## Sun Mar 16 16:09:28 2025
## emapper-2.1.9
## /home/zhangkaihang/.conda/envs/eggnog-mapper/bin/emapper.py -i /home/zhangkaihang/metadata_analysis/metawrap/paddysoil/4paddy/bin4gtdbtk/DYD3_bin.10.fa -m mmseqs --itype genome -o DYD3_bin.10 --output_dir /home/zhangkaihang/metadata_analysis/eggnog-mapper/paddysoil/4paddy/DYD3_bin.10 --cpu 8
##
#query	seed_ortholog	evalue	score	eggNOG_OGs	max_annot_lvl	COG_category	Description	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	PFAMs
DYD3_k127_101455_1	1479238.JQMZ01000001_gene2314	5.311e-185	585.0	COG1868@1|root,COG1868@2|Bacteria,1MX01@1224|Proteobacteria,2TR4F@28211|Alphaproteobacteria,43WKX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliM	-	-	ko:K02416	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliM,FliMN_C
DYD3_k127_101455_10	1161401.ASJA01000004_gene2340	1.04e-43	166.0	COG1580@1|root,COG1580@2|Bacteria,1RH5D@1224|Proteobacteria,2U7QV@28211|Alphaproteobacteria,43YCA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Controls the rotational direction of flagella during chemotaxis	-	-	-	ko:K02415	-	-	-	-	ko00000,ko02035	-	-	-	FliL
DYD3_k127_101455_7	1161401.ASJA01000004_gene2341	3.953e-61	219.0	COG4786@1|root,COG4786@2|Bacteria,1PZ24@1224|Proteobacteria,2U06G@28211|Alphaproteobacteria,43Y31@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgF	-	-	ko:K02391,ko:K02392	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_101455_3	1161401.ASJA01000004_gene2342	1.109e-107	368.0	COG4786@1|root,COG4786@2|Bacteria,1MVMA@1224|Proteobacteria,2TRR4@28211|Alphaproteobacteria,43ZFJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	the Bradyrhizobium protein in this cluster is associated with the thick flagella	flgG	-	-	ko:K02392	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_101455_8	1479238.JQMZ01000001_gene2318	1.371e-57	212.0	COG1261@1|root,COG1261@2|Bacteria,1Q409@1224|Proteobacteria,2VAI3@28211|Alphaproteobacteria,43YQZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly	-	-	-	ko:K02386	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	ChapFlgA
DYD3_k127_101455_5	1333998.M2A_1236	3.376e-70	267.0	COG2063@1|root,COG2063@2|Bacteria,1RDEY@1224|Proteobacteria,2TRHN@28211|Alphaproteobacteria,4BPYB@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation	flgH	-	-	ko:K02393	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlgH
DYD3_k127_101455_11	291985.CCSI01000003_gene159	4.809e-35	141.0	COG1595@1|root,COG1595@2|Bacteria,1PBHM@1224|Proteobacteria,2UB0K@28211|Alphaproteobacteria,2K75F@204457|Sphingomonadales	204457|Sphingomonadales	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	-	-	-	-	-	-	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_101455_9	366602.Caul_3687	7.713e-57	201.0	COG1734@1|root,COG1734@2|Bacteria,1RD08@1224|Proteobacteria,2U74V@28211|Alphaproteobacteria,2KGGH@204458|Caulobacterales	204458|Caulobacterales	T	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters	dksA	-	-	ko:K06204	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000,ko03009,ko03021	-	-	-	zf-dskA_traR
DYD3_k127_101455_13	1161401.ASJA01000004_gene2349	1.558e-16	85.0	2E5SK@1|root,330GZ@2|Bacteria,1N7R1@1224|Proteobacteria,2UFAX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	flagellar assembly	fliX	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	FliX
DYD3_k127_101455_2	1161401.ASJA01000004_gene2350	2.278e-144	467.0	COG1706@1|root,COG1706@2|Bacteria,1MVKW@1224|Proteobacteria,2TQNX@28211|Alphaproteobacteria,43WRI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation	flgI	GO:0005575,GO:0005623,GO:0009288,GO:0009425,GO:0042597,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464	-	ko:K02394	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlgI
DYD3_k127_101455_14	1122613.ATUP01000001_gene523	2.008e-16	85.0	COG3951@1|root,COG3951@2|Bacteria,1N7K5@1224|Proteobacteria,2UFY2@28211|Alphaproteobacteria,43YUE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	MNO	Rod binding protein	cheL	-	-	-	-	-	-	-	-	-	-	-	Rod-binding
DYD3_k127_101455_12	450851.PHZ_c1937	2.68e-26	113.0	2E0PV@1|root,32W8K@2|Bacteria,1N197@1224|Proteobacteria,2UCAE@28211|Alphaproteobacteria,2KH4C@204458|Caulobacterales	204458|Caulobacterales	-	-	flbY	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_101455_0	394221.Mmar10_1956	4.05e-228	736.0	COG1520@1|root,COG1520@2|Bacteria,1P31B@1224|Proteobacteria,2U4EC@28211|Alphaproteobacteria,43X8T@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_101455_6	1120983.KB894571_gene2495	5.33e-68	243.0	COG2304@1|root,COG2304@2|Bacteria,1PH4N@1224|Proteobacteria,2TQTJ@28211|Alphaproteobacteria,1JNUX@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1194)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1194
DYD3_k127_101455_4	1161401.ASJA01000004_gene2182	7.229e-85	290.0	COG1861@1|root,COG1861@2|Bacteria,1RG42@1224|Proteobacteria,2UABZ@28211|Alphaproteobacteria,43X60@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Cytidylyltransferase	-	-	-	ko:K07257	-	-	-	-	ko00000	-	-	-	CTP_transf_3
DYD3_k127_1025477_0	1038859.AXAU01000001_gene2978	4.555e-269	848.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,3JSW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	iorB	-	1.3.99.16	ko:K07303	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C2
DYD3_k127_1025477_1	1123269.NX02_26435	2.111e-69	239.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U6Z6@28211|Alphaproteobacteria,2K4B2@204457|Sphingomonadales	204457|Sphingomonadales	C	COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs	-	-	1.3.99.16	ko:K07302	-	-	-	-	ko00000,ko01000	-	-	-	Fer2,Fer2_2
DYD3_k127_1025477_3	1088721.NSU_2826	9.07e-10	70.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria,2KE0P@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1025477_2	627192.SLG_09880	1.625e-12	79.0	28MSC@1|root,2ZB0S@2|Bacteria,1NG2A@1224|Proteobacteria,2VG0A@28211|Alphaproteobacteria,2KBBC@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1052550_13	228405.HNE_2367	1.808e-34	139.0	COG0115@1|root,COG0115@2|Bacteria,1MZAK@1224|Proteobacteria,2U9QU@28211|Alphaproteobacteria,43YB6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EH	COG0115 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase	-	-	2.6.1.42,4.1.3.38	ko:K00826,ko:K02619	ko00270,ko00280,ko00290,ko00770,ko00790,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map00790,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R05553,R10991	RC00006,RC00036,RC01843,RC02148	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_4
DYD3_k127_1052550_9	314254.OA2633_05897	8.313e-46	174.0	COG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,2U981@28211|Alphaproteobacteria,43XS7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF541)	omp28	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	ko:K09807	-	-	-	-	ko00000	-	-	-	SIMPL
DYD3_k127_1052550_8	1382303.JPOM01000001_gene209	8.237e-47	173.0	COG0853@1|root,COG0853@2|Bacteria,1RI1B@1224|Proteobacteria,2U7BE@28211|Alphaproteobacteria,2KJR5@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine	panD	-	4.1.1.11	ko:K01579	ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110	M00119	R00489	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Asp_decarbox
DYD3_k127_1052550_7	383381.EH30_09055	3.262e-59	224.0	COG0454@1|root,COG0454@2|Bacteria,1RDBA@1224|Proteobacteria,2TTF2@28211|Alphaproteobacteria,2K4MI@204457|Sphingomonadales	204457|Sphingomonadales	K	Acetyltransferase (GNAT) family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_1052550_3	1449049.JONW01000005_gene1641	3.444e-127	427.0	COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,2TRC5@28211|Alphaproteobacteria,2KG6X@204458|Caulobacterales	204458|Caulobacterales	P	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	-	-	-	ko:K03455	-	-	-	-	ko00000	2.A.37	-	-	Na_H_Exchanger,TrkA_N
DYD3_k127_1052550_5	1449049.JONW01000008_gene494	2.405e-90	331.0	COG3662@1|root,COG3662@2|Bacteria,1R50Q@1224|Proteobacteria,2TSG5@28211|Alphaproteobacteria,2KI9P@204458|Caulobacterales	204458|Caulobacterales	S	Uncharacterized protein conserved in bacteria (DUF2236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2236
DYD3_k127_1052550_10	1280941.HY2_03180	2.183e-43	162.0	2F8I2@1|root,3156M@2|Bacteria,1PV79@1224|Proteobacteria,2V6P4@28211|Alphaproteobacteria,43XUD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1052550_14	1449049.JONW01000012_gene117	4.435e-31	127.0	2EHX7@1|root,33BNT@2|Bacteria,1NJUI@1224|Proteobacteria,2UIZW@28211|Alphaproteobacteria,2KIYE@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1052550_11	1131814.JAFO01000001_gene251	2.058e-37	156.0	COG3801@1|root,COG3801@2|Bacteria,1REJV@1224|Proteobacteria,2UEVT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	YjbR	-	-	-	-	-	-	-	-	-	-	-	-	YjbR
DYD3_k127_1052550_12	935840.JAEQ01000005_gene1143	7.941e-35	139.0	COG2032@1|root,COG2032@2|Bacteria,1RGV4@1224|Proteobacteria,2UC22@28211|Alphaproteobacteria,43KW9@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Destroys radicals which are normally produced within the cells and which are toxic to biological systems	sodC	GO:0005575,GO:0005623,GO:0042597,GO:0044464	1.15.1.1	ko:K04565	ko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Cu
DYD3_k127_1052550_4	1082933.MEA186_23091	4.748e-111	368.0	arCOG11957@1|root,2Z84N@2|Bacteria,1QIVS@1224|Proteobacteria,2U486@28211|Alphaproteobacteria,43IB7@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1052550_2	1292034.OR37_03944	3.72e-131	427.0	COG0158@1|root,COG0158@2|Bacteria,1MW0E@1224|Proteobacteria,2TSKS@28211|Alphaproteobacteria,2KG84@204458|Caulobacterales	204458|Caulobacterales	G	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1	fbp	-	3.1.3.11	ko:K03841	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910	M00003,M00165,M00167,M00344	R00762,R04780	RC00017	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	FBPase
DYD3_k127_1052550_15	1304877.KI519400_gene892	6.507e-14	74.0	COG3668@1|root,COG3668@2|Bacteria,1NNPY@1224|Proteobacteria,2V07P@28211|Alphaproteobacteria,3K26Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_1052550_6	1123519.PSJM300_10790	1.834e-85	295.0	2C3W6@1|root,2ZTCK@2|Bacteria,1RG7S@1224|Proteobacteria,1SEU9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1052550_1	670307.HYPDE_26973	1.069e-169	547.0	COG1746@1|root,COG1746@2|Bacteria,1QVZP@1224|Proteobacteria	1224|Proteobacteria	J	tRNA cytidylyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1052550_0	555793.WSK_1165	6.009e-193	604.0	COG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,2TS6C@28211|Alphaproteobacteria,2K260@204457|Sphingomonadales	204457|Sphingomonadales	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	rpoD	-	-	ko:K03086	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
DYD3_k127_1074983_0	627192.SLG_27300	1.213e-115	391.0	COG3670@1|root,COG3670@2|Bacteria,1NR29@1224|Proteobacteria,2UNTM@28211|Alphaproteobacteria,2K8W8@204457|Sphingomonadales	204457|Sphingomonadales	C	Retinal pigment epithelial membrane protein	-	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_1074983_1	311402.Avi_5950	3.079e-112	379.0	COG3670@1|root,COG3670@2|Bacteria,1MY1X@1224|Proteobacteria,2VCNC@28211|Alphaproteobacteria,4BJVX@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	Retinal pigment epithelial membrane protein	-	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_1074983_2	946235.CAER01000008_gene395	2.31e-84	292.0	COG4993@1|root,COG4993@2|Bacteria,1V091@1239|Firmicutes,4HCPE@91061|Bacilli	91061|Bacilli	CG	PQQ enzyme repeat	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_1088908_25	582402.Hbal_1863	7.305e-65	226.0	COG1494@1|root,COG1494@2|Bacteria,1MUB1@1224|Proteobacteria,2TSPE@28211|Alphaproteobacteria,43WR4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	in Escherichia coli this protein forms a dimer and binds manganese	glpX	-	3.1.3.11,3.1.3.37	ko:K02446,ko:K11532	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00165,M00167	R00762,R01845,R04780	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FBPase_glpX
DYD3_k127_1088908_7	394221.Mmar10_0644	1.972e-193	612.0	COG0436@1|root,COG0436@2|Bacteria,1MWS8@1224|Proteobacteria,2TQVM@28211|Alphaproteobacteria,440Y4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Aminotransferase class I and II	dapL	-	2.6.1.17	ko:K14261,ko:K14267	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R04475	RC00006	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_1088908_3	366602.Caul_3018	1.415e-228	731.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TR7S@28211|Alphaproteobacteria,2KF79@204458|Caulobacterales	204458|Caulobacterales	I	poly(R)-hydroxyalkanoic acid synthase	-	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	PhaC_N
DYD3_k127_1088908_29	1238182.C882_4398	1.907e-58	229.0	COG1262@1|root,COG1262@2|Bacteria,1NQ5K@1224|Proteobacteria,2U2VJ@28211|Alphaproteobacteria,2JS16@204441|Rhodospirillales	204441|Rhodospirillales	T	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase
DYD3_k127_1088908_24	1479238.JQMZ01000001_gene1892	4.634e-66	237.0	COG0103@1|root,COG0103@2|Bacteria,1RD4A@1224|Proteobacteria,2U5B5@28211|Alphaproteobacteria,43XI6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the universal ribosomal protein uS9 family	rpsI	GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02996	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S9
DYD3_k127_1088908_22	1123503.KB908059_gene313	7.681e-68	235.0	COG0102@1|root,COG0102@2|Bacteria,1RA11@1224|Proteobacteria,2U5FM@28211|Alphaproteobacteria,2KG9U@204458|Caulobacterales	204458|Caulobacterales	J	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	rplM	-	-	ko:K02871	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L13
DYD3_k127_1088908_41	1122613.ATUP01000002_gene2741	6.669e-16	89.0	COG4247@1|root,COG4247@2|Bacteria,1NV5I@1224|Proteobacteria,2UR85@28211|Alphaproteobacteria,43ZWF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1088908_18	1123503.KB908059_gene310	1.497e-100	342.0	COG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,2TR0M@28211|Alphaproteobacteria,2KF6F@204458|Caulobacterales	204458|Caulobacterales	O	Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group	ctaA	-	-	ko:K02259	ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714	M00154	R07412	RC00769	ko00000,ko00001,ko00002,ko03029	3.D.4.4	-	-	COX15-CtaA
DYD3_k127_1088908_37	1123503.KB908059_gene306	3.364e-37	142.0	COG0776@1|root,COG0776@2|Bacteria,1RH5Z@1224|Proteobacteria,2UCDG@28211|Alphaproteobacteria,2KH01@204458|Caulobacterales	204458|Caulobacterales	K	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	himA	-	-	ko:K04764	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_1088908_12	414684.RC1_1327	1.455e-131	441.0	COG0332@1|root,COG0332@2|Bacteria,1MU9N@1224|Proteobacteria,2TR60@28211|Alphaproteobacteria,2JQQP@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids	fabH	-	2.3.1.180	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00082,M00083	R10707	RC00004,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACP_syn_III,ACP_syn_III_C
DYD3_k127_1088908_14	1161401.ASJA01000009_gene1761	2.05e-127	417.0	COG0416@1|root,COG0416@2|Bacteria,1MVM3@1224|Proteobacteria,2TR53@28211|Alphaproteobacteria,43WV4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA	plsX	-	2.3.1.15	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FA_synthesis
DYD3_k127_1088908_38	1333998.M2A_0605	1.472e-31	130.0	COG5452@1|root,COG5452@2|Bacteria,1N12T@1224|Proteobacteria,2UCES@28211|Alphaproteobacteria,4BQT7@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Ubiquinol-cytochrome C chaperone	-	-	-	ko:K17662	-	-	-	-	ko00000,ko03029	-	-	-	Ubiq_cyt_C_chap
DYD3_k127_1088908_32	1161401.ASJA01000009_gene1763	6.914e-48	177.0	COG2913@1|root,COG2913@2|Bacteria,1RHYM@1224|Proteobacteria,2UBU9@28211|Alphaproteobacteria,43XVP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	COG2913 Small protein A (tmRNA-binding)	MA20_36760	-	-	-	-	-	-	-	-	-	-	-	SmpA_OmlA
DYD3_k127_1088908_0	1479238.JQMZ01000001_gene1721	0.0	1008.0	COG3808@1|root,COG3808@2|Bacteria,1MUQ3@1224|Proteobacteria,2TR9G@28211|Alphaproteobacteria,43WSI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force	hppA	-	3.6.1.1	ko:K15987	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	3.A.10.1	-	-	H_PPase
DYD3_k127_1088908_42	1161401.ASJA01000009_gene1765	1.345e-15	84.0	2AKH4@1|root,31B91@2|Bacteria,1Q71F@1224|Proteobacteria,2V6Z6@28211|Alphaproteobacteria,43YPA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1088908_19	1122613.ATUP01000002_gene2728	1.88e-87	301.0	COG0611@1|root,COG0611@2|Bacteria,1MU9X@1224|Proteobacteria,2TTI6@28211|Alphaproteobacteria,43XN4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1	thiL	-	2.7.4.16	ko:K00946	ko00730,ko01100,map00730,map01100	M00127	R00617	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_1088908_36	1122613.ATUP01000002_gene2727	6.066e-38	153.0	COG0781@1|root,COG0781@2|Bacteria,1RHFZ@1224|Proteobacteria,2UBQA@28211|Alphaproteobacteria,43XVD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons	nusB	-	-	ko:K03625	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	NusB
DYD3_k127_1088908_34	1525715.IX54_13875	6.177e-40	153.0	COG0054@1|root,COG0054@2|Bacteria,1RD9J@1224|Proteobacteria,2U9IZ@28211|Alphaproteobacteria,2PV83@265|Paracoccus	28211|Alphaproteobacteria	H	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin	ribH	GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.78	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R04457	RC00960	ko00000,ko00001,ko00002,ko01000	-	-	-	DMRL_synthase
DYD3_k127_1088908_23	450851.PHZ_c1670	1.436e-66	233.0	COG0307@1|root,COG0307@2|Bacteria,1MUMB@1224|Proteobacteria,2U3RS@28211|Alphaproteobacteria,2KGE4@204458|Caulobacterales	204458|Caulobacterales	H	Riboflavin synthase	ribE	-	2.5.1.9	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00066	RC00958,RC00960	ko00000,ko00001,ko00002,ko01000	-	-	-	Lum_binding
DYD3_k127_1088908_27	1229204.AMYY01000001_gene2761	1.59e-62	224.0	COG1985@1|root,COG1985@2|Bacteria,1N4VZ@1224|Proteobacteria,2TXAC@28211|Alphaproteobacteria,4BTGG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	RibD C-terminal domain	-	-	1.1.1.193,3.5.4.26	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	RibD_C
DYD3_k127_1088908_28	450851.PHZ_c1674	5.488e-62	216.0	COG1327@1|root,COG1327@2|Bacteria,1RE7V@1224|Proteobacteria,2U75W@28211|Alphaproteobacteria,2KG9K@204458|Caulobacterales	204458|Caulobacterales	K	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	nrdR	-	-	ko:K07738	-	-	-	-	ko00000,ko03000	-	-	-	ATP-cone
DYD3_k127_1088908_6	1122613.ATUP01000002_gene2721	1.475e-196	621.0	COG0112@1|root,COG0112@2|Bacteria,1MUIS@1224|Proteobacteria,2TQKT@28211|Alphaproteobacteria,43WTN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism	glyA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.1.2.1	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	M00140,M00141,M00346,M00532	R00945,R09099	RC00022,RC00112,RC01583,RC02958	ko00000,ko00001,ko00002,ko01000	-	-	-	SHMT
DYD3_k127_1088908_30	1479238.JQMZ01000001_gene1711	8.055e-57	201.0	COG4957@1|root,COG4957@2|Bacteria,1RGUW@1224|Proteobacteria,2U99M@28211|Alphaproteobacteria,43XWX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	ROS/MUCR transcriptional regulator protein	-	-	-	-	-	-	-	-	-	-	-	-	ROS_MUCR
DYD3_k127_1088908_9	394221.Mmar10_1540	2.214e-184	584.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TQXI@28211|Alphaproteobacteria,43X2C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	5-aminolevulinic acid synthase	hemA	-	2.3.1.37	ko:K00643	ko00260,ko00860,ko01100,ko01110,map00260,map00860,map01100,map01110	-	R00830	RC00004,RC02815	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_1088908_26	1161401.ASJA01000009_gene1776	6.625e-64	223.0	COG1846@1|root,COG1846@2|Bacteria,1RA1V@1224|Proteobacteria,2U5W6@28211|Alphaproteobacteria,43XJ3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	MarR family transcriptional regulator	mucS	-	-	-	-	-	-	-	-	-	-	-	HTH_27
DYD3_k127_1088908_11	1122613.ATUP01000002_gene2714	2.626e-140	452.0	COG0113@1|root,COG0113@2|Bacteria,1MWMW@1224|Proteobacteria,2TS3F@28211|Alphaproteobacteria,43X5D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Belongs to the ALAD family	hemB	GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.2.1.24	ko:K01698	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00036	RC00918,RC01781	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ALAD
DYD3_k127_1088908_8	69395.JQLZ01000005_gene3687	1.199e-186	594.0	COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,2KFYU@204458|Caulobacterales	204458|Caulobacterales	P	Ammonium Transporter	-	-	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	Ammonium_transp
DYD3_k127_1088908_15	394221.Mmar10_1552	1.907e-116	383.0	COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,2TT50@28211|Alphaproteobacteria,43WJC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	MA20_25935	-	1.1.1.31,1.1.1.60	ko:K00020,ko:K00042	ko00280,ko00630,ko01100,map00280,map00630,map01100	-	R01745,R01747,R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
DYD3_k127_1088908_5	1479238.JQMZ01000001_gene2556	2.145e-206	668.0	COG2366@1|root,COG2366@2|Bacteria,1MVMH@1224|Proteobacteria,2TS4D@28211|Alphaproteobacteria,43ZK1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG2366 Protein related to penicillin acylase	quiP	-	3.5.1.11	ko:K01434	ko00311,ko01130,map00311,map01130	-	R02170	RC00166,RC00328	ko00000,ko00001,ko01000,ko01002	-	-	-	Penicil_amidase
DYD3_k127_1088908_13	1161401.ASJA01000009_gene1806	2.731e-128	416.0	COG1360@1|root,COG1360@2|Bacteria,1MW1Y@1224|Proteobacteria,2TTW2@28211|Alphaproteobacteria,43W4M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	chemotaxis MotB protein	motB	-	-	ko:K02557	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	MotB_plug,OmpA
DYD3_k127_1088908_20	314254.OA2633_01866	8.925e-87	295.0	COG2935@1|root,COG2935@2|Bacteria,1MW62@1224|Proteobacteria,2TQY8@28211|Alphaproteobacteria,43X1R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate	ate	GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575	2.3.2.29	ko:K21420	-	-	R11547,R11548	RC00064	ko00000,ko01000	-	-	-	ATE_C,ATE_N
DYD3_k127_1088908_39	1479235.KK366039_gene2186	3.486e-18	97.0	COG4665@1|root,COG4665@2|Bacteria,1RHBW@1224|Proteobacteria,1S5Y0@1236|Gammaproteobacteria,1XK0E@135619|Oceanospirillales	135619|Oceanospirillales	Q	TRAP-type mannitol chloroaromatic compound transport system, small permease component	gtrA	-	-	-	-	-	-	-	-	-	-	-	DctQ
DYD3_k127_1088908_16	314254.OA2633_01841	4.869e-108	359.0	COG0501@1|root,COG0501@2|Bacteria,1MUV4@1224|Proteobacteria,2TS3N@28211|Alphaproteobacteria,43X2J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Belongs to the peptidase M48B family	htpX	-	-	ko:K03799	-	M00743	-	-	ko00000,ko00002,ko01000,ko01002	-	-	-	Peptidase_M48
DYD3_k127_1088908_21	314254.OA2633_01836	3.075e-72	248.0	COG1704@1|root,COG1704@2|Bacteria,1MVH0@1224|Proteobacteria,2U6EM@28211|Alphaproteobacteria,43XEZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	LemA family	MA20_42455	-	-	ko:K03744	-	-	-	-	ko00000	-	-	-	LemA
DYD3_k127_1088908_1	1161401.ASJA01000009_gene1814	3.988e-313	975.0	COG0188@1|root,COG0188@2|Bacteria,1MURI@1224|Proteobacteria,2TQRQ@28211|Alphaproteobacteria,43WQA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	parC	-	-	ko:K02621	-	-	-	-	ko00000,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
DYD3_k127_1088908_2	450851.PHZ_c1324	4.196e-233	736.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TRFY@28211|Alphaproteobacteria,2KF1R@204458|Caulobacterales	204458|Caulobacterales	J	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	gatA	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
DYD3_k127_1088908_35	1280947.HY30_15630	5.848e-39	148.0	COG0721@1|root,COG0721@2|Bacteria,1MZQP@1224|Proteobacteria,2UBSZ@28211|Alphaproteobacteria,43Y62@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatC	-	6.3.5.6,6.3.5.7	ko:K02435	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Glu-tRNAGln
DYD3_k127_1088908_43	65071.PYU1_T000282	4.538e-10	70.0	COG0666@1|root,KOG4177@2759|Eukaryota,1MIVV@121069|Pythiales	121069|Pythiales	T	Ankyrin repeats (many copies)	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2
DYD3_k127_1088908_31	551275.KB899544_gene1519	1.11e-48	182.0	COG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,2U98Y@28211|Alphaproteobacteria,43XMP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA	ruvX	GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	-	ko:K07447	-	-	-	-	ko00000,ko01000	-	-	-	RuvX
DYD3_k127_1088908_4	59538.XP_005968211.1	3.137e-216	676.0	COG0807@1|root,KOG1284@2759|Eukaryota,39JRY@33154|Opisthokonta	33154|Opisthokonta	H	GTP cyclohydrolase N terminal	-	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	-	-	-	-	-	-	-	-	-	-	GTP_CH_N,GTP_cyclohydro2
DYD3_k127_1088908_10	1121123.AUAO01000001_gene875	9.781e-145	470.0	COG0807@1|root,COG0807@2|Bacteria,1MWUM@1224|Proteobacteria,2U0SP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Protein of unknown function (DUF1688)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1688
DYD3_k127_1088908_17	1211115.ALIQ01000034_gene2006	3.106e-104	341.0	COG0035@1|root,COG0035@2|Bacteria,1MV4N@1224|Proteobacteria,2TRS7@28211|Alphaproteobacteria,3NC1R@45404|Beijerinckiaceae	28211|Alphaproteobacteria	F	Uracil phosphoribosyltransferase	upp	GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.2.9	ko:K00761	ko00240,ko01100,map00240,map01100	-	R00966	RC00063	ko00000,ko00001,ko01000	-	-	-	UPRTase
DYD3_k127_1088908_40	1479238.JQMZ01000001_gene383	4.997e-16	85.0	2CJDM@1|root,32Z3W@2|Bacteria,1N7ZP@1224|Proteobacteria,2UF79@28211|Alphaproteobacteria,43YPZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	YMGG-like Gly-zipper	-	-	-	-	-	-	-	-	-	-	-	-	Gly-zipper_Omp,Gly-zipper_YMGG
DYD3_k127_1088908_33	1121949.AQXT01000002_gene1169	4.643e-47	174.0	COG1873@1|root,COG1873@2|Bacteria,1MYBI@1224|Proteobacteria,2U97H@28211|Alphaproteobacteria,43ZUM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
DYD3_k127_1105516_12	1297569.MESS2_1160099	8.594e-37	141.0	COG3813@1|root,COG3813@2|Bacteria,1N712@1224|Proteobacteria,2UD3Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1272)	-	-	-	ko:K09984	-	-	-	-	ko00000	-	-	-	DUF1272
DYD3_k127_1105516_9	1038860.AXAP01000025_gene1703	1.946e-52	185.0	COG0831@1|root,COG0831@2|Bacteria,1RGXE@1224|Proteobacteria,2U947@28211|Alphaproteobacteria,3JZJV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the urease gamma subunit family	ureA	-	3.5.1.5	ko:K01430,ko:K14048	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Urease_beta,Urease_gamma
DYD3_k127_1105516_8	935261.JAGL01000020_gene389	1.999e-57	216.0	COG0829@1|root,COG0829@2|Bacteria,1RABD@1224|Proteobacteria,2U57R@28211|Alphaproteobacteria,43I2J@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter	ureD	-	-	ko:K03190	-	-	-	-	ko00000	-	-	-	UreD
DYD3_k127_1105516_11	349521.HCH_01092	4.896e-47	175.0	COG3194@1|root,COG3194@2|Bacteria,1RH5G@1224|Proteobacteria,1T0X7@1236|Gammaproteobacteria,1XKNF@135619|Oceanospirillales	135619|Oceanospirillales	F	Ureidoglycolate lyase	allA	-	4.3.2.3	ko:K01483	ko00230,ko01100,map00230,map01100	-	R00776	RC00153,RC00379	ko00000,ko00001,ko01000	-	-	-	Ureidogly_lyase
DYD3_k127_1105516_3	1122137.AQXF01000001_gene3064	9.886e-145	487.0	COG3748@1|root,COG3748@2|Bacteria,1MWHB@1224|Proteobacteria,2TSXN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	membrane	MA20_17625	-	-	-	-	-	-	-	-	-	-	-	Urate_ox_N
DYD3_k127_1105516_0	366602.Caul_3719	6.507e-319	996.0	COG4631@1|root,COG4631@2|Bacteria,1NQSR@1224|Proteobacteria,2TTAB@28211|Alphaproteobacteria,2KF8W@204458|Caulobacterales	204458|Caulobacterales	C	xanthine dehydrogenase, molybdopterin binding subunit	-	-	1.17.1.4	ko:K13482	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
DYD3_k127_1105516_1	1122137.AQXF01000001_gene3067	3.745e-164	538.0	COG4630@1|root,COG4630@2|Bacteria,1MWI1@1224|Proteobacteria,2TR3Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	Xanthine dehydrogenase iron-sulfur cluster and FAD-binding subunit A	xdhA	-	1.17.1.4	ko:K13481	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5,Fer2,Fer2_2
DYD3_k127_1105516_13	604331.AUHY01000020_gene1921	3.201e-36	147.0	COG2351@1|root,COG2351@2|Bacteria,1WKHK@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	S	Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily	-	GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009112,GO:0009987,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:1901360,GO:1901564	3.5.2.17	ko:K07127	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R06601	RC03393	ko00000,ko00001,ko00002,ko01000,ko02000	9.B.35.1.2,9.B.35.2	-	-	Transthyretin
DYD3_k127_1105516_2	1122135.KB893166_gene3004	9.011e-148	474.0	COG0726@1|root,COG0726@2|Bacteria,1MV3V@1224|Proteobacteria,2TR0I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Polysaccharide deacetylase	MA20_34855	GO:0000003,GO:0000272,GO:0003006,GO:0005575,GO:0005618,GO:0005619,GO:0005623,GO:0005631,GO:0005975,GO:0005976,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006037,GO:0006039,GO:0006040,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009272,GO:0009277,GO:0009653,GO:0009987,GO:0010383,GO:0010927,GO:0016043,GO:0016052,GO:0016998,GO:0017144,GO:0019953,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030437,GO:0030476,GO:0031160,GO:0031505,GO:0032502,GO:0032505,GO:0032989,GO:0034218,GO:0034232,GO:0034293,GO:0042244,GO:0042546,GO:0042737,GO:0043170,GO:0043934,GO:0043935,GO:0044036,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044277,GO:0044426,GO:0044462,GO:0044464,GO:0044703,GO:0045229,GO:0046348,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051321,GO:0051704,GO:0070590,GO:0070591,GO:0070726,GO:0070910,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071853,GO:0071854,GO:0071940,GO:0071944,GO:0071966,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903046	1.7.3.3,3.5.1.41	ko:K00365,ko:K01452	ko00230,ko00232,ko00520,ko01100,ko01120,map00230,map00232,map00520,map01100,map01120	M00546	R02106,R02333,R07981	RC00166,RC00300,RC02107,RC02551	ko00000,ko00001,ko00002,ko01000	-	-	-	OHCU_decarbox,Polysacc_deac_1
DYD3_k127_1105516_10	1118153.MOY_02019	2.035e-49	185.0	COG3195@1|root,COG3195@2|Bacteria,1RH9S@1224|Proteobacteria,1SAAD@1236|Gammaproteobacteria,1XS3S@135619|Oceanospirillales	135619|Oceanospirillales	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	OHCU_decarbox
DYD3_k127_1105516_6	1218084.BBJK01000032_gene3122	1.51e-125	409.0	COG4266@1|root,COG4266@2|Bacteria,1MXJK@1224|Proteobacteria,2VKRI@28216|Betaproteobacteria,1K1GK@119060|Burkholderiaceae	28216|Betaproteobacteria	F	Belongs to the allantoicase family	alc	-	3.5.3.4	ko:K01477	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R02422	RC00379,RC00712	ko00000,ko00001,ko00002,ko01000	-	-	-	Allantoicase
DYD3_k127_1105516_5	991905.SL003B_2613	1.574e-137	462.0	COG2943@1|root,COG2943@2|Bacteria,1MVXZ@1224|Proteobacteria,2TQU8@28211|Alphaproteobacteria,4BPXW@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Glycosyl transferase family 21	opgH	GO:0005575,GO:0016020	-	ko:K03669	-	-	-	-	ko00000,ko01000,ko01003,ko02000	4.D.3.1.1	GT2	-	Glyco_trans_2_3
DYD3_k127_1105516_4	378806.STAUR_3575	4.092e-138	460.0	COG3131@1|root,COG3131@2|Bacteria,1MUNX@1224|Proteobacteria,42QKA@68525|delta/epsilon subdivisions,2WK1I@28221|Deltaproteobacteria	28221|Deltaproteobacteria	P	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)	mdoG	-	-	ko:K03670	-	-	-	-	ko00000	-	-	-	MdoG
DYD3_k127_1105516_7	1192124.LIG30_0310	6.234e-85	285.0	COG0415@1|root,COG0415@2|Bacteria,1MV9Y@1224|Proteobacteria,2VITS@28216|Betaproteobacteria,1K2ZA@119060|Burkholderiaceae	28216|Betaproteobacteria	L	DNA photolyase	phrB	-	4.1.99.3	ko:K01669	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_photolyase,FAD_binding_7
DYD3_k127_1118783_16	1028307.EAE_08440	1.091e-19	93.0	COG3237@1|root,COG3237@2|Bacteria,1N6X4@1224|Proteobacteria,1SDHP@1236|Gammaproteobacteria,3X2SH@547|Enterobacter	1236|Gammaproteobacteria	S	Belongs to the UPF0337 (CsbD) family	yjbJ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	CsbD
DYD3_k127_1118783_17	1121479.AUBS01000001_gene3134	5.103e-16	90.0	COG1905@1|root,COG3743@1|root,COG1905@2|Bacteria,COG3743@2|Bacteria,1MWS2@1224|Proteobacteria,2TSEJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	COG1905 NADH ubiquinone oxidoreductase 24 kD subunit	nuoE	-	1.6.5.3,1.6.99.3	ko:K00334,ko:K03943	ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016	M00143,M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1,3.D.1.6	-	-	2Fe-2S_thioredx
DYD3_k127_1118783_12	78245.Xaut_3825	2.255e-30	135.0	COG2885@1|root,COG2885@2|Bacteria,1MWHF@1224|Proteobacteria,2TUGX@28211|Alphaproteobacteria,3EYQD@335928|Xanthobacteraceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	-	-	-	ko:K03286	-	-	-	-	ko00000,ko02000	1.B.6	-	-	BON,OmpA
DYD3_k127_1118783_22	551789.ATVJ01000001_gene2078	0.000136	55.0	COG3743@1|root,COG3743@2|Bacteria,1N662@1224|Proteobacteria,2UEIT@28211|Alphaproteobacteria,43YG4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	rRNA binding	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1118783_13	1280941.HY2_11745	6.805e-26	121.0	COG2885@1|root,COG2885@2|Bacteria,1MWHF@1224|Proteobacteria,2TUGX@28211|Alphaproteobacteria,43XWW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	MA20_22450	-	-	ko:K03286	-	-	-	-	ko00000,ko02000	1.B.6	-	-	BON,OmpA
DYD3_k127_1118783_19	1472418.BBJC01000004_gene1788	7.623e-14	83.0	2CBAE@1|root,31814@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1118783_1	1161401.ASJA01000001_gene496	3.168e-222	707.0	COG2225@1|root,COG2225@2|Bacteria,1MVEV@1224|Proteobacteria,2V6I4@28211|Alphaproteobacteria,43XC1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle	-	-	2.3.3.9	ko:K01638	ko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200	M00012	R00472	RC00004,RC00308,RC02747	ko00000,ko00001,ko00002,ko01000	-	-	-	Malate_synthase
DYD3_k127_1118783_5	1207058.L53_14390	2.517e-106	362.0	COG2358@1|root,COG2358@2|Bacteria,1Q1N5@1224|Proteobacteria,2U6X6@28211|Alphaproteobacteria,43X8Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	TRAP transporter solute receptor TAXI family	-	-	-	-	-	-	-	-	-	-	-	-	NMT1_3
DYD3_k127_1118783_20	754035.Mesau_02227	4.786e-07	63.0	COG0457@1|root,COG0457@2|Bacteria,1MVMG@1224|Proteobacteria,2TSGE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_3,TPR_1,TPR_10,TPR_11,TPR_12,TPR_16,TPR_2,TPR_6,TPR_8
DYD3_k127_1118783_10	1123229.AUBC01000032_gene3760	5.4e-61	220.0	COG4123@1|root,COG4123@2|Bacteria,1R48Y@1224|Proteobacteria,2TRKW@28211|Alphaproteobacteria,3K70P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
DYD3_k127_1118783_7	551789.ATVJ01000002_gene3024	1.408e-87	298.0	COG0421@1|root,COG0421@2|Bacteria,1MVV5@1224|Proteobacteria,2TQZ3@28211|Alphaproteobacteria,440B3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Spermine/spermidine synthase domain	speE	-	2.5.1.16	ko:K00797	ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100	M00034,M00133	R01920,R02869,R08359	RC00021,RC00053	ko00000,ko00001,ko00002,ko01000	-	-	-	Spermine_synt_N,Spermine_synth
DYD3_k127_1118783_15	927677.ALVU02000005_gene497	2.35e-20	100.0	2AX3E@1|root,31P1S@2|Bacteria,1G6PA@1117|Cyanobacteria	1117|Cyanobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF1176
DYD3_k127_1118783_2	1298858.AUEL01000009_gene4239	5.672e-218	684.0	COG0477@1|root,COG2814@2|Bacteria,1QV32@1224|Proteobacteria,2TW9N@28211|Alphaproteobacteria,43JBF@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_1118783_0	1449076.JOOE01000002_gene744	1.246e-228	715.0	COG0404@1|root,COG0404@2|Bacteria,1MWZS@1224|Proteobacteria,2TSVD@28211|Alphaproteobacteria,2K1VS@204457|Sphingomonadales	204457|Sphingomonadales	E	Aminomethyltransferase folate-binding domain	-	-	2.1.1.341	ko:K15066	ko00627,ko01120,map00627,map01120	-	R09271,R10136	RC00113,RC00392	ko00000,ko00001,ko01000	-	-	-	GCV_T,GCV_T_C
DYD3_k127_1118783_3	1370122.JHXQ01000003_gene1260	4.301e-165	543.0	COG1835@1|root,COG1835@2|Bacteria,1MV2W@1224|Proteobacteria,2TRT8@28211|Alphaproteobacteria,4B7WN@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
DYD3_k127_1118783_14	1502851.FG93_04276	1.109e-22	109.0	COG0500@1|root,COG2226@2|Bacteria	2|Bacteria	Q	methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_1118783_6	633149.Bresu_2044	4.001e-96	327.0	COG0715@1|root,COG0715@2|Bacteria	2|Bacteria	P	thiamine-containing compound biosynthetic process	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
DYD3_k127_1118783_18	748247.AZKH_3763	4.912e-14	81.0	2EH3C@1|root,33AVC@2|Bacteria,1NJZZ@1224|Proteobacteria	1224|Proteobacteria	S	GtrA-like protein	-	-	-	-	-	-	-	-	-	-	-	-	GtrA
DYD3_k127_1118783_8	384765.SIAM614_03720	1.216e-76	270.0	COG1216@1|root,COG1216@2|Bacteria,1RDAV@1224|Proteobacteria	1224|Proteobacteria	S	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1118783_9	1123060.JONP01000005_gene5560	2.314e-67	238.0	COG1209@1|root,COG1209@2|Bacteria,1RDR2@1224|Proteobacteria	1224|Proteobacteria	M	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon	-	-	-	-	-	-	-	-	-	-	-	-	NTP_transf_3,NTP_transferase
DYD3_k127_1118783_4	1123060.JONP01000005_gene5561	2.835e-111	383.0	COG2334@1|root,COG2334@2|Bacteria	2|Bacteria	S	homoserine kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	APH,LPG_synthase_TM
DYD3_k127_1118783_11	1123060.JONP01000005_gene5562	3.948e-34	149.0	COG0637@1|root,COG0637@2|Bacteria,1PUMZ@1224|Proteobacteria,2U52Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	haloacid dehalogenase-like hydrolase	-	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
DYD3_k127_1133696_1	402881.Plav_0355	0.0	1322.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,1JQMX@119043|Rhodobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	cusA	-	-	ko:K07787	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4	-	-	ACR_tran
DYD3_k127_1133696_17	398525.KB900701_gene1992	1.153e-41	157.0	COG3788@1|root,COG3788@2|Bacteria,1NBHH@1224|Proteobacteria,2UA0K@28211|Alphaproteobacteria,3JYVE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MAPEG family	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	MAPEG
DYD3_k127_1133696_10	935840.JAEQ01000001_gene2888	3.671e-82	281.0	COG3832@1|root,COG3832@2|Bacteria,1RAW4@1224|Proteobacteria,2U68J@28211|Alphaproteobacteria,43N5G@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_1133696_15	1038859.AXAU01000001_gene3827	8.59e-45	164.0	COG0640@1|root,COG0640@2|Bacteria,1RJ39@1224|Proteobacteria,2UA6C@28211|Alphaproteobacteria,3JZMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
DYD3_k127_1133696_11	391615.ABSJ01000033_gene695	1.411e-66	233.0	COG0500@1|root,COG2226@2|Bacteria,1RANW@1224|Proteobacteria,1SYQU@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	COG0500 SAM-dependent methyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_1133696_14	1317124.DW2_00110	3.294e-48	175.0	COG1553@1|root,COG1553@2|Bacteria,1RDFR@1224|Proteobacteria,2U9F0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	DsrE/DsrF-like family	-	-	-	ko:K06039	-	-	-	-	ko00000	-	-	-	DrsE
DYD3_k127_1133696_13	187303.BN69_0138	6.626e-60	215.0	COG0500@1|root,COG2226@2|Bacteria,1RASQ@1224|Proteobacteria	1224|Proteobacteria	Q	PFAM Methyltransferase type 11	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_1133696_3	666684.AfiDRAFT_0764	3.598e-216	676.0	COG0477@1|root,COG2814@2|Bacteria,1R2KY@1224|Proteobacteria,2TR2U@28211|Alphaproteobacteria,3JXR6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_1133696_7	187303.BN69_0140	1.299e-118	389.0	COG0491@1|root,COG0491@2|Bacteria,1MUDN@1224|Proteobacteria,2U247@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_1133696_6	929556.Solca_0753	1.081e-118	387.0	COG0500@1|root,COG2226@2|Bacteria,4NFRD@976|Bacteroidetes,1IVKT@117747|Sphingobacteriia	976|Bacteroidetes	Q	PFAM Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_1133696_8	1207063.P24_18107	1.811e-83	282.0	COG0607@1|root,COG0640@1|root,COG0607@2|Bacteria,COG0640@2|Bacteria,1R71B@1224|Proteobacteria,2TVMK@28211|Alphaproteobacteria,2JWJ8@204441|Rhodospirillales	204441|Rhodospirillales	KP	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20,Rhodanese
DYD3_k127_1133696_5	1057002.KB905370_gene4163	1.042e-150	496.0	COG0477@1|root,COG2814@2|Bacteria,1MW59@1224|Proteobacteria,2TRA3@28211|Alphaproteobacteria,4B863@82115|Rhizobiaceae	28211|Alphaproteobacteria	EGP	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_1133696_9	1292034.OR37_01084	6.065e-83	281.0	COG0605@1|root,COG0605@2|Bacteria,1R4Z3@1224|Proteobacteria,2U38P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Iron/manganese superoxide dismutases, C-terminal domain	chrC	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C
DYD3_k127_1133696_20	69395.JQLZ01000001_gene3187	2.311e-39	151.0	2B9KW@1|root,322Z5@2|Bacteria,1RJJB@1224|Proteobacteria,2UAVD@28211|Alphaproteobacteria,2KGS6@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1133696_0	190650.CC_2390	0.0	1549.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,2KG04@204458|Caulobacterales	204458|Caulobacterales	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
DYD3_k127_1133696_4	450851.PHZ_c1445	2.405e-156	507.0	COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,2TRPM@28211|Alphaproteobacteria,2KG7K@204458|Caulobacterales	204458|Caulobacterales	M	Barrel-sandwich domain of CusB or HlyD membrane-fusion	-	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	HlyD_D23
DYD3_k127_1133696_12	450851.PHZ_c1444	4e-66	243.0	COG1538@1|root,COG1538@2|Bacteria,1NEZC@1224|Proteobacteria,2U410@28211|Alphaproteobacteria,2KFTE@204458|Caulobacterales	204458|Caulobacterales	MU	Outer membrane efflux protein	-	-	-	ko:K15725	-	-	-	-	ko00000,ko02000	1.B.17.2.2	-	-	OEP
DYD3_k127_1133696_18	935567.JAES01000024_gene1464	6.926e-41	160.0	COG2207@1|root,COG2207@2|Bacteria,1N70D@1224|Proteobacteria,1SCZK@1236|Gammaproteobacteria,1X94Q@135614|Xanthomonadales	135614|Xanthomonadales	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
DYD3_k127_1133696_16	366602.Caul_2644	2.228e-42	175.0	2CN2H@1|root,32SG5@2|Bacteria,1N4PY@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1133696_22	1004785.AMBLS11_10320	1.093e-22	113.0	COG3000@1|root,COG3000@2|Bacteria,1QU0E@1224|Proteobacteria,1SAFX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Protein of unknown function (DUF3703)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3703
DYD3_k127_1133696_19	190650.CC_0223	2.479e-40	169.0	COG0596@1|root,COG0596@2|Bacteria,1N252@1224|Proteobacteria,2UHSE@28211|Alphaproteobacteria,2KIRM@204458|Caulobacterales	204458|Caulobacterales	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_1133696_2	279238.Saro_2142	0.0	1096.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,2K0EB@204457|Sphingomonadales	204457|Sphingomonadales	P	P-type ATPase	-	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,HMA,Hydrolase,YHS
DYD3_k127_1133696_21	1267005.KB911255_gene2548	1.061e-23	103.0	COG1937@1|root,COG1937@2|Bacteria,1N9P2@1224|Proteobacteria,2UF3F@28211|Alphaproteobacteria,3N793@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	MA20_24475	-	-	ko:K21600	-	-	-	-	ko00000,ko03000	-	-	-	Trns_repr_metal
DYD3_k127_1152266_2	1121948.AUAC01000006_gene607	2.726e-194	617.0	COG0124@1|root,COG0124@2|Bacteria,1MV2K@1224|Proteobacteria,2TSTH@28211|Alphaproteobacteria,43WB8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	histidyl-tRNA synthetase	hisS	-	6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_His
DYD3_k127_1152266_6	450851.PHZ_c0331	1.452e-160	521.0	COG0166@1|root,COG0166@2|Bacteria,1MUFP@1224|Proteobacteria,2TQKP@28211|Alphaproteobacteria,2KFKJ@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the GPI family	pgi	-	5.3.1.9	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	M00001,M00004,M00114	R02739,R02740,R03321	RC00376,RC00563	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGI
DYD3_k127_1152266_10	450851.PHZ_c0127	5.257e-90	307.0	COG0253@1|root,COG0253@2|Bacteria,1MWDH@1224|Proteobacteria,2TUF2@28211|Alphaproteobacteria,2KFK1@204458|Caulobacterales	204458|Caulobacterales	E	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	dapF	-	5.1.1.7	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00527	R02735	RC00302	ko00000,ko00001,ko00002,ko01000	-	-	-	DAP_epimerase
DYD3_k127_1152266_1	1105367.CG50_09010	2.127e-205	647.0	COG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,2TSZ0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	COG0402 Cytosine deaminase and related metal-dependent hydrolases	atzB	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1
DYD3_k127_1152266_12	342610.Patl_0837	9.34e-52	195.0	COG0657@1|root,COG0657@2|Bacteria	2|Bacteria	I	acetylesterase activity	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3,Peptidase_S9
DYD3_k127_1152266_5	1449351.RISW2_01300	2.225e-178	570.0	COG2233@1|root,COG2233@2|Bacteria,1MUN9@1224|Proteobacteria,2TR25@28211|Alphaproteobacteria,4KKVS@93682|Roseivivax	28211|Alphaproteobacteria	F	Permease family	-	-	-	ko:K03458	-	-	-	-	ko00000	2.A.40	-	-	Xan_ur_permease
DYD3_k127_1152266_4	314260.PB2503_11554	1.578e-179	582.0	COG2252@1|root,COG2252@2|Bacteria,1MUV0@1224|Proteobacteria,2TRC0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PFAM Xanthine uracil vitamin C permease	purP	-	-	ko:K06901	-	-	-	-	ko00000,ko02000	2.A.1.40	-	-	Xan_ur_permease
DYD3_k127_1152266_13	1229205.BUPH_00481	1.671e-41	168.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2VPY1@28216|Betaproteobacteria,1K224@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1152266_0	1192759.AKIB01000026_gene2123	0.0	1040.0	COG0551@1|root,COG0551@2|Bacteria,1NU8S@1224|Proteobacteria,2TWWM@28211|Alphaproteobacteria,2K3KC@204457|Sphingomonadales	204457|Sphingomonadales	L	Protein of unknown function (DUF1587)	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt3,PSD2,PSD3,PSD4,PSD5
DYD3_k127_1152266_3	1192759.AKIB01000026_gene2124	3.852e-180	588.0	COG2960@1|root,COG2960@2|Bacteria,1Q61Y@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_1152266_9	1192759.AKIB01000026_gene2125	4.224e-108	366.0	COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,2UA2F@28211|Alphaproteobacteria,2K9VJ@204457|Sphingomonadales	204457|Sphingomonadales	S	Ankyrin repeat	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2
DYD3_k127_1152266_8	1449049.JONW01000005_gene1117	1.609e-123	415.0	COG1816@1|root,COG1816@2|Bacteria,1R6Q8@1224|Proteobacteria,2U0BN@28211|Alphaproteobacteria,2KIAD@204458|Caulobacterales	204458|Caulobacterales	F	Adenosine/AMP deaminase	-	-	3.5.4.4	ko:K01488	ko00230,ko01100,ko05340,map00230,map01100,map05340	-	R01560,R02556	RC00477	ko00000,ko00001,ko01000	-	-	-	A_deaminase
DYD3_k127_1152266_11	279238.Saro_1865	2.735e-63	224.0	COG0346@1|root,COG0346@2|Bacteria,1MWHG@1224|Proteobacteria,2U1WR@28211|Alphaproteobacteria,2K70M@204457|Sphingomonadales	204457|Sphingomonadales	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase_4
DYD3_k127_1152266_14	471853.Bcav_3697	4.073e-28	116.0	COG0604@1|root,COG0604@2|Bacteria,2GIS3@201174|Actinobacteria	201174|Actinobacteria	C	alcohol dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N_2
DYD3_k127_1171683_10	1161401.ASJA01000011_gene1505	6.364e-44	170.0	COG2992@1|root,COG3263@1|root,COG2992@2|Bacteria,COG3263@2|Bacteria,1MVKV@1224|Proteobacteria,2TSZJ@28211|Alphaproteobacteria,4414B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Sodium/hydrogen exchanger family	cvrA	-	-	ko:K11105	-	-	-	-	ko00000,ko02000	2.A.36.6	-	-	CorC_HlyC,Na_H_Exchanger
DYD3_k127_1171683_9	113395.AXAI01000002_gene5580	7.95e-57	218.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JR0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,Response_reg
DYD3_k127_1171683_5	1131813.AQVT01000001_gene3529	8.606e-109	372.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,1JS7E@119045|Methylobacteriaceae	28211|Alphaproteobacteria	NT	PFAM histidine kinase HAMP region domain protein	-	-	-	-	-	-	-	-	-	-	-	-	4HB_MCP_1,HAMP,MCPsignal
DYD3_k127_1171683_2	1161401.ASJA01000011_gene1504	6.681e-139	459.0	COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,2TR2Q@28211|Alphaproteobacteria,43WDM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	ABC transporter, ATP-binding protein	yadG	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_1171683_13	314254.OA2633_11555	4.602e-25	106.0	COG4391@1|root,COG4391@2|Bacteria,1N7F4@1224|Proteobacteria,2UFVF@28211|Alphaproteobacteria,43YN0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	zf-CHCC
DYD3_k127_1171683_1	1122613.ATUP01000001_gene1699	3.422e-147	486.0	COG0471@1|root,COG0471@2|Bacteria,1MUSA@1224|Proteobacteria,2TU0C@28211|Alphaproteobacteria,43WQ1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG0471 Di- and tricarboxylate transporters	-	-	-	ko:K03319,ko:K09477,ko:K11106,ko:K14445	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.47,2.A.47.1,2.A.47.3.2,2.A.47.3.3	-	-	Na_sulph_symp
DYD3_k127_1171683_14	290397.Adeh_2222	7.46e-21	108.0	COG1977@1|root,COG1977@2|Bacteria,1N6RG@1224|Proteobacteria,43BB8@68525|delta/epsilon subdivisions,2X6QE@28221|Deltaproteobacteria,2YVUR@29|Myxococcales	28221|Deltaproteobacteria	H	ThiS family	-	-	-	-	-	-	-	-	-	-	-	-	ThiS
DYD3_k127_1171683_3	279714.FuraDRAFT_2520	2.428e-129	423.0	COG4447@1|root,COG4447@2|Bacteria,1ND1J@1224|Proteobacteria,2VMA5@28216|Betaproteobacteria	28216|Betaproteobacteria	S	protein related to plant photosystem II stability assembly factor	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1171683_4	633149.Bresu_0682	2.594e-126	414.0	COG0861@1|root,COG0861@2|Bacteria,1MUNR@1224|Proteobacteria,2TRRX@28211|Alphaproteobacteria,2KF04@204458|Caulobacterales	204458|Caulobacterales	P	Membrane protein TerC	-	-	-	ko:K05794	-	-	-	-	ko00000	-	-	-	TerC
DYD3_k127_1171683_8	1280953.HOC_05129	2.16e-71	254.0	COG3409@1|root,COG5480@1|root,COG3409@2|Bacteria,COG5480@2|Bacteria,1P9ZA@1224|Proteobacteria,2TSTF@28211|Alphaproteobacteria,43XAM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF1036)	MA20_21840	-	-	-	-	-	-	-	-	-	-	-	DUF1036,PG_binding_1
DYD3_k127_1171683_7	1161401.ASJA01000006_gene1901	7.67e-73	253.0	COG0218@1|root,COG0218@2|Bacteria,1MY3Z@1224|Proteobacteria,2U5E5@28211|Alphaproteobacteria,43XEX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Necessary for normal cell division and for the maintenance of normal septation	engB	-	-	ko:K03978	-	-	-	-	ko00000,ko03036	-	-	-	MMR_HSR1
DYD3_k127_1171683_0	1035191.HMPREF0185_00261	1.86e-177	574.0	COG0706@1|root,COG0706@2|Bacteria,1MV5M@1224|Proteobacteria,2TSTJ@28211|Alphaproteobacteria,2KF4R@204458|Caulobacterales	204458|Caulobacterales	U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins	yidC	-	-	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9	-	-	60KD_IMP,YidC_periplas
DYD3_k127_1171683_12	394221.Mmar10_0459	2.091e-32	141.0	COG0594@1|root,COG0594@2|Bacteria,1N6QY@1224|Proteobacteria,2UFAB@28211|Alphaproteobacteria,43YM4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	rnpA	-	3.1.26.5	ko:K03536	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Ribonuclease_P
DYD3_k127_1171683_11	1122962.AULH01000006_gene3193	6.578e-43	165.0	COG1396@1|root,COG1396@2|Bacteria,1MZ1V@1224|Proteobacteria,2UBKA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
DYD3_k127_1171683_6	1348663.KCH_35900	5.436e-81	275.0	COG0500@1|root,COG2226@2|Bacteria,2I547@201174|Actinobacteria,2M0WA@2063|Kitasatospora	201174|Actinobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_1193924_13	631454.N177_2458	5.412e-182	576.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2TR1V@28211|Alphaproteobacteria,1JPUC@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region	fdsB	-	1.6.5.3	ko:K00124,ko:K00335	ko00190,ko00630,ko00680,ko01100,ko01120,ko01200,map00190,map00630,map00680,map01100,map01120,map01200	M00144	R00519,R11945	RC00061,RC02796	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_51K,NADH_4Fe-4S,SLBB
DYD3_k127_1193924_0	1279038.KB907341_gene1764	0.0	1500.0	COG3383@1|root,COG3383@2|Bacteria,1QTZB@1224|Proteobacteria,2TVZI@28211|Alphaproteobacteria,2JQ15@204441|Rhodospirillales	204441|Rhodospirillales	C	Formate dehydrogenase subunit alpha	-	-	1.17.1.9	ko:K00123	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	Fer2_4,Fer4,Fer4_6,Fer4_7,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,NADH-G_4Fe-4S_3
DYD3_k127_1193924_21	1121033.AUCF01000001_gene2494	1.198e-67	240.0	COG1526@1|root,COG1526@2|Bacteria,1NRU0@1224|Proteobacteria,2TUD2@28211|Alphaproteobacteria,2JS7F@204441|Rhodospirillales	204441|Rhodospirillales	C	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH	fdhD	-	-	ko:K02379	-	-	-	-	ko00000	-	-	-	FdhD-NarQ
DYD3_k127_1193924_34	1417296.U879_03280	1.823e-17	88.0	2E4CR@1|root,32Z86@2|Bacteria,1N7UZ@1224|Proteobacteria,2UF9N@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	formate dehydrogenase	fdsD	-	1.17.1.9	ko:K00126	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	FdsD
DYD3_k127_1193924_25	935840.JAEQ01000003_gene278	4.974e-56	211.0	COG0685@1|root,COG0685@2|Bacteria,1MVWT@1224|Proteobacteria,2TTSF@28211|Alphaproteobacteria,43KAG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	COG0685 5,10-methylenetetrahydrofolate reductase	-	-	1.5.1.20	ko:K00297	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523	M00377	R01224,R07168	RC00081	ko00000,ko00001,ko00002,ko01000	-	-	-	MTHFR
DYD3_k127_1193924_12	991905.SL003B_2672	8.578e-190	604.0	COG0742@1|root,COG0742@2|Bacteria,1MW6A@1224|Proteobacteria,2TQNI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	ribosomal rna small subunit methyltransferase	MA20_07810	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1193924_2	1123501.KB902279_gene615	0.0	1007.0	COG2759@1|root,COG2759@2|Bacteria,1MUR8@1224|Proteobacteria,2TRMM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Belongs to the formate--tetrahydrofolate ligase family	fhs	-	6.3.4.3	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R00943	RC00026,RC00111	ko00000,ko00001,ko00002,ko01000	-	-	-	FTHFS
DYD3_k127_1193924_40	1231392.OCGS_0400	6.826e-06	56.0	COG3247@1|root,COG3247@2|Bacteria,1RI2U@1224|Proteobacteria,2UB3I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Short repeat of unknown function (DUF308)	-	-	-	-	-	-	-	-	-	-	-	-	DUF308
DYD3_k127_1193924_14	1280947.HY30_11165	5.478e-159	516.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,43XAH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG1012 NAD-dependent aldehyde dehydrogenases	-	-	1.2.1.16,1.2.1.20,1.2.1.79	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	M00027	R00713,R00714,R02401	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_1193924_18	394221.Mmar10_2672	2.103e-83	287.0	COG0837@1|root,COG0837@2|Bacteria,1MVFI@1224|Proteobacteria,2U0CA@28211|Alphaproteobacteria,43XW8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Glucokinase	glk	-	2.7.1.2	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R01600,R01786	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucokinase,Glyco_hydro_1
DYD3_k127_1193924_32	1166018.FAES_4789	1.754e-18	91.0	COG2199@1|root,COG3706@2|Bacteria,4PMHM@976|Bacteroidetes,47YRD@768503|Cytophagia	976|Bacteroidetes	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_1193924_30	649831.L083_1337	1.563e-22	104.0	COG0745@1|root,COG0745@2|Bacteria,2I2VM@201174|Actinobacteria,4DMU0@85008|Micromonosporales	201174|Actinobacteria	KT	cheY-homologous receiver domain	-	-	-	ko:K02485	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg
DYD3_k127_1193924_38	867903.ThesuDRAFT_01767	1.993e-12	73.0	COG0745@1|root,COG0745@2|Bacteria,1TS81@1239|Firmicutes,248XH@186801|Clostridia,3WD8H@538999|Clostridiales incertae sedis	186801|Clostridia	K	Transcriptional regulatory protein, C terminal	-	-	-	ko:K02483,ko:K07669	ko02020,map02020	M00460	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1193924_24	1121438.JNJA01000008_gene3997	1.956e-57	214.0	COG4251@1|root,COG4251@2|Bacteria,1NSQ1@1224|Proteobacteria,42RAK@68525|delta/epsilon subdivisions,2WMP9@28221|Deltaproteobacteria,2MB8A@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA,PAS_4
DYD3_k127_1193924_1	1120999.JONM01000003_gene2615	0.0	1101.0	COG0506@1|root,COG4230@1|root,COG0506@2|Bacteria,COG4230@2|Bacteria,1MV93@1224|Proteobacteria,2VITK@28216|Betaproteobacteria,2KPMR@206351|Neisseriales	206351|Neisseriales	C	Oxidizes proline to glutamate for use as a carbon and nitrogen source	putA	-	1.2.1.88,1.5.5.2	ko:K13821	ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130	-	R00245,R00707,R00708,R01253,R04444,R04445,R05051	RC00080,RC00083,RC00216,RC00242,RC00255	ko00000,ko00001,ko01000,ko03000	-	-	-	Aldedh,Pro_dh,Pro_dh-DNA_bdg
DYD3_k127_1193924_39	338969.Rfer_1231	1.358e-07	65.0	COG0457@1|root,COG0457@2|Bacteria,1N7YB@1224|Proteobacteria	1224|Proteobacteria	F	TIR domain	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_1193924_11	1121861.KB899916_gene1707	7.869e-193	614.0	COG1509@1|root,COG1509@2|Bacteria,1MUPJ@1224|Proteobacteria,2TT31@28211|Alphaproteobacteria,2JPK9@204441|Rhodospirillales	204441|Rhodospirillales	E	lysine 2,3-aminomutase	-	-	-	-	-	-	-	-	-	-	-	-	Radical_SAM
DYD3_k127_1193924_16	439496.RBY4I_1281	5.793e-98	331.0	COG1181@1|root,COG1181@2|Bacteria,1MX3I@1224|Proteobacteria,2VG92@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	D-ala D-ala ligase C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Dala_Dala_lig_C
DYD3_k127_1193924_20	690850.Desaf_2082	2.677e-73	259.0	COG1181@1|root,COG1181@2|Bacteria,1N4F5@1224|Proteobacteria,42NYM@68525|delta/epsilon subdivisions,2WKTX@28221|Deltaproteobacteria,2M925@213115|Desulfovibrionales	28221|Deltaproteobacteria	M	Belongs to the D-alanine--D-alanine ligase family	ddlB1	-	6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	-	R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C
DYD3_k127_1193924_4	999547.KI421500_gene3579	2.38e-274	868.0	COG0123@1|root,COG0454@1|root,COG0123@2|Bacteria,COG0456@2|Bacteria,1MU7P@1224|Proteobacteria,2TRRH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	BQ	COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein	aphA	-	-	-	-	-	-	-	-	-	-	-	Hist_deacetyl
DYD3_k127_1193924_37	1348657.M622_00210	8.396e-14	82.0	COG1309@1|root,COG1309@2|Bacteria,1RDIM@1224|Proteobacteria,2VJQ5@28216|Betaproteobacteria,2KV0G@206389|Rhodocyclales	206389|Rhodocyclales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_1193924_33	929712.KI912613_gene3791	1.522e-17	86.0	29QDQ@1|root,30BD0@2|Bacteria,2GVJB@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1193924_5	330084.JNYZ01000004_gene390	1.004e-234	750.0	COG0145@1|root,COG0145@2|Bacteria,2IAQ2@201174|Actinobacteria,4E9IJ@85010|Pseudonocardiales	201174|Actinobacteria	EQ	Hydantoinase/oxoprolinase	-	-	3.5.2.14	ko:K01473	ko00330,ko01100,map00330,map01100	-	R03187	RC00632	ko00000,ko00001,ko01000	-	-	-	Hydant_A_N,Hydantoinase_A
DYD3_k127_1193924_6	1068978.AMETH_1825	2.993e-221	716.0	COG0146@1|root,COG0146@2|Bacteria,2I9E7@201174|Actinobacteria,4E89Z@85010|Pseudonocardiales	201174|Actinobacteria	EQ	PFAM Hydantoinase B oxoprolinase	-	-	3.5.2.14	ko:K01474	ko00330,ko01100,map00330,map01100	-	R03187	RC00632	ko00000,ko00001,ko01000	-	-	-	Hydantoinase_B
DYD3_k127_1193924_9	702113.PP1Y_AT11456	3.18e-208	659.0	COG0277@1|root,COG0277@2|Bacteria,1MY08@1224|Proteobacteria,2UQZG@28211|Alphaproteobacteria,2K8TP@204457|Sphingomonadales	204457|Sphingomonadales	C	FAD linked oxidases, C-terminal domain	-	-	1.17.99.1	ko:K05797	ko00623,ko01100,ko01120,map00623,map01100,map01120	-	R02675,R11194	RC00769	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_1193924_36	627192.SLG_11380	1.045e-14	88.0	COG2010@1|root,COG2010@2|Bacteria	2|Bacteria	C	Cytochrome c	-	-	-	ko:K00406	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002	3.D.4.3	-	-	Cytochrome_CBB3
DYD3_k127_1193924_8	627192.SLG_09500	1.908e-212	674.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,2K0FF@204457|Sphingomonadales	204457|Sphingomonadales	E	Belongs to the GMC oxidoreductase family	-	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_1193924_26	702113.PP1Y_AT11439	1.689e-55	199.0	29XWP@1|root,30JP4@2|Bacteria,1N409@1224|Proteobacteria,2UQGI@28211|Alphaproteobacteria,2K94F@204457|Sphingomonadales	204457|Sphingomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_1193924_35	555793.WSK_4255	2.242e-16	89.0	2FC15@1|root,34458@2|Bacteria,1P1GZ@1224|Proteobacteria,2UVSN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1193924_31	1121106.JQKB01000007_gene1101	7.46e-21	94.0	2EA3Y@1|root,3348X@2|Bacteria,1N7DC@1224|Proteobacteria,2UF9X@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2188)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2188
DYD3_k127_1193924_10	1522072.IL54_2427	3.321e-194	621.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,2K1ZD@204457|Sphingomonadales	204457|Sphingomonadales	C	belongs to the aldehyde dehydrogenase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldedh
DYD3_k127_1193924_17	710111.FraQA3DRAFT_2512	1.066e-95	323.0	COG0702@1|root,COG0702@2|Bacteria,2GJB8@201174|Actinobacteria	201174|Actinobacteria	GM	PFAM NmrA family protein	-	-	1.6.5.2	ko:K19267	ko00130,ko01110,map00130,map01110	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	NAD_binding_10,NmrA
DYD3_k127_1193924_19	452662.SJA_C2-01130	1.156e-75	274.0	COG0477@1|root,COG2814@2|Bacteria,1MVQQ@1224|Proteobacteria,2TRBF@28211|Alphaproteobacteria,2K261@204457|Sphingomonadales	204457|Sphingomonadales	EGP	Major Facilitator	-	-	-	ko:K08195	-	-	-	-	ko00000,ko02000	2.A.1.15	-	-	MFS_1
DYD3_k127_1193924_23	710111.FraQA3DRAFT_2514	2.442e-67	243.0	2DMP1@1|root,32SS8@2|Bacteria,2IJVX@201174|Actinobacteria	201174|Actinobacteria	S	Protein of unknown function (DUF3237)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3237
DYD3_k127_1193924_29	627192.SLG_36710	1.703e-32	133.0	COG4319@1|root,COG4319@2|Bacteria,1QUR3@1224|Proteobacteria,2TW48@28211|Alphaproteobacteria,2K85Y@204457|Sphingomonadales	204457|Sphingomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_1193924_3	279238.Saro_1868	1.592e-309	972.0	COG1629@1|root,COG4773@1|root,COG1629@2|Bacteria,COG4773@2|Bacteria,1R8HM@1224|Proteobacteria,2U3RH@28211|Alphaproteobacteria,2KCYK@204457|Sphingomonadales	204457|Sphingomonadales	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_1193924_22	941449.dsx2_3134	1.856e-67	235.0	COG2080@1|root,COG2080@2|Bacteria,1N1KQ@1224|Proteobacteria,42UD3@68525|delta/epsilon subdivisions,2WPH9@28221|Deltaproteobacteria,2M9N0@213115|Desulfovibrionales	28221|Deltaproteobacteria	C	2Fe-2S -binding	-	-	-	-	-	-	-	-	-	-	-	-	Fer2,Fer2_2
DYD3_k127_1193924_7	644968.DFW101_0023	1.027e-220	709.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,42MER@68525|delta/epsilon subdivisions,2WIYV@28221|Deltaproteobacteria,2MAGR@213115|Desulfovibrionales	28221|Deltaproteobacteria	C	xanthine dehydrogenase a b hammerhead	-	-	1.17.1.4	ko:K11177	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2,Fer2_2
DYD3_k127_1193924_15	596152.DesU5LDRAFT_2640	1.344e-120	395.0	COG1319@1|root,COG1319@2|Bacteria,1MVJS@1224|Proteobacteria,42RX4@68525|delta/epsilon subdivisions,2WNBJ@28221|Deltaproteobacteria,2M9BS@213115|Desulfovibrionales	28221|Deltaproteobacteria	C	PFAM Molybdopterin dehydrogenase, FAD-binding	-	-	1.17.1.4	ko:K11178	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
DYD3_k127_1193924_27	941449.dsx2_3131	4.131e-43	165.0	COG2864@1|root,COG2864@2|Bacteria	2|Bacteria	C	formate dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
DYD3_k127_1276934_3	1207063.P24_14639	1.264e-202	665.0	COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,2TRX2@28211|Alphaproteobacteria,2JPPJ@204441|Rhodospirillales	204441|Rhodospirillales	J	Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs	rne	-	3.1.26.12	ko:K08300,ko:K08301	ko03018,map03018	M00394	-	-	ko00000,ko00001,ko00002,ko01000,ko03009,ko03019	-	-	-	RNase_E_G,S1
DYD3_k127_1276934_10	1161401.ASJA01000007_gene2016	1.218e-85	297.0	COG0860@1|root,COG0860@2|Bacteria,1MUQK@1224|Proteobacteria,2U0K2@28211|Alphaproteobacteria,43X7P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	N-acetylmuramoyl-L-alanine amidase	amiC	-	3.5.1.28	ko:K01448	ko01503,map01503	M00727	R04112	RC00064,RC00141	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036	-	-	-	AMIN,Amidase_3
DYD3_k127_1276934_0	1122613.ATUP01000001_gene226	4.575e-285	908.0	COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,2USBB@28211|Alphaproteobacteria,43WN9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Penicillin-binding protein 1A	mrcA	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	PCB_OB,Transgly,Transpeptidase
DYD3_k127_1276934_5	450851.PHZ_c1839	8.328e-162	519.0	COG1186@1|root,COG1186@2|Bacteria,1MUAW@1224|Proteobacteria,2TR9V@28211|Alphaproteobacteria,2KEZ8@204458|Caulobacterales	204458|Caulobacterales	J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA	prfB	-	-	ko:K02836	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD3_k127_1276934_13	1479238.JQMZ01000001_gene1983	7.371e-43	163.0	COG1664@1|root,COG1664@2|Bacteria,1MZN0@1224|Proteobacteria,2U5DW@28211|Alphaproteobacteria,43Y3U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG1664 Integral membrane protein CcmA involved in cell shape determination	-	-	-	-	-	-	-	-	-	-	-	-	Bactofilin
DYD3_k127_1276934_8	394221.Mmar10_1304	1.546e-108	365.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2TQZE@28211|Alphaproteobacteria,43WYZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0739 Membrane proteins related to metalloendopeptidases	MA20_30780	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_1276934_11	314254.OA2633_03266	2.21e-59	212.0	COG1225@1|root,COG1225@2|Bacteria,1RD4R@1224|Proteobacteria,2U6Z9@28211|Alphaproteobacteria,43XNH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Bacterioferritin comigratory protein	bcp	-	1.11.1.15	ko:K03564	-	-	-	-	ko00000,ko01000	-	-	-	AhpC-TSA
DYD3_k127_1276934_4	394221.Mmar10_1307	1.613e-195	652.0	COG3164@1|root,COG3164@2|Bacteria,1MVDY@1224|Proteobacteria,2TSGG@28211|Alphaproteobacteria,43WVW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Protein of unknown function	MA20_30770	-	-	-	-	-	-	-	-	-	-	-	AsmA_2,DUF3971
DYD3_k127_1276934_6	1123503.KB908061_gene577	2.331e-154	513.0	COG0162@1|root,COG0162@2|Bacteria,1MVUQ@1224|Proteobacteria,2TQPA@28211|Alphaproteobacteria,2KFED@204458|Caulobacterales	204458|Caulobacterales	J	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)	-	-	-	-	-	-	-	-	-	-	-	-	S4,tRNA-synt_1b
DYD3_k127_1276934_14	627192.SLG_24210	1.178e-40	156.0	2C0PI@1|root,32VVI@2|Bacteria,1N1H7@1224|Proteobacteria,2UE1P@28211|Alphaproteobacteria,2K60G@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1276934_2	633149.Bresu_2184	1.67e-222	693.0	COG3876@1|root,COG3876@2|Bacteria,1MX3S@1224|Proteobacteria,2U1KM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1343)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1343
