295 7.073e-17 80.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6572115_1 1040983.AXAE01000011_gene3197 3.929e-24 108.0 COG3439@1|root,COG3439@2|Bacteria,1MZ38@1224|Proteobacteria,2UBVK@28211|Alphaproteobacteria,43MAN@69277|Phyllobacteriaceae 28211|Alphaproteobacteria S Domain of unknown function DUF302 ccrB - - - - - - - - - - - DUF302 DYD2_k127_6575105_2 189753.AXAS01000041_gene2534 4.962e-28 113.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6575105_0 189753.AXAS01000041_gene2534 1.169e-73 261.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6575105_1 1298867.AUES01000085_gene3659 1.106e-48 187.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6575105_3 189753.AXAS01000073_gene7662 3.731e-20 100.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria 28211|Alphaproteobacteria S transport system periplasmic component - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6577081_0 204669.Acid345_1097 4.493e-110 361.0 COG0459@1|root,COG0459@2|Bacteria,3Y37I@57723|Acidobacteria,2JIV1@204432|Acidobacteriia 204432|Acidobacteriia O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groL - - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 DYD2_k127_6577081_2 867903.ThesuDRAFT_00243 1.337e-12 74.0 COG0750@1|root,COG0750@2|Bacteria,1TPMC@1239|Firmicutes,247MT@186801|Clostridia,3WCJ6@538999|Clostridiales incertae sedis 186801|Clostridia M Domain present in PSD-95, Dlg, and ZO-1/2. rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 DYD2_k127_6577081_1 1192034.CAP_7930 3.661e-54 196.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WJ88@28221|Deltaproteobacteria,2YTZW@29|Myxococcales 28221|Deltaproteobacteria T Bacterial regulatory protein, Fis family ntrX - - ko:K13599 ko02020,map02020 M00498 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_6578287_2 204669.Acid345_0751 1.613e-135 446.0 COG2204@1|root,COG2204@2|Bacteria,3Y38J@57723|Acidobacteria,2JICQ@204432|Acidobacteriia 204432|Acidobacteriia T PFAM Response regulator receiver domain - - - ko:K07713 ko02020,map02020 M00499 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_6578287_0 1173024.KI912149_gene5262 8.23e-245 771.0 COG1816@1|root,COG2202@1|root,COG2204@1|root,COG4191@1|root,COG5278@1|root,COG1816@2|Bacteria,COG2202@2|Bacteria,COG2204@2|Bacteria,COG4191@2|Bacteria,COG5278@2|Bacteria,1GK1J@1117|Cyanobacteria,1JKBT@1189|Stigonemataceae 1117|Cyanobacteria T CHASE3 domain - - - - - - - - - - - - CHASE3,HATPase_c,HisKA,PAS_9,Response_reg DYD2_k127_6578287_3 1192868.CAIU01000021_gene3063 4.852e-21 97.0 COG3467@1|root,COG3467@2|Bacteria,1NMEU@1224|Proteobacteria,2USRA@28211|Alphaproteobacteria,43KB7@69277|Phyllobacteriaceae 28211|Alphaproteobacteria S Pyridoxamine 5'-phosphate oxidase - - - ko:K07005 - - - - ko00000 - - - Pyridox_ox_2 DYD2_k127_6578287_7 1449065.JMLL01000011_gene2066 0.0002103 45.0 COG3467@1|root,COG3467@2|Bacteria,1NMEU@1224|Proteobacteria,2USRA@28211|Alphaproteobacteria,43KB7@69277|Phyllobacteriaceae 28211|Alphaproteobacteria S Pyridoxamine 5'-phosphate oxidase - - - ko:K07005 - - - - ko00000 - - - Pyridox_ox_2 DYD2_k127_6578287_1 63737.Npun_F5495 3.197e-158 510.0 COG1253@1|root,COG1253@2|Bacteria,1G16U@1117|Cyanobacteria,1HISP@1161|Nostocales 1117|Cyanobacteria S PFAM CBS domain - - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,CorC_HlyC,DUF21 DYD2_k127_6578287_6 243231.GSU2335 1.875e-11 76.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - - - - - - - - - - Usp DYD2_k127_6578287_4 1296416.JACB01000001_gene3358 4.294e-16 90.0 COG0589@1|root,COG0589@2|Bacteria,4NJ0H@976|Bacteroidetes,1I0HV@117743|Flavobacteriia,2YKRI@290174|Aquimarina 976|Bacteroidetes T Universal stress protein family - - - - - - - - - - - - Usp DYD2_k127_6578287_5 1131813.AQVT01000001_gene4078 1.056e-13 72.0 COG3705@1|root,COG3705@2|Bacteria,1MWIG@1224|Proteobacteria,2TTQ4@28211|Alphaproteobacteria,1JQU7@119045|Methylobacteriaceae 28211|Alphaproteobacteria E PFAM tRNA synthetase class II (G H P and S) hisZ - - ko:K02502 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002 - - - tRNA-synt_His DYD2_k127_6583501_2 1173023.KE650771_gene1099 0.0005401 43.0 COG1403@1|root,COG1403@2|Bacteria,1G7ZB@1117|Cyanobacteria 1117|Cyanobacteria L PFAM HNH endonuclease - - - - - - - - - - - - HNH DYD2_k127_6583501_1 88036.EFJ22735 5.899e-05 51.0 COG0750@1|root,2QT40@2759|Eukaryota,37RG2@33090|Viridiplantae,3GAVR@35493|Streptophyta 35493|Streptophyta M metalloprotease - GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0006950,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009628,GO:0009657,GO:0009658,GO:0009706,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564 - - - - - - - - - - PDZ_2,Peptidase_M50 DYD2_k127_6583501_0 570967.JMLV01000002_gene1923 1.171e-10 69.0 COG4567@1|root,COG4567@2|Bacteria,1RD7J@1224|Proteobacteria,2TSK7@28211|Alphaproteobacteria,2JRWP@204441|Rhodospirillales 204441|Rhodospirillales T Bacterial regulatory protein, Fis family regA - - ko:K15012 ko02020,map02020 M00523 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg DYD2_k127_6587788_1 237368.SCABRO_02565 1.559e-66 232.0 COG1238@1|root,COG1238@2|Bacteria,2J05B@203682|Planctomycetes 203682|Planctomycetes S SNARE associated Golgi protein - - - - - - - - - - - - SNARE_assoc DYD2_k127_6587788_2 1232410.KI421413_gene668 3.653e-64 227.0 COG2518@1|root,COG2518@2|Bacteria,1MXQC@1224|Proteobacteria,42QSI@68525|delta/epsilon subdivisions,2WMNJ@28221|Deltaproteobacteria,43TVI@69541|Desulfuromonadales 28221|Deltaproteobacteria J Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins pcm GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 ko:K00573 - - - - ko00000,ko01000 - - - PCMT DYD2_k127_6587788_0 1232410.KI421413_gene669 3.209e-68 240.0 COG0496@1|root,COG0496@2|Bacteria,1MVHE@1224|Proteobacteria,42N0I@68525|delta/epsilon subdivisions,2WMUX@28221|Deltaproteobacteria,43T33@69541|Desulfuromonadales 28221|Deltaproteobacteria F Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates surE - 3.1.3.5 ko:K03787 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - SurE DYD2_k127_658835_4 66875.JODY01000060_gene3159 1.6e-10 64.0 COG2159@1|root,COG2159@2|Bacteria,2GKG2@201174|Actinobacteria 201174|Actinobacteria S Pfam Amidohydrolase - - - - - - - - - - - - Amidohydro_2 DYD2_k127_658835_2 555779.Dthio_PD0461 9.74e-18 83.0 2E3J3@1|root,32YHH@2|Bacteria,1NCQH@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD2_k127_658835_1 755178.Cyan10605_2912 2.328e-25 107.0 COG5428@1|root,COG5428@2|Bacteria,1G9FN@1117|Cyanobacteria 1117|Cyanobacteria S Protein of unknown function (DUF2283) - - - - - - - - - - - - DUF2283 DYD2_k127_658835_3 1205680.CAKO01000002_gene2546 7.621e-17 83.0 COG2159@1|root,COG2159@2|Bacteria,1N0C7@1224|Proteobacteria,2TRXY@28211|Alphaproteobacteria 28211|Alphaproteobacteria P PFAM amidohydrolase MA20_19310 - - ko:K07045 - - - - ko00000 - - - Amidohydro_2 DYD2_k127_658835_0 1297617.JPJD01000050_gene1926 3.735e-78 279.0 COG0043@1|root,COG0043@2|Bacteria,1TQ6V@1239|Firmicutes,248WY@186801|Clostridia,2697G@186813|unclassified Clostridiales 186801|Clostridia H 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ubiD - - ko:K16874 ko00365,ko01120,map00365,map01120 - R10213 RC03086 ko00000,ko00001 - - - UbiD DYD2_k127_658996_2 204669.Acid345_4448 4.034e-29 128.0 COG1595@1|root,COG1595@2|Bacteria,3Y7TB@57723|Acidobacteria,2JMZD@204432|Acidobacteriia 204432|Acidobacteriia K DNA-templated transcription, initiation - - - ko:K03088 - - - - ko00000,ko03021 - - - - DYD2_k127_658996_0 330214.NIDE0244 6.653e-77 263.0 COG0602@1|root,COG0602@2|Bacteria,3J0M2@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds queE - 4.3.99.3 ko:K10026 ko00790,ko01100,map00790,map01100 - R10002 RC02989 ko00000,ko00001,ko01000,ko03016 - - - Fer4_14,Radical_SAM DYD2_k127_658996_1 945713.IALB_0290 1.078e-58 209.0 COG0603@1|root,COG0603@2|Bacteria 2|Bacteria F Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) queC - 6.3.4.20 ko:K06920 ko00790,ko01100,map00790,map01100 - R09978 RC00959 ko00000,ko00001,ko01000,ko03016 - - iAF987.Gmet_3075 QueC DYD2_k127_6592906_1 1120949.KB903310_gene919 1.327e-67 238.0 COG0612@1|root,COG0612@2|Bacteria,2GJZ3@201174|Actinobacteria,4D9MD@85008|Micromonosporales 201174|Actinobacteria S Peptidase M16 - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_6592906_2 935863.AWZR01000005_gene2180 3.253e-19 97.0 COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,1RN05@1236|Gammaproteobacteria,1X5E6@135614|Xanthomonadales 135614|Xanthomonadales S Insulinase (Peptidase family M16) - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_6592906_0 861299.J421_0915 3.354e-82 295.0 COG0612@1|root,COG0612@2|Bacteria,1ZT9J@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Insulinase (Peptidase family M16) - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD2_k127_6592906_4 700598.Niako_0486 0.0005693 43.0 COG4447@1|root,COG4447@2|Bacteria,4NRP7@976|Bacteroidetes,1IU78@117747|Sphingobacteriia 976|Bacteroidetes UW protein related to plant photosystem II stability assembly factor - - - - - - - - - - - - PSII_BNR DYD2_k127_6598550_0 795666.MW7_0306 1.973e-86 315.0 COG2319@1|root,COG4249@1|root,COG2319@2|Bacteria,COG4249@2|Bacteria,1MWJA@1224|Proteobacteria,2VI8Q@28216|Betaproteobacteria,1K773@119060|Burkholderiaceae 28216|Betaproteobacteria S WD40 repeats - - - - - - - - - - - - NACHT,Pentapeptide,TIR_2,WD40 DYD2_k127_661786_5 485916.Dtox_3597 1.446e-17 81.0 COG0017@1|root,COG0017@2|Bacteria,1TP38@1239|Firmicutes,2484D@186801|Clostridia,2614W@186807|Peptococcaceae 186801|Clostridia J class II (D K and N) asnS - 6.1.1.22 ko:K01893 ko00970,map00970 M00359,M00360 R03648 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon DYD2_k127_661786_2 502025.Hoch_0388 7.145e-41 159.0 COG0500@1|root,COG2226@2|Bacteria,1QX9U@1224|Proteobacteria,43C31@68525|delta/epsilon subdivisions,2X7DP@28221|Deltaproteobacteria,2YW1I@29|Myxococcales 28221|Deltaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_23 DYD2_k127_661786_3 945713.IALB_2664 6.303e-31 128.0 COG1611@1|root,COG1611@2|Bacteria 2|Bacteria S cytokinin biosynthetic process - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox DYD2_k127_661786_1 1122182.KB903834_gene5898 6.949e-85 291.0 COG2013@1|root,COG2013@2|Bacteria,2I9XC@201174|Actinobacteria,4DJFC@85008|Micromonosporales 201174|Actinobacteria S Mitochondrial biogenesis AIM24 - - - - - - - - - - - - AIM24 DYD2_k127_661786_0 562970.Btus_0192 2.546e-99 334.0 COG0010@1|root,COG0010@2|Bacteria,1TR10@1239|Firmicutes,4HAT5@91061|Bacilli,2784I@186823|Alicyclobacillaceae 91061|Bacilli E Belongs to the arginase family rocF GO:0003674,GO:0003824,GO:0004053,GO:0006082,GO:0006520,GO:0006525,GO:0006807,GO:0008150,GO:0008152,GO:0009064,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 3.5.3.1 ko:K01476 ko00220,ko00330,ko01100,ko01110,ko01130,ko01230,ko05146,map00220,map00330,map01100,map01110,map01130,map01230,map05146 M00029,M00134 R00551 RC00024,RC00329 ko00000,ko00001,ko00002,ko01000 - - - Arginase DYD2_k127_661786_4 401053.AciPR4_0259 6.239e-23 99.0 COG1181@1|root,COG1181@2|Bacteria,3Y3HW@57723|Acidobacteria,2JI4N@204432|Acidobacteriia 204432|Acidobacteriia M Belongs to the D-alanine--D-alanine ligase family ddl - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N DYD2_k127_6623887_4 1192034.CAP_2834 2.844e-13 74.0 COG0664@1|root,COG0664@2|Bacteria,1MZZD@1224|Proteobacteria,42QUX@68525|delta/epsilon subdivisions,2WMWV@28221|Deltaproteobacteria,2Z1X0@29|Myxococcales 28221|Deltaproteobacteria K