DYD3_k127_1276934_9	1479238.JQMZ01000001_gene1653	1.646e-95	316.0	COG2945@1|root,COG2945@2|Bacteria,1MUDY@1224|Proteobacteria,2TRMI@28211|Alphaproteobacteria,43X5G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Alpha beta	QU41_16170	-	-	ko:K07018	-	-	-	-	ko00000	-	-	-	Hydrolase_4,Peptidase_S15
DYD3_k127_1276934_12	1035191.HMPREF0185_01390	1.297e-51	186.0	COG1959@1|root,COG1959@2|Bacteria,1RDA4@1224|Proteobacteria,2U5B9@28211|Alphaproteobacteria,2KGVJ@204458|Caulobacterales	204458|Caulobacterales	K	Rrf2 family	-	-	-	ko:K13643	-	-	-	-	ko00000,ko03000	-	-	-	Rrf2
DYD3_k127_1276934_7	1479238.JQMZ01000001_gene1655	2.079e-112	383.0	COG1104@1|root,COG1104@2|Bacteria,1MU1C@1224|Proteobacteria,2TSQE@28211|Alphaproteobacteria,43WK6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes	nifS	GO:0000096,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006464,GO:0006520,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0018282,GO:0018283,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031071,GO:0031163,GO:0031974,GO:0031981,GO:0032324,GO:0034641,GO:0036211,GO:0042278,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043545,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046983,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
DYD3_k127_1276934_1	573065.Astex_2761	3.678e-246	770.0	COG0719@1|root,COG0719@2|Bacteria,1MVKY@1224|Proteobacteria,2TRU6@28211|Alphaproteobacteria,2KF2C@204458|Caulobacterales	204458|Caulobacterales	O	FeS assembly protein SufB	-	-	-	ko:K09014	-	-	-	-	ko00000	-	-	-	UPF0051
DYD3_k127_1284176_9	1292034.OR37_02607	4.845e-39	148.0	COG4957@1|root,COG4957@2|Bacteria,1RGUW@1224|Proteobacteria,2U99M@28211|Alphaproteobacteria,2KGKZ@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	ROS_MUCR
DYD3_k127_1284176_11	394221.Mmar10_0894	1.097e-28	121.0	COG0593@1|root,COG0593@2|Bacteria,1N76V@1224|Proteobacteria,2UG3R@28211|Alphaproteobacteria,43YMN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	COG0593 ATPase involved in DNA replication initiation	-	-	-	-	-	-	-	-	-	-	-	-	Bac_DnaA_C
DYD3_k127_1284176_10	107636.JQNK01000009_gene2723	1.508e-32	141.0	COG0583@1|root,COG0583@2|Bacteria,1MXC9@1224|Proteobacteria,2TTTY@28211|Alphaproteobacteria,36YF4@31993|Methylocystaceae	28211|Alphaproteobacteria	K	DNA-binding transcription factor activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1284176_7	439375.Oant_2685	9.703e-47	172.0	COG2166@1|root,COG2166@2|Bacteria,1RI8F@1224|Proteobacteria,2U9A2@28211|Alphaproteobacteria,1J2VM@118882|Brucellaceae	28211|Alphaproteobacteria	S	Fe-S metabolism associated domain	sufE	-	-	ko:K02426	-	-	-	-	ko00000	-	-	-	SufE
DYD3_k127_1284176_8	1207058.L53_02125	2.608e-42	169.0	28NKZ@1|root,32ZMF@2|Bacteria,1NCCR@1224|Proteobacteria,2UFA7@28211|Alphaproteobacteria,43XM0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1284176_6	1161401.ASJA01000005_gene2521	3.608e-69	256.0	COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TSRP@28211|Alphaproteobacteria,43X75@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	signal transduction histidine kinase	divJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.13.3	ko:K07716,ko:K11357	ko02020,ko04112,map02020,map04112	M00511	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_3,PAS_4
DYD3_k127_1284176_13	394221.Mmar10_0905	4.606e-23	111.0	2DZY3@1|root,32VMW@2|Bacteria,1N5FG@1224|Proteobacteria,2UEDV@28211|Alphaproteobacteria,43YUV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1284176_12	1161401.ASJA01000005_gene2524	2.586e-26	113.0	COG5447@1|root,COG5447@2|Bacteria,1N1KU@1224|Proteobacteria,2UCBQ@28211|Alphaproteobacteria,43YHT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1491)	MA20_15690	-	-	-	-	-	-	-	-	-	-	-	DUF1491
DYD3_k127_1284176_16	394221.Mmar10_0908	1.358e-15	85.0	2E4EG@1|root,32Z9Q@2|Bacteria,1NCFT@1224|Proteobacteria,2UGWK@28211|Alphaproteobacteria,43YY9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1284176_0	1479238.JQMZ01000001_gene2079	1.988e-231	727.0	COG4108@1|root,COG4108@2|Bacteria,1MU7X@1224|Proteobacteria,2TRP5@28211|Alphaproteobacteria,43WSS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	prfC	-	-	ko:K02837	-	-	-	-	ko00000,ko03012	-	-	-	GTP_EFTU,GTP_EFTU_D2,RF3_C
DYD3_k127_1284176_5	1122613.ATUP01000001_gene2319	6.261e-74	262.0	COG5330@1|root,COG5330@2|Bacteria,1R3VY@1224|Proteobacteria,2TUQ8@28211|Alphaproteobacteria,43XXH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_1284176_1	1161401.ASJA01000001_gene418	2.225e-180	585.0	COG0744@1|root,COG0744@2|Bacteria,1QTST@1224|Proteobacteria,2TQQ8@28211|Alphaproteobacteria,43WCX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0744 Membrane carboxypeptidase (penicillin-binding protein)	pbp	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly,Transpeptidase
DYD3_k127_1284176_2	1479238.JQMZ01000001_gene1507	3.433e-168	554.0	COG4206@1|root,COG4206@2|Bacteria,1QUGQ@1224|Proteobacteria,2TXTZ@28211|Alphaproteobacteria,440TH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_1284176_14	1463917.JODC01000020_gene9217	1.483e-20	106.0	COG1672@1|root,COG2319@1|root,COG1672@2|Bacteria,COG2319@2|Bacteria,2GJN3@201174|Actinobacteria	201174|Actinobacteria	F	WD-40 repeat	-	-	-	-	-	-	-	-	-	-	-	-	AAA_16,TIR_2,WD40
DYD3_k127_1284176_4	1479238.JQMZ01000001_gene1159	2.14e-135	447.0	COG5323@1|root,COG5323@2|Bacteria,1MW8S@1224|Proteobacteria,2TREI@28211|Alphaproteobacteria,43WIM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Terminase RNaseH-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6,Terminase_6C
DYD3_k127_1284176_3	1161401.ASJA01000015_gene927	2.398e-148	479.0	COG4695@1|root,COG4695@2|Bacteria,1MUP5@1224|Proteobacteria,2TT33@28211|Alphaproteobacteria,43WK7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	phage portal protein, HK97	gp34	-	-	-	-	-	-	-	-	-	-	-	Phage_portal
DYD3_k127_1284176_17	1122613.ATUP01000001_gene2327	7.934e-12	77.0	2EAII@1|root,334MJ@2|Bacteria,1N95E@1224|Proteobacteria,2UJ7W@28211|Alphaproteobacteria,43YTD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1284176_15	1479238.JQMZ01000001_gene1162	5.874e-20	96.0	COG3740@1|root,COG3740@2|Bacteria,1N2D8@1224|Proteobacteria,2UD3U@28211|Alphaproteobacteria,440YT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Caudovirus prohead serine protease	-	-	-	ko:K06904	-	-	-	-	ko00000	-	-	-	Peptidase_S78
DYD3_k127_129529_25	1035191.HMPREF0185_02703	1.045e-30	123.0	COG1886@1|root,COG1886@2|Bacteria,1N1JC@1224|Proteobacteria,2UC3S@28211|Alphaproteobacteria,2KH20@204458|Caulobacterales	204458|Caulobacterales	NU	PFAM surface presentation of antigens (SPOA) protein	-	-	-	ko:K02417	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FliMN_C
DYD3_k127_129529_9	190650.CC_2176	1.731e-90	303.0	COG0321@1|root,COG0321@2|Bacteria,1MU6A@1224|Proteobacteria,2TRXJ@28211|Alphaproteobacteria,2KFEP@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate	lipB	-	2.3.1.181	ko:K03801	ko00785,ko01100,map00785,map01100	-	R07766,R07769	RC00039,RC00992,RC02867	ko00000,ko00001,ko01000	-	-	-	BPL_LplA_LipB
DYD3_k127_129529_31	1449049.JONW01000005_gene961	5.951e-12	72.0	COG3152@1|root,COG3152@2|Bacteria,1NA5R@1224|Proteobacteria,2UFG5@28211|Alphaproteobacteria,2KH9J@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF805)	-	-	-	-	-	-	-	-	-	-	-	-	DUF805
DYD3_k127_129529_26	1280946.HY29_02720	2.057e-25	112.0	COG3152@1|root,COG3152@2|Bacteria,1NDNG@1224|Proteobacteria,2TT9F@28211|Alphaproteobacteria,43YRM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF805)	-	-	-	-	-	-	-	-	-	-	-	-	DUF805
DYD3_k127_129529_15	1280950.HJO_10339	7.495e-62	217.0	COG0789@1|root,COG0789@2|Bacteria,1RH2U@1224|Proteobacteria,2U73A@28211|Alphaproteobacteria,43Y1V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	redox-sensitive transcriptional activator SoxR	soxR	-	-	ko:K13639	-	-	-	-	ko00000,ko03000	-	-	-	MerR,MerR-DNA-bind,MerR_1
DYD3_k127_129529_21	1280947.HY30_17490	3.274e-40	158.0	COG0346@1|root,COG0346@2|Bacteria,1N0XB@1224|Proteobacteria,2UD3M@28211|Alphaproteobacteria,43Y67@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG0346 Lactoylglutathione lyase and related lyases	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase,Glyoxalase_4
DYD3_k127_129529_12	314254.OA2633_01826	9.04e-82	280.0	COG1381@1|root,COG1381@2|Bacteria,1MVEJ@1224|Proteobacteria,2TTYW@28211|Alphaproteobacteria,43XEW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Involved in DNA repair and RecF pathway recombination	recO	-	-	ko:K03584	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecO_C,RecO_N
DYD3_k127_129529_4	1123503.KB908059_gene271	7.758e-126	411.0	COG1159@1|root,COG1159@2|Bacteria,1MUKT@1224|Proteobacteria,2TSHM@28211|Alphaproteobacteria,2KFWU@204458|Caulobacterales	204458|Caulobacterales	S	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism	era	-	-	ko:K03595	-	-	-	-	ko00000,ko03009,ko03029	-	-	-	KH_2,MMR_HSR1
DYD3_k127_129529_14	1161401.ASJA01000009_gene1818	4.683e-67	243.0	COG0571@1|root,COG0571@2|Bacteria,1MUQ6@1224|Proteobacteria,2TTIA@28211|Alphaproteobacteria,43XRE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	rnc	GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363	3.1.26.3	ko:K03685	ko03008,ko05205,map03008,map05205	-	-	-	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	-	-	-	Ribonucleas_3_3,dsrm
DYD3_k127_129529_17	1411123.JQNH01000001_gene1199	3.652e-54	208.0	COG0681@1|root,COG0681@2|Bacteria,1MXUF@1224|Proteobacteria,2TR9N@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	Belongs to the peptidase S26 family	lepB	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24,Peptidase_S26
DYD3_k127_129529_18	935840.JAEQ01000004_gene477	9.39e-54	196.0	COG0736@1|root,COG0736@2|Bacteria,1MZBF@1224|Proteobacteria,2U77S@28211|Alphaproteobacteria,43JYR@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	I	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein	acpS	-	2.7.8.7	ko:K00997	ko00770,map00770	-	R01625	RC00002	ko00000,ko00001,ko01000	-	-	-	ACPS
DYD3_k127_129529_8	1280954.HPO_11434	1.39e-99	340.0	COG0854@1|root,COG0854@2|Bacteria,1MU9W@1224|Proteobacteria,2TTTF@28211|Alphaproteobacteria,43WWI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate	pdxJ	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617	2.6.99.2	ko:K03474	ko00750,ko01100,map00750,map01100	M00124	R05838	RC01476	ko00000,ko00001,ko00002,ko01000	-	-	-	PdxJ
DYD3_k127_129529_11	1336243.JAEA01000005_gene1406	9.66e-83	279.0	COG0461@1|root,COG0461@2|Bacteria,1RIC5@1224|Proteobacteria,2TUX2@28211|Alphaproteobacteria,1JT3K@119045|Methylobacteriaceae	28211|Alphaproteobacteria	F	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)	pyrE	-	2.4.2.10	ko:K00762	ko00240,ko01100,map00240,map01100	M00051	R01870	RC00611	ko00000,ko00001,ko00002,ko01000	-	-	-	Pribosyltran
DYD3_k127_129529_0	314254.OA2633_01796	8.386e-291	914.0	COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,2TQNY@28211|Alphaproteobacteria,43WCK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KT	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance	spoT	-	2.7.6.5,3.1.7.2	ko:K00951,ko:K01139	ko00230,map00230	-	R00336,R00429	RC00002,RC00078	ko00000,ko00001,ko01000,ko03009	-	-	-	ACT_4,HD_4,RelA_SpoT,TGS
DYD3_k127_129529_23	1479238.JQMZ01000001_gene1685	3.245e-37	143.0	COG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,2U9BQ@28211|Alphaproteobacteria,43Y2J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	rpoZ	-	2.7.7.6	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb6
DYD3_k127_129529_24	247633.GP2143_17796	1.849e-36	151.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,1ST6N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_129529_3	1380394.JADL01000009_gene3209	2.11e-174	571.0	COG2303@1|root,COG2303@2|Bacteria,1MU3F@1224|Proteobacteria,2TT3C@28211|Alphaproteobacteria,2JRMB@204441|Rhodospirillales	204441|Rhodospirillales	E	GMC oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_129529_29	675812.VHA_002014	5.229e-16	90.0	2BXMA@1|root,2ZBQ1@2|Bacteria,1MXZ1@1224|Proteobacteria,1SG37@1236|Gammaproteobacteria,1Y13B@135623|Vibrionales	135623|Vibrionales	S	(twin-arginine translocation) pathway signal	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_129529_22	1161401.ASJA01000009_gene1825	1.454e-38	150.0	COG0801@1|root,COG0801@2|Bacteria,1MZH8@1224|Proteobacteria,2U8D6@28211|Alphaproteobacteria,43YI5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase	folK	-	2.7.6.3,4.1.2.25	ko:K00950,ko:K13940	ko00790,ko01100,map00790,map01100	M00126,M00841	R03503,R03504	RC00002,RC00017,RC00721,RC00943	ko00000,ko00001,ko00002,ko01000	-	-	-	HPPK
DYD3_k127_129529_13	1161401.ASJA01000009_gene1826	2.064e-78	276.0	COG1432@1|root,COG1432@2|Bacteria,1MUAE@1224|Proteobacteria,2TU5M@28211|Alphaproteobacteria,43XFQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	NYN domain	MA20_36560	-	-	-	-	-	-	-	-	-	-	-	NYN
DYD3_k127_129529_10	1123503.KB908059_gene262	6.215e-85	286.0	COG1573@1|root,COG1573@2|Bacteria,1MW91@1224|Proteobacteria,2TSUP@28211|Alphaproteobacteria,2KG7E@204458|Caulobacterales	204458|Caulobacterales	L	uracil-DNA glycosylase	-	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_129529_19	1120956.JHZK01000001_gene3347	3.129e-52	201.0	COG0691@1|root,COG0691@2|Bacteria,1RDFP@1224|Proteobacteria,2U71I@28211|Alphaproteobacteria,1JNX5@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene	smpB	-	-	ko:K03664	-	-	-	-	ko00000	-	-	-	SmpB
DYD3_k127_129529_6	1123072.AUDH01000006_gene3309	4.597e-109	370.0	COG0329@1|root,COG0329@2|Bacteria,1MUCM@1224|Proteobacteria,2TR5W@28211|Alphaproteobacteria,2JPJS@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)	dapA	-	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
DYD3_k127_129529_2	394221.Mmar10_1584	9.59e-184	596.0	COG0741@1|root,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2TRDB@28211|Alphaproteobacteria,43WYM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	slt	-	-	ko:K08309	-	-	-	-	ko00000,ko01000,ko01011	-	GH23	-	SLT
DYD3_k127_129529_20	1168059.KB899087_gene2243	6.275e-41	156.0	COG0717@1|root,COG0717@2|Bacteria,1PUSA@1224|Proteobacteria,2V6AV@28211|Alphaproteobacteria,3F0CT@335928|Xanthobacteraceae	28211|Alphaproteobacteria	F	dUTPase	-	-	3.5.4.13	ko:K01494	ko00240,ko01100,map00240,map01100	M00053	R00568,R02325	RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	dUTPase
DYD3_k127_129529_30	1297569.MESS2_1300008	3.77e-12	70.0	COG0717@1|root,COG0717@2|Bacteria	2|Bacteria	F	dUTP biosynthetic process	-	-	3.5.4.13	ko:K01494	ko00240,ko01100,map00240,map01100	M00053	R00568,R02325	RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	DCD,dUTPase
DYD3_k127_129529_5	504832.OCAR_5347	1.354e-109	363.0	COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2TQN9@28211|Alphaproteobacteria,3JQZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	tdcB	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006520,GO:0006563,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016841,GO:0016853,GO:0016854,GO:0016855,GO:0017144,GO:0018249,GO:0019538,GO:0019752,GO:0019842,GO:0030170,GO:0030378,GO:0030848,GO:0036094,GO:0036211,GO:0036361,GO:0042219,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046416,GO:0046437,GO:0046872,GO:0047661,GO:0048037,GO:0050662,GO:0070178,GO:0070179,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
DYD3_k127_129529_1	582402.Hbal_0598	3.909e-244	773.0	COG1164@1|root,COG1164@2|Bacteria,1MWYN@1224|Proteobacteria,2TR6R@28211|Alphaproteobacteria,43WG4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Angiotensin-converting enzyme	-	-	3.4.15.1	ko:K01283	ko04614,ko04924,ko05142,ko05410,map04614,map04924,map05142,map05410	-	-	-	ko00000,ko00001,ko01000,ko01002,ko04090,ko04147	-	-	-	Peptidase_M2
DYD3_k127_129529_28	65093.PCC7418_3205	3.215e-23	100.0	COG4634@1|root,COG4634@2|Bacteria,1G79I@1117|Cyanobacteria	1117|Cyanobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Mut7-C
DYD3_k127_129529_27	909663.KI867150_gene2754	2.587e-24	106.0	COG2442@1|root,COG2442@2|Bacteria,1NH1S@1224|Proteobacteria,42X0V@68525|delta/epsilon subdivisions,2WRHP@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	Protein of unknown function (DUF433)	-	-	-	-	-	-	-	-	-	-	-	-	DUF433
DYD3_k127_129529_7	1379270.AUXF01000001_gene2129	2.855e-102	348.0	COG1304@1|root,COG1304@2|Bacteria,1ZUNQ@142182|Gemmatimonadetes	2|Bacteria	C	FMN-dependent dehydrogenase	-	-	1.1.3.15,1.1.3.46	ko:K00104,ko:K16422	ko00261,ko00630,ko01055,ko01100,ko01110,ko01120,ko01130,map00261,map00630,map01055,map01100,map01110,map01120,map01130	-	R00475,R06633	RC00042,RC00240	ko00000,ko00001,ko01000	-	-	-	FMN_dh
DYD3_k127_129529_16	471857.Svir_20370	1.088e-54	203.0	COG4188@1|root,COG4188@2|Bacteria,2GMYW@201174|Actinobacteria,4E02G@85010|Pseudonocardiales	201174|Actinobacteria	S	dienelactone hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	CBM_2
DYD3_k127_129593_0	314285.KT71_05702	5.94e-81	276.0	COG0730@1|root,COG0730@2|Bacteria,1MXNM@1224|Proteobacteria,1SXIG@1236|Gammaproteobacteria,1J7MC@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	Sulfite exporter TauE/SafE	-	-	-	-	-	-	-	-	-	-	-	-	TauE
DYD3_k127_129593_1	1123503.KB908056_gene1569	5.127e-37	157.0	COG1238@1|root,COG1238@2|Bacteria,1NG46@1224|Proteobacteria	1224|Proteobacteria	I	metal cluster binding	-	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD3_k127_1315159_1	1280952.HJA_17465	4.693e-125	421.0	COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,2TR10@28211|Alphaproteobacteria,43WAP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Electron transfer flavoprotein	etfA	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575	-	ko:K03522	-	-	-	-	ko00000,ko04147	-	-	-	ETF,ETF_alpha
DYD3_k127_1315159_3	864069.MicloDRAFT_00038060	2.962e-116	380.0	COG2086@1|root,COG2086@2|Bacteria,1MVH6@1224|Proteobacteria,2TR4J@28211|Alphaproteobacteria,1JSPC@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	PFAM Electron transfer flavoprotein alpha beta-subunit	etfB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114	-	ko:K03521	-	-	-	-	ko00000	-	-	-	ETF
DYD3_k127_1315159_20	1123503.KB908057_gene2698	5.839e-28	125.0	COG0640@1|root,COG0640@2|Bacteria,1ND8B@1224|Proteobacteria,2UI6G@28211|Alphaproteobacteria,2KGZ1@204458|Caulobacterales	204458|Caulobacterales	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_1315159_27	69395.JQLZ01000003_gene185	6.631e-11	72.0	2DGDD@1|root,2ZVHZ@2|Bacteria,1P9JZ@1224|Proteobacteria,2UXRU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1315159_2	1161401.ASJA01000017_gene1249	6.214e-118	401.0	COG4111@1|root,COG4111@2|Bacteria,1MXHA@1224|Proteobacteria,2TQQU@28211|Alphaproteobacteria,43WN2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	belongs to the nudix hydrolase family	MA20_42130	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1315159_14	1161401.ASJA01000017_gene1248	4.134e-39	152.0	COG5350@1|root,COG5350@2|Bacteria,1RDTX@1224|Proteobacteria,2U71X@28211|Alphaproteobacteria,4406G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein tyrosine phosphatase	MA20_42125	-	-	-	-	-	-	-	-	-	-	-	DSPc,Y_phosphatase
DYD3_k127_1315159_7	450851.PHZ_c1374	5.582e-85	287.0	COG1896@1|root,COG1896@2|Bacteria,1RACF@1224|Proteobacteria,2TUK3@28211|Alphaproteobacteria,2KF3T@204458|Caulobacterales	204458|Caulobacterales	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	ko:K06952	-	-	-	-	ko00000	-	-	-	HD,HD_3
DYD3_k127_1315159_15	314254.OA2633_14331	3.06e-38	154.0	COG0589@1|root,COG0589@2|Bacteria,1RBYK@1224|Proteobacteria,2U6WQ@28211|Alphaproteobacteria,43YFN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Universal stress protein family	-	-	-	-	-	-	-	-	-	-	-	-	Usp
DYD3_k127_1315159_10	394221.Mmar10_0797	8.994e-60	208.0	2D1BA@1|root,32TAA@2|Bacteria,1RJQD@1224|Proteobacteria,2U780@28211|Alphaproteobacteria,43YDR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1315159_23	1449049.JONW01000005_gene1387	7.807e-23	106.0	COG0784@1|root,COG0784@2|Bacteria	2|Bacteria	T	Response regulator, receiver	arcB_2	-	-	-	-	-	-	-	-	-	-	-	HTH_18,PAS_4,PAS_9,Response_reg
DYD3_k127_1315159_26	396588.Tgr7_0594	1.273e-18	100.0	28HC9@1|root,2Z7P5@2|Bacteria,1R4BH@1224|Proteobacteria,1RSAN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1315159_25	1121949.AQXT01000002_gene2611	9.366e-21	104.0	28I6Z@1|root,2Z89U@2|Bacteria,1R8YM@1224|Proteobacteria,2V7U8@28211|Alphaproteobacteria,43ZPM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	von Willebrand factor (vWF) type A domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1315159_4	935840.JAEQ01000008_gene730	2.841e-105	344.0	COG2041@1|root,COG2041@2|Bacteria,1MWZK@1224|Proteobacteria,2TTCH@28211|Alphaproteobacteria,43JZF@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Oxidoreductase molybdopterin binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_molyb
DYD3_k127_1315159_8	765698.Mesci_0406	1.267e-79	273.0	COG1018@1|root,COG1018@2|Bacteria,1R5FN@1224|Proteobacteria,2U080@28211|Alphaproteobacteria,43JW2@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Oxidoreductase FAD-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_6,NAD_binding_1
DYD3_k127_1315159_11	1123229.AUBC01000016_gene4221	9.333e-50	187.0	COG1434@1|root,COG1434@2|Bacteria,1MVW8@1224|Proteobacteria,2U6XK@28211|Alphaproteobacteria,3JVS4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DUF218 domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF218
DYD3_k127_1315159_18	1245469.S58_46880	3.648e-33	130.0	COG0640@1|root,COG0640@2|Bacteria,1RJ39@1224|Proteobacteria,2UA6C@28211|Alphaproteobacteria,3JZMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
DYD3_k127_1315159_21	981384.AEYW01000006_gene2357	9.157e-28	118.0	COG3832@1|root,COG3832@2|Bacteria,1NDMK@1224|Proteobacteria,2VGXP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_1315159_0	1492922.GY26_12970	2.78e-125	416.0	COG2271@1|root,COG2271@2|Bacteria,1QWH9@1224|Proteobacteria,1T3YV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
DYD3_k127_1315159_17	1408418.JNJH01000021_gene1622	1.813e-33	145.0	COG0454@1|root,COG0456@2|Bacteria,1N506@1224|Proteobacteria,2TWEW@28211|Alphaproteobacteria,2JUWU@204441|Rhodospirillales	204441|Rhodospirillales	K	Acetyltransferase (GNAT) family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_1315159_9	935848.JAEN01000014_gene1690	3.545e-68	241.0	COG2818@1|root,COG2818@2|Bacteria,1R9X5@1224|Proteobacteria,2TUP5@28211|Alphaproteobacteria,2PUDX@265|Paracoccus	28211|Alphaproteobacteria	L	Methyladenine glycosylase	tag	-	3.2.2.20	ko:K01246	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Adenine_glyco
DYD3_k127_1315159_12	1247963.JPHU01000012_gene876	8.729e-46	177.0	COG0354@1|root,COG0354@2|Bacteria,1N852@1224|Proteobacteria,2TR8J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the GcvT family	ygfZ	-	-	ko:K06980,ko:K22073	-	-	-	-	ko00000,ko01000,ko03016,ko03029	-	-	-	GCV_T,GCV_T_C
DYD3_k127_1315159_6	1161401.ASJA01000003_gene2849	4.534e-85	288.0	28H5T@1|root,2Z7IB@2|Bacteria,1N7V9@1224|Proteobacteria,2TTZQ@28211|Alphaproteobacteria,43X70@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1315159_16	627192.SLG_09430	5.91e-38	165.0	COG0657@1|root,COG0657@2|Bacteria,1NA4A@1224|Proteobacteria,2U2SJ@28211|Alphaproteobacteria,2K268@204457|Sphingomonadales	204457|Sphingomonadales	I	Carboxylesterase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
DYD3_k127_1315159_22	1161401.ASJA01000003_gene2948	5.133e-25	107.0	2E7H7@1|root,33EKK@2|Bacteria,1NIUX@1224|Proteobacteria,2UJWB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1315159_28	551789.ATVJ01000002_gene2698	3.437e-07	59.0	COG5451@1|root,COG5451@2|Bacteria,1MYIV@1224|Proteobacteria,2UGCX@28211|Alphaproteobacteria,43YSQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2385)	MA20_42075	-	-	-	-	-	-	-	-	-	-	-	DUF2385
DYD3_k127_1315159_13	1292034.OR37_03777	2.571e-44	166.0	COG1051@1|root,COG1051@2|Bacteria,1N1XV@1224|Proteobacteria,2UDI0@28211|Alphaproteobacteria,2KGZJ@204458|Caulobacterales	204458|Caulobacterales	F	Belongs to the Nudix hydrolase family	-	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
DYD3_k127_1315159_19	172088.AUGA01000016_gene2448	6.429e-31	141.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial signalling protein N terminal repeat	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_4,PAS_7,PAS_8,dCache_1
DYD3_k127_1315159_5	338969.Rfer_2356	7.02e-90	323.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2VJNX@28216|Betaproteobacteria,4AJWE@80864|Comamonadaceae	28216|Betaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_3,PAS_9,Response_reg
DYD3_k127_1315159_24	1174684.EBMC1_06419	4.009e-21	98.0	COG3279@1|root,COG3279@2|Bacteria,1N903@1224|Proteobacteria,2UFKD@28211|Alphaproteobacteria,2K4U9@204457|Sphingomonadales	204457|Sphingomonadales	KT	LytTr DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	LytTR
DYD3_k127_1317433_0	244582.JQAK01000001_gene1600	3.085e-11	74.0	2AKUG@1|root,31BMK@2|Bacteria,1Q7GM@1224|Proteobacteria,2VDMW@28211|Alphaproteobacteria,47GI6@766|Rickettsiales	766|Rickettsiales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1317433_1	1089552.KI911559_gene1810	0.0007529	46.0	2CFZY@1|root,33DC2@2|Bacteria,1NKRH@1224|Proteobacteria,2UKY5@28211|Alphaproteobacteria,2JY8B@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1318106_6	1122613.ATUP01000001_gene753	1.087e-82	285.0	28H8H@1|root,2Z7KE@2|Bacteria,1MV77@1224|Proteobacteria,2TSVV@28211|Alphaproteobacteria,43X3A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Aerotolerance regulator N-terminal	MA20_44655	-	-	-	-	-	-	-	-	-	-	-	BatA,DUF4159
DYD3_k127_1318106_0	1161401.ASJA01000003_gene2818	1.281e-225	718.0	COG5426@1|root,COG5426@2|Bacteria,1MVWA@1224|Proteobacteria,2TQNQ@28211|Alphaproteobacteria,43W9X@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	membrane	MA20_44660	-	-	-	-	-	-	-	-	-	-	-	GATase1_like
DYD3_k127_1318106_5	1123237.Salmuc_05543	1.352e-111	379.0	COG0645@1|root,COG2187@1|root,COG0645@2|Bacteria,COG2187@2|Bacteria,1MU9M@1224|Proteobacteria,2TQJN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Aminoglycoside phosphotransferase	-	-	-	ko:K07028	-	-	-	-	ko00000	-	-	-	AAA_33,APH
DYD3_k127_1318106_1	1121124.JNIX01000013_gene1449	8.843e-196	619.0	COG1252@1|root,COG1252@2|Bacteria,1MX96@1224|Proteobacteria,2TQT2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Pyridine nucleotide-disulphide oxidoreductase	-	-	1.6.99.3	ko:K03885	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD3_k127_1318106_8	76114.ebA299	7.428e-20	105.0	COG2010@1|root,COG2010@2|Bacteria,1N9X8@1224|Proteobacteria,2W3XT@28216|Betaproteobacteria	28216|Betaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
DYD3_k127_1318106_3	1123020.AUIE01000005_gene4241	8.871e-175	563.0	COG0277@1|root,COG0277@2|Bacteria,1MY08@1224|Proteobacteria,1RNNT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	FAD linked oxidase domain protein	-	-	1.17.99.1	ko:K05797	ko00623,ko01100,ko01120,map00623,map01100,map01120	-	R02675,R11194	RC00769	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_1318106_7	76114.ebA299	1.558e-21	107.0	COG2010@1|root,COG2010@2|Bacteria,1N9X8@1224|Proteobacteria,2W3XT@28216|Betaproteobacteria	28216|Betaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
DYD3_k127_1318106_2	1123020.AUIE01000005_gene4241	3.137e-181	580.0	COG0277@1|root,COG0277@2|Bacteria,1MY08@1224|Proteobacteria,1RNNT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	FAD linked oxidase domain protein	-	-	1.17.99.1	ko:K05797	ko00623,ko01100,ko01120,map00623,map01100,map01120	-	R02675,R11194	RC00769	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_1318106_4	1033734.CAET01000056_gene1345	1.321e-161	556.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1V091@1239|Firmicutes,4HCPE@91061|Bacilli,1ZFCQ@1386|Bacillus	91061|Bacilli	CG	COG4993 Glucose dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_1361205_3	626418.bglu_1g25230	1.555e-82	282.0	COG0415@1|root,COG0415@2|Bacteria,1MV9Y@1224|Proteobacteria,2VITS@28216|Betaproteobacteria,1K2ZA@119060|Burkholderiaceae	28216|Betaproteobacteria	L	DNA photolyase	phrB	-	4.1.99.3	ko:K01669	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_photolyase,FAD_binding_7
DYD3_k127_1361205_6	1161401.ASJA01000009_gene1851	6.163e-49	189.0	COG1216@1|root,COG1216@2|Bacteria,1MXTK@1224|Proteobacteria,2U4JQ@28211|Alphaproteobacteria,43XFH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1361205_10	551789.ATVJ01000002_gene3127	2.071e-19	94.0	COG0790@1|root,COG0790@2|Bacteria,1N8SR@1224|Proteobacteria,2UFFQ@28211|Alphaproteobacteria,43YMK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0790 FOG TPR repeat, SEL1 subfamily	MA20_36515	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
DYD3_k127_1361205_12	1384054.N790_14190	7.555e-11	72.0	COG5455@1|root,COG5455@2|Bacteria,1RJVB@1224|Proteobacteria	1224|Proteobacteria	D	Nickel/cobalt transporter regulator	-	-	-	-	-	-	-	-	-	-	-	-	RcnB
DYD3_k127_1361205_7	1429916.X566_14005	1.731e-46	179.0	COG2050@1|root,COG2050@2|Bacteria,1RK46@1224|Proteobacteria,2U9U1@28211|Alphaproteobacteria,3JYKR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_1361205_0	1161401.ASJA01000018_gene1242	1.671e-237	743.0	COG0064@1|root,COG0064@2|Bacteria,1MUKG@1224|Proteobacteria,2TRHX@28211|Alphaproteobacteria,43WGY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatB	GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.3.5.6,6.3.5.7	ko:K02434	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	GatB_N,GatB_Yqey
DYD3_k127_1361205_2	1123503.KB908058_gene1011	1.883e-89	302.0	COG0805@1|root,COG0805@2|Bacteria,1MVAY@1224|Proteobacteria,2TTIX@28211|Alphaproteobacteria,2KFZ7@204458|Caulobacterales	204458|Caulobacterales	U	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides	tatC	-	-	ko:K03118	ko03060,ko03070,map03060,map03070	M00336	-	-	ko00000,ko00001,ko00002,ko02044	2.A.64	-	-	TatC
DYD3_k127_1361205_8	1161401.ASJA01000018_gene1194	4.255e-23	105.0	COG1826@1|root,COG1826@2|Bacteria,1N73F@1224|Proteobacteria,2UF4Z@28211|Alphaproteobacteria,43YJS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation	tatB	GO:0003674,GO:0005215	-	ko:K03117	ko03060,ko03070,map03060,map03070	M00336	-	-	ko00000,ko00001,ko00002,ko02044	2.A.64	-	-	MttA_Hcf106
DYD3_k127_1361205_11	1161401.ASJA01000018_gene1193	1.358e-12	70.0	COG1826@1|root,COG1826@2|Bacteria,1NGDP@1224|Proteobacteria,2V712@28211|Alphaproteobacteria,43YUM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	mttA/Hcf106 family	-	-	-	ko:K03116	ko03060,ko03070,map03060,map03070	M00336	-	-	ko00000,ko00001,ko00002,ko02044	2.A.64	-	-	MttA_Hcf106
DYD3_k127_1361205_4	1121948.AUAC01000002_gene1102	2.731e-66	239.0	COG1386@1|root,COG1386@2|Bacteria,1PUA6@1224|Proteobacteria,2TU64@28211|Alphaproteobacteria,43WFU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves	scpB	-	-	ko:K06024	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpB
DYD3_k127_1361205_5	1161401.ASJA01000018_gene1191	6.566e-60	230.0	COG1354@1|root,COG1354@2|Bacteria,1MVCN@1224|Proteobacteria,2TS1V@28211|Alphaproteobacteria,43XG6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves	scpA	-	-	ko:K05896	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpA
DYD3_k127_1361205_1	1134912.AJTV01000009_gene1931	1.981e-101	343.0	COG1472@1|root,COG1472@2|Bacteria,1MVAJ@1224|Proteobacteria,2TRJK@28211|Alphaproteobacteria,36XNA@31993|Methylocystaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase family 3 N terminal domain	nagZ	-	3.2.1.21,3.2.1.52	ko:K01207,ko:K05349	ko00460,ko00500,ko00520,ko00531,ko00940,ko01100,ko01110,ko01501,map00460,map00500,map00520,map00531,map00940,map01100,map01110,map01501	M00628	R00022,R00026,R02558,R02887,R02985,R03527,R04949,R04998,R05963,R07809,R07810,R10035,R10039,R10040,R10831	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko00002,ko01000	-	GH3	-	Glyco_hydro_3
DYD3_k127_1361205_9	1280948.HY36_11265	2.023e-19	93.0	COG3087@1|root,COG3087@2|Bacteria,1Q2NJ@1224|Proteobacteria,2V9XS@28211|Alphaproteobacteria,43XYQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Sporulation related domain	-	-	-	-	-	-	-	-	-	-	-	-	SPOR
DYD3_k127_1368318_1	1161401.ASJA01000003_gene2825	2.894e-77	272.0	COG0617@1|root,COG0617@2|Bacteria,1MVCS@1224|Proteobacteria,2TRPZ@28211|Alphaproteobacteria,43WDP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	tRNA nucleotidyltransferase poly(A) polymerase	pcnB	-	2.7.7.19,2.7.7.72	ko:K00970,ko:K00974	ko03013,ko03018,map03013,map03018	-	R09382,R09383,R09384,R09386	RC00078	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	PolyA_pol,PolyA_pol_RNAbd
DYD3_k127_1368318_5	1161401.ASJA01000003_gene2824	1.822e-11	70.0	2AKMW@1|root,31BEC@2|Bacteria,1Q792@1224|Proteobacteria,2V70H@28211|Alphaproteobacteria,43YT3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1368318_4	1161401.ASJA01000003_gene2823	8.168e-58	213.0	COG0494@1|root,COG0494@2|Bacteria,1RD2C@1224|Proteobacteria,2TV3Q@28211|Alphaproteobacteria,43XMI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	MA20_44635	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_1368318_3	551789.ATVJ01000001_gene578	2.68e-58	209.0	COG3816@1|root,COG3816@2|Bacteria,1RD5Q@1224|Proteobacteria,2U7DA@28211|Alphaproteobacteria,43XMR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	MA20_44640	-	-	ko:K09986	-	-	-	-	ko00000	-	-	-	DUF1285
DYD3_k127_1368318_0	1161401.ASJA01000003_gene2821	3.078e-145	467.0	COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,2TR0T@28211|Alphaproteobacteria,43WWD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	ATPase, AAA	moxR	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	-	ko:K03924	-	-	-	-	ko00000,ko01000	-	-	-	AAA_3
DYD3_k127_1368318_2	394221.Mmar10_0724	5.166e-61	216.0	COG1721@1|root,COG1721@2|Bacteria,1MWPG@1224|Proteobacteria,2TTDX@28211|Alphaproteobacteria,43XSG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	conserved protein (some members contain a von Willebrand factor type A (vWA) domain)	MA20_44650	-	-	-	-	-	-	-	-	-	-	-	DUF58
DYD3_k127_1383244_1	1509405.GV67_09880	2.672e-08	55.0	COG2267@1|root,COG3629@1|root,COG2267@2|Bacteria,COG3629@2|Bacteria,1QU9N@1224|Proteobacteria,2TW44@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IT	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_1383244_0	935863.AWZR01000001_gene2025	3.269e-155	498.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,1RNGN@1236|Gammaproteobacteria,1X362@135614|Xanthomonadales	135614|Xanthomonadales	G	Dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	GSDH
DYD3_k127_1443242_22	504472.Slin_2698	0.0004955	52.0	COG0363@1|root,COG0363@2|Bacteria,4NGB9@976|Bacteroidetes,47KK9@768503|Cytophagia	976|Bacteroidetes	G	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	pgl	-	3.1.1.31	ko:K01057	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R02035	RC00537	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucosamine_iso
DYD3_k127_1443242_12	1161401.ASJA01000014_gene1028	4.169e-46	181.0	COG4246@1|root,COG4246@2|Bacteria,1N7Y1@1224|Proteobacteria,2TTZW@28211|Alphaproteobacteria,43Y04@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Esterase-like activity of phytase	-	-	-	-	-	-	-	-	-	-	-	-	Phytase-like
DYD3_k127_1443242_16	1479238.JQMZ01000001_gene473	3.233e-33	132.0	COG0227@1|root,COG0227@2|Bacteria,1MZ57@1224|Proteobacteria,2UBQU@28211|Alphaproteobacteria,43Y9M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL28 family	rpmB	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02902	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L28
DYD3_k127_1443242_11	1122613.ATUP01000001_gene858	9.014e-52	194.0	COG3064@1|root,COG3064@2|Bacteria,1NAWA@1224|Proteobacteria,2TSQY@28211|Alphaproteobacteria,43Y4K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF3108)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3108
DYD3_k127_1443242_15	1122613.ATUP01000001_gene858	9.683e-36	147.0	COG3064@1|root,COG3064@2|Bacteria,1NAWA@1224|Proteobacteria,2TSQY@28211|Alphaproteobacteria,43Y4K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF3108)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3108
DYD3_k127_1443242_13	1281779.H009_03789	4.301e-44	175.0	COG1835@1|root,COG1835@2|Bacteria,1RI29@1224|Proteobacteria,2U9U3@28211|Alphaproteobacteria,4BEB4@82115|Rhizobiaceae	28211|Alphaproteobacteria	M	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
DYD3_k127_1443242_0	1161401.ASJA01000001_gene289	3.352e-288	912.0	COG4581@1|root,COG4581@2|Bacteria,1MVD6@1224|Proteobacteria,2TR7N@28211|Alphaproteobacteria,43WP2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	COG0513 Superfamily II DNA and RNA helicases	-	-	3.6.4.13	ko:K17675	-	-	-	-	ko00000,ko01000,ko03029	-	-	-	Helicase_C
DYD3_k127_1443242_19	69395.JQLZ01000001_gene3465	1.156e-20	106.0	COG1188@1|root,COG1188@2|Bacteria,1PBTE@1224|Proteobacteria,2VAP7@28211|Alphaproteobacteria,2KH55@204458|Caulobacterales	204458|Caulobacterales	J	S4 domain protein	-	-	-	ko:K04762	-	-	-	-	ko00000,ko03110	-	-	-	S4
DYD3_k127_1443242_18	1161401.ASJA01000001_gene287	3.251e-28	124.0	COG4103@1|root,COG4103@2|Bacteria,1N6YZ@1224|Proteobacteria,2U93G@28211|Alphaproteobacteria,43Y6P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	TerB
DYD3_k127_1443242_10	1280954.HPO_16315	8.301e-60	209.0	COG1146@1|root,COG1146@2|Bacteria,1RH5I@1224|Proteobacteria,2U98K@28211|Alphaproteobacteria,43XWG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions	fdxA	-	-	ko:K05524	-	-	-	-	ko00000	-	-	-	DUF3470,Fer4
DYD3_k127_1443242_6	1123503.KB908057_gene2731	1.256e-73	252.0	COG1329@1|root,COG1329@2|Bacteria,1MWI2@1224|Proteobacteria,2TTVP@28211|Alphaproteobacteria,2KFC7@204458|Caulobacterales	204458|Caulobacterales	K	CarD family	-	-	-	ko:K07736	-	-	-	-	ko00000,ko03000	-	-	-	CarD_CdnL_TRCF
DYD3_k127_1443242_17	1123059.KB823014_gene61	8.653e-32	141.0	COG1525@1|root,COG1525@2|Bacteria,1R3VA@1224|Proteobacteria,2U0NK@28211|Alphaproteobacteria,43XSZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	nuclease	-	-	-	-	-	-	-	-	-	-	-	-	SNase
DYD3_k127_1443242_5	1211114.ALIP01000139_gene2160	7.385e-97	325.0	COG0330@1|root,COG0330@2|Bacteria,1P8ZI@1224|Proteobacteria,1RUQU@1236|Gammaproteobacteria,1X4NG@135614|Xanthomonadales	135614|Xanthomonadales	O	membrane	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
DYD3_k127_1443242_20	1385517.N800_13990	6.295e-18	84.0	COG4877@1|root,COG4877@2|Bacteria,1NAUN@1224|Proteobacteria,1SDEU@1236|Gammaproteobacteria,1X83P@135614|Xanthomonadales	135614|Xanthomonadales	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	Arc
DYD3_k127_1443242_2	13689.BV96_00310	1.136e-151	499.0	COG0659@1|root,COG0659@2|Bacteria,1MVWV@1224|Proteobacteria,2TUH6@28211|Alphaproteobacteria,2K0ZF@204457|Sphingomonadales	204457|Sphingomonadales	P	Sulfate transporter	-	-	-	ko:K03321	-	-	-	-	ko00000,ko02000	2.A.53.3	-	-	STAS,Sulfate_transp
DYD3_k127_1443242_4	190650.CC_2971	1.02e-125	428.0	COG0642@1|root,COG0784@1|root,COG2203@1|root,COG0784@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria	1224|Proteobacteria	T	Histidine kinase	-	-	2.7.13.3	ko:K03407	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035	-	-	-	GAF,HAMP,HATPase_c,HisKA,Hpt,PAS_3,PAS_4,PAS_9,Response_reg,sCache_3_2
DYD3_k127_1443242_8	1117943.SFHH103_00256	5.773e-65	229.0	2B1WT@1|root,31UCY@2|Bacteria,1NK5F@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1443242_1	1040987.AZUY01000005_gene2119	6.064e-170	563.0	COG1748@1|root,COG1748@2|Bacteria,1P35E@1224|Proteobacteria,2TSYM@28211|Alphaproteobacteria,43KNV@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Domain of unknown function (DUF4166)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4166,Sacchrp_dh_NADP
DYD3_k127_1443242_7	627192.SLG_31390	1.431e-66	253.0	COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,2UA2F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	ankyrin repeat	-	-	-	ko:K15503	-	-	-	-	ko00000,ko01009,ko03400	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5
DYD3_k127_1443242_14	1282876.BAOK01000001_gene1119	9.195e-37	149.0	COG0664@1|root,COG0664@2|Bacteria,1MVGE@1224|Proteobacteria,2TV0E@28211|Alphaproteobacteria,4BQUT@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix, cAMP Regulatory protein	fnrL	-	-	ko:K01420	-	-	-	-	ko00000,ko03000	-	-	-	Crp,HTH_Crp_2,cNMP_binding
DYD3_k127_1443242_9	1121106.JQKB01000004_gene2287	2.306e-64	229.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TTKG@28211|Alphaproteobacteria,2JR9I@204441|Rhodospirillales	204441|Rhodospirillales	KT	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	-	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1443242_3	582899.Hden_0593	3.14e-139	474.0	COG3829@1|root,COG4191@1|root,COG3829@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3N7PZ@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	T	PFAM ATP-binding region ATPase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	GAF,HAMP,HATPase_c,HisKA,PAS_3,PAS_4,PAS_7,PAS_9,Response_reg
DYD3_k127_1443242_21	1280953.HOC_08479	1.149e-07	64.0	2AAHH@1|root,30ZUJ@2|Bacteria,1PMTD@1224|Proteobacteria,2V0DK@28211|Alphaproteobacteria,4407Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1449489_5	394221.Mmar10_2786	3.291e-33	134.0	COG1670@1|root,COG1670@2|Bacteria,1N6Q1@1224|Proteobacteria,2UG72@28211|Alphaproteobacteria,43YFW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins	MA20_44020	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
DYD3_k127_1449489_0	1121123.AUAO01000002_gene283	3.768e-161	513.0	COG0536@1|root,COG0536@2|Bacteria,1MUGZ@1224|Proteobacteria,2TR5I@28211|Alphaproteobacteria,2KF3Z@204458|Caulobacterales	204458|Caulobacterales	S	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control	obg	-	-	ko:K03979	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	GTP1_OBG,MMR_HSR1
DYD3_k127_1449489_2	450851.PHZ_c0251	3.486e-65	229.0	COG1057@1|root,COG1057@2|Bacteria,1RD0J@1224|Proteobacteria,2U6ZC@28211|Alphaproteobacteria,2KG6Z@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)	nadD	-	2.7.7.18	ko:K00969	ko00760,ko01100,map00760,map01100	M00115	R00137,R03005	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
DYD3_k127_1449489_1	394221.Mmar10_2792	9.546e-95	323.0	COG4301@1|root,COG4301@2|Bacteria,1MUCG@1224|Proteobacteria,2TRMH@28211|Alphaproteobacteria,43XHS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Histidine-specific methyltransferase, SAM-dependent	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_33
DYD3_k127_1449489_4	1292034.OR37_03686	1.093e-41	159.0	COG0799@1|root,COG0799@2|Bacteria,1MZEF@1224|Proteobacteria,2UBSV@28211|Alphaproteobacteria,2KGTH@204458|Caulobacterales	204458|Caulobacterales	J	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation	rsfS	-	-	ko:K09710	-	-	-	-	ko00000,ko03009	-	-	-	RsfS
DYD3_k127_1449489_3	935848.JAEN01000029_gene2799	1.33e-46	172.0	COG1576@1|root,COG1576@2|Bacteria,1R9Z2@1224|Proteobacteria,2U95Q@28211|Alphaproteobacteria,2PU5Y@265|Paracoccus	28211|Alphaproteobacteria	J	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA	rlmH	-	2.1.1.177	ko:K00783	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	SPOUT_MTase
DYD3_k127_1449489_6	394221.Mmar10_2795	1.101e-11	72.0	COG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,2TUSP@28211|Alphaproteobacteria,43WM3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	COG4942 Membrane-bound metallopeptidase	filA	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_1457114_3	1280947.HY30_00245	3.393e-12	74.0	2AFF9@1|root,315FA@2|Bacteria,1PVI1@1224|Proteobacteria,2V6WX@28211|Alphaproteobacteria,43YG1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1457114_4	582402.Hbal_1133	1.288e-08	66.0	2AFF9@1|root,315FA@2|Bacteria,1PVI1@1224|Proteobacteria,2V6WX@28211|Alphaproteobacteria,43YG1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1457114_0	1161401.ASJA01000017_gene1251	3.449e-163	521.0	COG0379@1|root,COG0379@2|Bacteria,1MWQU@1224|Proteobacteria,2TRPG@28211|Alphaproteobacteria,43X6U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate	nadA	-	2.5.1.72	ko:K03517	ko00760,ko01100,map00760,map01100	M00115	R04292	RC01119	ko00000,ko00001,ko00002,ko01000	-	-	-	NadA
DYD3_k127_1457114_1	314254.OA2633_14561	2.478e-120	394.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TTN3@28211|Alphaproteobacteria,43WPS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components	oppB	-	-	ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	BPD_transp_1
DYD3_k127_1509673_4	236097.ADG881_1850	1.828e-37	145.0	290UJ@1|root,2ZNGJ@2|Bacteria,1RBSP@1224|Proteobacteria,1S3RZ@1236|Gammaproteobacteria,1XKS8@135619|Oceanospirillales	135619|Oceanospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1509673_2	1121033.AUCF01000014_gene1299	2.423e-77	286.0	COG0642@1|root,COG0642@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TXJ2@28211|Alphaproteobacteria,2JPEA@204441|Rhodospirillales	204441|Rhodospirillales	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,Hpt,PAS,PAS_4,PAS_7,Response_reg
DYD3_k127_1509673_1	1161401.ASJA01000003_gene2981	2.425e-95	324.0	COG0217@1|root,COG0217@2|Bacteria,1MW3X@1224|Proteobacteria,2TRSK@28211|Alphaproteobacteria,43W4Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulatory protein	MA20_17930	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	Transcrip_reg
DYD3_k127_1509673_5	1342301.JASD01000008_gene2446	1.446e-17	95.0	29YUQ@1|root,30KR4@2|Bacteria,1R31B@1224|Proteobacteria,2TZVX@28211|Alphaproteobacteria,3ZW7Q@60136|Sulfitobacter	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1906)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1906
DYD3_k127_1509673_0	391600.ABRU01000021_gene893	4.997e-119	390.0	COG1692@1|root,COG1692@2|Bacteria,1MW12@1224|Proteobacteria,2TS4S@28211|Alphaproteobacteria,2KFPT@204458|Caulobacterales	204458|Caulobacterales	S	metallophosphoesterase	-	-	-	ko:K09769	-	-	-	-	ko00000	-	-	-	YmdB
DYD3_k127_1509673_3	1207063.P24_06367	6.686e-44	169.0	COG0212@1|root,COG0212@2|Bacteria,1MZG0@1224|Proteobacteria,2UBY4@28211|Alphaproteobacteria,2JTJ1@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	-	-	6.3.3.2	ko:K01934	ko00670,ko01100,map00670,map01100	-	R02301	RC00183	ko00000,ko00001,ko01000	-	-	-	5-FTHF_cyc-lig
DYD3_k127_1519112_16	1265503.KB905170_gene83	7.487e-20	98.0	COG3909@1|root,COG3909@2|Bacteria,1N1E5@1224|Proteobacteria,1S4BY@1236|Gammaproteobacteria,2Q7E7@267889|Colwelliaceae	1236|Gammaproteobacteria	C	Cytochrome C'	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C_2
DYD3_k127_1519112_13	383372.Rcas_3787	1.312e-40	159.0	COG2096@1|root,COG2096@2|Bacteria,2G6TB@200795|Chloroflexi,3777D@32061|Chloroflexia	32061|Chloroflexia	S	PFAM cobalamin adenosyltransferase	-	-	2.5.1.17	ko:K00798	ko00860,ko01100,map00860,map01100	M00122	R01492,R05220,R07268	RC00533	ko00000,ko00001,ko00002,ko01000	-	-	-	Cob_adeno_trans
DYD3_k127_1519112_0	627192.SLG_09440	5.391e-204	647.0	COG3670@1|root,COG3670@2|Bacteria,1MY1X@1224|Proteobacteria,2TS7A@28211|Alphaproteobacteria,2K2TY@204457|Sphingomonadales	204457|Sphingomonadales	Q	Retinal pigment epithelial membrane protein	-	-	1.13.11.82	ko:K11159,ko:K21822	-	-	-	-	ko00000,ko01000	-	-	-	RPE65
DYD3_k127_1519112_8	1116232.AHBF01000068_gene8908	3.837e-114	384.0	COG1062@1|root,COG1062@2|Bacteria,2GKJC@201174|Actinobacteria	201174|Actinobacteria	C	alcohol dehydrogenase	-	-	1.1.1.90	ko:K00055	ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220	M00537,M00538	R01763,R02611,R04304,R05282,R05347,R05348	RC00087,RC00116	ko00000,ko00001,ko00002,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_1519112_10	627192.SLG_09430	4.352e-70	248.0	COG0657@1|root,COG0657@2|Bacteria,1NA4A@1224|Proteobacteria,2U2SJ@28211|Alphaproteobacteria,2K268@204457|Sphingomonadales	204457|Sphingomonadales	I	Carboxylesterase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
DYD3_k127_1519112_14	643473.KB235930_gene832	1.872e-37	143.0	COG2329@1|root,COG2329@2|Bacteria,1G7DQ@1117|Cyanobacteria,1HNZK@1161|Nostocales	1117|Cyanobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_1519112_4	1449076.JOOE01000002_gene723	1.456e-144	473.0	COG0477@1|root,COG2814@2|Bacteria,1NU31@1224|Proteobacteria,2U5M0@28211|Alphaproteobacteria,2KEAE@204457|Sphingomonadales	204457|Sphingomonadales	EGP	of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_1519112_17	627192.SLG_09380	4.98e-12	76.0	2FFKQ@1|root,347I4@2|Bacteria,1P8PF@1224|Proteobacteria,2UYV6@28211|Alphaproteobacteria,2KAJJ@204457|Sphingomonadales	2|Bacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_1519112_15	627192.SLG_09380	9.944e-26	115.0	2FFKQ@1|root,347I4@2|Bacteria,1P8PF@1224|Proteobacteria,2UYV6@28211|Alphaproteobacteria,2KAJJ@204457|Sphingomonadales	2|Bacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_1519112_6	614083.AWQR01000022_gene106	2.191e-127	417.0	COG2159@1|root,COG2159@2|Bacteria,1MXI7@1224|Proteobacteria,2VP80@28216|Betaproteobacteria,4ADEX@80864|Comamonadaceae	28216|Betaproteobacteria	S	Amidohydrolase	-	-	4.1.1.103,4.1.1.46	ko:K07045,ko:K14333,ko:K20941	ko00362,ko00627,ko01120,map00362,map00627,map01120	-	R00821,R11353	RC00390,RC00569	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
DYD3_k127_1519112_1	1123072.AUDH01000003_gene991	3.597e-176	568.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,2JVG8@204441|Rhodospirillales	204441|Rhodospirillales	C	Aldehyde dehydrogenase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldedh
DYD3_k127_1519112_18	742159.HMPREF0004_5170	5.332e-05	52.0	2DRAP@1|root,33AZC@2|Bacteria,1NGK6@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF2946
DYD3_k127_1519112_9	472759.Nhal_2591	1.872e-88	308.0	COG2831@1|root,COG4313@1|root,COG2831@2|Bacteria,COG4313@2|Bacteria,1QW38@1224|Proteobacteria,1T2R4@1236|Gammaproteobacteria,1WZCA@135613|Chromatiales	135613|Chromatiales	U	Protein of unknown function (DUF3570)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3570
DYD3_k127_1519112_2	349124.Hhal_0607	6.623e-175	560.0	COG1115@1|root,COG1115@2|Bacteria,1MUI3@1224|Proteobacteria,1RMNF@1236|Gammaproteobacteria,1WXAG@135613|Chromatiales	135613|Chromatiales	E	PFAM sodium alanine symporter	-	-	-	ko:K03310	-	-	-	-	ko00000	2.A.25	-	-	Na_Ala_symp
DYD3_k127_1519112_3	627192.SLG_27970	7.72e-155	506.0	COG3670@1|root,COG3670@2|Bacteria,1MY1X@1224|Proteobacteria,2TS7A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	dioxygenase	MA20_08640	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_1519112_7	450851.PHZ_c1158	7.557e-121	394.0	COG1741@1|root,COG1741@2|Bacteria,1MWIP@1224|Proteobacteria,2TRHR@28211|Alphaproteobacteria,2KG38@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the pirin family	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin,Pirin_C
DYD3_k127_1519112_12	582899.Hden_2464	5.165e-41	168.0	COG1905@1|root,COG1905@2|Bacteria,1RHBU@1224|Proteobacteria,2U72T@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit	fdsG	-	-	ko:K00127	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001	-	-	-	2Fe-2S_thioredx
DYD3_k127_1519112_5	631454.N177_2458	5.93e-134	438.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2TR1V@28211|Alphaproteobacteria,1JPUC@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region	fdsB	-	1.6.5.3	ko:K00124,ko:K00335	ko00190,ko00630,ko00680,ko01100,ko01120,ko01200,map00190,map00630,map00680,map01100,map01120,map01200	M00144	R00519,R11945	RC00061,RC02796	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_51K,NADH_4Fe-4S,SLBB
DYD3_k127_152461_1	627192.SLG_25160	5.177e-58	215.0	2EVK9@1|root,33P0C@2|Bacteria,1P9RH@1224|Proteobacteria,2UVJR@28211|Alphaproteobacteria,2KE01@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_152461_3	709986.Deima_2255	2.169e-29	130.0	COG0666@1|root,COG0666@2|Bacteria	2|Bacteria	G	response to abiotic stimulus	-	-	-	ko:K06867	-	-	-	-	ko00000	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5
DYD3_k127_152461_2	234267.Acid_7342	8.43e-38	154.0	COG2207@1|root,COG2207@2|Bacteria,3Y8UC@57723|Acidobacteria	57723|Acidobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K07506	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
DYD3_k127_152461_0	1123503.KB908056_gene1276	8.067e-195	628.0	COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,2KF0Z@204458|Caulobacterales	204458|Caulobacterales	T	Histidine kinase	-	-	2.7.13.3	ko:K13587	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,Response_reg
DYD3_k127_1537581_2	1123503.KB908058_gene1047	4.734e-69	248.0	COG2885@1|root,COG3637@1|root,COG2885@2|Bacteria,COG3637@2|Bacteria,1N6EM@1224|Proteobacteria,2U17R@28211|Alphaproteobacteria,2KFB3@204458|Caulobacterales	204458|Caulobacterales	M	Belongs to the ompA family	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA
DYD3_k127_1537581_3	1161401.ASJA01000002_gene2680	4.355e-28	122.0	2CJDM@1|root,32Z3W@2|Bacteria,1N7ZP@1224|Proteobacteria,2UF79@28211|Alphaproteobacteria,43YPZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	YMGG-like Gly-zipper	-	-	-	-	-	-	-	-	-	-	-	-	Gly-zipper_Omp,Gly-zipper_YMGG
DYD3_k127_1537581_0	331869.BAL199_05124	4.503e-139	447.0	COG1305@1|root,COG1305@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,4BRVN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_1537581_4	1429046.RR21198_5313	2.157e-25	109.0	COG1544@1|root,COG1544@2|Bacteria,2GPJ5@201174|Actinobacteria,4G331@85025|Nocardiaceae	201174|Actinobacteria	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase	-	-	-	-	-	-	-	-	-	-	-	-	Ribosomal_S30AE
DYD3_k127_1537581_1	1280947.HY30_00735	2.101e-88	304.0	COG0664@1|root,COG0664@2|Bacteria,1NEQM@1224|Proteobacteria,2U1CS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator, Crp Fnr family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_1537581_5	1280947.HY30_00740	6.86e-10	66.0	COG3920@1|root,COG3920@2|Bacteria	2|Bacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA_2,PAS_3,PAS_9
DYD3_k127_1545006_11	391937.NA2_19276	1.158e-44	166.0	COG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,2UBRG@28211|Alphaproteobacteria,43K8H@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_1545006_9	1161401.ASJA01000001_gene555	4.893e-66	229.0	COG0629@1|root,COG0629@2|Bacteria,1RCWT@1224|Proteobacteria,2U5BZ@28211|Alphaproteobacteria,43XK6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	-	-	-	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	-	-	-	ko00000,ko00001,ko03029,ko03032,ko03400	-	-	-	SSB
DYD3_k127_1545006_19	1280954.HPO_09875	1.164e-17	89.0	COG5513@1|root,COG5513@2|Bacteria	2|Bacteria	G	serine-type aminopeptidase activity	-	-	-	ko:K02030,ko:K14475	ko05143,map05143	M00236	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3	-	-	Inhibitor_I42
DYD3_k127_1545006_20	391600.ABRU01000025_gene1251	1.63e-11	77.0	2DMPI@1|root,32SWD@2|Bacteria,1N2B7@1224|Proteobacteria,2UDY6@28211|Alphaproteobacteria,2KJBN@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	EF-hand_5
DYD3_k127_1545006_22	4533.OB05G28480.1	0.0001022	55.0	KOG0032@1|root,KOG0032@2759|Eukaryota,37R5U@33090|Viridiplantae,3GA7R@35493|Streptophyta,3KQTK@4447|Liliopsida,3I31S@38820|Poales	35493|Streptophyta	T	EF-hand domain	-	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009608,GO:0009877,GO:0009931,GO:0009987,GO:0010857,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044424,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564	2.7.11.1,2.7.11.17	ko:K08794,ko:K13412	ko04626,ko04921,ko04925,ko05145,map04626,map04921,map04925,map05145	-	-	-	ko00000,ko00001,ko01000,ko01001	-	-	-	EF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,Pkinase
DYD3_k127_1545006_0	582402.Hbal_1419	0.0	1247.0	COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,2TSPQ@28211|Alphaproteobacteria,43WP4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrA	-	5.99.1.3	ko:K02469	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
DYD3_k127_1545006_8	1161401.ASJA01000008_gene1620	8.576e-70	240.0	COG0669@1|root,COG0669@2|Bacteria,1RD9F@1224|Proteobacteria,2U74H@28211|Alphaproteobacteria,43XQI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate	coaD	-	2.7.7.3	ko:K00954	ko00770,ko01100,map00770,map01100	M00120	R03035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
DYD3_k127_1545006_18	1280950.HJO_14211	6.001e-23	115.0	COG4249@1|root,COG4249@2|Bacteria,1R3WZ@1224|Proteobacteria,2TUBK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	protein containing caspase domain	MA20_02090	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
DYD3_k127_1545006_16	1121381.JNIV01000034_gene1548	8.82e-25	121.0	COG0652@1|root,COG0652@2|Bacteria	2|Bacteria	O	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	-	-	5.2.1.8	ko:K01802,ko:K03768	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Pro_isomerase
DYD3_k127_1545006_10	633149.Bresu_1335	3.722e-57	211.0	COG0652@1|root,COG0652@2|Bacteria,1R62A@1224|Proteobacteria,2U3BZ@28211|Alphaproteobacteria,2KG56@204458|Caulobacterales	204458|Caulobacterales	M	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	-	-	5.2.1.8	ko:K01802	-	-	-	-	ko00000,ko01000	-	-	-	Pro_isomerase
DYD3_k127_1545006_7	1282362.AEAC466_08775	1.703e-71	245.0	COG0652@1|root,COG0652@2|Bacteria,1R9ZQ@1224|Proteobacteria,2U591@28211|Alphaproteobacteria,2KGE2@204458|Caulobacterales	204458|Caulobacterales	O	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	-	-	5.2.1.8	ko:K01802	-	-	-	-	ko00000,ko01000	-	-	-	Pro_isomerase
DYD3_k127_1545006_14	420324.KI911946_gene7658	5.42e-27	123.0	COG1787@1|root,COG1787@2|Bacteria,1MZWS@1224|Proteobacteria,2UDUX@28211|Alphaproteobacteria,1JQVA@119045|Methylobacteriaceae	28211|Alphaproteobacteria	V	PFAM restriction endonuclease	-	-	-	ko:K07448	-	-	-	-	ko00000,ko02048	-	-	-	Mrr_cat
DYD3_k127_1545006_3	1211115.ALIQ01000177_gene1596	4.889e-121	398.0	COG0809@1|root,COG0809@2|Bacteria,1MUH3@1224|Proteobacteria,2TS0D@28211|Alphaproteobacteria,3N9KC@45404|Beijerinckiaceae	28211|Alphaproteobacteria	J	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)	queA	GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.99.17	ko:K07568	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Queuosine_synth
DYD3_k127_1545006_2	1479238.JQMZ01000001_gene1940	3.102e-184	585.0	COG0343@1|root,COG0343@2|Bacteria,1MUCA@1224|Proteobacteria,2TR87@28211|Alphaproteobacteria,43WIJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)	tgt	-	2.4.2.29	ko:K00773	-	-	R03789,R10209	RC00063	ko00000,ko01000,ko03016	-	-	-	TGT
DYD3_k127_1545006_15	582402.Hbal_1423	1.127e-25	115.0	2DC1J@1|root,333E1@2|Bacteria,1N363@1224|Proteobacteria,2U01A@28211|Alphaproteobacteria,4416E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1545006_17	551789.ATVJ01000001_gene1044	1.045e-24	110.0	2FIXR@1|root,34ANN@2|Bacteria,1NNY2@1224|Proteobacteria,2UMAG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C_2
DYD3_k127_1545006_4	551789.ATVJ01000001_gene1043	1.489e-75	261.0	COG2370@1|root,COG2370@2|Bacteria,1MV6Z@1224|Proteobacteria,2TSX2@28211|Alphaproteobacteria,43XKC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	HupE / UreJ protein	-	-	-	-	-	-	-	-	-	-	-	-	HupE_UreJ_2
DYD3_k127_1545006_13	247633.GP2143_13076	2.174e-33	136.0	293ZC@1|root,2ZREC@2|Bacteria,1RDYU@1224|Proteobacteria,1S4U7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1545006_1	1280953.HOC_13144	5.397e-197	635.0	COG4206@1|root,COG4206@2|Bacteria,1N71E@1224|Proteobacteria,2TU7B@28211|Alphaproteobacteria,43Z4X@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_1545006_6	551789.ATVJ01000001_gene800	1.336e-73	265.0	COG3609@1|root,COG3609@2|Bacteria,1R0VU@1224|Proteobacteria	1224|Proteobacteria	K	addiction module antidote protein, CC2985 family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1545006_5	426117.M446_6722	2.826e-74	266.0	COG0582@1|root,COG0582@2|Bacteria,1MU23@1224|Proteobacteria,2U05W@28211|Alphaproteobacteria,1JVAT@119045|Methylobacteriaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Arm-DNA-bind_3,Phage_integrase
DYD3_k127_1545006_21	232721.Ajs_1562	6.275e-08	57.0	COG3311@1|root,COG3311@2|Bacteria,1NBCX@1224|Proteobacteria,2VWCT@28216|Betaproteobacteria,4AFYD@80864|Comamonadaceae	28216|Betaproteobacteria	K	PFAM Prophage CP4-57 regulatory	-	-	-	-	-	-	-	-	-	-	-	-	Phage_AlpA
DYD3_k127_1545006_12	1267535.KB906767_gene5157	2.85e-43	173.0	COG5519@1|root,COG5545@1|root,COG5519@2|Bacteria,COG5545@2|Bacteria,3Y8KU@57723|Acidobacteria	57723|Acidobacteria	L	Virulence-associated protein E	-	-	-	-	-	-	-	-	-	-	-	-	VirE
DYD3_k127_1584796_1	627192.SLG_21560	4.963e-135	451.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2K3GP@204457|Sphingomonadales	204457|Sphingomonadales	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_1584796_3	627192.SLG_06490	6.594e-83	304.0	COG0647@1|root,COG0647@2|Bacteria,1QGX4@1224|Proteobacteria,2U834@28211|Alphaproteobacteria,2K8P7@204457|Sphingomonadales	204457|Sphingomonadales	G	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_6,Hydrolase_like
DYD3_k127_1584796_0	627192.SLG_06500	3.984e-224	705.0	COG5016@1|root,COG5016@2|Bacteria,1QTTG@1224|Proteobacteria,2TT4W@28211|Alphaproteobacteria,2K9IS@204457|Sphingomonadales	204457|Sphingomonadales	C	Conserved carboxylase domain	-	-	4.1.1.3	ko:K01571	ko00620,ko01100,map00620,map01100	-	R00217	RC00040	ko00000,ko00001,ko01000,ko02000	3.B.1.1.1	-	-	HMGL-like,PYC_OADA
DYD3_k127_1584796_2	627192.SLG_06510	9.044e-101	333.0	COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,2TVJE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism	-	-	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
DYD3_k127_1584796_4	1157943.KB892705_gene1840	1.614e-07	58.0	COG1038@1|root,COG1038@2|Bacteria,2H238@201174|Actinobacteria,2356U@1762|Mycobacteriaceae	201174|Actinobacteria	C	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second	pyc	-	6.4.1.1	ko:K01958	ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230	M00173	R00344	RC00040,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,HMGL-like,PYC_OADA
DYD3_k127_1606977_5	666685.R2APBS1_0793	3.141e-17	89.0	COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1MWGR@1224|Proteobacteria,1RR88@1236|Gammaproteobacteria,1X51Q@135614|Xanthomonadales	135614|Xanthomonadales	EU	Prolyl oligopeptidase family	-	-	-	-	-	-	-	-	-	-	-	-	PD40,Peptidase_S9
DYD3_k127_1606977_1	1122604.JONR01000029_gene3378	3.311e-132	433.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,1S9NJ@1236|Gammaproteobacteria,1X5C8@135614|Xanthomonadales	135614|Xanthomonadales	P	COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit	-	-	1.14.12.1,1.14.15.7	ko:K00499,ko:K16319	ko00260,ko00627,ko01120,map00260,map00627,map01120	M00637	R00823,R00825,R07409	RC00087,RC00192	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_1606977_0	633149.Bresu_2274	2.029e-221	700.0	COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,2TSR0@28211|Alphaproteobacteria,2KG1V@204458|Caulobacterales	204458|Caulobacterales	Q	PFAM FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase
DYD3_k127_1606977_2	1282876.BAOK01000002_gene530	9.041e-110	376.0	COG2831@1|root,COG2831@2|Bacteria,1R6KX@1224|Proteobacteria,2TUEN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	COG2831 Hemolysin activation secretion protein	-	-	-	-	-	-	-	-	-	-	-	-	POTRA_2,ShlB
DYD3_k127_1606977_4	400668.Mmwyl1_0481	9.545e-21	109.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,1RSAX@1236|Gammaproteobacteria,1XRXS@135619|Oceanospirillales	135619|Oceanospirillales	U	The GLUG motif	-	-	-	-	-	-	-	-	-	-	-	-	Glug,Haemagg_act
DYD3_k127_1606977_3	1282876.BAOK01000002_gene533	2.653e-31	139.0	COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1R81Z@1224|Proteobacteria,2U2DW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	CHAT
DYD3_k127_1649384_26	1122613.ATUP01000002_gene2581	4.458e-16	84.0	COG0174@1|root,339XI@2|Bacteria,1NHE1@1224|Proteobacteria	1224|Proteobacteria	E	Sporulation domain-containing protein	-	-	-	-	-	-	-	-	-	-	-	-	SPOR
DYD3_k127_1649384_10	450851.PHZ_c1293	2.154e-90	309.0	COG0414@1|root,COG0414@2|Bacteria,1MV1S@1224|Proteobacteria,2TS2D@28211|Alphaproteobacteria,2KFAU@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate	panC	-	6.3.2.1	ko:K01918	ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110	M00119	R02473	RC00096,RC00141	ko00000,ko00001,ko00002,ko01000	-	-	-	Pantoate_ligase
DYD3_k127_1649384_14	443598.AUFA01000001_gene1283	8.343e-69	255.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TTSR@28211|Alphaproteobacteria,3JT13@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Domain of unknown function (DUF3369)	MA20_22735	-	-	-	-	-	-	-	-	-	-	-	DUF3369,HATPase_c,HisKA,Response_reg
DYD3_k127_1649384_15	460265.Mnod_1306	4.01e-62	238.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQTN@28211|Alphaproteobacteria,1JX9D@119045|Methylobacteriaceae	28211|Alphaproteobacteria	T	histidine kinase HAMP region domain protein	MA20_22730	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,PAS_8
DYD3_k127_1649384_8	627192.SLG_06630	6.245e-143	460.0	COG2159@1|root,COG2159@2|Bacteria,1MXI7@1224|Proteobacteria,2U15G@28211|Alphaproteobacteria,2K3JD@204457|Sphingomonadales	204457|Sphingomonadales	S	Amidohydrolase	-	-	4.1.1.46	ko:K14333,ko:K15063	ko00362,ko00627,ko01120,map00362,map00627,map01120	-	R00821,R09278	RC00390	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
DYD3_k127_1649384_16	1479238.JQMZ01000001_gene2002	7.244e-53	189.0	COG5458@1|root,COG5458@2|Bacteria,1N054@1224|Proteobacteria,2UBY1@28211|Alphaproteobacteria,43Y6Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1489)	MA20_36070	-	-	-	-	-	-	-	-	-	-	-	DUF1489
DYD3_k127_1649384_29	1123503.KB908059_gene195	2.813e-08	65.0	2DXU3@1|root,346K8@2|Bacteria,1P223@1224|Proteobacteria,2UUTV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1649384_2	394221.Mmar10_1727	9.882e-205	661.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,43WGX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit	MA20_30205	-	6.4.1.3,6.4.1.4	ko:K01965,ko:K01968	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00036,M00373,M00741	R01859,R04138	RC00097,RC00367,RC00609,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
DYD3_k127_1649384_11	394221.Mmar10_0981	1.242e-85	294.0	COG0673@1|root,COG0673@2|Bacteria,1MV7C@1224|Proteobacteria,2U17I@28211|Alphaproteobacteria,43XEY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA
DYD3_k127_1649384_22	1161401.ASJA01000008_gene1712	6.825e-26	111.0	COG0776@1|root,COG0776@2|Bacteria,1MZ5B@1224|Proteobacteria,2UBD8@28211|Alphaproteobacteria,43YDW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	-	-	-	ko:K03530	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_1649384_1	1280947.HY30_14990	3.14e-213	674.0	COG3200@1|root,COG3200@2|Bacteria,1MUWF@1224|Proteobacteria,2TR0E@28211|Alphaproteobacteria,43WDW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	phospho-2-dehydro-3-deoxyheptonate aldolase	dhs	GO:0003674,GO:0003824,GO:0003849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009611,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0050896,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.54	ko:K01626	ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024	M00022	R01826	RC00435	ko00000,ko00001,ko00002,ko01000	-	-	-	DAHP_synth_2
DYD3_k127_1649384_21	1123054.KB907713_gene591	4.999e-30	128.0	2E3UE@1|root,32YRS@2|Bacteria,1N75A@1224|Proteobacteria,1S9W5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF2799)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2799
DYD3_k127_1649384_25	1385935.N836_17555	7.291e-18	94.0	29CTQ@1|root,2ZZRV@2|Bacteria,1G64I@1117|Cyanobacteria	1117|Cyanobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1649384_12	1280946.HY29_06110	3.821e-80	285.0	COG1192@1|root,COG1192@2|Bacteria,1QJU3@1224|Proteobacteria,2U9YC@28211|Alphaproteobacteria,44062@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	COG1192 ATPases involved in chromosome partitioning	-	-	-	-	-	-	-	-	-	-	-	-	AAA_31,TIR_2
DYD3_k127_1649384_20	551275.KB899544_gene1679	6.562e-33	141.0	COG1192@1|root,COG1192@2|Bacteria,1N449@1224|Proteobacteria,2UEVC@28211|Alphaproteobacteria,440ZD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Anion-transporting ATPase	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
DYD3_k127_1649384_3	394221.Mmar10_0973	2.291e-189	601.0	COG1249@1|root,COG1249@2|Bacteria,1MU2Z@1224|Proteobacteria,2TQS7@28211|Alphaproteobacteria,43WPW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family	gor	GO:0000166,GO:0000302,GO:0000305,GO:0003674,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0017076,GO:0019725,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0065008,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700	1.8.1.7	ko:K00383	ko00480,ko04918,map00480,map04918	-	R00094,R00115	RC00011	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_dim
DYD3_k127_1649384_34	1122218.KB893653_gene628	6.187e-05	52.0	299QT@1|root,2ZWT1@2|Bacteria,1Q8QX@1224|Proteobacteria,2UXQ0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2059)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2059
DYD3_k127_1649384_13	1122613.ATUP01000001_gene2384	1.86e-70	246.0	COG0120@1|root,COG0120@2|Bacteria,1MVGR@1224|Proteobacteria,2TU68@28211|Alphaproteobacteria,43WBG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate	rpiA	-	2.7.1.12,5.3.1.6	ko:K00851,ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167,M00580	R01056,R01737	RC00002,RC00017,RC00434	ko00000,ko00001,ko00002,ko01000	-	-	-	Rib_5-P_isom_A
DYD3_k127_1649384_7	1161401.ASJA01000001_gene511	1.444e-156	507.0	COG1207@1|root,COG1207@2|Bacteria,1MUPH@1224|Proteobacteria,2TQPS@28211|Alphaproteobacteria,43W87@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain	glmU	-	2.3.1.157,2.7.7.23	ko:K04042,ko:K11528	ko00520,ko01100,ko01130,map00520,map01100,map01130	M00362	R00416,R05332	RC00002,RC00004,RC00166	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,NTP_transf_3
DYD3_k127_1649384_18	394221.Mmar10_0969	1.604e-45	188.0	COG0546@1|root,COG0546@2|Bacteria,1RDDY@1224|Proteobacteria,2U79T@28211|Alphaproteobacteria,43XUU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Phosphoglycolate phosphatase	gph	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
DYD3_k127_1649384_23	551789.ATVJ01000002_gene2758	4.509e-24	106.0	2FJXC@1|root,34BJT@2|Bacteria,1P3X9@1224|Proteobacteria,2UVIQ@28211|Alphaproteobacteria,43YI8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1649384_19	1449049.JONW01000005_gene927	4.66e-44	171.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,2UBV3@28211|Alphaproteobacteria,2KJJN@204458|Caulobacterales	204458|Caulobacterales	M	COG3209 Rhs family protein	-	-	-	-	-	-	-	-	-	-	-	-	RHS_repeat
DYD3_k127_1649384_0	745310.G432_07745	1.057e-252	832.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,2UBV3@28211|Alphaproteobacteria,2K32E@204457|Sphingomonadales	204457|Sphingomonadales	M	RHS Repeat	-	-	-	-	-	-	-	-	-	-	-	-	LysM,RHS_repeat
DYD3_k127_1649384_32	1282361.ABAC402_14085	4.384e-06	54.0	COG3209@1|root,COG3209@2|Bacteria,1NKW2@1224|Proteobacteria	1224|Proteobacteria	M	RHS Repeat	-	-	-	-	-	-	-	-	-	-	-	-	RHS_repeat
DYD3_k127_1649384_9	314254.OA2633_03826	1.569e-104	359.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,2TV76@28211|Alphaproteobacteria,43ZWZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	type II secretion system protein	-	-	-	ko:K02455,ko:K02653	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	T2SSF
DYD3_k127_1649384_5	314254.OA2633_03831	1.274e-170	557.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2TRMU@28211|Alphaproteobacteria,43ZIM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	Type II secretion system (T2SS), protein E, N-terminal domain	gspE	-	-	ko:K02454	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSE,T2SSE_N
DYD3_k127_1649384_28	272568.GDI0480	1.772e-08	65.0	COG1989@1|root,COG1989@2|Bacteria,1MUZF@1224|Proteobacteria,2UAW0@28211|Alphaproteobacteria,2JUIM@204441|Rhodospirillales	204441|Rhodospirillales	NOU	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	-	-	3.4.23.43	ko:K02654	-	M00331	-	-	ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2	-	-	DiS_P_DiS,Peptidase_A24
DYD3_k127_1649384_17	314254.OA2633_03836	1.108e-45	169.0	COG2165@1|root,COG2165@2|Bacteria,1RDX2@1224|Proteobacteria,2U7GY@28211|Alphaproteobacteria,43YC1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Type II secretion system (T2SS), protein G	-	-	-	ko:K02456	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl,T2SSG
DYD3_k127_1649384_6	314254.OA2633_03846	1.088e-162	537.0	COG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,2TT8A@28211|Alphaproteobacteria,43XBK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	secretion system protein	gspD	-	-	ko:K02453	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	Secretin,Secretin_N
DYD3_k127_1649384_30	1282361.ABAC402_14085	7.264e-07	58.0	COG3209@1|root,COG3209@2|Bacteria,1NKW2@1224|Proteobacteria	1224|Proteobacteria	M	RHS Repeat	-	-	-	-	-	-	-	-	-	-	-	-	RHS_repeat
DYD3_k127_1649384_31	392500.Swoo_1489	3.436e-06	55.0	2FJ8J@1|root,34AYM@2|Bacteria,1P2ZZ@1224|Proteobacteria,1SSI3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1649384_27	392500.Swoo_1489	3.24e-12	71.0	2FJ8J@1|root,34AYM@2|Bacteria,1P2ZZ@1224|Proteobacteria,1SSI3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1649384_33	1280946.HY29_18035	4.545e-05	51.0	COG3209@1|root,COG3209@2|Bacteria,1NKW2@1224|Proteobacteria	1224|Proteobacteria	M	RHS Repeat	-	-	-	-	-	-	-	-	-	-	-	-	RHS_repeat
DYD3_k127_1649384_4	745310.G432_07745	6.896e-171	579.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,2UBV3@28211|Alphaproteobacteria,2K32E@204457|Sphingomonadales	204457|Sphingomonadales	M	RHS Repeat	-	-	-	-	-	-	-	-	-	-	-	-	LysM,RHS_repeat
DYD3_k127_1649895_11	1161401.ASJA01000014_gene1114	1.608e-49	179.0	COG0228@1|root,COG0228@2|Bacteria,1MZCT@1224|Proteobacteria,2U94X@28211|Alphaproteobacteria,43XTZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bS16 family	rpsP	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02959	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S16
DYD3_k127_1649895_2	1121123.AUAO01000001_gene1559	7.897e-171	555.0	COG0541@1|root,COG0541@2|Bacteria,1MVIA@1224|Proteobacteria,2TQSW@28211|Alphaproteobacteria,2KFSK@204458|Caulobacterales	204458|Caulobacterales	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	ffh	-	3.6.5.4	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko01000,ko02044	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9	-	-	SRP54,SRP54_N,SRP_SPB
DYD3_k127_1649895_7	83219.PM02_10610	1.991e-76	269.0	COG1893@1|root,COG1893@2|Bacteria,1N0M5@1224|Proteobacteria,2TTAN@28211|Alphaproteobacteria,3ZVU5@60136|Sulfitobacter	28211|Alphaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	-	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
DYD3_k127_1649895_16	1134912.AJTV01000025_gene2720	5.087e-11	72.0	COG1652@1|root,COG1652@2|Bacteria,1N3P8@1224|Proteobacteria,2U04V@28211|Alphaproteobacteria,371G5@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Lysin motif	-	-	-	-	-	-	-	-	-	-	-	-	BON,LysM
DYD3_k127_1649895_4	551275.KB899546_gene2030	1.054e-153	499.0	COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,2TRET@28211|Alphaproteobacteria,43X36@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family	-	-	-	-	-	-	-	-	-	-	-	-	SDF
DYD3_k127_1649895_15	1088721.NSU_1590	6.076e-17	86.0	2FFKQ@1|root,347I4@2|Bacteria,1P8PF@1224|Proteobacteria,2UYV6@28211|Alphaproteobacteria,2KAJJ@204457|Sphingomonadales	204457|Sphingomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_1649895_1	493475.GARC_0375	1.535e-261	822.0	COG1505@1|root,COG1505@2|Bacteria,1NZ7N@1224|Proteobacteria,1T1KJ@1236|Gammaproteobacteria,46621@72275|Alteromonadaceae	1236|Gammaproteobacteria	E	COG1505 Serine proteases of the peptidase family S9A	-	-	3.4.21.26	ko:K01322	ko04614,map04614	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S9,Peptidase_S9_N
DYD3_k127_1649895_6	551275.KB899546_gene2038	7.893e-107	353.0	COG0253@1|root,COG0253@2|Bacteria,1MWDH@1224|Proteobacteria,2TUF2@28211|Alphaproteobacteria,43W8N@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	dapF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.1.1.7	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00527	R02735	RC00302	ko00000,ko00001,ko00002,ko01000	-	-	-	DAP_epimerase
DYD3_k127_1649895_0	1038859.AXAU01000004_gene4690	0.0	1251.0	COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,2TQJ7@28211|Alphaproteobacteria,3JRQT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity	katG	GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748	1.11.1.21	ko:K03782	ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110	-	R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906	RC00034,RC00213,RC00767,RC02141	ko00000,ko00001,ko01000	-	-	-	peroxidase
DYD3_k127_1649895_8	1095769.CAHF01000006_gene1907	9.218e-75	261.0	COG0697@1|root,COG0697@2|Bacteria,1MXJ6@1224|Proteobacteria,2VIA7@28216|Betaproteobacteria,4770B@75682|Oxalobacteraceae	28216|Betaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_1649895_3	414684.RC1_2196	2.518e-170	546.0	COG0621@1|root,COG0621@2|Bacteria,1MUCS@1224|Proteobacteria,2TRYD@28211|Alphaproteobacteria,2JPRM@204441|Rhodospirillales	204441|Rhodospirillales	J	Uncharacterized protein family UPF0004	-	-	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
DYD3_k127_1649895_5	394221.Mmar10_2853	8.501e-115	390.0	COG0552@1|root,COG0552@2|Bacteria,1MUDU@1224|Proteobacteria,2TS0M@28211|Alphaproteobacteria,43X6I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	ftsY	-	-	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2,3.A.5.7	-	-	SRP54,SRP54_N
DYD3_k127_1649895_18	1907.SGLAU_18350	4.801e-09	68.0	COG2319@1|root,COG2319@2|Bacteria,2GJN3@201174|Actinobacteria	201174|Actinobacteria	F	WD-40 repeat	-	-	-	ko:K20332	ko02024,map02024	-	-	-	ko00000,ko00001	-	-	-	Pkinase,TIR_2,WD40
DYD3_k127_1649895_10	1161401.ASJA01000014_gene1095	1.49e-57	209.0	COG2917@1|root,COG2917@2|Bacteria,1NWIZ@1224|Proteobacteria,2U74X@28211|Alphaproteobacteria,43Y0Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	probably involved in intracellular septation	ispZ	-	-	ko:K06190	-	-	-	-	ko00000	-	-	-	IspA
DYD3_k127_1649895_13	450851.PHZ_c0868	5.2e-36	150.0	2DB5F@1|root,32TWS@2|Bacteria,1N5ST@1224|Proteobacteria,2UDFF@28211|Alphaproteobacteria,2KIJ9@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1649895_12	1123503.KB908056_gene1952	5.274e-39	155.0	COG1846@1|root,COG1846@2|Bacteria,1RJPG@1224|Proteobacteria,2TUJP@28211|Alphaproteobacteria,2KGQ2@204458|Caulobacterales	204458|Caulobacterales	K	MarR family	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_1649895_9	69395.JQLZ01000009_gene1911	5.264e-67	235.0	COG0755@1|root,COG0755@2|Bacteria,1MU61@1224|Proteobacteria,2TSW8@28211|Alphaproteobacteria,2KF9U@204458|Caulobacterales	204458|Caulobacterales	U	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes	ccmC	-	-	ko:K02195	ko02010,map02010	M00259	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.107	-	-	Cytochrom_C_asm
DYD3_k127_1649895_17	1038859.AXAU01000010_gene1840	2.54e-09	68.0	2ANQE@1|root,31DQ0@2|Bacteria,1MWJD@1224|Proteobacteria,2TTQI@28211|Alphaproteobacteria,3JRIK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3298)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3298,DUF4163
DYD3_k127_1649895_14	1123503.KB908056_gene1947	8.198e-25	114.0	COG2386@1|root,COG2386@2|Bacteria,1NJB0@1224|Proteobacteria,2TUSG@28211|Alphaproteobacteria,2KGG3@204458|Caulobacterales	204458|Caulobacterales	U	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes	ccmB	-	-	ko:K02194	ko02010,map02010	M00259	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.107	-	-	CcmB
DYD3_k127_1649895_20	394221.Mmar10_2860	0.0002177	44.0	COG4133@1|root,COG4133@2|Bacteria,1MZPC@1224|Proteobacteria,2TVBT@28211|Alphaproteobacteria,43Y5R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system	ccmA	-	3.6.3.41	ko:K02193	ko02010,map02010	M00259	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.107	-	-	ABC_tran
DYD3_k127_1683134_11	228405.HNE_1718	7.015e-06	53.0	COG3311@1|root,COG3311@2|Bacteria	2|Bacteria	K	DNA excision	-	-	-	-	-	-	-	-	-	-	-	-	Phage_AlpA
DYD3_k127_1683134_9	228405.HNE_1428	1.871e-22	106.0	COG3620@1|root,COG3620@2|Bacteria,1NAUI@1224|Proteobacteria,2UH7J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_1683134_3	1248917.ANFX01000028_gene2198	1.505e-169	542.0	COG3550@1|root,COG3550@2|Bacteria,1MVAB@1224|Proteobacteria,2U1TN@28211|Alphaproteobacteria,2K42M@204457|Sphingomonadales	204457|Sphingomonadales	S	HipA-like C-terminal domain	-	-	2.7.11.1	ko:K07154	-	-	-	-	ko00000,ko01000,ko01001,ko02048	-	-	-	Couple_hipA,HipA_C
DYD3_k127_1683134_10	452637.Oter_1870	1.348e-18	98.0	29AYY@1|root,2ZXXY@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1683134_4	366602.Caul_3362	9.056e-145	482.0	COG1680@1|root,COG1680@2|Bacteria,1PQ2Z@1224|Proteobacteria,2U2RD@28211|Alphaproteobacteria,2KFJC@204458|Caulobacterales	204458|Caulobacterales	V	beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_1683134_8	1112212.JH584235_gene3564	5.948e-37	153.0	COG0789@1|root,COG0789@2|Bacteria,1MWN0@1224|Proteobacteria,2UCJC@28211|Alphaproteobacteria,2K3X8@204457|Sphingomonadales	204457|Sphingomonadales	K	helix_turn_helix, mercury resistance	-	-	-	-	-	-	-	-	-	-	-	-	MerR_1
DYD3_k127_1683134_2	1123240.ATVO01000003_gene459	1.654e-182	587.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,2K0TE@204457|Sphingomonadales	204457|Sphingomonadales	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	6.2.1.44	ko:K00666,ko:K20034	ko00920,map00920	-	R10820	RC00004,RC00014	ko00000,ko00001,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_1683134_0	1121123.AUAO01000002_gene199	1.723e-244	763.0	COG0388@1|root,COG3153@1|root,COG0388@2|Bacteria,COG3153@2|Bacteria,1MX4I@1224|Proteobacteria,2TVMQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,CN_hydrolase
DYD3_k127_1683134_1	1502850.FG91_00802	5.972e-220	707.0	COG1629@1|root,COG4771@2|Bacteria,1QYDM@1224|Proteobacteria,2TXPM@28211|Alphaproteobacteria,2K1U8@204457|Sphingomonadales	204457|Sphingomonadales	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_1683134_6	1121943.KB900007_gene1925	5.702e-102	342.0	COG1840@1|root,COG1840@2|Bacteria,1MUEG@1224|Proteobacteria,1RQ6Z@1236|Gammaproteobacteria,1XHSC@135619|Oceanospirillales	135619|Oceanospirillales	P	Iron deficiency-induced protein A	-	-	-	ko:K02012	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.10	-	-	SBP_bac_6,SBP_bac_8
DYD3_k127_1683134_5	1122613.ATUP01000001_gene2377	1.26e-122	412.0	COG1178@1|root,COG1178@2|Bacteria,1MWEV@1224|Proteobacteria,2TSTS@28211|Alphaproteobacteria,43X24@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG1178 ABC-type Fe3 transport system, permease component	sfuB	-	-	ko:K02011	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.10	-	-	BPD_transp_1
DYD3_k127_1683134_7	1161401.ASJA01000001_gene505	8.291e-89	324.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,43XEU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	fbpC	-	3.6.3.30	ko:K02010	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.10	-	-	ABC_tran,TOBE_2
DYD3_k127_1685942_0	1101190.ARWB01000001_gene3740	7.612e-114	376.0	COG1194@1|root,COG1194@2|Bacteria,1MUD4@1224|Proteobacteria,2TQVX@28211|Alphaproteobacteria,36XFF@31993|Methylocystaceae	28211|Alphaproteobacteria	L	FES	mutY	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	-	ko:K03575	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	EndIII_4Fe-2S,HhH-GPD,NUDIX_4
DYD3_k127_1685942_1	1236959.BAMT01000015_gene2854	1.059e-06	58.0	2FIXR@1|root,312JV@2|Bacteria,1NBAI@1224|Proteobacteria,2W83G@28216|Betaproteobacteria,2KNQ3@206350|Nitrosomonadales	206350|Nitrosomonadales	S	Cytochrome C'	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C_2
DYD3_k127_1699275_4	1161401.ASJA01000003_gene2900	3.513e-27	117.0	COG3266@1|root,COG3266@2|Bacteria,1R2JF@1224|Proteobacteria,2TZKQ@28211|Alphaproteobacteria,43YH1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1699275_1	1333998.M2A_3057	1.456e-179	573.0	COG0823@1|root,COG0823@2|Bacteria,1MV09@1224|Proteobacteria,2TR03@28211|Alphaproteobacteria,4BPJM@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	U	Involved in the TonB-independent uptake of proteins	tolB	-	-	ko:K03641	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	PD40,TolB_N
DYD3_k127_1699275_3	1122613.ATUP01000001_gene940	2.069e-49	181.0	COG2885@1|root,COG2885@2|Bacteria,1MZTV@1224|Proteobacteria,2U758@28211|Alphaproteobacteria,43XZZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	pal	-	-	ko:K03640	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	OmpA
DYD3_k127_1699275_5	1121948.AUAC01000003_gene2650	7.657e-20	101.0	COG1729@1|root,COG1729@2|Bacteria,1MUSV@1224|Proteobacteria,2U6ZQ@28211|Alphaproteobacteria,43XWU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division	cpoB	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_6,TolA_bind_tri
DYD3_k127_1699275_2	394221.Mmar10_2413	1.476e-51	200.0	COG0037@1|root,COG0037@2|Bacteria,1MU85@1224|Proteobacteria,2TRK1@28211|Alphaproteobacteria,43XU4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine	tilS	-	6.3.4.19	ko:K04075	-	-	R09597	RC02633,RC02634	ko00000,ko01000,ko03016	-	-	-	ATP_bind_3
DYD3_k127_1699275_0	1187851.A33M_2061	1.973e-272	846.0	COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,2TSYQ@28211|Alphaproteobacteria,3FCPT@34008|Rhodovulum	28211|Alphaproteobacteria	O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	ftsH	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,FtsH_ext,Peptidase_M41
DYD3_k127_1705889_3	1038858.AXBA01000015_gene2071	1.191e-144	486.0	COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,2TR8K@28211|Alphaproteobacteria,3F0P9@335928|Xanthobacteraceae	28211|Alphaproteobacteria	M	Mycolic acid cyclopropane synthetase	cfaS	-	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	CMAS
DYD3_k127_1705889_5	1038858.AXBA01000015_gene2072	2.172e-84	301.0	COG3496@1|root,COG3496@2|Bacteria,1RC56@1224|Proteobacteria,2TUX0@28211|Alphaproteobacteria,3F0WH@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1365)	-	-	-	ko:K09701	-	-	-	-	ko00000	-	-	-	DUF1365
DYD3_k127_1705889_0	1038858.AXBA01000015_gene2073	1.313e-172	558.0	COG2907@1|root,COG2907@2|Bacteria,1MV4Z@1224|Proteobacteria,2TQUH@28211|Alphaproteobacteria,3F14F@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Flavin containing amine oxidoreductase	-	-	-	ko:K06954	-	-	-	-	ko00000	-	-	-	Amino_oxidase
DYD3_k127_1705889_7	438753.AZC_4109	4.089e-61	219.0	COG1595@1|root,COG1595@2|Bacteria,1RHRR@1224|Proteobacteria,2U9G0@28211|Alphaproteobacteria,3EZDB@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Sigma-70, region 4	rpoE	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4,Sigma70_r4_2
DYD3_k127_1705889_6	1168059.KB899087_gene3777	4.107e-72	250.0	COG3806@1|root,COG3806@2|Bacteria,1RI6T@1224|Proteobacteria,2TVH9@28211|Alphaproteobacteria,3F1I5@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	ChrR Cupin-like domain	chrR	-	-	ko:K07167	-	-	-	-	ko00000	-	-	-	Cupin_7,zf-HC2
DYD3_k127_1705889_4	935548.KI912159_gene2557	3.146e-103	342.0	COG3752@1|root,COG3752@2|Bacteria,1MXCP@1224|Proteobacteria,2TTEP@28211|Alphaproteobacteria,43MD2@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	3-oxo-5-alpha-steroid 4-dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	DUF1295
DYD3_k127_1705889_1	1040983.AXAE01000009_gene5423	8.393e-155	495.0	COG2230@1|root,COG2230@2|Bacteria,1MUW5@1224|Proteobacteria,2U0A4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	cyclopropane-fatty-acyl-phospholipid synthase	-	-	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	CMAS
DYD3_k127_1705889_8	883080.HMPREF9697_02432	2.993e-43	166.0	COG4852@1|root,COG4852@2|Bacteria,1MZHP@1224|Proteobacteria,2UBSF@28211|Alphaproteobacteria,3K0TU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2177)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2177
DYD3_k127_1705889_2	1336208.JADY01000010_gene3315	1.161e-146	479.0	COG0412@1|root,COG0412@2|Bacteria,1QV1D@1224|Proteobacteria,2TWBD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Tannase and feruloyl esterase	-	-	3.1.1.102	ko:K21105	-	-	R11541	RC00020,RC00041	ko00000,ko01000	-	-	-	Tannase
DYD3_k127_1706762_2	935863.AWZR01000001_gene1762	1.569e-59	222.0	29M6H@1|root,3083Y@2|Bacteria,1RJTC@1224|Proteobacteria,1T7NK@1236|Gammaproteobacteria,1X9GZ@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1706762_1	1280949.HAD_15507	3.687e-182	578.0	COG0468@1|root,COG0468@2|Bacteria,1MU3C@1224|Proteobacteria,2TRPR@28211|Alphaproteobacteria,43W8I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	recA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071496	-	ko:K03553	ko03440,map03440	M00729	-	-	ko00000,ko00001,ko00002,ko03400	-	-	-	RecA
DYD3_k127_1706762_0	314254.OA2633_04771	0.0	1177.0	COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,2TQV4@28211|Alphaproteobacteria,43X02@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
DYD3_k127_1706762_3	1411123.JQNH01000001_gene1167	5.276e-28	114.0	COG3293@1|root,COG3293@2|Bacteria,1P5HD@1224|Proteobacteria,2TUQI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Transposase and inactivated	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2,DUF4096
DYD3_k127_1732590_0	551789.ATVJ01000002_gene3144	4.776e-181	584.0	COG0664@1|root,COG1752@1|root,COG0664@2|Bacteria,COG1752@2|Bacteria,1MUM9@1224|Proteobacteria,2TVQR@28211|Alphaproteobacteria,43WZP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin,cNMP_binding
DYD3_k127_1732590_1	1161401.ASJA01000018_gene1216	1.651e-101	341.0	COG1024@1|root,COG1024@2|Bacteria,1MVEC@1224|Proteobacteria,2TRPS@28211|Alphaproteobacteria,43W8K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	MA20_40175	-	4.2.1.18,4.2.1.57	ko:K13766,ko:K13779	ko00280,ko00281,ko01100,map00280,map00281,map01100	M00036	R02085,R03493	RC00941,RC02416	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD3_k127_1732590_3	314285.KT71_15676	6.209e-32	140.0	COG0454@1|root,COG0456@2|Bacteria,1N1SW@1224|Proteobacteria,1SFAF@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD3_k127_1732590_2	519989.ECTPHS_04453	1.578e-60	229.0	COG1842@1|root,COG1842@2|Bacteria,1QW5I@1224|Proteobacteria	1224|Proteobacteria	KT	N-terminal domain of unknown function (DUF4140)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4139,DUF4140
DYD3_k127_176128_2	1247963.JPHU01000015_gene1155	8.696e-106	353.0	COG0627@1|root,COG0627@2|Bacteria,1QIRQ@1224|Proteobacteria,2TUU5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Putative esterase	-	-	-	-	-	-	-	-	-	-	-	-	Esterase
DYD3_k127_176128_3	366602.Caul_1487	8.514e-59	213.0	COG4122@1|root,COG4122@2|Bacteria,1RJH7@1224|Proteobacteria,2UBFV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24
DYD3_k127_176128_1	366602.Caul_4896	1.583e-112	375.0	COG1236@1|root,COG1236@2|Bacteria,1MV7U@1224|Proteobacteria,2TQU5@28211|Alphaproteobacteria,2KFM2@204458|Caulobacterales	204458|Caulobacterales	J	exonuclease of the beta-lactamase fold involved in RNA processing	-	-	-	ko:K07577	-	-	-	-	ko00000	-	-	-	Lactamase_B
DYD3_k127_176128_6	1552123.EP57_14260	5.787e-07	59.0	COG3338@1|root,COG3338@2|Bacteria,1V16J@1239|Firmicutes,4HA62@91061|Bacilli	91061|Bacilli	P	carbonic anhydrase	cah	-	4.2.1.1	ko:K01674	ko00910,map00910	-	R00132,R10092	RC02807	ko00000,ko00001,ko01000	-	-	-	Carb_anhydrase
DYD3_k127_176128_4	331869.BAL199_23427	5.253e-45	184.0	COG1280@1|root,COG1280@2|Bacteria,1R5K2@1224|Proteobacteria,2U1GA@28211|Alphaproteobacteria,4BTDJ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	LysE type translocator	-	GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0042968,GO:0042970,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039	-	-	-	-	-	-	-	-	-	-	LysE
DYD3_k127_176128_0	1121949.AQXT01000002_gene2636	1.453e-207	669.0	COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,2TR7V@28211|Alphaproteobacteria,43W5G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DEAD DEAH box helicase	lhr	-	-	ko:K03724	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DEAD,DEAD_assoc,Helicase_C
DYD3_k127_1779744_1	1509405.GV67_10725	2.1e-118	392.0	COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,2TTC7@28211|Alphaproteobacteria,4B8CG@82115|Rhizobiaceae	28211|Alphaproteobacteria	M	UDP-glucose 4-epimerase	exoB	-	5.1.3.2,5.1.3.5	ko:K01784,ko:K12448	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R01473,R02984	RC00289,RC00528	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_1779744_2	228405.HNE_0870	9.628e-08	63.0	2FKQY@1|root,34CBE@2|Bacteria,1PAYA@1224|Proteobacteria,2UVZR@28211|Alphaproteobacteria,43YIH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2219)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2219
DYD3_k127_1779744_0	332101.JIBU02000013_gene1277	1.264e-128	420.0	COG0037@1|root,COG0037@2|Bacteria,1V1S0@1239|Firmicutes,24BSC@186801|Clostridia,36GC2@31979|Clostridiaceae	186801|Clostridia	D	tRNA processing	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1824024_13	394221.Mmar10_2958	1.624e-06	53.0	COG5468@1|root,COG5468@2|Bacteria	2|Bacteria	S	Lipopolysaccharide-assembly	-	-	-	ko:K03643	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	LptE
DYD3_k127_1824024_0	1161401.ASJA01000002_gene2725	0.0	1272.0	COG0495@1|root,COG0495@2|Bacteria,1MV47@1224|Proteobacteria,2TQPK@28211|Alphaproteobacteria,43X47@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm	leuS	GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.4	ko:K01869	ko00970,map00970	M00359,M00360	R03657	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Anticodon_1,tRNA-synt_1,tRNA-synt_1_2
DYD3_k127_1824024_9	1382303.JPOM01000001_gene326	3.209e-37	146.0	2C2J5@1|root,315UG@2|Bacteria,1RHAH@1224|Proteobacteria,2U94W@28211|Alphaproteobacteria,2KGNX@204458|Caulobacterales	204458|Caulobacterales	S	Domain of unknown function (DUF3576)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3576
DYD3_k127_1824024_7	1297569.MESS2_620009	9.792e-59	214.0	COG0500@1|root,COG2226@2|Bacteria,1N2SK@1224|Proteobacteria,2UAQD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_1824024_10	69395.JQLZ01000010_gene4167	5.695e-34	140.0	COG0352@1|root,COG0352@2|Bacteria,1N908@1224|Proteobacteria,2VEZB@28211|Alphaproteobacteria,2KJUP@204458|Caulobacterales	204458|Caulobacterales	H	Thiamine monophosphate synthase	-	-	-	-	-	-	-	-	-	-	-	-	TMP-TENI
DYD3_k127_1824024_5	1121123.AUAO01000002_gene218	1.917e-85	288.0	COG0325@1|root,COG0325@2|Bacteria,1MWN7@1224|Proteobacteria,2TR5Z@28211|Alphaproteobacteria,2KFJ9@204458|Caulobacterales	204458|Caulobacterales	S	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	-	-	-	ko:K06997	-	-	-	-	ko00000	-	-	-	Ala_racemase_N
DYD3_k127_1824024_2	394221.Mmar10_2950	7.114e-104	344.0	COG0745@1|root,COG0745@2|Bacteria,1MU3A@1224|Proteobacteria,2TR97@28211|Alphaproteobacteria,43WA6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	mtrA	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1824024_4	1123503.KB908056_gene2105	1.486e-89	302.0	COG0708@1|root,COG0708@2|Bacteria,1MVMC@1224|Proteobacteria,2TRWQ@28211|Alphaproteobacteria,2KFIY@204458|Caulobacterales	204458|Caulobacterales	L	exodeoxyribonuclease III	-	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
DYD3_k127_1824024_6	450851.PHZ_c1163	1.359e-65	243.0	COG0642@1|root,COG0784@1|root,COG2202@1|root,COG2203@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TWFB@28211|Alphaproteobacteria,2KFH9@204458|Caulobacterales	204458|Caulobacterales	T	histidine kinase A domain protein	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_3,Response_reg
DYD3_k127_1824024_8	314254.OA2633_10154	2.476e-55	203.0	2BGD9@1|root,32XCX@2|Bacteria,1N45P@1224|Proteobacteria,2UCC1@28211|Alphaproteobacteria,43ZIQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1824024_11	1161401.ASJA01000002_gene2733	1.662e-31	133.0	COG2834@1|root,COG2834@2|Bacteria,1RA1S@1224|Proteobacteria,2U58W@28211|Alphaproteobacteria,43Y3E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)	lolA	-	-	-	-	-	-	-	-	-	-	-	LolA
DYD3_k127_1824024_1	1458275.AZ34_05010	1.511e-245	780.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2VIQR@28216|Betaproteobacteria,4AB9T@80864|Comamonadaceae	28216|Betaproteobacteria	P	TonB-dependent receptor plug	piuA	-	-	ko:K16090	-	-	-	-	ko00000,ko02000	1.B.14.1.11	-	-	Plug,TonB_dep_Rec
DYD3_k127_1824024_3	194867.ALBQ01000019_gene3672	9.252e-97	326.0	COG3128@1|root,COG3128@2|Bacteria,1MUI7@1224|Proteobacteria,2TRH2@28211|Alphaproteobacteria,2JZZU@204457|Sphingomonadales	204457|Sphingomonadales	S	PKHD-type hydroxylase	-	-	-	ko:K07336	-	-	-	-	ko00000,ko01000	-	-	-	2OG-FeII_Oxy_3
DYD3_k127_183380_1	1380391.JIAS01000003_gene1812	2.927e-39	161.0	COG0741@1|root,COG0741@2|Bacteria,1MUMA@1224|Proteobacteria,2TSA5@28211|Alphaproteobacteria,2JSV4@204441|Rhodospirillales	204441|Rhodospirillales	M	transglycosylase	-	-	-	-	-	-	-	-	-	-	-	-	SLT
DYD3_k127_183380_0	448385.sce7110	2.39e-102	346.0	COG0454@1|root,COG0456@2|Bacteria,1PWDA@1224|Proteobacteria,43586@68525|delta/epsilon subdivisions,2WZJ8@28221|Deltaproteobacteria,2Z296@29|Myxococcales	28221|Deltaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_183380_7	234267.Acid_7343	3.145e-20	99.0	COG0666@1|root,COG0666@2|Bacteria,3Y86V@57723|Acidobacteria	57723|Acidobacteria	S	Ankyrin repeat	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2,Ank_3
DYD3_k127_183380_5	627192.SLG_12210	1.876e-29	130.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_183380_9	555793.WSK_3235	8.134e-09	67.0	2EVK9@1|root,33P0C@2|Bacteria,1P9RH@1224|Proteobacteria,2UVJR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_183380_4	1429916.X566_06880	1.077e-34	147.0	COG4961@1|root,COG4961@2|Bacteria,1N744@1224|Proteobacteria,2UGR2@28211|Alphaproteobacteria,3JUY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TadE-like protein	-	-	-	-	-	-	-	-	-	-	-	-	TadE
DYD3_k127_183380_2	1161401.ASJA01000026_gene13	1.104e-37	149.0	COG4961@1|root,COG4961@2|Bacteria,1N3XK@1224|Proteobacteria,2UBRJ@28211|Alphaproteobacteria,43XYP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	TadE-like protein	-	-	-	ko:K02651	ko04112,map04112	-	-	-	ko00000,ko00001,ko02035,ko02044	-	-	-	TadE
DYD3_k127_183380_6	1161401.ASJA01000026_gene15	1.027e-21	103.0	COG4964@1|root,COG4964@2|Bacteria,1R3QI@1224|Proteobacteria,2UGFC@28211|Alphaproteobacteria,43YJ8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	COG4964 Flp pilus assembly protein, secretin CpaC	pilQ	-	-	-	-	-	-	-	-	-	-	-	T2SS-T3SS_pil_N
DYD3_k127_183380_8	1144312.PMI09_04077	1.839e-17	83.0	COG3847@1|root,COG3847@2|Bacteria,1NGVU@1224|Proteobacteria,2UJE8@28211|Alphaproteobacteria,4BGUV@82115|Rhizobiaceae	28211|Alphaproteobacteria	U	Flp pilus assembly protein, pilin Flp	pilA	-	-	ko:K02651	ko04112,map04112	-	-	-	ko00000,ko00001,ko02035,ko02044	-	-	-	Flp_Fap
DYD3_k127_183380_3	1229204.AMYY01000024_gene2952	2.653e-35	143.0	COG4960@1|root,COG4960@2|Bacteria,1RAYG@1224|Proteobacteria,2TSVX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	OU	Peptidase A24A, prepilin type IV	cpaA	-	3.4.23.43	ko:K02278	-	-	-	-	ko00000,ko01000,ko02035,ko02044	-	-	-	Peptidase_A24
DYD3_k127_1843394_1	1282360.ABAC460_15075	2.542e-166	535.0	COG1680@1|root,COG1680@2|Bacteria,1P3SQ@1224|Proteobacteria,2TTI5@28211|Alphaproteobacteria,2KGKC@204458|Caulobacterales	204458|Caulobacterales	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_1843394_3	1161401.ASJA01000006_gene1977	8.445e-132	442.0	COG3540@1|root,COG3540@2|Bacteria,1MWAF@1224|Proteobacteria,2U0FQ@28211|Alphaproteobacteria,43WGM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG3540 Phosphodiesterase alkaline phosphatase D	-	-	3.1.3.1	ko:K01077,ko:K01113	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	-	-	-	PhoD,PhoD_N
DYD3_k127_1843394_8	1161401.ASJA01000006_gene1968	7.071e-84	283.0	COG0353@1|root,COG0353@2|Bacteria,1MV9Q@1224|Proteobacteria,2TRZM@28211|Alphaproteobacteria,43XFW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO	recR	-	-	ko:K06187	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecR,Toprim_4
DYD3_k127_1843394_17	930169.B5T_02455	1.565e-33	144.0	2CD0I@1|root,32RWS@2|Bacteria,1N0MC@1224|Proteobacteria,1SABW@1236|Gammaproteobacteria,1XPPR@135619|Oceanospirillales	135619|Oceanospirillales	S	Domain of unknown function (DUF4399)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4399
DYD3_k127_1843394_21	1120956.JHZK01000003_gene283	9.821e-12	70.0	2EGIV@1|root,33AB2@2|Bacteria,1NHS9@1224|Proteobacteria,2UJHH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
DYD3_k127_1843394_12	382464.ABSI01000009_gene4000	3.66e-58	217.0	COG0715@1|root,COG0715@2|Bacteria,46U6U@74201|Verrucomicrobia,2IU8C@203494|Verrucomicrobiae	2|Bacteria	P	Protein of unknown function (DUF3500)	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	DUF3500,VitK2_biosynth
DYD3_k127_1843394_15	190650.CC_0223	4.091e-42	174.0	COG0596@1|root,COG0596@2|Bacteria,1N252@1224|Proteobacteria,2UHSE@28211|Alphaproteobacteria,2KIRM@204458|Caulobacterales	204458|Caulobacterales	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_1843394_18	1415780.JPOG01000001_gene2086	2.733e-33	147.0	COG3000@1|root,COG3000@2|Bacteria,1QU0E@1224|Proteobacteria,1TMF5@1236|Gammaproteobacteria,1XBP6@135614|Xanthomonadales	135614|Xanthomonadales	I	Protein of unknown function (DUF3703)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3703
DYD3_k127_1843394_19	1116472.MGMO_137c00120	5.029e-32	143.0	2CN2H@1|root,32SG5@2|Bacteria,1N4PY@1224|Proteobacteria,1SESE@1236|Gammaproteobacteria,1XGHH@135618|Methylococcales	135618|Methylococcales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1843394_16	1095769.CAHF01000005_gene1535	4.504e-40	158.0	COG2207@1|root,COG2207@2|Bacteria,1N70D@1224|Proteobacteria,2WB3W@28216|Betaproteobacteria,4752J@75682|Oxalobacteraceae	28216|Betaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
DYD3_k127_1843394_20	1282876.BAOK01000001_gene3356	2.112e-23	108.0	COG0718@1|root,COG0718@2|Bacteria,1RGZD@1224|Proteobacteria,2UBQB@28211|Alphaproteobacteria,4BQZ0@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection	ybaB	-	-	ko:K09747	-	-	-	-	ko00000	-	-	-	YbaB_DNA_bd
DYD3_k127_1843394_0	1161401.ASJA01000006_gene1970	1.162e-172	563.0	COG2812@1|root,COG2812@2|Bacteria,1MVCK@1224|Proteobacteria,2TRPB@28211|Alphaproteobacteria,43WI5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	dnaX	-	2.7.7.7	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2,DNA_pol3_gamma3,DUF3646
DYD3_k127_1843394_13	1229205.BUPH_08445	1.659e-56	201.0	COG3791@1|root,COG3791@2|Bacteria,1RFBP@1224|Proteobacteria,2VQN8@28216|Betaproteobacteria,1K88K@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_1843394_9	195105.CN97_13465	1.646e-68	258.0	COG2816@1|root,COG2816@2|Bacteria,1QGCX@1224|Proteobacteria,2TVMG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Belongs to the Nudix hydrolase family	nudC	-	3.6.1.22	ko:K03426	ko00760,ko01100,ko04146,map00760,map01100,map04146	-	R00103,R03004,R11104	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX,NUDIX-like,zf-NADH-PPase
DYD3_k127_1843394_6	78245.Xaut_2629	2.127e-99	344.0	COG0077@1|root,COG0077@2|Bacteria,1MU60@1224|Proteobacteria,2TSUT@28211|Alphaproteobacteria,3EYVX@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Prephenate dehydratase	pheA	-	4.2.1.51	ko:K04518	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024	R00691,R01373	RC00360	ko00000,ko00001,ko00002,ko01000	-	-	-	PDT
DYD3_k127_1843394_7	1282876.BAOK01000001_gene3364	1.239e-89	303.0	COG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,2TUQM@28211|Alphaproteobacteria,4BQ6R@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria	kdsB	-	2.7.7.38	ko:K00979	ko00540,ko01100,map00540,map01100	M00063	R03351,R11396	RC00152,RC00910	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CTP_transf_3
DYD3_k127_1843394_14	1161401.ASJA01000006_gene1859	1.818e-46	175.0	COG3474@1|root,COG3474@2|Bacteria,1RIDN@1224|Proteobacteria,2U142@28211|Alphaproteobacteria,43XYR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG3474 Cytochrome c2	cycM	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_1843394_4	1280944.HY17_09400	7.669e-113	387.0	COG1262@1|root,COG4249@1|root,COG1262@2|Bacteria,COG4249@2|Bacteria,1NQ5K@1224|Proteobacteria,2U2VJ@28211|Alphaproteobacteria,43ZFH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase,Peptidase_C14
DYD3_k127_1843394_11	1282360.ABAC460_15225	8.225e-60	220.0	COG2267@1|root,COG2267@2|Bacteria,1PB1R@1224|Proteobacteria,2TVHB@28211|Alphaproteobacteria,2KIWI@204458|Caulobacterales	204458|Caulobacterales	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
DYD3_k127_1843394_24	1415630.U771_00940	1.892e-06	61.0	COG5305@1|root,COG5305@2|Bacteria,1R9UF@1224|Proteobacteria,1S0JK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
DYD3_k127_1843394_2	551275.KB899544_gene912	7.413e-142	460.0	COG0463@1|root,COG2246@1|root,COG0463@2|Bacteria,COG2246@2|Bacteria,1MV8J@1224|Proteobacteria,2TTYF@28211|Alphaproteobacteria,440E1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	GtrA-like protein	-	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2,GtrA
DYD3_k127_1843394_10	1120792.JAFV01000001_gene987	7.932e-66	235.0	COG3263@1|root,COG3263@2|Bacteria,1MVKV@1224|Proteobacteria,2TSZJ@28211|Alphaproteobacteria,36ZNE@31993|Methylocystaceae	28211|Alphaproteobacteria	P	Sodium/hydrogen exchanger family	cvrA	-	-	ko:K11105	-	-	-	-	ko00000,ko02000	2.A.36.6	-	-	CorC_HlyC,Na_H_Exchanger
DYD3_k127_1884738_9	1041146.ATZB01000058_gene4186	2.095e-06	50.0	COG1670@1|root,COG1670@2|Bacteria,1N6Q1@1224|Proteobacteria,2UG72@28211|Alphaproteobacteria,4BAII@82115|Rhizobiaceae	28211|Alphaproteobacteria	J	Acetyltransferases, including N-acetylases of ribosomal proteins	-	-	2.3.1.128	ko:K03790	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_3
DYD3_k127_1884738_7	1082931.KKY_3161	1.343e-39	148.0	COG0211@1|root,COG0211@2|Bacteria,1MZGH@1224|Proteobacteria,2UBUX@28211|Alphaproteobacteria,3N70Y@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL27 family	rpmA	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02899	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L27
DYD3_k127_1884738_5	744980.TRICHSKD4_1567	3.647e-53	196.0	COG0261@1|root,COG3743@1|root,COG0261@2|Bacteria,COG3743@2|Bacteria,1MZEW@1224|Proteobacteria,2UBT3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	This protein binds to 23S rRNA in the presence of protein L20	rplU	GO:0003674,GO:0003735,GO:0005198	-	ko:K02888	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	HHH_5,Ribosomal_L21p
DYD3_k127_1884738_4	1282362.AEAC466_16455	4.881e-69	239.0	COG4832@1|root,COG4832@2|Bacteria,1RBGY@1224|Proteobacteria,2U72S@28211|Alphaproteobacteria,2KJ62@204458|Caulobacterales	204458|Caulobacterales	S	GyrI-like small molecule binding domain	-	-	-	-	-	-	-	-	-	-	-	-	GyrI-like
DYD3_k127_1884738_6	509190.Cseg_2250	8.737e-41	159.0	COG0560@1|root,COG0560@2|Bacteria,1MXGP@1224|Proteobacteria,2U7SG@28211|Alphaproteobacteria,2KGC8@204458|Caulobacterales	204458|Caulobacterales	E	TIGRFAM HAD-superfamily subfamily IB hydrolase, TIGR01490	-	-	3.1.3.27	ko:K18697	ko00564,map00564	-	R02029	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD
DYD3_k127_1884738_8	194867.ALBQ01000011_gene384	2.005e-10	63.0	COG4206@1|root,COG4206@2|Bacteria,1R47X@1224|Proteobacteria,2TW4W@28211|Alphaproteobacteria,2JZYG@204457|Sphingomonadales	204457|Sphingomonadales	H	receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug
DYD3_k127_1884738_1	1121033.AUCF01000028_gene377	1.27e-116	393.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TQPZ@28211|Alphaproteobacteria,2JQVG@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the peptidase S1C family	-	-	-	-	-	-	-	-	-	-	-	-	PDZ_2,Trypsin_2
DYD3_k127_1884738_3	1038858.AXBA01000010_gene2697	3.466e-79	286.0	COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,2TRTZ@28211|Alphaproteobacteria,3EYK2@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	ragA	GO:0000160,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0006355,GO:0007154,GO:0007165,GO:0008150,GO:0009889,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031326,GO:0035556,GO:0042221,GO:0042802,GO:0046688,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1884738_2	331869.BAL199_27556	1.826e-88	320.0	COG0642@1|root,COG2205@2|Bacteria,1MW8M@1224|Proteobacteria,2TUSJ@28211|Alphaproteobacteria,4BPUS@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	ragB	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
DYD3_k127_1884738_0	627192.SLG_26390	1.94e-126	442.0	COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1QU0Y@1224|Proteobacteria,2TW5W@28211|Alphaproteobacteria,2KEBP@204457|Sphingomonadales	204457|Sphingomonadales	HP	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_1892831_14	566466.NOR53_3417	2.463e-93	318.0	COG0639@1|root,COG0639@2|Bacteria,1QEIM@1224|Proteobacteria,1RZDP@1236|Gammaproteobacteria,1J9C0@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	T	Calcineurin-like phosphoesterase	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
DYD3_k127_1892831_28	291985.CCSI01000007_gene460	5.168e-61	236.0	28M5H@1|root,2ZAJ9@2|Bacteria,1RJY2@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1892831_13	566466.NOR53_1218	1.294e-97	328.0	COG3491@1|root,COG3491@2|Bacteria,1MUNT@1224|Proteobacteria,1RQ5X@1236|Gammaproteobacteria,1J9TC@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	C	Belongs to the iron ascorbate-dependent oxidoreductase family	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy,DIOX_N
DYD3_k127_1892831_11	314285.KT71_18416	2.577e-106	362.0	2CHPA@1|root,33SI9@2|Bacteria,1QQ63@1224|Proteobacteria,1SK0Y@1236|Gammaproteobacteria,1J96G@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1892831_5	1126627.BAWE01000004_gene4302	9.569e-152	497.0	COG0627@1|root,COG0627@2|Bacteria,1MX6W@1224|Proteobacteria,2TSCC@28211|Alphaproteobacteria,3JTMK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tannase and feruloyl esterase	-	-	3.1.1.102	ko:K21105	-	-	R11541	RC00020,RC00041	ko00000,ko01000	-	-	-	Tannase
DYD3_k127_1892831_0	314225.ELI_14570	1.607e-224	734.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_1892831_23	1280950.HJO_13121	2.802e-74	274.0	COG0457@1|root,COG5616@1|root,COG0457@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,43XNB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2,TPR_16,TPR_8,Trans_reg_C
DYD3_k127_1892831_4	1479238.JQMZ01000001_gene2029	3.816e-158	514.0	COG1570@1|root,COG1570@2|Bacteria,1MUA4@1224|Proteobacteria,2TR1R@28211|Alphaproteobacteria,43WKR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	xseA	-	3.1.11.6	ko:K03601	ko03430,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_VII_L,tRNA_anti_2
DYD3_k127_1892831_34	1161401.ASJA01000027_gene29	2.139e-18	87.0	COG3908@1|root,COG3908@2|Bacteria,1N7PA@1224|Proteobacteria,2UFTN@28211|Alphaproteobacteria,43YVB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2093)	MA20_05765	-	-	-	-	-	-	-	-	-	-	-	DUF2093
DYD3_k127_1892831_29	1280944.HY17_04375	1.172e-56	213.0	COG0739@1|root,COG0739@2|Bacteria,1MY2X@1224|Proteobacteria,2U6AR@28211|Alphaproteobacteria,43WE7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_1892831_16	588932.JHOF01000027_gene1761	2.439e-88	302.0	COG0845@1|root,COG0845@2|Bacteria,1R71G@1224|Proteobacteria,2TV4Y@28211|Alphaproteobacteria,2KF14@204458|Caulobacterales	204458|Caulobacterales	M	Secretion protein	-	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_1892831_17	1292034.OR37_01762	2.532e-83	294.0	COG1136@1|root,COG1136@2|Bacteria,1QU8Q@1224|Proteobacteria,2TWD6@28211|Alphaproteobacteria,2KFU9@204458|Caulobacterales	204458|Caulobacterales	V	ABC transporter	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_1892831_10	450851.PHZ_c0884	3.89e-110	369.0	COG0577@1|root,COG0577@2|Bacteria,1NWI3@1224|Proteobacteria,2U2NH@28211|Alphaproteobacteria,2KFQJ@204458|Caulobacterales	204458|Caulobacterales	V	COG0577 ABC-type antimicrobial peptide transport system permease component	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	MacB_PCD
DYD3_k127_1892831_7	629773.AORY01000015_gene1321	1.669e-125	417.0	COG3182@1|root,COG3182@2|Bacteria,1MUX8@1224|Proteobacteria,2TVQ6@28211|Alphaproteobacteria,2K22D@204457|Sphingomonadales	204457|Sphingomonadales	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
DYD3_k127_1892831_32	1131814.JAFO01000001_gene2716	5.473e-36	145.0	COG3932@1|root,COG3932@2|Bacteria,1MZD5@1224|Proteobacteria,2U77X@28211|Alphaproteobacteria,3EZ7J@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Exopolysaccharide synthesis, ExoD	-	-	-	-	-	-	-	-	-	-	-	-	ExoD
DYD3_k127_1892831_18	1122613.ATUP01000001_gene2125	2.748e-83	286.0	COG1560@1|root,COG1560@2|Bacteria,1MVNI@1224|Proteobacteria,2TS2H@28211|Alphaproteobacteria,43WBC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG1560 Lauroyl myristoyl acyltransferase	msbB	-	2.3.1.241	ko:K02517	ko00540,ko01100,map00540,map01100	M00060	R05146	RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Lip_A_acyltrans
DYD3_k127_1892831_15	1122613.ATUP01000001_gene2126	1.03e-89	306.0	COG1663@1|root,COG1663@2|Bacteria,1MU8G@1224|Proteobacteria,2TTZ4@28211|Alphaproteobacteria,43WR8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA)	lpxK	-	2.7.1.130	ko:K00912	ko00540,ko01100,map00540,map01100	M00060	R04657	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	LpxK
DYD3_k127_1892831_6	1161401.ASJA01000034_gene3037	9.703e-130	426.0	COG1519@1|root,COG1519@2|Bacteria,1MU9F@1224|Proteobacteria,2TS37@28211|Alphaproteobacteria,43WI4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG1519 3-deoxy-D-manno-octulosonic-acid transferase	kdtA	-	2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15	ko:K02527	ko00540,ko01100,map00540,map01100	M00060,M00080	R04658,R05074,R09763	RC00009,RC00077,RC00247	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT30	-	Glycos_transf_N
DYD3_k127_1892831_21	1122613.ATUP01000001_gene2128	3.693e-76	265.0	COG2121@1|root,COG2121@2|Bacteria,1MZID@1224|Proteobacteria,2TSGQ@28211|Alphaproteobacteria,43XS3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	MA20_05800	-	-	ko:K09778	-	-	-	-	ko00000	-	-	-	DUF374
DYD3_k127_1892831_30	1454010.JEOE01000015_gene1126	1.279e-53	204.0	COG1216@1|root,COG1216@2|Bacteria,2IG08@201174|Actinobacteria	201174|Actinobacteria	M	Glycosyltransferase, group 2 family protein	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1892831_27	1229204.AMYY01000012_gene90	7.849e-62	221.0	COG2365@1|root,COG2365@2|Bacteria,1REIM@1224|Proteobacteria,2TVG9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Protein tyrosine serine phosphatase	-	-	-	-	-	-	-	-	-	-	-	-	DUF442,Y_phosphatase3
DYD3_k127_1892831_35	1280946.HY29_11395	8.844e-16	82.0	COG0776@1|root,COG0776@2|Bacteria,1MZ5B@1224|Proteobacteria,2UC5G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	hupA	-	-	ko:K03530	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_1892831_31	272942.RCAP_rcc01622	4.247e-53	192.0	COG2862@1|root,COG2862@2|Bacteria,1RANN@1224|Proteobacteria,2TSEF@28211|Alphaproteobacteria,1FCSI@1060|Rhodobacter	28211|Alphaproteobacteria	S	Uncharacterized protein family, UPF0114	yqhA	-	-	-	-	-	-	-	-	-	-	-	UPF0114
DYD3_k127_1892831_3	1161401.ASJA01000034_gene3040	1.153e-165	540.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,43WQH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG1132 ABC-type multidrug transport system, ATPase and permease components	msbA	-	-	ko:K02021,ko:K06147,ko:K11085	ko02010,map02010	-	-	-	ko00000,ko00001,ko01000,ko02000	3.A.1.106,3.A.1.109,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_1892831_33	1121949.AQXT01000002_gene604	2.241e-34	134.0	COG0483@1|root,COG0483@2|Bacteria,1MV4W@1224|Proteobacteria,2TV4R@28211|Alphaproteobacteria,43WWX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Inositol monophosphatase	suhB2	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
DYD3_k127_1892831_26	1161401.ASJA01000011_gene1576	3.686e-62	220.0	COG2761@1|root,COG2761@2|Bacteria,1NXUB@1224|Proteobacteria,2TRJ6@28211|Alphaproteobacteria,43XKE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	dithiol-disulfide isomerase involved in polyketide biosynthesis	dsb	-	-	-	-	-	-	-	-	-	-	-	DSBA
DYD3_k127_1892831_20	378806.STAUR_2388	1.478e-78	267.0	COG3576@1|root,COG3576@2|Bacteria,1R8RC@1224|Proteobacteria,430PA@68525|delta/epsilon subdivisions,2WZ68@28221|Deltaproteobacteria,2Z1EX@29|Myxococcales	28221|Deltaproteobacteria	S	Pfam:Pyridox_oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Putative_PNPOx
DYD3_k127_1892831_2	189753.AXAS01000030_gene7173	9.436e-216	691.0	COG1215@1|root,COG1215@2|Bacteria,1MWF8@1224|Proteobacteria,2TS1X@28211|Alphaproteobacteria,3JRSR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 21	-	-	2.4.1.12	ko:K00694	ko00500,ko01100,ko02026,map00500,map01100,map02026	-	R02889	RC00005	ko00000,ko00001,ko01000,ko01003,ko02000	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6	GT2	-	Glycos_transf_2,PilZ
DYD3_k127_1892831_24	224911.27354986	4.435e-67	244.0	COG0845@1|root,COG0845@2|Bacteria,1QUQA@1224|Proteobacteria,2UBD0@28211|Alphaproteobacteria,3JVG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	HlyD family secretion protein	-	-	-	-	-	-	-	-	-	-	-	-	HlyD_3,HlyD_D23
DYD3_k127_1892831_12	1122613.ATUP01000001_gene1068	3.513e-100	336.0	COG1360@1|root,COG1360@2|Bacteria,1MU4S@1224|Proteobacteria,2TQKZ@28211|Alphaproteobacteria,43ZD4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	OmpA family	MA20_18060	-	-	ko:K02557	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	OmpA
DYD3_k127_1892831_25	1089552.KI911559_gene1616	3.285e-63	233.0	COG1511@1|root,COG1511@2|Bacteria,1NYJB@1224|Proteobacteria,2TSX0@28211|Alphaproteobacteria,2JPFY@204441|Rhodospirillales	204441|Rhodospirillales	S	MotA TolQ ExbB proton channel family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1892831_1	627192.SLG_31810	1.106e-220	724.0	COG1629@1|root,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,2TTJG@28211|Alphaproteobacteria,2K3KA@204457|Sphingomonadales	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_1892831_19	1122604.JONR01000049_gene752	3.278e-83	289.0	COG3751@1|root,COG3751@2|Bacteria,1NG7K@1224|Proteobacteria,1S7QH@1236|Gammaproteobacteria,1X5S6@135614|Xanthomonadales	135614|Xanthomonadales	O	Prolyl 4-hydroxylase alpha subunit homologues.	-	-	1.14.11.2	ko:K00472	ko00330,ko01100,map00330,map01100	-	R01252	RC00478	ko00000,ko00001,ko01000	-	-	-	2OG-FeII_Oxy_3
DYD3_k127_1892831_9	1161401.ASJA01000013_gene753	1.013e-110	363.0	COG0483@1|root,COG0483@2|Bacteria,1MUQT@1224|Proteobacteria,2TR06@28211|Alphaproteobacteria,43WKT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Inositol monophosphatase	suhB	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
DYD3_k127_1892831_22	1211115.ALIQ01000011_gene3939	6.846e-75	276.0	COG0231@1|root,COG0231@2|Bacteria,1MW2J@1224|Proteobacteria,2TUWE@28211|Alphaproteobacteria,3NA9H@45404|Beijerinckiaceae	28211|Alphaproteobacteria	J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase	efp	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	ko:K02356	-	-	-	-	ko00000,ko03012	-	-	-	EFP,EFP_N,Elong-fact-P_C
DYD3_k127_1892831_8	366602.Caul_0762	2.041e-121	402.0	COG2269@1|root,COG2269@2|Bacteria,1MU97@1224|Proteobacteria,2TRD4@28211|Alphaproteobacteria,2KG86@204458|Caulobacterales	204458|Caulobacterales	J	class II (D K and N)	-	-	-	ko:K04568	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	tRNA-synt_2
DYD3_k127_1892831_36	247634.GPB2148_1205	1.416e-05	54.0	COG2015@1|root,COG2015@2|Bacteria,1R9IE@1224|Proteobacteria	1224|Proteobacteria	Q	Alkyl sulfatase and related hydrolases	-	-	-	-	-	-	-	-	-	-	-	-	Alkyl_sulf_dimr,Lactamase_B
DYD3_k127_1968987_5	1280952.HJA_07942	5.05e-115	383.0	COG0500@1|root,COG2226@2|Bacteria,1NDFZ@1224|Proteobacteria,2TVI5@28211|Alphaproteobacteria,43WAX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	COG0500 SAM-dependent methyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_1968987_3	1161401.ASJA01000005_gene2455	1.428e-138	468.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,43ZFA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Sensory box sensor histidine kinase response regulator	-	-	-	-	-	-	-	-	-	-	-	-	CHASE8,HATPase_c,HisKA,PAS_3,PAS_9,Response_reg
DYD3_k127_1968987_9	69395.JQLZ01000005_gene3603	1.563e-26	115.0	2E3CB@1|root,32YBM@2|Bacteria,1N6WD@1224|Proteobacteria,2UD9F@28211|Alphaproteobacteria,2KIV1@204458|Caulobacterales	204458|Caulobacterales	S	Domain of unknown function (DUF4154)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4154
DYD3_k127_1968987_2	1161401.ASJA01000005_gene2457	5.223e-168	556.0	COG1629@1|root,COG4771@2|Bacteria,1MUC1@1224|Proteobacteria,2U16R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TonB-dependent Receptor Plug Domain	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_1968987_4	1038858.AXBA01000021_gene4704	6.015e-137	444.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,2TSKV@28211|Alphaproteobacteria,3EXWW@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Aldo/keto reductase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD3_k127_1968987_10	1229204.AMYY01000009_gene1949	5.847e-22	97.0	COG1476@1|root,COG1476@2|Bacteria,1NPDH@1224|Proteobacteria	1224|Proteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
DYD3_k127_1968987_6	1280944.HY17_01060	2.383e-99	338.0	COG1518@1|root,COG1518@2|Bacteria,1PW41@1224|Proteobacteria,2V7AG@28211|Alphaproteobacteria,43ZG6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	CRISPR associated protein Cas1	-	-	-	-	-	-	-	-	-	-	-	-	Cas_Cas1
DYD3_k127_1968987_0	1280948.HY36_17570	7.247e-215	690.0	COG0417@1|root,COG0417@2|Bacteria	2|Bacteria	L	DNA replication proofreading	polB	-	2.7.7.7	ko:K02336,ko:K06877	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	CarbopepD_reg_2,DNA_pol_B,DNA_pol_B_exo1,RNase_H_2
DYD3_k127_1968987_7	1280944.HY17_01080	3.674e-77	273.0	COG0417@1|root,COG0417@2|Bacteria,1Q82Y@1224|Proteobacteria,2VE8P@28211|Alphaproteobacteria,43Z6R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA replication proofreading	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1968987_13	1282361.ABAC402_14085	3.706e-07	56.0	COG3209@1|root,COG3209@2|Bacteria,1NKW2@1224|Proteobacteria	1224|Proteobacteria	M	RHS Repeat	-	-	-	-	-	-	-	-	-	-	-	-	RHS_repeat
DYD3_k127_1968987_1	1449076.JOOE01000006_gene694	9.71e-196	649.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,2UBV3@28211|Alphaproteobacteria,2K32E@204457|Sphingomonadales	204457|Sphingomonadales	M	RHS Repeat	-	-	-	-	-	-	-	-	-	-	-	-	LysM,RHS_repeat
DYD3_k127_1981910_2	402881.Plav_1821	2.242e-140	468.0	COG3843@1|root,COG3843@2|Bacteria,1MU0S@1224|Proteobacteria,2TSP8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	Type IV secretory pathway VirD2	traI	-	-	-	-	-	-	-	-	-	-	-	DUF3363
DYD3_k127_1981910_6	1040989.AWZU01000027_gene3133	2.405e-17	88.0	COG4962@1|root,COG4962@2|Bacteria,1R8BY@1224|Proteobacteria,2U4B3@28211|Alphaproteobacteria,3JTXG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type ii secretion system protein e	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1981910_7	1123229.AUBC01000054_gene1365	4.805e-16	82.0	COG2963@1|root,COG2963@2|Bacteria,1RA59@1224|Proteobacteria,2U6HH@28211|Alphaproteobacteria,3JYE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Transposase	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD3_k127_1981910_4	1244869.H261_22863	5.377e-57	202.0	COG3436@1|root,COG3436@2|Bacteria,1RHDW@1224|Proteobacteria,2U7TH@28211|Alphaproteobacteria,2JT30@204441|Rhodospirillales	204441|Rhodospirillales	L	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K07484	-	-	-	-	ko00000	-	-	-	TnpB_IS66
DYD3_k127_1981910_1	1247963.JPHU01000004_gene625	4.56e-199	631.0	COG2433@1|root,COG2433@2|Bacteria,1RJ1Q@1224|Proteobacteria,2U9U2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS66,DDE_Tnp_IS66_C,LZ_Tnp_IS66,zf-IS66
DYD3_k127_1981910_5	1525715.IX54_09680	6.53e-42	165.0	COG0653@1|root,COG3318@1|root,COG0653@2|Bacteria,COG3318@2|Bacteria,1R4KR@1224|Proteobacteria,2U3DY@28211|Alphaproteobacteria,2PWHT@265|Paracoccus	28211|Alphaproteobacteria	U	Uncharacterised protein family (UPF0149)	-	-	-	ko:K07039	-	-	-	-	ko00000	-	-	-	SEC-C,UPF0149
DYD3_k127_1981910_8	1123236.KB899395_gene3136	0.0002301	52.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,1RSE7@1236|Gammaproteobacteria,46CIX@72275|Alteromonadaceae	1236|Gammaproteobacteria	M	TIGRFAM YD repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	RHS,RHS_repeat
DYD3_k127_1981910_3	1187851.A33M_3633	1.703e-81	286.0	COG0845@1|root,COG0845@2|Bacteria,1MXU4@1224|Proteobacteria,2TUXB@28211|Alphaproteobacteria,3FD1B@34008|Rhodovulum	28211|Alphaproteobacteria	M	HlyD family secretion protein	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_1981910_0	394221.Mmar10_0243	0.0	1435.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,43X6V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_1989703_7	234267.Acid_0655	3.642e-28	123.0	COG2813@1|root,COG2813@2|Bacteria	2|Bacteria	J	rRNA (guanine-N2-)-methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21,Methyltransf_32,NodS
DYD3_k127_1989703_1	935863.AWZR01000007_gene152	5.637e-147	474.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,1RNEQ@1236|Gammaproteobacteria,1XCG1@135614|Xanthomonadales	135614|Xanthomonadales	E	pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis	-	-	-	-	-	-	-	-	-	-	-	-	DegT_DnrJ_EryC1
DYD3_k127_1989703_5	319003.Bra1253DRAFT_07245	4.981e-74	265.0	COG1091@1|root,COG1091@2|Bacteria,1MUXM@1224|Proteobacteria,2TSP6@28211|Alphaproteobacteria,3JU6G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose	rfbD	GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008831,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016491,GO:0016614,GO:0016616,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509	1.1.1.133	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777	RC00182	ko00000,ko00001,ko00002,ko01000	-	-	-	RmlD_sub_bind
DYD3_k127_1989703_0	1121028.ARQE01000004_gene1193	4.615e-171	553.0	COG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2TT5T@28211|Alphaproteobacteria,2PK4U@255475|Aurantimonadaceae	28211|Alphaproteobacteria	M	Polysaccharide biosynthesis protein	rffG	-	4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD3_k127_1989703_6	1207063.P24_05777	2.582e-61	224.0	COG1898@1|root,COG1898@2|Bacteria,1R9YD@1224|Proteobacteria,2U7G8@28211|Alphaproteobacteria,2JSAE@204441|Rhodospirillales	204441|Rhodospirillales	G	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose	rfbC	-	5.1.3.13	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R06514	RC01531	ko00000,ko00001,ko00002,ko01000	-	-	-	dTDP_sugar_isom
DYD3_k127_1989703_2	190650.CC_1429	2.29e-139	448.0	COG2877@1|root,COG2877@2|Bacteria,1MV91@1224|Proteobacteria,2TRJX@28211|Alphaproteobacteria,2KFPM@204458|Caulobacterales	204458|Caulobacterales	M	3-deoxy-D-manno-octulosonic acid 8-phosphate synthase	kdsA	-	2.5.1.55	ko:K01627	ko00540,ko01100,map00540,map01100	M00063	R03254	RC00435	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	DAHP_synth_1
DYD3_k127_1989703_3	1161401.ASJA01000012_gene811	3.505e-119	392.0	COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,1MUXD@1224|Proteobacteria,2TU5X@28211|Alphaproteobacteria,43WWG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the SIS family. GutQ KpsF subfamily	kdsD	-	5.3.1.13	ko:K06041	ko00540,ko01100,map00540,map01100	M00063	R01530	RC00541	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CBS,SIS
DYD3_k127_1989703_4	570967.JMLV01000004_gene510	4.541e-82	292.0	COG1670@1|root,COG3980@1|root,COG1670@2|Bacteria,COG3980@2|Bacteria,1Q330@1224|Proteobacteria,2U781@28211|Alphaproteobacteria,2JTXS@204441|Rhodospirillales	204441|Rhodospirillales	M	COG3980 Spore coat polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1991785_2	228405.HNE_0617	2.54e-74	278.0	COG2227@1|root,COG2227@2|Bacteria,1MU89@1224|Proteobacteria,2TRIK@28211|Alphaproteobacteria,43WZN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway	ubiG	-	2.1.1.222,2.1.1.64	ko:K00568	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04988,R05614,R08769,R08781	RC00003,RC00392,RC01895	ko00000,ko00001,ko00002,ko01000	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_1991785_1	1382303.JPOM01000001_gene2434	8.379e-154	496.0	COG0527@1|root,COG0527@2|Bacteria,1MW3H@1224|Proteobacteria,2TRFA@28211|Alphaproteobacteria,2KFIQ@204458|Caulobacterales	204458|Caulobacterales	E	Belongs to the aspartokinase family	-	-	2.7.2.4	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase,ACT,ACT_7
DYD3_k127_1991785_0	1121948.AUAC01000004_gene145	8.031e-240	765.0	COG3605@1|root,COG3605@2|Bacteria,1QTTV@1224|Proteobacteria,2TR3Z@28211|Alphaproteobacteria,43W6Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Belongs to the PEP-utilizing enzyme family	ptsP	-	2.7.3.9	ko:K08484	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	GAF,GAF_2,PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C
DYD3_k127_1991785_3	394221.Mmar10_2257	3.444e-28	127.0	COG1426@1|root,COG1426@2|Bacteria,1PR8W@1224|Proteobacteria,2V9KH@28211|Alphaproteobacteria,43YKW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF4115,HTH_25
DYD3_k127_2004671_4	1207063.P24_02331	7.387e-209	662.0	COG0195@1|root,COG0195@2|Bacteria,1MWT7@1224|Proteobacteria,2TRQN@28211|Alphaproteobacteria,2JR3D@204441|Rhodospirillales	204441|Rhodospirillales	K	Participates in both transcription termination and antitermination	nusA	-	-	ko:K02600	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	HHH_5,KH_5,NusA_N,S1
DYD3_k127_2004671_33	1161401.ASJA01000003_gene2771	5.298e-55	200.0	COG0779@1|root,COG0779@2|Bacteria,1RDP2@1224|Proteobacteria,2TS4E@28211|Alphaproteobacteria,43XX4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Required for maturation of 30S ribosomal subunits	rimP	GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	ko:K09748	-	-	-	-	ko00000,ko03009	-	-	-	DUF150,DUF150_C
DYD3_k127_2004671_47	1499680.CCFE01000016_gene1005	1.619e-06	54.0	COG2002@1|root,COG2002@2|Bacteria,1UW6P@1239|Firmicutes,4HZHD@91061|Bacilli,1ZI0K@1386|Bacillus	91061|Bacilli	K	SpoVT / AbrB like domain	-	-	-	-	-	-	-	-	-	-	-	-	MazE_antitoxin
DYD3_k127_2004671_19	909663.KI867150_gene224	9.378e-103	344.0	COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,42RT8@68525|delta/epsilon subdivisions,2X6BE@28221|Deltaproteobacteria	28221|Deltaproteobacteria	V	ABC transporter	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_2004671_24	1267535.KB906767_gene3357	4.705e-83	283.0	COG0842@1|root,COG0842@2|Bacteria,3Y2S4@57723|Acidobacteria,2JISC@204432|Acidobacteriia	204432|Acidobacteriia	V	ABC-2 family transporter protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_2004671_28	1161401.ASJA01000003_gene2769	2.489e-73	257.0	COG0220@1|root,COG0220@2|Bacteria,1MUWJ@1224|Proteobacteria,2TUU9@28211|Alphaproteobacteria,43XHF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA	trmB	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234	2.1.1.33	ko:K03439	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Methyltransf_4
DYD3_k127_2004671_48	1205753.A989_04486	7.165e-06	57.0	COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,1RQ1J@1236|Gammaproteobacteria,1X3GJ@135614|Xanthomonadales	135614|Xanthomonadales	K	In Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system	sirA	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_2004671_6	1333998.M2A_0307	6.462e-187	591.0	COG0192@1|root,COG0192@2|Bacteria,1MUFQ@1224|Proteobacteria,2TR4P@28211|Alphaproteobacteria,4BP5C@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	metK	-	2.5.1.6	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	M00034,M00035,M00368,M00609	R00177,R04771	RC00021,RC01211	ko00000,ko00001,ko00002,ko01000	-	-	-	S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N
DYD3_k127_2004671_34	394221.Mmar10_3038	3.569e-50	185.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,43XU3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	QU41_21520	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_2004671_11	1161401.ASJA01000003_gene2766	7.39e-127	435.0	COG0815@1|root,COG0815@2|Bacteria,1MUBU@1224|Proteobacteria,2TQRC@28211|Alphaproteobacteria,43X2V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Transfers the fatty acyl group on membrane lipoproteins	lnt	-	-	ko:K03820	-	-	-	-	ko00000,ko01000	-	GT2	-	CN_hydrolase
DYD3_k127_2004671_20	1161401.ASJA01000003_gene2765	6.683e-93	314.0	COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2TVFA@28211|Alphaproteobacteria,43WUH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG1253 Hemolysins and related proteins containing CBS domains	tlyC	-	-	ko:K06189	-	-	-	-	ko00000,ko02000	9.A.40.1.2	-	-	CBS,CorC_HlyC
DYD3_k127_2004671_36	1411123.JQNH01000001_gene3463	5.218e-34	151.0	COG0319@1|root,COG0319@2|Bacteria,1MZ67@1224|Proteobacteria,2UBXV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA	ybeY	-	-	ko:K07042	-	-	-	-	ko00000,ko03009	-	-	-	UPF0054
DYD3_k127_2004671_12	1161401.ASJA01000003_gene2763	7.635e-116	383.0	COG1702@1|root,COG1702@2|Bacteria,1MVDV@1224|Proteobacteria,2TRV3@28211|Alphaproteobacteria,43X3M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG1702 Phosphate starvation-inducible protein PhoH	phoH	-	-	ko:K06217	-	-	-	-	ko00000	-	-	-	PhoH
DYD3_k127_2004671_5	1479238.JQMZ01000001_gene337	8.404e-198	628.0	COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,2TQN6@28211|Alphaproteobacteria,43WSW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	miaB	-	2.8.4.3	ko:K06168	-	-	R10645,R10646,R10647	RC00003,RC00980,RC03221,RC03222	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,TRAM,UPF0004
DYD3_k127_2004671_46	1121124.JNIX01000011_gene1831	5.012e-14	80.0	COG1309@1|root,COG1309@2|Bacteria,1PA7Z@1224|Proteobacteria,2UUB8@28211|Alphaproteobacteria,2KHD3@204458|Caulobacterales	204458|Caulobacterales	K	regulatory protein TetR	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2004671_49	1333998.M2A_2329	2.409e-05	54.0	COG5388@1|root,COG5388@2|Bacteria	2|Bacteria	S	PAS domain	-	-	-	-	-	-	-	-	-	-	-	-	PAS_5
DYD3_k127_2004671_31	1333998.M2A_0299	2.571e-60	214.0	COG0735@1|root,COG0735@2|Bacteria,1RDWJ@1224|Proteobacteria,2U6ZS@28211|Alphaproteobacteria,4BQAG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Belongs to the Fur family	fur	-	-	ko:K03711	-	-	-	-	ko00000,ko03000	-	-	-	FUR