helix_turn_helix, cAMP Regulatory protein - - - ko:K10914 ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111 - - - ko00000,ko00001,ko03000 - - - HTH_Crp_2,cNMP_binding DYD2_k127_6623887_3 1479237.JMLY01000001_gene3006 3.239e-16 83.0 COG3024@1|root,COG3024@2|Bacteria,1NGJ8@1224|Proteobacteria,1SC7M@1236|Gammaproteobacteria,468WS@72275|Alteromonadaceae 1236|Gammaproteobacteria S Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase yacG GO:0003674,GO:0004857,GO:0005488,GO:0008150,GO:0008270,GO:0008657,GO:0010911,GO:0030234,GO:0032780,GO:0042030,GO:0043086,GO:0043167,GO:0043169,GO:0043462,GO:0044092,GO:0046872,GO:0046914,GO:0050790,GO:0051336,GO:0051346,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0072586,GO:0098772,GO:2000371,GO:2000372 - ko:K09862 - - - - ko00000 - - - YacG DYD2_k127_6623887_2 443143.GM18_3977 2.683e-21 101.0 COG0526@1|root,COG0526@2|Bacteria,1N726@1224|Proteobacteria,42U61@68525|delta/epsilon subdivisions,2WQRF@28221|Deltaproteobacteria,43VCD@69541|Desulfuromonadales 28221|Deltaproteobacteria CO PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - AhpC-TSA DYD2_k127_6623887_1 1120973.AQXL01000122_gene179 1.472e-115 389.0 COG0469@1|root,COG0469@2|Bacteria,1TPGG@1239|Firmicutes,4H9VY@91061|Bacilli,2786F@186823|Alicyclobacillaceae 91061|Bacilli G Belongs to the pyruvate kinase family pyk GO:0001871,GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006116,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0030246,GO:0030247,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:2001065 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PEP-utilizers,PK,PK_C DYD2_k127_6623887_0 240015.ACP_2383 1.352e-141 455.0 COG0535@1|root,COG0535@2|Bacteria,3Y3QA@57723|Acidobacteria,2JIAZ@204432|Acidobacteriia 204432|Acidobacteriia S Radical SAM - - - - - - - - - - - - Fer4_12,Fer4_14,Radical_SAM DYD2_k127_6629032_1 487796.Flav2ADRAFT_1527 3.028e-13 81.0 COG2172@1|root,COG2172@2|Bacteria 2|Bacteria T sigma factor antagonist activity - - 2.7.11.1 ko:K04757 - - - - ko00000,ko01000,ko01001,ko03021 - - - HATPase_c_2 DYD2_k127_6629032_2 1121422.AUMW01000020_gene1706 8.623e-07 56.0 COG1366@1|root,COG1366@2|Bacteria,1VXP2@1239|Firmicutes 1239|Firmicutes T STAS domain - - - ko:K06378 - - - - ko00000 - - - STAS,STAS_2 DYD2_k127_6629032_0 509191.AEDB02000086_gene2772 2.356e-44 177.0 COG0784@1|root,COG2206@1|root,COG0784@2|Bacteria,COG2206@2|Bacteria,1UZN2@1239|Firmicutes,248SE@186801|Clostridia,3WIC9@541000|Ruminococcaceae 186801|Clostridia T Domain of unknown function (DUF3369) - - - - - - - - - - - - DUF3369,GAF,GAF_2,HAMP,HD,HD_5,PAS_9,Response_reg DYD2_k127_6629032_3 1283299.AUKG01000001_gene1751 1.25e-06 59.0 COG1716@1|root,COG1716@2|Bacteria,2GNU2@201174|Actinobacteria,4CQB6@84995|Rubrobacteria 84995|Rubrobacteria T Protein of unknown function (DUF2662) - - - - - - - - - - - - DUF3662,FHA DYD2_k127_6629032_4 1321778.HMPREF1982_00054 2.05e-05 50.0 COG0791@1|root,COG0791@2|Bacteria,1V9ZW@1239|Firmicutes,249UE@186801|Clostridia,26CFH@186813|unclassified Clostridiales 186801|Clostridia M Bacterial SH3 domain - - 3.5.1.28 ko:K01447 - - R04112 RC00064,RC00141 ko00000,ko01000 - - - NLPC_P60,SH3_3 DYD2_k127_6646069_0 1173024.KI912151_gene1773 1.032e-192 622.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1JKTF@1189|Stigonemataceae 1117|Cyanobacteria Q Thioesterase domain - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,PilZ,Thioesterase DYD2_k127_6657672_2 1123073.KB899241_gene2971 9.955e-10 68.0 COG0286@1|root,COG0286@2|Bacteria,1MW3A@1224|Proteobacteria,1RRVF@1236|Gammaproteobacteria,1X5F1@135614|Xanthomonadales 135614|Xanthomonadales V COG0286 Type I restriction-modification system methyltransferase subunit - - 2.1.1.72 ko:K03427 - - - - ko00000,ko01000,ko02048 - - - HsdM_N,N6_Mtase DYD2_k127_6657672_1 883126.HMPREF9710_04003 8.297e-18 94.0 2A71T@1|root,30VX5@2|Bacteria,1PX9K@1224|Proteobacteria,2WCRW@28216|Betaproteobacteria,4784B@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF1353) - - - - - - - - - - - - DUF1353 DYD2_k127_6657672_0 247490.KSU1_B0359 1.436e-30 124.0 2DNS7@1|root,32YWC@2|Bacteria,2J0SI@203682|Planctomycetes 203682|Planctomycetes J 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP DYD2_k127_6664457_0 1499967.BAYZ01000118_gene3247 9.13e-84 285.0 COG1189@1|root,COG1189@2|Bacteria,2NPHR@2323|unclassified Bacteria 2|Bacteria J FtsJ-like methyltransferase tlyA GO:0000154,GO:0001510,GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019835,GO:0019836,GO:0022613,GO:0031167,GO:0031640,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035821,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044003,GO:0044004,GO:0044085,GO:0044179,GO:0044237,GO:0044238,GO:0044260,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046483,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.226,2.1.1.227 ko:K06442 - - - - ko00000,ko01000,ko03009 - - - FtsJ,S4 DYD2_k127_6664457_1 671143.DAMO_0325 1.102e-80 278.0 COG0061@1|root,COG0061@2|Bacteria,2NP7T@2323|unclassified Bacteria 2|Bacteria G Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP nadK GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008976,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.23 ko:K00858 ko00760,ko01100,map00760,map01100 - R00104 RC00002,RC00078 ko00000,ko00001,ko01000 - - iEcSMS35_1347.EcSMS35_2767,iHN637.CLJU_RS05480,iLJ478.TM1733,iSB619.SA_RS04895 NAD_kinase DYD2_k127_6664457_2 1229204.AMYY01000001_gene2699 1.531e-20 96.0 COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,2U25U@28211|Alphaproteobacteria 28211|Alphaproteobacteria U Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - ko:K03309 - - - - ko00000 2.A.23 - - SDF DYD2_k127_6667188_5 1128427.KB904821_gene2080 0.0004857 43.0 COG1848@1|root,COG1848@2|Bacteria,1G64K@1117|Cyanobacteria,1HCUB@1150|Oscillatoriales 1117|Cyanobacteria S PIN domain - - - - - - - - - - - - PIN DYD2_k127_6667188_2 1037409.BJ6T_61420 1.044e-69 248.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6667188_4 105559.Nwat_0062 6.8e-06 53.0 2EA6P@1|root,33A4Y@2|Bacteria,1NK01@1224|Proteobacteria,1SIDV@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Putative addiction module component - - - - - - - - - - - - Unstab_antitox DYD2_k127_6667188_3 748247.AZKH_4123 5.621e-11 65.0 COG3668@1|root,COG3668@2|Bacteria,1PUJD@1224|Proteobacteria,2WAUE@28216|Betaproteobacteria,2KZHN@206389|Rhodocyclales 206389|Rhodocyclales S ParE toxin of type II toxin-antitoxin system, parDE - - - - - - - - - - - - ParE_toxin DYD2_k127_6667188_1 189753.AXAS01000041_gene2534 3.55e-74 262.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6667188_0 189753.AXAS01000041_gene2534 3.535e-76 267.0 COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria,3JSYZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind DYD2_k127_6668441_1 1123368.AUIS01000038_gene38 2.578e-30 122.0 COG1926@1|root,COG1926@2|Bacteria,1RAG8@1224|Proteobacteria,1S3SH@1236|Gammaproteobacteria,2NCU9@225057|Acidithiobacillales 225057|Acidithiobacillales S Phosphoribosyl transferase domain - - - - - - - - - - - - Pribosyltran DYD2_k127_6668441_0 670487.Ocepr_2130 1.288e-49 183.0 COG5502@1|root,COG5502@2|Bacteria,1WJW9@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S Uncharacterized conserved protein (DUF2267) - - - - - - - - - - - - DUF2267 DYD2_k127_6676703_3 661478.OP10G_4044 3.684e-11 66.0 COG0618@1|root,COG0618@2|Bacteria 2|Bacteria S phosphoesterase RecJ domain protein nrnA GO:0008150,GO:0040007 2.7.7.72,3.1.13.3,3.1.3.7 ko:K00974,ko:K06881 ko00920,ko01100,ko01120,ko03013,map00920,map01100,map01120,map03013 - R00188,R00508,R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016,ko03400 - - - DHH,DHHA1 DYD2_k127_6676703_1 485913.Krac_2076 3.465e-52 191.0 COG2109@1|root,COG2109@2|Bacteria,2G6Q6@200795|Chloroflexi 200795|Chloroflexi H PFAM ATP corrinoid adenosyltransferase BtuR CobO CobP - - 2.5.1.17 ko:K19221 ko00860,ko01100,map00860,map01100 M00122 R01492,R05220,R07268 RC00533 ko00000,ko00001,ko00002,ko01000 - - - CobA_CobO_BtuR DYD2_k127_6676703_0 1267535.KB906767_gene1747 6.11e-97 325.0 COG0777@1|root,COG0777@2|Bacteria,3Y2U9@57723|Acidobacteria,2JI81@204432|Acidobacteriia 204432|Acidobacteriia I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA accD - 2.1.3.15,6.4.1.2 ko:K01963 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans DYD2_k127_6676703_2 880073.Calab_1924 2.26e-15 78.0 COG0285@1|root,COG0285@2|Bacteria,2NP60@2323|unclassified Bacteria 2|Bacteria H Belongs to the folylpolyglutamate synthase family folC GO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006761,GO:0006807,GO:0008150,GO:0008152,GO:0008841,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046452,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.12,6.3.2.17 ko:K11754 ko00790,ko01100,map00790,map01100 M00126,M00841 R00942,R02237,R04241 RC00064,RC00090,RC00162 ko00000,ko00001,ko00002,ko01000 - - iLJ478.TM0166,iSB619.SA_RS08370 Mur_ligase_C,Mur_ligase_M DYD2_k127_667797_2 648996.Theam_1402 7.984e-43 161.0 COG0194@1|root,COG0194@2|Bacteria,2G3ZQ@200783|Aquificae 200783|Aquificae F Essential for recycling GMP and indirectly, cGMP gmk - 2.7.4.8 ko:K00942 ko00230,ko01100,map00230,map01100 M00050 R00332,R02090 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_kin DYD2_k127_667797_1 608506.COB47_1492 5.861e-57 210.0 COG1561@1|root,COG1561@2|Bacteria,1TQHJ@1239|Firmicutes,24824@186801|Clostridia,42EU9@68295|Thermoanaerobacterales 186801|Clostridia S domain protein yicC - - - - - - - - - - - DUF1732,YicC_N DYD2_k127_667797_0 926566.Terro_2757 1.913e-146 484.0 COG1132@1|root,COG1132@2|Bacteria,3Y2Y9@57723|Acidobacteria,2JI79@204432|Acidobacteriia 204432|Acidobacteriia V ABC transporter - - - ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106 - - ABC_membrane,ABC_tran DYD2_k127_667797_3 1120792.JAFV01000001_gene1597 4.487e-11 66.0 COG0642@1|root,COG0784@1|root,COG1457@1|root,COG0784@2|Bacteria,COG1457@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TQWE@28211|Alphaproteobacteria,36XHI@31993|Methylocystaceae 28211|Alphaproteobacteria T His Kinase A (phosphoacceptor) domain MA20_23075 - - ko:K20971 ko02025,map02025 - - - ko00000,ko00001,ko01001,ko02022 - - - HATPase_c,HisKA,PAS_3,Response_reg DYD2_k127_6679657_2 105559.Nwat_1701 9.233e-19 89.0 COG4805@1|root,COG4805@2|Bacteria,1R5EP@1224|Proteobacteria,1RRS6@1236|Gammaproteobacteria 1236|Gammaproteobacteria S protein conserved in bacteria - - - - - - - - - - - - DUF885 DYD2_k127_6679657_0 326427.Cagg_2595 5.465e-46 172.0 COG0817@1|root,COG0817@2|Bacteria,2G6MA@200795|Chloroflexi,375KP@32061|Chloroflexia 32061|Chloroflexia L Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group ruvC GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 ko:K01159 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvC DYD2_k127_6679657_1 1380350.JIAP01000015_gene4060 2.206e-36 149.0 COG2120@1|root,COG2120@2|Bacteria,1RJX0@1224|Proteobacteria,2UA4M@28211|Alphaproteobacteria,43PF1@69277|Phyllobacteriaceae 28211|Alphaproteobacteria S GlcNAc-PI de-N-acetylase - - - - - - - - - - - - PIG-L DYD2_k127_6681985_0 1267533.KB906734_gene4022 5.345e-123 407.0 COG0438@1|root,COG0438@2|Bacteria,3Y5K5@57723|Acidobacteria,2JNE3@204432|Acidobacteriia 204432|Acidobacteriia M Glycosyl transferases group 1 - - - - - - - - - - - - - DYD2_k127_6681985_1 1499967.BAYZ01000009_gene5269 6.43e-68 251.0 COG0472@1|root,COG0472@2|Bacteria,2NPJ8@2323|unclassified Bacteria 2|Bacteria M Glycosyl transferase family 4 tagO GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0030145,GO:0034645,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0045229,GO:0046872,GO:0046914,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:1901576 2.7.8.33,2.7.8.35 ko:K02851 - - R08856 RC00002 ko00000,ko01000,ko01003,ko01005 - - - Glycos_transf_4 DYD2_k127_6681985_3 671143.DAMO_2346 1.299e-30 137.0 COG0484@1|root,COG3307@1|root,COG0484@2|Bacteria,COG3307@2|Bacteria,2NPHS@2323|unclassified Bacteria 2|Bacteria M O-Antigen ligase - - - ko:K02847 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01005,ko02000 9.B.67.4,9.B.67.5 - - DnaJ,Wzy_C DYD2_k127_6681985_4 985255.APHJ01000021_gene1708 0.0004737 49.0 COG0457@1|root,COG0457@2|Bacteria,4NH2K@976|Bacteroidetes,1I1JW@117743|Flavobacteriia,2P5N8@244698|Gillisia 976|Bacteroidetes S TPR repeat batC - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_17,TPR_2,TPR_8 DYD2_k127_6681985_2 671143.DAMO_1338 2.668e-50 184.0 COG1662@1|root,COG1662@2|Bacteria 2|Bacteria L PFAM IS1 transposase - - - ko:K07480 - - - - ko00000 - - - DDE_Tnp_IS1,DDE_Tnp_IS240 DYD2_k127_6682146_3 748247.AZKH_0540 2.26e-36 141.0 COG5588@1|root,COG5588@2|Bacteria,1MWK3@1224|Proteobacteria,2VMAI@28216|Betaproteobacteria 28216|Betaproteobacteria S Protein of unknown function (DUF1326) - - - - - - - - - - - - DUF1326 DYD2_k127_6682146_1 266117.Rxyl_0427 5.737e-67 237.0 COG5486@1|root,COG5486@2|Bacteria,2IAYZ@201174|Actinobacteria,4CTJ6@84995|Rubrobacteria 84995|Rubrobacteria S Predicted metal-binding integral membrane protein (DUF2182) - - - - - - - - - - - - DUF2182 DYD2_k127_6682146_0 1382359.JIAL01000001_gene3009 8.485e-98 333.0 COG1044@1|root,COG1044@2|Bacteria,3Y2JC@57723|Acidobacteria,2JI2Y@204432|Acidobacteriia 204432|Acidobacteriia M Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxD - 2.3.1.191 ko:K02536 ko00540,ko01100,map00540,map01100 M00060 R04550 RC00039,RC00166 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hexapep,LpxD DYD2_k127_6682146_4 1437882.AZRU01000139_gene1067 1.344e-19 103.0 COG5305@1|root,COG5305@2|Bacteria,1R9UF@1224|Proteobacteria,1S0JK@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Membrane - - - - - - - - - - - - PMT_2 DYD2_k127_6682146_2 215803.DB30_4428 1.167e-47 179.0 COG1028@1|root,COG1028@2|Bacteria,1MU6X@1224|Proteobacteria,42MB9@68525|delta/epsilon subdivisions,2WJ64@28221|Deltaproteobacteria,2YV5Q@29|Myxococcales 28221|Deltaproteobacteria IQ Enoyl-(Acyl carrier protein) reductase - - 1.1.1.304,1.1.1.47,1.1.1.76 ko:K00034,ko:K03366 ko00030,ko00650,ko01120,ko01200,map00030,map00650,map01120,map01200 - R01520,R01521,R02855,R02946,R03707,R09078,R10505 RC00066,RC00205,RC00525 ko00000,ko00001,ko01000 - - - adh_short,adh_short_C2 DYD2_k127_668508_2 1380394.JADL01000003_gene4950 3.674e-30 121.0 COG0665@1|root,COG0665@2|Bacteria,1R40G@1224|Proteobacteria,2U1VU@28211|Alphaproteobacteria,2JRIU@204441|Rhodospirillales 204441|Rhodospirillales E FAD dependent oxidoreductase - - - - - - - - - - - - DAO DYD2_k127_668508_0 1121015.N789_00920 4.721e-45 176.0 COG2199@1|root,COG3706@2|Bacteria,1MZV7@1224|Proteobacteria,1SP18@1236|Gammaproteobacteria,1X5DE@135614|Xanthomonadales 135614|Xanthomonadales T Forkhead associated domain - - - - - - - - - - - - FHA,GGDEF DYD2_k127_668508_1 1158318.ATXC01000001_gene1440 1.244e-32 134.0 COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,2G3UE@200783|Aquificae 200783|Aquificae H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ribBA - 3.5.4.25,4.1.99.12 ko:K14652 ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110 M00125,M00840 R00425,R07281 RC00293,RC01792,RC01815,RC02504 ko00000,ko00001,ko00002,ko01000 - - - DHBP_synthase,GTP_cyclohydro2 DYD2_k127_6687029_7 204669.Acid345_0831 1.832e-07 57.0 COG3746@1|root,COG3746@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Porin_5 DYD2_k127_6687029_1 395495.Lcho_0069 1.066e-131 441.0 COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2VJA1@28216|Betaproteobacteria,1KNUH@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q Multicopper oxidase - - - ko:K14588 - - - - ko00000 - - - Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3 DYD2_k127_6687029_4 697282.Mettu_1186 1.737e-59 213.0 COG1999@1|root,COG1999@2|Bacteria,1R725@1224|Proteobacteria,1S1UW@1236|Gammaproteobacteria,1XFRR@135618|Methylococcales 135618|Methylococcales C SCO1/SenC - - - - - - - - - - - - Cytochrom_C,SCO1-SenC DYD2_k127_6687029_2 247490.KSU1_B0116 1.266e-74 263.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - - DYD2_k127_6687029_0 395495.Lcho_0069 1.053e-140 469.0 COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2VJA1@28216|Betaproteobacteria,1KNUH@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q Multicopper oxidase - - - ko:K14588 - - - - ko00000 - - - Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3 DYD2_k127_6687029_5 697282.Mettu_1186 1.591e-58 211.0 COG1999@1|root,COG1999@2|Bacteria,1R725@1224|Proteobacteria,1S1UW@1236|Gammaproteobacteria,1XFRR@135618|Methylococcales 135618|Methylococcales C SCO1/SenC - - - - - - - - - - - - Cytochrom_C,SCO1-SenC DYD2_k127_6687029_3 247490.KSU1_B0116 4.931e-69 245.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - - DYD2_k127_6687029_8 1300143.CCAV010000002_gene650 2.221e-05 51.0 COG2132@1|root,COG2132@2|Bacteria,4NE3N@976|Bacteroidetes,1HWXY@117743|Flavobacteriia,3ZPYK@59732|Chryseobacterium 976|Bacteroidetes Q Multicopper oxidase - - - - - - - - - - - - Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3 DYD2_k127_6687029_6 639030.JHVA01000001_gene20 8.233e-50 190.0 COG1629@1|root,COG4771@2|Bacteria,3Y6Z9@57723|Acidobacteria,2JKTJ@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD2_k127_6688720_0 760568.Desku_1728 1.336e-72 268.0 COG5421@1|root,COG5421@2|Bacteria,1TPAA@1239|Firmicutes,2492T@186801|Clostridia,262BK@186807|Peptococcaceae 186801|Clostridia L PFAM Transposase - - - - - - - - - - - - DDE_Tnp_1 DYD2_k127_6697909_1 1278073.MYSTI_03333 9.93e-09 61.0 COG0204@1|root,COG0204@2|Bacteria,1PZS9@1224|Proteobacteria,434JR@68525|delta/epsilon subdivisions,2WYX1@28221|Deltaproteobacteria,2Z0U7@29|Myxococcales 28221|Deltaproteobacteria I Phosphate acyltransferases - - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase DYD2_k127_6697909_0 240292.Ava_3052 9e-323 1007.0 COG0646@1|root,COG1410@1|root,COG0646@2|Bacteria,COG1410@2|Bacteria,1G0PS@1117|Cyanobacteria,1HJ4Z@1161|Nostocales 1117|Cyanobacteria H Vitamin B12 dependent methionine synthase activation metH GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0032259,GO:0042084,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 ko:K00548 ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 M00017 R00946,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - B12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans DYD2_k127_669867_1 324057.Pjdr2_1674 1.03e-12 78.0 COG2909@1|root,COG2909@2|Bacteria,1UIMV@1239|Firmicutes,4HD7H@91061|Bacilli,26QDM@186822|Paenibacillaceae 91061|Bacilli K helix_turn_helix, Lux Regulon - - - ko:K03556 - - - - ko00000,ko03000 - - - AAA_22,GerE DYD2_k127_669867_0 323850.Shew_3239 8.895e-77 274.0 COG2373@1|root,COG3055@1|root,COG3386@1|root,COG2373@2|Bacteria,COG3055@2|Bacteria,COG3386@2|Bacteria,1N85X@1224|Proteobacteria,1T3ZR@1236|Gammaproteobacteria,2QEVC@267890|Shewanellaceae 1224|Proteobacteria M PFAM Na-Ca exchanger integrin-beta4 - - - - - - - - - - - - - DYD2_k127_671847_6 1007105.PT7_2494 5.491e-09 63.0 COG0664@1|root,COG0664@2|Bacteria,1RFEJ@1224|Proteobacteria,2VRR4@28216|Betaproteobacteria,3T3SW@506|Alcaligenaceae 28216|Betaproteobacteria K helix_turn_helix, cAMP Regulatory protein - - - ko:K21562,ko:K21563 - - - - ko00000,ko03000 - - - HTH_Crp_2,cNMP_binding DYD2_k127_671847_1 1125863.JAFN01000001_gene2065 1.078e-61 224.0 COG2199@1|root,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,42M4Q@68525|delta/epsilon subdivisions,2X5DU@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Diguanylate cyclase - - - - - - - - - - - iAF987.Gmet_0069 GGDEF,Response_reg DYD2_k127_671847_2 1047013.AQSP01000137_gene553 4.102e-58 214.0 COG1994@1|root,COG1994@2|Bacteria,2NP89@2323|unclassified Bacteria 2|Bacteria S Peptidase family M50 - - - - - - - - - - - - Peptidase_M50 DYD2_k127_671847_5 1340493.JNIF01000003_gene4518 6.036e-33 130.0 COG0776@1|root,COG0776@2|Bacteria,3Y55Y@57723|Acidobacteria 57723|Acidobacteria L Belongs to the bacterial histone-like protein family - - - ko:K03530 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding DYD2_k127_671847_3 234267.Acid_0799 9.704e-47 178.0 COG0681@1|root,COG0681@2|Bacteria,3Y49Z@57723|Acidobacteria 57723|Acidobacteria U Belongs to the peptidase S26 family - - 3.4.21.89 ko:K03100 ko02024,ko03060,map02024,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S24 DYD2_k127_671847_4 234267.Acid_6464 8.211e-44 176.0 COG0457@1|root,COG0457@2|Bacteria 234267.Acid_6464|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_671847_0 338963.Pcar_1613 9.413e-88 295.0 COG0505@1|root,COG0505@2|Bacteria,1MUB9@1224|Proteobacteria,42KZG@68525|delta/epsilon subdivisions,2WIQ5@28221|Deltaproteobacteria,43SCX@69541|Desulfuromonadales 28221|Deltaproteobacteria F Carbamoyl-phosphate synthase small chain, CPSase domain carA - 6.3.5.5 ko:K01956 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_sm_chain,GATase DYD2_k127_6745207_2 1054213.HMPREF9946_01101 6.774e-36 141.0 COG1173@1|root,COG1173@2|Bacteria,1MVHY@1224|Proteobacteria,2TQVQ@28211|Alphaproteobacteria,2JQEY@204441|Rhodospirillales 204441|Rhodospirillales EP N-terminal TM domain of oligopeptide transport permease C - - - ko:K02034 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1,OppC_N DYD2_k127_6745207_0 935840.JAEQ01000016_gene2209 2.745e-132 441.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TS14@28211|Alphaproteobacteria,43MT1@69277|Phyllobacteriaceae 28211|Alphaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - - - - - - - - - - SBP_bac_5 DYD2_k127_6745207_1 485913.Krac_12256 1.472e-51 187.0 COG1012@1|root,COG1012@2|Bacteria,2G5JZ@200795|Chloroflexi 200795|Chloroflexi C Belongs to the aldehyde dehydrogenase family - - - - - - - - - - - - Aldedh DYD2_k127_683459_1 234267.Acid_4894 1.817e-23 108.0 COG2365@1|root,COG2365@2|Bacteria,3Y8BW@57723|Acidobacteria 57723|Acidobacteria T Tyrosine phosphatase family - - - - - - - - - - - - Y_phosphatase2 DYD2_k127_683459_2 1396141.BATP01000047_gene3884 2.064e-09 64.0 COG0824@1|root,COG0824@2|Bacteria,46VXK@74201|Verrucomicrobia,2IUVD@203494|Verrucomicrobiae 203494|Verrucomicrobiae S Thioesterase superfamily - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT DYD2_k127_683459_0 530564.Psta_4503 3.131e-41 158.0 COG0635@1|root,COG0635@2|Bacteria,2IY84@203682|Planctomycetes 203682|Planctomycetes H COG0635 Coproporphyrinogen III oxidase and related Fe-S - - - - - - - - - - - - Radical_SAM DYD2_k127_688343_3 314345.SPV1_11936 2.349e-27 113.0 COG5156@1|root,COG5156@2|Bacteria,1N53Q@1224|Proteobacteria 1224|Proteobacteria DO anaphase-promoting complex-dependent catabolic process - - - - - - - - - - - - F5_F8_type_C DYD2_k127_688343_4 1454004.AW11_03199 1.841e-13 72.0 COG5156@1|root,COG5156@2|Bacteria,1N53Q@1224|Proteobacteria,2W66Z@28216|Betaproteobacteria 28216|Betaproteobacteria DO anaphase-promoting complex-dependent catabolic process - - - - - - - - - - - - - DYD2_k127_688343_1 909613.UO65_0943 2.441e-57 207.0 COG0664@1|root,COG0664@2|Bacteria,2INMI@201174|Actinobacteria,4EBXN@85010|Pseudonocardiales 201174|Actinobacteria K Cyclic nucleotide-monophosphate binding domain - - - ko:K10914 ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111 - - - ko00000,ko00001,ko03000 - - - HTH_Crp_2,cNMP_binding DYD2_k127_688343_2 1121346.KB899861_gene351 2.179e-35 145.0 COG5000@1|root,COG5000@2|Bacteria,1VS6X@1239|Firmicutes,4HA03@91061|Bacilli,26QZW@186822|Paenibacillaceae 91061|Bacilli T Histidine kinase - - 2.7.13.3 ko:K02491 ko02020,map02020 M00485 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,PAS_4 DYD2_k127_688343_0 1116472.MGMO_53c01010 2.23e-125 410.0 COG3239@1|root,COG3239@2|Bacteria,1MY4I@1224|Proteobacteria,1S0IS@1236|Gammaproteobacteria 1236|Gammaproteobacteria I Fatty acid desaturase - - 1.14.19.23,1.14.19.45 ko:K10255 ko02020,map02020 - - - ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase DYD2_k127_688343_5 1254432.SCE1572_51470 1.137e-11 65.0 COG0377@1|root,COG0377@2|Bacteria,1MUI2@1224|Proteobacteria,42MDJ@68525|delta/epsilon subdivisions,2WNNV@28221|Deltaproteobacteria,2Z08H@29|Myxococcales 28221|Deltaproteobacteria C Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoB - 1.6.5.3 ko:K00331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q6 DYD2_k127_689240_0 1382359.JIAL01000001_gene2381 1.89e-184 593.0 COG0322@1|root,COG0322@2|Bacteria,3Y2Y7@57723|Acidobacteria,2JI6E@204432|Acidobacteriia 204432|Acidobacteriia L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision uvrC - - ko:K03703 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - GIY-YIG,HHH_5,UVR,UvrC_HhH_N DYD2_k127_717107_2 401526.TcarDRAFT_0929 1.757e-65 229.0 COG0634@1|root,COG0634@2|Bacteria,1V1C9@1239|Firmicutes,4H4H3@909932|Negativicutes 909932|Negativicutes F Belongs to the purine pyrimidine phosphoribosyltransferase family hpt - 2.4.2.8 ko:K00760 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 - R00190,R01132,R01229,R02142,R08237,R08238,R08245 RC00063,RC00122 ko00000,ko00001,ko01000 - - - Pribosyltran DYD2_k127_717107_1 215803.DB30_1300 1.311e-102 342.0 COG0491@1|root,COG0491@2|Bacteria,1Q2NG@1224|Proteobacteria,4389J@68525|delta/epsilon subdivisions,2X3IZ@28221|Deltaproteobacteria,2YWA6@29|Myxococcales 28221|Deltaproteobacteria S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B DYD2_k127_717107_0 941824.TCEL_00235 3.385e-119 390.0 COG1015@1|root,COG1015@2|Bacteria,1TP70@1239|Firmicutes,247WB@186801|Clostridia,36E24@31979|Clostridiaceae 186801|Clostridia G Phosphotransfer between the C1 and C5 carbon atoms of pentose deoB - 5.4.2.7 ko:K01839 ko00030,ko00230,map00030,map00230 - R01057,R02749 RC00408 ko00000,ko00001,ko01000 - - - Metalloenzyme DYD2_k127_717107_3 638301.HMPREF0444_0542 6.739e-17 81.0 COG1015@1|root,COG1015@2|Bacteria,1TP70@1239|Firmicutes,4H9RU@91061|Bacilli,27FRN@186828|Carnobacteriaceae 91061|Bacilli G Phosphotransfer between the C1 and C5 carbon atoms of pentose deoB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008973,GO:0016853,GO:0016866,GO:0016868,GO:0044424,GO:0044444,GO:0044464 5.4.2.7 ko:K01839 ko00030,ko00230,map00030,map00230 - R01057,R02749 RC00408 ko00000,ko00001,ko01000 - - - Metalloenzyme DYD2_k127_739256_2 1123242.JH636434_gene5302 1.011e-45 177.0 COG1520@1|root,COG1520@2|Bacteria,2IYRB@203682|Planctomycetes 1123242.JH636434_gene5302|- S beta-propeller repeat - - - - - - - - - - - - - DYD2_k127_739256_0 234267.Acid_7338 1.219e-164 531.0 COG1228@1|root,COG1228@2|Bacteria,3Y39J@57723|Acidobacteria 57723|Acidobacteria Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD2_k127_739256_1 926560.KE387023_gene1692 1.606e-133 434.0 COG0667@1|root,COG0667@2|Bacteria,1WJPF@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus C PFAM Aldo keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD2_k127_741236_0 1278073.MYSTI_06568 1.15e-106 364.0 COG0491@1|root,COG0491@2|Bacteria,1MVC3@1224|Proteobacteria,430H1@68525|delta/epsilon subdivisions,2WVZX@28221|Deltaproteobacteria,2YUWZ@29|Myxococcales 28221|Deltaproteobacteria L Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B,NUDIX DYD2_k127_741236_1 1089550.ATTH01000001_gene1592 1.58e-27 113.0 COG1239@1|root,COG1239@2|Bacteria,4NF1J@976|Bacteroidetes,1FIU1@1100069|Bacteroidetes Order II. Incertae sedis 976|Bacteroidetes H magnesium chelatase chlI - 6.6.1.1 ko:K03405 ko00860,ko01100,ko01110,map00860,map01100,map01110 - R03877 RC01012 ko00000,ko00001,ko01000 - - - AAA_5,Sigma54_activat DYD2_k127_742440_3 760192.Halhy_0423 3.562e-27 113.0 COG0659@1|root,COG0659@2|Bacteria,4NF1C@976|Bacteroidetes,1ISE6@117747|Sphingobacteriia 976|Bacteroidetes P Sulfate permease family sulP - - ko:K03321 - - - - ko00000,ko02000 2.A.53.3 - - STAS,Sulfate_transp DYD2_k127_742440_0 880073.Calab_0209 1.59e-85 299.0 COG0493@1|root,COG0493@2|Bacteria 2|Bacteria C 'glutamate synthase - - 1.17.1.9,1.18.1.2,1.19.1.1,1.5.8.1,1.5.8.2,5.2.1.13 ko:K00123,ko:K00317,ko:K00528,ko:K09835 ko00630,ko00680,ko00906,ko01100,ko01110,ko01120,ko01200,map00630,map00680,map00906,map01100,map01110,map01120,map01200 M00097 R00519,R01588,R02511,R07512,R10159 RC00185,RC00556,RC00557,RC00732,RC01960,RC02796 ko00000,ko00001,ko00002,ko01000 - - - Amino_oxidase,Fer4_20,NAD_binding_8,Oxidored_FMN,Pyr_redox_2 DYD2_k127_742440_2 1121937.AUHJ01000050_gene1244 9.335e-31 122.0 COG3328@1|root,COG3328@2|Bacteria,1MU4P@1224|Proteobacteria,1RNB3@1236|Gammaproteobacteria,464M3@72275|Alteromonadaceae 1236|Gammaproteobacteria L Transposase, Mutator family - - - - - - - - - - - - Transposase_mut DYD2_k127_742440_1 391616.OA238_c23710 2.537e-32 126.0 COG3328@1|root,COG3328@2|Bacteria,1MU4P@1224|Proteobacteria 1224|Proteobacteria L Transposase - - - - - - - - - - - - Transposase_mut DYD2_k127_744193_1 204669.Acid345_1347 1.324e-85 290.0 COG1691@1|root,COG1691@2|Bacteria,3Y3BX@57723|Acidobacteria,2JI0G@204432|Acidobacteriia 204432|Acidobacteriia S AIR carboxylase - - - ko:K06898 - - - - ko00000 - - - AIRC DYD2_k127_744193_2 483219.LILAB_02710 1.596e-29 123.0 COG1586@1|root,COG1586@2|Bacteria,1RH88@1224|Proteobacteria,42XUE@68525|delta/epsilon subdivisions,2WT1M@28221|Deltaproteobacteria,2YW1V@29|Myxococcales 28221|Deltaproteobacteria E Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine speH - 4.1.1.50 ko:K01611 ko00270,ko00330,ko01100,map00270,map00330,map01100 M00034,M00133 R00178 RC00299 ko00000,ko00001,ko00002,ko01000 - - - AdoMet_dc DYD2_k127_744193_0 1121920.AUAU01000009_gene1851 1.635e-151 501.0 COG1656@1|root,COG1656@2|Bacteria,3Y4NR@57723|Acidobacteria 57723|Acidobacteria S Domain of unknown function (DUF4178) - - - - - - - - - - - - DUF4178 DYD2_k127_744193_4 1192034.CAP_1496 8.374e-17 82.0 2DI1Z@1|root,301RV@2|Bacteria,1NM7Q@1224|Proteobacteria,433HJ@68525|delta/epsilon subdivisions,2WXZG@28221|Deltaproteobacteria,2Z1QD@29|Myxococcales 28221|Deltaproteobacteria S Domain of Unknown Function (DUF350) - - - - - - - - - - - - DUF350 DYD2_k127_744193_3 595460.RRSWK_06512 1.121e-22 98.0 COG4262@1|root,COG4262@2|Bacteria 2|Bacteria H Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine speE GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.5.1.16 ko:K00797 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R01920,R02869,R08359 RC00021,RC00053 ko00000,ko00001,ko00002,ko01000 - - - Spermine_synth DYD2_k127_751199_0 234267.Acid_3907 5.034e-89 317.0 COG0553@1|root,COG4715@1|root,COG0553@2|Bacteria,COG4715@2|Bacteria,3Y7CF@57723|Acidobacteria 57723|Acidobacteria L SNF2 family N-terminal domain - - - - - - - - - - - - Helicase_C,SNF2_N DYD2_k127_751199_1 314278.NB231_07115 1.244e-29 120.0 COG0784@1|root,COG3829@1|root,COG5002@1|root,COG0784@2|Bacteria,COG3829@2|Bacteria,COG5002@2|Bacteria,1NC9X@1224|Proteobacteria,1T3U3@1236|Gammaproteobacteria,1X2PY@135613|Chromatiales 135613|Chromatiales T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,PAS,Response_reg DYD2_k127_751843_0 1382359.JIAL01000001_gene121 1.226e-65 235.0 COG1770@1|root,COG1770@2|Bacteria,3Y3PK@57723|Acidobacteria,2JIWT@204432|Acidobacteriia 204432|Acidobacteriia E PFAM peptidase S9A prolyl oligopeptidase domain protein beta-propeller - - 3.4.21.83 ko:K01354 ko05142,ko05143,map05142,map05143 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N DYD2_k127_751843_4 633149.Bresu_0306 5.971e-10 63.0 COG0695@1|root,COG0695@2|Bacteria,1N72P@1224|Proteobacteria,2UFM1@28211|Alphaproteobacteria,2KH13@204458|Caulobacterales 204458|Caulobacterales O Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins grxC - - ko:K03676 - - - - ko00000,ko03110 - - - Glutaredoxin DYD2_k127_751843_1 1382359.JIAL01000001_gene1431 2.584e-34 134.0 COG0476@1|root,COG0476@2|Bacteria,3Y3IF@57723|Acidobacteria,2JIPC@204432|Acidobacteriia 204432|Acidobacteriia HP PFAM UBA THIF-type NAD FAD binding - - 2.7.7.80,2.8.1.11 ko:K21147 ko04122,map04122 - R07459,R07461 RC00043 ko00000,ko00001,ko01000 - - - Rhodanese,ThiF,ThiS DYD2_k127_751843_2 227086.JGI_V11_75729 2.467e-26 121.0 28M8C@1|root,2S5PV@2759|Eukaryota 2759|Eukaryota - - - - - - - - - - - - - - - DYD2_k127_765294_0 446470.Snas_2156 1.674e-216 701.0 COG2351@1|root,COG3206@1|root,COG3409@1|root,COG2351@2|Bacteria,COG3206@2|Bacteria,COG3409@2|Bacteria,2H2SD@201174|Actinobacteria,4EZJH@85014|Glycomycetales 201174|Actinobacteria M Salmonella virulence plasmid 28.1kDa A protein - - - - - - - - - - - - VRP1 DYD2_k127_766477_7 289376.THEYE_A1431 1.176e-22 101.0 COG0097@1|root,COG0097@2|Bacteria,3J0JB@40117|Nitrospirae 40117|Nitrospirae J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center rplF GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02933 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L6 DYD2_k127_766477_5 626939.HMPREF9443_01035 1.145e-37 145.0 COG0256@1|root,COG0256@2|Bacteria,1V6DM@1239|Firmicutes,4H4PJ@909932|Negativicutes 909932|Negativicutes J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance rplR - - ko:K02881 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L18p DYD2_k127_766477_2 720554.Clocl_3878 8.602e-62 217.0 COG0098@1|root,COG0098@2|Bacteria,1V1B1@1239|Firmicutes,24G5D@186801|Clostridia,3WICZ@541000|Ruminococcaceae 186801|Clostridia J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body rpsE - - ko:K02988 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S5,Ribosomal_S5_C DYD2_k127_766477_8 639030.JHVA01000001_gene1536 8.124e-15 76.0 COG1841@1|root,COG1841@2|Bacteria,3Y5I2@57723|Acidobacteria,2JJZB@204432|Acidobacteriia 204432|Acidobacteriia J Ribosomal protein L30 rpmD - - ko:K02907 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L30 DYD2_k127_766477_4 273068.TTE2273 1.745e-46 171.0 COG0200@1|root,COG0200@2|Bacteria,1V3KE@1239|Firmicutes,24HAJ@186801|Clostridia,42G84@68295|Thermoanaerobacterales 186801|Clostridia J Binds to the 23S rRNA rplO - - ko:K02876 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27A DYD2_k127_766477_0 1340493.JNIF01000003_gene3227 8.374e-157 507.0 COG0201@1|root,COG0201@2|Bacteria,3Y38D@57723|Acidobacteria 57723|Acidobacteria U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently secY - - ko:K03076 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5 - - SecY DYD2_k127_766477_3 1266914.ATUK01000012_gene304 4.444e-53 199.0 COG0563@1|root,COG0563@2|Bacteria,1MXCZ@1224|Proteobacteria,1RMT6@1236|Gammaproteobacteria,1WX43@135613|Chromatiales 135613|Chromatiales F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism adk - 2.7.4.3 ko:K00939 ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130 M00049 R00127,R01547,R11319 RC00002 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ADK,ADK_lid DYD2_k127_766477_1 871963.Desdi_0457 2.066e-92 311.0 COG0024@1|root,COG0024@2|Bacteria,1TQC1@1239|Firmicutes,248I8@186801|Clostridia,260SK@186807|Peptococcaceae 186801|Clostridia E TIGRFAM methionine aminopeptidase, type I map - 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 DYD2_k127_766477_6 401053.AciPR4_3213 6.077e-32 125.0 COG0361@1|root,COG0361@2|Bacteria,3Y55Z@57723|Acidobacteria,2JJUQ@204432|Acidobacteriia 204432|Acidobacteriia J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex infA - - ko:K02518 - - - - ko00000,ko03012 - - - eIF-1a DYD2_k127_778567_1 443598.AUFA01000049_gene415 5.45e-39 155.0 COG2114@1|root,COG3899@1|root,COG2114@2|Bacteria,COG3899@2|Bacteria,1MUDT@1224|Proteobacteria,2TQVN@28211|Alphaproteobacteria,3JTQ7@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria T Adenylate and Guanylate cyclase catalytic domain - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - AAA_16,Abhydrolase_1,DZR,Guanylate_cyc,TPR_4 DYD2_k127_778567_0 1173028.ANKO01000064_gene3082 1.038e-300 966.0 COG1020@1|root,COG1020@2|Bacteria,1G0XE@1117|Cyanobacteria,1H837@1150|Oscillatoriales 1117|Cyanobacteria Q Non-ribosomal peptide synthetase modules and related - - - - - - - - - - - - AMP-binding,AMP-binding_C,Condensation,Formyl_trans_N,Methyltransf_12,PP-binding,PilZ DYD2_k127_784638_0 1244869.H261_02516 3.399e-191 615.0 COG0006@1|root,COG0006@2|Bacteria,1MUZS@1224|Proteobacteria,2TQXN@28211|Alphaproteobacteria,2JQSS@204441|Rhodospirillales 204441|Rhodospirillales E aminopeptidase pepP - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - Creatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C DYD2_k127_79048_4 479432.Sros_1614 7.536e-55 194.0 COG4312@1|root,COG4312@2|Bacteria,2H9QT@201174|Actinobacteria 201174|Actinobacteria S Bacterial protein of unknown function (DUF899) - - - - - - - - - - - - DUF899 DYD2_k127_79048_3 639030.JHVA01000001_gene3381 1.742e-69 246.0 2B33H@1|root,31VR5@2|Bacteria,3Y819@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_79048_5 33876.JNXY01000002_gene273 1.256e-34 142.0 COG1376@1|root,COG3409@1|root,COG1376@2|Bacteria,COG3409@2|Bacteria,2GXGF@201174|Actinobacteria,4DINJ@85008|Micromonosporales 201174|Actinobacteria M L,D-transpeptidase catalytic domain - - - - - - - - - - - - PG_binding_1,YkuD DYD2_k127_79048_1 102125.Xen7305DRAFT_00020850 3.306e-86 294.0 COG3823@1|root,COG3823@2|Bacteria,1GPV5@1117|Cyanobacteria,3VMFK@52604|Pleurocapsales 1117|Cyanobacteria O Glutamine cyclotransferase - - - - - - - - - - - - Glu_cyclase_2 DYD2_k127_79048_2 1499967.BAYZ01000105_gene3510 7.42e-76 280.0 COG1305@1|root,COG1305@2|Bacteria 2|Bacteria E Transglutaminase-like superfamily - - 2.3.2.13 ko:K22452 - - - - ko00000,ko01000 - - - DUF3488,DUF4129,Transglut_core DYD2_k127_79048_0 639030.JHVA01000001_gene3551 2.72e-122 406.0 COG0621@1|root,COG0621@2|Bacteria,3Y362@57723|Acidobacteria,2JIYW@204432|Acidobacteriia 204432|Acidobacteriia H Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,UPF0004 DYD2_k127_794256_1 1379698.RBG1_1C00001G0370 3.837e-121 411.0 COG0616@1|root,COG0616@2|Bacteria,2NNKU@2323|unclassified Bacteria 2|Bacteria OU Peptidase family S49 sppA - - ko:K04773 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S49 DYD2_k127_794256_0 240015.ACP_1647 2.484e-124 409.0 COG0482@1|root,COG0482@2|Bacteria,3Y2JX@57723|Acidobacteria,2JHKV@204432|Acidobacteriia 204432|Acidobacteriia J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 mnmA - 2.8.1.13 ko:K00566 ko04122,map04122 - R08700 RC02313,RC02315 ko00000,ko00001,ko01000,ko03016 - - - tRNA_Me_trans DYD2_k127_794256_2 1121405.dsmv_0655 4.365e-111 368.0 COG0714@1|root,COG0714@2|Bacteria,1MXIW@1224|Proteobacteria,42MX4@68525|delta/epsilon subdivisions,2WKVB@28221|Deltaproteobacteria,2MHKN@213118|Desulfobacterales 28221|Deltaproteobacteria S ATPase associated with various cellular activities AAA_5 - - - ko:K04748 - - R00294 RC02794 ko00000 3.D.4.10 - - AAA_5,CbbQ_C DYD2_k127_794256_4 1173023.KE650771_gene2966 1.493e-17 84.0 2EIH3@1|root,33C8F@2|Bacteria,1GAF2@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_794256_3 324602.Caur_2253 8.709e-49 180.0 COG3744@1|root,COG3744@2|Bacteria 2|Bacteria S ribonuclease activity - - - - - - - - - - - - PIN DYD2_k127_794256_5 1173026.Glo7428_4563 1.749e-05 48.0 2EPSQ@1|root,34AGY@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_795735_1 671143.DAMO_3123 1.474e-55 201.0 COG2204@1|root,COG2204@2|Bacteria,2NQHI@2323|unclassified Bacteria 2|Bacteria T Sigma-54 interaction domain - - - ko:K02481 - - - - ko00000,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_795735_0 379066.GAU_2015 6.056e-81 295.0 COG2202@1|root,COG4191@1|root,COG2202@2|Bacteria,COG4191@2|Bacteria,1ZTDZ@142182|Gemmatimonadetes 142182|Gemmatimonadetes T PAS domain - - - - - - - - - - - - HATPase_c,HisKA,PAS_4 DYD2_k127_802410_1 797209.ZOD2009_17383 4.981e-34 141.0 arCOG12117@1|root,arCOG12117@2157|Archaea,2XXVR@28890|Euryarchaeota,23WGQ@183963|Halobacteria 183963|Halobacteria S Protein of unknown function (DUF3891) - - - - - - - - - - - - DUF3891 DYD2_k127_802410_0 298654.FraEuI1c_4420 7.832e-44 170.0 COG1028@1|root,COG1028@2|Bacteria,2H1WT@201174|Actinobacteria 201174|Actinobacteria IQ NAD dependent epimerase/dehydratase family - - - - - - - - - - - - adh_short_C2 DYD2_k127_802410_2 1500259.JQLD01000002_gene3359 4.414e-23 105.0 COG1028@1|root,COG1028@2|Bacteria,1R3U8@1224|Proteobacteria,2U1SI@28211|Alphaproteobacteria,4BFI8@82115|Rhizobiaceae 28211|Alphaproteobacteria IQ KR domain - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD2_k127_802410_4 1121106.JQKB01000015_gene5829 4.525e-14 77.0 COG1028@1|root,COG1028@2|Bacteria,1MXVZ@1224|Proteobacteria,2TSQ4@28211|Alphaproteobacteria,2JQV8@204441|Rhodospirillales 204441|Rhodospirillales IQ KR domain - - - - - - - - - - - - adh_short_C2 DYD2_k127_802410_5 1122915.AUGY01000020_gene6479 1.082e-13 80.0 COG0715@1|root,COG0715@2|Bacteria 2|Bacteria P thiamine-containing compound biosynthetic process - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 DYD2_k127_802410_3 426368.MmarC7_1409 1.939e-20 97.0 COG4032@1|root,arCOG01613@2157|Archaea,2XYBY@28890|Euryarchaeota,23QS9@183939|Methanococci 183939|Methanococci S Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - GO:0003674,GO:0003824,GO:0006082,GO:0006732,GO:0006790,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019295,GO:0019296,GO:0044237,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0050545,GO:0051186,GO:0051188,GO:0071704,GO:1901576 4.1.1.79 ko:K06034 ko00680,ko01120,map00680,map01120 M00358 R05774 RC00506 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_N DYD2_k127_802410_6 1435356.Y013_22625 1.816e-06 53.0 COG0028@1|root,COG0028@2|Bacteria,2GMIJ@201174|Actinobacteria,4G4Z0@85025|Nocardiaceae 201174|Actinobacteria EH Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - - - - - - - - - - TPP_enzyme_C DYD2_k127_808047_3 373903.Hore_13020 6.57e-11 67.0 COG4223@1|root,COG4223@2|Bacteria,1VK8G@1239|Firmicutes,24VZD@186801|Clostridia 186801|Clostridia DZ transferase activity, transferring acyl groups other than amino-acyl groups - - - - - - - - - - - - - DYD2_k127_808047_2 675814.VIC_001987 5.364e-16 80.0 COG3311@1|root,COG3311@2|Bacteria,1NGB9@1224|Proteobacteria,1SGDV@1236|Gammaproteobacteria,1XZ0B@135623|Vibrionales 135623|Vibrionales K Transcriptional regulator - - - ko:K07733 - - - - ko00000,ko03000 - - - Phage_AlpA DYD2_k127_808047_1 330214.NIDE3307 4.442e-48 185.0 COG2813@1|root,COG2813@2|Bacteria 2|Bacteria J rRNA (guanine-N2-)-methyltransferase activity crtF GO:0003674,GO:0003824,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0030493,GO:0030494,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0036067,GO:0036069,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.210,2.1.1.304,2.1.1.333 ko:K09846,ko:K13604,ko:K21460 ko00860,ko00906,ko01100,ko01110,map00860,map00906,map01100,map01110 - R07521,R07524,R07527,R07529,R07533,R07535,R09063 RC00003,RC01662,RC02082 ko00000,ko00001,ko01000 - - - Dimerisation2,Methyltransf_2,Methyltransf_25 DYD2_k127_808047_0 247490.KSU1_D0465 2.493e-63 230.0 COG0438@1|root,COG0438@2|Bacteria,2IYQ9@203682|Planctomycetes 203682|Planctomycetes M Glycosyltransferase Family 4 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD2_k127_812043_2 1242864.D187_007970 8.268e-87 297.0 COG2124@1|root,COG2124@2|Bacteria,1MY5H@1224|Proteobacteria,438QG@68525|delta/epsilon subdivisions,2X3XV@28221|Deltaproteobacteria,2YXI6@29|Myxococcales 28221|Deltaproteobacteria C Cytochrome P450 - - - ko:K15468 - - - - ko00000,ko01008 - - - p450 DYD2_k127_812043_1 525897.Dbac_2296 6.893e-161 517.0 COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,42N97@68525|delta/epsilon subdivisions,2WKVE@28221|Deltaproteobacteria,2M7ZJ@213115|Desulfovibrionales 28221|Deltaproteobacteria S Transporter-associated region - - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,CorC_HlyC,DUF21 DYD2_k127_812043_3 1541065.JRFE01000014_gene1496 4.271e-80 275.0 COG2518@1|root,COG2518@2|Bacteria,1G5KC@1117|Cyanobacteria,3VKZF@52604|Pleurocapsales 1117|Cyanobacteria O Ribosomal RNA adenine dimethylase pcm GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 ko:K00573 - - - - ko00000,ko01000 - - - PCMT DYD2_k127_812043_0 1123368.AUIS01000024_gene954 1.166e-172 553.0 COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,1RY8P@1236|Gammaproteobacteria 1236|Gammaproteobacteria E amino acid frlA GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - ko:K03294,ko:K19540 - - - - ko00000,ko02000 2.A.3.2,2.A.3.8.17 - iAF1260.b3370,iB21_1397.B21_03173,iBWG_1329.BWG_3062,iEC042_1314.EC042_3632,iEC55989_1330.EC55989_3776,iECBD_1354.ECBD_0378,iECB_1328.ECB_03221,iECDH10B_1368.ECDH10B_3546,iECDH1ME8569_1439.ECDH1ME8569_3250,iECD_1391.ECD_03221,iECIAI1_1343.ECIAI1_3509,iECO111_1330.ECO111_4180,iECO26_1355.ECO26_4459,iETEC_1333.ETEC_3621,iEcDH1_1363.EcDH1_0342,iJO1366.b3370,iSSON_1240.SSON_3502,iUMNK88_1353.UMNK88_4136,iY75_1357.Y75_RS20365 AA_permease_2 DYD2_k127_812043_4 28072.Nos7524_4911 3.449e-47 171.0 COG2890@1|root,COG2890@2|Bacteria,1G51W@1117|Cyanobacteria,1HMWG@1161|Nostocales 1117|Cyanobacteria J Histone methylation protein DOT1 - - - - - - - - - - - - Methyltransf_31 DYD2_k127_813554_0 886293.Sinac_0988 5.539e-203 642.0 COG0531@1|root,COG0531@2|Bacteria,2IX7G@203682|Planctomycetes 203682|Planctomycetes E Amino acid permease - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 DYD2_k127_813554_2 203122.Sde_1602 4.805e-16 82.0 COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,1RP9W@1236|Gammaproteobacteria,464RD@72275|Alteromonadaceae 1236|Gammaproteobacteria K DJ-1/PfpI family - - - - - - - - - - - - DJ-1_PfpI,HTH_18 DYD2_k127_813554_1 1082933.MEA186_06086 4.491e-64 247.0 COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,1R20U@1224|Proteobacteria,2U3F2@28211|Alphaproteobacteria 28211|Alphaproteobacteria K Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_19,TPR_6 DYD2_k127_8181_2 1173264.KI913949_gene310 6.667e-31 124.0 2CIC7@1|root,32X5Y@2|Bacteria,1G8XZ@1117|Cyanobacteria,1HG09@1150|Oscillatoriales 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD2_k127_8181_0 1168059.KB899087_gene2573 4.489e-43 169.0 COG2141@1|root,COG2141@2|Bacteria,1MWDV@1224|Proteobacteria,2VA1E@28211|Alphaproteobacteria,3F0IR@335928|Xanthobacteraceae 28211|Alphaproteobacteria C Luciferase-like monooxygenase - - - - - - - - - - - - Bac_luciferase DYD2_k127_8181_3 203124.Tery_2073 1.888e-26 114.0 COG0662@1|root,COG0662@2|Bacteria,1GDUY@1117|Cyanobacteria 1117|Cyanobacteria G Cupin domain - - - - - - - - - - - - Cupin_2 DYD2_k127_8181_1 319003.Bra1253DRAFT_02360 2.289e-40 156.0 COG4948@1|root,COG4948@2|Bacteria,1MW5B@1224|Proteobacteria,2UNXP@28211|Alphaproteobacteria,3K6K3@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria M Mandelate racemase / muconate lactonizing enzyme, C-terminal domain gci - 5.5.1.27 ko:K18983 ko00053,map00053 - R10847 RC03287 ko00000,ko00001,ko01000 - - - MR_MLE_C,MR_MLE_N DYD2_k127_81973_1 234267.Acid_3348 8.816e-63 231.0 COG0624@1|root,COG0624@2|Bacteria,3Y2XS@57723|Acidobacteria 57723|Acidobacteria E PFAM Peptidase M20 - - - - - - - - - - - - M20_dimer,Peptidase_M20,Peptidase_M28 DYD2_k127_81973_4 33876.JNXY01000010_gene2559 7.162e-15 78.0 COG3227@1|root,COG3250@1|root,COG3227@2|Bacteria,COG3250@2|Bacteria,2IDQA@201174|Actinobacteria,4DBCS@85008|Micromonosporales 201174|Actinobacteria E Thermolysin metallopeptidase, catalytic domain - - - - - - - - - - - - FTP,Peptidase_M4,Peptidase_M4_C DYD2_k127_81973_0 1173022.Cri9333_0733 5.977e-88 296.0 COG0426@1|root,COG0426@2|Bacteria,1GC5X@1117|Cyanobacteria 1117|Cyanobacteria C domain, Protein - - - - - - - - - - - - - DYD2_k127_81973_2 1210884.HG799466_gene12878 9.322e-32 130.0 COG0642@1|root,COG2205@2|Bacteria,2J2BV@203682|Planctomycetes 203682|Planctomycetes T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA DYD2_k127_82110_0 563192.HMPREF0179_03372 4.496e-45 183.0 COG0471@1|root,COG0471@2|Bacteria,1MUSA@1224|Proteobacteria,42NGE@68525|delta/epsilon subdivisions,2WUC7@28221|Deltaproteobacteria,2MG8G@213115|Desulfovibrionales 28221|Deltaproteobacteria P Sodium:sulfate symporter transmembrane region - - - - - - - - - - - - Na_sulph_symp DYD2_k127_82110_1 313612.L8106_00720 1.678e-24 107.