DYD3_k127_2004671_22	1502851.FG93_00193	1.271e-91	308.0	COG0135@1|root,COG0135@2|Bacteria,1RA5Q@1224|Proteobacteria,2U5E8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	N-(5'phosphoribosyl)anthranilate (PRA) isomerase	-	-	5.3.1.24	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03509	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	PRAI
DYD3_k127_2004671_45	1217720.ALOX01000098_gene599	4.662e-25	117.0	COG0454@1|root,COG0456@2|Bacteria,1RIE6@1224|Proteobacteria,2UF5C@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Ribosomal-protein-alanine acetyltransferase	rimI	-	2.3.1.128	ko:K03789	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD3_k127_2004671_44	394221.Mmar10_3029	2.551e-30	129.0	COG1214@1|root,COG1214@2|Bacteria,1MXPH@1224|Proteobacteria,2TTM2@28211|Alphaproteobacteria,43YAX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG1214 Inactive homolog of metal-dependent proteases	yeaZ	-	2.3.1.234	ko:K01409,ko:K14742	-	-	R10648	RC00070,RC00416	ko00000,ko01000,ko03016	-	-	-	Peptidase_M22
DYD3_k127_2004671_29	1280949.HAD_00310	9.766e-71	244.0	COG0694@1|root,COG0694@2|Bacteria,1MVQ1@1224|Proteobacteria,2TUD1@28211|Alphaproteobacteria,43XF9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG0694 Thioredoxin-like proteins and domains	-	-	-	-	-	-	-	-	-	-	-	-	Nfu_N,NifU
DYD3_k127_2004671_37	314254.OA2633_10179	8.864e-34	135.0	COG0589@1|root,COG0589@2|Bacteria,1R9XB@1224|Proteobacteria,2U59E@28211|Alphaproteobacteria,44014@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Universal stress protein family	MA20_23830	-	-	-	-	-	-	-	-	-	-	-	Usp
DYD3_k127_2004671_26	1333998.M2A_0294	6.713e-77	270.0	COG5345@1|root,COG5345@2|Bacteria,1MWVH@1224|Proteobacteria,2U0ZR@28211|Alphaproteobacteria,4BRTU@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2333)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2333
DYD3_k127_2004671_38	1279038.KB907347_gene3155	9.851e-34	138.0	COG2847@1|root,COG2847@2|Bacteria,1MZ3M@1224|Proteobacteria,2UBUR@28211|Alphaproteobacteria,2JTRF@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	ko:K09796	-	-	-	-	ko00000,ko03110	-	-	-	PCuAC
DYD3_k127_2004671_8	450851.PHZ_c3460	3.38e-155	497.0	COG0180@1|root,COG0180@2|Bacteria,1MV4T@1224|Proteobacteria,2TQZX@28211|Alphaproteobacteria,2KG0W@204458|Caulobacterales	204458|Caulobacterales	J	Tryptophanyl-tRNA synthetase	trpS	-	6.1.1.2	ko:K01867	ko00970,map00970	M00359,M00360	R03664	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1b
DYD3_k127_2004671_7	228405.HNE_0519	1.377e-167	544.0	COG0728@1|root,COG0728@2|Bacteria,1MUH0@1224|Proteobacteria,2TS44@28211|Alphaproteobacteria,43WXH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane	murJ	-	-	ko:K03980	-	-	-	-	ko00000,ko01011,ko02000	2.A.66.4	-	-	MVIN
DYD3_k127_2004671_2	450851.PHZ_c3463	4.074e-242	779.0	COG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,2TSV0@28211|Alphaproteobacteria,2KF01@204458|Caulobacterales	204458|Caulobacterales	O	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen	glnD	-	2.7.7.59	ko:K00990	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	-	-	-	ACT,GlnD_UR_UTase,HD
DYD3_k127_2004671_1	1161401.ASJA01000002_gene2605	0.0	1020.0	COG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,2TQRR@28211|Alphaproteobacteria,43WW7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	mutS	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03555	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
DYD3_k127_2004671_16	1260251.SPISAL_01025	4.458e-106	366.0	COG0477@1|root,COG2814@2|Bacteria,1MUZ8@1224|Proteobacteria,1T1NH@1236|Gammaproteobacteria,1X2Q1@135613|Chromatiales	135613|Chromatiales	EGP	COG0477 Permeases of the major facilitator superfamily	-	-	-	ko:K08218	ko01501,map01501	M00628	-	-	ko00000,ko00001,ko00002,ko02000	2.A.1.25	-	-	MFS_1
DYD3_k127_2004671_15	394221.Mmar10_3018	3.93e-106	368.0	COG0642@1|root,COG0745@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2V7E0@28211|Alphaproteobacteria,43WW8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	sensor histidine kinase response regulator	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,Response_reg
DYD3_k127_2004671_3	1121948.AUAC01000009_gene484	2.197e-213	674.0	COG0606@1|root,COG0606@2|Bacteria,1MU4R@1224|Proteobacteria,2TQU6@28211|Alphaproteobacteria,43WU6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Mg chelatase subunit ChlI	-	-	-	ko:K07391	-	-	-	-	ko00000	-	-	-	ChlI,Mg_chelatase,Mg_chelatase_C
DYD3_k127_2004671_41	1123503.KB908056_gene2040	4.152e-31	131.0	COG2823@1|root,COG2823@2|Bacteria,1NJK0@1224|Proteobacteria,2U9XB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	periplasmic or secreted lipoprotein	osmY	-	-	-	-	-	-	-	-	-	-	-	BON
DYD3_k127_2004671_39	1207058.L53_02215	1.113e-31	129.0	COG0792@1|root,COG0792@2|Bacteria,1N6VN@1224|Proteobacteria,2UFTM@28211|Alphaproteobacteria,43YAQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Belongs to the UPF0102 family	MA20_24645	-	-	ko:K07460	-	-	-	-	ko00000	-	-	-	UPF0102
DYD3_k127_2004671_21	1207063.P24_02456	1.613e-92	316.0	COG0313@1|root,COG0313@2|Bacteria,1MU0E@1224|Proteobacteria,2TR14@28211|Alphaproteobacteria,2JQFJ@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA	rsmI	-	2.1.1.198	ko:K07056	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	TP_methylase
DYD3_k127_2004671_25	1479238.JQMZ01000001_gene400	2.067e-81	287.0	COG0683@1|root,COG0683@2|Bacteria,1QURG@1224|Proteobacteria,2TS62@28211|Alphaproteobacteria,4414W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	MA20_24635	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
DYD3_k127_2004671_10	627192.SLG_20320	2.416e-130	441.0	COG0190@1|root,COG0190@2|Bacteria,1MWU4@1224|Proteobacteria,2TWF4@28211|Alphaproteobacteria,2K9DB@204457|Sphingomonadales	204457|Sphingomonadales	H	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	-	-	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000	-	-	-	THF_DHG_CYH,THF_DHG_CYH_C
DYD3_k127_2004671_13	1449049.JONW01000005_gene1696	1.213e-109	368.0	COG0635@1|root,COG0635@2|Bacteria,1MU76@1224|Proteobacteria,2TT63@28211|Alphaproteobacteria,2KG4C@204458|Caulobacterales	204458|Caulobacterales	H	Involved in the biosynthesis of porphyrin-containing compound	-	-	-	-	-	-	-	-	-	-	-	-	HemN_C,Radical_SAM
DYD3_k127_2004671_27	1333998.M2A_0258	1.826e-76	261.0	COG0127@1|root,COG0127@2|Bacteria,1MUK5@1224|Proteobacteria,2TV4B@28211|Alphaproteobacteria,4BQ7G@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions	rdgB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576	3.6.1.66	ko:K02428	ko00230,map00230	-	R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000	-	-	-	Ham1p_like
DYD3_k127_2004671_42	1161401.ASJA01000002_gene2674	5.858e-31	131.0	2DHDX@1|root,2ZZCF@2|Bacteria,1Q8YB@1224|Proteobacteria,2V6XM@28211|Alphaproteobacteria,43YV8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2975)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2975
DYD3_k127_2004671_43	394221.Mmar10_3008	1.709e-30	128.0	COG3655@1|root,COG3655@2|Bacteria,1N6VH@1224|Proteobacteria,2UFAM@28211|Alphaproteobacteria,43Y68@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	ko:K07727	-	-	-	-	ko00000,ko03000	-	-	-	HTH_26
DYD3_k127_2004671_17	450851.PHZ_c3471	8.669e-105	347.0	COG0689@1|root,COG0689@2|Bacteria,1MVFZ@1224|Proteobacteria,2TRMC@28211|Alphaproteobacteria,2KFPN@204458|Caulobacterales	204458|Caulobacterales	J	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates	rph	-	2.7.7.56	ko:K00989	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	RNase_PH,RNase_PH_C
DYD3_k127_2004671_14	69395.JQLZ01000006_gene1994	3.613e-109	372.0	COG3659@1|root,COG3659@2|Bacteria,1QMC3@1224|Proteobacteria,2TU5Q@28211|Alphaproteobacteria,2KJCM@204458|Caulobacterales	204458|Caulobacterales	M	Carbohydrate-selective porin	-	-	-	ko:K07267	-	-	-	-	ko00000,ko02000	1.B.19.1	-	-	OprB
DYD3_k127_2004671_30	1380391.JIAS01000003_gene1826	1.364e-65	245.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,2JW66@204441|Rhodospirillales	204441|Rhodospirillales	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal
DYD3_k127_2004671_9	1382303.JPOM01000001_gene322	6.041e-135	456.0	COG1420@1|root,COG1420@2|Bacteria,1MVX4@1224|Proteobacteria,2TRUF@28211|Alphaproteobacteria,2KFFK@204458|Caulobacterales	204458|Caulobacterales	K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons	hrcA	-	-	ko:K03705	-	-	-	-	ko00000,ko03000	-	-	-	HrcA,HrcA_DNA-bdg
DYD3_k127_2004671_35	1207058.L53_12770	1.286e-47	188.0	COG0576@1|root,COG0576@2|Bacteria,1RH8T@1224|Proteobacteria,2U5V2@28211|Alphaproteobacteria,43XS0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ	grpE	-	-	ko:K03687	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	GrpE
DYD3_k127_2004671_40	1220583.GOACH_01_00290	2.839e-31	132.0	COG0599@1|root,COG0599@2|Bacteria,2IM8G@201174|Actinobacteria,4GGYR@85026|Gordoniaceae	201174|Actinobacteria	S	Carboxymuconolactone decarboxylase family	pcaC	-	4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03470	RC00938	ko00000,ko00001,ko01000	-	-	-	CMD
DYD3_k127_2004671_18	525897.Dbac_1642	4.609e-103	364.0	COG0642@1|root,COG2197@1|root,COG2202@1|root,COG2197@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,42M0Y@68525|delta/epsilon subdivisions,2WIR4@28221|Deltaproteobacteria,2M7T3@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	histidine kinase A domain protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF3365,HATPase_c,HisKA,PAS_3,PAS_4,Response_reg
DYD3_k127_2004671_23	1161401.ASJA01000002_gene2681	8.648e-87	291.0	COG3145@1|root,COG3145@2|Bacteria,1N5HB@1224|Proteobacteria,2U43K@28211|Alphaproteobacteria,4410P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	2OG-Fe(II) oxygenase superfamily	alkB	-	1.14.11.33	ko:K03919	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	2OG-FeII_Oxy_2
DYD3_k127_2004671_0	394221.Mmar10_3001	0.0	1020.0	COG0443@1|root,COG0443@2|Bacteria,1MVEN@1224|Proteobacteria,2TR5H@28211|Alphaproteobacteria,43WI0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Heat shock 70 kDa protein	dnaK	-	-	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	1.A.33.1	-	-	HSP70
DYD3_k127_2004671_32	1333998.M2A_0245	1.002e-55	198.0	COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,2TRZ1@28211|Alphaproteobacteria,4BP9A@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	dnaJ	-	-	ko:K03686	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	DnaJ,DnaJ_C,DnaJ_CXXCXGXG
DYD3_k127_2009644_2	1121123.AUAO01000002_gene441	1.442e-90	303.0	COG0332@1|root,COG0332@2|Bacteria,1NAGY@1224|Proteobacteria,2VF5B@28211|Alphaproteobacteria,2KHY3@204458|Caulobacterales	204458|Caulobacterales	I	Iron-containing redox enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Haem_oxygenas_2
DYD3_k127_2009644_1	190650.CC_0863	5.973e-103	349.0	2CIYT@1|root,2Z7R8@2|Bacteria,1Q6MN@1224|Proteobacteria,2UQUB@28211|Alphaproteobacteria,2KIEE@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2009644_6	1123020.AUIE01000045_gene5229	2.311e-50	198.0	COG0596@1|root,COG0596@2|Bacteria,1QIT9@1224|Proteobacteria,1RNP9@1236|Gammaproteobacteria,1YDBH@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_2009644_9	1160137.KB907307_gene18	2.785e-05	54.0	COG1309@1|root,COG1309@2|Bacteria,2IMJU@201174|Actinobacteria,4G0YI@85025|Nocardiaceae	201174|Actinobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2009644_5	394221.Mmar10_2156	1.191e-58	209.0	COG0745@1|root,COG0745@2|Bacteria,1QYPQ@1224|Proteobacteria,2TXUW@28211|Alphaproteobacteria,43Z4R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	cheYIII	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_2009644_0	1121949.AQXT01000002_gene2595	5.912e-103	346.0	COG2008@1|root,COG2008@2|Bacteria,1MWCR@1224|Proteobacteria,2TSUA@28211|Alphaproteobacteria,43WV8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Threonine aldolase	ltaE	-	4.1.2.48	ko:K01620	ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230	-	R00751,R06171	RC00312,RC00372	ko00000,ko00001,ko01000	-	-	-	Beta_elim_lyase
DYD3_k127_2009644_7	84531.JMTZ01000056_gene2553	7.885e-35	147.0	COG3832@1|root,COG3832@2|Bacteria,1RDMX@1224|Proteobacteria,1S914@1236|Gammaproteobacteria,1XC1N@135614|Xanthomonadales	135614|Xanthomonadales	KT	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	GyrI-like,Polyketide_cyc2
DYD3_k127_2009644_4	1472418.BBJC01000004_gene1788	4.217e-63	231.0	2CBAE@1|root,31814@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2009644_8	450851.PHZ_c1801	2.131e-20	105.0	COG4538@1|root,COG4538@2|Bacteria,1N60B@1224|Proteobacteria,2UEVR@28211|Alphaproteobacteria,2KHFQ@204458|Caulobacterales	204458|Caulobacterales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_2009644_3	314260.PB2503_04747	3.774e-74	267.0	COG3540@1|root,COG3540@2|Bacteria,1R5RU@1224|Proteobacteria,2U4KZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	COG3540 Phosphodiesterase alkaline phosphatase D	-	-	3.1.3.1	ko:K01113	ko00790,ko01100,ko02020,map00790,map01100,map02020	M00126	R04620	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PhoD
DYD3_k127_2019356_5	1121015.N789_13070	1.308e-74	265.0	COG1858@1|root,COG1858@2|Bacteria,1R7H4@1224|Proteobacteria	1224|Proteobacteria	P	Di-haem cytochrome c peroxidase	-	-	-	-	-	-	-	-	-	-	-	-	CCP_MauG
DYD3_k127_2019356_4	1121124.JNIX01000008_gene2545	4.392e-84	295.0	COG2334@1|root,COG2334@2|Bacteria,1MUKJ@1224|Proteobacteria,2TS6D@28211|Alphaproteobacteria,2KG5A@204458|Caulobacterales	204458|Caulobacterales	F	Belongs to the pseudomonas-type ThrB family	thrB	-	2.7.1.39	ko:K02204	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	M00018	R01771	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	APH
DYD3_k127_2019356_1	1035191.HMPREF0185_03012	3.604e-138	468.0	COG0498@1|root,COG0498@2|Bacteria,1MUWQ@1224|Proteobacteria,2TT0D@28211|Alphaproteobacteria,2KF1H@204458|Caulobacterales	204458|Caulobacterales	E	Threonine synthase	thrC	-	4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP,Thr_synth_N
DYD3_k127_2019356_0	1382303.JPOM01000001_gene93	2.251e-159	517.0	COG0014@1|root,COG0014@2|Bacteria,1MUGJ@1224|Proteobacteria,2TS83@28211|Alphaproteobacteria,2KEZN@204458|Caulobacterales	204458|Caulobacterales	E	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	proA	-	1.2.1.41	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	M00015	R03313	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_2019356_2	1161401.ASJA01000033_gene3048	1.665e-122	404.0	COG0263@1|root,COG0263@2|Bacteria,1MUBG@1224|Proteobacteria,2TRKB@28211|Alphaproteobacteria,43WEA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate	proB	GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.11	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	M00015	R00239	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase,PUA
DYD3_k127_2019356_7	1121948.AUAC01000002_gene963	2.146e-29	121.0	COG4496@1|root,COG4496@2|Bacteria,1N87R@1224|Proteobacteria,2UGB7@28211|Alphaproteobacteria,43YNS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Trp repressor protein	-	-	-	-	-	-	-	-	-	-	-	-	Trp_repressor
DYD3_k127_2019356_3	1229204.AMYY01000003_gene991	6.73e-108	356.0	COG0040@1|root,COG0040@2|Bacteria,1MUCY@1224|Proteobacteria,2TT0H@28211|Alphaproteobacteria,4BR33@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	ATP phosphoribosyltransferase	hisG	GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.4.2.17	ko:K00765	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01071	RC02819,RC03200	ko00000,ko00001,ko00002,ko01000	-	-	-	HisG,HisG_C
DYD3_k127_2019356_6	1123267.JONN01000001_gene1192	3.248e-50	186.0	COG0141@1|root,COG0141@2|Bacteria,1MUUF@1224|Proteobacteria,2TSBN@28211|Alphaproteobacteria,2K0A0@204457|Sphingomonadales	204457|Sphingomonadales	E	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine	hisD	-	1.1.1.23	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01158,R01163,R03012	RC00099,RC00242,RC00463	ko00000,ko00001,ko00002,ko01000	-	-	-	Histidinol_dh
DYD3_k127_2057896_5	1122613.ATUP01000001_gene1370	3.497e-31	130.0	COG1466@1|root,COG1466@2|Bacteria,1R8PA@1224|Proteobacteria,2U1KQ@28211|Alphaproteobacteria,43XYG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA polymerase III, delta subunit	holA	-	2.7.7.7	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta
DYD3_k127_2057896_3	1123503.KB908056_gene2075	2.079e-94	322.0	COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,2TSTN@28211|Alphaproteobacteria,2KFXZ@204458|Caulobacterales	204458|Caulobacterales	K	Belongs to the ParB family	parB	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
DYD3_k127_2057896_2	1122132.AQYH01000005_gene472	1.848e-98	328.0	COG1192@1|root,COG1192@2|Bacteria,1MV43@1224|Proteobacteria,2TSWH@28211|Alphaproteobacteria,4B93X@82115|Rhizobiaceae	28211|Alphaproteobacteria	D	ATPases involved in chromosome partitioning	parA	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
DYD3_k127_2057896_4	1122613.ATUP01000001_gene1373	2.037e-46	175.0	COG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,2U9T9@28211|Alphaproteobacteria,43Y05@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Specifically methylates the N7 position of guanine in position 527 of 16S rRNA	rsmG	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.170	ko:K03501	-	-	-	-	ko00000,ko01000,ko03009,ko03036	-	-	-	GidB
DYD3_k127_2057896_0	1122613.ATUP01000001_gene1374	6.679e-283	881.0	COG0445@1|root,COG0445@2|Bacteria,1MU6F@1224|Proteobacteria,2TRJS@28211|Alphaproteobacteria,43WB7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34	gidA	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363	-	ko:K03495	-	-	R08701	RC00053,RC00209,RC00870	ko00000,ko03016,ko03036	-	-	-	GIDA,GIDA_assoc
DYD3_k127_2057896_1	1161401.ASJA01000002_gene2717	2.152e-116	388.0	COG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,2TQZW@28211|Alphaproteobacteria,43WMV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34	mnmE	-	-	ko:K03650	-	-	R08701	RC00053,RC00209,RC00870	ko00000,ko01000,ko03016	-	-	-	MMR_HSR1,MnmE_helical,TrmE_N
DYD3_k127_2102814_0	1509405.GV67_09880	4.916e-227	711.0	COG2267@1|root,COG3629@1|root,COG2267@2|Bacteria,COG3629@2|Bacteria,1QU9N@1224|Proteobacteria,2TW44@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IT	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_2102814_9	1030157.AFMP01000016_gene2499	0.0001691	49.0	2BMG2@1|root,32G0S@2|Bacteria,1NIIU@1224|Proteobacteria,2UK8S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2102814_3	1007104.SUS17_2461	4.05e-90	314.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2TR47@28211|Alphaproteobacteria,2K0QG@204457|Sphingomonadales	204457|Sphingomonadales	G	glucose sorbosone	-	-	-	-	-	-	-	-	-	-	-	-	GSDH
DYD3_k127_2102814_2	1380394.JADL01000005_gene5585	2.393e-104	349.0	COG1878@1|root,COG1878@2|Bacteria,1MWWB@1224|Proteobacteria,2TSIG@28211|Alphaproteobacteria,2JTKQ@204441|Rhodospirillales	204441|Rhodospirillales	S	Putative cyclase	-	-	-	-	-	-	-	-	-	-	-	-	Cyclase
DYD3_k127_2102814_4	596151.DesfrDRAFT_2959	1.99e-85	295.0	COG0500@1|root,COG2226@2|Bacteria,1MW7J@1224|Proteobacteria,42Z6F@68525|delta/epsilon subdivisions,2WU3R@28221|Deltaproteobacteria,2ME7X@213115|Desulfovibrionales	28221|Deltaproteobacteria	Q	O-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_2
DYD3_k127_2102814_1	627192.SLG_06600	2.236e-178	601.0	COG1629@1|root,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,2TTJG@28211|Alphaproteobacteria,2K3KA@204457|Sphingomonadales	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_2102814_6	1415755.JQLV01000001_gene3152	2.67e-61	229.0	COG4229@1|root,COG4229@2|Bacteria,1R3V9@1224|Proteobacteria,1RP5Y@1236|Gammaproteobacteria,1XJT4@135619|Oceanospirillales	135619|Oceanospirillales	E	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)	mtnC	-	3.1.3.77	ko:K09880	ko00270,ko01100,map00270,map01100	M00034	R07395	RC02779	ko00000,ko00001,ko00002,ko01000	-	-	-	Hydrolase
DYD3_k127_2102814_5	1122132.AQYH01000001_gene934	1.717e-66	231.0	COG1791@1|root,COG1791@2|Bacteria,1RCZD@1224|Proteobacteria,2U761@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway	mtnD	-	1.13.11.53,1.13.11.54	ko:K08967	ko00270,ko01100,map00270,map01100	M00034	R07363,R07364	RC01866,RC02018,RC02118	ko00000,ko00001,ko00002,ko01000	-	-	-	ARD
DYD3_k127_2102814_7	1122132.AQYH01000001_gene935	4.654e-36	141.0	COG0235@1|root,COG0235@2|Bacteria,1MU54@1224|Proteobacteria,2U2EW@28211|Alphaproteobacteria,4BD10@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	araD	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0008270,GO:0008742,GO:0009056,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019752,GO:0019852,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046872,GO:0046914,GO:0051186,GO:0071704,GO:1901575	5.1.3.4	ko:K03077	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	M00550	R05850	RC01479	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldolase_II
DYD3_k127_2136317_6	1296990.H845_758	1.375e-07	53.0	COG3293@1|root,COG3293@2|Bacteria,1REEB@1224|Proteobacteria,2U74J@28211|Alphaproteobacteria,2JYDD@204441|Rhodospirillales	204441|Rhodospirillales	L	Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_2
DYD3_k127_2136317_4	1280948.HY36_16365	5.667e-19	91.0	COG2119@1|root,COG2119@2|Bacteria,1PP1X@1224|Proteobacteria,2V9AT@28211|Alphaproteobacteria,440DU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein family UPF0016	-	-	-	-	-	-	-	-	-	-	-	-	UPF0016
DYD3_k127_2136317_3	394221.Mmar10_2041	4.369e-52	190.0	COG3814@1|root,COG3814@2|Bacteria,1N1FE@1224|Proteobacteria,2U7H9@28211|Alphaproteobacteria,4410V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Stringent starvation protein B	MA20_02250	-	-	ko:K09985	-	-	-	-	ko00000	-	-	-	SspB
DYD3_k127_2136317_1	1122614.JHZF01000015_gene2505	9.303e-100	343.0	COG2124@1|root,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,2TSV7@28211|Alphaproteobacteria,2PD2P@252301|Oceanicola	28211|Alphaproteobacteria	C	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
DYD3_k127_2136317_2	1161401.ASJA01000005_gene2504	4.028e-73	263.0	COG1566@1|root,COG1566@2|Bacteria,1R50C@1224|Proteobacteria,2TUCN@28211|Alphaproteobacteria,440SZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	Protein of unknown function (DUF3667)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3667
DYD3_k127_2136317_7	1207058.L53_01185	0.0003133	43.0	29RCR@1|root,30CEW@2|Bacteria,1QTKW@1224|Proteobacteria,2V9S0@28211|Alphaproteobacteria,440DQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2136317_5	384765.SIAM614_25697	3.316e-12	74.0	COG0346@1|root,COG0346@2|Bacteria,1PK2J@1224|Proteobacteria,2UMZ6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_2136317_0	1280950.HJO_07687	7.597e-145	462.0	COG0207@1|root,COG0207@2|Bacteria,1MUBD@1224|Proteobacteria,2TQSB@28211|Alphaproteobacteria,43WB4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	thyA	-	2.1.1.45	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	M00053	R02101	RC00219,RC00332	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylat_synt
DYD3_k127_21694_12	1044.EH31_14260	3.13e-09	68.0	COG0836@1|root,COG0836@2|Bacteria,1MV39@1224|Proteobacteria,2TT0R@28211|Alphaproteobacteria,2K066@204457|Sphingomonadales	204457|Sphingomonadales	M	Mannose-1-phosphate guanylyltransferase	-	-	2.7.7.13	ko:K00971	ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110	M00114,M00361,M00362	R00885	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
DYD3_k127_21694_8	1207058.L53_13555	1.715e-82	290.0	COG2942@1|root,COG2942@2|Bacteria,1PE13@1224|Proteobacteria,2U4P6@28211|Alphaproteobacteria,43XN1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	COG2942 N-acyl-D-glucosamine 2-epimerase	-	-	-	-	-	-	-	-	-	-	-	-	GlcNAc_2-epim
DYD3_k127_21694_0	670307.HYPDE_29593	2.288e-178	568.0	COG0500@1|root,COG0500@2|Bacteria,1MVD1@1224|Proteobacteria,2TUKG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_13,Methyltransf_14,Methyltransf_23
DYD3_k127_21694_2	670307.HYPDE_29598	1.745e-134	432.0	COG1208@1|root,COG1208@2|Bacteria,1MUYJ@1224|Proteobacteria,2TS7U@28211|Alphaproteobacteria,3N85W@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	JM	Nucleotidyl transferase	rfbF	-	2.7.7.33	ko:K00978	ko00500,ko00520,ko01100,map00500,map00520,map01100	-	R00956	RC00002	ko00000,ko00001,ko01000	-	-	-	NTP_transferase
DYD3_k127_21694_6	1122132.AQYH01000003_gene3041	6.312e-89	299.0	COG2120@1|root,COG2120@2|Bacteria,1MX2V@1224|Proteobacteria,2TT5F@28211|Alphaproteobacteria,4BC39@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	GlcNAc-PI de-N-acetylase	-	-	-	-	-	-	-	-	-	-	-	-	PIG-L
DYD3_k127_21694_4	114615.BRADO4833	2.003e-108	361.0	2ART5@1|root,31H4G@2|Bacteria,1R86P@1224|Proteobacteria,2U0XF@28211|Alphaproteobacteria,3JV8H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_21694_3	717785.HYPMC_2816	7.026e-117	384.0	COG1682@1|root,COG1682@2|Bacteria,1N0X3@1224|Proteobacteria,2U57D@28211|Alphaproteobacteria,3N8IC@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	U	ABC-2 type transporter	-	-	-	ko:K09690	ko02010,map02010	M00250	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.103	-	-	ABC2_membrane
DYD3_k127_21694_1	1280947.HY30_16610	3.086e-146	475.0	COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,2TU3M@28211|Alphaproteobacteria,43XWF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	GM	COG1134 ABC-type polysaccharide polyol phosphate transport system, ATPase component	-	-	-	ko:K09691	ko02010,map02010	M00250	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.103	-	-	ABC_tran,Wzt_C
DYD3_k127_21694_9	1280941.HY2_10275	5.288e-63	228.0	COG1215@1|root,COG1215@2|Bacteria,1PVZ5@1224|Proteobacteria,2V76F@28211|Alphaproteobacteria,43Z7Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_21694_7	1280947.HY30_18105	1.124e-87	300.0	COG1442@1|root,COG1442@2|Bacteria,1N9H7@1224|Proteobacteria,2UH9M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Glycosyl transferase family 8	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_8
DYD3_k127_21694_5	717785.HYPMC_2813	1.255e-95	323.0	COG0463@1|root,COG0463@2|Bacteria,1N1N7@1224|Proteobacteria,2UAKU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Glycosyltransferase like family 2	-	-	-	ko:K16562	-	-	-	-	ko00000,ko01000,ko01003	-	GT2	-	Glycos_transf_2
DYD3_k127_21694_10	1121106.JQKB01000010_gene447	5.755e-35	146.0	COG1216@1|root,COG1216@2|Bacteria,1RHJA@1224|Proteobacteria,2UAU4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_21694_11	1110502.TMO_0578	7.374e-11	64.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,2JPVB@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	rkpK	-	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_2189831_1	1161401.ASJA01000026_gene2	2.15e-07	60.0	2FKQY@1|root,34CBE@2|Bacteria,1PAYA@1224|Proteobacteria,2UVZR@28211|Alphaproteobacteria,43YIH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2219)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2219
DYD3_k127_2189831_0	1280954.HPO_11469	1.888e-11	74.0	2FKQY@1|root,34CBE@2|Bacteria,1PAYA@1224|Proteobacteria,2UVZR@28211|Alphaproteobacteria,43YIH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2219)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2219
DYD3_k127_2200901_0	1267005.KB911255_gene2547	1.055e-262	822.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,3N6G0@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	P	ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,Hydrolase,YHS
DYD3_k127_2200901_5	394221.Mmar10_2397	2.863e-24	105.0	28S2V@1|root,2ZEEK@2|Bacteria,1P760@1224|Proteobacteria,2UYZ1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2200901_4	394221.Mmar10_2220	7.224e-28	119.0	COG1585@1|root,COG1585@2|Bacteria,1NG8Q@1224|Proteobacteria,2VCWI@28211|Alphaproteobacteria,43YJ3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	OU	COG1585 Membrane protein implicated in regulation of membrane protease activity	-	-	-	ko:K07340	-	-	-	-	ko00000	-	-	-	NfeD
DYD3_k127_2200901_1	1280954.HPO_11589	1.033e-102	342.0	COG0330@1|root,COG0330@2|Bacteria,1MUM8@1224|Proteobacteria,2TRUY@28211|Alphaproteobacteria,43WVR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG0330 Membrane protease subunits, stomatin prohibitin homologs	qmcA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	Band_7,Band_7_C
DYD3_k127_2200901_3	1121949.AQXT01000002_gene625	2.06e-60	216.0	COG0678@1|root,COG0678@2|Bacteria,1MU0H@1224|Proteobacteria,2U6ZN@28211|Alphaproteobacteria,43XJN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Peroxiredoxin	MA20_20905	-	1.11.1.15	ko:K03386	ko04214,map04214	-	-	-	ko00000,ko00001,ko01000,ko04147	-	-	-	Redoxin
DYD3_k127_2200901_2	1161401.ASJA01000012_gene884	1.037e-70	255.0	COG1678@1|root,COG1678@2|Bacteria,1RCXM@1224|Proteobacteria,2TTX4@28211|Alphaproteobacteria,43Y0V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Belongs to the UPF0301 (AlgH) family	MA20_18155	-	-	ko:K07735	-	-	-	-	ko00000,ko03000	-	-	-	DUF179
DYD3_k127_2233888_8	1207058.L53_00705	2.014e-81	280.0	COG0697@1|root,COG0697@2|Bacteria,1MVKG@1224|Proteobacteria,2U30N@28211|Alphaproteobacteria,43X7N@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EG	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	-	-	-	ko:K15268	-	-	-	-	ko00000,ko02000	2.A.7.3.2	-	-	EamA
DYD3_k127_2233888_11	394221.Mmar10_2092	8.106e-68	241.0	COG1076@1|root,COG1076@2|Bacteria,1N270@1224|Proteobacteria,2TTX1@28211|Alphaproteobacteria,43X7F@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	molecular chaperone	djlA	-	-	ko:K05801	-	-	-	-	ko00000,ko03110	-	-	-	DnaJ,TerB
DYD3_k127_2233888_0	1161401.ASJA01000001_gene380	0.0	1367.0	COG0145@1|root,COG0146@1|root,COG0145@2|Bacteria,COG0146@2|Bacteria,1MU2Y@1224|Proteobacteria,2TQZ6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EQ	N-methylhydantoinase A acetone carboxylase, beta subunit	oplA	-	3.5.2.9	ko:K01469	ko00480,map00480	-	R00251	RC00553	ko00000,ko00001,ko01000	-	-	-	Hydant_A_N,Hydantoinase_A,Hydantoinase_B
DYD3_k127_2233888_10	1380391.JIAS01000017_gene478	2.677e-68	267.0	COG2200@1|root,COG2200@2|Bacteria,1N299@1224|Proteobacteria,2TT4R@28211|Alphaproteobacteria,2JQJ5@204441|Rhodospirillales	204441|Rhodospirillales	T	COG2200 FOG EAL domain	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_4
DYD3_k127_2233888_6	1123247.AUIJ01000015_gene1377	6.028e-120	410.0	COG3608@1|root,COG3608@2|Bacteria,1MUAA@1224|Proteobacteria,2TRVI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	succinylglutamate desuccinylase	doeB	-	-	ko:K06987	-	-	-	-	ko00000	-	-	-	AstE_AspA
DYD3_k127_2233888_4	394221.Mmar10_2098	2.494e-141	464.0	COG0189@1|root,COG0189@2|Bacteria,1MX62@1224|Proteobacteria,2TRUH@28211|Alphaproteobacteria,43W5H@69657|Hyphomonadaceae	28211|Alphaproteobacteria	HJO	Belongs to the RimK family	rimK	-	6.3.2.32	ko:K05844,ko:K14940	ko00680,ko01120,map00680,map01120	-	R09401	RC00064,RC00090	ko00000,ko00001,ko01000,ko03009	-	-	-	RimK,Zn_protease
DYD3_k127_2233888_14	394221.Mmar10_2099	1.521e-48	189.0	COG4067@1|root,COG4067@2|Bacteria,1QXY3@1224|Proteobacteria,2TYFX@28211|Alphaproteobacteria,4415C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Putative ATP-dependant zinc protease	-	-	-	-	-	-	-	-	-	-	-	-	Zn_protease
DYD3_k127_2233888_18	1280950.HJO_12316	4.053e-38	152.0	COG4319@1|root,COG4319@2|Bacteria,1RDBF@1224|Proteobacteria,2U7AM@28211|Alphaproteobacteria,43Y3X@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4440)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4440
DYD3_k127_2233888_13	394221.Mmar10_0915	2.532e-55	204.0	COG1226@1|root,2Z7ZD@2|Bacteria,1MXKM@1224|Proteobacteria,2TSNZ@28211|Alphaproteobacteria,43WSJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Polycystin cation channel	ccaA	-	-	ko:K08714	-	-	-	-	ko00000,ko02000	1.A.1.14	-	-	Ion_trans
DYD3_k127_2233888_9	1161401.ASJA01000012_gene889	4.369e-71	251.0	COG0384@1|root,COG0384@2|Bacteria,1MUAS@1224|Proteobacteria,2U3ND@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Phenazine biosynthesis protein PhzF	phzF	-	5.3.3.17	ko:K06998	ko00405,ko01130,ko02024,map00405,map01130,map02024	M00835	-	-	ko00000,ko00001,ko00002,ko01000	-	-	-	PhzC-PhzF
DYD3_k127_2233888_7	1161401.ASJA01000001_gene371	7.741e-115	378.0	COG0500@1|root,COG0640@1|root,COG0640@2|Bacteria,COG2226@2|Bacteria,1NFSV@1224|Proteobacteria,2TSMV@28211|Alphaproteobacteria,43WIZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KQ	transcriptional	arsR	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5,Methyltransf_11,Methyltransf_31
DYD3_k127_2233888_12	1280941.HY2_15615	1.293e-56	211.0	COG2853@1|root,COG2853@2|Bacteria,1MVX0@1224|Proteobacteria,2U7CZ@28211|Alphaproteobacteria,43XE9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG2853 Surface lipoprotein	-	-	-	ko:K04754	-	-	-	-	ko00000	-	-	-	MlaA
DYD3_k127_2233888_15	1382303.JPOM01000001_gene533	1.707e-48	181.0	COG2854@1|root,COG2854@2|Bacteria,1NKFA@1224|Proteobacteria,2UAPV@28211|Alphaproteobacteria,2KIM2@204458|Caulobacterales	204458|Caulobacterales	Q	MlaC protein	-	-	-	ko:K07323	ko02010,map02010	M00210	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27.3	-	-	MlaC
DYD3_k127_2233888_1	1161401.ASJA01000001_gene367	1.752e-284	887.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TS7G@28211|Alphaproteobacteria,43X29@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence	chvD	-	-	ko:K15738	-	-	-	-	ko00000,ko02000	3.A.1.120.6	-	-	ABC_tran,ABC_tran_Xtn
DYD3_k127_2233888_5	935567.JAES01000011_gene1110	1.424e-122	420.0	COG1506@1|root,COG1506@2|Bacteria,1MUJ3@1224|Proteobacteria,1RPAW@1236|Gammaproteobacteria,1X6AG@135614|Xanthomonadales	135614|Xanthomonadales	E	X-Pro dipeptidyl-peptidase (S15 family)	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S9
DYD3_k127_2233888_2	1122604.JONR01000036_gene3808	4.862e-262	820.0	COG0129@1|root,COG0129@2|Bacteria,1MU3T@1224|Proteobacteria,1RMNA@1236|Gammaproteobacteria,1X32C@135614|Xanthomonadales	135614|Xanthomonadales	EG	Belongs to the IlvD Edd family	edd	-	4.2.1.12	ko:K01690	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	M00008	R02036	RC00543	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
DYD3_k127_2233888_16	1209072.ALBT01000034_gene1777	2.45e-42	168.0	COG0363@1|root,COG0363@2|Bacteria,1R5K6@1224|Proteobacteria,1S11C@1236|Gammaproteobacteria,1FG8S@10|Cellvibrio	1236|Gammaproteobacteria	G	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	pgl	-	3.1.1.31	ko:K01057	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R02035	RC00537	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucosamine_iso
DYD3_k127_2233888_3	1123503.KB908056_gene1814	1.737e-214	675.0	COG0364@1|root,COG0364@2|Bacteria,1MUN0@1224|Proteobacteria,2TQXA@28211|Alphaproteobacteria,2KF16@204458|Caulobacterales	204458|Caulobacterales	G	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	zwf	-	1.1.1.363,1.1.1.49	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	M00004,M00006,M00008	R00835,R02736,R10907	RC00001,RC00066	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	G6PD_C,G6PD_N
DYD3_k127_2233888_20	331869.BAL199_16568	1.914e-31	141.0	COG4235@1|root,COG4235@2|Bacteria,1MY4J@1224|Proteobacteria,2TSI7@28211|Alphaproteobacteria,4BRYE@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	Cytochrome c-type biogenesis protein	cycH	-	-	ko:K02200	-	-	-	-	ko00000	-	-	-	TPR_16,TPR_19,TPR_2,TPR_8
DYD3_k127_2233888_17	1231392.OCGS_2416	2.839e-41	158.0	COG3088@1|root,COG3088@2|Bacteria,1MZZ5@1224|Proteobacteria,2U96P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	subunit of a heme lyase	cycL	-	-	ko:K02200	-	-	-	-	ko00000	-	-	-	CcmH
DYD3_k127_2233888_19	394221.Mmar10_1658	4.349e-35	136.0	COG0526@1|root,COG0526@2|Bacteria,1RI3N@1224|Proteobacteria,2TSEW@28211|Alphaproteobacteria,43YKV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CO	Thiol disulfide interchange protein	ccmG	-	-	ko:K02199	-	-	-	-	ko00000,ko03110	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_2258612_3	1532558.JL39_11830	1.244e-189	599.0	COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,2U25Z@28211|Alphaproteobacteria,4B9EC@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism	accC	GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
DYD3_k127_2258612_7	450851.PHZ_c1852	2.917e-86	289.0	COG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,2U59K@28211|Alphaproteobacteria,2KG9S@204458|Caulobacterales	204458|Caulobacterales	O	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine	aat	-	2.3.2.6	ko:K00684	-	-	R03813,R11443,R11444	RC00055,RC00064	ko00000,ko01000	-	-	-	Leu_Phe_trans
DYD3_k127_2258612_10	1123503.KB908059_gene483	3.046e-35	146.0	COG4765@1|root,COG4765@2|Bacteria,1RHI7@1224|Proteobacteria,2UBR9@28211|Alphaproteobacteria,2KGXI@204458|Caulobacterales	204458|Caulobacterales	S	Uncharacterized protein conserved in bacteria (DUF2155)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2155
DYD3_k127_2258612_11	391613.RTM1035_15332	5.403e-34	136.0	COG1463@1|root,COG1463@2|Bacteria,1NCUG@1224|Proteobacteria,2UCHU@28211|Alphaproteobacteria,46QTM@74030|Roseovarius	28211|Alphaproteobacteria	Q	Involved in resistance to organic solvents, periplasmic component	mlaD	-	-	ko:K02067	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaD
DYD3_k127_2258612_8	1280952.HJA_11929	2.379e-56	200.0	COG3761@1|root,COG3761@2|Bacteria,1RHS3@1224|Proteobacteria,2U95G@28211|Alphaproteobacteria,43Y2P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NADH ubiquinone oxidoreductase 17.2 kD subunit	MA20_29090	-	1.6.99.3	ko:K00356	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	NDUFA12
DYD3_k127_2258612_4	1192868.CAIU01000019_gene2682	4.199e-148	494.0	COG0642@1|root,COG0784@1|root,COG2202@1|root,COG5002@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,2TYI3@28211|Alphaproteobacteria,43RTK@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_7,PAS_9,Response_reg
DYD3_k127_2258612_0	1161401.ASJA01000019_gene1126	0.0	1533.0	COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,2TS2I@28211|Alphaproteobacteria,43WJA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	COG0209 Ribonucleotide reductase, alpha subunit	nrdJ	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_2_N,Ribonuc_red_lgC
DYD3_k127_2258612_13	1280954.HPO_14356	1.057e-22	114.0	2E902@1|root,3339H@2|Bacteria,1N9U6@1224|Proteobacteria,2UFG4@28211|Alphaproteobacteria,43YX4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2258612_12	450851.PHZ_c1856	1.988e-28	132.0	COG1357@1|root,COG1357@2|Bacteria,1N7U9@1224|Proteobacteria,2U6GM@28211|Alphaproteobacteria,2KGD1@204458|Caulobacterales	204458|Caulobacterales	S	Pentapeptide repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	Pentapeptide
DYD3_k127_2258612_9	1121479.AUBS01000003_gene4120	3.217e-54	198.0	COG2947@1|root,COG2947@2|Bacteria,1RHRU@1224|Proteobacteria,2U71N@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Ubiquinol-cytochrome C reductase	MA20_25125	-	-	-	-	-	-	-	-	-	-	-	EVE
DYD3_k127_2258612_2	1280950.HJO_01740	2.49e-277	864.0	COG0173@1|root,COG0173@2|Bacteria,1MUXB@1224|Proteobacteria,2TR9U@28211|Alphaproteobacteria,43WK0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)	aspS	-	6.1.1.12	ko:K01876	ko00970,map00970	M00359,M00360	R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	GAD,tRNA-synt_2,tRNA_anti-codon
DYD3_k127_2258612_5	1161401.ASJA01000019_gene1130	4.443e-142	460.0	COG0349@1|root,COG0349@2|Bacteria,1MURV@1224|Proteobacteria,2TSQM@28211|Alphaproteobacteria,43WUF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides	rnd	-	3.1.13.5	ko:K03684	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DNA_pol_A_exo1,HRDC
DYD3_k127_2258612_6	1161401.ASJA01000019_gene1131	1.616e-106	375.0	COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2TR1W@28211|Alphaproteobacteria,43W9Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	FP	Ppx GppA	ppx	-	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230	-	R03409	RC00002	ko00000,ko00001,ko01000	-	-	-	Ppx-GppA
DYD3_k127_2258612_1	1123503.KB908060_gene161	8.145e-293	910.0	COG0855@1|root,COG0855@2|Bacteria,1MUM3@1224|Proteobacteria,2TRBP@28211|Alphaproteobacteria,2KFTC@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)	ppk	-	2.7.4.1	ko:K00937	ko00190,ko03018,map00190,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	PP_kinase,PP_kinase_C,PP_kinase_N
DYD3_k127_2299950_6	573065.Astex_1708	2.544e-74	259.0	COG3820@1|root,COG3820@2|Bacteria,1MVR2@1224|Proteobacteria,2TT8Z@28211|Alphaproteobacteria,2KG4Q@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF1013)	-	-	-	ko:K09987	-	-	-	-	ko00000	-	-	-	DUF1013
DYD3_k127_2299950_1	1123269.NX02_01375	6.867e-114	373.0	COG1662@1|root,COG1662@2|Bacteria,1MV8R@1224|Proteobacteria,2TURN@28211|Alphaproteobacteria,2K90K@204457|Sphingomonadales	204457|Sphingomonadales	L	PFAM IS1 transposase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2299950_4	1185652.USDA257_c20840	9.052e-86	304.0	2C5WB@1|root,2Z7IZ@2|Bacteria,1RCRD@1224|Proteobacteria,2UEX3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2299950_10	670307.HYPDE_39723	7.64e-16	81.0	2EUJ6@1|root,33N15@2|Bacteria,1NANE@1224|Proteobacteria,2UI67@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2299950_0	1380355.JNIJ01000012_gene1173	5.518e-180	577.0	COG1055@1|root,COG1055@2|Bacteria,1MUH8@1224|Proteobacteria,2U0BW@28211|Alphaproteobacteria,3JU7T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium proton antiporter, NhaD family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2299950_2	1161401.ASJA01000013_gene744	3.344e-113	383.0	COG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2TR1J@28211|Alphaproteobacteria,43WDY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N,ADH_zinc_N_2
DYD3_k127_2299950_11	1082931.KKY_2488	2.088e-07	55.0	COG5509@1|root,COG5509@2|Bacteria,1PN8V@1224|Proteobacteria,2V0VM@28211|Alphaproteobacteria,3N9C8@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1192)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1192
DYD3_k127_2299950_8	1282360.ABAC460_20140	5.685e-40	154.0	COG5317@1|root,COG5317@2|Bacteria,1RJIA@1224|Proteobacteria,2U9ID@28211|Alphaproteobacteria,2KGF5@204458|Caulobacterales	204458|Caulobacterales	S	Regulator of CtrA degradation	-	-	-	ko:K13592	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	DUF1465
DYD3_k127_2299950_9	1280953.HOC_07434	5.645e-24	106.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,4404S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
DYD3_k127_2299950_7	1280954.HPO_10637	1.184e-69	251.0	COG0742@1|root,COG0742@2|Bacteria,1MXKW@1224|Proteobacteria,2U70Y@28211|Alphaproteobacteria,43XF0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Methyltransferase	rsmD	-	2.1.1.171	ko:K08316	-	-	R07234	RC00003	ko00000,ko01000,ko03009	-	-	-	Cons_hypoth95
DYD3_k127_2299950_5	1333998.M2A_3001	5.521e-84	301.0	COG0475@1|root,COG0475@2|Bacteria,1QTSD@1224|Proteobacteria,2TW8J@28211|Alphaproteobacteria,4BTG0@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	Sodium/hydrogen exchanger family	-	-	-	ko:K03455	-	-	-	-	ko00000	2.A.37	-	-	Na_H_Exchanger,TrkA_N
DYD3_k127_2299950_12	1894.JOER01000051_gene5397	3.265e-07	64.0	COG2319@1|root,COG2319@2|Bacteria,2GJN3@201174|Actinobacteria	201174|Actinobacteria	F	WD-40 repeat	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,WD40
DYD3_k127_2299950_3	450851.PHZ_c3167	1.947e-93	315.0	COG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,2TQP2@28211|Alphaproteobacteria,2KFBW@204458|Caulobacterales	204458|Caulobacterales	J	Belongs to the pseudouridine synthase RsuA family	-	-	5.4.99.22	ko:K06178	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_2326988_3	1122613.ATUP01000001_gene1128	1.507e-129	422.0	COG0129@1|root,COG0129@2|Bacteria,1MUTQ@1224|Proteobacteria,2TRTQ@28211|Alphaproteobacteria,43W74@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the IlvD Edd family	ilvD	GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
DYD3_k127_2326988_2	1161401.ASJA01000022_gene138	2.805e-138	446.0	COG0059@1|root,COG0059@2|Bacteria,1MV7M@1224|Proteobacteria,2TRXI@28211|Alphaproteobacteria,43WX8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EH	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate	ilvC	-	1.1.1.86	ko:K00053	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R03051,R04439,R04440,R05068,R05069,R05071	RC00726,RC00836,RC00837,RC01726	ko00000,ko00001,ko00002,ko01000	-	-	-	IlvC,IlvN
DYD3_k127_2326988_0	314254.OA2633_08369	4.779e-240	753.0	COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2TR1I@28211|Alphaproteobacteria,43X05@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase	ilvI	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_2326988_1	1121948.AUAC01000004_gene217	2.83e-209	664.0	COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2TSCJ@28211|Alphaproteobacteria,43WRC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)	leuA	-	2.3.3.13	ko:K01649	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	M00432	R01213	RC00004,RC00470,RC02754	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like,LeuA_dimer
DYD3_k127_2337815_0	450851.PHZ_c3272	2.999e-233	733.0	COG0111@1|root,COG0111@2|Bacteria,1MU5Z@1224|Proteobacteria,2TR0F@28211|Alphaproteobacteria,2KG2A@204458|Caulobacterales	204458|Caulobacterales	EH	D-isomer specific 2-hydroxyacid dehydrogenase	-	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_2337815_1	1120983.KB894574_gene1009	1.097e-214	672.0	COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,2TRKY@28211|Alphaproteobacteria,1JMZ6@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP	purA	-	6.3.4.4	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	M00049	R01135	RC00458,RC00459	ko00000,ko00001,ko00002,ko01000	-	-	-	Adenylsucc_synt
DYD3_k127_2337815_6	35754.JNYJ01000026_gene8776	3.661e-09	68.0	2EG06@1|root,339S8@2|Bacteria,2ISW6@201174|Actinobacteria,4DJH2@85008|Micromonosporales	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2337815_4	1122612.AUBA01000005_gene2794	2.287e-38	148.0	COG3324@1|root,COG3324@2|Bacteria,1N3NT@1224|Proteobacteria	1224|Proteobacteria	S	Glyoxalase-like domain	-	-	-	ko:K06996	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_2337815_5	1304872.JAGC01000009_gene1431	3.177e-32	137.0	COG2207@1|root,COG3449@1|root,COG2207@2|Bacteria,COG3449@2|Bacteria,1MWTF@1224|Proteobacteria,42RC6@68525|delta/epsilon subdivisions,2WN72@28221|Deltaproteobacteria,2MA1Z@213115|Desulfovibrionales	28221|Deltaproteobacteria	K	transcription activator, effector binding	-	-	-	ko:K13652	-	-	-	-	ko00000,ko03000	-	-	-	GyrI-like,HTH_18
DYD3_k127_2337815_3	551789.ATVJ01000001_gene2582	4.089e-41	155.0	COG3682@1|root,COG3682@2|Bacteria,1MZU3@1224|Proteobacteria,2UIN1@28211|Alphaproteobacteria,43Y9J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Penicillinase_R
DYD3_k127_2337815_2	715226.ABI_35600	2.129e-43	181.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2UP5N@28211|Alphaproteobacteria,2KJ15@204458|Caulobacterales	204458|Caulobacterales	M	BlaR1 peptidase M56	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23,Peptidase_M56
DYD3_k127_2387284_3	1161401.ASJA01000018_gene1236	4.675e-58	218.0	COG0628@1|root,COG0628@2|Bacteria,1MXXU@1224|Proteobacteria,2TVPN@28211|Alphaproteobacteria,43WS1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	AI-2E family transporter	-	-	-	-	-	-	-	-	-	-	-	-	AI-2E_transport
DYD3_k127_2387284_8	582402.Hbal_0275	5.897e-20	99.0	2F7YH@1|root,340CC@2|Bacteria,1NX7Z@1224|Proteobacteria,2UTI0@28211|Alphaproteobacteria,43YWR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2387284_5	1121949.AQXT01000002_gene94	2.886e-38	166.0	COG2755@1|root,COG2755@2|Bacteria,1RBFJ@1224|Proteobacteria,2UG24@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	GDSL-like Lipase/Acylhydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
DYD3_k127_2387284_0	394221.Mmar10_2372	5.763e-155	523.0	COG5644@1|root,COG5644@2|Bacteria,1QYPM@1224|Proteobacteria,2TXUR@28211|Alphaproteobacteria,44150@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4175)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4175
DYD3_k127_2387284_4	1122613.ATUP01000001_gene480	2.564e-42	161.0	COG5467@1|root,COG5467@2|Bacteria,1MZRN@1224|Proteobacteria,2UC1G@28211|Alphaproteobacteria,43Y73@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1476)	MA20_09035	-	-	-	-	-	-	-	-	-	-	-	DUF1476
DYD3_k127_2387284_1	1161401.ASJA01000033_gene3046	5.107e-139	445.0	COG0152@1|root,COG0152@2|Bacteria,1MUR9@1224|Proteobacteria,2TR8D@28211|Alphaproteobacteria,43W8S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the SAICAR synthetase family	purC	-	6.3.2.6	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04591	RC00064,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	SAICAR_synt
DYD3_k127_2387284_7	1123059.KB823011_gene1172	9.075e-22	107.0	COG1828@1|root,COG1828@2|Bacteria,1N83G@1224|Proteobacteria,2UF7S@28211|Alphaproteobacteria,43YKY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purS	-	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	PurS
DYD3_k127_2387284_6	1123060.JONP01000086_gene5218	1.662e-31	128.0	COG1487@1|root,COG1487@2|Bacteria,1RBK3@1224|Proteobacteria,2U5AG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	vapC	-	-	ko:K07062	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PIN
DYD3_k127_2387284_9	1121861.KB899942_gene3830	4.01e-11	68.0	COG4691@1|root,COG4691@2|Bacteria,1N7UI@1224|Proteobacteria,2UKUV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	plasmid stabilization protein	-	-	-	ko:K21495	-	-	-	-	ko00000,ko02048	-	-	-	-
DYD3_k127_2387284_2	1161401.ASJA01000033_gene3050	4.472e-70	239.0	COG0047@1|root,COG0047@2|Bacteria,1MU4Y@1224|Proteobacteria,2TS67@28211|Alphaproteobacteria,43WZQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase_5
DYD3_k127_2419869_0	1479238.JQMZ01000001_gene1834	4.952e-231	721.0	COG0372@1|root,COG0372@2|Bacteria,1MUKX@1224|Proteobacteria,2TS63@28211|Alphaproteobacteria,43W4I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the citrate synthase family	gltA	-	2.3.3.1	ko:K01647	ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351	RC00004,RC00067	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Citrate_synt
DYD3_k127_2419869_1	588932.JHOF01000018_gene1104	1.404e-153	498.0	COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,2TRSU@28211|Alphaproteobacteria,2KFES@204458|Caulobacterales	204458|Caulobacterales	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_2419869_2	1161401.ASJA01000007_gene2094	5.635e-86	321.0	COG0658@1|root,COG0658@2|Bacteria,1MUKF@1224|Proteobacteria,2TRD5@28211|Alphaproteobacteria,43WSV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	membrane metal-binding protein	-	-	-	ko:K02238	-	M00429	-	-	ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2	-	-	Competence,DUF4131
DYD3_k127_2419869_3	391008.Smal_1886	1.116e-20	96.0	COG2801@1|root,COG2801@2|Bacteria,1MWNX@1224|Proteobacteria,1RQHG@1236|Gammaproteobacteria,1X4ZM@135614|Xanthomonadales	135614|Xanthomonadales	L	PFAM Integrase catalytic region	-	-	-	-	-	-	-	-	-	-	-	-	LZ_Tnp_IS481,rve
DYD3_k127_2424202_7	1280944.HY17_10020	1.81e-34	144.0	COG0775@1|root,COG0775@2|Bacteria,1MY5S@1224|Proteobacteria,2TU7K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	phosphorylase	mtnN	-	3.2.2.9	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	M00034,M00609	R00194,R01401	RC00063,RC00318	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
DYD3_k127_2424202_0	314260.PB2503_11594	0.0	1123.0	COG4773@1|root,COG4773@2|Bacteria,1NXPR@1224|Proteobacteria,2U161@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TonB-dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_2424202_2	1144305.PMI02_01354	1.915e-167	533.0	COG5042@1|root,COG5042@2|Bacteria,1NAN9@1224|Proteobacteria,2U36Q@28211|Alphaproteobacteria,2K243@204457|Sphingomonadales	204457|Sphingomonadales	F	Purine nucleoside permease	-	-	-	-	-	-	-	-	-	-	-	-	NUP
DYD3_k127_2424202_6	1280947.HY30_17275	3.436e-47	194.0	COG1225@1|root,COG1225@2|Bacteria,1RD2X@1224|Proteobacteria,2U7PM@28211|Alphaproteobacteria,43XM2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG0526 Thiol-disulfide isomerase and thioredoxins	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_2424202_1	1161401.ASJA01000021_gene629	1.763e-198	655.0	COG4232@1|root,COG4233@1|root,COG4232@2|Bacteria,COG4233@2|Bacteria,1MU8W@1224|Proteobacteria,2TTUM@28211|Alphaproteobacteria,43WGD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CO	to be involved in C-type cytochrome biogenesis	dsbD	-	1.8.1.8	ko:K04084	-	-	-	-	ko00000,ko01000,ko03110	5.A.1.1	-	-	DsbC,DsbD,Thioredoxin_7
DYD3_k127_2424202_5	450851.PHZ_c0328	5.889e-68	240.0	COG1262@1|root,COG1262@2|Bacteria,1Q227@1224|Proteobacteria,2U2IQ@28211|Alphaproteobacteria,2KFMI@204458|Caulobacterales	204458|Caulobacterales	S	SapC	-	-	-	-	-	-	-	-	-	-	-	-	SapC
DYD3_k127_2424202_8	1479238.JQMZ01000001_gene2254	1.002e-29	125.0	COG0735@1|root,COG0735@2|Bacteria,1MZIW@1224|Proteobacteria,2U9G4@28211|Alphaproteobacteria,43YD6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the Fur family	-	-	-	ko:K09823	ko02024,map02024	-	-	-	ko00000,ko00001,ko03000	-	-	-	FUR
DYD3_k127_2424202_9	314254.OA2633_05999	3.493e-08	64.0	COG0824@1|root,COG0824@2|Bacteria,1RA27@1224|Proteobacteria,2U6W6@28211|Alphaproteobacteria,43XSE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Thioesterase	-	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT_2
DYD3_k127_2424202_3	1116369.KB890024_gene2927	1.063e-145	468.0	COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,2TR2Q@28211|Alphaproteobacteria,43HHC@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	ABC transporter	hndI	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_2424202_4	1163409.UUA_15086	3.131e-115	392.0	COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,1RP0Z@1236|Gammaproteobacteria,1X3BP@135614|Xanthomonadales	135614|Xanthomonadales	V	Transport permease protein	yadH	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_2425603_4	1479238.JQMZ01000001_gene2415	4.446e-30	122.0	COG5385@1|root,COG5385@2|Bacteria,1MVEY@1224|Proteobacteria,2TSE6@28211|Alphaproteobacteria,43Y2A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0642 Signal transduction histidine kinase	MA20_46320	-	-	ko:K13588	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001	-	-	-	HPTransfase
DYD3_k127_2425603_8	1479238.JQMZ01000001_gene2416	5.036e-06	56.0	2EFX8@1|root,339PG@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2425603_9	1267600.JFGT01000006_gene1612	0.000417	49.0	COG3784@1|root,COG3784@2|Bacteria,1N6R1@1224|Proteobacteria,1SC8V@1236|Gammaproteobacteria,3W0YQ@53335|Pantoea	1236|Gammaproteobacteria	S	Amine metabolic protein ydbL	ydbL	-	-	ko:K09978	-	-	-	-	ko00000	-	-	-	DUF1318
DYD3_k127_2425603_7	551789.ATVJ01000001_gene2161	2.306e-16	82.0	2AKQN@1|root,31BHD@2|Bacteria,1Q7C6@1224|Proteobacteria,2UJNT@28211|Alphaproteobacteria,43YXM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	YnbE-like lipoprotein	-	-	-	-	-	-	-	-	-	-	-	-	Lipoprotein_19
DYD3_k127_2425603_3	1161401.ASJA01000004_gene2221	1.709e-52	213.0	COG2911@1|root,COG2911@2|Bacteria,1N08J@1224|Proteobacteria,2UE2C@28211|Alphaproteobacteria,440VH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Dicarboxylate transport	-	-	-	-	-	-	-	-	-	-	-	-	DctA-YdbH
DYD3_k127_2425603_2	1123503.KB908063_gene680	1.191e-110	375.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2TT3Z@28211|Alphaproteobacteria,2KFZ3@204458|Caulobacterales	204458|Caulobacterales	M	peptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_2425603_1	1122132.AQYH01000005_gene682	1.403e-135	443.0	COG0182@1|root,COG0182@2|Bacteria,1MUPM@1224|Proteobacteria,2TSPP@28211|Alphaproteobacteria,4B9PT@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)	mtnA	-	5.3.1.23	ko:K08963	ko00270,ko01100,map00270,map01100	M00034	R04420	RC01151	ko00000,ko00001,ko00002,ko01000	-	-	-	IF-2B
DYD3_k127_2425603_0	1379698.RBG1_1C00001G0725	1.258e-136	442.0	COG0053@1|root,COG0053@2|Bacteria,2NPHA@2323|unclassified Bacteria	2|Bacteria	P	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family	-	-	-	ko:K04088	-	M00742	-	-	ko00000,ko00002,ko01000	-	-	-	Cation_efflux,ZT_dimer
DYD3_k127_2425603_6	1121097.JCM15093_1602	2.271e-16	83.0	COG0642@1|root,COG0745@1|root,COG3292@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NDXU@976|Bacteroidetes,2FM2N@200643|Bacteroidia,4AMCC@815|Bacteroidaceae	976|Bacteroidetes	T	ATPase histidine kinase DNA gyrase B HSP90 domain protein	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y
DYD3_k127_2425603_5	666684.AfiDRAFT_0761	3.157e-19	87.0	COG0500@1|root,COG2226@2|Bacteria,1MXP4@1224|Proteobacteria,2TQU4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	ubiE/COQ5 methyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_2445037_1	1120705.FG95_01964	2.554e-152	486.0	COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,2TRU4@28211|Alphaproteobacteria,2K1AP@204457|Sphingomonadales	204457|Sphingomonadales	O	Peptidase family M13	-	-	-	ko:K07386	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M13,Peptidase_M13_N
DYD3_k127_2445037_7	247633.GP2143_10692	1.347e-87	306.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria	1224|Proteobacteria	V	COG1680 Beta-lactamase class C and other penicillin binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_2445037_10	936455.KI421499_gene4662	5.18e-20	94.0	COG0346@1|root,COG0346@2|Bacteria,1RJF4@1224|Proteobacteria,2U9AZ@28211|Alphaproteobacteria,3JZMM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_2445037_2	450851.PHZ_c0280	1.473e-147	474.0	COG2896@1|root,COG2896@2|Bacteria,1MW3W@1224|Proteobacteria,2TQQP@28211|Alphaproteobacteria,2KFTM@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate	moaA	-	4.1.99.22	ko:K03639	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R09394	RC03420	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Mob_synth_C,Radical_SAM
DYD3_k127_2445037_13	1286631.X805_16260	1.047e-06	59.0	COG1977@1|root,COG1977@2|Bacteria,1N0IE@1224|Proteobacteria,2VVSP@28216|Betaproteobacteria,1KMNH@119065|unclassified Burkholderiales	28216|Betaproteobacteria	H	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin	moaD	-	-	ko:K03636	ko04122,map04122	-	-	-	ko00000,ko00001	-	-	-	ThiS
DYD3_k127_2445037_5	1161401.ASJA01000016_gene1379	9.664e-116	393.0	COG1807@1|root,COG1807@2|Bacteria,1P6JE@1224|Proteobacteria,2TV39@28211|Alphaproteobacteria,43WPB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
DYD3_k127_2445037_9	551789.ATVJ01000001_gene1555	1.388e-49	184.0	COG1586@1|root,COG1586@2|Bacteria,1RH88@1224|Proteobacteria,2U5D3@28211|Alphaproteobacteria,440B2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	S-adenosylmethionine decarboxylase	speH	-	2.5.1.16,4.1.1.50	ko:K00797,ko:K01611	ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100	M00034,M00133	R00178,R01920,R02869,R08359	RC00021,RC00053,RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	AdoMet_dc,Spermine_synt_N,Spermine_synth
DYD3_k127_2445037_0	582402.Hbal_0132	0.0	1217.0	COG1629@1|root,COG4771@2|Bacteria,1N6JG@1224|Proteobacteria,2TSK9@28211|Alphaproteobacteria,43WCB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Outer membrane receptor	-	-	-	-	-	-	-	-	-	-	-	-	CarboxypepD_reg,Plug,TonB_dep_Rec
DYD3_k127_2445037_8	394221.Mmar10_0369	6.901e-87	301.0	COG2957@1|root,COG2957@2|Bacteria,1MX65@1224|Proteobacteria,2U0RR@28211|Alphaproteobacteria,43WSC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the agmatine deiminase family	aguA	-	3.5.3.12	ko:K10536	ko00330,ko01100,map00330,map01100	-	R01416	RC00177	ko00000,ko00001,ko01000	-	-	-	PAD_porph
DYD3_k127_2445037_4	1479238.JQMZ01000001_gene2443	2.097e-127	428.0	COG0388@1|root,COG0388@2|Bacteria,1MXG5@1224|Proteobacteria,2TVCS@28211|Alphaproteobacteria,43WFK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	N-carbamoylputrescine amidase	aguB	-	3.5.1.53	ko:K12251	ko00330,ko01100,map00330,map01100	-	R01152	RC00096	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
DYD3_k127_2445037_11	384765.SIAM614_27702	1.734e-16	87.0	COG3743@1|root,COG4553@1|root,COG3743@2|Bacteria,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,2TQXW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	de-polymerase	phaZ	-	3.1.1.75	ko:K05973	ko00650,map00650	-	R05118	-	ko00000,ko00001,ko01000	-	-	-	PHB_depo_C
DYD3_k127_2445037_3	394221.Mmar10_0377	1.086e-143	466.0	COG0019@1|root,COG0019@2|Bacteria,1MZ7Y@1224|Proteobacteria,2TSKB@28211|Alphaproteobacteria,43W95@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the Orn Lys Arg decarboxylase class-II family	ldc	-	4.1.1.17	ko:K01581	ko00330,ko00480,ko01100,ko01110,ko01130,map00330,map00480,map01100,map01110,map01130	M00134	R00670	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Orn_Arg_deC_N,Orn_DAP_Arg_deC
DYD3_k127_2445037_6	1280948.HY36_15585	5.313e-98	351.0	COG2182@1|root,COG2182@2|Bacteria,1MU3H@1224|Proteobacteria,2U0ZI@28211|Alphaproteobacteria,43WPN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Parallel beta-helix repeats	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2522036_1	314254.OA2633_05221	1.153e-88	305.0	COG0330@1|root,COG0330@2|Bacteria,1MUM2@1224|Proteobacteria,2TRTP@28211|Alphaproteobacteria,43WYX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	HflC and HflK could encode or regulate a protease	hflK	-	-	ko:K04088	-	M00742	-	-	ko00000,ko00002,ko01000	-	-	-	Band_7,HflK_N
DYD3_k127_2522036_3	394221.Mmar10_2023	1.251e-80	279.0	COG0330@1|root,COG0330@2|Bacteria,1MV7R@1224|Proteobacteria,2TRP4@28211|Alphaproteobacteria,43X13@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	HflC and HflK could regulate a protease	hflC	-	-	ko:K04087	-	M00742	-	-	ko00000,ko00002,ko01000	-	-	-	Band_7
DYD3_k127_2522036_0	1161401.ASJA01000001_gene440	3.835e-154	501.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TQPZ@28211|Alphaproteobacteria,43WIS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the peptidase S1C family	degP	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ,PDZ_2,Trypsin_2
DYD3_k127_2522036_7	633149.Bresu_0475	3.358e-17	89.0	COG5395@1|root,COG5395@2|Bacteria,1N0CF@1224|Proteobacteria,2UC5R@28211|Alphaproteobacteria,2KGXU@204458|Caulobacterales	204458|Caulobacterales	S	Predicted membrane protein (DUF2306)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2306
DYD3_k127_2522036_5	1449049.JONW01000006_gene2948	9.801e-38	152.0	COG3279@1|root,COG3279@2|Bacteria,1N903@1224|Proteobacteria,2UCXI@28211|Alphaproteobacteria,2KK3T@204458|Caulobacterales	204458|Caulobacterales	KT	LytTr DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	LytTR
DYD3_k127_2522036_4	1382303.JPOM01000001_gene1862	4.86e-72	258.0	COG0560@1|root,COG0560@2|Bacteria,1MWA3@1224|Proteobacteria,2TSEU@28211|Alphaproteobacteria,2KG1M@204458|Caulobacterales	204458|Caulobacterales	E	phosphoserine phosphatase	-	-	3.1.3.3	ko:K01079	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R00582	RC00017	ko00000,ko00001,ko00002,ko01000,ko01009	-	-	-	HAD
DYD3_k127_2522036_2	1161401.ASJA01000001_gene441	4.325e-86	300.0	COG0324@1|root,COG0324@2|Bacteria,1MUB2@1224|Proteobacteria,2TR8Z@28211|Alphaproteobacteria,43WXY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)	miaA	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.5.1.75	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	-	R01122	RC02820	ko00000,ko00001,ko01000,ko01006,ko03016	-	-	-	IPPT
DYD3_k127_2522036_6	1161401.ASJA01000018_gene1174	4.067e-18	93.0	COG4319@1|root,COG4319@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF4440,SnoaL_2,SnoaL_4
DYD3_k127_2524067_2	1161401.ASJA01000020_gene593	7.825e-23	105.0	COG5389@1|root,COG5389@2|Bacteria,1MZ23@1224|Proteobacteria,2U8CP@28211|Alphaproteobacteria,43YNE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF721)	-	-	-	-	-	-	-	-	-	-	-	-	DUF721
DYD3_k127_2524067_1	1161401.ASJA01000020_gene592	1.976e-53	198.0	COG1651@1|root,COG1651@2|Bacteria,1RFF4@1224|Proteobacteria,2U5BN@28211|Alphaproteobacteria,43Y3B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG1651 Protein-disulfide isomerase	MA20_42440	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_4
DYD3_k127_2524067_0	1449049.JONW01000005_gene1435	3.457e-110	370.0	COG1196@1|root,COG1196@2|Bacteria,1MUAQ@1224|Proteobacteria,2TRQG@28211|Alphaproteobacteria,2KFD5@204458|Caulobacterales	204458|Caulobacterales	D	Required for chromosome condensation and partitioning	smc	-	-	ko:K03529	-	-	-	-	ko00000,ko03036	-	-	-	SMC_N
DYD3_k127_2526048_6	1161401.ASJA01000004_gene2260	3.439e-15	80.0	COG3297@1|root,COG3297@2|Bacteria,1N0FQ@1224|Proteobacteria,2UEET@28211|Alphaproteobacteria,43YM8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	COG3297 Type II secretory pathway, component PulL	gspL	-	-	ko:K02461	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	GspL_C,T2SSL
DYD3_k127_2526048_7	1161401.ASJA01000004_gene2259	3.349e-13	79.0	COG3149@1|root,COG3149@2|Bacteria,1NGFT@1224|Proteobacteria,2UM4J@28211|Alphaproteobacteria,43YUK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Type II secretion system (T2SS), protein M	gspM	-	-	ko:K02462	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSM
DYD3_k127_2526048_4	1161401.ASJA01000004_gene2258	3.357e-23	113.0	2EGH8@1|root,33A9B@2|Bacteria,1NKAJ@1224|Proteobacteria,2UMM7@28211|Alphaproteobacteria,43YSP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Type II secretion system (T2SS), protein N	gspN	-	-	ko:K02463	ko05111,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSN
DYD3_k127_2526048_5	1161401.ASJA01000004_gene2257	2.506e-18	91.0	2EN3P@1|root,33FRS@2|Bacteria,1NHN1@1224|Proteobacteria,2UJY6@28211|Alphaproteobacteria,43YJY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2526048_3	1161401.ASJA01000016_gene1384	3.14e-60	222.0	COG3746@1|root,COG3746@2|Bacteria,1RA39@1224|Proteobacteria,2U9KD@28211|Alphaproteobacteria,43XY7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	phosphate-selective porin	-	-	-	ko:K07221	-	-	-	-	ko00000,ko02000	1.B.5.1	-	-	Porin_O_P
DYD3_k127_2526048_2	1161401.ASJA01000016_gene1385	1.552e-127	419.0	COG0226@1|root,COG0226@2|Bacteria,1MUH9@1224|Proteobacteria,2TR1C@28211|Alphaproteobacteria,43WZ5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG0226 ABC-type phosphate transport system, periplasmic component	pstS	-	-	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	PBP_like_2
DYD3_k127_2526048_1	1123503.KB908056_gene1661	1.649e-181	575.0	COG0438@1|root,COG0438@2|Bacteria,1MUB7@1224|Proteobacteria,2TQQ0@28211|Alphaproteobacteria,2KFKC@204458|Caulobacterales	204458|Caulobacterales	M	glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4
DYD3_k127_2526048_0	1123503.KB908056_gene1659	0.0	1025.0	COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,2TS19@28211|Alphaproteobacteria,2KFII@204458|Caulobacterales	204458|Caulobacterales	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	-	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_lgC,Ribonuc_red_lgN
DYD3_k127_25421_0	570967.JMLV01000002_gene1728	4.078e-107	347.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRKS@28211|Alphaproteobacteria,2JPS3@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	acsA	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
DYD3_k127_25421_1	588932.JHOF01000018_gene781	2.376e-32	140.0	COG4798@1|root,COG4798@2|Bacteria,1RHGZ@1224|Proteobacteria,2U69N@28211|Alphaproteobacteria,2KH4R@204458|Caulobacterales	204458|Caulobacterales	S	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_23,Methyltransf_25
DYD3_k127_2547122_9	1041147.AUFB01000051_gene4048	1.28e-21	99.0	COG3415@1|root,COG3415@2|Bacteria,1RJ69@1224|Proteobacteria,2UB2N@28211|Alphaproteobacteria,4BG9W@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	'Paired box' domain	-	-	-	ko:K07499	-	-	-	-	ko00000	-	-	-	HTH_23,HTH_32,HTH_Tnp_IS630,PAX
DYD3_k127_2547122_3	1117943.SFHH103_02919	2.219e-93	310.0	COG3335@1|root,COG3335@2|Bacteria,1P76X@1224|Proteobacteria,2U16U@28211|Alphaproteobacteria,4BC2J@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Transposase and inactivated	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3
DYD3_k127_2547122_4	1479238.JQMZ01000001_gene778	2.049e-80	271.0	COG0503@1|root,COG0503@2|Bacteria,1MVZ6@1224|Proteobacteria,2TV7J@28211|Alphaproteobacteria,43XDS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	apt	-	2.4.2.7	ko:K00759	ko00230,ko01100,map00230,map01100	-	R00190,R01229,R04378	RC00063	ko00000,ko00001,ko01000,ko04147	-	-	-	Pribosyltran
DYD3_k127_2547122_6	394221.Mmar10_0742	1.958e-65	233.0	COG0625@1|root,COG0625@2|Bacteria,1PHM1@1224|Proteobacteria,2TTQZ@28211|Alphaproteobacteria,43XK1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N,GST_N_2,GST_N_3
DYD3_k127_2547122_0	1123059.KB823012_gene2493	3.161e-129	421.0	COG0005@1|root,COG0005@2|Bacteria,1MUWW@1224|Proteobacteria,2TSN3@28211|Alphaproteobacteria,43WR3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates	mtnP	-	2.4.2.28	ko:K00772	ko00270,ko01100,map00270,map01100	M00034	R01402	RC00063,RC02819	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
DYD3_k127_2547122_7	1254432.SCE1572_02390	1.9e-58	205.0	COG3791@1|root,COG3791@2|Bacteria,1RFA9@1224|Proteobacteria,437DT@68525|delta/epsilon subdivisions,2X2JY@28221|Deltaproteobacteria,2Z1AU@29|Myxococcales	28221|Deltaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_2547122_8	1123261.AXDW01000015_gene3442	3.033e-54	196.0	COG3917@1|root,COG3917@2|Bacteria,1RDNQ@1224|Proteobacteria,1S4HX@1236|Gammaproteobacteria,1XAEN@135614|Xanthomonadales	135614|Xanthomonadales	Q	DSBA-like thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	DSBA
DYD3_k127_2547122_1	1382303.JPOM01000001_gene366	1.636e-119	388.0	COG1028@1|root,COG1028@2|Bacteria,1MU5Y@1224|Proteobacteria,2TRNQ@28211|Alphaproteobacteria,2KFS5@204458|Caulobacterales	204458|Caulobacterales	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	1.1.1.30	ko:K00019	ko00072,ko00650,ko01100,map00072,map00650,map01100	M00088	R01361	RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short,adh_short_C2
DYD3_k127_2547122_5	69279.BG36_06810	1.03e-76	271.0	COG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria,43JGX@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	esterase of the alpha-beta hydrolase superfamily	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin
DYD3_k127_2547122_2	450851.PHZ_c2776	1.038e-116	386.0	COG3509@1|root,COG3509@2|Bacteria,1QYYG@1224|Proteobacteria,2U47F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	depolymerase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2547122_10	551275.KB899547_gene433	1.997e-16	89.0	COG3279@1|root,COG3279@2|Bacteria,1N903@1224|Proteobacteria,2UBJG@28211|Alphaproteobacteria,43Y1U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KT	LytTr DNA-binding	-	-	-	-	-	-	-	-	-	-	-	-	LytTR
DYD3_k127_2554110_6	314254.OA2633_11375	1.61e-17	82.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,43WJH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	rkpK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_2554110_0	314260.PB2503_07222	6.949e-123	403.0	COG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,2TSIP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	NAD-dependent epimerase dehydratase	lspL	-	5.1.3.6	ko:K08679	ko00520,ko01100,map00520,map01100	-	R01385	RC00289	ko00000,ko00001,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_2554110_2	107636.JQNK01000009_gene3554	8.697e-79	278.0	COG0438@1|root,COG0438@2|Bacteria,1PDV1@1224|Proteobacteria,2U5AE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_2554110_1	402881.Plav_1913	1.25e-101	346.0	COG0438@1|root,COG0438@2|Bacteria,1Q6UR@1224|Proteobacteria,2VCXC@28211|Alphaproteobacteria,1JQIQ@119043|Rhodobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2554110_5	1131266.ARWQ01000001_gene1238	1.743e-47	188.0	arCOG08055@1|root,arCOG08055@2157|Archaea	2157|Archaea	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_2554110_3	1120956.JHZK01000001_gene3408	9.832e-70	254.0	COG0438@1|root,COG0438@2|Bacteria,1MUYN@1224|Proteobacteria,2U21B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_2554110_4	1550073.JROH01000029_gene1139	1.534e-66	236.0	COG0438@1|root,COG0438@2|Bacteria,1QFQQ@1224|Proteobacteria,2U3JJ@28211|Alphaproteobacteria,2K42Z@204457|Sphingomonadales	204457|Sphingomonadales	M	Glycosyltransferase Family 4	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_2554384_4	314254.OA2633_11375	9.392e-18	83.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,43WJH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	rkpK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_2554384_5	561230.PC1_0470	0.0003431	55.0	COG0689@1|root,COG2931@1|root,COG3210@1|root,COG3637@1|root,COG0689@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria,COG3637@2|Bacteria,1MU7T@1224|Proteobacteria,1RSVF@1236|Gammaproteobacteria,1MRYX@122277|Pectobacterium	1236|Gammaproteobacteria	JMQU	Domain of unknown function (DUF4347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4347,He_PIG
DYD3_k127_2554384_0	1182590.BN5_03939	1.22e-149	526.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,1RSAX@1236|Gammaproteobacteria,1YHVZ@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	U	adhes_NPXG filamentous hemagglutinin family N-terminal domain protein	-	-	-	-	-	-	-	-	-	-	-	-	ESPR,Glug,Haemagg_act
DYD3_k127_2554384_1	1192124.LIG30_2077	1.398e-136	470.0	COG2831@1|root,COG2831@2|Bacteria,1MWEC@1224|Proteobacteria,2VJXF@28216|Betaproteobacteria,1K3E2@119060|Burkholderiaceae	28216|Betaproteobacteria	U	Polypeptide-transport-associated domain protein ShlB-type	-	-	-	-	-	-	-	-	-	-	-	-	POTRA_2,ShlB
DYD3_k127_2554384_3	450851.PHZ_c0421	4.09e-36	142.0	COG0822@1|root,COG0822@2|Bacteria,1RDGB@1224|Proteobacteria,2U74A@28211|Alphaproteobacteria,2KGTU@204458|Caulobacterales	204458|Caulobacterales	C	PFAM nitrogen-fixing NifU domain protein	-	-	-	-	-	-	-	-	-	-	-	-	NifU_N
DYD3_k127_2554384_2	1207063.P24_07949	1.351e-51	190.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,2JPCQ@204441|Rhodospirillales	204441|Rhodospirillales	P	COG2217 Cation transport ATPase	-	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,HMA,Hydrolase,YHS
DYD3_k127_2566187_1	1123073.KB899242_gene952	2.023e-105	359.0	COG0666@1|root,COG0666@2|Bacteria,1P877@1224|Proteobacteria,1T8UK@1236|Gammaproteobacteria,1XB99@135614|Xanthomonadales	135614|Xanthomonadales	S	Ankyrin repeats (3 copies)	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2
DYD3_k127_2566187_3	1416759.AYMR01000009_gene3172	4.21e-05	55.0	COG4538@1|root,COG4538@2|Bacteria,2IQR8@201174|Actinobacteria,4FPTQ@85023|Microbacteriaceae	201174|Actinobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_2566187_2	195250.CM001776_gene1121	7.547e-60	229.0	COG0491@1|root,COG0491@2|Bacteria,1G400@1117|Cyanobacteria,1H175@1129|Synechococcus	1117|Cyanobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_2601505_3	1449049.JONW01000001_gene3416	2.55e-34	137.0	2CN5Z@1|root,32SGB@2|Bacteria,1N1FB@1224|Proteobacteria,2UBV1@28211|Alphaproteobacteria,2KH23@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF2948)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2948
DYD3_k127_2601505_0	394221.Mmar10_1126	9.518e-182	578.0	COG0766@1|root,COG0766@2|Bacteria,1MUH7@1224|Proteobacteria,2TRPH@28211|Alphaproteobacteria,43WAB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine	murA	-	2.5.1.7	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R00660	RC00350	ko00000,ko00001,ko01000,ko01011	-	-	-	EPSP_synthase
DYD3_k127_2601505_2	1449347.JQLN01000006_gene2725	2.109e-47	173.0	COG0640@1|root,COG0640@2|Bacteria,2GNW2@201174|Actinobacteria,2M3WE@2063|Kitasatospora	201174|Actinobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1,HTH_20
DYD3_k127_2601505_1	1380347.JNII01000005_gene3651	3.79e-51	186.0	COG3832@1|root,COG3832@2|Bacteria,2IMFE@201174|Actinobacteria,4EVNW@85013|Frankiales	201174|Actinobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_2640270_2	394221.Mmar10_0515	5.645e-24	112.0	COG0457@1|root,COG0457@2|Bacteria,1R3PT@1224|Proteobacteria,2TXA0@28211|Alphaproteobacteria,440T7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2640270_1	1123229.AUBC01000014_gene2891	1.388e-59	223.0	COG0845@1|root,COG0845@2|Bacteria,1NQZ0@1224|Proteobacteria,2U105@28211|Alphaproteobacteria,3JUK0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Biotin-lipoyl like	ragD	-	-	-	-	-	-	-	-	-	-	-	HlyD_D23
DYD3_k127_2640270_0	1211115.ALIQ01000185_gene3124	1.429e-82	280.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	ttgE	-	-	ko:K18989	-	M00720	-	-	ko00000,ko00002,ko02000	2.A.6.2.30	-	-	ACR_tran
DYD3_k127_2655403_5	1280947.HY30_04920	1.444e-74	259.0	COG0739@1|root,COG0739@2|Bacteria,1QGHU@1224|Proteobacteria,2TUF9@28211|Alphaproteobacteria,43XQD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_2655403_15	1207058.L53_08795	1.457e-11	76.0	2AAHH@1|root,30ZUJ@2|Bacteria,1PMTD@1224|Proteobacteria,2V0DK@28211|Alphaproteobacteria,4407Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2655403_16	228405.HNE_3410	2.368e-08	66.0	2AAHH@1|root,30ZUJ@2|Bacteria,1PMTD@1224|Proteobacteria,2V0DK@28211|Alphaproteobacteria,4407Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2655403_2	1280954.HPO_16345	1.196e-151	504.0	COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2UB6S@28211|Alphaproteobacteria,43YRD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Belongs to the peptidase S8 family	-	-	-	ko:K14645	ko02024,map02024	-	-	-	ko00000,ko00001,ko01000,ko01002,ko03110	-	-	-	Peptidase_S8
DYD3_k127_2655403_4	1123229.AUBC01000001_gene1788	8.143e-96	320.0	COG0225@1|root,COG0225@2|Bacteria,1MVUS@1224|Proteobacteria,2TSAM@28211|Alphaproteobacteria,3JV0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	msrA	-	1.8.4.11	ko:K07304	-	-	-	-	ko00000,ko01000	-	-	-	PMSR
DYD3_k127_2655403_6	1267533.KB906734_gene3858	3.574e-74	276.0	COG2890@1|root,COG2890@2|Bacteria	2|Bacteria	J	protein-(glutamine-N5) methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Dimerisation2,MetW,Methyltransf_2
DYD3_k127_2655403_11	743836.AYNA01000067_gene385	1.028e-54	216.0	COG0457@1|root,COG0457@2|Bacteria,1R4NF@1224|Proteobacteria,2TREU@28211|Alphaproteobacteria,370XW@31993|Methylocystaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,TPR_10,TPR_8,cNMP_binding
DYD3_k127_2655403_14	929712.KI912613_gene2322	1.183e-19	100.0	COG2954@1|root,COG5607@1|root,COG2954@2|Bacteria,COG5607@2|Bacteria,2HQYQ@201174|Actinobacteria,4CSRG@84995|Rubrobacteria	84995|Rubrobacteria	S	CHAD	-	-	-	-	-	-	-	-	-	-	-	-	CHAD
DYD3_k127_2655403_17	1354722.JQLS01000008_gene1758	4.786e-05	56.0	COG0457@1|root,COG0457@2|Bacteria,1R4NF@1224|Proteobacteria,2TREU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,TPR_10,TPR_8,cNMP_binding
DYD3_k127_2655403_7	1121033.AUCF01000003_gene3034	5.007e-67	249.0	COG2021@1|root,COG2021@2|Bacteria,1RDEH@1224|Proteobacteria,2U267@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_2655403_3	1121033.AUCF01000006_gene4098	5.259e-115	387.0	COG0460@1|root,COG0460@2|Bacteria,1MUDC@1224|Proteobacteria,2TQWS@28211|Alphaproteobacteria,2JPAR@204441|Rhodospirillales	204441|Rhodospirillales	E	homoserine dehydrogenase	hom	-	1.1.1.3	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	M00017,M00018	R01773,R01775	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,Homoserine_dh,NAD_binding_3
DYD3_k127_2655403_13	1280954.HPO_11604	3.626e-51	207.0	COG3182@1|root,COG3182@2|Bacteria,1R7F7@1224|Proteobacteria,2U28V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PepSY-associated TM helix	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
DYD3_k127_2655403_0	1370122.JHXQ01000008_gene1863	1e-322	994.0	COG0481@1|root,COG0481@2|Bacteria,1MVZA@1224|Proteobacteria,2TR3H@28211|Alphaproteobacteria,4B7CE@82115|Rhizobiaceae	28211|Alphaproteobacteria	M	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	lepA	-	-	ko:K03596	ko05134,map05134	-	-	-	ko00000,ko00001	-	-	-	EFG_C,EFG_II,GTP_EFTU,GTP_EFTU_D2,LepA_C
DYD3_k127_2655403_10	438753.AZC_2432	6.018e-56	205.0	COG3476@1|root,COG3476@2|Bacteria,1MZC1@1224|Proteobacteria,2UBYB@28211|Alphaproteobacteria,3EZMB@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	TspO/MBR family	tspO	-	-	ko:K05770	ko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166	-	-	-	ko00000,ko00001,ko02000	9.A.24	-	-	TspO_MBR
DYD3_k127_2655403_9	1333998.M2A_2961	4.984e-60	214.0	COG5400@1|root,COG5400@2|Bacteria,1RASG@1224|Proteobacteria,2U590@28211|Alphaproteobacteria,4BS59@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1134)	MA20_46305	-	-	-	-	-	-	-	-	-	-	-	DUF1134
DYD3_k127_2655403_8	394221.Mmar10_0140	3.375e-63	224.0	COG5400@1|root,COG5400@2|Bacteria,1RB2D@1224|Proteobacteria,2VGPA@28211|Alphaproteobacteria,440T0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1134)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1134
DYD3_k127_2655403_12	555793.WSK_3321	1.314e-51	194.0	COG2207@1|root,COG2207@2|Bacteria	2|Bacteria	K	Transcriptional regulator	-	-	-	ko:K07506	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
DYD3_k127_2655403_1	709797.CSIRO_4274	6.467e-160	526.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSRS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	methyl-accepting chemotaxis	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal,PAS_3
DYD3_k127_2658800_2	402881.Plav_0354	7.096e-17	86.0	COG0845@1|root,COG0845@2|Bacteria,1MVAS@1224|Proteobacteria,2TTGG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	cusB	-	-	ko:K07798	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4,8.A.1	-	-	CusF_Ec,HlyD_D23,HlyD_D4
DYD3_k127_2658800_0	402881.Plav_0354	4.264e-143	471.0	COG0845@1|root,COG0845@2|Bacteria,1MVAS@1224|Proteobacteria,2TTGG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	cusB	-	-	ko:K07798	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4,8.A.1	-	-	CusF_Ec,HlyD_D23,HlyD_D4
DYD3_k127_2658800_1	883078.HMPREF9695_02436	1.048e-55	210.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K07787	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4	-	-	ACR_tran
DYD3_k127_2698549_0	1280944.HY17_12130	7.12e-249	794.0	COG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,2TS6C@28211|Alphaproteobacteria,43WH3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	rpoD	-	-	ko:K03086	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
DYD3_k127_2698549_1	1161401.ASJA01000003_gene2855	1.357e-137	463.0	COG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,2TRU2@28211|Alphaproteobacteria,43X80@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	dnaG	-	-	ko:K02316	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2
DYD3_k127_2698549_2	582899.Hden_0883	8.711e-24	116.0	COG1075@1|root,COG1075@2|Bacteria,1P1TP@1224|Proteobacteria,2UVK2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2698549_3	215803.DB30_1747	1.619e-09	71.0	COG5276@1|root,COG5276@2|Bacteria	2|Bacteria	-	-	MA20_04930	-	-	-	-	-	-	-	-	-	-	-	LVIVD
DYD3_k127_2701055_4	1123503.KB908056_gene1578	2.357e-92	312.0	COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,2TQSY@28211|Alphaproteobacteria,2KFND@204458|Caulobacterales	204458|Caulobacterales	V	Transport permease protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_2701055_6	1123503.KB908056_gene1579	3.759e-62	220.0	COG5352@1|root,COG5352@2|Bacteria,1RHI6@1224|Proteobacteria,2TS7F@28211|Alphaproteobacteria,2KGJW@204458|Caulobacterales	204458|Caulobacterales	S	PFAM GcrA cell cycle regulator	-	-	-	ko:K13583	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	GcrA
DYD3_k127_2701055_7	1282362.AEAC466_09630	2.802e-34	134.0	COG1695@1|root,COG1695@2|Bacteria,1NDV3@1224|Proteobacteria,2UI98@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator PadR-like family	-	-	-	-	-	-	-	-	-	-	-	-	PadR
DYD3_k127_2701055_8	350058.Mvan_4611	1.398e-06	59.0	COG4308@1|root,COG4308@2|Bacteria,2IP4X@201174|Actinobacteria,239J8@1762|Mycobacteriaceae	201174|Actinobacteria	Q	Limonene-1,2-epoxide hydrolase	-	-	3.3.2.8	ko:K10533	ko00903,map00903	-	R05784,R09387	RC01473,RC02519	ko00000,ko00001,ko01000	-	-	-	LEH
DYD3_k127_2701055_3	190650.CC_0294	2.167e-115	375.0	COG0745@1|root,COG0745@2|Bacteria,1MY2Z@1224|Proteobacteria,2TRFZ@28211|Alphaproteobacteria,2KFH3@204458|Caulobacterales	204458|Caulobacterales	K	phosphate regulon transcriptional regulatory protein PhoB	phoB	-	-	ko:K07657	ko02020,map02020	M00434	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_2701055_5	1161401.ASJA01000006_gene1881	2.209e-76	276.0	COG0704@1|root,COG0704@2|Bacteria,1MUMI@1224|Proteobacteria,2TQMN@28211|Alphaproteobacteria,43XGE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Plays a role in the regulation of phosphate uptake	phoU	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186	-	ko:K02039	-	-	-	-	ko00000	-	-	-	PhoU
DYD3_k127_2701055_2	1123503.KB908056_gene1582	5.711e-128	432.0	COG1117@1|root,COG1117@2|Bacteria,1MU16@1224|Proteobacteria,2TQX9@28211|Alphaproteobacteria,2KF4W@204458|Caulobacterales	204458|Caulobacterales	P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system	pstB	-	3.6.3.27	ko:K02036	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.7	-	-	ABC_tran
DYD3_k127_2701055_0	1122613.ATUP01000001_gene1983	1.075e-170	554.0	COG0581@1|root,COG0581@2|Bacteria,1MUWB@1224|Proteobacteria,2TQYQ@28211|Alphaproteobacteria,43WMD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Phosphate transport system permease	pstA	-	-	ko:K02038	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	BPD_transp_1,DUF3333
DYD3_k127_2701055_1	1161401.ASJA01000006_gene1884	6.233e-151	490.0	COG0573@1|root,COG0573@2|Bacteria,1MVKP@1224|Proteobacteria,2TQU1@28211|Alphaproteobacteria,43WHS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	probably responsible for the translocation of the substrate across the membrane	pstC	-	-	ko:K02037	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	BPD_transp_1,DUF3708
DYD3_k127_2703324_2	1161401.ASJA01000007_gene2030	1.485e-86	310.0	COG0719@1|root,COG0719@2|Bacteria,1MVK0@1224|Proteobacteria,2TTK9@28211|Alphaproteobacteria,43XC9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component	sufD	-	-	ko:K09015	-	-	-	-	ko00000	-	-	-	UPF0051
DYD3_k127_2703324_1	59538.XP_005973384.1	2.143e-113	370.0	COG0396@1|root,2QS88@2759|Eukaryota	2759|Eukaryota	O	ATPase activity	ycf16	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	-	ko:K09013	-	-	-	-	ko00000,ko02000	-	-	-	ABC_tran
DYD3_k127_2703324_3	1038922.PflQ2_5400	4.483e-08	60.0	COG3668@1|root,COG3668@2|Bacteria,1PZJD@1224|Proteobacteria,1SE0E@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	plasmid stabilization	relE2	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_2703324_0	59538.XP_005973383.1	2.327e-207	647.0	COG0719@1|root,2QRGW@2759|Eukaryota,39YBY@33154|Opisthokonta,3BMZB@33208|Metazoa,3DFBD@33213|Bilateria	33208|Metazoa	O	Uncharacterized protein family (UPF0051)	-	-	-	-	-	-	-	-	-	-	-	-	UPF0051
DYD3_k127_2727925_1	450851.PHZ_c3268	0.0	1216.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,2KF9I@204458|Caulobacterales	204458|Caulobacterales	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	-	2.7.7.7	ko:K14162	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
DYD3_k127_2727925_3	384765.SIAM614_22872	3.483e-105	349.0	COG1305@1|root,COG1305@2|Bacteria,1MVMI@1224|Proteobacteria,2TRFC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	PFAM transglutaminase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_2727925_2	991905.SL003B_3825	3.97e-312	975.0	COG2307@1|root,COG2308@1|root,COG2307@2|Bacteria,COG2308@2|Bacteria,1MX5P@1224|Proteobacteria,2TRJE@28211|Alphaproteobacteria,4BPSG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	A predicted alpha-helical domain with a conserved ER motif.	MA20_16190	-	-	-	-	-	-	-	-	-	-	-	Alpha-E,CP_ATPgrasp_2
DYD3_k127_2727925_0	991905.SL003B_3826	0.0	1749.0	COG1305@1|root,COG4196@1|root,COG1305@2|Bacteria,COG4196@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,4BPQH@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Putative amidoligase enzyme (DUF2126)	MA20_16195	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,DUF2126,Transglut_core
DYD3_k127_2727925_4	1188256.BASI01000009_gene157	1.132e-05	51.0	2BZCV@1|root,31ZV2@2|Bacteria,1RJKX@1224|Proteobacteria,2UAUI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2742518_8	1280949.HAD_01815	5.599e-47	181.0	COG0702@1|root,COG0702@2|Bacteria,1PHHT@1224|Proteobacteria,2V5SH@28211|Alphaproteobacteria,440HT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	GM	epimerase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2742518_9	394221.Mmar10_1021	2.872e-46	169.0	COG0278@1|root,COG0278@2|Bacteria,1MZ4V@1224|Proteobacteria,2U9QB@28211|Alphaproteobacteria,43XXV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the glutaredoxin family. Monothiol subfamily	grxC2	-	-	ko:K07390	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Glutaredoxin
DYD3_k127_2742518_12	1125971.ASJB01000017_gene6092	1.026e-39	156.0	COG2343@1|root,COG2343@2|Bacteria,2IKUM@201174|Actinobacteria,4E7CE@85010|Pseudonocardiales	201174|Actinobacteria	S	Domain of unknown function (DUF427)	-	-	-	-	-	-	-	-	-	-	-	-	NTP_transf_9
DYD3_k127_2742518_13	595536.ADVE02000001_gene3306	4.977e-30	126.0	COG4636@1|root,COG4636@2|Bacteria,1RJC2@1224|Proteobacteria,2UA5B@28211|Alphaproteobacteria,36ZVK@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Putative restriction endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	Uma2
DYD3_k127_2742518_1	582899.Hden_0308	1.411e-200	635.0	COG0621@1|root,COG0621@2|Bacteria,1MU7N@1224|Proteobacteria,2TQUS@28211|Alphaproteobacteria,3N6AT@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	H	Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12	rimO	-	2.8.4.4	ko:K14441	-	-	R10652	RC00003,RC03217	ko00000,ko01000,ko03009	-	-	-	Radical_SAM,TRAM,UPF0004
DYD3_k127_2742518_16	190650.CC_2512	2.366e-05	51.0	2EMPE@1|root,33FBV@2|Bacteria,1NGMP@1224|Proteobacteria,2UMQY@28211|Alphaproteobacteria,2KJDG@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2742518_15	551275.KB899547_gene557	8.427e-12	71.0	2EMPE@1|root,33FBV@2|Bacteria,1NGMP@1224|Proteobacteria,2UMQY@28211|Alphaproteobacteria,43YP7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2742518_6	551789.ATVJ01000001_gene2393	6.892e-99	357.0	COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,2TSU8@28211|Alphaproteobacteria,43XA0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Polyphosphate kinase 2 (PPK2)	-	-	-	-	-	-	-	-	-	-	-	-	PPK2
DYD3_k127_2742518_4	450851.PHZ_c0994	3.666e-103	338.0	COG0522@1|root,COG0522@2|Bacteria,1MW0U@1224|Proteobacteria,2TRQH@28211|Alphaproteobacteria,2KFJD@204458|Caulobacterales	204458|Caulobacterales	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	rpsD	-	-	ko:K02986	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S4,S4
DYD3_k127_2742518_3	450851.PHZ_c1163	4.482e-110	385.0	COG0642@1|root,COG0784@1|root,COG2202@1|root,COG2203@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TWFB@28211|Alphaproteobacteria,2KFH9@204458|Caulobacterales	204458|Caulobacterales	T	histidine kinase A domain protein	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_3,Response_reg
DYD3_k127_2742518_7	1161401.ASJA01000004_gene2314	2.217e-64	230.0	COG0565@1|root,COG0565@2|Bacteria,1N47Y@1224|Proteobacteria,2TS8J@28211|Alphaproteobacteria,43WX1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	tRNA rRNA methyltransferase SpoU	trmJ	-	-	ko:K02533	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DUF559,SpoU_methylase
DYD3_k127_2742518_0	1280954.HPO_15773	6.219e-214	686.0	COG0538@1|root,COG0538@2|Bacteria,1MUIB@1224|Proteobacteria,2TQWD@28211|Alphaproteobacteria,43WJ1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the isocitrate and isopropylmalate dehydrogenases family	icd	-	1.1.1.42	ko:K00031	ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146	M00009,M00010,M00173,M00740	R00267,R00268,R01899	RC00001,RC00084,RC00114,RC00626,RC02801	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
DYD3_k127_2742518_14	1081640.AGFU01000005_gene1000	6.785e-16	83.0	2A71R@1|root,30VX3@2|Bacteria,1RC87@1224|Proteobacteria,2U66C@28211|Alphaproteobacteria,2K6SD@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2742518_10	1117318.PRUB_11046	1.56e-44	183.0	COG2199@1|root,COG4251@1|root,COG3706@2|Bacteria,COG4251@2|Bacteria,1R7HC@1224|Proteobacteria	1224|Proteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GAF,GGDEF,HATPase_c,HWE_HK,HisKA,MASE1,PAS,PAS_3,PAS_4,PAS_9,Reg_prop,Response_reg,Y_Y_Y,dCache_1
DYD3_k127_2742518_11	1117318.PRUB_11051	3.777e-42	167.0	COG0745@1|root,COG0745@2|Bacteria,1RD6H@1224|Proteobacteria,1T2RG@1236|Gammaproteobacteria	1236|Gammaproteobacteria	T	Response regulator receiver	-	-	-	ko:K02485	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg
DYD3_k127_2742518_2	1122135.KB893167_gene2315	1.267e-132	445.0	COG4251@1|root,COG4251@2|Bacteria,1NSQ1@1224|Proteobacteria	1224|Proteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	DUF3365,HATPase_c,HisKA,PAS,PAS_3
DYD3_k127_2742518_5	1123368.AUIS01000001_gene1893	1.02e-99	335.0	COG0514@1|root,COG0514@2|Bacteria,1MVGG@1224|Proteobacteria,1RMPG@1236|Gammaproteobacteria,2NCDF@225057|Acidithiobacillales	225057|Acidithiobacillales	L	RQC	-	-	3.6.4.12	ko:K03654	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind
DYD3_k127_2747129_12	1161401.ASJA01000020_gene581	4.444e-64	233.0	COG1835@1|root,COG1835@2|Bacteria,1RDAA@1224|Proteobacteria,2U8A0@28211|Alphaproteobacteria,43XDY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	exopolysaccharide production protein ExoZ	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
DYD3_k127_2747129_6	1479238.JQMZ01000001_gene328	7.165e-111	370.0	COG0524@1|root,COG0524@2|Bacteria,1MUUC@1224|Proteobacteria,2TS9D@28211|Alphaproteobacteria,43WJU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	COG0524 Sugar kinases, ribokinase family	pfkB	-	2.7.1.20,2.7.1.4	ko:K00847,ko:K00856	ko00051,ko00230,ko00500,ko00520,ko01100,map00051,map00230,map00500,map00520,map01100	-	R00185,R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
DYD3_k127_2747129_13	1161401.ASJA01000006_gene1905	9.437e-62	216.0	COG3837@1|root,COG3837@2|Bacteria,1R9WZ@1224|Proteobacteria,2U6K6@28211|Alphaproteobacteria,43Y7K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_2747129_3	1123503.KB908057_gene2314	2.343e-136	460.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,2KG5J@204458|Caulobacterales	204458|Caulobacterales	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_4,PAS_7,PAS_8
DYD3_k127_2747129_10	402881.Plav_1239	3.198e-79	269.0	COG5405@1|root,COG5405@2|Bacteria,1MVF2@1224|Proteobacteria,2TRRE@28211|Alphaproteobacteria,1JNT0@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery	hslV	-	3.4.25.2	ko:K01419	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Proteasome
DYD3_k127_2747129_16	1247963.JPHU01000005_gene360	1.508e-57	203.0	COG3565@1|root,COG3565@2|Bacteria,1RD7C@1224|Proteobacteria,2U78G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	dioxygenase of extradiol dioxygenase family	-	-	-	ko:K06991	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_2747129_17	754035.Mesau_04494	5.776e-55	215.0	COG1835@1|root,COG1835@2|Bacteria,1N2Z2@1224|Proteobacteria,2U7WI@28211|Alphaproteobacteria,43JZD@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
DYD3_k127_2747129_1	1245469.S58_02200	8.166e-201	634.0	COG1220@1|root,COG1220@2|Bacteria,1MVK9@1224|Proteobacteria,2TRXC@28211|Alphaproteobacteria,3JT4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis	hslU	-	-	ko:K03667	-	-	-	-	ko00000,ko03110	-	-	-	AAA_2,ClpB_D2-small
DYD3_k127_2747129_4	394221.Mmar10_0587	3.454e-133	437.0	COG3591@1|root,COG3591@2|Bacteria,1RE9Y@1224|Proteobacteria,2TSNE@28211|Alphaproteobacteria,43ZJ2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Trypsin-like serine protease	-	-	-	ko:K04775	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Trypsin
DYD3_k127_2747129_22	1161401.ASJA01000002_gene2699	1.25e-41	167.0	COG2840@1|root,COG2840@2|Bacteria,1RH34@1224|Proteobacteria,2UCM1@28211|Alphaproteobacteria,43Y87@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	smrA	-	-	-	-	-	-	-	-	-	-	-	Smr
DYD3_k127_2747129_15	1280954.HPO_08943	4.998e-58	227.0	COG2821@1|root,COG2821@2|Bacteria,1MXD4@1224|Proteobacteria,2TS5S@28211|Alphaproteobacteria,43X54@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG2821 Membrane-bound lytic murein transglycosylase	mltA	-	-	ko:K08304	-	-	-	-	ko00000,ko01000,ko01011	-	GH102	-	3D,MltA
DYD3_k127_2747129_19	1161401.ASJA01000002_gene2702	6.954e-52	192.0	COG4395@1|root,COG4395@2|Bacteria,1NCIX@1224|Proteobacteria,2TTDQ@28211|Alphaproteobacteria,43Y5I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	MA20_24770	-	-	-	-	-	-	-	-	-	-	-	Tim44
DYD3_k127_2747129_20	394221.Mmar10_2979	2.995e-49	180.0	COG1952@1|root,COG1952@2|Bacteria,1RI75@1224|Proteobacteria,2UBTB@28211|Alphaproteobacteria,43XUP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA	secB	GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705	-	ko:K03071	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044,ko03110	3.A.5	-	-	SecB
DYD3_k127_2747129_9	1161401.ASJA01000002_gene2704	2.117e-82	280.0	COG0847@1|root,COG0847@2|Bacteria,1MV8Z@1224|Proteobacteria,2TTFF@28211|Alphaproteobacteria,43XEQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	dnaQ	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234	2.7.7.7	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	RNase_T
DYD3_k127_2747129_14	1041147.AUFB01000015_gene979	7.206e-60	216.0	COG0237@1|root,COG0237@2|Bacteria,1RCXT@1224|Proteobacteria,2U765@28211|Alphaproteobacteria,4BCNM@82115|Rhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A	coaE	GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.24	ko:K00859	ko00770,ko01100,map00770,map01100	M00120	R00130	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	CoaE
DYD3_k127_2747129_11	269796.Rru_A3613	2.273e-66	245.0	COG0169@1|root,COG0169@2|Bacteria,1MVH4@1224|Proteobacteria,2TS99@28211|Alphaproteobacteria,2JPBD@204441|Rhodospirillales	204441|Rhodospirillales	E	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	aroE	-	1.1.1.25	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413	RC00206	ko00000,ko00001,ko00002,ko01000	-	-	-	Shikimate_DH,Shikimate_dh_N
DYD3_k127_2747129_21	314254.OA2633_10024	5.912e-45	183.0	COG0424@1|root,COG0424@2|Bacteria,1RDA9@1224|Proteobacteria,2U9H5@28211|Alphaproteobacteria,43XT7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Maf-like protein	maf	-	-	ko:K06287	-	-	-	-	ko00000	-	-	-	Maf
DYD3_k127_2747129_7	715226.ABI_04440	4.385e-106	351.0	COG1806@1|root,COG1806@2|Bacteria,1MUHU@1224|Proteobacteria,2TT66@28211|Alphaproteobacteria,2KFUV@204458|Caulobacterales	204458|Caulobacterales	S	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation	-	-	2.7.11.33,2.7.4.28	ko:K09773	-	-	-	-	ko00000,ko01000	-	-	-	Kinase-PPPase
DYD3_k127_2747129_8	1382303.JPOM01000001_gene1661	1.421e-104	349.0	COG0407@1|root,COG0407@2|Bacteria,1MUG1@1224|Proteobacteria,2TQQV@28211|Alphaproteobacteria,2KFZ4@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III	hemE	-	4.1.1.37	ko:K01599	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03197,R04972	RC00872	ko00000,ko00001,ko00002,ko01000	-	-	-	URO-D
DYD3_k127_2747129_5	394221.Mmar10_2972	1.26e-124	415.0	COG0276@1|root,COG0276@2|Bacteria,1MVR1@1224|Proteobacteria,2TSMS@28211|Alphaproteobacteria,43WGS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the ferrous insertion into protoporphyrin IX	hemH	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	4.99.1.1,4.99.1.9	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R00310,R11329	RC01012	ko00000,ko00001,ko00002,ko01000	-	-	-	Ferrochelatase
DYD3_k127_2747129_18	314254.OA2633_10044	3.941e-54	202.0	COG1981@1|root,COG1981@2|Bacteria,1RHGS@1224|Proteobacteria,2U987@28211|Alphaproteobacteria,43Y9T@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family (UPF0093)	MA20_24805	-	-	ko:K08973	-	-	-	-	ko00000	-	-	-	UPF0093
DYD3_k127_2747129_0	1123503.KB908056_gene2085	1.827e-231	724.0	COG1158@1|root,COG1158@2|Bacteria,1MUCF@1224|Proteobacteria,2TRB4@28211|Alphaproteobacteria,2KFVG@204458|Caulobacterales	204458|Caulobacterales	K	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template	rho	-	-	ko:K03628	ko03018,map03018	-	-	-	ko00000,ko00001,ko03019,ko03021	-	-	-	ATP-synt_ab,Rho_N,Rho_RNA_bind
DYD3_k127_2747129_2	272630.MexAM1_META1p2245	2.958e-142	459.0	COG0435@1|root,COG0435@2|Bacteria,1MV50@1224|Proteobacteria,2TRDE@28211|Alphaproteobacteria,1JT5Q@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	yqjG	GO:0003674,GO:0003824,GO:0004364,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016672,GO:0016740,GO:0016765,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748	1.8.5.7	ko:K07393	-	-	-	-	ko00000,ko01000	-	-	-	GST_C_2,GST_N_2
DYD3_k127_2787821_14	69395.JQLZ01000016_gene3978	1.113e-41	172.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,2KF9I@204458|Caulobacterales	204458|Caulobacterales	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	-	2.7.7.7	ko:K14162	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
DYD3_k127_2787821_1	366602.Caul_4462	1.29e-152	501.0	COG0389@1|root,COG0389@2|Bacteria,1MU5X@1224|Proteobacteria,2TQVR@28211|Alphaproteobacteria,2KFTX@204458|Caulobacterales	204458|Caulobacterales	L	Nucleotidyltransferase DNA polymerase involved in DNA repair	-	-	-	ko:K14161	-	-	-	-	ko00000,ko03400	-	-	-	IMS
DYD3_k127_2787821_16	714943.Mucpa_0281	2.512e-24	118.0	COG4544@1|root,COG4544@2|Bacteria,4NM9V@976|Bacteroidetes,1J160@117747|Sphingobacteriia	976|Bacteroidetes	S	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2787821_9	745310.G432_17635	2.45e-81	276.0	COG4566@1|root,COG4566@2|Bacteria,1R47Z@1224|Proteobacteria,2TSQS@28211|Alphaproteobacteria,2K3TI@204457|Sphingomonadales	204457|Sphingomonadales	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_2787821_15	627192.SLG_10730	1.814e-26	114.0	COG4566@1|root,COG4566@2|Bacteria,1MZ8E@1224|Proteobacteria,2UH87@28211|Alphaproteobacteria,2KCAQ@204457|Sphingomonadales	204457|Sphingomonadales	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_2787821_3	745310.G432_03685	1.036e-125	421.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,2K2HC@204457|Sphingomonadales	204457|Sphingomonadales	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_8
DYD3_k127_2787821_6	1408224.SAMCCGM7_c5195	2.502e-101	338.0	COG2267@1|root,COG2267@2|Bacteria,1PWCZ@1224|Proteobacteria,2U4MM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_2787821_2	450851.PHZ_c2785	1.542e-151	487.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,2KF9K@204458|Caulobacterales	204458|Caulobacterales	I	PFAM alpha beta hydrolase	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_2787821_5	1265313.HRUBRA_02024	1.827e-103	346.0	COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,1RMR8@1236|Gammaproteobacteria,1J5YA@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	P	Cation efflux family	-	-	-	-	-	-	-	-	-	-	-	-	Cation_efflux
DYD3_k127_2787821_11	1121033.AUCF01000001_gene2065	1.212e-67	254.0	COG1120@1|root,COG1120@2|Bacteria,1QPWJ@1224|Proteobacteria,2U1TK@28211|Alphaproteobacteria,2JS6G@204441|Rhodospirillales	204441|Rhodospirillales	HP	ATP-binding protein	-	-	3.6.3.34	ko:K02013	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.14	-	-	ABC_tran
DYD3_k127_2787821_4	1320556.AVBP01000003_gene3797	3.978e-117	392.0	COG0609@1|root,COG0609@2|Bacteria,1MV9W@1224|Proteobacteria,2TR9A@28211|Alphaproteobacteria,43I10@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	-	-	-	ko:K02015	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.14	-	-	FecCD
DYD3_k127_2787821_12	1320556.AVBP01000003_gene3796	2.922e-57	213.0	COG0614@1|root,COG0614@2|Bacteria,1RAUP@1224|Proteobacteria,2TUB0@28211|Alphaproteobacteria,43RFA@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Periplasmic binding protein	-	-	-	ko:K02016	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.14	-	-	Peripla_BP_2
DYD3_k127_2787821_17	1215092.PA6_013_00880	6.596e-12	71.0	2AS4S@1|root,31HHJ@2|Bacteria,1QF88@1224|Proteobacteria,1TCCS@1236|Gammaproteobacteria,1YK6Q@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	S	Protein of unknown function (DUF3325)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3325
DYD3_k127_2787821_8	454957.IA64_20130	4.047e-84	299.0	COG3182@1|root,COG3182@2|Bacteria,1MVET@1224|Proteobacteria,1RNR9@1236|Gammaproteobacteria,1X9HW@135614|Xanthomonadales	135614|Xanthomonadales	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
DYD3_k127_2787821_18	1333856.L686_13405	7.346e-07	55.0	2DNWZ@1|root,32ZKY@2|Bacteria,1N8JR@1224|Proteobacteria,1SHD5@1236|Gammaproteobacteria,1Z3M1@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF3649
DYD3_k127_2787821_0	1161401.ASJA01000001_gene236	8.291e-219	702.0	COG2304@1|root,COG2304@2|Bacteria,1PBVT@1224|Proteobacteria,2U3NK@28211|Alphaproteobacteria,43YWS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	von Willebrand factor (vWF) type A domain	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	VWA,VWA_2
DYD3_k127_2787821_13	1380391.JIAS01000013_gene3522	6.97e-42	166.0	COG1309@1|root,COG1309@2|Bacteria,1RI6S@1224|Proteobacteria,2VFKQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2787821_10	1121124.JNIX01000001_gene993	1.605e-78	280.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2TSWK@28211|Alphaproteobacteria,2KGCT@204458|Caulobacterales	204458|Caulobacterales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K18298,ko:K18901	-	M00641,M00698	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_2787821_7	1268622.AVS7_00561	1e-98	330.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2VHFI@28216|Betaproteobacteria,4ABU2@80864|Comamonadaceae	28216|Betaproteobacteria	V	Transporter, hydrophobe amphiphile efflux-1 (HAE1) family	bepE_1	-	-	ko:K18902	-	M00698	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_2798855_5	1479238.JQMZ01000001_gene2310	4.362e-20	93.0	COG1677@1|root,COG1677@2|Bacteria,1MYUP@1224|Proteobacteria,2V6Z9@28211|Alphaproteobacteria,43YPK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	COG1677 Flagellar hook-basal body protein	fliE	-	-	ko:K02408	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliE
DYD3_k127_2798855_3	394221.Mmar10_1937	8.603e-52	186.0	COG1558@1|root,COG1558@2|Bacteria,1RHI3@1224|Proteobacteria,2U94I@28211|Alphaproteobacteria,43YNR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgC	GO:0005575,GO:0005623,GO:0009288,GO:0009425,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464	-	ko:K02388	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_2798855_4	1121124.JNIX01000007_gene372	3.059e-31	127.0	COG1815@1|root,COG1815@2|Bacteria,1N1G1@1224|Proteobacteria,2UCJ4@28211|Alphaproteobacteria,2KH1U@204458|Caulobacterales	204458|Caulobacterales	N	Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flgB	-	-	ko:K02387	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod
DYD3_k127_2798855_6	1161401.ASJA01000004_gene2332	9.918e-17	85.0	COG3190@1|root,COG3190@2|Bacteria,1MZV2@1224|Proteobacteria,2V9BA@28211|Alphaproteobacteria,440E7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	flagellar	-	-	-	ko:K02418	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliO
DYD3_k127_2798855_1	1161401.ASJA01000004_gene2333	3.646e-93	321.0	COG1338@1|root,COG1338@2|Bacteria,1MVBU@1224|Proteobacteria,2TT93@28211|Alphaproteobacteria,43WBP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Plays a role in the flagellum-specific transport system	fliP	-	-	ko:K02419	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliP
DYD3_k127_2798855_0	1280944.HY17_09400	2.059e-131	441.0	COG1262@1|root,COG4249@1|root,COG1262@2|Bacteria,COG4249@2|Bacteria,1NQ5K@1224|Proteobacteria,2U2VJ@28211|Alphaproteobacteria,43ZFH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase,Peptidase_C14
DYD3_k127_2798855_2	1396141.BATP01000018_gene1558	1.098e-55	198.0	COG0500@1|root,COG2226@2|Bacteria	2|Bacteria	Q	methyltransferase	crtF	-	2.1.1.210	ko:K09846	ko00906,ko01100,map00906,map01100	-	R07521,R07524,R07527,R07529,R07533,R07535	RC00003,RC02082	ko00000,ko00001,ko01000	-	-	-	Dimerisation2,Methyltransf_2
DYD3_k127_2802535_10	593750.Metfor_1220	1.247e-57	211.0	2EUXG@1|root,2N57Z@2157|Archaea	2157|Archaea	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2802535_1	402881.Plav_2451	3.723e-202	637.0	COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,2TT67@28211|Alphaproteobacteria,1JN6J@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Alcohol dehydrogenase GroES-like domain	adhC	-	1.1.1.1,1.1.1.284	ko:K00121	ko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_2802535_19	1247963.JPHU01000002_gene2467	1.519e-06	59.0	2DMHT@1|root,32RN3@2|Bacteria,1N0KK@1224|Proteobacteria,2UCFK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	MA20_36130	-	-	-	-	-	-	-	-	-	-	-	PEGA
DYD3_k127_2802535_20	323097.Nham_1478	3.23e-05	51.0	2C6J4@1|root,2ZDBZ@2|Bacteria,1RHUG@1224|Proteobacteria,2U9TF@28211|Alphaproteobacteria,3JYMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PEGA
DYD3_k127_2802535_3	1346791.M529_00645	1.113e-111	379.0	COG0330@1|root,COG0330@2|Bacteria,1MWMD@1224|Proteobacteria,2U4RG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	prohibitin homologues	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
DYD3_k127_2802535_5	1280941.HY2_10950	2.25e-98	335.0	COG0477@1|root,COG0477@2|Bacteria,1R66J@1224|Proteobacteria,2U539@28211|Alphaproteobacteria,43ZDA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EGP	COG0477 Permeases of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_2802535_21	1220582.RRU01S_02_01110	8.185e-05	48.0	COG3237@1|root,COG3237@2|Bacteria,1NGW6@1224|Proteobacteria,2UJAV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the UPF0337 (CsbD) family	-	-	-	-	-	-	-	-	-	-	-	-	CsbD
DYD3_k127_2802535_12	1121949.AQXT01000002_gene2611	2.054e-43	181.0	28I6Z@1|root,2Z89U@2|Bacteria,1R8YM@1224|Proteobacteria,2V7U8@28211|Alphaproteobacteria,43ZPM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	von Willebrand factor (vWF) type A domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2802535_16	1279017.AQYJ01000028_gene2523	6.095e-18	98.0	28HC9@1|root,2Z7P5@2|Bacteria,1R4BH@1224|Proteobacteria,1RSAN@1236|Gammaproteobacteria,4642U@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2802535_8	316055.RPE_1617	1.301e-73	256.0	COG4292@1|root,COG4292@2|Bacteria,1MW5F@1224|Proteobacteria,2TQP4@28211|Alphaproteobacteria,3JQWR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial low temperature requirement A protein (LtrA)	ltrA	-	-	-	-	-	-	-	-	-	-	-	LtrA
DYD3_k127_2802535_13	1449049.JONW01000011_gene2401	5.362e-41	168.0	COG4292@1|root,COG4292@2|Bacteria,1MW5F@1224|Proteobacteria,2TQP4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Low temperature requirement A	ltrA	-	-	-	-	-	-	-	-	-	-	-	LtrA
DYD3_k127_2802535_17	311402.Avi_5686	7.392e-18	88.0	COG3609@1|root,COG3609@2|Bacteria	2|Bacteria	K	positive regulation of growth	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_2802535_14	391619.PGA1_262p00470	2.959e-35	138.0	COG3668@1|root,COG3668@2|Bacteria,1NC89@1224|Proteobacteria,2UHEP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Plasmid stabilization system	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2802535_9	1280952.HJA_16405	8.968e-58	206.0	COG4899@1|root,COG4899@2|Bacteria,1N9UQ@1224|Proteobacteria,2UE0S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2199)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2199
DYD3_k127_2802535_0	1479238.JQMZ01000001_gene1238	1.291e-268	880.0	COG0043@1|root,COG0043@2|Bacteria,1MU62@1224|Proteobacteria,2TTSQ@28211|Alphaproteobacteria,43YZV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	ubiD	-	4.1.1.98	ko:K03182	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04985,R04986	RC00391	ko00000,ko00001,ko00002,ko01000	-	-	-	UbiD
DYD3_k127_2802535_4	713587.THITH_08275	2.156e-98	340.0	COG1075@1|root,COG1075@2|Bacteria,1MXMP@1224|Proteobacteria,1RYZM@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	PGAP1
DYD3_k127_2802535_2	573065.Astex_2984	3.576e-179	576.0	COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,2TRNX@28211|Alphaproteobacteria,2KFWS@204458|Caulobacterales	204458|Caulobacterales	E	amino acid	-	-	-	ko:K03294	-	-	-	-	ko00000	2.A.3.2	-	-	AA_permease_2
DYD3_k127_2802535_18	1446473.JHWH01000014_gene2577	1.185e-17	87.0	COG2388@1|root,COG2388@2|Bacteria,1N6YS@1224|Proteobacteria,2UG30@28211|Alphaproteobacteria,2PXH2@265|Paracoccus	28211|Alphaproteobacteria	S	GCN5-related N-acetyl-transferase	-	-	-	ko:K06975	-	-	-	-	ko00000	-	-	-	Acetyltransf_CG
DYD3_k127_2802535_15	266834.SMc00656	1.306e-34	135.0	COG2388@1|root,COG2388@2|Bacteria,1N6YS@1224|Proteobacteria,2UG30@28211|Alphaproteobacteria,4BFH2@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase	-	-	-	ko:K06975	-	-	-	-	ko00000	-	-	-	Acetyltransf_CG
DYD3_k127_2802535_7	1161401.ASJA01000014_gene1066	7.981e-76	263.0	COG1024@1|root,COG1024@2|Bacteria,1Q67Q@1224|Proteobacteria,2U2T5@28211|Alphaproteobacteria,43XFD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_2802535_11	1054213.HMPREF9946_00581	4.022e-53	207.0	COG0122@1|root,COG0122@2|Bacteria,1MX9C@1224|Proteobacteria,2UA13@28211|Alphaproteobacteria,2JX9Y@204441|Rhodospirillales	204441|Rhodospirillales	L	endonuclease III	-	-	3.2.2.21	ko:K01247	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HhH-GPD
DYD3_k127_2802535_6	1161401.ASJA01000014_gene1057	1.44e-90	308.0	COG0382@1|root,COG0382@2|Bacteria,1MV4Q@1224|Proteobacteria,2TT3I@28211|Alphaproteobacteria,43WI6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate	ubiA	-	2.5.1.39	ko:K03179,ko:K06125	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117,M00128	R05000,R05615,R05616,R07273	RC00209,RC02895	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	UbiA
DYD3_k127_2803795_6	1280947.HY30_15760	1.098e-21	108.0	COG0739@1|root,COG0739@2|Bacteria,1Q5IC@1224|Proteobacteria,2V6QH@28211|Alphaproteobacteria,43XYN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_2803795_4	991905.SL003B_1554	6.357e-44	178.0	COG2318@1|root,COG2318@2|Bacteria,1RD3M@1224|Proteobacteria,2U8HG@28211|Alphaproteobacteria,4BSHH@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	DinB superfamily	-	-	-	-	-	-	-	-	-	-	-	-	DinB
DYD3_k127_2803795_2	1123059.KB823011_gene1495	4.216e-55	201.0	COG1738@1|root,COG1738@2|Bacteria,1RDSF@1224|Proteobacteria,2U7ZF@28211|Alphaproteobacteria,43XZI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	-	-	-	ko:K09125	-	-	-	-	ko00000	-	-	-	Vut_1
DYD3_k127_2803795_3	1122613.ATUP01000001_gene586	1.654e-46	176.0	COG0262@1|root,COG0262@2|Bacteria,1RH0P@1224|Proteobacteria,2U9GC@28211|Alphaproteobacteria,43XZE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis	folA	-	1.5.1.3	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	M00126,M00840	R00936,R00937,R00939,R00940,R02235,R02236,R11765	RC00109,RC00110,RC00158	ko00000,ko00001,ko00002,ko01000	-	-	-	DHFR_1
DYD3_k127_2803795_1	551275.KB899547_gene460	8.873e-61	230.0	2EHS2@1|root,33BHT@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF4189
DYD3_k127_2803795_5	582402.Hbal_0459	1.018e-36	150.0	COG1708@1|root,COG1708@2|Bacteria,1Q0DC@1224|Proteobacteria,2V8TV@28211|Alphaproteobacteria,44003@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	nucleotidyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2803795_0	1122962.AULH01000006_gene3202	2.738e-94	323.0	COG0489@1|root,COG0489@2|Bacteria,1MU7R@1224|Proteobacteria,2TRDM@28211|Alphaproteobacteria,36XEZ@31993|Methylocystaceae	28211|Alphaproteobacteria	D	Iron-sulfur cluster assembly protein	mrp	-	-	ko:K03593	-	-	-	-	ko00000,ko03029,ko03036	-	-	-	FeS_assembly_P,ParA
DYD3_k127_2831971_25	450851.PHZ_c3486	9.018e-12	71.0	COG0265@1|root,COG0265@2|Bacteria,1P55H@1224|Proteobacteria,2U4M5@28211|Alphaproteobacteria,2KFTT@204458|Caulobacterales	204458|Caulobacterales	O	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	-	-	-	-	-	-	-	-	-	-	-	-	Trypsin_2
DYD3_k127_2831971_20	69395.JQLZ01000014_gene4032	2.434e-25	112.0	COG3766@1|root,COG3766@2|Bacteria,1RJKS@1224|Proteobacteria,2UBJI@28211|Alphaproteobacteria,2KGQU@204458|Caulobacterales	204458|Caulobacterales	S	Domain of Unknown Function (DUF350)	-	-	-	ko:K08989	-	-	-	-	ko00000	-	-	-	DUF350
DYD3_k127_2831971_8	670292.JH26_13495	6.624e-109	362.0	COG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria,1JRPJ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM Patatin	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin
DYD3_k127_2831971_26	551789.ATVJ01000001_gene1195	0.0001219	51.0	2AFGM@1|root,315GY@2|Bacteria,1PVK6@1224|Proteobacteria,2V6Y3@28211|Alphaproteobacteria,43YJR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2831971_22	1280946.HY29_10870	4.475e-19	94.0	2FD28@1|root,3454Q@2|Bacteria,1P0UH@1224|Proteobacteria,2UV1E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2831971_15	1280946.HY29_10865	1.904e-61	223.0	COG1192@1|root,COG1192@2|Bacteria,1P1N2@1224|Proteobacteria,2UVNY@28211|Alphaproteobacteria,4404M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_31
DYD3_k127_2831971_17	394221.Mmar10_0029	1.371e-50	190.0	COG1670@1|root,COG1670@2|Bacteria,1N5NG@1224|Proteobacteria,2V94P@28211|Alphaproteobacteria,440I6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
DYD3_k127_2831971_21	43759.JNWK01000035_gene3291	5.822e-20	94.0	COG1670@1|root,COG1670@2|Bacteria,2IS7Y@201174|Actinobacteria	201174|Actinobacteria	J	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_2831971_2	1161401.ASJA01000013_gene689	1.422e-184	584.0	COG0820@1|root,COG0820@2|Bacteria,1MUYK@1224|Proteobacteria,2TQT3@28211|Alphaproteobacteria,43WI1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	rlmN	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360	2.1.1.192	ko:K06941	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Radical_SAM
DYD3_k127_2831971_19	509190.Cseg_0271	2.472e-26	113.0	COG5646@1|root,COG5646@2|Bacteria,1NKMZ@1224|Proteobacteria,2UJHW@28211|Alphaproteobacteria,2KJ5I@204458|Caulobacterales	204458|Caulobacterales	S	Domain of unknown function (DU1801)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
DYD3_k127_2831971_12	1479238.JQMZ01000001_gene199	8.63e-89	300.0	28PQS@1|root,2ZCCP@2|Bacteria,1NCXC@1224|Proteobacteria,2U2KV@28211|Alphaproteobacteria,43X0G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2831971_18	1247963.JPHU01000002_gene2533	2.591e-38	153.0	COG5342@1|root,COG5342@2|Bacteria,1R46Z@1224|Proteobacteria,2U5KW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	invasion associated locus B	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2831971_14	1123503.KB908056_gene2102	6.175e-79	269.0	COG0566@1|root,COG0566@2|Bacteria,1REIN@1224|Proteobacteria,2U76Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	rrna methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	SpoU_methylase
DYD3_k127_2831971_4	1161401.ASJA01000006_gene1977	6e-147	486.0	COG3540@1|root,COG3540@2|Bacteria,1MWAF@1224|Proteobacteria,2U0FQ@28211|Alphaproteobacteria,43WGM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG3540 Phosphodiesterase alkaline phosphatase D	-	-	3.1.3.1	ko:K01077,ko:K01113	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	-	-	-	PhoD,PhoD_N
DYD3_k127_2831971_13	1089552.KI911559_gene1689	1.089e-80	273.0	COG1309@1|root,COG1309@2|Bacteria,1RC7C@1224|Proteobacteria,2U5YR@28211|Alphaproteobacteria,2JSGT@204441|Rhodospirillales	204441|Rhodospirillales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2831971_5	402881.Plav_1107	8.614e-129	420.0	COG2040@1|root,COG2040@2|Bacteria,1MUXU@1224|Proteobacteria,2TURU@28211|Alphaproteobacteria,1JPWH@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Homocysteine S-methyltransferase	-	-	2.1.1.10	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	-	R00650	RC00003,RC00035	ko00000,ko00001,ko01000	-	-	-	S-methyl_trans
DYD3_k127_2831971_6	1123392.AQWL01000005_gene3147	2.452e-122	416.0	COG0577@1|root,COG0577@2|Bacteria,1PBKH@1224|Proteobacteria,2W3RM@28216|Betaproteobacteria,1KSVJ@119069|Hydrogenophilales	119069|Hydrogenophilales	V	MacB-like periplasmic core domain	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_2831971_9	56780.SYN_00853	2.973e-98	332.0	COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,42P96@68525|delta/epsilon subdivisions,2WJE9@28221|Deltaproteobacteria,2MQA4@213462|Syntrophobacterales	28221|Deltaproteobacteria	V	ABC transporter	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_2831971_11	1283300.ATXB01000002_gene2875	2.919e-95	327.0	COG0845@1|root,COG0845@2|Bacteria,1MU8D@1224|Proteobacteria,1RN0E@1236|Gammaproteobacteria,1XF94@135618|Methylococcales	135618|Methylococcales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K02005	-	-	-	-	ko00000	-	-	-	HlyD_D23
DYD3_k127_2831971_0	1458275.AZ34_02680	3.276e-227	730.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2VN4I@28216|Betaproteobacteria,4AC7B@80864|Comamonadaceae	28216|Betaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
DYD3_k127_2831971_16	1122613.ATUP01000001_gene1616	8.176e-58	224.0	COG0412@1|root,COG0412@2|Bacteria,1R5J6@1224|Proteobacteria,2UE6V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	dienelactone hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	DLH,Peptidase_S9
DYD3_k127_2831971_1	1469613.JT55_19140	1.286e-206	655.0	COG0138@1|root,COG0138@2|Bacteria,1MUDQ@1224|Proteobacteria,2TRMY@28211|Alphaproteobacteria,3FCS4@34008|Rhodovulum	28211|Alphaproteobacteria	F	AICARFT/IMPCHase bienzyme	purH	-	2.1.2.3,3.5.4.10	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	M00048	R01127,R04560	RC00026,RC00263,RC00456	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	AICARFT_IMPCHas,MGS
DYD3_k127_2831971_7	1121949.AQXT01000002_gene2418	5.821e-120	408.0	COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria,2TT4K@28211|Alphaproteobacteria,43W5U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	GM	Polysaccharide biosynthesis protein	capD	-	-	ko:K13013	-	-	-	-	ko00000,ko01005	-	-	-	CoA_binding_3,Polysacc_synt_2
DYD3_k127_2831971_3	394221.Mmar10_2926	3.457e-161	528.0	COG5360@1|root,COG5360@2|Bacteria,1MUJ4@1224|Proteobacteria,2TR5G@28211|Alphaproteobacteria,43X4M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Heparinase II/III-like protein	MA20_25080	-	-	-	-	-	-	-	-	-	-	-	Hepar_II_III
DYD3_k127_2831971_10	1123503.KB908056_gene2140	9.675e-96	323.0	COG0036@1|root,COG0036@2|Bacteria,1MUZM@1224|Proteobacteria,2TQKR@28211|Alphaproteobacteria,2KFA8@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the ribulose-phosphate 3-epimerase family	rpe	-	5.1.3.1	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01529	RC00540	ko00000,ko00001,ko00002,ko01000	-	-	-	Ribul_P_3_epim
DYD3_k127_2831971_23	1279038.KB907346_gene3266	1.11e-18	87.0	COG0144@1|root,COG0144@2|Bacteria,1MWPE@1224|Proteobacteria,2TSIA@28211|Alphaproteobacteria,2JQA7@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family	rsmB	-	2.1.1.176	ko:K03500	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltr_RsmB-F,NusB
DYD3_k127_2883463_17	69395.JQLZ01000003_gene290	2.29e-46	184.0	COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2TT0E@28211|Alphaproteobacteria,2KG9Z@204458|Caulobacterales	204458|Caulobacterales	O	Subtilase family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S8
DYD3_k127_2883463_19	1121861.KB899912_gene1040	1.316e-39	157.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2UBS6@28211|Alphaproteobacteria,2JTR9@204441|Rhodospirillales	204441|Rhodospirillales	K	Sigma-70, region 4	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_2883463_27	366602.Caul_4269	3.291e-18	94.0	COG5662@1|root,COG5662@2|Bacteria,1N1PB@1224|Proteobacteria,2VGMS@28211|Alphaproteobacteria,2KH75@204458|Caulobacterales	204458|Caulobacterales	K	AntiSigma factor	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2883463_26	279238.Saro_0829	2.965e-20	100.0	29TFP@1|root,30ENV@2|Bacteria,1RG86@1224|Proteobacteria,2UBEB@28211|Alphaproteobacteria,2K5KS@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Phenol_MetA_deg
DYD3_k127_2883463_29	391600.ABRU01000060_gene1425	2.824e-15	77.0	COG2003@1|root,COG2003@2|Bacteria,1MXZ5@1224|Proteobacteria,2TQXM@28211|Alphaproteobacteria,2KF7F@204458|Caulobacterales	28211|Alphaproteobacteria	E	Belongs to the UPF0758 family	radC	-	-	ko:K03630	-	-	-	-	ko00000	-	-	-	RadC
DYD3_k127_2883463_1	1280946.HY29_05875	6.95e-209	667.0	COG0784@1|root,COG3920@1|root,COG5002@1|root,COG0784@2|Bacteria,COG3920@2|Bacteria,COG5002@2|Bacteria,1NC9X@1224|Proteobacteria,2TZS2@28211|Alphaproteobacteria,440W5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	PAS domain	-	-	-	-	-	-	-	-	-	-	-	-	HWE_HK,PAS_4,Response_reg
DYD3_k127_2883463_9	404589.Anae109_1600	1.621e-96	325.0	COG2207@1|root,COG2207@2|Bacteria,1N0FA@1224|Proteobacteria	1224|Proteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	AraC_N,Cupin_6,HTH_18
DYD3_k127_2883463_8	471853.Bcav_0072	5.129e-101	340.0	COG2207@1|root,COG2207@2|Bacteria,2GJDC@201174|Actinobacteria	201174|Actinobacteria	K	Arac family	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_6,HTH_18
DYD3_k127_2883463_3	1318628.MARLIPOL_15929	7.19e-183	582.0	COG0277@1|root,COG0277@2|Bacteria,1MUPW@1224|Proteobacteria,1RRDD@1236|Gammaproteobacteria,4665V@72275|Alteromonadaceae	1236|Gammaproteobacteria	C	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	BBE,FAD_binding_4
DYD3_k127_2883463_25	1161401.ASJA01000001_gene542	3.019e-23	110.0	COG0342@1|root,COG0342@2|Bacteria,1MV5U@1224|Proteobacteria,2TQYG@28211|Alphaproteobacteria,43W7E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secD	-	-	ko:K03072,ko:K12257	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
DYD3_k127_2883463_6	1161401.ASJA01000008_gene1704	6.006e-114	380.0	COG1192@1|root,COG1192@2|Bacteria,1MWH3@1224|Proteobacteria,2U100@28211|Alphaproteobacteria,440T4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	VirC1 protein	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31,CbiA
DYD3_k127_2883463_34	1122179.KB890420_gene2428	1.302e-06	61.0	COG3409@1|root,COG3409@2|Bacteria	2|Bacteria	M	Peptidoglycan-binding domain 1 protein	-	-	-	-	-	-	-	-	-	-	-	-	PG_binding_1
DYD3_k127_2883463_4	1229204.AMYY01000001_gene2782	1.364e-148	477.0	COG3667@1|root,COG3667@2|Bacteria,1R6TA@1224|Proteobacteria,2U52R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	copper resistance	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2883463_33	633149.Bresu_2471	5.709e-09	66.0	COG3667@1|root,COG3667@2|Bacteria,1R6TA@1224|Proteobacteria,2U52R@28211|Alphaproteobacteria,2KG6I@204458|Caulobacterales	204458|Caulobacterales	P	copper resistance	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2883463_22	450851.PHZ_c1054	2.42e-33	130.0	COG1937@1|root,COG1937@2|Bacteria,1N9P2@1224|Proteobacteria,2UF3F@28211|Alphaproteobacteria,2KH4F@204458|Caulobacterales	204458|Caulobacterales	S	Metal-sensitive transcriptional repressor	-	-	-	ko:K21600	-	-	-	-	ko00000,ko03000	-	-	-	Trns_repr_metal
DYD3_k127_2883463_5	228405.HNE_0072	2.735e-132	436.0	COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2TS80@28211|Alphaproteobacteria,43ZHV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Transporter associated domain	tlyC	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03699	-	-	-	-	ko00000,ko02042	-	-	-	CBS,CorC_HlyC,DUF21
DYD3_k127_2883463_21	652103.Rpdx1_3361	8.864e-35	134.0	COG3093@1|root,COG3093@2|Bacteria,1N76J@1224|Proteobacteria,2UFXF@28211|Alphaproteobacteria,3K0DJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix	-	-	-	ko:K21498	-	-	-	-	ko00000,ko02048	-	-	-	HTH_3
DYD3_k127_2883463_0	288000.BBta_5353	1.888e-212	668.0	COG0015@1|root,COG0015@2|Bacteria,1MV4B@1224|Proteobacteria,2TQUE@28211|Alphaproteobacteria,3JSWI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	purB	GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.3.2.2	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048,M00049	R01083,R04559	RC00379,RC00444,RC00445	ko00000,ko00001,ko00002,ko01000	-	-	-	ADSL_C,Lyase_1
DYD3_k127_2883463_20	349521.HCH_03879	7.116e-38	147.0	COG1413@1|root,COG1413@2|Bacteria,1N3CU@1224|Proteobacteria,1SBWB@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2883463_23	1161401.ASJA01000006_gene2007	3.91e-30	128.0	2E521@1|root,32ZVA@2|Bacteria,1N9PP@1224|Proteobacteria,2UG1E@28211|Alphaproteobacteria,43Y16@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	zinc-ribbon domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF3426,zinc_ribbon_4
DYD3_k127_2883463_11	1479238.JQMZ01000001_gene155	3.97e-74	269.0	COG2884@1|root,COG2884@2|Bacteria,1MVQ4@1224|Proteobacteria,2TS9Y@28211|Alphaproteobacteria,43WPT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	cell division ATP-binding protein FtsE	ftsE	-	-	ko:K09812	ko02010,map02010	M00256	-	-	ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140	-	-	ABC_tran
DYD3_k127_2883463_14	394221.Mmar10_2375	3.497e-52	201.0	COG2177@1|root,COG2177@2|Bacteria,1MXKQ@1224|Proteobacteria,2TSNT@28211|Alphaproteobacteria,43XNZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Cell division protein	ftsX	-	-	ko:K09811	ko02010,map02010	M00256	-	-	ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140	-	-	-
DYD3_k127_2883463_18	1382303.JPOM01000001_gene2000	3.018e-43	165.0	COG1434@1|root,COG1434@2|Bacteria,1RHMV@1224|Proteobacteria,2U957@28211|Alphaproteobacteria,2KGI6@204458|Caulobacterales	204458|Caulobacterales	S	DUF218 domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF218
DYD3_k127_2883463_10	314254.OA2633_12285	2.45e-82	280.0	COG0204@1|root,COG0204@2|Bacteria,1MY51@1224|Proteobacteria,2TT3P@28211|Alphaproteobacteria,43XN8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase	plsC	-	2.3.1.51	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R02241,R09381	RC00004,RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyltransferase
DYD3_k127_2883463_30	1280948.HY36_03235	6.68e-13	79.0	COG4093@1|root,COG4093@2|Bacteria,1Q2AG@1224|Proteobacteria,2V9Q0@28211|Alphaproteobacteria,43YMY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2125)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2125
DYD3_k127_2883463_12	1297569.MESS2_1050014	2.042e-61	217.0	COG3865@1|root,COG3865@2|Bacteria,1N7IY@1224|Proteobacteria,2U993@28211|Alphaproteobacteria,43KH4@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	3-demethylubiquinone-9 3-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	3-dmu-9_3-mt
DYD3_k127_2883463_13	311403.Arad_3303	2.22e-58	209.0	COG3832@1|root,COG3832@2|Bacteria,1RD0P@1224|Proteobacteria,2U79U@28211|Alphaproteobacteria,4B804@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_2883463_28	1502724.FF80_03231	9.237e-17	88.0	COG2207@1|root,COG3708@1|root,COG2207@2|Bacteria,COG3708@2|Bacteria,1MWTF@1224|Proteobacteria,2TTWC@28211|Alphaproteobacteria,3N8K6@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	MA20_01270	-	-	ko:K13652,ko:K13653	-	-	-	-	ko00000,ko03000	-	-	-	GyrI-like,HTH_18
DYD3_k127_2883463_16	1151118.KB895791_gene1905	1.076e-46	175.0	COG3607@1|root,COG3607@2|Bacteria,2IKVS@201174|Actinobacteria,1WACI@1268|Micrococcaceae	201174|Actinobacteria	S	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	ko:K07032	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_2883463_32	392500.Swoo_3964	2.665e-09	65.0	2ESAQ@1|root,33JVE@2|Bacteria,1NMFW@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2883463_2	1380355.JNIJ01000005_gene2643	5.283e-204	641.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2TSNH@28211|Alphaproteobacteria,3JT2N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_04105	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_2883463_15	450851.PHZ_c3153	1.634e-48	179.0	COG3795@1|root,COG3795@2|Bacteria,1RJIJ@1224|Proteobacteria,2U967@28211|Alphaproteobacteria,2KIR6@204458|Caulobacterales	204458|Caulobacterales	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
DYD3_k127_2883463_7	378806.STAUR_1344	1.373e-110	369.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,42N5T@68525|delta/epsilon subdivisions,2X5FN@28221|Deltaproteobacteria	28221|Deltaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_FMN
DYD3_k127_2883463_24	1038858.AXBA01000051_gene708	1.075e-29	123.0	COG1902@1|root,COG1902@2|Bacteria	2|Bacteria	C	pentaerythritol trinitrate reductase activity	xenA	-	1.6.99.1	ko:K00354	-	-	R00282	RC00001	ko00000,ko01000	-	-	-	Oxidored_FMN
DYD3_k127_290484_8	1382305.AZUC01000018_gene49	8.779e-05	49.0	2DM16@1|root,319V6@2|Bacteria,1V5UE@1239|Firmicutes,4HHYY@91061|Bacilli,26F2J@186818|Planococcaceae	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_290484_5	383381.EH30_03435	5.26e-29	129.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,2K0B8@204457|Sphingomonadales	204457|Sphingomonadales	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
DYD3_k127_290484_4	1088721.NSU_4555	1.1e-44	168.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,2K0B8@204457|Sphingomonadales	204457|Sphingomonadales	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
DYD3_k127_290484_2	190650.CC_2390	2.548e-199	628.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,2KG04@204458|Caulobacterales	204458|Caulobacterales	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
DYD3_k127_290484_6	402881.Plav_0446	1.075e-26	113.0	2B9KW@1|root,322Z5@2|Bacteria,1RJJB@1224|Proteobacteria,2UAVD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_290484_9	1123267.JONN01000001_gene1414	0.0009344	46.0	2B9KW@1|root,322Z5@2|Bacteria,1RJJB@1224|Proteobacteria,2UAVD@28211|Alphaproteobacteria,2K6EC@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_290484_3	1292034.OR37_01084	4.485e-85	287.0	COG0605@1|root,COG0605@2|Bacteria,1R4Z3@1224|Proteobacteria,2U38P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Iron/manganese superoxide dismutases, C-terminal domain	chrC	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C
DYD3_k127_290484_7	1419583.V466_30370	1.992e-08	63.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_290484_0	1346791.M529_19815	3.872e-262	820.0	COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,2TSR0@28211|Alphaproteobacteria,2JZXX@204457|Sphingomonadales	204457|Sphingomonadales	Q	Oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase,NAD_binding_8