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G1QI@1117|Cyanobacteria,1H7BP@1150|Oscillatoriales 1117|Cyanobacteria NU TPR repeat - - - - - - - - - - - - CHAT,TPR_10,TPR_12,TPR_7,TPR_8 DYD2_k127_827730_3 247490.KSU1_D0504 4.179e-25 108.0 COG0683@1|root,COG2010@1|root,COG0683@2|Bacteria,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - - - - - - - - - - Cytochrom_C,Peripla_BP_6 DYD2_k127_827730_2 247490.KSU1_D0505 1.656e-58 211.0 COG1999@1|root,COG1999@2|Bacteria,2IZH2@203682|Planctomycetes 203682|Planctomycetes S SCO1/SenC - - - ko:K07152,ko:K08976 - - - - ko00000,ko03029 - - - DUF420,SCO1-SenC DYD2_k127_827730_0 247490.KSU1_D0506 1.008e-173 567.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - Cytochrom_D1 DYD2_k127_827730_1 234267.Acid_5786 2.841e-160 515.0 COG0265@1|root,COG0265@2|Bacteria,3Y2WB@57723|Acidobacteria 57723|Acidobacteria O PFAM peptidase S1 and S6, chymotrypsin Hap - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 DYD2_k127_833614_0 497965.Cyan7822_3560 3.374e-144 496.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G135@1117|Cyanobacteria,3KGI4@43988|Cyanothece 1117|Cyanobacteria N PFAM TPR repeat-containing protein - - - - - - - - - - - - CHAT,TPR_12,TPR_8 DYD2_k127_833614_1 1396418.BATQ01000030_gene5627 5.796e-09 68.0 COG2931@1|root,COG2931@2|Bacteria 2|Bacteria Q calcium- and calmodulin-responsive adenylate cyclase activity - - - - - - - - - - - - Big_5,Calx-beta,DUF4214,DUF4347,Peptidase_C11,SLH,SWM_repeat DYD2_k127_839962_1 1163617.SCD_n02945 1.506e-93 313.0 COG4796@1|root,COG4796@2|Bacteria,1QTT6@1224|Proteobacteria,2VHY4@28216|Betaproteobacteria 28216|Betaproteobacteria U type IV pilus secretin PilQ pilQ - - ko:K02666 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - AMIN,STN,Secretin,Secretin_N DYD2_k127_839962_2 1163617.SCD_n02946 3.119e-68 237.0 COG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,2VRDN@28216|Betaproteobacteria 28216|Betaproteobacteria F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate aroK - 2.7.1.71 ko:K00891 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - SKI DYD2_k127_839962_0 62928.azo3644 8.048e-147 472.0 COG0337@1|root,COG0337@2|Bacteria,1MUBK@1224|Proteobacteria,2VHXR@28216|Betaproteobacteria,2KURZ@206389|Rhodocyclales 206389|Rhodocyclales E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) aroB - 4.2.3.4 ko:K01735 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03083 RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase DYD2_k127_84583_0 264732.Moth_2295 5.898e-107 364.0 COG2078@1|root,COG3885@1|root,COG2078@2|Bacteria,COG3885@2|Bacteria,1TQH8@1239|Firmicutes,2491Q@186801|Clostridia,42EU7@68295|Thermoanaerobacterales 186801|Clostridia S Extradiol ring-cleavage dioxygenase, class III - - - ko:K06990,ko:K09141 - - - - ko00000,ko04812 - - - AMMECR1,LigB DYD2_k127_862227_0 1132855.KB913035_gene154 1.719e-56 199.0 29MCB@1|root,308A4@2|Bacteria,1RFTR@1224|Proteobacteria,2VVTW@28216|Betaproteobacteria,2KNSV@206350|Nitrosomonadales 206350|Nitrosomonadales S Putative lumazine-binding - - - - - - - - - - - - Lumazine_bd_2 DYD2_k127_862227_1 1232437.KL662011_gene1515 0.0002358 53.0 COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,42MFX@68525|delta/epsilon subdivisions,2WJ91@28221|Deltaproteobacteria,2MIXG@213118|Desulfobacterales 28221|Deltaproteobacteria L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C DYD2_k127_86489_5 1121468.AUBR01000031_gene1279 3.521e-32 129.0 COG0438@1|root,COG0438@2|Bacteria,1UASH@1239|Firmicutes,248VW@186801|Clostridia,42GN4@68295|Thermoanaerobacterales 186801|Clostridia M PFAM Glycosyl transferase, group 1 - - 2.4.1.349 ko:K12994 - - - - ko00000,ko01000,ko01003,ko01005 - GT4 - Glyco_transf_4,Glycos_transf_1 DYD2_k127_86489_7 211165.AJLN01000116_gene2992 7.704e-22 111.0 COG0500@1|root,COG2226@2|Bacteria,1G96Z@1117|Cyanobacteria 1117|Cyanobacteria Q Methyltransferase domain - - - - - - - - - - - - - DYD2_k127_86489_8 1415779.JOMH01000001_gene124 4.287e-10 73.0 COG1807@1|root,COG1807@2|Bacteria 2|Bacteria M 4-amino-4-deoxy-L-arabinose transferase activity - - - - - - - - - - - - Glyco_transf_22,PMT,PMT_2 DYD2_k127_86489_1 234267.Acid_4359 1.789e-77 265.0 COG0463@1|root,COG0463@2|Bacteria 2|Bacteria M Glycosyl transferase, family 2 dpm1 - 2.4.1.83 ko:K00721 ko00510,ko01100,map00510,map01100 - R01009 RC00005 ko00000,ko00001,ko01000,ko01003 - GT2 - Glycos_transf_2 DYD2_k127_86489_4 234267.Acid_1421 6.797e-50 199.0 COG1807@1|root,COG1807@2|Bacteria,3Y2T0@57723|Acidobacteria 2|Bacteria M PFAM glycosyl transferase family 39 - - - ko:K14340 - - - - ko00000,ko01000,ko01003 - - - PMT_2 DYD2_k127_86489_0 1174528.JH992898_gene3099 2.36e-80 301.0 COG4485@1|root,COG4485@2|Bacteria,1GGV1@1117|Cyanobacteria 1117|Cyanobacteria S Bacterial membrane protein, YfhO - - - - - - - - - - - - - DYD2_k127_86489_9 667015.Bacsa_1944 5.494e-05 51.0 COG1569@1|root,COG1569@2|Bacteria,4NSFI@976|Bacteroidetes,2FSDV@200643|Bacteroidia,4AQMM@815|Bacteroidaceae 976|Bacteroidetes S Toxin-antitoxin system, toxin component, PIN family - - - - - - - - - - - - PIN_3 DYD2_k127_86489_6 1229780.BN381_130153 9.208e-23 115.0 COG0500@1|root,COG2226@2|Bacteria,2IEI0@201174|Actinobacteria 201174|Actinobacteria Q Methyltransferase domain - - - - - - - - - - - - DUF4214,Methyltransf_11 DYD2_k127_86489_3 1122919.KB905549_gene2050 1.178e-50 205.0 COG0438@1|root,COG0438@2|Bacteria,1UASH@1239|Firmicutes,4HKSK@91061|Bacilli,26YUS@186822|Paenibacillaceae 91061|Bacilli M Glycosyl transferases group 1 - - - - - - - - - - - - DUF4214,Glyco_transf_4,Glycos_transf_1 DYD2_k127_865850_2 234267.Acid_3885 8.879e-50 179.0 COG1245@1|root,COG1245@2|Bacteria 2|Bacteria C 4Fe-4S binding domain rnfB - 1.8.99.2 ko:K00395,ko:K02572,ko:K03616 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00596 R00860,R04927,R08553 RC00007,RC01239,RC02862 ko00000,ko00001,ko00002,ko01000 - - - FeS,Fer4,Fer4_4,Fer4_7 DYD2_k127_865850_0 251221.35213042 7.816e-166 539.0 COG2866@1|root,COG2866@2|Bacteria 2|Bacteria E metallocarboxypeptidase activity - - - - - - - - - - - - Peptidase_M14 DYD2_k127_885959_1 1254432.SCE1572_13105 5.417e-85 291.0 COG2308@1|root,COG2308@2|Bacteria,1P9A0@1224|Proteobacteria,42PIM@68525|delta/epsilon subdivisions,2WKI0@28221|Deltaproteobacteria,2Z1SA@29|Myxococcales 28221|Deltaproteobacteria S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - - DYD2_k127_885959_3 234267.Acid_1335 3.218e-32 134.0 COG2315@1|root,COG2315@2|Bacteria,3Y5I0@57723|Acidobacteria 57723|Acidobacteria S YjbR - - - - - - - - - - - - YjbR DYD2_k127_885959_5 237368.SCABRO_01849 2.774e-06 52.0 COG3668@1|root,COG3668@2|Bacteria,2J1H4@203682|Planctomycetes 203682|Planctomycetes S ParE toxin of type II toxin-antitoxin system, parDE - - - - - - - - - - - - ParE_toxin DYD2_k127_885959_0 1303518.CCALI_00772 2.473e-137 445.0 COG0473@1|root,COG0473@2|Bacteria 2|Bacteria CE 3-isopropylmalate dehydrogenase activity icd - 1.1.1.41 ko:K00030 ko00020,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010 R00709 RC00114 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh DYD2_k127_885959_2 1042163.BRLA_c006640 5.926e-77 272.0 COG0665@1|root,COG0665@2|Bacteria,1VTRW@1239|Firmicutes,4HD2K@91061|Bacilli,26T5Z@186822|Paenibacillaceae 91061|Bacilli E Glycine oxidase thiO GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19 ko:K03153 ko00730,ko01100,map00730,map01100 - R07463 RC01788 ko00000,ko00001,ko01000 - - - DAO DYD2_k127_885959_4 1254432.SCE1572_15525 3.109e-21 108.0 COG0265@1|root,COG0526@1|root,COG0265@2|Bacteria,COG0526@2|Bacteria,1QAS6@1224|Proteobacteria,4359M@68525|delta/epsilon subdivisions,2WZKT@28221|Deltaproteobacteria,2Z2BZ@29|Myxococcales 28221|Deltaproteobacteria O Domain present in PSD-95, Dlg, and ZO-1/2. - - - - - - - - - - - - AhpC-TSA,PDZ_2 DYD2_k127_895753_0 861299.J421_2157 3.735e-106 373.0 COG3629@1|root,COG3899@1|root,COG3629@2|Bacteria,COG3899@2|Bacteria,1ZUXK@142182|Gemmatimonadetes 2|Bacteria T AAA ATPase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - AAA_16,BTAD,TPR_12,Trans_reg_C DYD2_k127_903933_2 1173020.Cha6605_2960 6.097e-06 50.0 COG0454@1|root,COG0456@2|Bacteria 2|Bacteria K acetyltransferase - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_10 DYD2_k127_903933_0 886293.Sinac_4730 0.0 1337.0 COG0793@1|root,COG4946@1|root,COG0793@2|Bacteria,COG4946@2|Bacteria,2IX33@203682|Planctomycetes 203682|Planctomycetes M Tricorn protease C1 domain - - - ko:K08676 - - - - ko00000,ko01000,ko01002 - - - PD40,Peptidase_S41,Tricorn_C1,Tricorn_PDZ DYD2_k127_903933_1 234267.Acid_1287 5.001e-13 74.0 COG0810@1|root,COG0810@2|Bacteria,3Y5QN@57723|Acidobacteria 57723|Acidobacteria M TIGRFAM TonB family protein - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C DYD2_k127_907783_0 1267535.KB906767_gene2552 2.566e-226 742.0 COG0793@1|root,COG4946@1|root,COG0793@2|Bacteria,COG4946@2|Bacteria,3Y3BP@57723|Acidobacteria,2JMMF@204432|Acidobacteriia 204432|Acidobacteriia M Tricorn protease PDZ domain - - - ko:K08676 - - - - ko00000,ko01000,ko01002 - - - PD40,Peptidase_S41,Tricorn_C1,Tricorn_PDZ DYD2_k127_925887_1 1123242.JH636434_gene5202 1.405e-53 190.0 COG1943@1|root,COG1943@2|Bacteria,2IYXS@203682|Planctomycetes 203682|Planctomycetes L Transposase IS200 like - - - - - - - - - - - - Y1_Tnp DYD2_k127_925887_3 1123242.JH636434_gene5202 1.014e-23 103.0 COG1943@1|root,COG1943@2|Bacteria,2IYXS@203682|Planctomycetes 203682|Planctomycetes L Transposase IS200 like - - - - - - - - - - - - Y1_Tnp DYD2_k127_925887_0 420324.KI911961_gene1644 5.307e-99 329.0 COG2114@1|root,COG2114@2|Bacteria,1N6I7@1224|Proteobacteria,2U3M0@28211|Alphaproteobacteria 28211|Alphaproteobacteria T Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - DUF4242,Guanylate_cyc DYD2_k127_925887_4 195253.Syn6312_1966 2.556e-06 55.0 COG1487@1|root,COG1487@2|Bacteria 195253.Syn6312_1966|- S nuclease activity - - - - - - - - - - - - - DYD2_k127_925887_2 330214.NIDE1372 3.399e-26 110.0 COG2026@1|root,COG2026@2|Bacteria 2|Bacteria DJ nuclease activity relE GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0006139,GO:0006355,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0034641,GO:0034655,GO:0040008,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - ko:K06218 - - - - ko00000,ko02048 - - - ParE_toxin DYD2_k127_927898_1 414684.RC1_4003 3.601e-90 313.0 COG5338@1|root,COG5338@2|Bacteria,1PFWT@1224|Proteobacteria,2U090@28211|Alphaproteobacteria,2JQS1@204441|Rhodospirillales 204441|Rhodospirillales M Putative beta-barrel porin 2 - - - - - - - - - - - - BBP2_2 DYD2_k127_927898_2 1122137.AQXF01000004_gene1647 7.148e-46 173.0 COG1596@1|root,COG1596@2|Bacteria,1MXYS@1224|Proteobacteria,2U93S@28211|Alphaproteobacteria 28211|Alphaproteobacteria M polysaccharide export - - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB DYD2_k127_927898_0 570952.ATVH01000019_gene868 2.048e-133 434.0 COG3039@1|root,COG3039@2|Bacteria,1MVTU@1224|Proteobacteria,2TVIR@28211|Alphaproteobacteria,2JUSM@204441|Rhodospirillales 204441|Rhodospirillales L hmm pf01609 - - - - - - - - - - - - DDE_Tnp_1,DUF772 DYD2_k127_927898_4 189753.AXAS01000028_gene8098 2.109e-21 96.0 COG3039@1|root,COG3039@2|Bacteria,1MVTU@1224|Proteobacteria,2TVIR@28211|Alphaproteobacteria,3JT6Q@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L hmm pf01609 - - - ko:K07481 - - - - ko00000 - - - DUF772 DYD2_k127_927898_5 1126627.BAWE01000006_gene6619 4.89e-08 56.0 COG3039@1|root,COG3039@2|Bacteria,1MVTU@1224|Proteobacteria,2TVIR@28211|Alphaproteobacteria,3JT6Q@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L hmm pf01609 - - - ko:K07481 - - - - ko00000 - - - DDE_Tnp_1_6,DUF772 DYD2_k127_927898_7 1121022.ABENE_00915 0.0003371 47.0 COG3547@1|root,COG3547@2|Bacteria,1MUER@1224|Proteobacteria,2TSGZ@28211|Alphaproteobacteria 28211|Alphaproteobacteria L Transposase (IS116 IS110 IS902 family) - - - - - - - - - - - - DEDD_Tnp_IS110,Transposase_20 DYD2_k127_927898_3 472759.Nhal_1626 8.752e-28 126.0 COG1216@1|root,COG1216@2|Bacteria,1N5RX@1224|Proteobacteria,1SH90@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Uncharacterised nucleotidyltransferase - - - - - - - - - - - - NTP_transf_5 DYD2_k127_927920_0 1242864.D187_003111 1.102e-129 439.0 COG1672@1|root,COG1672@2|Bacteria,1PIY1@1224|Proteobacteria,433X5@68525|delta/epsilon subdivisions,2X3YJ@28221|Deltaproteobacteria,2YXMA@29|Myxococcales 28221|Deltaproteobacteria S AAA ATPase domain - - - - - - - - - - - - AAA_16 DYD2_k127_927920_1 1242864.D187_003112 2.676e-13 81.0 2DCXA@1|root,2ZFPI@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD2_k127_932984_2 1430440.MGMSRv2_1827 8.727e-25 108.0 COG0642@1|root,COG2205@2|Bacteria,1MUZQ@1224|Proteobacteria,2TSS7@28211|Alphaproteobacteria,2JPB0@204441|Rhodospirillales 204441|Rhodospirillales T Histidine kinase kdpD - 2.7.13.3 ko:K07646 ko02020,map02020 M00454 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DUF4118,GAF_3,HATPase_c,HisKA,KdpD,Usp DYD2_k127_932984_0 204669.Acid345_0509 9.596e-90 301.0 COG0745@1|root,COG0745@2|Bacteria,3Y4R4@57723|Acidobacteria,2JJBD@204432|Acidobacteriia 204432|Acidobacteriia T response regulator, receiver - - - ko:K07667 ko02020,ko02024,map02020,map02024 M00454 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C DYD2_k127_932984_1 240015.ACP_1229 2.181e-76 261.0 COG1249@1|root,COG1249@2|Bacteria 2|Bacteria C cell redox homeostasis gshR - 1.8.1.7 ko:K00383 ko00480,ko04918,map00480,map04918 - R00094,R00115 RC00011 ko00000,ko00001,ko01000 - - - Pyr_redox_2,Pyr_redox_dim DYD2_k127_933528_1 1331060.RLDS_11615 3.901e-43 163.0 COG1993@1|root,COG1993@2|Bacteria,1N0EM@1224|Proteobacteria,2U9WX@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Uncharacterized ACR, COG1993 - - - ko:K09137 - - - - ko00000 - - - DUF190 DYD2_k127_933528_3 472759.Nhal_2424 2.108e-30 124.0 COG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,1S8RQ@1236|Gammaproteobacteria,1WZ4Z@135613|Chromatiales 135613|Chromatiales D Important for reducing fluoride concentration in the cell, thus reducing its toxicity crcB - - ko:K06199 - - - - ko00000,ko02000 1.A.43.1,1.A.43.2,1.A.43.3 - - CRCB DYD2_k127_933528_2 682795.AciX8_3158 1.099e-38 148.0 COG0507@1|root,COG0507@2|Bacteria,3Y6NM@57723|Acidobacteria,2JKN1@204432|Acidobacteriia 204432|Acidobacteriia L TrwC relaxase - - - - - - - - - - - - AAA_30,TrwC,UvrD_C_2 DYD2_k127_933528_8 1550073.JROH01000035_gene2627 0.0008582 48.0 COG0507@1|root,COG0507@2|Bacteria,1MUTR@1224|Proteobacteria,2U1IW@28211|Alphaproteobacteria,2K0T3@204457|Sphingomonadales 204457|Sphingomonadales L TrwC protein - - - - - - - - - - - - AAA_30,TrwC,Viral_helicase1 DYD2_k127_933528_5 240015.ACP_3239 0.0001746 44.0 COG0507@1|root,COG0507@2|Bacteria,3Y3FY@57723|Acidobacteria,2JIUR@204432|Acidobacteriia 57723|Acidobacteria L Conjugative relaxase domain protein - - - - - - - - - - - - AAA_30,TrwC,UvrD_C_2 DYD2_k127_933528_6 760142.Hipma_0695 0.0002898 49.0 COG0582@1|root,COG0582@2|Bacteria,1N45B@1224|Proteobacteria,42QTV@68525|delta/epsilon subdivisions,2X6YC@28221|Deltaproteobacteria,2M79W@213113|Desulfurellales 28221|Deltaproteobacteria L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_int_SAM_3,Phage_int_SAM_5,Phage_integrase DYD2_k127_933528_4 1123376.AUIU01000003_gene1639 1.114e-29 127.0 COG4974@1|root,COG4974@2|Bacteria,3J1FQ@40117|Nitrospirae 40117|Nitrospirae L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_integrase DYD2_k127_933528_7 526222.Desal_1647 0.0002916 46.0 COG4974@1|root,COG4974@2|Bacteria,1RBMG@1224|Proteobacteria,42R21@68525|delta/epsilon subdivisions,2WN4K@28221|Deltaproteobacteria,2M90A@213115|Desulfovibrionales 28221|Deltaproteobacteria L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_integrase DYD2_k127_933528_0 1120972.AUMH01000011_gene227 1.539e-148 485.0 COG1206@1|root,COG1206@2|Bacteria,1TP67@1239|Firmicutes,4HB27@91061|Bacilli,277XV@186823|Alicyclobacillaceae 91061|Bacilli J Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs trmFO GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 ko:K04094 - - - - ko00000,ko01000,ko03016,ko03036 - - - GIDA DYD2_k127_934033_0 1382359.JIAL01000001_gene1956 3.801e-129 417.0 COG0022@1|root,COG1071@1|root,COG0022@2|Bacteria,COG1071@2|Bacteria,3Y34Y@57723|Acidobacteria,2JHQ9@204432|Acidobacteriia 204432|Acidobacteriia C Dehydrogenase E1 component - - 1.2.4.4 ko:K11381 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C DYD2_k127_934033_1 240015.ACP_3156 1.066e-13 70.0 COG0022@1|root,COG1071@1|root,COG0022@2|Bacteria,COG1071@2|Bacteria,3Y34Y@57723|Acidobacteria,2JHQ9@204432|Acidobacteriia 204432|Acidobacteriia C Dehydrogenase E1 component - - 1.2.4.4 ko:K11381 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C DYD2_k127_937605_7 1121106.JQKB01000018_gene4928 9.384e-05 47.0 COG1319@1|root,COG1319@2|Bacteria,1RCRH@1224|Proteobacteria,2TU08@28211|Alphaproteobacteria,2JR4W@204441|Rhodospirillales 204441|Rhodospirillales C CO dehydrogenase flavoprotein C-terminal domain - - - - - - - - - - - - CO_deh_flav_C,FAD_binding_5 DYD2_k127_937605_4 767817.Desgi_0278 7.332e-33 135.0 COG1418@1|root,COG2068@1|root,COG1418@2|Bacteria,COG2068@2|Bacteria,1UY6E@1239|Firmicutes,249PV@186801|Clostridia,260Y2@186807|Peptococcaceae 186801|Clostridia S PFAM HD domain - - - - - - - - - - - - HD,NTP_transf_3 DYD2_k127_937605_6 1227739.Hsw_2300 1.954e-08 64.0 COG0526@1|root,COG0526@2|Bacteria,4NEX3@976|Bacteroidetes,47JZP@768503|Cytophagia 976|Bacteroidetes O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen ccmG - - - - - - - - - - - AhpC-TSA,DUF4369 DYD2_k127_937605_3 246200.SPOA0400 2.051e-36 141.0 COG0251@1|root,COG0251@2|Bacteria,1RHSP@1224|Proteobacteria,2U9A9@28211|Alphaproteobacteria,4NCHI@97050|Ruegeria 28211|Alphaproteobacteria J Endoribonuclease L-PSP - - 3.5.99.10 ko:K09022 - - R11098,R11099 RC03275,RC03354 ko00000,ko01000 - - - Ribonuc_L-PSP DYD2_k127_937605_1 485913.Krac_2147 3.309e-87 295.0 COG1024@1|root,COG1024@2|Bacteria,2G6G6@200795|Chloroflexi 2|Bacteria I PFAM Enoyl-CoA hydratase isomerase MA20_38145 - - - - - - - - - - - ECH_1 DYD2_k127_937605_0 331869.BAL199_27456 1.654e-104 352.0 COG1960@1|root,COG1960@2|Bacteria,1MVQH@1224|Proteobacteria,2TTX8@28211|Alphaproteobacteria,4BRV3@82117|unclassified Alphaproteobacteria 28211|Alphaproteobacteria C Acyl-CoA dehydrogenase, C-terminal domain - - 1.3.8.7 ko:K00249 ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320 M00013,M00036,M00087 R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754 RC00052,RC00068,RC00076,RC00095,RC00148,RC00246 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD2_k127_937605_2 365046.Rta_18140 4.416e-41 156.0 COG0654@1|root,COG1902@1|root,COG0654@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2VHDY@28216|Betaproteobacteria,4ACF4@80864|Comamonadaceae 28216|Betaproteobacteria CH PFAM NADH flavin oxidoreductase NADH oxidase abmA - 1.14.13.40,1.3.1.34 ko:K00219,ko:K09461 ko00627,ko01120,map00627,map01120 - R03998,R03999 RC00244 ko00000,ko00001,ko01000 - - - FAD_binding_3,Oxidored_FMN DYD2_k127_94034_8 36080.S2K9J2 5.975e-27 117.0 COG0790@1|root,KOG1550@2759|Eukaryota,39WUS@33154|Opisthokonta,3P062@4751|Fungi,1GVCY@112252|Fungi incertae sedis 4751|Fungi MOT Mortierella verticillata NRRL 6337 - - - - - - - - - - - - Sel1 DYD2_k127_94034_9 234267.Acid_4745 1.078e-05 58.0 COG3307@1|root,COG3307@2|Bacteria 2|Bacteria M -O-antigen - - - - - - - - - - - - Beta_helix,Wzy_C DYD2_k127_94034_2 204669.Acid345_4380 4.29e-55 218.0 COG0457@1|root,COG2956@1|root,COG0457@2|Bacteria,COG2956@2|Bacteria,3Y89N@57723|Acidobacteria 57723|Acidobacteria G Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_19,TPR_8 DYD2_k127_94034_10 204669.Acid345_4379 0.0001579 50.0 2DTVW@1|root,33MW2@2|Bacteria,3Y606@57723|Acidobacteria 57723|Acidobacteria - - - - - - - - - - - - - - - DYD2_k127_94034_7 671143.DAMO_2564 1.897e-34 141.0 COG0352@1|root,COG0352@2|Bacteria,2NPCU@2323|unclassified Bacteria 2|Bacteria H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) thiE GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 ko:K00788 ko00730,ko01100,map00730,map01100 M00127 R03223,R10712 RC00224,RC03255,RC03397 ko00000,ko00001,ko00002,ko01000 - - - TMP-TENI DYD2_k127_94034_1 1521187.JPIM01000001_gene846 1.196e-56 208.0 COG0351@1|root,COG0351@2|Bacteria,2G5R7@200795|Chloroflexi,375EX@32061|Chloroflexia 32061|Chloroflexia H PFAM Phosphomethylpyrimidine kinase type-1 - - 2.7.1.49,2.7.4.7 ko:K00941 ko00730,ko01100,map00730,map01100 M00127 R03471,R04509 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Phos_pyr_kin DYD2_k127_94034_3 321332.CYB_1473 3.494e-51 185.0 COG0652@1|root,COG0652@2|Bacteria,1G5BD@1117|Cyanobacteria,1H0AB@1129|Synechococcus 1117|Cyanobacteria O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides rot - 5.2.1.8 ko:K01802,ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase DYD2_k127_94034_5 485916.Dtox_3945 2.602e-37 154.0 COG0561@1|root,COG0561@2|Bacteria,1TREF@1239|Firmicutes,24PNN@186801|Clostridia,2673P@186807|Peptococcaceae 186801|Clostridia S HAD-superfamily hydrolase, subfamily IIB yidA - - - - - - - - - - - Hydrolase_3 DYD2_k127_94034_6 84531.JMTZ01000038_gene3588 1.082e-36 149.0 2EFPP@1|root,339FP@2|Bacteria,1NA60@1224|Proteobacteria,1SH3I@1236|Gammaproteobacteria 1236|Gammaproteobacteria S CHRD domain - - - - - - - - - - - - CHRD DYD2_k127_94034_0 994479.GL877880_gene3721 5.162e-146 472.0 