DYD3_k127_290484_1	366602.Caul_3942	1.164e-251	801.0	COG0457@1|root,COG0457@2|Bacteria,1MVMG@1224|Proteobacteria,2TSGE@28211|Alphaproteobacteria,2KFVS@204458|Caulobacterales	204458|Caulobacterales	S	Sulfotransferase	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_3,TPR_14,TPR_16,TPR_19,TPR_8
DYD3_k127_290957_7	1280947.HY30_02500	3.768e-14	75.0	2D25X@1|root,32TC5@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_290957_3	1280947.HY30_02495	9.606e-174	556.0	COG1696@1|root,COG1696@2|Bacteria,1MUXN@1224|Proteobacteria,2TRD1@28211|Alphaproteobacteria,43XFA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Membrane bound O-acyl transferase MBOAT family protein	algI	-	-	-	-	-	-	-	-	-	-	-	MBOAT
DYD3_k127_290957_8	281090.Lxx07400	1.423e-05	57.0	COG2755@1|root,COG2755@2|Bacteria,2IJ2E@201174|Actinobacteria,4FNR1@85023|Microbacteriaceae	201174|Actinobacteria	E	GDSL-like Lipase/Acylhydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
DYD3_k127_290957_2	314254.OA2633_01359	2.272e-243	773.0	COG0557@1|root,COG0557@2|Bacteria,1MUS6@1224|Proteobacteria,2TRC1@28211|Alphaproteobacteria,43WGE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	rnr	GO:0000175,GO:0003674,GO:0003724,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008408,GO:0008997,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016896,GO:0017111,GO:0019222,GO:0019439,GO:0034458,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575	-	ko:K12573	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	RNB,S1
DYD3_k127_290957_0	509190.Cseg_2783	0.0	1177.0	COG0550@1|root,COG1754@1|root,COG0550@2|Bacteria,COG1754@2|Bacteria,1MUFZ@1224|Proteobacteria,2TRGN@28211|Alphaproteobacteria,2KF1P@204458|Caulobacterales	204458|Caulobacterales	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	topA	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	Topoisom_bac,Toprim,Toprim_C_rpt,zf-C4_Topoisom
DYD3_k127_290957_5	1479238.JQMZ01000001_gene1576	3.589e-114	383.0	COG0758@1|root,COG0758@2|Bacteria,1MVF6@1224|Proteobacteria,2TRQE@28211|Alphaproteobacteria,43XAY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	LU	Rossmann fold nucleotide-binding protein involved in DNA uptake	dprA	-	-	ko:K04096	-	-	-	-	ko00000	-	-	-	DNA_processg_A
DYD3_k127_290957_6	1479238.JQMZ01000001_gene1577	1.011e-76	262.0	COG0344@1|root,COG0344@2|Bacteria,1RD4Z@1224|Proteobacteria,2U7BZ@28211|Alphaproteobacteria,43XKZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP	plsY	-	2.3.1.15	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	G3P_acyltransf
DYD3_k127_290957_1	1122137.AQXF01000003_gene1995	0.0	1045.0	COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2TRFB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the peptidase M16 family	-	-	-	ko:K07263	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M16,Peptidase_M16_C
DYD3_k127_290957_4	13690.CP98_05283	3.438e-130	427.0	COG1741@1|root,COG2801@1|root,COG2963@1|root,COG1741@2|Bacteria,COG2801@2|Bacteria,COG2963@2|Bacteria,1MWIP@1224|Proteobacteria,2TRHR@28211|Alphaproteobacteria,2K10E@204457|Sphingomonadales	204457|Sphingomonadales	L	Belongs to the pirin family	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin,Pirin_C
DYD3_k127_2914862_0	1392838.AWNM01000016_gene3237	7.568e-168	536.0	COG0155@1|root,COG0155@2|Bacteria,1MVVB@1224|Proteobacteria,2VIYX@28216|Betaproteobacteria,3T1UQ@506|Alcaligenaceae	28216|Betaproteobacteria	C	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate	cysI	-	1.8.1.2,1.8.7.1	ko:K00381,ko:K00392	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R00858,R00859,R03600	RC00065	ko00000,ko00001,ko00002,ko01000	-	-	-	NIR_SIR,NIR_SIR_ferr
DYD3_k127_2914862_3	398525.KB900701_gene2360	1.128e-35	152.0	COG3749@1|root,COG3749@2|Bacteria,1RJR9@1224|Proteobacteria,2UDH7@28211|Alphaproteobacteria,3JY89@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF934)	MA20_18215	-	-	-	-	-	-	-	-	-	-	-	DUF934
DYD3_k127_2914862_2	551789.ATVJ01000001_gene2632	1.452e-84	297.0	COG0175@1|root,COG0175@2|Bacteria,1MXUR@1224|Proteobacteria,2U5AP@28211|Alphaproteobacteria,43XHB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EH	Belongs to the PAPS reductase family. CysH subfamily	cysH	-	1.8.4.10,1.8.4.8	ko:K00390	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R02021	RC00007,RC02862	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF934,PAPS_reduct
DYD3_k127_2914862_1	1479238.JQMZ01000001_gene2356	3.912e-105	347.0	COG1018@1|root,COG1018@2|Bacteria,1MW37@1224|Proteobacteria,2TVXU@28211|Alphaproteobacteria,43WHB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	fpr	-	1.18.1.2,1.19.1.1	ko:K00528	-	-	R10159	-	ko00000,ko01000	-	-	-	FAD_binding_6,NAD_binding_1
DYD3_k127_2914862_4	1187851.A33M_2942	5.617e-27	118.0	COG2068@1|root,COG2068@2|Bacteria,1MW0X@1224|Proteobacteria,2TR5D@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Molybdopterin	MA20_09420	-	2.7.7.76	ko:K07141	ko00790,map00790	-	R11582	-	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,NTP_transf_3
DYD3_k127_2937212_1	402881.Plav_1712	5.312e-205	656.0	COG4547@1|root,COG4547@2|Bacteria,1MX11@1224|Proteobacteria,2TS4N@28211|Alphaproteobacteria,1JNBB@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	Cobalamin biosynthesis protein CobT VWA domain	cobT	-	6.6.1.2	ko:K09883	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobT,CobT_C
DYD3_k127_2937212_4	1123269.NX02_27645	4.06e-151	496.0	COG2267@1|root,COG3629@1|root,COG2267@2|Bacteria,COG3629@2|Bacteria,1QU9N@1224|Proteobacteria,2TW44@28211|Alphaproteobacteria,2K7FJ@204457|Sphingomonadales	204457|Sphingomonadales	IT	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_2937212_9	450851.PHZ_c1673	1.359e-88	306.0	2CCCK@1|root,2Z7UH@2|Bacteria,1R3SV@1224|Proteobacteria,2UH90@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2937212_2	1161401.ASJA01000014_gene1032	5.466e-171	557.0	COG0714@1|root,COG0714@2|Bacteria,1MXIW@1224|Proteobacteria,2TS1Z@28211|Alphaproteobacteria,43W7S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	cobaltochelatase subunit CobS	cobS	-	6.6.1.2	ko:K09882	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	AAA_5,CbbQ_C,CobS_N
DYD3_k127_2937212_16	394221.Mmar10_2278	2.128e-58	209.0	COG2214@1|root,COG2214@2|Bacteria,1MXTG@1224|Proteobacteria,2TRZH@28211|Alphaproteobacteria,43Y1F@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG2214 DnaJ-class molecular chaperone	-	-	-	-	-	-	-	-	-	-	-	-	DnaJ
DYD3_k127_2937212_23	1280950.HJO_11367	7.884e-23	110.0	COG0271@1|root,COG0271@2|Bacteria,1MZG5@1224|Proteobacteria,2UF6U@28211|Alphaproteobacteria,43YKE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Belongs to the BolA IbaG family	bolA	GO:0006807,GO:0008150,GO:0008152,GO:0010467,GO:0019538,GO:0043170,GO:0044238,GO:0051604,GO:0071704,GO:0097428,GO:0106035,GO:1901564	-	ko:K05527,ko:K22066	-	-	-	-	ko00000,ko03000,ko03029	-	-	-	BolA
DYD3_k127_2937212_11	1005048.CFU_2946	6.771e-75	262.0	COG1131@1|root,COG1131@2|Bacteria,1MY19@1224|Proteobacteria,2W992@28216|Betaproteobacteria,476PH@75682|Oxalobacteraceae	28216|Betaproteobacteria	V	ATPases associated with a variety of cellular activities	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_2937212_17	443143.GM18_1315	4.342e-48	189.0	2AEFS@1|root,314AU@2|Bacteria,1RKTV@1224|Proteobacteria,42YDD@68525|delta/epsilon subdivisions,2WUI4@28221|Deltaproteobacteria	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2937212_14	1038858.AXBA01000023_gene474	2.515e-64	251.0	COG1793@1|root,COG1793@2|Bacteria,1MV3S@1224|Proteobacteria,2TRQ9@28211|Alphaproteobacteria,3EYJ2@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	ATP dependent DNA ligase C terminal region	lig	-	6.5.1.1,6.5.1.6,6.5.1.7	ko:K10747	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00381,R00382,R10822,R10823	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N
DYD3_k127_2937212_0	1161401.ASJA01000032_gene3031	9.758e-216	699.0	COG2978@1|root,COG2978@2|Bacteria,1MUJ1@1224|Proteobacteria,2U1AP@28211|Alphaproteobacteria,43WAR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	AbgT putative transporter family	-	-	-	ko:K12942	-	-	-	-	ko00000	-	-	-	ABG_transport
DYD3_k127_2937212_13	1123503.KB908056_gene1546	4.581e-65	231.0	29525@1|root,2ZSEY@2|Bacteria,1RF0P@1224|Proteobacteria,2U90Q@28211|Alphaproteobacteria,2KGM5@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2937212_19	744980.TRICHSKD4_5236	5.071e-35	137.0	COG1733@1|root,COG1733@2|Bacteria,1MZ6N@1224|Proteobacteria,2UC19@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_2937212_10	1384054.N790_14220	3.066e-84	291.0	COG0491@1|root,COG0491@2|Bacteria,1P5NJ@1224|Proteobacteria,1S04Y@1236|Gammaproteobacteria,1XBW9@135614|Xanthomonadales	135614|Xanthomonadales	S	Metallo-beta-lactamase superfamily	-	-	3.5.2.6	ko:K17837	ko01501,map01501	-	R06363	RC01499	ko00000,ko00001,ko01000	-	-	-	Lactamase_B
DYD3_k127_2937212_28	861299.J421_6107	4.319e-13	74.0	2CIH2@1|root,2ZTG0@2|Bacteria	2|Bacteria	S	Putative lumazine-binding	-	-	-	-	-	-	-	-	-	-	-	-	Lumazine_bd_2
DYD3_k127_2937212_26	69395.JQLZ01000001_gene3399	2.859e-15	78.0	2C8F7@1|root,33A2N@2|Bacteria,1NH9E@1224|Proteobacteria,2UJFC@28211|Alphaproteobacteria,2KHJ3@204458|Caulobacterales	204458|Caulobacterales	S	Hypoxia induced protein conserved region	-	-	-	-	-	-	-	-	-	-	-	-	HIG_1_N
DYD3_k127_2937212_3	1161401.ASJA01000001_gene244	3.101e-161	518.0	COG4638@1|root,COG4638@2|Bacteria,1MV2G@1224|Proteobacteria,2TT1V@28211|Alphaproteobacteria,43WZM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
DYD3_k127_2937212_15	314254.OA2633_12390	1.896e-60	220.0	COG0697@1|root,COG0697@2|Bacteria,1RCED@1224|Proteobacteria,2U66Q@28211|Alphaproteobacteria,43XTY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EG	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_2937212_8	1382303.JPOM01000001_gene2461	1.537e-108	360.0	COG0008@1|root,COG0008@2|Bacteria,1MUN7@1224|Proteobacteria,2TR2V@28211|Alphaproteobacteria,2KF9H@204458|Caulobacterales	204458|Caulobacterales	J	Belongs to the class-I aminoacyl-tRNA synthetase family	-	-	-	ko:K01894	-	-	-	-	ko00000,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_2937212_20	114615.BRADO6557	1.588e-34	140.0	COG1309@1|root,COG1309@2|Bacteria,1N7BY@1224|Proteobacteria,2UIEW@28211|Alphaproteobacteria,3K1BC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
DYD3_k127_2937212_7	667632.KB890164_gene1777	1.4e-110	375.0	COG3670@1|root,COG3670@2|Bacteria,1MY1X@1224|Proteobacteria,2VNAE@28216|Betaproteobacteria,1KH7W@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	dioxygenase	-	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_2937212_5	1161401.ASJA01000012_gene867	2.848e-136	443.0	COG2204@1|root,COG2204@2|Bacteria,1MWW5@1224|Proteobacteria,2TXAZ@28211|Alphaproteobacteria,43X5S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	pspF	-	-	ko:K03974	-	-	-	-	ko00000,ko03000	-	-	-	HTH_8,Sigma54_activat
DYD3_k127_2937212_12	1161401.ASJA01000012_gene865	9.062e-74	256.0	COG1842@1|root,COG1842@2|Bacteria,1NC7S@1224|Proteobacteria,2U6CN@28211|Alphaproteobacteria,43WGF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KT	also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF	pspA	-	-	ko:K03969	-	-	-	-	ko00000	-	-	-	PspA_IM30
DYD3_k127_2937212_25	1207058.L53_13235	1.035e-18	88.0	2EH78@1|root,33AZ2@2|Bacteria,1NJ6T@1224|Proteobacteria,2UMFP@28211|Alphaproteobacteria,43YPE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Phage shock protein B	-	-	-	ko:K03970	-	-	-	-	ko00000,ko02048	-	-	-	PspB
DYD3_k127_2937212_27	392499.Swit_2938	7.668e-14	78.0	2EH78@1|root,33AZ2@2|Bacteria,1NJ6T@1224|Proteobacteria,2UMFP@28211|Alphaproteobacteria,2KE6V@204457|Sphingomonadales	204457|Sphingomonadales	S	Phage shock protein B	-	-	-	ko:K03970	-	-	-	-	ko00000,ko02048	-	-	-	PspB
DYD3_k127_2937212_31	414684.RC1_2516	3.242e-05	49.0	2CJWQ@1|root,32C05@2|Bacteria,1Q6G6@1224|Proteobacteria,2VCM2@28211|Alphaproteobacteria,2JUC8@204441|Rhodospirillales	204441|Rhodospirillales	S	Phage shock protein B	-	-	-	ko:K03970	-	-	-	-	ko00000,ko02048	-	-	-	PspB
DYD3_k127_2937212_30	945550.VISI1226_19861	5.099e-07	54.0	2CJWQ@1|root,32YI2@2|Bacteria,1N769@1224|Proteobacteria,1SCNV@1236|Gammaproteobacteria,1XYAE@135623|Vibrionales	135623|Vibrionales	S	Phage shock protein B	pspB	-	-	ko:K03970	-	-	-	-	ko00000,ko02048	-	-	-	PspB
DYD3_k127_2937212_18	1161401.ASJA01000012_gene862	6.027e-39	149.0	COG1983@1|root,COG1983@2|Bacteria,1NECC@1224|Proteobacteria,2UEYZ@28211|Alphaproteobacteria,43Y1I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KT	phage shock protein C	-	-	-	ko:K03973	-	-	-	-	ko00000,ko02048,ko03000	-	-	-	PspC
DYD3_k127_2937212_6	1161401.ASJA01000012_gene859	1.148e-119	407.0	COG0665@1|root,COG4121@1|root,COG0665@2|Bacteria,COG4121@2|Bacteria,1MZW5@1224|Proteobacteria,2TUNX@28211|Alphaproteobacteria,43W5S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34	mnmC	-	2.1.1.61	ko:K15461	-	-	R00601,R08702	RC00003,RC00053,RC00060,RC01483	ko00000,ko01000,ko03016	-	-	-	DAO,Methyltransf_30
DYD3_k127_2937212_24	1121949.AQXT01000002_gene2141	1.489e-21	100.0	2E4P4@1|root,32ZHW@2|Bacteria,1N9SK@1224|Proteobacteria,2UFQ7@28211|Alphaproteobacteria,43Y7W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2937212_22	1123503.KB908057_gene2549	7.16e-24	115.0	COG3750@1|root,COG3750@2|Bacteria,1N77J@1224|Proteobacteria,2UFX6@28211|Alphaproteobacteria,2KGZ7@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the UPF0335 family	-	-	-	-	-	-	-	-	-	-	-	-	DUF2312
DYD3_k127_2937212_21	1123503.KB908057_gene2550	8.928e-34	141.0	2DP3D@1|root,330CN@2|Bacteria,1NC6N@1224|Proteobacteria,2UGME@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2943980_2	493475.GARC_1735	2.404e-199	644.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,1RN5D@1236|Gammaproteobacteria,4663U@72275|Alteromonadaceae	1236|Gammaproteobacteria	G	COG4993 Glucose dehydrogenase	exaA	-	1.1.2.8,1.1.5.5,1.1.9.1	ko:K00114,ko:K17760,ko:K22473	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285,R09479	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_2943980_1	702113.PP1Y_AT11547	6.84e-227	723.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_2943980_0	1192759.AKIB01000026_gene2163	2.189e-238	757.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_2943980_6	639283.Snov_0805	3.137e-118	393.0	COG0507@1|root,COG0507@2|Bacteria,1QCFP@1224|Proteobacteria,2V5WD@28211|Alphaproteobacteria,3EY6D@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	Helicase	-	-	-	-	-	-	-	-	-	-	-	-	Herpes_Helicase,PIF1
DYD3_k127_2943980_12	1298858.AUEL01000019_gene3166	1.273e-08	64.0	COG4113@1|root,COG4113@2|Bacteria,1N96B@1224|Proteobacteria,2UCVY@28211|Alphaproteobacteria,43M4H@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_2943980_13	391600.ABRU01000056_gene498	7.675e-07	54.0	COG4118@1|root,COG4118@2|Bacteria,1PUIC@1224|Proteobacteria,2V662@28211|Alphaproteobacteria,2KJK2@204458|Caulobacterales	204458|Caulobacterales	D	Antitoxin Phd_YefM, type II toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_2943980_3	1161401.ASJA01000004_gene2178	1.223e-170	548.0	COG1473@1|root,COG1473@2|Bacteria,1MX6N@1224|Proteobacteria,2TRSE@28211|Alphaproteobacteria,43WF5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Peptidase dimerisation domain	-	-	-	ko:K12941	-	-	-	-	ko00000,ko01002	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_2943980_10	1097668.BYI23_C001740	6.194e-35	141.0	COG1611@1|root,COG1611@2|Bacteria,1NG6A@1224|Proteobacteria,2WGAX@28216|Betaproteobacteria,1KIC5@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Belongs to the LOG family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2943980_9	1207058.L53_11610	3.126e-36	157.0	2DI6Z@1|root,30274@2|Bacteria,1PUTZ@1224|Proteobacteria,2V6CC@28211|Alphaproteobacteria,43ZNT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2943980_5	1449049.JONW01000005_gene1393	1.819e-156	506.0	COG0397@1|root,COG0397@2|Bacteria,1MVK3@1224|Proteobacteria,2TT84@28211|Alphaproteobacteria,2KF22@204458|Caulobacterales	204458|Caulobacterales	S	Uncharacterized ACR, YdiU/UPF0061 family	-	-	-	-	-	-	-	-	-	-	-	-	UPF0061
DYD3_k127_2943980_11	1280954.HPO_09845	9.511e-26	115.0	2FFMV@1|root,347J9@2|Bacteria,1NPGU@1224|Proteobacteria,2UJYC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2943980_7	314278.NB231_12094	1.139e-62	222.0	COG0454@1|root,COG0456@2|Bacteria,1RIAQ@1224|Proteobacteria	1224|Proteobacteria	K	N-acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_7
DYD3_k127_2943980_4	472759.Nhal_1807	3.819e-162	539.0	COG4206@1|root,COG4206@2|Bacteria,1QUWU@1224|Proteobacteria,1RN8R@1236|Gammaproteobacteria	1236|Gammaproteobacteria	H	receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_2943980_8	1340493.JNIF01000003_gene3442	8.611e-50	188.0	COG3386@1|root,COG3386@2|Bacteria	2|Bacteria	G	gluconolactonase activity	-	-	-	-	-	-	-	-	-	-	-	-	He_PIG,NHL,SGL
DYD3_k127_2963694_0	946235.CAER01000008_gene395	1.678e-189	608.0	COG4993@1|root,COG4993@2|Bacteria,1V091@1239|Firmicutes,4HCPE@91061|Bacilli	91061|Bacilli	CG	PQQ enzyme repeat	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_2963694_2	1088721.NSU_1603	2.102e-112	397.0	COG3670@1|root,COG3670@2|Bacteria,1NR29@1224|Proteobacteria,2UNTM@28211|Alphaproteobacteria,2K8W8@204457|Sphingomonadales	204457|Sphingomonadales	C	Retinal pigment epithelial membrane protein	-	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_2963694_1	1316936.K678_07288	9.122e-168	540.0	COG0773@1|root,COG0773@2|Bacteria,1MVCG@1224|Proteobacteria,2TTDN@28211|Alphaproteobacteria,2JVB2@204441|Rhodospirillales	204441|Rhodospirillales	M	Mur ligase family, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_2963694_5	314260.PB2503_03947	1.463e-56	208.0	COG1619@1|root,COG1619@2|Bacteria,1MWIY@1224|Proteobacteria,2U0U5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	proteins, homologs of microcin C7 resistance protein MccF	-	-	3.4.17.13	ko:K01297	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Peptidase_S66
DYD3_k127_2963694_6	1247963.JPHU01000010_gene2243	3.259e-56	214.0	COG0771@1|root,COG0771@2|Bacteria,1MVYD@1224|Proteobacteria,2TTE8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	murD	-	6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase_C,Mur_ligase_M
DYD3_k127_2963694_3	1247963.JPHU01000010_gene2244	5.499e-85	310.0	COG1365@1|root,COG1365@2|Bacteria,1R62V@1224|Proteobacteria,2U5QY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2963694_4	627192.SLG_20080	1.456e-61	238.0	COG1028@1|root,COG1028@2|Bacteria,1R4GG@1224|Proteobacteria,2TV1Y@28211|Alphaproteobacteria,2KCNM@204457|Sphingomonadales	204457|Sphingomonadales	IQ	KR domain	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_2963694_8	1035191.HMPREF0185_01159	1.39e-20	107.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
DYD3_k127_2963694_7	627192.SLG_09960	2.031e-39	168.0	28JPA@1|root,2Z9FC@2|Bacteria,1PN1F@1224|Proteobacteria,2TSKX@28211|Alphaproteobacteria,2KC8M@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2970217_5	633149.Bresu_1043	8.755e-81	275.0	COG0141@1|root,COG0141@2|Bacteria,1MUUF@1224|Proteobacteria,2TSBN@28211|Alphaproteobacteria,2KEYD@204458|Caulobacterales	204458|Caulobacterales	E	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine	hisD	-	1.1.1.23	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01158,R01163,R03012	RC00099,RC00242,RC00463	ko00000,ko00001,ko00002,ko01000	-	-	-	Histidinol_dh
DYD3_k127_2970217_2	1123267.JONN01000001_gene1191	1.34e-129	443.0	COG0079@1|root,COG0131@1|root,COG0079@2|Bacteria,COG0131@2|Bacteria,1MWBS@1224|Proteobacteria,2TTVV@28211|Alphaproteobacteria,2K1TW@204457|Sphingomonadales	204457|Sphingomonadales	E	Imidazoleglycerol-phosphate dehydratase	hisB	-	4.2.1.19	ko:K01693	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R03457	RC00932	ko00000,ko00001,ko00002,ko01000	-	-	-	IGPD
DYD3_k127_2970217_8	1161401.ASJA01000012_gene834	8.253e-64	225.0	COG0118@1|root,COG0118@2|Bacteria,1MU4X@1224|Proteobacteria,2TTT4@28211|Alphaproteobacteria,43XY5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR	hisH	-	-	ko:K02501	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04558	RC00010,RC01190,RC01943	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase
DYD3_k127_2970217_6	633149.Bresu_1040	2.197e-76	272.0	COG0106@1|root,COG0106@2|Bacteria,1MW6S@1224|Proteobacteria,2TRSG@28211|Alphaproteobacteria,2KH26@204458|Caulobacterales	204458|Caulobacterales	E	1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase	hisA	-	5.3.1.16	ko:K01814	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04640	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	His_biosynth
DYD3_k127_2970217_3	1163407.UU7_02452	1.263e-110	363.0	COG0107@1|root,COG0107@2|Bacteria,1MUS0@1224|Proteobacteria,1RPJQ@1236|Gammaproteobacteria,1X39D@135614|Xanthomonadales	135614|Xanthomonadales	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit	hisF	GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763	-	ko:K02500	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04558	RC00010,RC01190,RC01943	ko00000,ko00001,ko00002,ko01000	-	-	-	His_biosynth
DYD3_k127_2970217_7	511062.GU3_09980	2.473e-68	243.0	COG0139@1|root,COG0140@1|root,COG0139@2|Bacteria,COG0140@2|Bacteria,1MW67@1224|Proteobacteria,1RMV4@1236|Gammaproteobacteria,1Y3HC@135624|Aeromonadales	135624|Aeromonadales	E	Belongs to the PRA-CH family	hisI	-	3.5.4.19,3.6.1.31	ko:K11755	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04035,R04037	RC00002,RC01055	ko00000,ko00001,ko00002,ko01000	-	-	-	PRA-CH,PRA-PH
DYD3_k127_2970217_11	314260.PB2503_08779	1.027e-35	140.0	COG1605@1|root,COG1605@2|Bacteria	2|Bacteria	E	Chorismate mutase	pchB	-	4.2.99.21,5.4.99.5	ko:K04092,ko:K04782	ko00400,ko01053,ko01100,ko01110,ko01130,ko01230,map00400,map01053,map01100,map01110,map01130,map01230	M00024,M00025	R01715,R06602	RC01549,RC02148,RC03116	ko00000,ko00001,ko00002,ko01000	-	-	-	CM_2
DYD3_k127_2970217_4	1333998.M2A_1694	1.019e-108	372.0	COG4623@1|root,COG4623@2|Bacteria,1MWDS@1224|Proteobacteria,2U0H9@28211|Alphaproteobacteria,4BQZG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella	mltF	GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944	-	ko:K18691	-	-	-	-	ko00000,ko01000,ko01011	-	-	-	SBP_bac_3,SLT
DYD3_k127_2970217_0	1382303.JPOM01000001_gene1220	1.45e-279	884.0	COG0308@1|root,COG0308@2|Bacteria,1MUCI@1224|Proteobacteria,2TRUM@28211|Alphaproteobacteria,2KFB1@204458|Caulobacterales	204458|Caulobacterales	E	aminopeptidase N	pepN	-	3.4.11.2	ko:K01256	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	DUF3458,DUF3458_C,Peptidase_M1
DYD3_k127_2970217_9	551789.ATVJ01000004_gene410	3.15e-60	213.0	COG0784@1|root,COG0784@2|Bacteria,1N0NS@1224|Proteobacteria,2TV2S@28211|Alphaproteobacteria,43XZY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,cNMP_binding
DYD3_k127_2970217_1	1123503.KB908058_gene964	1.834e-228	734.0	COG2202@1|root,COG5002@1|root,COG2202@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2TWEB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Histidine kinase	-	-	2.7.13.3	ko:K07716	ko02020,ko04112,map02020,map04112	M00511	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_7
DYD3_k127_2970217_15	314285.KT71_06894	4.668e-07	61.0	2DW32@1|root,33YBA@2|Bacteria,1PWME@1224|Proteobacteria,1SP4S@1236|Gammaproteobacteria,1JAGK@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	Heavy-metal resistance	-	-	-	-	-	-	-	-	-	-	-	-	Metal_resist
DYD3_k127_2970217_14	626418.bglu_2g19170	2e-09	64.0	2EG2K@1|root,339UJ@2|Bacteria,1NG8N@1224|Proteobacteria,2VYZR@28216|Betaproteobacteria,1K7Y4@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2970217_10	1229204.AMYY01000003_gene970	2.751e-56	211.0	COG1595@1|root,COG1595@2|Bacteria,1MX7T@1224|Proteobacteria,2U5A1@28211|Alphaproteobacteria,4BSSY@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Sigma-70, region 4	sigE	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_2970217_13	1161401.ASJA01000015_gene958	1.235e-29	123.0	COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,2TRY7@28211|Alphaproteobacteria,43WTT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell	glnE	GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090	2.7.7.42,2.7.7.89	ko:K00982	-	-	-	-	ko00000,ko01000	-	-	-	GlnD_UR_UTase,GlnE
DYD3_k127_2971773_5	378806.STAUR_6291	5.44e-39	154.0	COG0640@1|root,COG0640@2|Bacteria,1N7VH@1224|Proteobacteria	1224|Proteobacteria	K	regulatory protein, arsR	MA20_27670	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
DYD3_k127_2971773_3	1304878.AUGD01000002_gene2032	3.531e-67	235.0	COG3832@1|root,COG3832@2|Bacteria,1R68R@1224|Proteobacteria,2TTYQ@28211|Alphaproteobacteria,3JT78@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_2971773_0	1411123.JQNH01000001_gene2320	3.198e-298	928.0	COG1154@1|root,COG1154@2|Bacteria,1MUSJ@1224|Proteobacteria,2TRDD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)	dxs	-	2.2.1.7	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	M00096	R05636	RC00032	ko00000,ko00001,ko00002,ko01000	-	-	-	DXP_synthase_N,Transket_pyr,Transketolase_C
DYD3_k127_2971773_1	1161401.ASJA01000001_gene299	7.739e-118	394.0	COG0142@1|root,COG0142@2|Bacteria,1MWNG@1224|Proteobacteria,2TR79@28211|Alphaproteobacteria,43X3Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Belongs to the FPP GGPP synthase family	ispA	GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576	2.5.1.1,2.5.1.10	ko:K00795	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364	R01658,R02003	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	polyprenyl_synt
DYD3_k127_2971773_6	190650.CC_2070	2.473e-25	107.0	COG1722@1|root,COG1722@2|Bacteria,1PTYQ@1224|Proteobacteria,2UFD6@28211|Alphaproteobacteria,2KH8R@204458|Caulobacterales	204458|Caulobacterales	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	xseB	-	3.1.11.6	ko:K03602	ko03430,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_VII_S
DYD3_k127_2971773_4	1161401.ASJA01000001_gene302	1.399e-58	210.0	COG0406@1|root,COG0406@2|Bacteria,1N0M0@1224|Proteobacteria,2VCCJ@28211|Alphaproteobacteria,43XMN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Histidine phosphatase superfamily (branch 1)	-	-	-	-	-	-	-	-	-	-	-	-	His_Phos_1
DYD3_k127_2971773_2	1207063.P24_07534	3.296e-103	344.0	COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2TSX9@28211|Alphaproteobacteria,2JPCE@204441|Rhodospirillales	204441|Rhodospirillales	BQ	COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein	-	-	-	-	-	-	-	-	-	-	-	-	Hist_deacetyl
DYD3_k127_2990014_1	1207058.L53_06825	4.179e-64	231.0	COG1943@1|root,COG1943@2|Bacteria,1RCWW@1224|Proteobacteria,2U5BB@28211|Alphaproteobacteria,43ZV4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_2990014_0	1280954.HPO_00940	2.015e-192	606.0	COG2081@1|root,COG2081@2|Bacteria,1MUGC@1224|Proteobacteria,2TR1K@28211|Alphaproteobacteria,43WEI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	HI0933-like protein	-	-	-	ko:K07007	-	-	-	-	ko00000	-	-	-	HI0933_like
DYD3_k127_3009905_6	1088721.NSU_1602	5.46e-89	303.0	2BTBM@1|root,32NHB@2|Bacteria,1NTWT@1224|Proteobacteria,2UQ3K@28211|Alphaproteobacteria,2K9B9@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3009905_11	1488328.JMCL01000081_gene1052	8.819e-34	138.0	COG0251@1|root,COG0251@2|Bacteria,1RK2W@1224|Proteobacteria,1SEJ6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	J	endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_3009905_4	1280950.HJO_06675	2.228e-106	359.0	COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,2TRPM@28211|Alphaproteobacteria,43WDV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	HlyD_D23
DYD3_k127_3009905_0	1280947.HY30_08475	0.0	1526.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,43X0I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_3009905_8	1380350.JIAP01000008_gene2113	2.424e-52	189.0	COG2764@1|root,COG2764@2|Bacteria,1RF2S@1224|Proteobacteria,2U9MB@28211|Alphaproteobacteria,43P6D@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_3009905_10	509190.Cseg_1524	1.615e-37	146.0	COG0640@1|root,COG0640@2|Bacteria,1N0HB@1224|Proteobacteria,2UDT7@28211|Alphaproteobacteria,2KHBW@204458|Caulobacterales	204458|Caulobacterales	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_5
DYD3_k127_3009905_7	1280954.HPO_12293	1.1e-55	200.0	COG3832@1|root,COG3832@2|Bacteria,1RJC5@1224|Proteobacteria,2UB86@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase 1 family protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_3009905_2	648757.Rvan_3042	1.349e-245	789.0	COG2719@1|root,COG2719@2|Bacteria,1MW6U@1224|Proteobacteria,2TRJG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SpoVR family	MA20_00990	GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716	-	ko:K06415	-	-	-	-	ko00000	-	-	-	SpoVR
DYD3_k127_3009905_3	648757.Rvan_3043	1.307e-179	571.0	COG2718@1|root,COG2718@2|Bacteria,1MWQM@1224|Proteobacteria,2TTWI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the UPF0229 family	MA20_00985	-	-	ko:K09786	-	-	-	-	ko00000	-	-	-	DUF444
DYD3_k127_3009905_1	582402.Hbal_1359	0.0	1169.0	COG2766@1|root,COG2766@2|Bacteria,1MVW7@1224|Proteobacteria,2TTW4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Serine protein kinase	prkA	GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006995,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0042594,GO:0043170,GO:0043412,GO:0043562,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0140096,GO:1901564	-	ko:K07180	-	-	-	-	ko00000	-	-	-	AAA_PrkA,PrkA
DYD3_k127_3009905_9	2002.JOEQ01000002_gene4375	1.799e-43	165.0	COG3485@1|root,COG3979@1|root,COG3485@2|Bacteria,COG3979@2|Bacteria,2GNNC@201174|Actinobacteria,4EIS5@85012|Streptosporangiales	201174|Actinobacteria	Q	Dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Dioxygenase_C
DYD3_k127_3032783_12	1410620.SHLA_70c000050	1.024e-19	92.0	COG4177@1|root,COG4177@2|Bacteria,1NY9G@1224|Proteobacteria,2TTSN@28211|Alphaproteobacteria,4BC4I@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
DYD3_k127_3032783_5	1149133.ppKF707_1759	5.008e-113	382.0	COG0559@1|root,COG0559@2|Bacteria,1P3FU@1224|Proteobacteria,1RXET@1236|Gammaproteobacteria,1YIK9@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	U	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
DYD3_k127_3032783_8	1041142.ATTP01000002_gene3774	6.705e-79	282.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TSMP@28211|Alphaproteobacteria,4BBBS@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
DYD3_k127_3032783_7	1149133.ppKF707_1757	2.785e-91	306.0	COG0411@1|root,COG0411@2|Bacteria,1MUFT@1224|Proteobacteria,1TBHG@1236|Gammaproteobacteria,1YHM3@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
DYD3_k127_3032783_3	935548.KI912159_gene3566	3.543e-151	488.0	COG0683@1|root,COG0683@2|Bacteria,1N0MT@1224|Proteobacteria,2TUMI@28211|Alphaproteobacteria,43MSE@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6,TAT_signal
DYD3_k127_3032783_4	1123060.JONP01000011_gene3107	8.931e-135	437.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2TSK0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	maleylacetate reductase	macA	-	1.3.1.32	ko:K00217	ko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220	-	R02988,R02989,R05355,R06848,R07781,R09137,R09138,R09223,R09224	RC00107,RC01335,RC01689,RC02442	ko00000,ko00001,ko01000	-	-	-	Fe-ADH
DYD3_k127_3032783_0	555793.WSK_3093	2.737e-245	765.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,2JZVD@204457|Sphingomonadales	204457|Sphingomonadales	C	belongs to the aldehyde dehydrogenase family	-	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_3032783_1	1549858.MC45_16645	4.483e-160	509.0	28IZD@1|root,2Z8WU@2|Bacteria,1NEGQ@1224|Proteobacteria,2UZGH@28211|Alphaproteobacteria,2K8TY@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3032783_10	1549858.MC45_16640	1.336e-59	216.0	28PSM@1|root,2ZCE4@2|Bacteria,1RBR6@1224|Proteobacteria,2V0GH@28211|Alphaproteobacteria,2K9CV@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3032783_9	1040989.AWZU01000117_gene3345	9.115e-60	219.0	COG2267@1|root,COG2267@2|Bacteria,1PE1Z@1224|Proteobacteria,2U8Z2@28211|Alphaproteobacteria,3K63X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_3032783_2	1248916.ANFY01000007_gene2486	3.995e-153	494.0	COG0620@1|root,COG0620@2|Bacteria,1MUI9@1224|Proteobacteria,2TTWK@28211|Alphaproteobacteria,2K0DU@204457|Sphingomonadales	204457|Sphingomonadales	E	Methionine synthase	-	-	-	-	-	-	-	-	-	-	-	-	Meth_synt_2
DYD3_k127_3032783_13	551789.ATVJ01000003_gene131	3.174e-18	85.0	2AJDC@1|root,319YW@2|Bacteria,1Q4GY@1224|Proteobacteria,2V72P@28211|Alphaproteobacteria,43YYC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3032783_14	744872.Spica_0618	8.08e-13	74.0	COG1917@1|root,COG1917@2|Bacteria,2JAJW@203691|Spirochaetes	203691|Spirochaetes	S	Cupin 2, conserved barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3032783_11	627192.SLG_26400	7.524e-22	106.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3032783_6	1346791.M529_03200	5.364e-113	374.0	COG0346@1|root,COG0346@2|Bacteria,1P6TT@1224|Proteobacteria,2TQXR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	ko:K15975	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_3051885_0	394221.Mmar10_1827	2.721e-300	929.0	COG0143@1|root,COG0143@2|Bacteria,1MUBY@1224|Proteobacteria,2TQKA@28211|Alphaproteobacteria,43WD5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	metG	-	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1g
DYD3_k127_3051885_16	1161401.ASJA01000001_gene565	1.093e-31	128.0	COG0251@1|root,COG0251@2|Bacteria,1PHJK@1224|Proteobacteria,2V89Y@28211|Alphaproteobacteria,4405J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	translation initiation inhibitor, yjgF family	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_3051885_2	394221.Mmar10_1819	1.471e-122	404.0	COG5505@1|root,COG5505@2|Bacteria,1RAF4@1224|Proteobacteria,2U5HM@28211|Alphaproteobacteria,43ZAW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF819)	-	-	-	-	-	-	-	-	-	-	-	-	DUF819
DYD3_k127_3051885_5	1248916.ANFY01000003_gene626	2.177e-93	342.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,2K1HY@204457|Sphingomonadales	204457|Sphingomonadales	G	Aldolase	-	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
DYD3_k127_3051885_15	485918.Cpin_2674	1.538e-42	168.0	COG0491@1|root,COG0491@2|Bacteria,4NHG1@976|Bacteroidetes,1IV1T@117747|Sphingobacteriia	976|Bacteroidetes	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_3051885_1	234267.Acid_5827	2.569e-197	642.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5,zf-C4_Topoisom
DYD3_k127_3051885_4	627192.SLG_31400	7.472e-101	344.0	COG2960@1|root,COG2960@2|Bacteria,1RGT9@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_3051885_12	627192.SLG_31390	4.595e-65	252.0	COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,2UA2F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	ankyrin repeat	-	-	-	ko:K15503	-	-	-	-	ko00000,ko01009,ko03400	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5
DYD3_k127_3051885_13	627192.SLG_38070	6.587e-57	214.0	COG0300@1|root,COG0300@2|Bacteria,1RG9T@1224|Proteobacteria,2TYHJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	KR domain	-	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
DYD3_k127_3051885_17	371731.Rsw2DRAFT_0945	9.195e-31	132.0	COG3791@1|root,COG3791@2|Bacteria,1RE8S@1224|Proteobacteria,2U73V@28211|Alphaproteobacteria,1FD1J@1060|Rhodobacter	28211|Alphaproteobacteria	S	PFAM glutathione-dependent formaldehyde-activating	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_3051885_18	420324.KI911965_gene1262	1.019e-21	107.0	COG3791@1|root,COG3791@2|Bacteria,1N1H2@1224|Proteobacteria,2VGCD@28211|Alphaproteobacteria,1JZEW@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_3051885_11	394221.Mmar10_1817	2.58e-65	244.0	COG0566@1|root,COG0566@2|Bacteria,1MWCM@1224|Proteobacteria,2TUG7@28211|Alphaproteobacteria,43XN6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family	rlmB	-	2.1.1.185	ko:K03218	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	SpoU_methylase,SpoU_sub_bind
DYD3_k127_3051885_7	1247963.JPHU01000002_gene2763	6.507e-78	287.0	COG1216@1|root,COG1216@2|Bacteria,1P0NF@1224|Proteobacteria,2UVVP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Glycosyl transferase, family 2	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3051885_19	1123059.KB823012_gene2218	1.618e-16	90.0	COG3595@1|root,COG3595@2|Bacteria,1NKX9@1224|Proteobacteria,2UMDB@28211|Alphaproteobacteria,440TM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3051885_8	760117.JN27_23170	9.288e-74	258.0	arCOG10603@1|root,32SV6@2|Bacteria,1MYDK@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3051885_21	661478.OP10G_0131	7.004e-07	55.0	COG1961@1|root,COG1961@2|Bacteria	2|Bacteria	L	recombinase activity	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_3051885_20	1282360.ABAC460_11450	9.018e-13	70.0	COG0690@1|root,COG0690@2|Bacteria,1N75P@1224|Proteobacteria,2UF51@28211|Alphaproteobacteria,2KH7G@204458|Caulobacterales	204458|Caulobacterales	U	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation	secE	-	-	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecE
DYD3_k127_3051885_6	1161401.ASJA01000030_gene3009	3.078e-81	273.0	COG0250@1|root,COG0250@2|Bacteria,1MU14@1224|Proteobacteria,2TRID@28211|Alphaproteobacteria,43XE4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Participates in transcription elongation, termination and antitermination	nusG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141	-	ko:K02601	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	KOW,NusG
DYD3_k127_3051885_10	1333998.M2A_3268	6.225e-66	227.0	COG0080@1|root,COG0080@2|Bacteria,1RA2M@1224|Proteobacteria,2U760@28211|Alphaproteobacteria,4BQ4R@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	rplK	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02867	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L11,Ribosomal_L11_N
DYD3_k127_3051885_3	1161401.ASJA01000030_gene3011	2.303e-105	347.0	COG0081@1|root,COG0081@2|Bacteria,1MUE6@1224|Proteobacteria,2TRXP@28211|Alphaproteobacteria,43X7A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	rplA	GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02863	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L1
DYD3_k127_3051885_9	1479238.JQMZ01000001_gene1081	2.106e-70	246.0	COG0244@1|root,COG0244@2|Bacteria,1RAN5@1224|Proteobacteria,2U592@28211|Alphaproteobacteria,43XPR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	rplJ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02864	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L10
DYD3_k127_3051885_14	1298858.AUEL01000033_gene3754	7.794e-50	180.0	COG0222@1|root,COG0222@2|Bacteria,1RGU4@1224|Proteobacteria,2U9FX@28211|Alphaproteobacteria,43K11@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	rplL	-	-	ko:K02935	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L12,Ribosomal_L12_N
DYD3_k127_3060337_3	1187851.A33M_4023	4.525e-82	281.0	COG0529@1|root,COG2895@1|root,COG0529@2|Bacteria,COG2895@2|Bacteria,1MUD9@1224|Proteobacteria,2TQNJ@28211|Alphaproteobacteria,3FDB9@34008|Rhodovulum	28211|Alphaproteobacteria	P	Catalyzes the synthesis of activated sulfate	cysC	-	2.7.1.25,2.7.7.4	ko:K00955	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130	M00176	R00509,R00529,R04928,R04929	RC00002,RC00078,RC02809,RC02889	ko00000,ko00001,ko00002,ko01000	-	-	-	APS_kinase,GTP_EFTU
DYD3_k127_3060337_1	1123503.KB908057_gene2579	6.636e-158	511.0	COG0175@1|root,COG0175@2|Bacteria,1MUCZ@1224|Proteobacteria,2TT2D@28211|Alphaproteobacteria,2KG42@204458|Caulobacterales	204458|Caulobacterales	H	Sulfate adenylyltransferase	cysD	-	2.7.7.4	ko:K00957	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130	M00176,M00596	R00529,R04929	RC02809,RC02889	ko00000,ko00001,ko00002,ko01000	-	-	-	PAPS_reduct
DYD3_k127_3060337_4	1282361.ABAC402_16815	2.15e-38	156.0	COG1218@1|root,COG1218@2|Bacteria,1N0GY@1224|Proteobacteria,2TT7B@28211|Alphaproteobacteria,2KGGX@204458|Caulobacterales	204458|Caulobacterales	P	nucleotidase	cysQ	-	3.1.3.7	ko:K01082	ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130	-	R00188,R00508	RC00078	ko00000,ko00001,ko01000,ko03016	-	-	-	Inositol_P
DYD3_k127_3060337_2	394221.Mmar10_1392	1.607e-105	347.0	COG1043@1|root,COG1043@2|Bacteria,1MUHQ@1224|Proteobacteria,2TRK9@28211|Alphaproteobacteria,43X2Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxA	-	2.3.1.129	ko:K00677	ko00540,ko01100,ko01503,map00540,map01100,map01503	M00060	R04567	RC00039,RC00055	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Acetyltransf_11,Hexapep
DYD3_k127_3060337_0	1382303.JPOM01000001_gene1074	2.864e-228	724.0	COG0449@1|root,COG0449@2|Bacteria,1MW4K@1224|Proteobacteria,2TQPM@28211|Alphaproteobacteria,2KG1W@204458|Caulobacterales	204458|Caulobacterales	M	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	glmS	-	2.6.1.16	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	-	R00768	RC00010,RC00163,RC02752	ko00000,ko00001,ko01000,ko01002	-	-	-	GATase_6,SIS
DYD3_k127_3060337_6	1121033.AUCF01000001_gene2409	2.263e-32	141.0	COG0374@1|root,COG0375@1|root,COG0374@2|Bacteria,COG0375@2|Bacteria,1R6ND@1224|Proteobacteria,2TUQP@28211|Alphaproteobacteria,2JTST@204441|Rhodospirillales	204441|Rhodospirillales	C	Nickel-dependent hydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	NiFeSe_Hases
DYD3_k127_3060337_5	1117943.SFHH103_01638	5.05e-38	156.0	29AU1@1|root,2ZXTE@2|Bacteria,1RFMX@1224|Proteobacteria,2UC8M@28211|Alphaproteobacteria,4BFXX@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SIR2_2
DYD3_k127_3080750_2	1280954.HPO_07874	5.607e-16	89.0	COG0115@1|root,COG0115@2|Bacteria,1MZAK@1224|Proteobacteria,2U9QU@28211|Alphaproteobacteria,43YB6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EH	COG0115 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase	-	-	2.6.1.42,4.1.3.38	ko:K00826,ko:K02619	ko00270,ko00280,ko00290,ko00770,ko00790,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map00790,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R05553,R10991	RC00006,RC00036,RC01843,RC02148	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_4
DYD3_k127_3080750_1	228405.HNE_2368	1.038e-70	246.0	COG0512@1|root,COG0512@2|Bacteria,1MV5Y@1224|Proteobacteria,2TU3N@28211|Alphaproteobacteria,43XHM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EH	COG0512 Anthranilate para-aminobenzoate synthases component II	pabA	-	2.4.2.18,2.6.1.85,4.1.3.27	ko:K01658,ko:K01664,ko:K13497	ko00400,ko00405,ko00790,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map00790,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986,R01073,R01716	RC00010,RC00440,RC01418,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase
DYD3_k127_3080750_0	460265.Mnod_0053	1.983e-110	376.0	COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,2TRWB@28211|Alphaproteobacteria,1JREC@119045|Methylobacteriaceae	28211|Alphaproteobacteria	EH	PFAM Anthranilate synthase component I	pabB	-	2.6.1.85,4.1.3.27	ko:K01657,ko:K01665	ko00400,ko00405,ko00790,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map00790,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986,R01716	RC00010,RC01418,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	Anth_synt_I_N,Chorismate_bind
DYD3_k127_3084953_12	394221.Mmar10_0924	3.949e-34	139.0	2CK39@1|root,32SBG@2|Bacteria,1MZ6F@1224|Proteobacteria,2UBT5@28211|Alphaproteobacteria,43YGI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Phage_connect_1
DYD3_k127_3084953_18	1122132.AQYH01000010_gene3839	9.716e-16	85.0	COG5614@1|root,COG5614@2|Bacteria,1NAIW@1224|Proteobacteria,2UFNS@28211|Alphaproteobacteria,4BG9S@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Phage head-tail joining protein	-	-	-	-	-	-	-	-	-	-	-	-	Phage_H_T_join
DYD3_k127_3084953_15	316055.RPE_1916	6.187e-23	103.0	2E3NG@1|root,32YKK@2|Bacteria,1NBBS@1224|Proteobacteria,2UGKW@28211|Alphaproteobacteria,3JZAK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3168)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3168
DYD3_k127_3084953_11	1161401.ASJA01000015_gene935	7.256e-55	195.0	COG5437@1|root,COG5437@2|Bacteria,1RH1Z@1224|Proteobacteria,2U9I4@28211|Alphaproteobacteria,43Y4J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Phage tail tube protein	-	-	-	-	-	-	-	-	-	-	-	-	Phage_tail_2
DYD3_k127_3084953_17	391600.ABRU01000020_gene1314	2.345e-17	85.0	2BR5R@1|root,32K3T@2|Bacteria,1Q2MD@1224|Proteobacteria,2V67F@28211|Alphaproteobacteria,2KJPR@204458|Caulobacterales	204458|Caulobacterales	S	Phage tail tube protein, GTA-gp10	-	-	-	-	-	-	-	-	-	-	-	-	Phage_TAC_11
DYD3_k127_3084953_14	394221.Mmar10_0929	3.523e-25	111.0	COG3941@1|root,COG3941@2|Bacteria	2|Bacteria	O	tape measure	-	-	-	-	-	-	-	-	-	-	-	-	Tape_meas_lam_C
DYD3_k127_3084953_9	1161401.ASJA01000015_gene939	3.66e-80	274.0	COG5448@1|root,COG5448@2|Bacteria,1MXM8@1224|Proteobacteria,2TTJ3@28211|Alphaproteobacteria,43Y09@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Conserved hypothetical protein 2217 (DUF2460)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2460
DYD3_k127_3084953_8	1161401.ASJA01000015_gene942	1.16e-84	291.0	COG5449@1|root,COG5449@2|Bacteria,1MXK2@1224|Proteobacteria,2TTWS@28211|Alphaproteobacteria,43XTP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Phage conserved hypothetical protein BR0599	-	-	-	-	-	-	-	-	-	-	-	-	DUF2163,Phage_BR0599
DYD3_k127_3084953_10	1161401.ASJA01000015_gene943	1.215e-60	214.0	COG0791@1|root,COG0791@2|Bacteria,1RK6X@1224|Proteobacteria,2U93K@28211|Alphaproteobacteria,43XUQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Phage cell wall peptidase, NlpC P60 family	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60
DYD3_k127_3084953_0	1161401.ASJA01000015_gene944	0.0	1259.0	COG3391@1|root,COG3391@2|Bacteria,1MXN7@1224|Proteobacteria,2TR83@28211|Alphaproteobacteria,43WNC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Putative phage tail protein	-	-	-	-	-	-	-	-	-	-	-	-	GTA_TIM,Phage-tail_3
DYD3_k127_3084953_7	1161401.ASJA01000015_gene945	7.709e-92	311.0	COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,2TR01@28211|Alphaproteobacteria,43X3K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG2214 DnaJ-class molecular chaperone	cbpA	-	-	-	-	-	-	-	-	-	-	-	DnaJ,DnaJ_C
DYD3_k127_3084953_6	1161401.ASJA01000015_gene947	8.32e-114	371.0	COG0745@1|root,COG0745@2|Bacteria,1N0YI@1224|Proteobacteria,2TSV8@28211|Alphaproteobacteria,43WVK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KT	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	feuP	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_3084953_4	1161401.ASJA01000015_gene948	1.577e-127	432.0	COG0642@1|root,COG0642@2|Bacteria,1MX6R@1224|Proteobacteria,2TS9N@28211|Alphaproteobacteria,43WHV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Signal transduction histidine kinase	feuQ	-	-	-	-	-	-	-	-	-	-	-	2CSK_N,HATPase_c
DYD3_k127_3084953_16	1479238.JQMZ01000001_gene1179	3.248e-22	113.0	2DZIK@1|root,32VBM@2|Bacteria,1Q6D6@1224|Proteobacteria,2V6VC@28211|Alphaproteobacteria,43ZY5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3084953_13	1229204.AMYY01000003_gene962	8.804e-28	118.0	COG2332@1|root,COG2332@2|Bacteria,1RHN5@1224|Proteobacteria,2U99J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH	ccmE	GO:0003674,GO:0003824,GO:0008150,GO:0009987,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043933,GO:0044085,GO:0065003,GO:0071840	-	ko:K02197	-	-	-	-	ko00000	-	-	-	CcmE
DYD3_k127_3084953_2	1161401.ASJA01000015_gene955	4.832e-154	503.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TQPZ@28211|Alphaproteobacteria,43X8X@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Belongs to the peptidase S1C family	dop	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ_2,Trypsin_2
DYD3_k127_3084953_5	394221.Mmar10_0943	3.253e-115	375.0	COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,2TRTZ@28211|Alphaproteobacteria,43WBF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	ragA	GO:0000160,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0006355,GO:0007154,GO:0007165,GO:0008150,GO:0009889,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031326,GO:0035556,GO:0042221,GO:0042802,GO:0046688,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_3084953_3	1161401.ASJA01000015_gene957	6.596e-144	470.0	COG0642@1|root,COG2205@2|Bacteria,1MW8M@1224|Proteobacteria,2TUSJ@28211|Alphaproteobacteria,44156@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	ragB	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
DYD3_k127_3084953_1	314254.OA2633_14965	1.966e-212	688.0	COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,2TRY7@28211|Alphaproteobacteria,43WTT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell	glnE	GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090	2.7.7.42,2.7.7.89	ko:K00982	-	-	-	-	ko00000,ko01000	-	-	-	GlnD_UR_UTase,GlnE
DYD3_k127_3087282_9	545276.KB898725_gene883	1.897e-05	49.0	COG3263@1|root,COG3263@2|Bacteria,1MVKV@1224|Proteobacteria,1RMCA@1236|Gammaproteobacteria,1WXRK@135613|Chromatiales	135613|Chromatiales	P	Sodium hydrogen exchanger	-	-	-	ko:K11105	-	-	-	-	ko00000,ko02000	2.A.36.6	-	-	CorC_HlyC,Na_H_Exchanger,TrkA_C
DYD3_k127_3087282_8	627192.SLG_26310	1.044e-20	100.0	COG3631@1|root,COG3631@2|Bacteria,1NI1R@1224|Proteobacteria	1224|Proteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_3087282_1	886293.Sinac_1153	1.281e-170	564.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	CBM60,PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5,zf-C4_Topoisom
DYD3_k127_3087282_3	627192.SLG_31400	1.358e-91	317.0	COG2960@1|root,COG2960@2|Bacteria,1RGT9@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_3087282_7	7668.SPU_020320-tr	4.685e-28	132.0	COG0666@1|root,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta	33154|Opisthokonta	M	protein localization to T-tubule	-	-	-	ko:K10380,ko:K15502	ko04624,ko05205,map04624,map05205	-	-	-	ko00000,ko00001,ko01009,ko03400,ko04812	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5,ZU5
DYD3_k127_3087282_6	1079460.ATTQ01000006_gene3246	1.122e-31	137.0	COG0491@1|root,COG0491@2|Bacteria,1PKW8@1224|Proteobacteria,2TUW8@28211|Alphaproteobacteria,4B70X@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_3087282_0	627192.SLG_06540	8.81e-308	958.0	COG3848@1|root,COG3848@2|Bacteria,1MV5C@1224|Proteobacteria,2U2Y8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	PEP-utilising enzyme, mobile domain	-	-	2.7.9.2	ko:K01007	ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200	M00173,M00374	R00199	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers
DYD3_k127_3087282_2	627192.SLG_06530	2.545e-148	476.0	COG0574@1|root,COG0574@2|Bacteria,1MU0R@1224|Proteobacteria,2TR38@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate	-	-	2.7.9.2	ko:K01007	ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200	M00173,M00374	R00199	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PPDK_N
DYD3_k127_3087282_5	627192.SLG_06520	2.642e-35	151.0	COG0511@1|root,COG0511@2|Bacteria,1N4VN@1224|Proteobacteria,2VGRT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA	-	-	-	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742	RC00040,RC00367	ko00000,ko00001,ko00002	-	-	-	Biotin_lipoyl
DYD3_k127_3087282_4	627192.SLG_06510	1.167e-73	254.0	COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,2TVJE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism	-	-	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
DYD3_k127_3147641_5	471857.Svir_31080	2.609e-05	49.0	COG1994@1|root,COG1994@2|Bacteria,2GM8E@201174|Actinobacteria,4E07G@85010|Pseudonocardiales	201174|Actinobacteria	S	PFAM Peptidase family M50	rip2	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M50
DYD3_k127_3147641_3	1192034.CAP_4690	2.464e-46	173.0	COG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,43095@68525|delta/epsilon subdivisions,2WVAH@28221|Deltaproteobacteria,2YVKH@29|Myxococcales	28221|Deltaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_3147641_0	1479238.JQMZ01000001_gene1624	0.0	1527.0	COG0178@1|root,COG0178@2|Bacteria,1MW0W@1224|Proteobacteria,2TQK9@28211|Alphaproteobacteria,43WY6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate	uvrA	-	-	ko:K03701	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	ABC_tran
DYD3_k127_3147641_2	1280954.HPO_05397	7.913e-58	214.0	COG0457@1|root,COG0457@2|Bacteria,1N9AG@1224|Proteobacteria,2UCGH@28211|Alphaproteobacteria,43XNA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3137)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3137
DYD3_k127_3147641_4	1280946.HY29_00840	1.17e-16	94.0	COG0457@1|root,COG0457@2|Bacteria,1N9AG@1224|Proteobacteria,2UCGH@28211|Alphaproteobacteria,43XNA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3137)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3137
DYD3_k127_3147641_1	1207063.P24_04584	2.266e-170	544.0	COG0525@1|root,COG0525@2|Bacteria,1MV7B@1224|Proteobacteria,2TS9E@28211|Alphaproteobacteria,2JQ5V@204441|Rhodospirillales	204441|Rhodospirillales	J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner	valS	-	6.1.1.9	ko:K01873	ko00970,map00970	M00359,M00360	R03665	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1
DYD3_k127_3179267_9	1280952.HJA_15991	4.467e-15	85.0	2D25X@1|root,32TC5@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3179267_5	234267.Acid_3334	1.216e-65	237.0	COG3391@1|root,COG3391@2|Bacteria,3Y3R3@57723|Acidobacteria	57723|Acidobacteria	S	TIGRFAM 40-residue YVTN family beta-propeller repeat	-	-	-	-	-	-	-	-	-	-	-	-	Lactonase
DYD3_k127_3179267_10	391625.PPSIR1_31553	0.0002915	49.0	2ESCQ@1|root,33JXH@2|Bacteria,1P9JE@1224|Proteobacteria,4325U@68525|delta/epsilon subdivisions,2WXM6@28221|Deltaproteobacteria	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3179267_7	1161401.ASJA01000018_gene1226	1.124e-25	107.0	COG0267@1|root,COG0267@2|Bacteria,1N6QV@1224|Proteobacteria,2UF4D@28211|Alphaproteobacteria,43YEG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL33 family	rpmG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02913	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L33
DYD3_k127_3179267_2	1161401.ASJA01000018_gene1225	3.013e-158	511.0	COG0745@1|root,COG2199@1|root,COG0745@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2TQQM@28211|Alphaproteobacteria,43WMM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain	pleD	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464	2.7.7.65	ko:K02488	ko02020,ko04112,map02020,map04112	M00511	R08057	-	ko00000,ko00001,ko00002,ko01000,ko02022	-	-	-	GGDEF,Response_reg
DYD3_k127_3179267_6	450851.PHZ_c1309	8.632e-51	183.0	COG0745@1|root,COG0745@2|Bacteria,1RD7E@1224|Proteobacteria,2U745@28211|Alphaproteobacteria,2KGFJ@204458|Caulobacterales	204458|Caulobacterales	T	PFAM response regulator receiver	-	-	-	ko:K11443	ko02020,ko04112,map02020,map04112	M00511	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg
DYD3_k127_3179267_4	1333998.M2A_2855	6.022e-106	353.0	COG1940@1|root,COG1940@2|Bacteria,1MU94@1224|Proteobacteria,2TRRU@28211|Alphaproteobacteria,4BPKI@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	GK	ROK family	-	-	2.7.1.2,2.7.1.4	ko:K00845,ko:K00847	ko00010,ko00051,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00051,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R00760,R00867,R01600,R01786,R03920	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	ROK
DYD3_k127_3179267_3	1161401.ASJA01000018_gene1222	6.263e-157	507.0	COG0389@1|root,COG0389@2|Bacteria,1MUUH@1224|Proteobacteria,2TSJN@28211|Alphaproteobacteria,43WCM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	dinB	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02346	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	IMS,IMS_C
DYD3_k127_3179267_8	627192.SLG_25140	1.945e-22	109.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3179267_0	394221.Mmar10_2450	1.947e-281	892.0	COG0529@1|root,COG2895@1|root,COG0529@2|Bacteria,COG2895@2|Bacteria,1MUD9@1224|Proteobacteria,2TQNJ@28211|Alphaproteobacteria,43WEP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily	cysC	-	2.7.1.25,2.7.7.4	ko:K00955,ko:K00956	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130	M00176,M00596	R00509,R00529,R04928,R04929	RC00002,RC00078,RC02809,RC02889	ko00000,ko00001,ko00002,ko01000	-	-	-	APS_kinase,GTP_EFTU,GTP_EFTU_D2
DYD3_k127_3179267_1	1282876.BAOK01000002_gene523	3.971e-162	514.0	COG0175@1|root,COG0175@2|Bacteria,1MUCZ@1224|Proteobacteria,2TT2D@28211|Alphaproteobacteria,4BPHR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	EH	Phosphoadenosine phosphosulfate reductase family	cysD	-	2.7.7.4	ko:K00957	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130	M00176,M00596	R00529,R04929	RC02809,RC02889	ko00000,ko00001,ko00002,ko01000	-	-	-	PAPS_reduct
DYD3_k127_319261_0	394221.Mmar10_2608	5.518e-128	432.0	COG0577@1|root,COG0577@2|Bacteria,1PBKH@1224|Proteobacteria,2TW3U@28211|Alphaproteobacteria,43X71@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG0577 ABC-type antimicrobial peptide transport system, permease component	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_319261_4	1122613.ATUP01000001_gene156	2.635e-91	307.0	COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,2TS3W@28211|Alphaproteobacteria,43Z2W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG1136 ABC-type antimicrobial peptide transport system, ATPase component	macB	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_319261_1	394221.Mmar10_2610	6.314e-122	410.0	COG0845@1|root,COG0845@2|Bacteria,1MU8D@1224|Proteobacteria,2U139@28211|Alphaproteobacteria,43X55@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K02005,ko:K13888	-	M00709	-	-	ko00000,ko00002,ko02000	8.A.1	-	-	Biotin_lipoyl_2,HlyD_D23
DYD3_k127_319261_3	1280954.HPO_12633	1.679e-100	333.0	COG0177@1|root,COG0177@2|Bacteria,1MUYQ@1224|Proteobacteria,2TRI2@28211|Alphaproteobacteria,43W70@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate	nth	-	4.2.99.18	ko:K10773	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	EndIII_4Fe-2S,HhH-GPD
DYD3_k127_319261_6	1161401.ASJA01000002_gene2694	8.316e-39	151.0	COG5488@1|root,COG5488@2|Bacteria,1NPQQ@1224|Proteobacteria,2UB81@28211|Alphaproteobacteria,43YQJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Integral membrane protein (DUF2244)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2244
DYD3_k127_319261_7	234267.Acid_6200	1.378e-27	114.0	COG2442@1|root,COG2442@2|Bacteria,3Y8WX@57723|Acidobacteria	57723|Acidobacteria	S	Protein of unknown function (DUF433)	-	-	-	-	-	-	-	-	-	-	-	-	DUF433
DYD3_k127_319261_8	234267.Acid_6199	6.048e-22	103.0	COG4634@1|root,COG4634@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Mut7-C
DYD3_k127_319261_2	394221.Mmar10_2993	4.075e-116	381.0	COG0350@1|root,COG2207@1|root,COG0350@2|Bacteria,COG2207@2|Bacteria,1N2YQ@1224|Proteobacteria,2TQRX@28211|Alphaproteobacteria,43WBZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	COG2207 AraC-type DNA-binding domain-containing proteins	ada	-	2.1.1.63	ko:K10778	-	-	-	-	ko00000,ko01000,ko03000,ko03400	-	-	-	DNA_binding_1,HTH_18
DYD3_k127_319261_9	1161401.ASJA01000002_gene2692	7.636e-18	90.0	2F5U1@1|root,33YCY@2|Bacteria,1NWBG@1224|Proteobacteria,2USQT@28211|Alphaproteobacteria,43YT4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_319261_5	394221.Mmar10_2995	5.018e-76	257.0	COG0346@1|root,COG0346@2|Bacteria,1RCYX@1224|Proteobacteria,2U7A8@28211|Alphaproteobacteria,43XPG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Glyoxalase bleomycin resistance protein dioxygenase	gloA	GO:0003674,GO:0003824,GO:0004462,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016846,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564	4.4.1.5	ko:K01759	ko00620,map00620	-	R02530	RC00004,RC00740	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
DYD3_k127_3196886_22	1123072.AUDH01000001_gene3144	2.656e-17	82.0	COG0825@1|root,COG0825@2|Bacteria,1MURN@1224|Proteobacteria,2TR6V@28211|Alphaproteobacteria,2JQXN@204441|Rhodospirillales	204441|Rhodospirillales	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	accA	-	2.1.3.15,6.4.1.2	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	ACCA
DYD3_k127_3196886_15	1411123.JQNH01000001_gene3347	3.454e-62	220.0	COG0861@1|root,COG0861@2|Bacteria,1PN8B@1224|Proteobacteria,2TUV5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	membrane protein TerC	terC	-	-	-	-	-	-	-	-	-	-	-	TerC
DYD3_k127_3196886_1	1110502.TMO_0761	4.492e-176	556.0	COG1077@1|root,COG1077@2|Bacteria,1MUMW@1224|Proteobacteria,2TTQ2@28211|Alphaproteobacteria,2JPHS@204441|Rhodospirillales	204441|Rhodospirillales	D	Rod shape-determining protein MreB	mreB	-	-	ko:K03569	-	-	-	-	ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1	-	-	MreB_Mbl
DYD3_k127_3196886_16	402881.Plav_2480	1.202e-57	211.0	COG1792@1|root,COG1792@2|Bacteria,1N8ZS@1224|Proteobacteria,2U1FY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	shape-determining protein MreC	mreC	-	-	ko:K03570	-	-	-	-	ko00000,ko03036	9.B.157.1	-	-	MreC
DYD3_k127_3196886_25	1333998.M2A_1319	4.995e-13	77.0	2DDTT@1|root,32U20@2|Bacteria,1N2J3@1224|Proteobacteria,2UCVI@28211|Alphaproteobacteria,4BR2A@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	shape-determining protein	mreD	-	-	ko:K03571	-	-	-	-	ko00000,ko03036	9.B.157.1	-	-	MreD
DYD3_k127_3196886_2	394221.Mmar10_2014	6.644e-171	566.0	COG0768@1|root,COG0768@2|Bacteria,1MV8C@1224|Proteobacteria,2TRXN@28211|Alphaproteobacteria,43WTK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0768 Cell division protein FtsI penicillin-binding protein 2	mrdA	-	3.4.16.4	ko:K05515	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011	-	-	-	PBP_dimer,Transpeptidase
DYD3_k127_3196886_9	1161401.ASJA01000001_gene449	8.544e-108	370.0	COG0772@1|root,COG0772@2|Bacteria,1MUK3@1224|Proteobacteria,2TSM0@28211|Alphaproteobacteria,43WZV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Belongs to the SEDS family	mrdB	-	-	ko:K05837	-	-	-	-	ko00000,ko03036	-	-	-	FTSW_RODA_SPOVE
DYD3_k127_3196886_6	394221.Mmar10_2011	3.828e-128	417.0	COG0596@1|root,COG0596@2|Bacteria,1MWW8@1224|Proteobacteria,2TS53@28211|Alphaproteobacteria,43WMY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the peptidase S33 family	pip	-	3.4.11.5	ko:K01259	ko00330,map00330	-	R00135	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
DYD3_k127_3196886_26	880071.Fleli_0323	3.599e-06	53.0	COG3255@1|root,COG3255@2|Bacteria,4NV5S@976|Bacteroidetes,47S30@768503|Cytophagia	976|Bacteroidetes	I	SCP-2 sterol transfer family	-	-	-	-	-	-	-	-	-	-	-	-	SCP2
DYD3_k127_3196886_8	394221.Mmar10_2006	8.087e-108	368.0	COG0438@1|root,COG0438@2|Bacteria,1P81Z@1224|Proteobacteria,2UHSK@28211|Alphaproteobacteria,43X74@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_3196886_23	509190.Cseg_1475	3.028e-15	81.0	COG2363@1|root,COG2363@2|Bacteria,1MZX3@1224|Proteobacteria,2UGS5@28211|Alphaproteobacteria,2KHG6@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF423)	-	-	-	-	-	-	-	-	-	-	-	-	DUF423
DYD3_k127_3196886_18	1123503.KB908056_gene1344	5.556e-52	199.0	COG0477@1|root,COG2814@2|Bacteria,1MVZI@1224|Proteobacteria,2U5H1@28211|Alphaproteobacteria,2KFFC@204458|Caulobacterales	204458|Caulobacterales	EGP	Major facilitator superfamily	-	-	-	ko:K05820	-	-	-	-	ko00000,ko02000	2.A.1.27	-	-	MFS_1_like
DYD3_k127_3196886_5	314254.OA2633_05126	7.66e-133	434.0	COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2TSGS@28211|Alphaproteobacteria,43W89@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	COG0767 ABC-type transport system involved in resistance to organic solvents, permease component	MA20_08115	-	-	ko:K02066	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaE,STAS,STAS_2
DYD3_k127_3196886_10	314254.OA2633_05121	1.987e-106	369.0	COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2TR2I@28211|Alphaproteobacteria,43WM9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	ABC transporter, ATP-binding protein	yrbF	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
DYD3_k127_3196886_13	394221.Mmar10_2002	6.707e-76	265.0	COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,2U1JN@28211|Alphaproteobacteria,43XQT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component	MA20_08125	-	-	ko:K02067	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaD
DYD3_k127_3196886_21	1161401.ASJA01000001_gene462	1.692e-33	138.0	COG3218@1|root,COG3218@2|Bacteria	2|Bacteria	Q	ABC-type transport auxiliary lipoprotein component	MA20_38065	-	-	ko:K02067,ko:K09857,ko:K18480	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27,3.A.1.27.1	-	-	ABC_trans_aux,MlaD
DYD3_k127_3196886_19	1161401.ASJA01000001_gene463	1.093e-41	175.0	COG1196@1|root,COG1196@2|Bacteria,1PVHY@1224|Proteobacteria,2V6WU@28211|Alphaproteobacteria,43YFV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	nuclear chromosome segregation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3196886_11	1161401.ASJA01000001_gene465	3.818e-101	343.0	COG2311@1|root,COG2311@2|Bacteria,1MWHW@1224|Proteobacteria,2U310@28211|Alphaproteobacteria,43Z8V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF418)	-	-	-	ko:K07148	-	-	-	-	ko00000	-	-	-	DUF418
DYD3_k127_3196886_20	1122613.ATUP01000001_gene559	1.092e-34	143.0	COG2105@1|root,COG2105@2|Bacteria,1NIAM@1224|Proteobacteria,2UG92@28211|Alphaproteobacteria,43YGW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Gamma-glutamyl cyclotransferase, AIG2-like	-	-	-	-	-	-	-	-	-	-	-	-	GGACT
DYD3_k127_3196886_14	1161401.ASJA01000025_gene231	6.333e-66	237.0	COG0179@1|root,COG0179@2|Bacteria,1MVFA@1224|Proteobacteria,2TRTM@28211|Alphaproteobacteria,43XPV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	nagK	-	3.7.1.20	ko:K16165	ko00350,ko01100,ko01120,map00350,map01100,map01120	-	R01085	RC00326,RC00446	ko00000,ko00001,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_3196886_17	1356852.N008_20325	1.234e-53	195.0	COG2128@1|root,COG2128@2|Bacteria,4NEJZ@976|Bacteroidetes,47PGC@768503|Cytophagia	976|Bacteroidetes	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_3196886_0	1382303.JPOM01000001_gene2367	1.828e-181	573.0	COG0686@1|root,COG0686@2|Bacteria,1QTX1@1224|Proteobacteria,2TQQC@28211|Alphaproteobacteria,2KFIP@204458|Caulobacterales	204458|Caulobacterales	C	Belongs to the AlaDH PNT family	-	-	1.4.1.1	ko:K00259	ko00250,ko00430,ko01100,map00250,map00430,map01100	-	R00396	RC00008	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
DYD3_k127_3196886_7	1211115.ALIQ01000002_gene4376	2.341e-123	421.0	COG0179@1|root,COG0179@2|Bacteria,1MV0V@1224|Proteobacteria,2TQYU@28211|Alphaproteobacteria,3NC26@45404|Beijerinckiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	-	-	3.7.1.2	ko:K16171	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R01364	RC00326,RC00446	ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_3196886_4	1122613.ATUP01000001_gene1899	3.069e-148	475.0	COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,2TR81@28211|Alphaproteobacteria,43WZ3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	argF	-	2.1.3.3,2.1.3.6,2.1.3.9	ko:K00611,ko:K09065,ko:K13252	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	M00029,M00844,M00845	R01398,R07245	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	OTCace,OTCace_N