COG0498@1|root,COG0498@2|Bacteria,2GNZD@201174|Actinobacteria,4DZGT@85010|Pseudonocardiales 201174|Actinobacteria E Pyridoxal-phosphate dependent enzyme - - 4.2.3.1 ko:K01733 ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230 M00018 R01466,R05086 RC00017,RC00526 ko00000,ko00001,ko00002,ko01000 - - - PALP DYD2_k127_94034_4 1267533.KB906736_gene870 4.574e-38 157.0 COG0457@1|root,COG0457@2|Bacteria,3Y3JH@57723|Acidobacteria,2JI8K@204432|Acidobacteriia 204432|Acidobacteriia S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16 DYD2_k127_958248_3 1095769.CAHF01000008_gene3642 8.47e-17 84.0 COG4244@1|root,COG4244@2|Bacteria,1NJGN@1224|Proteobacteria,2VYSI@28216|Betaproteobacteria 28216|Betaproteobacteria S Predicted membrane protein (DUF2231) - - - - - - - - - - - - DUF2231 DYD2_k127_958248_1 1122182.KB903833_gene5397 7.431e-91 312.0 COG0205@1|root,COG0205@2|Bacteria,2GK6W@201174|Actinobacteria,4DA29@85008|Micromonosporales 201174|Actinobacteria G Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions pfp - 2.7.1.11,2.7.1.90 ko:K21071 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130 - R00756,R00764,R02073,R03236,R04779 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PFK DYD2_k127_958248_0 411471.SUBVAR_04967 9.535e-105 352.0 COG0136@1|root,COG0136@2|Bacteria,1TPC6@1239|Firmicutes,248ZR@186801|Clostridia,3WGVU@541000|Ruminococcaceae 186801|Clostridia E Belongs to the aspartate-semialdehyde dehydrogenase family asd - 1.2.1.11 ko:K00133 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R02291 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC DYD2_k127_958248_2 1267535.KB906767_gene2308 5.099e-55 196.0 COG2318@1|root,COG2318@2|Bacteria,3Y4AI@57723|Acidobacteria,2JKRK@204432|Acidobacteriia 204432|Acidobacteriia S Protein of unknown function (DUF1572) - - - - - - - - - - - - DUF1572 DYD2_k127_965603_2 794846.AJQU01000057_gene293 5.17e-11 64.0 COG1653@1|root,COG1653@2|Bacteria,1MUNZ@1224|Proteobacteria,2U2Z9@28211|Alphaproteobacteria,4BCTU@82115|Rhizobiaceae 28211|Alphaproteobacteria G Bacterial extracellular solute-binding protein - - - ko:K02027 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - SBP_bac_1 DYD2_k127_965603_0 1499967.BAYZ01000009_gene5384 1.058e-80 278.0 COG1175@1|root,COG1175@2|Bacteria 2|Bacteria P transmembrane transport - - - ko:K02025,ko:K15771 ko02010,map02010 M00207,M00491 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1,3.A.1.1.16,3.A.1.1.2 - - BPD_transp_1 DYD2_k127_965603_1 1499967.BAYZ01000009_gene5385 1.383e-63 224.0 COG0395@1|root,COG0395@2|Bacteria 2|Bacteria P glycerophosphodiester transmembrane transport - - - ko:K02026 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - BPD_transp_1 DYD2_k127_96705_2 237368.SCABRO_02473 9.67e-11 65.0 COG1131@1|root,COG1131@2|Bacteria 2|Bacteria V ATPase activity - - - ko:K01990,ko:K09384 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - AAA_15,AAA_21,ABC_tran DYD2_k127_96705_0 518766.Rmar_1779 1.857e-55 211.0 COG1538@1|root,COG1538@2|Bacteria,4NDZ6@976|Bacteroidetes 976|Bacteroidetes MU Outer membrane efflux protein - - - - - - - - - - - - OEP DYD2_k127_96705_1 1120985.AUMI01000015_gene1578 1.564e-38 146.0 COG1131@1|root,COG1131@2|Bacteria,1TQKM@1239|Firmicutes,4H3CG@909932|Negativicutes 909932|Negativicutes V ABC transporter - - - - - - - - - - - - ABC_tran DYD2_k127_973525_0 1267533.KB906738_gene2048 1.269e-80 289.0 COG4964@1|root,COG4964@2|Bacteria,3Y3DF@57723|Acidobacteria,2JHJ6@204432|Acidobacteriia 204432|Acidobacteriia U Belongs to the GSP D family - - - ko:K02280 - - - - ko00000,ko02035,ko02044 - - - BON,Secretin,T2SS-T3SS_pil_N DYD2_k127_973525_1 296591.Bpro_2551 2.11e-10 71.0 COG4961@1|root,COG4961@2|Bacteria,1R58C@1224|Proteobacteria,2VJAX@28216|Betaproteobacteria,4AJWH@80864|Comamonadaceae 28216|Betaproteobacteria U Putative Flp pilus-assembly TadE/G-like - - - - - - - - - - - - Tad DYD2_k127_973733_1 1267535.KB906767_gene1386 3.62e-57 214.0 COG4965@1|root,COG4965@2|Bacteria,3Y4RR@57723|Acidobacteria,2JJ91@204432|Acidobacteriia 204432|Acidobacteriia U Type II secretion system - - - ko:K12510 - - - - ko00000,ko02044 - - - T2SSF DYD2_k127_973733_0 443143.GM18_2435 7.674e-175 558.0 COG4962@1|root,COG4962@2|Bacteria,1R7EN@1224|Proteobacteria,42NAK@68525|delta/epsilon subdivisions,2WIYX@28221|Deltaproteobacteria,43SA4@69541|Desulfuromonadales 28221|Deltaproteobacteria U PFAM type II secretion system protein E - - - ko:K02283,ko:K03609 - - - - ko00000,ko02035,ko02044,ko03036,ko04812 - - - CbiA,FHA,T2SSE DYD2_k127_974227_0 63737.Npun_R3591 1.283e-70 262.0 COG0642@1|root,COG0784@1|root,COG2461@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,COG2461@2|Bacteria,1G09B@1117|Cyanobacteria,1HMTJ@1161|Nostocales 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - CHASE,DUF4118,GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg DYD2_k127_974227_3 381666.H16_A2136 7.489e-38 162.0 COG3447@1|root,COG4585@1|root,COG3447@2|Bacteria,COG4585@2|Bacteria,1N0Y7@1224|Proteobacteria,2VP6G@28216|Betaproteobacteria,1K67U@119060|Burkholderiaceae 28216|Betaproteobacteria T MASE1 - - - - - - - - - - - - HATPase_c,HisKA_3,MASE1 DYD2_k127_974227_2 1174528.JH992898_gene2795 6.128e-51 191.0 COG0664@1|root,COG0664@2|Bacteria,1G1UQ@1117|Cyanobacteria,1JIKW@1189|Stigonemataceae 1117|Cyanobacteria T Cyclic nucleotide-monophosphate binding domain - - - - - - - - - - - - HTH_Crp_2,cNMP_binding DYD2_k127_974227_4 765420.OSCT_2221 1.882e-25 112.0 COG0642@1|root,COG0642@2|Bacteria 2|Bacteria T Histidine kinase - - - - - - - - - - - - CHASE,GAF,GAF_2,HATPase_c,HisKA,Hpt,PAS_4,PAS_8,PAS_9,Response_reg DYD2_k127_974227_1 1123508.JH636456_gene135 6.627e-63 224.0 COG2197@1|root,COG2197@2|Bacteria,2IZND@203682|Planctomycetes 203682|Planctomycetes K COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD2_k127_974227_5 324602.Caur_0021 2.177e-09 59.0 COG4585@1|root,COG5000@1|root,COG4585@2|Bacteria,COG5000@2|Bacteria,2G6F0@200795|Chloroflexi,377HR@32061|Chloroflexia 32061|Chloroflexia T histidine kinase dimerisation and phosphoacceptor region - - - - - - - - - - - - HAMP,HATPase_c,HisKA_3,sCache_3_2 DYD2_k127_974417_1 1267535.KB906767_gene5099 7.196e-110 372.0 COG3568@1|root,COG3568@2|Bacteria 2|Bacteria N Endonuclease Exonuclease Phosphatase - - - - - - - - - - - - Exo_endo_phos DYD2_k127_974417_7 330214.NIDE1420 5.777e-20 102.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - DUF5128,NHL,PA14 DYD2_k127_974417_0 234267.Acid_1867 5.875e-156 503.0 COG0665@1|root,COG0665@2|Bacteria,3Y5BS@57723|Acidobacteria 57723|Acidobacteria E FAD dependent oxidoreductase - - 1.5.3.1 ko:K00303,ko:K21061 ko00260,ko00330,ko01100,map00260,map00330,map01100 - R00610,R11428 RC00060,RC00135,RC00557 ko00000,ko00001,ko01000 - - - DAO DYD2_k127_974417_3 1254432.SCE1572_16555 3.906e-51 189.0 COG3571@1|root,COG3571@2|Bacteria,1RD20@1224|Proteobacteria,42SGK@68525|delta/epsilon subdivisions,2WPDI@28221|Deltaproteobacteria,2YVW1@29|Myxococcales 28221|Deltaproteobacteria S Alpha/beta hydrolase family - - - ko:K07020 - - - - ko00000 - - - Abhydrolase_4,Abhydrolase_5,DLH DYD2_k127_974417_5 1123508.JH636440_gene2923 1.919e-25 111.0 COG0388@1|root,COG0388@2|Bacteria,2J2IE@203682|Planctomycetes 203682|Planctomycetes S Carbon-nitrogen hydrolase - - - - - - - - - - - - CN_hydrolase DYD2_k127_974417_4 1177179.A11A3_00715 1.667e-44 163.0 COG1359@1|root,COG1359@2|Bacteria,1N1AN@1224|Proteobacteria,1S750@1236|Gammaproteobacteria 1236|Gammaproteobacteria S (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - - - - - - - - - - - DYD2_k127_974417_2 391612.CY0110_12012 2.812e-70 249.0 COG2367@1|root,COG2367@2|Bacteria,1G0DG@1117|Cyanobacteria,3KFP8@43988|Cyanothece 1117|Cyanobacteria V Beta-lactamase enzyme family - - - - - - - - - - - - Beta-lactamase2 DYD2_k127_974417_8 1198114.AciX9_3619 8.905e-11 68.0 COG0848@1|root,COG0848@2|Bacteria,3Y5AP@57723|Acidobacteria,2JJQV@204432|Acidobacteriia 204432|Acidobacteriia U PFAM Biopolymer transport protein ExbD TolR - - - ko:K03559,ko:K03560 - - - - ko00000,ko02000 1.A.30.2.1,1.A.30.2.2 - - ExbD DYD2_k127_974417_6 237368.SCABRO_02318 3.396e-23 111.0 COG0457@1|root,COG0457@2|Bacteria 237368.SCABRO_02318|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD2_k127_974417_9 909663.KI867151_gene3093 7.45e-06 54.0 COG2204@1|root,COG2204@2|Bacteria,1NH9G@1224|Proteobacteria,42ZAJ@68525|delta/epsilon subdivisions,2WU3D@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8,Sigma54_activat DYD2_k127_979615_1 324602.Caur_3056 1.879e-110 368.0 COG2271@1|root,COG2271@2|Bacteria 2|Bacteria G transmembrane transporter activity - - - - - - - - - - - - MFS_1 DYD2_k127_979615_2 1286106.MPL1_08417 3.571e-58 223.0 COG2199@1|root,COG2202@1|root,COG3614@1|root,COG2199@2|Bacteria,COG2202@2|Bacteria,COG3614@2|Bacteria,1NWNJ@1224|Proteobacteria 1224|Proteobacteria T PAS domain containing protein - - 2.7.7.65 ko:K21084 ko02026,map02026 - - - ko00000,ko00001,ko01000 - - - CHASE,EAL,GAF_2,GGDEF,PAS,PAS_3,PAS_4,PAS_9,SpoIIE DYD2_k127_979615_0 1005048.CFU_1716 3.828e-215 692.0 COG3459@1|root,COG3459@2|Bacteria,1MVNX@1224|Proteobacteria,2VKDG@28216|Betaproteobacteria,472GN@75682|Oxalobacteraceae 28216|Betaproteobacteria G Glycosyl hydrolase 36 superfamily, catalytic domain - - - ko:K13688 - - - - ko00000,ko01000,ko01003 - GH94,GT84 - Glyco_hydro_36,Glyco_transf_36,Glycoamylase DYD2_k127_981968_1 344747.PM8797T_16917 1.332e-102 340.0 COG0276@1|root,COG0276@2|Bacteria,2IX75@203682|Planctomycetes 203682|Planctomycetes H Catalyzes the ferrous insertion into protoporphyrin IX hemH GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 ko:K01772 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R00310,R11329 RC01012 ko00000,ko00001,ko00002,ko01000 - - - Ferrochelatase DYD2_k127_981968_0 530564.Psta_0166 3.54e-143 464.0 COG0407@1|root,COG1587@1|root,COG0407@2|Bacteria,COG1587@2|Bacteria,2IXZG@203682|Planctomycetes 203682|Planctomycetes H Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III hemE - 4.1.1.37 ko:K01599 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03197,R04972 RC00872 ko00000,ko00001,ko00002,ko01000 - - - HEM4,URO-D DYD2_k127_984661_0 1232410.KI421428_gene1054 5.628e-125 412.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WKJX@28221|Deltaproteobacteria,43S25@69541|Desulfuromonadales 28221|Deltaproteobacteria T Domains REC, sigma54 interaction, HTH8 - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD2_k127_98838_0 448385.sce2805 0.0 1254.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,42MF6@68525|delta/epsilon subdivisions,2WJ8D@28221|Deltaproteobacteria 28221|Deltaproteobacteria V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran DYD2_k127_988658_0 398767.Glov_0469 2.06e-123 410.0 COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,42M5E@68525|delta/epsilon subdivisions,2WIV6@28221|Deltaproteobacteria 28221|Deltaproteobacteria J ribonuclease Rne Rng family cafA - 3.1.26.12 ko:K08300,ko:K08301 ko03018,map03018 M00394 - - ko00000,ko00001,ko00002,ko01000,ko03009,ko03019 - - - RNase_E_G,S1 DYD2_k127_988658_1 485913.Krac_8693 5.378e-58 213.0 COG0596@1|root,COG0596@2|Bacteria,2G7BF@200795|Chloroflexi 200795|Chloroflexi S PFAM alpha beta hydrolase fold - - - - - - - - - - - - Abhydrolase_6 DYD2_k127_988658_2 1267534.KB906755_gene4695 4.139e-39 153.0 COG1629@1|root,COG4771@2|Bacteria,3Y33S@57723|Acidobacteria,2JK9M@204432|Acidobacteriia 204432|Acidobacteriia P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec ## 3871 queries scanned ## Total time (seconds): 7.953320026397705 ## Rate: 486.71 q/s