DYD3_k127_3196886_3	1479238.JQMZ01000001_gene2450	5.262e-156	507.0	COG0548@1|root,COG0548@2|Bacteria,1MU17@1224|Proteobacteria,2TQQS@28211|Alphaproteobacteria,43YAH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	NAT, N-acetyltransferase, of N-acetylglutamate synthase	-	-	2.3.1.1,2.7.2.8	ko:K22478	ko00220,ko01210,ko01230,map00220,map01210,map01230	M00028,M00845	R00259,R02649	RC00002,RC00004,RC00043,RC00064	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase,NAT
DYD3_k127_3196886_12	314254.OA2633_12565	1.994e-90	318.0	COG0002@1|root,COG0002@2|Bacteria,1MVJ6@1224|Proteobacteria,2TRMT@28211|Alphaproteobacteria,43YJ2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde	argC	-	1.2.1.38	ko:K00145	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R03443	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh,Semialdhyde_dhC
DYD3_k127_322100_2	1123060.JONP01000001_gene1531	6.077e-44	169.0	COG5517@1|root,COG5517@2|Bacteria,1RAVG@1224|Proteobacteria,2U6A6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Aromatic-ring-hydroxylating dioxygenase, beta subunit	-	-	1.14.12.10	ko:K05550	ko00362,ko00364,ko00622,ko01100,ko01120,ko01220,map00362,map00364,map00622,map01100,map01120,map01220	M00551	R05290,R05291,R05428,R05621,R05622,R05665,R08100,R08101,R08108,R08109,R08110	RC00270,RC01378,RC01450,RC01910	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Ring_hydroxyl_B
DYD3_k127_322100_1	279238.Saro_1680	9.899e-171	549.0	COG4638@1|root,COG4638@2|Bacteria,1N6MJ@1224|Proteobacteria,2TVEE@28211|Alphaproteobacteria,2K0K5@204457|Sphingomonadales	204457|Sphingomonadales	P	alpha subunit	-	-	1.14.12.10	ko:K05549	ko00362,ko00364,ko00622,ko01100,ko01120,ko01220,map00362,map00364,map00622,map01100,map01120,map01220	M00551	R05290,R05291,R05428,R05621,R05622,R05665,R08100,R08101,R08108,R08109,R08110	RC00270,RC01378,RC01450,RC01910	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_322100_4	743719.PaelaDRAFT_3975	1.249e-19	92.0	COG3801@1|root,COG3801@2|Bacteria	2|Bacteria	S	YjbR	-	-	-	-	-	-	-	-	-	-	-	-	YjbR
DYD3_k127_322100_0	314254.OA2633_10369	0.0	1141.0	COG0187@1|root,COG0187@2|Bacteria,1MVKT@1224|Proteobacteria,2TRBK@28211|Alphaproteobacteria,43W9Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrB	-	5.99.1.3	ko:K02470	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
DYD3_k127_322100_5	102125.Xen7305DRAFT_00037910	3.478e-12	74.0	COG3772@1|root,COG3772@2|Bacteria,1G7YF@1117|Cyanobacteria,3VK4T@52604|Pleurocapsales	1117|Cyanobacteria	G	Phage lysozyme	-	-	3.2.1.17	ko:K01185	-	-	-	-	ko00000,ko01000	-	-	-	Phage_lysozyme
DYD3_k127_322100_3	1095772.CAHH01000037_gene1832	4.667e-42	161.0	2CHCP@1|root,32S5R@2|Bacteria,2IRB0@201174|Actinobacteria	201174|Actinobacteria	S	Domain of unknown function (DU1801)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
DYD3_k127_322100_6	1206732.BAGD01000039_gene1322	1.263e-07	62.0	2EJQK@1|root,33DFE@2|Bacteria,2IND9@201174|Actinobacteria,4G291@85025|Nocardiaceae	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3300037_0	366602.Caul_4162	0.0	1560.0	COG2834@1|root,COG2931@1|root,COG4932@1|root,COG2834@2|Bacteria,COG2931@2|Bacteria,COG4932@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	COG2931 RTX toxins and related Ca2 -binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	Cadherin,HCBP_related,He_PIG,HemolysinCabind
DYD3_k127_3300037_5	1537715.JQFJ01000002_gene595	0.0007521	53.0	COG0823@1|root,COG1228@1|root,COG0823@2|Bacteria,COG1228@2|Bacteria,1MX3A@1224|Proteobacteria,2TUU6@28211|Alphaproteobacteria,2K0I3@204457|Sphingomonadales	204457|Sphingomonadales	QU	Periplasmic component of the Tol biopolymer transport system	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1,PD40
DYD3_k127_3300037_2	1449049.JONW01000006_gene3224	7.311e-113	405.0	COG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,2TTX9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	type I secretion membrane fusion protein, HlyD family	hlyD	-	-	ko:K02022,ko:K11003	ko03070,ko05133,map03070,map05133	M00325,M00575	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	8.A.1.3.1,8.A.1.3.2	-	-	Biotin_lipoyl_2,HlyD,HlyD_3
DYD3_k127_3300037_1	1449049.JONW01000006_gene3223	3.242e-302	944.0	COG2274@1|root,COG2274@2|Bacteria,1R2T0@1224|Proteobacteria,2USBQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	COG2274 ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	hlyB	-	-	ko:K06147,ko:K11004	ko02010,ko03070,ko05133,map02010,map03070,map05133	M00325,M00575	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	3.A.1.106,3.A.1.109,3.A.1.109.1,3.A.1.109.2,3.A.1.21	-	-	ABC_membrane,ABC_tran,Peptidase_C39
DYD3_k127_3300037_4	717785.HYPMC_3864	2.62e-45	167.0	COG0640@1|root,COG0640@2|Bacteria,1RH5P@1224|Proteobacteria,2U960@28211|Alphaproteobacteria,3N8NC@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory protein, arsR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_3300037_3	1210884.HG799471_gene14625	5.518e-52	187.0	COG3832@1|root,COG3832@2|Bacteria,2J16I@203682|Planctomycetes	203682|Planctomycetes	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_3374666_0	1120956.JHZK01000029_gene89	2.333e-275	855.0	COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,2TSYQ@28211|Alphaproteobacteria,1JNCB@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	ftsH	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,FtsH_ext,Peptidase_M41
DYD3_k127_3374666_2	935840.JAEQ01000025_gene4191	2.759e-12	79.0	2E3X5@1|root,32YUB@2|Bacteria,1N766@1224|Proteobacteria,2UFVD@28211|Alphaproteobacteria,43M4C@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Protein of unknwon function (DUF3008)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3008
DYD3_k127_3374666_3	883078.HMPREF9695_04017	4.942e-08	59.0	COG1359@1|root,COG1359@2|Bacteria,1NGPW@1224|Proteobacteria,2U9QJ@28211|Alphaproteobacteria,3JZW5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_3374666_1	349124.Hhal_1769	2.138e-68	238.0	COG0294@1|root,COG0294@2|Bacteria,1MUIR@1224|Proteobacteria,1RM8G@1236|Gammaproteobacteria,1WXND@135613|Chromatiales	135613|Chromatiales	H	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives	folP	-	2.5.1.15	ko:K00796	ko00790,ko01100,map00790,map01100	M00126,M00841	R03066,R03067	RC00121,RC00842	ko00000,ko00001,ko00002,ko01000	-	-	-	Pterin_bind
DYD3_k127_3391053_0	1479238.JQMZ01000001_gene788	2.603e-194	620.0	COG0322@1|root,COG0322@2|Bacteria,1MV38@1224|Proteobacteria,2TT32@28211|Alphaproteobacteria,43WNP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision	uvrC	GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009380,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:1902494,GO:1905347,GO:1905348,GO:1990391	-	ko:K03703	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N
DYD3_k127_3391053_4	627192.SLG_01790	1.435e-53	212.0	COG3384@1|root,COG3384@2|Bacteria,1RA8A@1224|Proteobacteria,2U5U7@28211|Alphaproteobacteria,2K4SD@204457|Sphingomonadales	204457|Sphingomonadales	S	Protocatechuate 4,5-dioxygenase	-	-	1.13.11.8	ko:K04100	ko00362,ko00624,ko00627,ko01120,map00362,map00624,map00627,map01120	-	R01632,R03550,R04280,R09565	RC00233,RC00387,RC00535,RC02567,RC02694	br01602,ko00000,ko00001,ko01000	-	-	-	LigA
DYD3_k127_3391053_1	627192.SLG_01800	8.194e-152	486.0	COG3384@1|root,COG3384@2|Bacteria,1MW77@1224|Proteobacteria,2TRP1@28211|Alphaproteobacteria,2K02T@204457|Sphingomonadales	204457|Sphingomonadales	S	Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols	-	-	1.13.11.8	ko:K04101	ko00362,ko00624,ko00627,ko01120,map00362,map00624,map00627,map01120	-	R01632,R03550,R04280,R09565	RC00233,RC00387,RC00535,RC02567,RC02694	br01602,ko00000,ko00001,ko01000	-	-	-	LigB
DYD3_k127_3391053_7	1123059.KB823012_gene2515	3.624e-24	116.0	COG1539@1|root,COG1539@2|Bacteria,1NC6S@1224|Proteobacteria,2UH8Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin	-	-	1.13.11.81,4.1.2.25,5.1.99.8	ko:K01633	ko00790,ko01100,map00790,map01100	M00126,M00840	R03504,R11037,R11073	RC00721,RC00943,RC01479,RC03333,RC03334	ko00000,ko00001,ko00002,ko01000	-	-	-	FolB
DYD3_k127_3391053_3	1280947.HY30_00785	1.957e-75	268.0	COG1028@1|root,COG1028@2|Bacteria,1MUUV@1224|Proteobacteria,2TR0A@28211|Alphaproteobacteria,43WNQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	ptr1	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_3391053_2	1122613.ATUP01000001_gene2062	1.317e-77	271.0	COG0530@1|root,COG0530@2|Bacteria,1MU3R@1224|Proteobacteria,2TST5@28211|Alphaproteobacteria,43XE2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Sodium/calcium exchanger protein	-	-	-	ko:K07301	-	-	-	-	ko00000,ko02000	2.A.19.5	-	-	Na_Ca_ex
DYD3_k127_3391053_6	551275.KB899546_gene2206	3.196e-27	118.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2V7E0@28211|Alphaproteobacteria,43WW8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	sensor histidine kinase response regulator	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,Response_reg
DYD3_k127_3391053_5	1161401.ASJA01000003_gene2951	8.335e-36	141.0	COG1051@1|root,COG1051@2|Bacteria,1N0YW@1224|Proteobacteria,2UC2E@28211|Alphaproteobacteria,43ZVA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the Nudix hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_3398516_8	1282876.BAOK01000002_gene533	1.445e-95	338.0	COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1R81Z@1224|Proteobacteria,2U2DW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	CHAT
DYD3_k127_3398516_13	1282876.BAOK01000002_gene534	9.635e-08	63.0	28R1F@1|root,2ZDG2@2|Bacteria,1PAY5@1224|Proteobacteria,2UX83@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3398516_9	1282876.BAOK01000002_gene535	6.894e-61	230.0	COG4252@1|root,COG4252@2|Bacteria,1P08C@1224|Proteobacteria,2UVCM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	CHASE2 domain	-	-	-	-	-	-	-	-	-	-	-	-	CHASE2
DYD3_k127_3398516_2	69395.JQLZ01000002_gene1025	3.639e-134	439.0	COG0715@1|root,COG0715@2|Bacteria,1MVJA@1224|Proteobacteria,2TTB8@28211|Alphaproteobacteria,2KHUV@204458|Caulobacterales	204458|Caulobacterales	P	TIGRFAM ABC transporter periplasmic binding protein, urea carboxylase region	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1_2
DYD3_k127_3398516_4	190650.CC_1832	4.806e-109	359.0	COG0600@1|root,COG0600@2|Bacteria,1MWDJ@1224|Proteobacteria,2TTR3@28211|Alphaproteobacteria,2KIAQ@204458|Caulobacterales	204458|Caulobacterales	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_3398516_5	69395.JQLZ01000002_gene1023	7.572e-108	368.0	COG1116@1|root,COG1116@2|Bacteria,1MWZG@1224|Proteobacteria,2TT79@28211|Alphaproteobacteria,2KI5P@204458|Caulobacterales	204458|Caulobacterales	P	ABC transporter	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_3398516_1	69395.JQLZ01000002_gene1022	8.974e-241	761.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TR00@28211|Alphaproteobacteria,2KIEA@204458|Caulobacterales	204458|Caulobacterales	J	Amidase	-	-	3.5.1.54	ko:K01457	ko00220,ko00791,ko01100,ko01120,map00220,map00791,map01100,map01120	-	R00005	RC02756	ko00000,ko00001,ko01000	-	-	-	Amidase
DYD3_k127_3398516_0	190650.CC_1829	0.0	1683.0	COG0439@1|root,COG1984@1|root,COG2049@1|root,COG4770@1|root,COG0439@2|Bacteria,COG1984@2|Bacteria,COG2049@2|Bacteria,COG4770@2|Bacteria,1MU4H@1224|Proteobacteria,2TRU5@28211|Alphaproteobacteria,2KI50@204458|Caulobacterales	204458|Caulobacterales	EI	Allophanate hydrolase subunit 2	-	-	6.3.4.6	ko:K01941	ko00220,ko00791,ko01100,map00220,map00791,map01100	-	R00774	RC00378	ko00000,ko00001,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,CT_A_B,CT_C_D
DYD3_k127_3398516_6	555793.WSK_2713	8.525e-105	344.0	COG3665@1|root,COG3665@2|Bacteria,1N9DM@1224|Proteobacteria,2TU1Z@28211|Alphaproteobacteria,2K0UW@204457|Sphingomonadales	204457|Sphingomonadales	S	Domain of unknown function (DUF1989)	-	-	-	ko:K09967	-	-	-	-	ko00000	-	-	-	DUF1989
DYD3_k127_3398516_3	69395.JQLZ01000002_gene1019	2.266e-114	383.0	COG3665@1|root,COG3665@2|Bacteria,1N2KR@1224|Proteobacteria,2TSBV@28211|Alphaproteobacteria,2KHVP@204458|Caulobacterales	204458|Caulobacterales	S	Domain of unknown function (DUF1989)	-	-	-	ko:K09967	-	-	-	-	ko00000	-	-	-	DUF1989
DYD3_k127_3398516_10	69395.JQLZ01000002_gene1018	9.275e-58	204.0	COG0864@1|root,COG0864@2|Bacteria,1RDN6@1224|Proteobacteria,2U61K@28211|Alphaproteobacteria,2KJ12@204458|Caulobacterales	204458|Caulobacterales	K	NikR C terminal nickel binding domain	-	-	-	ko:K07722	-	-	-	-	ko00000,ko03000	-	-	-	NikR_C,RHH_1
DYD3_k127_3398516_11	234267.Acid_2033	2.274e-55	214.0	COG0666@1|root,COG0666@2|Bacteria,3Y8C5@57723|Acidobacteria	57723|Acidobacteria	S	Ankyrin repeats (3 copies)	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2
DYD3_k127_3398516_12	195250.CM001776_gene1121	4.961e-37	152.0	COG0491@1|root,COG0491@2|Bacteria,1G400@1117|Cyanobacteria,1H175@1129|Synechococcus	1117|Cyanobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_3398516_7	886293.Sinac_1154	2.033e-98	337.0	COG2960@1|root,COG2960@2|Bacteria,2J2KP@203682|Planctomycetes	203682|Planctomycetes	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_340467_3	1161401.ASJA01000026_gene26	2.909e-120	394.0	COG2064@1|root,COG2064@2|Bacteria,1MWAZ@1224|Proteobacteria,2TSFA@28211|Alphaproteobacteria,43X5E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	type II secretion system protein	tadC	-	-	ko:K12511	-	-	-	-	ko00000,ko02044	-	-	-	T2SSF
DYD3_k127_340467_4	1161401.ASJA01000026_gene25	6.291e-120	393.0	COG4965@1|root,COG4965@2|Bacteria,1MUXK@1224|Proteobacteria,2TRBI@28211|Alphaproteobacteria,43WB6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Secretion system protein	tadB	-	-	ko:K12510	-	-	-	-	ko00000,ko02044	-	-	-	T2SSF
DYD3_k127_340467_0	394221.Mmar10_0422	3.648e-242	756.0	COG4962@1|root,COG4962@2|Bacteria,1R7EN@1224|Proteobacteria,2TRNT@28211|Alphaproteobacteria,43WDA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	COG4962 Flp pilus assembly protein, ATPase CpaF	cpaF	-	-	ko:K02283	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	T2SSE
DYD3_k127_340467_2	1161401.ASJA01000026_gene23	3.106e-161	527.0	COG4963@1|root,COG4963@2|Bacteria,1MWNY@1224|Proteobacteria,2TUDS@28211|Alphaproteobacteria,43WPH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Pilus assembly protein	cpaE	-	-	ko:K02282	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	AAA_31,CBP_BcsQ
DYD3_k127_340467_6	314254.OA2633_13175	3.142e-35	145.0	COG5461@1|root,COG5461@2|Bacteria,1MWWE@1224|Proteobacteria,2TU2Q@28211|Alphaproteobacteria,43Y86@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Pilus biogenesis CpaD protein (pilus_cpaD)	cpaD	-	-	ko:K02281	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	Pilus_CpaD
DYD3_k127_340467_1	1161401.ASJA01000026_gene21	2.744e-171	556.0	COG4964@1|root,COG4964@2|Bacteria,1MV8G@1224|Proteobacteria,2TRNN@28211|Alphaproteobacteria,43X2H@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Belongs to the GSP D family	cpaC	-	-	ko:K02280	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	BON,Secretin,T2SS-T3SS_pil_N
DYD3_k127_340467_5	1161401.ASJA01000026_gene20	1.813e-51	189.0	COG3745@1|root,COG3745@2|Bacteria,1MW75@1224|Proteobacteria,2TTPE@28211|Alphaproteobacteria,43XQS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Pilus assembly protein CpaB	cpaB	-	-	ko:K02279	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	RcpC,SAF
DYD3_k127_343554_2	1298858.AUEL01000019_gene3247	6.746e-27	127.0	COG2388@1|root,COG2388@2|Bacteria,1Q6HH@1224|Proteobacteria,2VCN4@28211|Alphaproteobacteria,43QAH@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	GCN5-related N-acetyl-transferase	-	-	-	ko:K06975	-	-	-	-	ko00000	-	-	-	Acetyltransf_CG
DYD3_k127_343554_1	1280950.HJO_01910	4.803e-66	247.0	COG0625@1|root,COG0625@2|Bacteria,1MY47@1224|Proteobacteria,2TVGA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N
DYD3_k127_343554_0	113395.AXAI01000002_gene5246	1.404e-96	322.0	COG0702@1|root,COG0702@2|Bacteria,1MYVU@1224|Proteobacteria,2TTHA@28211|Alphaproteobacteria,3JUST@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	NAD(P)H-binding	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_10
DYD3_k127_3440247_2	1545915.JROG01000004_gene1689	3.881e-207	661.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_3440247_4	394221.Mmar10_3046	1.745e-46	171.0	COG0858@1|root,COG0858@2|Bacteria,1MZPE@1224|Proteobacteria,2UCJF@28211|Alphaproteobacteria,43Y3F@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA	rbfA	-	-	ko:K02834	-	-	-	-	ko00000,ko03009	-	-	-	RBFA
DYD3_k127_3440247_5	518766.Rmar_1210	0.000946	44.0	COG4636@1|root,COG4636@2|Bacteria,4NQFH@976|Bacteroidetes,1FK7E@1100069|Bacteroidetes Order II. Incertae sedis	976|Bacteroidetes	S	Putative restriction endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	Uma2
DYD3_k127_3440247_0	1161401.ASJA01000003_gene2774	0.0	1033.0	COG0532@1|root,COG0532@2|Bacteria,1MV26@1224|Proteobacteria,2TQMY@28211|Alphaproteobacteria,43WQG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	infB	-	-	ko:K02519	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
DYD3_k127_3440247_3	394221.Mmar10_3042	6.482e-54	197.0	COG1358@1|root,COG2740@1|root,COG1358@2|Bacteria,COG2740@2|Bacteria,1RHPR@1224|Proteobacteria,2U9RY@28211|Alphaproteobacteria,43Y6N@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Protein of unknown function (DUF448)	MA20_23920	-	-	ko:K07742	-	-	-	-	ko00000	-	-	-	DUF448,Ribosomal_L7Ae
DYD3_k127_3440247_1	1479238.JQMZ01000001_gene556	2.338e-215	677.0	COG0195@1|root,COG0195@2|Bacteria,1MWT7@1224|Proteobacteria,2TRQN@28211|Alphaproteobacteria,43WZC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Participates in both transcription termination and antitermination	nusA	-	-	ko:K02600	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	HHH_5,KH_5,NusA_N,S1
DYD3_k127_3451659_37	582402.Hbal_1408	8.395e-20	95.0	COG0810@1|root,COG0810@2|Bacteria,1NH16@1224|Proteobacteria,2UM2X@28211|Alphaproteobacteria,43YYD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_3451659_9	1280947.HY30_09345	4.88e-173	562.0	COG2070@1|root,COG2070@2|Bacteria,1MWMI@1224|Proteobacteria,2U245@28211|Alphaproteobacteria,43ZB6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG2070 Dioxygenases related to 2-nitropropane dioxygenase	-	-	-	ko:K15329	-	-	-	-	ko00000,ko01008	-	-	-	Acyl_transf_1,NMO
DYD3_k127_3451659_1	886293.Sinac_3636	0.0	1179.0	COG0236@1|root,COG0764@1|root,COG1028@1|root,COG3266@1|root,COG3321@1|root,COG0236@2|Bacteria,COG0764@2|Bacteria,COG1028@2|Bacteria,COG3266@2|Bacteria,COG3321@2|Bacteria,2IY7E@203682|Planctomycetes	203682|Planctomycetes	IQ	Beta-ketoacyl synthase	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,ketoacyl-synt
DYD3_k127_3451659_0	1121949.AQXT01000002_gene1417	0.0	1833.0	COG0764@1|root,COG0810@1|root,COG3321@1|root,COG0764@2|Bacteria,COG0810@2|Bacteria,COG3321@2|Bacteria,1QUWM@1224|Proteobacteria,2UPMQ@28211|Alphaproteobacteria,43ZBC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IMQ	Belongs to the beta-ketoacyl-ACP synthases family	-	-	-	-	-	-	-	-	-	-	-	-	FabA,KAsynt_C_assoc,Ketoacyl-synt_C,ketoacyl-synt
DYD3_k127_3451659_36	395964.KE386496_gene291	8.126e-22	105.0	COG2091@1|root,COG2091@2|Bacteria,1MZHC@1224|Proteobacteria,2UFA4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Belongs to the P-Pant transferase superfamily	-	-	-	ko:K06133	ko00770,map00770	-	R01625	RC00002	ko00000,ko00001,ko01000	-	-	-	ACPS
DYD3_k127_3451659_33	190650.CC_0184	5.33e-35	152.0	COG1989@1|root,COG1989@2|Bacteria,1MUZF@1224|Proteobacteria,2UAW0@28211|Alphaproteobacteria,2KGZQ@204458|Caulobacterales	204458|Caulobacterales	NOU	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	-	-	3.4.23.43	ko:K02654	-	M00331	-	-	ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2	-	-	DiS_P_DiS,Peptidase_A24
DYD3_k127_3451659_34	743836.AYNA01000117_gene910	8.655e-24	109.0	COG5622@1|root,COG5622@2|Bacteria,1RIEJ@1224|Proteobacteria,2U7UE@28211|Alphaproteobacteria,36ZY3@31993|Methylocystaceae	28211|Alphaproteobacteria	N	Protein required for attachment to host cells	MA20_35675	-	-	-	-	-	-	-	-	-	-	-	Host_attach
DYD3_k127_3451659_22	1408419.JHYG01000001_gene1910	2.471e-62	225.0	COG1802@1|root,COG1802@2|Bacteria,1NWSI@1224|Proteobacteria,2TTXQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	GntR family	-	-	-	ko:K11475	-	-	-	-	ko00000,ko03000	-	-	-	FCD,GntR
DYD3_k127_3451659_6	935840.JAEQ01000018_gene2029	1.698e-213	673.0	COG0404@1|root,COG0404@2|Bacteria,1MWZS@1224|Proteobacteria,2TSVD@28211|Alphaproteobacteria,43JE4@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Aminomethyltransferase folate-binding domain	-	-	-	ko:K15064	ko00627,ko01120,map00627,map01120	-	R09270	RC00113,RC00392	ko00000,ko00001,ko01000	-	-	-	GCV_T,GCV_T_C
DYD3_k127_3451659_8	234267.Acid_5827	1.261e-196	641.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5,zf-C4_Topoisom
DYD3_k127_3451659_23	314270.RB2083_2224	3.365e-61	221.0	COG0625@1|root,COG0625@2|Bacteria,1R6UY@1224|Proteobacteria,2UC3C@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_N_3
DYD3_k127_3451659_18	1340493.JNIF01000003_gene3476	1.079e-73	271.0	COG0666@1|root,COG0666@2|Bacteria	2|Bacteria	G	response to abiotic stimulus	moxJ	-	-	ko:K06867	-	-	-	-	ko00000	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5,SBP_bac_3
DYD3_k127_3451659_38	555793.WSK_4047	2.684e-18	97.0	28NHI@1|root,2ZBJA@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3451659_5	627192.SLG_12400	1.308e-217	704.0	COG1629@1|root,COG4771@2|Bacteria,1R8R0@1224|Proteobacteria,2TTH0@28211|Alphaproteobacteria,2K0E8@204457|Sphingomonadales	204457|Sphingomonadales	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_3451659_17	1192034.CAP_3388	2.899e-74	258.0	COG0346@1|root,COG0346@2|Bacteria,1RAC9@1224|Proteobacteria,432ZG@68525|delta/epsilon subdivisions,2WXG3@28221|Deltaproteobacteria,2Z03C@29|Myxococcales	28221|Deltaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_3451659_2	1122137.AQXF01000004_gene1584	3.863e-236	753.0	COG4774@1|root,COG4774@2|Bacteria,1NMCN@1224|Proteobacteria,2U1C8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TonB-dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_3451659_16	627192.SLG_27940	5.005e-90	310.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3451659_3	627192.SLG_07280	3.093e-228	730.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1R7EM@1224|Proteobacteria,2TRZT@28211|Alphaproteobacteria,2K9UV@204457|Sphingomonadales	204457|Sphingomonadales	C	PQQ-like domain	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3
DYD3_k127_3451659_25	627192.SLG_12220	1.245e-59	219.0	COG3386@1|root,COG3386@2|Bacteria,1MXB7@1224|Proteobacteria,2U2RZ@28211|Alphaproteobacteria,2KAU6@204457|Sphingomonadales	204457|Sphingomonadales	G	PFAM SMP-30 Gluconolaconase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3451659_12	627192.SLG_12210	3.72e-117	401.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3451659_26	627192.SLG_12210	6.055e-53	198.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3451659_31	999547.KI421500_gene3587	1.776e-37	145.0	COG1352@1|root,COG2201@1|root,COG2202@1|root,COG1352@2|Bacteria,COG2201@2|Bacteria,COG2202@2|Bacteria,1NWNJ@1224|Proteobacteria,2TW84@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NT	protein-glutamate methylesterase	-	-	2.1.1.80,3.1.1.61	ko:K13924	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko02022,ko02035	-	-	-	CheB_methylest,CheR,CheR_N,HWE_HK,PAS_10,PAS_3,PAS_4
DYD3_k127_3451659_40	1238182.C882_1127	1.187e-08	57.0	COG0784@1|root,COG2202@1|root,COG2203@1|root,COG3920@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG3920@2|Bacteria,1NC9X@1224|Proteobacteria,2TT77@28211|Alphaproteobacteria,2JYZY@204441|Rhodospirillales	204441|Rhodospirillales	T	HWE histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	GAF,HWE_HK,PAS_4,PHY,Response_reg
DYD3_k127_3451659_19	1280954.HPO_04265	1.649e-69	242.0	2DXVU@1|root,32V47@2|Bacteria,1N4I2@1224|Proteobacteria,2UDNQ@28211|Alphaproteobacteria,43Y1N@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Lipid A 3-O-deacylase (PagL)	-	-	-	-	-	-	-	-	-	-	-	-	PagL
DYD3_k127_3451659_27	394221.Mmar10_2507	2.624e-51	184.0	COG0745@1|root,COG0745@2|Bacteria,1QUSA@1224|Proteobacteria,2TW5G@28211|Alphaproteobacteria,43XYY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KT	response regulator	QU41_05915	-	-	ko:K13589	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg
DYD3_k127_3451659_15	1333998.M2A_2199	5.631e-92	312.0	COG3741@1|root,COG3741@2|Bacteria,1MY4D@1224|Proteobacteria,2TUPZ@28211|Alphaproteobacteria,4BQCI@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	N-formylglutamate amidohydrolase	MA20_06380	-	3.5.1.68	ko:K01458	ko00340,ko00630,map00340,map00630	-	R00525	RC00165,RC00323	ko00000,ko00001,ko01000	-	-	-	FGase
DYD3_k127_3451659_29	1123503.KB908057_gene2565	5.849e-48	178.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,2KGII@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_19,HTH_3
DYD3_k127_3451659_14	1161401.ASJA01000012_gene823	6.141e-95	319.0	COG0483@1|root,COG0483@2|Bacteria,1PPJ0@1224|Proteobacteria,2TQTX@28211|Alphaproteobacteria,43WP5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	hisN	-	3.1.3.15,3.1.3.25,3.1.3.93	ko:K01092,ko:K18649	ko00053,ko00340,ko00521,ko00562,ko01100,ko01110,ko01230,ko04070,map00053,map00340,map00521,map00562,map01100,map01110,map01230,map04070	M00026,M00114,M00131	R01185,R01186,R01187,R03013,R07674	RC00017,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
DYD3_k127_3451659_21	1479238.JQMZ01000001_gene719	1.3e-63	231.0	COG4798@1|root,COG4798@2|Bacteria,1NNHX@1224|Proteobacteria,2U5HN@28211|Alphaproteobacteria,43X66@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3451659_30	1353528.DT23_11185	6.2e-48	176.0	COG0071@1|root,COG0071@2|Bacteria,1RH2X@1224|Proteobacteria,2U96D@28211|Alphaproteobacteria,2XN8E@285107|Thioclava	28211|Alphaproteobacteria	O	Belongs to the small heat shock protein (HSP20) family	ibpA	-	-	ko:K04080	-	-	-	-	ko00000,ko03110	-	-	-	HSP20
DYD3_k127_3451659_28	1121123.AUAO01000001_gene1014	5.112e-48	180.0	COG0117@1|root,COG0117@2|Bacteria,1MUWT@1224|Proteobacteria,2TR70@28211|Alphaproteobacteria,2KGZ5@204458|Caulobacterales	204458|Caulobacterales	H	Cytidine and deoxycytidylate deaminase zinc-binding region	-	-	1.1.1.193,3.5.4.26	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF559,dCMP_cyt_deam_1
DYD3_k127_3451659_13	1161401.ASJA01000012_gene815	9.983e-108	353.0	COG0588@1|root,COG0588@2|Bacteria,1MUVE@1224|Proteobacteria,2TSQ0@28211|Alphaproteobacteria,43WIR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily	gpmA	GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031	5.4.2.11	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	His_Phos_1
DYD3_k127_3451659_7	1121949.AQXT01000002_gene2429	1.127e-200	633.0	COG1109@1|root,COG1109@2|Bacteria,1MU24@1224|Proteobacteria,2TQWH@28211|Alphaproteobacteria,43WHA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate	glmM	-	5.4.2.10	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	-	R02060	RC00408	ko00000,ko00001,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
DYD3_k127_3451659_4	1161401.ASJA01000017_gene1289	8.218e-218	681.0	COG0451@1|root,COG0451@2|Bacteria,1MW8N@1224|Proteobacteria,2TSJB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	GM	dehydratase	-	-	3.13.1.1	ko:K06118	ko00520,ko00561,map00520,map00561	-	R05775	RC01469	ko00000,ko00001,ko01000	-	-	-	Epimerase
DYD3_k127_3451659_10	314254.OA2633_08179	4.052e-146	472.0	COG0624@1|root,COG0624@2|Bacteria,1MVBR@1224|Proteobacteria,2TRUK@28211|Alphaproteobacteria,43X6S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the peptidase M20A family. ArgE subfamily	argE	-	3.5.1.16	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R00669,R09107	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_3451659_11	394221.Mmar10_2602	9.908e-125	418.0	COG4961@1|root,COG4961@2|Bacteria,1MWXU@1224|Proteobacteria,2TRQP@28211|Alphaproteobacteria,440Q4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Putative Flp pilus-assembly TadE/G-like	-	-	-	-	-	-	-	-	-	-	-	-	Tad,VWA
DYD3_k127_3451659_32	1449049.JONW01000008_gene503	6.125e-37	147.0	COG0545@1|root,COG0545@2|Bacteria,1RDA1@1224|Proteobacteria,2UAQW@28211|Alphaproteobacteria,2KGV2@204458|Caulobacterales	204458|Caulobacterales	M	peptidyl-prolyl cis-trans isomerase	-	-	5.2.1.8	ko:K03773	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	FKBP_C,FKBP_N
DYD3_k127_3451659_39	1382303.JPOM01000001_gene2303	8.776e-13	80.0	COG5653@1|root,COG5653@2|Bacteria,1RFMQ@1224|Proteobacteria,2UBG7@28211|Alphaproteobacteria,2KK4M@204458|Caulobacterales	204458|Caulobacterales	M	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_6
DYD3_k127_3480422_2	1089552.KI911559_gene1777	2.729e-53	194.0	COG2862@1|root,COG2862@2|Bacteria,1NBZT@1224|Proteobacteria,2UKFV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein family, UPF0114	-	-	-	-	-	-	-	-	-	-	-	-	UPF0114
DYD3_k127_3480422_0	1161401.ASJA01000006_gene1889	9.467e-276	863.0	COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,2TRU4@28211|Alphaproteobacteria,43W9P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	M13 family peptidase	-	-	3.4.24.71	ko:K01415,ko:K07386	-	-	-	-	ko00000,ko01000,ko01002,ko04147	-	-	-	Peptidase_M13,Peptidase_M13_N
DYD3_k127_3480422_4	1161401.ASJA01000003_gene2881	5.335e-22	99.0	COG1324@1|root,COG1324@2|Bacteria,1N6TN@1224|Proteobacteria,2UF5Y@28211|Alphaproteobacteria,43YGK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	protein involved in tolerance to divalent cations	cutA	-	-	ko:K03926	-	-	-	-	ko00000	-	-	-	CutA1
DYD3_k127_3480422_1	314254.OA2633_06389	3.566e-103	340.0	COG0603@1|root,COG0603@2|Bacteria,1MU5V@1224|Proteobacteria,2TU7F@28211|Alphaproteobacteria,43WE0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	queC	-	6.3.4.20	ko:K06920	ko00790,ko01100,map00790,map01100	-	R09978	RC00959	ko00000,ko00001,ko01000,ko03016	-	-	-	QueC
DYD3_k127_3480422_3	1247963.JPHU01000015_gene1107	1.22e-33	140.0	COG0602@1|root,COG0602@2|Bacteria,1MUJ2@1224|Proteobacteria,2TU1S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	queE	-	4.3.99.3	ko:K10026	ko00790,ko01100,map00790,map01100	-	R10002	RC02989	ko00000,ko00001,ko01000,ko03016	-	-	-	Fer4_14,Radical_SAM
DYD3_k127_356188_3	1121124.JNIX01000014_gene1270	1.203e-146	473.0	COG0332@1|root,COG0332@2|Bacteria,1NAGY@1224|Proteobacteria,2U61Y@28211|Alphaproteobacteria,2KHU6@204458|Caulobacterales	204458|Caulobacterales	I	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal	-	-	2.3.1.180	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00082,M00083	R10707	RC00004,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACP_syn_III_C,ketoacyl-synt
DYD3_k127_356188_5	1114964.L485_19660	9.277e-52	199.0	28H8Z@1|root,2Z7KS@2|Bacteria,1MW9T@1224|Proteobacteria,2U5RX@28211|Alphaproteobacteria,2K5KG@204457|Sphingomonadales	204457|Sphingomonadales	S	Yip1 domain	-	-	-	-	-	-	-	-	-	-	-	-	Yip1
DYD3_k127_356188_2	745310.G432_18105	3.409e-283	907.0	COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,2TS4W@28211|Alphaproteobacteria,2KEEP@204457|Sphingomonadales	204457|Sphingomonadales	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_356188_4	502025.Hoch_2691	1.876e-61	227.0	COG0715@1|root,COG0715@2|Bacteria,1RJQU@1224|Proteobacteria,438WV@68525|delta/epsilon subdivisions,2X42B@28221|Deltaproteobacteria,2YY20@29|Myxococcales	28221|Deltaproteobacteria	P	Protein of unknown function (DUF3500)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3500
DYD3_k127_356188_0	1479238.JQMZ01000001_gene2481	0.0	1074.0	COG1002@1|root,COG1002@2|Bacteria,1MWRH@1224|Proteobacteria,2TSWZ@28211|Alphaproteobacteria,43X9K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG1002 Type II restriction enzyme, methylase subunits	-	-	-	-	-	-	-	-	-	-	-	-	N6_Mtase
DYD3_k127_356188_7	1121451.DESAM_20330	1.018e-09	66.0	COG1413@1|root,COG2199@1|root,COG1413@2|Bacteria,COG3706@2|Bacteria,1R5AP@1224|Proteobacteria,42P8K@68525|delta/epsilon subdivisions,2WKU6@28221|Deltaproteobacteria,2M9XY@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	PFAM response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	HEAT_2,Response_reg
DYD3_k127_356188_6	1207063.P24_18631	3.086e-10	67.0	COG0784@1|root,COG0784@2|Bacteria,1N0NS@1224|Proteobacteria,2TV2S@28211|Alphaproteobacteria,2JSQP@204441|Rhodospirillales	204441|Rhodospirillales	T	COG0784 FOG CheY-like receiver	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,cNMP_binding
DYD3_k127_356188_1	450851.PHZ_c0796	0.0	1048.0	COG0556@1|root,COG0556@2|Bacteria,1MUFK@1224|Proteobacteria,2TQSP@28211|Alphaproteobacteria,2KFKE@204458|Caulobacterales	204458|Caulobacterales	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	uvrB	-	-	ko:K03702	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	Helicase_C,ResIII,UVR,UvrB
DYD3_k127_3623370_17	318586.Pden_1222	2.817e-24	110.0	COG3293@1|root,COG3293@2|Bacteria,1REED@1224|Proteobacteria,2U78B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Putative transposase of IS4/5 family (DUF4096)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4096
DYD3_k127_3623370_2	1121374.KB891586_gene2542	8.703e-219	705.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,1RNCM@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL	-	-	1.3.99.16	ko:K07303	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C2
DYD3_k127_3623370_12	452637.Oter_2803	3.037e-61	214.0	COG2080@1|root,COG2080@2|Bacteria,46VAB@74201|Verrucomicrobia	74201|Verrucomicrobia	C	[2Fe-2S] binding domain	-	-	1.3.99.16	ko:K07302	-	-	-	-	ko00000,ko01000	-	-	-	Fer2,Fer2_2
DYD3_k127_3623370_11	450851.PHZ_c0552	6.399e-64	241.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,2KF2A@204458|Caulobacterales	204458|Caulobacterales	T	Diguanylate cyclase	-	-	3.1.4.52	ko:K13245	ko04112,map04112	-	R08991	RC00296	ko00000,ko00001,ko01000	-	-	-	EAL,GGDEF
DYD3_k127_3623370_10	1333998.M2A_1522	2.372e-64	233.0	COG1670@1|root,COG1670@2|Bacteria,1MVG4@1224|Proteobacteria,2TUIK@28211|Alphaproteobacteria,4BQQX@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	rimJ	-	2.3.1.128	ko:K03790	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_3
DYD3_k127_3623370_15	1161401.ASJA01000014_gene1034	5.692e-40	157.0	COG3346@1|root,COG3346@2|Bacteria,1PCKX@1224|Proteobacteria,2VA0W@28211|Alphaproteobacteria,43YE9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	SURF1-like protein	-	-	-	ko:K14998	-	-	-	-	ko00000,ko03029	3.D.4.8	-	-	SURF1
DYD3_k127_3623370_14	1123503.KB908056_gene1452	7.041e-42	171.0	COG5349@1|root,COG5349@2|Bacteria,1N0WU@1224|Proteobacteria,2UCE7@28211|Alphaproteobacteria,2KH29@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF983)	-	-	-	-	-	-	-	-	-	-	-	-	DUF983
DYD3_k127_3623370_4	1479238.JQMZ01000001_gene1290	7.325e-138	443.0	COG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,2TQWA@28211|Alphaproteobacteria,43WFB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG1845 Heme copper-type cytochrome quinol oxidase, subunit 3	ctaE	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.9.3.1	ko:K02276	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.4,3.D.4.6	-	-	COX3
DYD3_k127_3623370_13	1479238.JQMZ01000001_gene1289	2.311e-56	202.0	COG3175@1|root,COG3175@2|Bacteria,1RDTU@1224|Proteobacteria,2U6ZT@28211|Alphaproteobacteria,43XKP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I	ctaG	-	-	ko:K02258	ko00190,ko01100,ko04714,map00190,map01100,map04714	M00154	-	-	ko00000,ko00001,ko00002,ko03029	3.D.4.8	-	-	CtaG_Cox11
DYD3_k127_3623370_5	1479238.JQMZ01000001_gene1287	1.007e-109	365.0	COG0109@1|root,COG0109@2|Bacteria,1MW3S@1224|Proteobacteria,2TRD8@28211|Alphaproteobacteria,43WYQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group	ctaB	GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.141	ko:K02257	ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714	M00154	R07411	RC01786	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029	-	-	-	UbiA
DYD3_k127_3623370_0	509190.Cseg_0284	3.325e-275	862.0	COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,2TQP1@28211|Alphaproteobacteria,2KFEV@204458|Caulobacterales	204458|Caulobacterales	C	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B	-	-	1.9.3.1	ko:K02274	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6	-	-	COX1
DYD3_k127_3623370_8	314254.OA2633_13990	4.1e-84	295.0	COG1622@1|root,COG1622@2|Bacteria,1MWHZ@1224|Proteobacteria,2TRK6@28211|Alphaproteobacteria,43XHI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B)	coxB	-	1.9.3.1	ko:K02275	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.2,3.D.4.4,3.D.4.6	-	-	COX2,COX2_TM
DYD3_k127_3623370_18	366602.Caul_3179	4.595e-20	100.0	COG3063@1|root,COG3063@2|Bacteria,1QVFJ@1224|Proteobacteria,2TWDP@28211|Alphaproteobacteria,2KGVC@204458|Caulobacterales	204458|Caulobacterales	NU	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_2,TPR_8
DYD3_k127_3623370_16	1161401.ASJA01000014_gene1042	6.017e-27	124.0	COG0457@1|root,COG0457@2|Bacteria,1MYIE@1224|Proteobacteria,2UAH0@28211|Alphaproteobacteria,43Y33@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_1,TPR_16,TPR_2,TPR_8
DYD3_k127_3623370_1	314254.OA2633_13965	2.73e-256	805.0	COG3104@1|root,COG3104@2|Bacteria,1MW6W@1224|Proteobacteria,2U15C@28211|Alphaproteobacteria,43X18@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG3104 Dipeptide tripeptide permease	-	-	-	ko:K03305	-	-	-	-	ko00000	2.A.17	-	-	PTR2
DYD3_k127_3623370_7	1161401.ASJA01000014_gene1044	1.675e-96	345.0	COG1629@1|root,COG4771@2|Bacteria,1R0WC@1224|Proteobacteria,2U1A6@28211|Alphaproteobacteria,43WF4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl_3,Plug,TonB_dep_Rec
DYD3_k127_3623370_6	1210884.HG799463_gene9659	1.214e-104	355.0	COG3505@1|root,COG3505@2|Bacteria,2J18Z@203682|Planctomycetes	203682|Planctomycetes	U	Type IV secretory system Conjugative DNA transfer	-	-	-	ko:K03205	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	T4SS-DNA_transf
DYD3_k127_3623370_20	204669.Acid345_2449	2.155e-09	69.0	COG3577@1|root,COG3577@2|Bacteria,3Y90B@57723|Acidobacteria,2JNTZ@204432|Acidobacteriia	204432|Acidobacteriia	S	Aspartyl protease	-	-	-	-	-	-	-	-	-	-	-	-	Asp_protease_2
DYD3_k127_3623370_3	1161401.ASJA01000014_gene1049	6.454e-201	635.0	COG3572@1|root,COG3572@2|Bacteria,1MU47@1224|Proteobacteria,2TRPT@28211|Alphaproteobacteria,43WEM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	glutamate--cysteine ligase	gshA	-	6.3.2.2	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00894,R10993	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000	-	-	-	GCS2
DYD3_k127_3623370_9	314254.OA2633_13950	4.116e-73	256.0	COG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,2TS0N@28211|Alphaproteobacteria,43W5T@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	rsmE	-	2.1.1.193	ko:K09761	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_RNA
DYD3_k127_3623370_19	1379270.AUXF01000001_gene2072	1.129e-17	88.0	COG0666@1|root,COG0666@2|Bacteria,1ZV4D@142182|Gemmatimonadetes	142182|Gemmatimonadetes	S	Ankyrin repeats (many copies)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3643486_6	929556.Solca_2759	6.037e-52	194.0	COG1472@1|root,COG1472@2|Bacteria,4NE90@976|Bacteroidetes,1IQ80@117747|Sphingobacteriia	976|Bacteroidetes	G	PFAM Glycosyl hydrolase family 3 C terminal domain	-	-	3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	-	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000	-	GH3	-	Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C,PA14
DYD3_k127_3643486_4	573065.Astex_1651	5.923e-59	207.0	COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,2TR6E@28211|Alphaproteobacteria,2KEZA@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	gapA	-	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
DYD3_k127_3643486_3	450851.PHZ_c3082	6.702e-60	230.0	COG0346@1|root,COG0346@2|Bacteria,1N116@1224|Proteobacteria,2UC5P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG0346 Lactoylglutathione lyase and related lyases	-	-	-	ko:K07032	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_3643486_0	1122613.ATUP01000001_gene1078	4.183e-163	522.0	COG0126@1|root,COG0126@2|Bacteria,1MUNU@1224|Proteobacteria,2TSKQ@28211|Alphaproteobacteria,43WXN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the phosphoglycerate kinase family	pgk	GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.2.3	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01512	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
DYD3_k127_3643486_8	555793.WSK_1442	6.99e-19	99.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3643486_1	1411123.JQNH01000001_gene2532	2.788e-152	487.0	COG3588@1|root,COG3588@2|Bacteria,1MVFK@1224|Proteobacteria,2TSIV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	fructose-bisphosphate aldolase	fbaB	-	4.1.2.13	ko:K01623	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147	-	-	-	Glycolytic
DYD3_k127_3643486_7	394221.Mmar10_0570	2.27e-22	110.0	COG3613@1|root,COG3613@2|Bacteria,1QZWH@1224|Proteobacteria	1224|Proteobacteria	F	nucleoside 2-deoxyribosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3643486_5	316278.SynRCC307_1505	3.321e-56	208.0	COG1876@1|root,COG3179@1|root,COG1876@2|Bacteria,COG3179@2|Bacteria,1G1SC@1117|Cyanobacteria,1H1Y4@1129|Synechococcus	1117|Cyanobacteria	M	PFAM Chitinase class I	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_19,PG_binding_1,Peptidase_M74,VanY
DYD3_k127_3643486_11	1183438.GKIL_4156	0.0001183	55.0	COG3474@1|root,COG3474@2|Bacteria	2|Bacteria	C	electron transfer activity	-	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Ank_2,Cytochrom_C
DYD3_k127_3643486_2	1120956.JHZK01000001_gene3344	8.983e-112	372.0	COG2041@1|root,COG2041@2|Bacteria,1MX9E@1224|Proteobacteria,2TRK0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	COG2041 Sulfite oxidase and related enzymes	-	-	1.8.3.1	ko:K00387	ko00920,ko01100,ko01120,map00920,map01100,map01120	-	R00533	RC00168	ko00000,ko00001,ko01000	-	-	-	Mo-co_dimer,Oxidored_molyb
DYD3_k127_3676004_1	573065.Astex_2599	3.819e-194	609.0	COG1251@1|root,COG1251@2|Bacteria,1MW58@1224|Proteobacteria,2TS8I@28211|Alphaproteobacteria,2KF65@204458|Caulobacterales	204458|Caulobacterales	C	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family	-	-	1.7.1.15	ko:K00362	ko00910,ko01120,map00910,map01120	M00530	R00787	RC00176	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,NIR_SIR,NIR_SIR_ferr,Pyr_redox_2
DYD3_k127_3676004_11	190650.CC_0616	2.23e-42	171.0	COG2146@1|root,COG2146@2|Bacteria,1N03R@1224|Proteobacteria,2UC33@28211|Alphaproteobacteria,2KGXC@204458|Caulobacterales	204458|Caulobacterales	P	Nitrite reductase NAD(P)H , small subunit	-	-	1.7.1.15	ko:K00363	ko00910,ko01120,map00910,map01120	M00530	R00787	RC00176	ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske
DYD3_k127_3676004_0	450851.PHZ_c0971	0.0	1109.0	COG0243@1|root,COG1251@1|root,COG0243@2|Bacteria,COG1251@2|Bacteria,1NS3T@1224|Proteobacteria,2TQYD@28211|Alphaproteobacteria,2KFWR@204458|Caulobacterales	204458|Caulobacterales	C	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family	-	-	-	ko:K00372	ko00910,ko01120,map00910,map01120	M00531	R00798,R01106	RC02812	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,Molybdop_Fe4S4,Molybdopterin,Molydop_binding
DYD3_k127_3676004_6	1282360.ABAC460_10505	1.023e-80	277.0	COG0007@1|root,COG0007@2|Bacteria,1NKY6@1224|Proteobacteria,2U9CG@28211|Alphaproteobacteria,2KHY2@204458|Caulobacterales	204458|Caulobacterales	H	Tetrapyrrole (Corrin/Porphyrin) Methylases	-	-	2.1.1.107	ko:K02303	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03194	RC00003,RC00871	ko00000,ko00001,ko00002,ko01000	-	-	-	TP_methylase
DYD3_k127_3676004_12	690585.JNNU01000008_gene3730	1.485e-31	135.0	COG0583@1|root,COG0583@2|Bacteria,1PGNH@1224|Proteobacteria,2V8FU@28211|Alphaproteobacteria,4BB5K@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_3676004_4	1211115.ALIQ01000202_gene539	2.006e-147	488.0	28HMZ@1|root,2Z7WD@2|Bacteria,1MU3Q@1224|Proteobacteria,2TSGX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3604)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3604
DYD3_k127_3676004_2	1282876.BAOK01000001_gene3321	1.977e-183	591.0	28HMZ@1|root,2Z7WD@2|Bacteria,1MU3Q@1224|Proteobacteria,2TSGX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3604)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3604
DYD3_k127_3676004_7	1282876.BAOK01000001_gene3323	1.61e-64	232.0	COG0760@1|root,COG0760@2|Bacteria,1R4ZR@1224|Proteobacteria,2U874@28211|Alphaproteobacteria,4BSQC@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	PPIC-type PPIASE domain	-	-	5.2.1.8	ko:K03769	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase_2
DYD3_k127_3676004_8	1121875.KB907547_gene3469	2.358e-62	228.0	COG2370@1|root,COG2370@2|Bacteria,4NHA6@976|Bacteroidetes,1I0A8@117743|Flavobacteriia	976|Bacteroidetes	O	HupE / UreJ protein	-	-	-	-	-	-	-	-	-	-	-	-	HupE_UreJ_2
DYD3_k127_3676004_5	627192.SLG_26390	8e-127	443.0	COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1QU0Y@1224|Proteobacteria,2TW5W@28211|Alphaproteobacteria,2KEBP@204457|Sphingomonadales	204457|Sphingomonadales	HP	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_3676004_10	565045.NOR51B_2369	4.034e-59	226.0	COG4257@1|root,COG4257@2|Bacteria	2|Bacteria	V	antibiotic catabolic process	-	-	-	-	-	-	-	-	-	-	-	-	DUF5011,Prenyltrans,SLH,Y_Y_Y,YkuD
DYD3_k127_3676004_14	522306.CAP2UW1_3613	3.37e-16	83.0	COG4654@1|root,COG4654@2|Bacteria,1N6UN@1224|Proteobacteria,2VW1Y@28216|Betaproteobacteria,1KR2U@119066|unclassified Betaproteobacteria	28216|Betaproteobacteria	C	Cytochrome c	-	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_3676004_13	627192.SLG_25060	6.93e-24	109.0	COG1309@1|root,COG1309@2|Bacteria,1RIG0@1224|Proteobacteria,2VFM1@28211|Alphaproteobacteria,2KA9F@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_3676004_9	633149.Bresu_2051	2.391e-61	224.0	COG2207@1|root,COG2207@2|Bacteria,1MXT9@1224|Proteobacteria,2U0UP@28211|Alphaproteobacteria,2KHXI@204458|Caulobacterales	204458|Caulobacterales	K	PFAM helix-turn-helix- domain containing protein AraC type	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
DYD3_k127_3676004_3	1379270.AUXF01000004_gene3191	4.144e-156	521.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt3,PSD2,PSD3,PSD4,PSD5
DYD3_k127_3676004_15	627192.SLG_31400	1.179e-15	84.0	COG2960@1|root,COG2960@2|Bacteria,1RGT9@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_3714344_2	159087.Daro_3706	1.698e-17	91.0	COG0352@1|root,COG0494@1|root,COG0352@2|Bacteria,COG0494@2|Bacteria,1RCZM@1224|Proteobacteria,2VHTP@28216|Betaproteobacteria,2KVDW@206389|Rhodocyclales	206389|Rhodocyclales	HL	Belongs to the Nudix hydrolase family	-	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX,TMP-TENI
DYD3_k127_3714344_5	1080067.BAZH01000004_gene4033	0.0002373	50.0	COG5487@1|root,COG5487@2|Bacteria,1NGAH@1224|Proteobacteria,1SGD7@1236|Gammaproteobacteria,3WYW6@544|Citrobacter	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1328)	ytjA	-	-	-	-	-	-	-	-	-	-	-	DUF1328
DYD3_k127_3714344_4	1123269.NX02_21660	7.547e-05	49.0	2AS1F@1|root,31HDU@2|Bacteria,1P7S9@1224|Proteobacteria,2UW28@28211|Alphaproteobacteria,2KBXC@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3714344_0	1131814.JAFO01000001_gene3315	0.0	3808.0	COG3459@1|root,COG3459@2|Bacteria,1MVNX@1224|Proteobacteria,2TSAJ@28211|Alphaproteobacteria,3EYBF@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase 36 superfamily, catalytic domain	ndvB	GO:0003674,GO:0003824,GO:0016740,GO:0016757	2.4.1.321	ko:K13688,ko:K18786	-	-	R10832	RC00397	ko00000,ko01000,ko01003	-	GH94,GT84	-	Glyco_hydro_36,Glyco_transf_36,Glycoamylase
DYD3_k127_3714344_1	1280944.HY17_10020	4e-38	147.0	COG0775@1|root,COG0775@2|Bacteria,1MY5S@1224|Proteobacteria,2TU7K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	phosphorylase	mtnN	-	3.2.2.9	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	M00034,M00609	R00194,R01401	RC00063,RC00318	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
DYD3_k127_38332_1	450851.PHZ_c1366	2.289e-187	589.0	COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2TR3C@28211|Alphaproteobacteria,2KF8E@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the PEP-utilizing enzyme family	ppdK	-	2.7.9.1	ko:K01006	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200	M00169,M00171,M00172,M00173	R00206	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PEP-utilizers_C,PPDK_N
DYD3_k127_38332_0	551275.KB899548_gene251	3.724e-267	841.0	COG0751@1|root,COG0751@2|Bacteria,1MV2F@1224|Proteobacteria,2TQKJ@28211|Alphaproteobacteria,43X2M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Glycyl-tRNA synthetase beta subunit	glyS	-	6.1.1.14	ko:K01879	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_1,tRNA_synt_2f
DYD3_k127_38332_4	1211115.ALIQ01000015_gene2285	2.656e-61	215.0	COG1764@1|root,COG1764@2|Bacteria,1RH9U@1224|Proteobacteria,2U768@28211|Alphaproteobacteria,3NBA9@45404|Beijerinckiaceae	28211|Alphaproteobacteria	O	OsmC-like protein	osmC	-	-	ko:K04063	-	-	-	-	ko00000	-	-	-	OsmC
DYD3_k127_38332_3	1479238.JQMZ01000001_gene1440	9.574e-69	239.0	COG0625@1|root,COG0625@2|Bacteria,1RA05@1224|Proteobacteria,2TS58@28211|Alphaproteobacteria,43Y44@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
DYD3_k127_38332_5	1267534.KB906759_gene1899	1.768e-22	110.0	2E4GE@1|root,32ZBK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_38332_2	1123503.KB908058_gene795	1.624e-161	511.0	COG0752@1|root,COG0752@2|Bacteria,1MVCJ@1224|Proteobacteria,2TS2N@28211|Alphaproteobacteria,2KFIR@204458|Caulobacterales	204458|Caulobacterales	J	glycyl-tRNA synthetase alpha subunit	glyQ	-	6.1.1.14	ko:K01878	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_2e
DYD3_k127_3839901_1	551789.ATVJ01000003_gene272	1.05e-28	121.0	COG3334@1|root,COG3334@2|Bacteria,1RKF6@1224|Proteobacteria,2TRR1@28211|Alphaproteobacteria,43YP5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	PFAM MgtE intracellular	MA20_08460	-	-	-	-	-	-	-	-	-	-	-	MgtE_N
DYD3_k127_3839901_0	1161401.ASJA01000004_gene2336	1.292e-219	726.0	COG0457@1|root,COG0457@2|Bacteria,1N09H@1224|Proteobacteria,2TSKT@28211|Alphaproteobacteria,43X9V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3840216_15	1123059.KB823012_gene2116	7.512e-09	61.0	COG0702@1|root,COG0702@2|Bacteria,1MW54@1224|Proteobacteria,2TQMD@28211|Alphaproteobacteria,43W5E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	GM	NADH-quinone oxidoreductase	MA20_24380	-	1.6.5.3,1.6.99.3	ko:K00329,ko:K00356	ko00190,map00190	-	R11945	RC00061	ko00000,ko00001,ko01000	-	-	-	3Beta_HSD,Epimerase,NAD_binding_10,RmlD_sub_bind
DYD3_k127_3840216_1	399739.Pmen_0465	2.484e-124	409.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,1RNGN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	G	glucose sorbosone	yliI	-	-	ko:K21430	-	-	-	-	ko00000,ko01000	-	-	-	GSDH
DYD3_k127_3840216_14	1247963.JPHU01000010_gene2239	1.14e-11	72.0	2E7GN@1|root,33F56@2|Bacteria,1NK0G@1224|Proteobacteria,2UKYE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3840216_4	1479238.JQMZ01000001_gene693	7.186e-96	321.0	COG0349@1|root,COG0349@2|Bacteria,1MWFD@1224|Proteobacteria,2TQXS@28211|Alphaproteobacteria,43WZZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	exonuclease	rnd1	-	3.1.13.5	ko:K03684	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DNA_pol_A_exo1
DYD3_k127_3840216_9	394221.Mmar10_0108	5.631e-31	138.0	COG5375@1|root,COG5375@2|Bacteria,1N7GD@1224|Proteobacteria,2UF6A@28211|Alphaproteobacteria,43Y1H@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	ko:K11719	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	LptC
DYD3_k127_3840216_12	450851.PHZ_c0173	1.154e-16	93.0	COG1934@1|root,COG1934@2|Bacteria,1MXGA@1224|Proteobacteria,2U6DD@28211|Alphaproteobacteria,2KH0K@204458|Caulobacterales	204458|Caulobacterales	S	OstA-like protein	-	-	-	ko:K09774	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	OstA
DYD3_k127_3840216_10	551789.ATVJ01000003_gene66	3.805e-22	104.0	COG1934@1|root,COG1934@2|Bacteria,1MXGA@1224|Proteobacteria,2U6DD@28211|Alphaproteobacteria,43Y8I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	lptA	-	-	ko:K09774	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	OstA
DYD3_k127_3840216_2	1123503.KB908056_gene2166	2.105e-109	372.0	COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,2TR7F@28211|Alphaproteobacteria,2KFFX@204458|Caulobacterales	204458|Caulobacterales	S	ABC transporter	-	-	-	ko:K06861	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	1.B.42.1	-	-	ABC_tran,BCA_ABC_TP_C
DYD3_k127_3840216_0	1161401.ASJA01000002_gene2594	4.7e-176	578.0	COG1508@1|root,COG1508@2|Bacteria,1MW4V@1224|Proteobacteria,2TS41@28211|Alphaproteobacteria,43WFG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	rpoN	-	-	ko:K03092	ko02020,ko05111,map02020,map05111	-	-	-	ko00000,ko00001,ko03021	-	-	-	Sigma54_AID,Sigma54_CBD,Sigma54_DBD
DYD3_k127_3840216_5	394221.Mmar10_0104	6.827e-60	214.0	COG1544@1|root,COG1544@2|Bacteria,1MZHW@1224|Proteobacteria,2TV3J@28211|Alphaproteobacteria,43Y2N@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase	hpf	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113	-	ko:K05808	-	-	-	-	ko00000,ko03009	-	-	-	Ribosom_S30AE_C,Ribosomal_S30AE
DYD3_k127_3840216_7	1110502.TMO_0175	9.436e-48	178.0	COG1762@1|root,COG1762@2|Bacteria,1RD0E@1224|Proteobacteria,2U7B0@28211|Alphaproteobacteria,2JS6Q@204441|Rhodospirillales	204441|Rhodospirillales	GT	COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type)	ptsN	-	-	ko:K02806	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	PTS_EIIA_2
DYD3_k127_3840216_11	1449049.JONW01000005_gene1963	2.05e-17	84.0	COG5568@1|root,COG5568@2|Bacteria	2|Bacteria	S	Protein of unknown function (DUF1150)	MA20_24245	-	-	-	-	-	-	-	-	-	-	-	DUF1150
DYD3_k127_3840216_8	1121123.AUAO01000001_gene1238	2.362e-43	162.0	COG0071@1|root,COG0071@2|Bacteria,1R9Y1@1224|Proteobacteria,2UA1J@28211|Alphaproteobacteria,2KGJ1@204458|Caulobacterales	204458|Caulobacterales	O	Belongs to the small heat shock protein (HSP20) family	-	-	-	-	-	-	-	-	-	-	-	-	HSP20
DYD3_k127_3840216_3	366602.Caul_3324	7.371e-97	325.0	COG1305@1|root,COG1305@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	transglutaminase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_3840216_13	1382303.JPOM01000001_gene2291	3.214e-12	78.0	COG4530@1|root,COG4530@2|Bacteria,1MZMM@1224|Proteobacteria,2V53M@28211|Alphaproteobacteria,2KH09@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (FYDLN_acid)	-	-	-	-	-	-	-	-	-	-	-	-	FYDLN_acid
DYD3_k127_3840216_6	438753.AZC_3931	7.56e-48	177.0	COG0128@1|root,COG0128@2|Bacteria,1MWMK@1224|Proteobacteria,2TR6W@28211|Alphaproteobacteria,3EY3V@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	aroA	GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576	2.5.1.19	ko:K00800	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03460	RC00350	ko00000,ko00001,ko00002,ko01000	-	-	-	EPSP_synthase
DYD3_k127_3897166_0	1502850.FG91_02378	4.347e-153	492.0	COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,2TRU4@28211|Alphaproteobacteria,2K1AP@204457|Sphingomonadales	204457|Sphingomonadales	O	Peptidase family M13	-	-	-	ko:K07386	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M13,Peptidase_M13_N
DYD3_k127_3897166_2	450851.PHZ_c0277	2.662e-86	290.0	COG0521@1|root,COG0521@2|Bacteria,1R9W2@1224|Proteobacteria,2TTA8@28211|Alphaproteobacteria,2KG9Q@204458|Caulobacterales	204458|Caulobacterales	H	May be involved in the biosynthesis of molybdopterin	-	-	2.7.7.75	ko:K03638	ko00790,ko01100,map00790,map01100	-	R09726	RC00002	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth
DYD3_k127_3897166_7	555793.WSK_1442	4.883e-14	85.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3897166_3	1230476.C207_03454	7.842e-74	257.0	COG0596@1|root,COG0596@2|Bacteria,1R3U1@1224|Proteobacteria,2TVFV@28211|Alphaproteobacteria,3JQPU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_01735	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_3897166_4	1096546.WYO_3407	6.042e-62	222.0	COG3271@1|root,COG3271@2|Bacteria,1R6YT@1224|Proteobacteria,2U59R@28211|Alphaproteobacteria,1JY4U@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Phytochelatin synthase	-	-	-	-	-	-	-	-	-	-	-	-	Phytochelatin
DYD3_k127_3897166_6	509190.Cseg_3505	6.164e-20	98.0	COG0784@1|root,COG0784@2|Bacteria,1N70P@1224|Proteobacteria,2UF5P@28211|Alphaproteobacteria,2KH28@204458|Caulobacterales	204458|Caulobacterales	T	Response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_3897166_1	595536.ADVE02000001_gene1231	3.092e-140	468.0	COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,36XKW@31993|Methylocystaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	CHASE3,GAF_2,HATPase_c,HisKA,PAS,PAS_4,PAS_9,Response_reg
DYD3_k127_3897166_5	247639.MGP2080_07092	2.283e-59	213.0	2F1PW@1|root,33UQ6@2|Bacteria,1RHX8@1224|Proteobacteria,1SPAN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3951775_1	215803.DB30_0576	6.081e-296	924.0	COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,42MUY@68525|delta/epsilon subdivisions,2X6WF@28221|Deltaproteobacteria,2YWNJ@29|Myxococcales	28221|Deltaproteobacteria	E	Peptidase family M3	dcp	-	3.4.15.5	ko:K01284	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M3
DYD3_k127_3951775_7	640081.Dsui_2815	4.205e-55	202.0	COG0431@1|root,COG0431@2|Bacteria,1RAFI@1224|Proteobacteria,2VKQS@28216|Betaproteobacteria,2KWSD@206389|Rhodocyclales	206389|Rhodocyclales	S	Flavodoxin-like fold	-	-	-	ko:K19784	-	-	-	-	ko00000	-	-	-	FMN_red
DYD3_k127_3951775_13	1123503.KB908057_gene2448	0.0009359	48.0	2CJDM@1|root,32Z3W@2|Bacteria,1N7ZP@1224|Proteobacteria,2UF79@28211|Alphaproteobacteria,2KHDB@204458|Caulobacterales	204458|Caulobacterales	S	Glycine-zipper domain	-	-	-	-	-	-	-	-	-	-	-	-	Gly-zipper_YMGG
DYD3_k127_3951775_9	1120956.JHZK01000031_gene172	1.93e-47	186.0	COG1238@1|root,COG1238@2|Bacteria,1MWED@1224|Proteobacteria,2U78A@28211|Alphaproteobacteria,1JNUY@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	SNARE associated Golgi protein	dedA	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD3_k127_3951775_10	1121949.AQXT01000002_gene2641	1.217e-31	141.0	COG1495@1|root,COG1495@2|Bacteria,1N89I@1224|Proteobacteria,2UE1Z@28211|Alphaproteobacteria,43Y9Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG1495 Disulfide bond formation protein DsbB	-	-	-	-	-	-	-	-	-	-	-	-	DsbB
DYD3_k127_3951775_4	1123059.KB823011_gene790	2.733e-68	237.0	COG2941@1|root,COG2941@2|Bacteria,1RAK4@1224|Proteobacteria,2U85I@28211|Alphaproteobacteria,43XJM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol	coq7	-	-	ko:K06134	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00128	R04984,R08775	RC01254	ko00000,ko00001,ko00002,ko01000	-	-	-	COQ7
DYD3_k127_3951775_8	582899.Hden_0883	2.161e-49	199.0	COG1075@1|root,COG1075@2|Bacteria,1P1TP@1224|Proteobacteria,2UVK2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3951775_6	1380355.JNIJ01000019_gene4601	7.885e-58	220.0	COG2270@1|root,COG2270@2|Bacteria,1MWXB@1224|Proteobacteria,2TSCV@28211|Alphaproteobacteria,3JSCP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Major facilitator superfamily	MA20_25070	-	-	ko:K06902	ko04138,map04138	-	-	-	ko00000,ko00001,ko02000,ko04131	2.A.1.24,9.A.15.1	-	-	ATG22
DYD3_k127_3951775_2	190650.CC_0857	1.733e-189	616.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,2KG2E@204458|Caulobacterales	204458|Caulobacterales	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	CHASE4,EAL,GGDEF
DYD3_k127_3951775_3	1382303.JPOM01000001_gene615	3.297e-93	308.0	COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,2TR3M@28211|Alphaproteobacteria,2KFD1@204458|Caulobacterales	204458|Caulobacterales	L	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	HNH_5
DYD3_k127_3951775_5	1122613.ATUP01000001_gene698	5.206e-58	207.0	COG3727@1|root,COG3727@2|Bacteria,1RH1C@1224|Proteobacteria,2UA6G@28211|Alphaproteobacteria,43ZW3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA mismatch endonuclease Vsr	-	-	-	ko:K07458	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	Vsr
DYD3_k127_3951775_11	1280944.HY17_15095	2.315e-10	70.0	29WUF@1|root,30IFW@2|Bacteria,1QXH9@1224|Proteobacteria,2TXAR@28211|Alphaproteobacteria,43YVX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3951775_0	1122613.ATUP01000001_gene702	9.453e-313	972.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TS8E@28211|Alphaproteobacteria,43WMG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	3-hydroxyacyl-CoA dehydrogenase	fadJ	-	1.1.1.35,4.2.1.17,5.1.2.3	ko:K01782	ko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212	M00032,M00087	R01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094	RC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
DYD3_k127_3979938_3	1346791.M529_09550	2.534e-127	417.0	COG0508@1|root,COG0508@2|Bacteria,1MUJD@1224|Proteobacteria,2TS5N@28211|Alphaproteobacteria,2K18R@204457|Sphingomonadales	204457|Sphingomonadales	C	The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2)	sucB	-	2.3.1.61	ko:K00658	ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R02570,R02571,R08549	RC00004,RC02727,RC02833	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl,E3_binding
DYD3_k127_3979938_0	1161401.ASJA01000021_gene657	0.0	1471.0	COG0567@1|root,COG0567@2|Bacteria,1MVBF@1224|Proteobacteria,2TRBQ@28211|Alphaproteobacteria,43WQP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate	sucA	-	1.2.4.2	ko:K00164	ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R00621,R01933,R01940,R03316,R08549	RC00004,RC00027,RC00627,RC02743,RC02833,RC02883	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
DYD3_k127_3979938_2	1122963.AUHB01000007_gene3664	3.005e-139	447.0	COG0074@1|root,COG0074@2|Bacteria,1MUGA@1224|Proteobacteria,2TQKB@28211|Alphaproteobacteria,36XM3@31993|Methylocystaceae	28211|Alphaproteobacteria	C	CoA binding domain	sucD	-	6.2.1.5	ko:K01902	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_binding,Ligase_CoA
DYD3_k127_3979938_4	648757.Rvan_0649	9.384e-37	145.0	COG5573@1|root,COG5573@2|Bacteria,1N454@1224|Proteobacteria,2UDGY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_3979938_1	1411123.JQNH01000001_gene102	1.056e-149	477.0	COG0045@1|root,COG0045@2|Bacteria,1MVCE@1224|Proteobacteria,2TRXK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	sucC	GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,Ligase_CoA
DYD3_k127_400637_7	1210884.HG799464_gene10731	1.778e-34	136.0	COG0640@1|root,COG0640@2|Bacteria,2IZUJ@203682|Planctomycetes	203682|Planctomycetes	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_5
DYD3_k127_400637_5	379066.GAU_3468	7.819e-58	211.0	COG3832@1|root,COG3832@2|Bacteria	2|Bacteria	J	glyoxalase III activity	-	-	-	ko:K02005	-	-	-	-	ko00000	-	-	-	AHSA1
DYD3_k127_400637_6	1280953.HOC_20051	1.726e-42	160.0	COG4679@1|root,COG4679@2|Bacteria,1QMSB@1224|Proteobacteria,2UE5S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Phage derived protein Gp49-like (DUF891)	-	-	-	-	-	-	-	-	-	-	-	-	Gp49
DYD3_k127_400637_8	1280953.HOC_20046	4.512e-24	110.0	COG3093@1|root,COG3093@2|Bacteria,1NA48@1224|Proteobacteria,2UGHZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_37
DYD3_k127_400637_4	316055.RPE_2126	1.422e-95	316.0	COG3177@1|root,COG3177@2|Bacteria,1RF10@1224|Proteobacteria,2U92F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Filamentation induced by cAMP protein fic	-	-	-	-	-	-	-	-	-	-	-	-	Fic
DYD3_k127_400637_9	1038866.KB902823_gene3578	1.333e-15	86.0	2AGSM@1|root,3170I@2|Bacteria,1NIUF@1224|Proteobacteria,2UNAF@28211|Alphaproteobacteria,3K5QM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_400637_0	1122939.ATUD01000007_gene2122	7.78e-166	537.0	COG1012@1|root,COG1012@2|Bacteria,2GIWZ@201174|Actinobacteria,4CPKM@84995|Rubrobacteria	84995|Rubrobacteria	C	Belongs to the aldehyde dehydrogenase family	-	-	1.2.1.39,1.2.1.99	ko:K00146,ko:K09472	ko00330,ko00360,ko00643,ko01100,ko01120,map00330,map00360,map00643,map01100,map01120	M00136	R02536,R07417,R07418	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_400637_3	653045.Strvi_4587	4.377e-127	419.0	COG1902@1|root,COG1902@2|Bacteria,2GK8E@201174|Actinobacteria	201174|Actinobacteria	C	NADH flavin oxidoreductase NADH oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_FMN
DYD3_k127_400637_10	1415754.JQMK01000012_gene936	8.873e-15	79.0	2CK8Q@1|root,31PVK@2|Bacteria,1RIRH@1224|Proteobacteria,1SD2E@1236|Gammaproteobacteria,46BVI@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_400637_2	1437824.BN940_08606	4.904e-146	480.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2VI09@28216|Betaproteobacteria,3T1ES@506|Alcaligenaceae	28216|Betaproteobacteria	C	FAD linked oxidases, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_400637_1	1038866.KB902813_gene2034	1.083e-148	492.0	COG1520@1|root,COG2010@1|root,COG1520@2|Bacteria,COG2010@2|Bacteria,1PIDE@1224|Proteobacteria,2TTS3@28211|Alphaproteobacteria,3JVPI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	PQQ-like domain	-	-	1.1.2.6	ko:K05889	-	-	R03136	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_400637_11	1296990.H845_758	1.375e-07	53.0	COG3293@1|root,COG3293@2|Bacteria,1REEB@1224|Proteobacteria,2U74J@28211|Alphaproteobacteria,2JYDD@204441|Rhodospirillales	204441|Rhodospirillales	L	Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_2
DYD3_k127_4024461_1	1523503.JPMY01000046_gene1375	3.159e-11	75.0	COG3239@1|root,COG3239@2|Bacteria,1MUHK@1224|Proteobacteria,1RYA7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	fatty acid desaturase	-	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase
DYD3_k127_4024461_0	1121948.AUAC01000003_gene2545	7.353e-89	301.0	COG0006@1|root,COG0006@2|Bacteria,1MUZS@1224|Proteobacteria,2TQXN@28211|Alphaproteobacteria,43WNB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Aminopeptidase	pepP	-	3.4.11.9	ko:K01262	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Creatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C
DYD3_k127_4025889_0	1123059.KB823012_gene2348	5.168e-54	198.0	COG0632@1|root,COG0632@2|Bacteria,1MWJR@1224|Proteobacteria,2TSKM@28211|Alphaproteobacteria,43XXM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	ruvA	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03550	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HHH_5,RuvA_C,RuvA_N
DYD3_k127_4025889_1	394221.Mmar10_2424	4.042e-51	188.0	COG0817@1|root,COG0817@2|Bacteria,1MUJI@1224|Proteobacteria,2U70Z@28211|Alphaproteobacteria,43XZ2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	ruvC	GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576	3.1.22.4	ko:K01159	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvC
DYD3_k127_4025889_3	1219049.SP5_101_00140	1.533e-11	72.0	2AKNZ@1|root,31BFK@2|Bacteria,1Q7AC@1224|Proteobacteria,2VDEV@28211|Alphaproteobacteria,2K564@204457|Sphingomonadales	204457|Sphingomonadales	S	EF hand	-	-	-	-	-	-	-	-	-	-	-	-	EF-hand_5
DYD3_k127_4025889_2	551275.KB899547_gene508	3.831e-15	83.0	290UJ@1|root,2ZNGJ@2|Bacteria,1RBSP@1224|Proteobacteria,2UIQD@28211|Alphaproteobacteria,43Y3Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4089174_32	1280954.HPO_08079	9.161e-91	304.0	COG1335@1|root,COG1335@2|Bacteria,1MV0W@1224|Proteobacteria,2TUVZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2	-	-	3.5.1.110	ko:K09020	ko00240,ko01100,map00240,map01100	-	R09947,R09980	RC02737,RC02738	ko00000,ko00001,ko01000	-	-	-	Glyoxalase,Isochorismatase
DYD3_k127_4089174_3	1280954.HPO_08074	1.786e-242	755.0	COG0624@1|root,COG0624@2|Bacteria,1MV5P@1224|Proteobacteria,2U0Z8@28211|Alphaproteobacteria,43ZHF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4089174_39	228405.HNE_1255	1.908e-58	207.0	COG1853@1|root,COG1853@2|Bacteria,1RGYM@1224|Proteobacteria,2UCHI@28211|Alphaproteobacteria,440B4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
DYD3_k127_4089174_20	1280954.HPO_08064	3.431e-139	463.0	COG0477@1|root,COG2814@2|Bacteria,1QTX0@1224|Proteobacteria,2TX00@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EGP	Major facilitator superfamily	-	-	-	ko:K08217	-	-	-	-	br01600,ko00000,ko01504,ko02000	2.A.1.21.1,2.A.1.21.22	-	-	MFS_1,MFS_3
DYD3_k127_4089174_36	582402.Hbal_2546	3.931e-77	263.0	COG0778@1|root,COG0778@2|Bacteria,1R9VX@1224|Proteobacteria,2U5B0@28211|Alphaproteobacteria,43XGR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NADH dehydrogenase NAD(P)H nitroreductase	rutE	-	-	ko:K09019	ko00240,ko01100,map00240,map01100	-	R09289	RC00087	ko00000,ko00001,ko01000	-	-	-	Nitroreductase
DYD3_k127_4089174_15	1280954.HPO_08059	3.558e-159	514.0	COG2807@1|root,COG2807@2|Bacteria,1NS7T@1224|Proteobacteria,2U191@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	PFAM Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_4089174_11	228405.HNE_1252	3.309e-187	590.0	COG2141@1|root,COG2141@2|Bacteria,1MXZH@1224|Proteobacteria,2U4PT@28211|Alphaproteobacteria,43Z6I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	1.14.99.46	ko:K09018	ko00240,ko01100,map00240,map01100	-	R09936	RC02732	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
DYD3_k127_4089174_6	228405.HNE_1251	3.375e-209	660.0	COG0624@1|root,COG0624@2|Bacteria,1MW2W@1224|Proteobacteria,2U0TZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Peptidase family M20/M25/M40	-	-	3.5.1.16	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R00669,R09107	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_4089174_16	69395.JQLZ01000003_gene393	1.072e-157	516.0	COG1073@1|root,COG1073@2|Bacteria	2|Bacteria	S	thiolester hydrolase activity	-	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	Hydrolase_4,Peptidase_S15
DYD3_k127_4089174_14	59538.XP_005981421.1	8.917e-163	519.0	COG0579@1|root,KOG2665@2759|Eukaryota,397NY@33154|Opisthokonta,3BCE7@33208|Metazoa,3CXG5@33213|Bilateria,48AID@7711|Chordata,490X2@7742|Vertebrata,3JCWX@40674|Mammalia,4J11X@91561|Cetartiodactyla	33208|Metazoa	S	L-2-hydroxyglutarate dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_4089174_30	1198452.Jab_2c05110	1.483e-99	339.0	COG4774@1|root,COG4774@2|Bacteria,1NMCN@1224|Proteobacteria,2WGP8@28216|Betaproteobacteria,473K2@75682|Oxalobacteraceae	28216|Betaproteobacteria	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_4089174_33	1129794.C427_4395	2.523e-89	311.0	COG4774@1|root,COG4774@2|Bacteria,1NMCN@1224|Proteobacteria,1S0Q6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_4089174_38	1094184.KWO_0119915	2.8e-67	243.0	COG2207@1|root,COG2207@2|Bacteria,1MXT9@1224|Proteobacteria,1SYHU@1236|Gammaproteobacteria,1X86Y@135614|Xanthomonadales	135614|Xanthomonadales	K	AraC-binding-like domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
DYD3_k127_4089174_9	1161401.ASJA01000016_gene1345	8.677e-195	619.0	COG0554@1|root,COG0554@2|Bacteria,1MUP7@1224|Proteobacteria,2TRD7@28211|Alphaproteobacteria,43X0T@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	glpK	GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615	2.7.1.30	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	-	R00847	RC00002,RC00017	ko00000,ko00001,ko01000,ko04147	-	-	-	FGGY_C,FGGY_N
DYD3_k127_4089174_1	1123247.AUIJ01000001_gene1616	9.729e-304	945.0	COG1653@1|root,COG1653@2|Bacteria,1MV8A@1224|Proteobacteria,2TTPV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	COG1653 ABC-type sugar transport system, periplasmic component	MA20_44770	-	-	ko:K17321	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	SBP_bac_1,SBP_bac_8
DYD3_k127_4089174_46	1122135.KB893134_gene3335	2.685e-21	106.0	COG5477@1|root,COG5477@2|Bacteria,1N7WT@1224|Proteobacteria,2UBTZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	small integral membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2160
DYD3_k127_4089174_18	631454.N177_3436	2.32e-148	472.0	COG0395@1|root,COG0395@2|Bacteria,1PGFK@1224|Proteobacteria,2V877@28211|Alphaproteobacteria,1JPGT@119043|Rhodobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1
DYD3_k127_4089174_21	936136.ARRT01000003_gene6211	7.208e-136	437.0	COG1175@1|root,COG1175@2|Bacteria,1MVAZ@1224|Proteobacteria,2TRWF@28211|Alphaproteobacteria,4B754@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	ABC-type sugar transport systems, permease components	MA20_44785	-	-	ko:K17322	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	BPD_transp_1
DYD3_k127_4089174_23	698761.RTCIAT899_CH17720	3.177e-128	432.0	COG3839@1|root,COG3839@2|Bacteria,1MU7W@1224|Proteobacteria,2TQNF@28211|Alphaproteobacteria,4B77H@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the ABC transporter superfamily	MA20_44790	-	-	ko:K17325	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	ABC_tran,TOBE_2
DYD3_k127_4089174_26	1370122.JHXQ01000008_gene1776	1.226e-119	395.0	COG3839@1|root,COG3839@2|Bacteria,1MX8G@1224|Proteobacteria,2TSXF@28211|Alphaproteobacteria,4B7DF@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	glpS	-	-	ko:K17324	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	ABC_tran,TOBE,TOBE_2
DYD3_k127_4089174_13	1380393.JHVP01000004_gene516	1.748e-168	545.0	28JDP@1|root,2Z97Z@2|Bacteria,2I9EC@201174|Actinobacteria,4EVDB@85013|Frankiales	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4089174_49	1041139.KB902691_gene850	9.8e-07	55.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,4B9B4@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	Maleylacetoacetate isomerase	maiA	GO:0003674,GO:0003824,GO:0004364,GO:0004601,GO:0004602,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006140,GO:0006518,GO:0006520,GO:0006558,GO:0006559,GO:0006575,GO:0006725,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009636,GO:0009889,GO:0009987,GO:0010510,GO:0010565,GO:0016034,GO:0016054,GO:0016209,GO:0016491,GO:0016684,GO:0016740,GO:0016765,GO:0016787,GO:0016824,GO:0016853,GO:0016859,GO:0017144,GO:0019120,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019752,GO:0030808,GO:0031323,GO:0031326,GO:0031974,GO:0034248,GO:0034641,GO:0042221,GO:0042737,GO:0042762,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046983,GO:0050789,GO:0050794,GO:0050812,GO:0050896,GO:0051171,GO:0051174,GO:0051186,GO:0051193,GO:0051196,GO:0051716,GO:0055114,GO:0062012,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0080090,GO:0097237,GO:0098754,GO:0098869,GO:1900371,GO:1900542,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901685,GO:1901687,GO:1902221,GO:1902222,GO:1990748	5.2.1.2,5.2.1.4	ko:K01800,ko:K01801	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R03181,R03868	RC00867	ko00000,ko00001,ko00002,ko01000	-	-	-	GST_C_2,GST_C_3,GST_N,GST_N_3
DYD3_k127_4089174_37	983920.Y88_3563	5.331e-72	255.0	COG2755@1|root,COG2755@2|Bacteria,1RE9P@1224|Proteobacteria,2UAVV@28211|Alphaproteobacteria,2KDSE@204457|Sphingomonadales	204457|Sphingomonadales	E	GDSL-like Lipase/Acylhydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
DYD3_k127_4089174_29	1280947.HY30_13900	3.039e-101	339.0	COG1940@1|root,COG1940@2|Bacteria,1R7YN@1224|Proteobacteria,2TUWX@28211|Alphaproteobacteria,43XPX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	GK	ROK family	-	-	2.7.1.4	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	-	R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	ROK
DYD3_k127_4089174_12	1207058.L53_09710	6.218e-174	559.0	COG0738@1|root,COG0738@2|Bacteria,1Q64C@1224|Proteobacteria,2U3MJ@28211|Alphaproteobacteria,43Z6P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_4089174_28	1280954.HPO_05917	1.609e-106	357.0	28NZW@1|root,2ZBWM@2|Bacteria,1RCV2@1224|Proteobacteria,2V5RU@28211|Alphaproteobacteria,43Z9D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4089174_17	509190.Cseg_0473	3.856e-150	484.0	COG0657@1|root,COG0657@2|Bacteria,1RD8A@1224|Proteobacteria,2U0DE@28211|Alphaproteobacteria,2KH92@204458|Caulobacterales	204458|Caulobacterales	I	alpha/beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
DYD3_k127_4089174_10	1280946.HY29_12015	1.29e-189	602.0	COG3356@1|root,COG3356@2|Bacteria,1RJI0@1224|Proteobacteria,2UHQT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PFAM Neutral alkaline nonlysosomal ceramidase	-	-	-	-	-	-	-	-	-	-	-	-	Ceramidase_alk
DYD3_k127_4089174_22	1280947.HY30_13875	5.022e-129	437.0	COG2755@1|root,COG2755@2|Bacteria,1MXBN@1224|Proteobacteria,2U079@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG2755 Lysophospholipase L1 and related esterases	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
DYD3_k127_4089174_0	1280954.HPO_05947	0.0	1066.0	COG4773@1|root,COG4773@2|Bacteria	2|Bacteria	P	Receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_4089174_24	1280948.HY36_05100	1.613e-127	416.0	COG1609@1|root,COG1609@2|Bacteria,1MW7E@1224|Proteobacteria,2TVGC@28211|Alphaproteobacteria,43Z5I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	helix_turn _helix lactose operon repressor	-	-	-	ko:K02529	-	-	-	-	ko00000,ko03000	-	-	-	LacI,Peripla_BP_3
DYD3_k127_4089174_27	702113.PP1Y_Mpl246	1.512e-116	416.0	COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1QU0Y@1224|Proteobacteria	1224|Proteobacteria	HP	Outer membrane receptor proteins mostly Fe transport	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_4089174_25	573065.Astex_3318	1.674e-125	412.0	COG0627@1|root,COG0627@2|Bacteria,1QIRQ@1224|Proteobacteria,2U23Q@28211|Alphaproteobacteria,2KHJT@204458|Caulobacterales	204458|Caulobacterales	S	esterase	-	-	-	-	-	-	-	-	-	-	-	-	Esterase
DYD3_k127_4089174_4	1280953.HOC_18524	1.129e-221	701.0	COG2272@1|root,COG2272@2|Bacteria,1MVQZ@1224|Proteobacteria,2TTHT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Belongs to the type-B carboxylesterase lipase family	-	-	-	ko:K03929	-	-	-	-	ko00000,ko01000	-	CE10	-	COesterase
DYD3_k127_4089174_34	661478.OP10G_0311	7.57e-89	305.0	COG2382@1|root,COG2382@2|Bacteria	2|Bacteria	P	enterobactin catabolic process	-	-	-	-	-	-	-	-	-	-	-	-	Esterase
DYD3_k127_4089174_42	194867.ALBQ01000044_gene1445	8.151e-51	189.0	2DMP1@1|root,32SS8@2|Bacteria,1N6W6@1224|Proteobacteria,2UB7H@28211|Alphaproteobacteria,2K674@204457|Sphingomonadales	204457|Sphingomonadales	S	Protein of unknown function (DUF3237)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3237
DYD3_k127_4089174_50	574966.KB898653_gene1371	0.0001175	47.0	COG0654@1|root,COG0654@2|Bacteria,1MV8T@1224|Proteobacteria,1RMD7@1236|Gammaproteobacteria,1XITT@135619|Oceanospirillales	135619|Oceanospirillales	CH	PFAM monooxygenase FAD-binding	-	-	1.14.13.2	ko:K00481	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R01298	RC00046	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
DYD3_k127_4089174_2	702113.PP1Y_AT13220	2.214e-280	890.0	COG4774@1|root,COG4774@2|Bacteria,1NMCN@1224|Proteobacteria,2U44P@28211|Alphaproteobacteria,2KEAA@204457|Sphingomonadales	204457|Sphingomonadales	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_4089174_43	69395.JQLZ01000007_gene1704	2.26e-27	117.0	COG1846@1|root,COG1846@2|Bacteria,1N5PV@1224|Proteobacteria,2UE9H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_4089174_8	627192.SLG_28700	8.353e-200	627.0	COG2141@1|root,COG2141@2|Bacteria,1R7GC@1224|Proteobacteria,2U0DW@28211|Alphaproteobacteria,2K2TE@204457|Sphingomonadales	204457|Sphingomonadales	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
DYD3_k127_4089174_31	627192.SLG_28720	1.31e-95	320.0	28JPA@1|root,2Z9FC@2|Bacteria,1PN1F@1224|Proteobacteria,2TSKX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4089174_48	1403819.BATR01000054_gene1681	1.109e-11	72.0	COG1917@1|root,COG1917@2|Bacteria	2|Bacteria	L	Cupin 2, conserved barrel domain protein	-	-	-	ko:K11312	-	-	-	-	ko00000	-	-	-	Cupin_2,Cupin_3
DYD3_k127_4089174_40	196490.AUEZ01000013_gene4733	9.309e-58	209.0	COG0596@1|root,COG0596@2|Bacteria,1R3U1@1224|Proteobacteria,2TVFV@28211|Alphaproteobacteria,3JQPU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_4089174_35	1282876.BAOK01000002_gene279	2.225e-85	300.0	COG2270@1|root,COG2270@2|Bacteria,1MWXB@1224|Proteobacteria,2TSCV@28211|Alphaproteobacteria,4BPRY@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Vacuole effluxer Atg22 like	MA20_25070	-	-	ko:K06902	ko04138,map04138	-	-	-	ko00000,ko00001,ko02000,ko04131	2.A.1.24,9.A.15.1	-	-	ATG22
DYD3_k127_4089174_44	627192.SLG_28600	1.778e-23	110.0	COG1309@1|root,COG1309@2|Bacteria,1N7FT@1224|Proteobacteria,2UGYG@28211|Alphaproteobacteria,2K7K8@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_4089174_7	1267535.KB906767_gene1178	2.068e-206	666.0	28JZZ@1|root,2Z9PZ@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4089174_41	1380355.JNIJ01000068_gene5658	1.307e-56	214.0	COG1262@1|root,COG1262@2|Bacteria,1NQ5K@1224|Proteobacteria,2U2VJ@28211|Alphaproteobacteria,3JTPW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase,TIR_2
DYD3_k127_4089174_5	1382303.JPOM01000001_gene1745	1.535e-218	699.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2KF9M@204458|Caulobacterales	204458|Caulobacterales	CG	PQQ-like domain	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ
DYD3_k127_4089174_47	247633.GP2143_17796	2.976e-16	81.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,1ST6N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4145688_4	1161401.ASJA01000005_gene2514	1.607e-105	361.0	COG0457@1|root,COG0457@2|Bacteria,1MVCA@1224|Proteobacteria,2UAC1@28211|Alphaproteobacteria,43WT7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_7,TPR_8
DYD3_k127_4145688_7	394221.Mmar10_0873	2.567e-36	148.0	COG0810@1|root,COG0810@2|Bacteria,1PEDH@1224|Proteobacteria,2UEEK@28211|Alphaproteobacteria,43XZ3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Gram-negative bacterial TonB protein C-terminal	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_4145688_8	1123503.KB908058_gene892	7.991e-31	126.0	COG0848@1|root,COG0848@2|Bacteria,1RI4M@1224|Proteobacteria,2VG9Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	Biopolymer transport protein ExbD/TolR	-	-	-	ko:K03559	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	ExbD
DYD3_k127_4145688_9	1123503.KB908058_gene891	3.039e-25	109.0	COG0848@1|root,COG0848@2|Bacteria,1RHQ3@1224|Proteobacteria,2USCY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	Biopolymer transport protein ExbD/TolR	-	-	-	ko:K03559	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	ExbD
DYD3_k127_4145688_5	1479238.JQMZ01000001_gene2099	2.217e-55	199.0	COG0811@1|root,COG0811@2|Bacteria,1MX60@1224|Proteobacteria,2UAB1@28211|Alphaproteobacteria,43XKK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	TonB system transport protein ExbB	-	-	-	ko:K03561	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	MotA_ExbB
DYD3_k127_4145688_2	1161401.ASJA01000005_gene2509	8.489e-121	403.0	COG0811@1|root,COG0811@2|Bacteria,1MX5J@1224|Proteobacteria,2U43Q@28211|Alphaproteobacteria,43WRH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	MotA TolQ ExbB proton channel	-	-	-	ko:K03561	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	MotA_ExbB
DYD3_k127_4145688_6	1161401.ASJA01000005_gene2508	8.917e-54	202.0	COG1196@1|root,COG1196@2|Bacteria,1NGHR@1224|Proteobacteria,2UA8C@28211|Alphaproteobacteria,43XZ1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Protein of unknown function (DUF3450)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3450
DYD3_k127_4145688_10	1144310.PMI07_001442	6.212e-05	48.0	COG2801@1|root,COG2801@2|Bacteria,1N207@1224|Proteobacteria,2UEQQ@28211|Alphaproteobacteria,4BC7V@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_28,HTH_32,rve,rve_3
DYD3_k127_4145688_1	1161401.ASJA01000005_gene2507	4.192e-172	558.0	COG0616@1|root,COG0616@2|Bacteria,1MUXE@1224|Proteobacteria,2TSXA@28211|Alphaproteobacteria,43W9W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	OU	signal peptide peptidase	sppA	-	-	ko:K04773	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_S49
DYD3_k127_4145688_0	1161401.ASJA01000005_gene2503	3.531e-224	706.0	COG4166@1|root,COG4166@2|Bacteria,1P91R@1224|Proteobacteria,2TT6P@28211|Alphaproteobacteria,43X0B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG4166 ABC-type oligopeptide transport system, periplasmic component	oppA	GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006457,GO:0006810,GO:0006857,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015833,GO:0030288,GO:0030313,GO:0031975,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0061077,GO:0071702,GO:0071705,GO:1900750	-	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	SBP_bac_5
DYD3_k127_4145688_3	1479238.JQMZ01000001_gene2106	9.859e-120	391.0	COG1173@1|root,COG1173@2|Bacteria,1MU26@1224|Proteobacteria,2TTEV@28211|Alphaproteobacteria,43WYG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EP	With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell	oppC	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	BPD_transp_1,OppC_N
DYD3_k127_4174305_17	1161401.ASJA01000007_gene2091	1.323e-105	354.0	COG0763@1|root,COG0763@2|Bacteria,1MVBI@1224|Proteobacteria,2TSEA@28211|Alphaproteobacteria,43WN7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxB	GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	2.4.1.182	ko:K00748	ko00540,ko01100,map00540,map01100	M00060	R04606	RC00005,RC00059	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT19	-	LpxB
DYD3_k127_4174305_26	366602.Caul_2792	2.809e-76	265.0	COG3494@1|root,COG3494@2|Bacteria,1MWTH@1224|Proteobacteria,2U4AB@28211|Alphaproteobacteria,2KFXI@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF1009)	-	GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	-	ko:K09949	-	-	-	-	ko00000	-	-	-	DUF1009
DYD3_k127_4174305_24	1382303.JPOM01000001_gene1355	6.412e-86	295.0	COG1044@1|root,COG1044@2|Bacteria,1MUX6@1224|Proteobacteria,2TS8U@28211|Alphaproteobacteria,2KFNW@204458|Caulobacterales	204458|Caulobacterales	M	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxD	-	2.3.1.191	ko:K02536	ko00540,ko01100,map00540,map01100	M00060	R04550	RC00039,RC00166	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Hexapep,Hexapep_2,LpxD
DYD3_k127_4174305_35	314254.OA2633_02731	1.446e-30	128.0	COG2825@1|root,COG2825@2|Bacteria,1NNT2@1224|Proteobacteria,2UIS2@28211|Alphaproteobacteria,43Y9R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Outer membrane protein (OmpH-like)	-	-	-	ko:K06142	-	-	-	-	ko00000	-	-	-	OmpH
DYD3_k127_4174305_1	1161401.ASJA01000007_gene2085	0.0	1026.0	COG4775@1|root,COG4775@2|Bacteria,1MU0D@1224|Proteobacteria,2TR7W@28211|Alphaproteobacteria,43W6E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	bamA	-	-	ko:K07277	-	-	-	-	ko00000,ko02000,ko03029	1.B.33	-	-	Bac_surface_Ag,POTRA
DYD3_k127_4174305_15	394221.Mmar10_1387	1.972e-108	371.0	COG0750@1|root,COG0750@2|Bacteria,1MU91@1224|Proteobacteria,2TQXJ@28211|Alphaproteobacteria,43WSX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	membrane-associated Zn-dependent proteases 1	rseP	-	-	ko:K11749	ko02024,ko04112,map02024,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	PDZ,PDZ_2,Peptidase_M50
DYD3_k127_4174305_11	1121033.AUCF01000006_gene4297	7.484e-132	434.0	COG0743@1|root,COG0743@2|Bacteria,1MU4G@1224|Proteobacteria,2TSD1@28211|Alphaproteobacteria,2JQ6Y@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)	dxr	-	1.1.1.267	ko:K00099	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05688	RC01452	ko00000,ko00001,ko00002,ko01000	-	-	-	DXPR_C,DXP_redisom_C,DXP_reductoisom
DYD3_k127_4174305_32	1430440.MGMSRv2_1202	2.639e-46	179.0	COG0575@1|root,COG0575@2|Bacteria,1MWSV@1224|Proteobacteria,2U9ED@28211|Alphaproteobacteria,2JSSK@204441|Rhodospirillales	204441|Rhodospirillales	I	Belongs to the CDS family	cdsA	-	2.7.7.41	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	M00093	R01799	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_1
DYD3_k127_4174305_22	1123503.KB908059_gene434	2.56e-88	298.0	COG0020@1|root,COG0020@2|Bacteria,1MVP1@1224|Proteobacteria,2TTVJ@28211|Alphaproteobacteria,2KFIA@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids	uppS	-	2.5.1.31	ko:K00806	ko00900,ko01110,map00900,map01110	-	R06447	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006	-	-	-	Prenyltransf
DYD3_k127_4174305_27	1122613.ATUP01000001_gene126	6.85e-76	261.0	COG0233@1|root,COG0233@2|Bacteria,1N66T@1224|Proteobacteria,2U5B2@28211|Alphaproteobacteria,43XG0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another	frr	GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	ko:K02838	-	-	-	-	ko00000,ko03012	-	-	-	RRF
DYD3_k127_4174305_14	314254.OA2633_02766	1.987e-113	374.0	COG0528@1|root,COG0528@2|Bacteria,1MV3N@1224|Proteobacteria,2TQYN@28211|Alphaproteobacteria,43WFQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the reversible phosphorylation of UMP to UDP	pyrH	-	2.7.4.22	ko:K09903	ko00240,ko01100,map00240,map01100	-	R00158	RC00002	ko00000,ko00001,ko01000	-	-	-	AA_kinase
DYD3_k127_4174305_16	394221.Mmar10_1381	2.276e-107	356.0	COG0264@1|root,COG0264@2|Bacteria,1MUS2@1224|Proteobacteria,2TQM0@28211|Alphaproteobacteria,43WBQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome	tsf	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	ko:K02357	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EF_TS
DYD3_k127_4174305_13	1161401.ASJA01000007_gene2077	3.498e-119	393.0	COG0052@1|root,COG0052@2|Bacteria,1MU33@1224|Proteobacteria,2TRXE@28211|Alphaproteobacteria,43WIG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the universal ribosomal protein uS2 family	rpsB	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02967	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S2
DYD3_k127_4174305_0	1161401.ASJA01000007_gene2076	0.0	1374.0	COG0587@1|root,COG0587@2|Bacteria,1MUIF@1224|Proteobacteria,2TSCN@28211|Alphaproteobacteria,43X9Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA polymerase	dnaE	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
DYD3_k127_4174305_20	1121123.AUAO01000003_gene2175	7.824e-94	315.0	COG1136@1|root,COG1136@2|Bacteria,1MVSQ@1224|Proteobacteria,2TSBE@28211|Alphaproteobacteria,2KF1X@204458|Caulobacterales	204458|Caulobacterales	P	Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner	lolD	-	-	ko:K09810	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.125	-	-	ABC_tran
DYD3_k127_4174305_12	450851.PHZ_c1784	5.477e-121	421.0	COG4591@1|root,COG4591@2|Bacteria,1MVV7@1224|Proteobacteria,2TRBX@28211|Alphaproteobacteria,2KFSM@204458|Caulobacterales	204458|Caulobacterales	M	lipoprotein releasing system, transmembrane protein, LolC E family	-	-	-	ko:K09808	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.125	-	-	FtsX,MacB_PCD
DYD3_k127_4174305_6	1479238.JQMZ01000001_gene1854	2.505e-234	736.0	COG0442@1|root,COG0442@2|Bacteria,1MU7E@1224|Proteobacteria,2TQQ4@28211|Alphaproteobacteria,43W4G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro)	proS	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b
DYD3_k127_4174305_39	1429916.X566_21570	3.164e-16	82.0	COG5454@1|root,COG5454@2|Bacteria,1N6T0@1224|Proteobacteria,2UF4C@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1467)	MA20_37275	-	-	-	-	-	-	-	-	-	-	-	DUF1467
DYD3_k127_4174305_5	1161401.ASJA01000007_gene2069	2.355e-237	745.0	COG0595@1|root,COG0595@2|Bacteria,1MUGV@1224|Proteobacteria,2TQTR@28211|Alphaproteobacteria,43W4K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	hydrolase of the metallo-beta-lactamase superfamily	rnjA	-	-	ko:K12574	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	Lactamase_B,Lactamase_B_2,RMMBL
DYD3_k127_4174305_19	394221.Mmar10_1370	5.504e-103	353.0	COG1521@1|root,COG1521@2|Bacteria,1MUYA@1224|Proteobacteria,2TS5A@28211|Alphaproteobacteria,43W4B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis	coaX	-	2.7.1.33	ko:K03525	ko00770,ko01100,map00770,map01100	M00120	R02971,R03018,R04391	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Pan_kinase
DYD3_k127_4174305_29	1123503.KB908059_gene448	9.026e-61	218.0	COG0340@1|root,COG0340@2|Bacteria,1MWCC@1224|Proteobacteria,2TS82@28211|Alphaproteobacteria,2KFF4@204458|Caulobacterales	204458|Caulobacterales	H	biotin lipoate A B protein ligase	-	-	6.3.4.15	ko:K03524	ko00780,ko01100,map00780,map01100	-	R01074,R05145	RC00043,RC00070,RC00096,RC02896	ko00000,ko00001,ko01000,ko03000	-	-	-	BPL_C,BPL_LplA_LipB
DYD3_k127_4174305_10	314254.OA2633_02841	7.713e-159	515.0	COG1007@1|root,COG1007@2|Bacteria,1MV56@1224|Proteobacteria,2TQMX@28211|Alphaproteobacteria,43WFH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoN	-	1.6.5.3	ko:K00343	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Proton_antipo_M
DYD3_k127_4174305_8	1161401.ASJA01000007_gene2065	6.891e-218	689.0	COG1008@1|root,COG1008@2|Bacteria,1MV7V@1224|Proteobacteria,2TSNK@28211|Alphaproteobacteria,43WV9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NADH ubiquinone oxidoreductase subunit	nuoM	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00342	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q5_N,Proton_antipo_M
DYD3_k127_4174305_3	1161401.ASJA01000007_gene2064	1.284e-284	889.0	COG1009@1|root,COG1009@2|Bacteria,1MW2M@1224|Proteobacteria,2TQSS@28211|Alphaproteobacteria,43X4E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CP	COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit	nuoL	-	1.6.5.3	ko:K00341	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	NADH5_C,Proton_antipo_M,Proton_antipo_N
DYD3_k127_4174305_33	394221.Mmar10_1365	2.893e-41	165.0	COG0713@1|root,COG0713@2|Bacteria,1RH0S@1224|Proteobacteria,2U93P@28211|Alphaproteobacteria,43Y5K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoK	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00340	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q2
DYD3_k127_4174305_28	1161401.ASJA01000007_gene2062	1.913e-69	243.0	COG0839@1|root,COG0839@2|Bacteria,1MWJV@1224|Proteobacteria,2TRB2@28211|Alphaproteobacteria,43XQR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the complex I subunit 6 family	nuoJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00339	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q3
DYD3_k127_4174305_21	1161401.ASJA01000007_gene2061	1.013e-93	308.0	COG1143@1|root,COG1143@2|Bacteria,1MV90@1224|Proteobacteria,2TRFE@28211|Alphaproteobacteria,43WF3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoI	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3,1.6.99.3	ko:K00338,ko:K03941	ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016	M00143,M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1,3.D.1.6	-	-	Fer4
DYD3_k127_4174305_9	314254.OA2633_02871	4.161e-162	516.0	COG1005@1|root,COG1005@2|Bacteria,1MU2R@1224|Proteobacteria,2TS09@28211|Alphaproteobacteria,43W4V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone	nuoH	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00337	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	NADHdh
DYD3_k127_4174305_38	1207058.L53_02195	1.033e-16	88.0	COG3193@1|root,COG3193@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
DYD3_k127_4174305_2	1161401.ASJA01000007_gene2059	9.974e-311	971.0	COG1034@1|root,COG1034@2|Bacteria,1P8MN@1224|Proteobacteria,2TS97@28211|Alphaproteobacteria,43WEE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G)	nuoG	-	1.6.5.3	ko:K00336	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Fer2_4,Molybdopterin,NADH-G_4Fe-4S_3,NADH_dhqG_C
DYD3_k127_4174305_34	1479238.JQMZ01000001_gene1868	6.089e-34	135.0	COG2350@1|root,COG2350@2|Bacteria,1MZ8Y@1224|Proteobacteria,2UHFW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the	-	-	-	ko:K09780	-	-	-	-	ko00000	-	-	-	YCII
DYD3_k127_4174305_4	1161401.ASJA01000007_gene2058	1.141e-254	788.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2TRAH@28211|Alphaproteobacteria,43X2Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain	nuoF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00335	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_51K,NADH_4Fe-4S,SLBB
DYD3_k127_4174305_37	1144275.COCOR_02293	7.691e-30	126.0	COG0346@1|root,COG0346@2|Bacteria,1RH4D@1224|Proteobacteria,43ACG@68525|delta/epsilon subdivisions,2X5SB@28221|Deltaproteobacteria,2Z376@29|Myxococcales	28221|Deltaproteobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_4174305_25	1161401.ASJA01000007_gene2057	8.655e-81	278.0	COG1905@1|root,COG1905@2|Bacteria,1MWS2@1224|Proteobacteria,2TSEJ@28211|Alphaproteobacteria,43W6C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG1905 NADH ubiquinone oxidoreductase 24 kD subunit	nuoE	-	1.6.5.3,1.6.99.3	ko:K00334,ko:K03943	ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016	M00143,M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1,3.D.1.6	-	-	2Fe-2S_thioredx
DYD3_k127_4174305_36	1280954.HPO_13862	3.667e-30	132.0	COG4538@1|root,COG4538@2|Bacteria,1N60B@1224|Proteobacteria,2UEVR@28211|Alphaproteobacteria,43YXR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_4174305_7	1121948.AUAC01000003_gene2817	7.883e-230	715.0	COG0649@1|root,COG0649@2|Bacteria,1MVIN@1224|Proteobacteria,2TQZ0@28211|Alphaproteobacteria,43WS4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoD	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00333	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_49kDa
DYD3_k127_4174305_31	384765.SIAM614_15265	1.54e-48	186.0	COG3791@1|root,COG3791@2|Bacteria,1N0KM@1224|Proteobacteria,2UBTK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_4174305_23	78245.Xaut_4631	4.427e-88	294.0	COG0852@1|root,COG0852@2|Bacteria,1MX4B@1224|Proteobacteria,2TSMT@28211|Alphaproteobacteria,3EYY8@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoC	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00332	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_30kDa
DYD3_k127_4174305_18	1207058.L53_14705	4.271e-105	344.0	COG0377@1|root,COG0377@2|Bacteria,1MUI2@1224|Proteobacteria,2TQK3@28211|Alphaproteobacteria,43X81@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoB	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00331	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q6
DYD3_k127_4174305_30	582899.Hden_1946	7.818e-51	181.0	COG0838@1|root,COG0838@2|Bacteria,1RGUT@1224|Proteobacteria,2U72Q@28211|Alphaproteobacteria,3N6VM@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00330	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q4
DYD3_k127_4184847_1	715226.ABI_07940	2.88e-223	695.0	COG0050@1|root,COG0050@2|Bacteria,1MVC0@1224|Proteobacteria,2TQP8@28211|Alphaproteobacteria,2KFA9@204458|Caulobacterales	204458|Caulobacterales	J	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	-	-	-	-	-	-	-	-	-	-	-	-	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
DYD3_k127_4184847_10	366602.Caul_4325	1.146e-39	150.0	COG1695@1|root,COG1695@2|Bacteria,1N3KH@1224|Proteobacteria,2UE0D@28211|Alphaproteobacteria,2KGYN@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	PadR
DYD3_k127_4184847_12	1449049.JONW01000005_gene1372	1.786e-31	140.0	2DN1Y@1|root,32V1U@2|Bacteria,1N3VE@1224|Proteobacteria,2UCDY@28211|Alphaproteobacteria,2KISB@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4184847_8	1041159.AZUW01000019_gene144	9.155e-62	226.0	COG3803@1|root,COG3803@2|Bacteria,1RHYI@1224|Proteobacteria,2U7AN@28211|Alphaproteobacteria,4BJQ0@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF924)	-	-	-	-	-	-	-	-	-	-	-	-	DUF924
DYD3_k127_4184847_5	1535287.JP74_12345	4.667e-107	357.0	COG4912@1|root,COG4912@2|Bacteria	2|Bacteria	L	Dna alkylation repair	-	-	-	-	-	-	-	-	-	-	-	-	DNA_alkylation
DYD3_k127_4184847_14	876269.ARWA01000001_gene2511	8.209e-13	72.0	COG3832@1|root,COG3832@2|Bacteria,1RAW4@1224|Proteobacteria,2UI5Z@28211|Alphaproteobacteria,3NCPF@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_4184847_13	1205680.CAKO01000038_gene1971	4.93e-29	121.0	COG3832@1|root,COG3832@2|Bacteria,1RAW4@1224|Proteobacteria,2UI5Z@28211|Alphaproteobacteria,2JUUI@204441|Rhodospirillales	204441|Rhodospirillales	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_4184847_11	1040989.AWZU01000004_gene7027	5.295e-33	130.0	COG0640@1|root,COG0640@2|Bacteria,1RJ39@1224|Proteobacteria,2UA6C@28211|Alphaproteobacteria,3JZMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
DYD3_k127_4184847_7	187303.BN69_0138	6.049e-69	241.0	COG0500@1|root,COG2226@2|Bacteria,1RASQ@1224|Proteobacteria	1224|Proteobacteria	Q	PFAM Methyltransferase type 11	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_4184847_6	1207063.P24_18107	5.594e-86	290.0	COG0607@1|root,COG0640@1|root,COG0607@2|Bacteria,COG0640@2|Bacteria,1R71B@1224|Proteobacteria,2TVMK@28211|Alphaproteobacteria,2JWJ8@204441|Rhodospirillales	204441|Rhodospirillales	KP	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20,Rhodanese
DYD3_k127_4184847_4	1057002.KB905370_gene4163	1.367e-143	471.0	COG0477@1|root,COG2814@2|Bacteria,1MW59@1224|Proteobacteria,2TRA3@28211|Alphaproteobacteria,4B863@82115|Rhizobiaceae	28211|Alphaproteobacteria	EGP	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_4184847_3	1280941.HY2_08485	5.628e-178	567.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TRPK@28211|Alphaproteobacteria,43WS6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Aminotransferase	aatA	-	2.6.1.1	ko:K00812	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	-	R00355,R00694,R00734,R00896,R02433,R02619,R05052	RC00006	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_4184847_2	1282876.BAOK01000001_gene3321	4.571e-184	595.0	28HMZ@1|root,2Z7WD@2|Bacteria,1MU3Q@1224|Proteobacteria,2TSGX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3604)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3604
DYD3_k127_4184847_9	1304878.AUGD01000013_gene2853	1.467e-59	209.0	COG2606@1|root,COG2606@2|Bacteria,1RGX5@1224|Proteobacteria,2U5DV@28211|Alphaproteobacteria,3JVQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aminoacyl-tRNA editing domain	ybaK	GO:0002161,GO:0003674,GO:0003824,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0043906,GO:0044237,GO:0044238,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360	-	ko:K03976	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	tRNA_edit
DYD3_k127_4184847_15	1288484.APCS01000013_gene918	2.547e-05	56.0	COG0346@1|root,COG0346@2|Bacteria,1WJ1B@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	E	PFAM Glyoxalase bleomycin resistance protein dioxygenase	-	-	1.13.11.2	ko:K00446	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
DYD3_k127_4184847_0	1161401.ASJA01000001_gene342	4.48e-240	767.0	COG2304@1|root,COG2304@2|Bacteria,1MW8K@1224|Proteobacteria,2TV9Y@28211|Alphaproteobacteria,43ZBD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	von Willebrand factor, type A	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	VIT,VWA_3
DYD3_k127_4200761_0	1123503.KB908057_gene2301	7.078e-253	809.0	COG1674@1|root,COG1674@2|Bacteria,1MVPI@1224|Proteobacteria,2TR48@28211|Alphaproteobacteria,2KFXJ@204458|Caulobacterales	204458|Caulobacterales	D	cell division protein FtsK	-	-	-	ko:K03466	-	-	-	-	ko00000,ko03036	3.A.12	-	-	FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma
DYD3_k127_4200761_1	1122613.ATUP01000001_gene1539	1.988e-25	108.0	COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,2TRZU@28211|Alphaproteobacteria,4410D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CH	FAD binding domain	ubiH	GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016491,GO:0019168,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663	-	ko:K03185	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04989,R08773	RC02670	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
DYD3_k127_4203124_0	1479238.JQMZ01000001_gene1054	4.354e-249	783.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TQRZ@28211|Alphaproteobacteria,43X7J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	ABC transporter	yheS	-	-	ko:K06158	-	-	-	-	ko00000,ko03012	-	-	-	ABC_tran,ABC_tran_Xtn
DYD3_k127_4203124_11	394221.Mmar10_1136	3.424e-34	144.0	COG0189@1|root,COG0189@2|Bacteria,1MVN2@1224|Proteobacteria,2TUT9@28211|Alphaproteobacteria,440C0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	HJ	RimK-like ATP-grasp domain	-	-	-	-	-	-	-	-	-	-	-	-	RimK
DYD3_k127_4203124_3	1123503.KB908056_gene1362	1.185e-135	447.0	COG0206@1|root,COG0206@2|Bacteria,1MV2X@1224|Proteobacteria,2TS1Q@28211|Alphaproteobacteria,2KF35@204458|Caulobacterales	204458|Caulobacterales	D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity	ftsZ	-	-	ko:K03531	ko04112,map04112	-	-	-	ko00000,ko00001,ko02048,ko03036,ko04812	-	-	-	FtsZ_C,Tubulin
DYD3_k127_4203124_6	1161401.ASJA01000001_gene398	1.574e-114	385.0	COG0849@1|root,COG0849@2|Bacteria,1MUSR@1224|Proteobacteria,2TQZB@28211|Alphaproteobacteria,43WM7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring	ftsA	-	-	ko:K03590	ko04112,map04112	-	-	-	ko00000,ko00001,ko03036,ko04812	-	-	-	FtsA,SHS2_FTSA
DYD3_k127_4203124_10	1161401.ASJA01000001_gene397	5.545e-50	189.0	COG1589@1|root,COG1589@2|Bacteria,1MY1Q@1224|Proteobacteria,2TQPU@28211|Alphaproteobacteria,43Y92@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	POTRA domain, FtsQ-type	ftsQ	-	-	ko:K03589	ko04112,map04112	-	-	-	ko00000,ko00001,ko03036	-	-	-	FtsQ,POTRA_1
DYD3_k127_4203124_4	314254.OA2633_05396	2.14e-127	414.0	COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,2TREC@28211|Alphaproteobacteria,43W7H@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the D-alanine--D-alanine ligase family	ddl	-	1.3.1.98,6.3.2.4	ko:K00075,ko:K01921	ko00473,ko00520,ko00550,ko01100,ko01502,map00473,map00520,map00550,map01100,map01502	-	R01150,R03191,R03192	RC00064,RC00141,RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Dala_Dala_lig_N
DYD3_k127_4203124_5	314254.OA2633_05401	1.066e-118	389.0	COG0812@1|root,COG0812@2|Bacteria,1MXDH@1224|Proteobacteria,2TRQR@28211|Alphaproteobacteria,43W9B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Cell wall formation	murB	-	1.3.1.98	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R03191,R03192	RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	FAD_binding_4,MurB_C
DYD3_k127_4203124_12	395964.KE386496_gene610	4.636e-34	138.0	COG4636@1|root,COG4636@2|Bacteria,1RJC2@1224|Proteobacteria,2UA5B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Putative restriction endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	Uma2
DYD3_k127_4203124_1	1161401.ASJA01000001_gene394	8.68e-200	634.0	COG0773@1|root,COG0773@2|Bacteria,1MV68@1224|Proteobacteria,2TRT0@28211|Alphaproteobacteria,43WRY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the MurCDEF family	murC	-	6.3.2.8	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R03193	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_4203124_9	1123503.KB908056_gene1368	2.782e-97	347.0	COG0707@1|root,COG0707@2|Bacteria,1MVIB@1224|Proteobacteria,2TSEY@28211|Alphaproteobacteria,2KFCP@204458|Caulobacterales	204458|Caulobacterales	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)	murG	-	2.4.1.227	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	-	R05032,R05662	RC00005,RC00049	ko00000,ko00001,ko01000,ko01011	-	GT28	-	Glyco_tran_28_C,Glyco_transf_28
DYD3_k127_4203124_8	394221.Mmar10_2079	6.385e-104	352.0	COG0772@1|root,COG0772@2|Bacteria,1MVDB@1224|Proteobacteria,2TQSA@28211|Alphaproteobacteria,43WMJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Belongs to the SEDS family	ftsW	-	-	ko:K03588	ko04112,map04112	-	-	-	ko00000,ko00001,ko02000,ko03036	2.A.103.1	-	-	FTSW_RODA_SPOVE
DYD3_k127_4203124_7	1280954.HPO_14556	1.698e-106	362.0	COG0771@1|root,COG0771@2|Bacteria,1MVYD@1224|Proteobacteria,2TTE8@28211|Alphaproteobacteria,43X8I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	murD	-	6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase_C,Mur_ligase_M
DYD3_k127_4203124_2	582899.Hden_0240	4.018e-142	460.0	COG0472@1|root,COG0472@2|Bacteria,1MUTK@1224|Proteobacteria,2TRUG@28211|Alphaproteobacteria,3N66M@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	mraY	-	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	-	R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146	-	-	Glycos_transf_4,MraY_sig1
DYD3_k127_4217803_9	59538.XP_005975965.1	2.244e-89	318.0	COG0030@1|root,KOG0821@2759|Eukaryota,38EES@33154|Opisthokonta,3BFPQ@33208|Metazoa,3CSHS@33213|Bilateria,48A1F@7711|Chordata,4940N@7742|Vertebrata,3JCFY@40674|Mammalia	33154|Opisthokonta	A	rRNA (adenine-N6,N6-)-dimethyltransferase activity	-	-	-	ko:K15266	-	-	-	-	ko00000,ko01000,ko03009,ko03029	-	-	-	RrnaAD
DYD3_k127_4217803_5	1121123.AUAO01000003_gene2240	1.453e-110	370.0	COG1995@1|root,COG1995@2|Bacteria,1MX5W@1224|Proteobacteria,2TSKF@28211|Alphaproteobacteria,2KF73@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)	pdxA	-	1.1.1.262	ko:K00097	ko00750,ko01100,map00750,map01100	M00124	R05681,R05837,R07406	RC00089,RC00675,RC01475	ko00000,ko00001,ko00002,ko01000	-	-	-	PdxA
DYD3_k127_4217803_8	509190.Cseg_2292	1.503e-90	314.0	COG0760@1|root,COG0760@2|Bacteria,1MVB3@1224|Proteobacteria,2TSJ3@28211|Alphaproteobacteria,2KFBX@204458|Caulobacterales	204458|Caulobacterales	M	Chaperone SurA	-	-	5.2.1.8	ko:K03771	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase,SurA_N,SurA_N_3
DYD3_k127_4217803_2	1161401.ASJA01000019_gene1145	2.408e-178	584.0	COG1452@1|root,COG1452@2|Bacteria,1MUJC@1224|Proteobacteria,2TR3B@28211|Alphaproteobacteria,43WA8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane	lptD	-	-	ko:K04744	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	OstA,OstA_C
DYD3_k127_4217803_11	394221.Mmar10_1225	8.801e-79	295.0	COG0795@1|root,COG0795@2|Bacteria,1MVW3@1224|Proteobacteria,2TR76@28211|Alphaproteobacteria,43WZU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Predicted permease YjgP/YjgQ family	lptG	-	-	ko:K11720	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko02000	1.B.42.1	-	-	YjgP_YjgQ
DYD3_k127_4217803_7	1161401.ASJA01000019_gene1143	6.379e-100	340.0	COG0795@1|root,COG0795@2|Bacteria,1MUF2@1224|Proteobacteria,2TQUB@28211|Alphaproteobacteria,43W8P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Predicted permease YjgP/YjgQ family	MA20_28210	-	-	ko:K07091	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko02000	1.B.42.1	-	-	YjgP_YjgQ
DYD3_k127_4217803_3	1122137.AQXF01000002_gene315	1.031e-158	518.0	COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,2TQU9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	pepA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17,Peptidase_M17_N
DYD3_k127_4217803_12	1292034.OR37_00085	1.677e-38	165.0	COG2927@1|root,COG2927@2|Bacteria,1RGVC@1224|Proteobacteria,2U94V@28211|Alphaproteobacteria,2KGP1@204458|Caulobacterales	204458|Caulobacterales	L	DNA polymerase III	-	-	2.7.7.7	ko:K02339	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_chi
DYD3_k127_4217803_14	376733.IT41_01265	2.305e-06	59.0	2DR05@1|root,339MI@2|Bacteria,1NHD4@1224|Proteobacteria,2UJCD@28211|Alphaproteobacteria,2PXU9@265|Paracoccus	28211|Alphaproteobacteria	S	Peptidase inhibitor I78 family	-	-	-	-	-	-	-	-	-	-	-	-	Inhibitor_I78
DYD3_k127_4217803_1	946235.CAER01000008_gene395	5.245e-214	685.0	COG4993@1|root,COG4993@2|Bacteria,1V091@1239|Firmicutes,4HCPE@91061|Bacilli	91061|Bacilli	CG	PQQ enzyme repeat	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_4217803_10	1479238.JQMZ01000001_gene936	9.228e-81	303.0	COG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,2TUHH@28211|Alphaproteobacteria,43X28@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis	lpxC	-	3.5.1.108	ko:K02535	ko00540,ko01100,map00540,map01100	M00060	R04587	RC00166,RC00300	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	LpxC
DYD3_k127_4217803_6	1479238.JQMZ01000001_gene937	1.127e-105	350.0	COG4105@1|root,COG4105@2|Bacteria,1MVS5@1224|Proteobacteria,2TRZ5@28211|Alphaproteobacteria,43WDH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	bamD	-	-	ko:K05807	-	-	-	-	ko00000,ko02000	1.B.33.1	-	-	YfiO
DYD3_k127_4217803_0	1382303.JPOM01000001_gene1778	3.14e-265	835.0	COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,2TRHK@28211|Alphaproteobacteria,2KFXN@204458|Caulobacterales	204458|Caulobacterales	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	ligA	-	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2
DYD3_k127_4217803_13	1206732.BAGD01000069_gene2705	1.149e-20	102.0	COG0500@1|root,COG2226@2|Bacteria,2HWAV@201174|Actinobacteria,4FUKD@85025|Nocardiaceae	201174|Actinobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_4217803_4	314254.OA2633_07889	1.203e-146	472.0	COG0006@1|root,COG0006@2|Bacteria,1MUZS@1224|Proteobacteria,2TQXN@28211|Alphaproteobacteria,43WNB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Aminopeptidase	pepP	-	3.4.11.9	ko:K01262	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Creatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C
DYD3_k127_4233195_0	394221.Mmar10_1485	0.0	1459.0	COG1197@1|root,COG1197@2|Bacteria,1MUXG@1224|Proteobacteria,2TR2H@28211|Alphaproteobacteria,43W76@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site	mfd	-	-	ko:K03723	ko03420,map03420	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF
DYD3_k127_4233195_15	1121124.JNIX01000009_gene2885	2.93e-19	92.0	COG2938@1|root,COG2938@2|Bacteria,1N6SJ@1224|Proteobacteria,2UFF5@28211|Alphaproteobacteria,2KH5Y@204458|Caulobacterales	204458|Caulobacterales	S	Flavinator of succinate dehydrogenase	-	-	-	ko:K09159	-	-	-	-	ko00000,ko02048	-	-	-	Sdh5
DYD3_k127_4233195_1	394221.Mmar10_1487	1.085e-272	856.0	COG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,2TR86@28211|Alphaproteobacteria,43W4S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	ATP-dependent DNA helicase RecG	recG	GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494	3.6.4.12	ko:K03655	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C,RecG_wedge
DYD3_k127_4233195_6	1123503.KB908059_gene339	4.171e-74	257.0	COG2928@1|root,COG2928@2|Bacteria,1MWT5@1224|Proteobacteria,2TZPK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF502)	MA20_12960	-	-	-	-	-	-	-	-	-	-	-	DUF502
DYD3_k127_4233195_5	1161401.ASJA01000009_gene1736	2.637e-97	334.0	COG2267@1|root,COG2267@2|Bacteria,1MVDA@1224|Proteobacteria,2TUDQ@28211|Alphaproteobacteria,43XJQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Protein of unknown function (DUF3089)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3089
DYD3_k127_4233195_3	59538.XP_005968325.1	7.804e-167	529.0	COG0031@1|root,KOG1481@2759|Eukaryota,39P9K@33154|Opisthokonta,3BYC3@33208|Metazoa,3DGPP@33213|Bilateria,48E0Q@7711|Chordata,49P7A@7742|Vertebrata,3JP3Y@40674|Mammalia	33208|Metazoa	E	Pyridoxal-phosphate dependent enzyme	-	-	-	-	-	-	-	-	-	-	-	-	PALP
DYD3_k127_4233195_7	1411123.JQNH01000001_gene1603	1.38e-73	260.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	sulfurtransferase	sseA	GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0016740,GO:0016782,GO:0016783,GO:0016784,GO:0031668,GO:0033554,GO:0034641,GO:0042221,GO:0042262,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:1901360	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
DYD3_k127_4233195_4	1121948.AUAC01000002_gene936	1.434e-106	361.0	COG0626@1|root,COG0626@2|Bacteria,1MU9E@1224|Proteobacteria,2TS8Z@28211|Alphaproteobacteria,43X06@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG0626 Cystathionine beta-lyases cystathionine gamma-synthases	metC	-	4.4.1.8	ko:K01760	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R00782,R01286,R02408,R04941	RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
DYD3_k127_4233195_11	1187851.A33M_1772	1.036e-36	141.0	2C7TH@1|root,32RJS@2|Bacteria,1MZK8@1224|Proteobacteria,2UC2R@28211|Alphaproteobacteria,3FDDY@34008|Rhodovulum	28211|Alphaproteobacteria	S	ETC complex I subunit conserved region	MA20_30235	-	1.6.5.3	ko:K00329	ko00190,map00190	-	R11945	RC00061	ko00000,ko00001,ko01000	-	-	-	ETC_C1_NDUFA4
DYD3_k127_4233195_9	1430440.MGMSRv2_1977	1.436e-68	256.0	COG2831@1|root,COG2831@2|Bacteria,1MWEC@1224|Proteobacteria,2U04Z@28211|Alphaproteobacteria,2JT2T@204441|Rhodospirillales	204441|Rhodospirillales	U	Haemolysin secretion/activation protein ShlB/FhaC/HecB	-	-	-	-	-	-	-	-	-	-	-	-	POTRA_2,ShlB
DYD3_k127_4233195_8	1216976.AX27061_3596	3.438e-71	277.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2VJ6Y@28216|Betaproteobacteria	28216|Betaproteobacteria	U	TIGRFAM filamentous haemagglutinin family outer membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	Glug,Haemagg_act
DYD3_k127_4233195_2	1545915.JROG01000004_gene1871	3.335e-218	750.0	COG3210@1|root,COG3595@1|root,COG4733@1|root,COG3210@2|Bacteria,COG3595@2|Bacteria,COG4733@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,2K35Q@204457|Sphingomonadales	204457|Sphingomonadales	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,FG-GAP_2,Haemagg_act
DYD3_k127_4233195_12	323098.Nwi_2170	3.774e-34	139.0	COG3672@1|root,COG3672@2|Bacteria,1NUXW@1224|Proteobacteria,2TTXC@28211|Alphaproteobacteria,3JV82@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial transglutaminase-like cysteine proteinase BTLCP	MA20_31720	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C93
DYD3_k127_4233195_18	1174504.AJTN02000176_gene2070	0.0005888	46.0	2BR4S@1|root,32K2S@2|Bacteria,1U1SU@1239|Firmicutes,4IB95@91061|Bacilli,1ZKR2@1386|Bacillus	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4233195_14	1082931.KKY_1178	1.371e-33	139.0	COG1430@1|root,COG1430@2|Bacteria,1MZBJ@1224|Proteobacteria,2UBSI@28211|Alphaproteobacteria,3N7BU@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	S	Uncharacterized ACR, COG1430	-	-	-	ko:K09005	-	-	-	-	ko00000	-	-	-	DUF192
DYD3_k127_4233195_10	450851.PHZ_c1639	1.621e-43	169.0	COG1278@1|root,COG1278@2|Bacteria,1RAUE@1224|Proteobacteria,2U0S7@28211|Alphaproteobacteria,2KGHD@204458|Caulobacterales	204458|Caulobacterales	K	DNA-binding	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_4233195_13	1238182.C882_3851	1.211e-33	141.0	COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,2TU17@28211|Alphaproteobacteria,2JSXW@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the glutathione peroxidase family	-	-	1.11.1.9	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	-	R00274,R07034,R07035	RC00011,RC00982	ko00000,ko00001,ko01000	-	-	-	GSHPx
DYD3_k127_4244015_13	633149.Bresu_2055	9.283e-06	51.0	2ED7G@1|root,32HXH@2|Bacteria,1NR36@1224|Proteobacteria,2UQ2U@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_4244015_9	1120956.JHZK01000008_gene528	5.872e-24	106.0	COG1525@1|root,COG1525@2|Bacteria,1N0I9@1224|Proteobacteria,2V8VR@28211|Alphaproteobacteria,1JQEY@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	Staphylococcal nuclease homologue	-	-	-	-	-	-	-	-	-	-	-	-	SNase
DYD3_k127_4244015_4	1500306.JQLA01000010_gene995	1.311e-67	244.0	COG0330@1|root,COG0330@2|Bacteria,1N5JY@1224|Proteobacteria,2TUCR@28211|Alphaproteobacteria,4BAPA@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	prohibitin homologues	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
DYD3_k127_4244015_8	380358.XALC_3037	3.161e-28	129.0	COG4922@1|root,COG4922@2|Bacteria,1MYTU@1224|Proteobacteria,1SAR7@1236|Gammaproteobacteria,1X8W6@135614|Xanthomonadales	135614|Xanthomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_4244015_7	1336237.JAEE01000006_gene792	2.316e-32	141.0	COG4922@1|root,COG4922@2|Bacteria,1MYTU@1224|Proteobacteria,1SAR7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_4244015_5	648885.KB316282_gene1306	8.017e-59	217.0	COG3622@1|root,COG3622@2|Bacteria,1MV53@1224|Proteobacteria,2TSVI@28211|Alphaproteobacteria,1JS4Y@119045|Methylobacteriaceae	28211|Alphaproteobacteria	G	Belongs to the hyi family	hyi	-	5.3.1.22	ko:K01816	ko00630,ko01100,map00630,map01100	-	R01394	RC00511	ko00000,ko00001,ko01000	-	-	-	AP_endonuc_2
DYD3_k127_4244015_10	509190.Cseg_0102	4.151e-21	94.0	COG5508@1|root,COG5508@2|Bacteria,1N7D3@1224|Proteobacteria,2UF8M@28211|Alphaproteobacteria,2KHD7@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF1674)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1674
DYD3_k127_4244015_0	1035191.HMPREF0185_02237	7.934e-122	399.0	COG0501@1|root,COG0501@2|Bacteria,1MUV4@1224|Proteobacteria,2TS3N@28211|Alphaproteobacteria,2KG3X@204458|Caulobacterales	204458|Caulobacterales	O	Belongs to the peptidase M48B family	htpX	-	-	ko:K03799	-	M00743	-	-	ko00000,ko00002,ko01000,ko01002	-	-	-	Peptidase_M48
DYD3_k127_4244015_11	383407.XOC_2142	4.835e-11	75.0	28RNU@1|root,2ZE1H@2|Bacteria,1P6CR@1224|Proteobacteria,1SUXE@1236|Gammaproteobacteria,1X8FD@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4244015_3	1280952.HJA_10695	2.422e-76	270.0	COG3768@1|root,COG3768@2|Bacteria,1NNZU@1224|Proteobacteria	1224|Proteobacteria	S	Domain of unknown function (DUF697)	-	-	-	-	-	-	-	-	-	-	-	-	DUF697
DYD3_k127_4244015_2	864069.MicloDRAFT_00013840	1.166e-84	295.0	COG0583@1|root,COG0583@2|Bacteria,1R51E@1224|Proteobacteria,2TZIK@28211|Alphaproteobacteria,1JXVG@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	PFAM Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4244015_6	864069.MicloDRAFT_00013720	1.045e-42	167.0	COG3439@1|root,COG3439@2|Bacteria,1MZ38@1224|Proteobacteria,2U7V5@28211|Alphaproteobacteria,1JW5W@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF302	-	-	-	-	-	-	-	-	-	-	-	-	DUF302
DYD3_k127_4244015_1	1380391.JIAS01000018_gene912	1.552e-103	357.0	COG0144@1|root,COG0144@2|Bacteria,1MWPE@1224|Proteobacteria,2TSIA@28211|Alphaproteobacteria,2JQA7@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family	rsmB	-	2.1.1.176	ko:K03500	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltr_RsmB-F,NusB
DYD3_k127_425198_2	1123503.KB908058_gene999	1.316e-25	113.0	COG3827@1|root,COG3827@2|Bacteria,1MX61@1224|Proteobacteria,2TSG8@28211|Alphaproteobacteria,2KGXT@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF2497)	-	-	-	ko:K09991	-	-	-	-	ko00000	-	-	-	DUF2497
DYD3_k127_425198_0	394221.Mmar10_1003	3.336e-103	352.0	COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,43XD9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	MU	CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin)	bepC	-	-	ko:K12340	ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133	M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko02044	1.B.17,2.A.6.2	-	-	OEP
DYD3_k127_425198_1	1479238.JQMZ01000001_gene2046	2.482e-71	252.0	COG2518@1|root,COG2518@2|Bacteria,1RD6S@1224|Proteobacteria,2U704@28211|Alphaproteobacteria,43XNP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG2518 Protein-L-isoaspartate carboxylmethyltransferase	pcm2	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	PCMT
DYD3_k127_425198_3	234267.Acid_1667	1.51e-16	82.0	COG1961@1|root,COG1961@2|Bacteria,3Y3F6@57723|Acidobacteria	57723|Acidobacteria	L	Recombinase	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_4286325_2	1354722.JQLS01000008_gene2758	1.706e-37	142.0	COG3293@1|root,COG3293@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2
DYD3_k127_4286325_0	314254.OA2633_01691	4.699e-239	767.0	COG2866@1|root,COG2866@2|Bacteria,1N9W9@1224|Proteobacteria,2U2SA@28211|Alphaproteobacteria,43WX9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Zinc carboxypeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M14
DYD3_k127_4286325_1	1161401.ASJA01000008_gene1723	1.79e-170	546.0	COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2UQAG@28211|Alphaproteobacteria,43WBH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	ABC transporter	atm1	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_4298880_3	1245469.S58_26680	2.048e-54	217.0	28NKC@1|root,2ZBM7@2|Bacteria,1MWMY@1224|Proteobacteria,2TU05@28211|Alphaproteobacteria,3JS0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08580	-	-	-	-	-	-	-	-	-	-	-	Endostatin
DYD3_k127_4298880_5	1161401.ASJA01000005_gene2514	5.448e-23	115.0	COG0457@1|root,COG0457@2|Bacteria,1MVCA@1224|Proteobacteria,2UAC1@28211|Alphaproteobacteria,43WT7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_7,TPR_8
DYD3_k127_4298880_7	1500894.JQNN01000001_gene2735	2.64e-20	106.0	COG4219@1|root,COG4219@2|Bacteria,1R3YH@1224|Proteobacteria	1224|Proteobacteria	KT	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M56,TonB_C
DYD3_k127_4298880_4	190650.CC_1510	3.18e-25	109.0	COG3682@1|root,COG3682@2|Bacteria,1RHX7@1224|Proteobacteria,2UFP6@28211|Alphaproteobacteria,2KHAX@204458|Caulobacterales	204458|Caulobacterales	K	Penicillinase repressor	-	-	-	-	-	-	-	-	-	-	-	-	Penicillinase_R
DYD3_k127_4298880_6	1121033.AUCF01000006_gene4280	2.284e-21	99.0	2D1BA@1|root,32TAA@2|Bacteria,1RJQD@1224|Proteobacteria,2U780@28211|Alphaproteobacteria,2JTH2@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4298880_0	93220.LV28_15510	3.739e-160	530.0	COG0028@1|root,COG0028@2|Bacteria,1MX6Q@1224|Proteobacteria,2VIGQ@28216|Betaproteobacteria,1K395@119060|Burkholderiaceae	28216|Betaproteobacteria	EH	Belongs to the TPP enzyme family	mdlC	-	4.1.1.7	ko:K01576	ko00627,ko01120,map00627,map01120	-	R01764,R02672	RC00595	ko00000,ko00001,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_4298880_8	670307.HYPDE_32318	3.262e-15	78.0	2EIKT@1|root,33CC3@2|Bacteria,1N2RM@1224|Proteobacteria,2UD5M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4298880_9	595536.ADVE02000001_gene2064	7.156e-08	57.0	2EJ3S@1|root,33CV1@2|Bacteria,1PUNS@1224|Proteobacteria,2V68J@28211|Alphaproteobacteria,3714J@31993|Methylocystaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4298880_2	627192.SLG_31390	3.796e-65	240.0	COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,2UA2F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	ankyrin repeat	-	-	-	ko:K15503	-	-	-	-	ko00000,ko01009,ko03400	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5
DYD3_k127_4308097_0	639283.Snov_1961	8.972e-33	142.0	COG3598@1|root,COG3598@2|Bacteria,1R4V4@1224|Proteobacteria,2TTYV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	AAA domain	-	-	-	ko:K07505	-	-	-	-	ko00000	-	-	-	AAA_25,Prim-Pol
DYD3_k127_4311831_25	1121949.AQXT01000002_gene743	4.83e-26	120.0	COG4067@1|root,COG4067@2|Bacteria,1N7Y2@1224|Proteobacteria,2VG0M@28211|Alphaproteobacteria,44058@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Putative ATP-dependant zinc protease	-	-	-	-	-	-	-	-	-	-	-	-	Zn_protease
DYD3_k127_4311831_7	1121949.AQXT01000002_gene742	2.628e-125	419.0	COG1305@1|root,COG1305@2|Bacteria,1MVV3@1224|Proteobacteria,2UIDH@28211|Alphaproteobacteria,43Z9Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	7 transmembrane helices usually fused to an inactive transglutaminase	-	-	-	-	-	-	-	-	-	-	-	-	7TM_transglut,Transglut_i_TM
DYD3_k127_4311831_11	1121949.AQXT01000002_gene741	3.702e-110	383.0	COG0189@1|root,COG0189@2|Bacteria,1MVDU@1224|Proteobacteria,2U972@28211|Alphaproteobacteria,43ZK9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	HJ	Sugar-transfer associated ATP-grasp	-	-	-	-	-	-	-	-	-	-	-	-	ATPgrasp_ST
DYD3_k127_4311831_10	314254.OA2633_01926	1.379e-112	390.0	COG1024@1|root,COG1024@2|Bacteria,1MU0B@1224|Proteobacteria,2TQW3@28211|Alphaproteobacteria,43W71@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	hibch	-	3.1.2.4,4.2.1.17	ko:K01692,ko:K05605	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01200,map01212	M00013,M00032,M00087	R03026,R03045,R03158,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05064,R05595,R06411,R06412,R06942,R08093	RC00004,RC00014,RC00137,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_2
DYD3_k127_4311831_14	1279038.KB907337_gene469	1.096e-93	329.0	COG2084@1|root,COG2084@2|Bacteria,1RA7F@1224|Proteobacteria,2UVAZ@28211|Alphaproteobacteria,2JR0K@204441|Rhodospirillales	204441|Rhodospirillales	I	Belongs to the 3-hydroxyisobutyrate dehydrogenase family	mmsB	-	1.1.1.31	ko:K00020	ko00280,ko01100,map00280,map01100	-	R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
DYD3_k127_4311831_19	1382303.JPOM01000001_gene819	7.03e-52	188.0	COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2U73Z@28211|Alphaproteobacteria,2KGQE@204458|Caulobacterales	204458|Caulobacterales	K	Belongs to the P(II) protein family	-	-	-	ko:K04751	ko02020,map02020	-	-	-	ko00000,ko00001	-	-	-	P-II
DYD3_k127_4311831_5	1382303.JPOM01000001_gene822	2.813e-134	446.0	COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,2TT58@28211|Alphaproteobacteria,2KFFE@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	nnrD	-	-	-	-	-	-	-	-	-	-	-	Carb_kinase,YjeF_N
DYD3_k127_4311831_1	1161401.ASJA01000002_gene2606	0.0	1061.0	COG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,43WEX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	malic enzyme	tme	-	1.1.1.40	ko:K00029	ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200	M00169,M00172	R00216	RC00105	ko00000,ko00001,ko00002,ko01000	-	-	-	Malic_M,PTA_PTB,malic
DYD3_k127_4311831_8	1479238.JQMZ01000001_gene1675	1.213e-122	410.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2TS4Z@28211|Alphaproteobacteria,43X51@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	MatE	-	-	-	-	-	-	-	-	-	-	-	-	MatE
DYD3_k127_4311831_4	1280946.HY29_08245	3.658e-152	494.0	COG0544@1|root,COG0544@2|Bacteria,1MUJP@1224|Proteobacteria,2TS8W@28211|Alphaproteobacteria,43WZK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase	tig	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K03545	-	-	-	-	ko00000	-	-	-	FKBP_C,Trigger_C,Trigger_N
DYD3_k127_4311831_12	509190.Cseg_2251	2.033e-106	350.0	COG0740@1|root,COG0740@2|Bacteria,1MV46@1224|Proteobacteria,2TR5M@28211|Alphaproteobacteria,2KFYR@204458|Caulobacterales	204458|Caulobacterales	O	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	clpP	-	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	CLP_protease
DYD3_k127_4311831_3	1121123.AUAO01000003_gene2207	3.299e-226	706.0	COG1219@1|root,COG1219@2|Bacteria,1MVQK@1224|Proteobacteria,2TS3R@28211|Alphaproteobacteria,2KF7Z@204458|Caulobacterales	204458|Caulobacterales	O	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP	clpX	-	-	ko:K03544	ko04112,map04112	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA_2,ClpB_D2-small,zf-C4_ClpX
DYD3_k127_4311831_0	1161401.ASJA01000007_gene2050	0.0	1178.0	COG0466@1|root,COG0466@2|Bacteria,1MUV2@1224|Proteobacteria,2TR4E@28211|Alphaproteobacteria,43W9S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner	lon	-	3.4.21.53	ko:K01338	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	AAA,LON_substr_bdg,Lon_C
DYD3_k127_4311831_13	536019.Mesop_1855	1.02e-95	325.0	COG1028@1|root,COG1028@2|Bacteria,1MU3W@1224|Proteobacteria,2TT5X@28211|Alphaproteobacteria,43IC2@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	IQ	Short chain dehydrogenase	linC	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_4311831_18	1461694.ATO9_19495	8.297e-55	204.0	COG3544@1|root,COG3544@2|Bacteria,1MVU8@1224|Proteobacteria,2TSBT@28211|Alphaproteobacteria,2PF9I@252301|Oceanicola	28211|Alphaproteobacteria	S	Domain of unknown function (DUF305)	-	-	-	-	-	-	-	-	-	-	-	-	DUF305
DYD3_k127_4311831_29	857087.Metme_2746	9.413e-15	79.0	COG3324@1|root,COG3324@2|Bacteria,1R0QX@1224|Proteobacteria	1224|Proteobacteria	E	translation initiation factor activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4311831_36	326442.PSHAa1958	0.0003638	46.0	COG2304@1|root,COG2304@2|Bacteria,1MVJ2@1224|Proteobacteria,1RMUF@1236|Gammaproteobacteria,2Q0HJ@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	S	von willebrand factor, type A	-	-	-	-	-	-	-	-	-	-	-	-	VWA,VWA_3
DYD3_k127_4311831_16	1537715.JQFJ01000002_gene2503	1.244e-76	267.0	COG0491@1|root,COG0491@2|Bacteria,1PHBX@1224|Proteobacteria,2TVDN@28211|Alphaproteobacteria,2K2S7@204457|Sphingomonadales	204457|Sphingomonadales	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4311831_9	394221.Mmar10_1920	2.066e-113	373.0	COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,2TR5J@28211|Alphaproteobacteria,43X4C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	exodeoxyribonuclease III	xth	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
DYD3_k127_4311831_6	1123503.KB908056_gene2269	1.067e-132	430.0	COG0502@1|root,COG0502@2|Bacteria,1MVFF@1224|Proteobacteria,2TSD6@28211|Alphaproteobacteria,2KFAT@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism	bioB	-	2.8.1.6	ko:K01012	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R01078	RC00441	ko00000,ko00001,ko00002,ko01000	-	-	-	BATS,Radical_SAM
DYD3_k127_4311831_15	1035191.HMPREF0185_02067	2.045e-91	313.0	COG1432@1|root,COG1432@2|Bacteria,1MX5C@1224|Proteobacteria,2TRE6@28211|Alphaproteobacteria,2KIX6@204458|Caulobacterales	204458|Caulobacterales	S	NYN domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN,OST-HTH
DYD3_k127_4311831_23	1007103.AFHW01000035_gene1940	1.381e-31	130.0	COG5552@1|root,COG5552@2|Bacteria,1VCIJ@1239|Firmicutes,4HKXG@91061|Bacilli,26Z0F@186822|Paenibacillaceae	91061|Bacilli	S	Uncharacterized conserved protein (DUF2277)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2277
DYD3_k127_4311831_24	366602.Caul_3519	2.628e-29	117.0	COG1476@1|root,COG1476@2|Bacteria,1N7BB@1224|Proteobacteria,2UGNF@28211|Alphaproteobacteria,2KJC1@204458|Caulobacterales	204458|Caulobacterales	K	Helix-turn-helix XRE-family like proteins	-	-	-	ko:K07729	-	-	-	-	ko00000,ko03000	-	-	-	HTH_3
DYD3_k127_4311831_34	1121923.GPUN_0084	9.791e-05	50.0	2EBMG@1|root,335MQ@2|Bacteria,1NGDS@1224|Proteobacteria,1SCZ6@1236|Gammaproteobacteria,4694I@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4311831_17	1479238.JQMZ01000001_gene2040	4.804e-68	245.0	COG0778@1|root,COG0778@2|Bacteria,1PG8V@1224|Proteobacteria,2U59W@28211|Alphaproteobacteria,4410M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Nitroreductase family	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
DYD3_k127_4311831_31	928210.CALU01000046_gene197	2.415e-10	73.0	COG3772@1|root,COG3772@2|Bacteria,1MZJD@1224|Proteobacteria,2U7RQ@28211|Alphaproteobacteria,48UN9@772|Bartonellaceae	28211|Alphaproteobacteria	G	Phage lysozyme	-	-	3.2.1.17	ko:K01185	-	-	-	-	ko00000,ko01000	-	-	-	Phage_lysozyme
DYD3_k127_4311831_32	1415756.JQMY01000001_gene2696	9.24e-08	61.0	COG3755@1|root,COG3755@2|Bacteria,1N2A7@1224|Proteobacteria,2UCG4@28211|Alphaproteobacteria,2PEYH@252301|Oceanicola	28211|Alphaproteobacteria	S	Lysozyme inhibitor LprI	-	-	-	-	-	-	-	-	-	-	-	-	LprI
DYD3_k127_4311831_28	714083.JH370377_gene372	1.404e-19	98.0	COG5001@1|root,COG5001@2|Bacteria,2I763@201174|Actinobacteria,4FTQ8@85023|Microbacteriaceae	201174|Actinobacteria	T	Sensors of blue-light using FAD	-	-	-	-	-	-	-	-	-	-	-	-	BLUF
DYD3_k127_4311831_27	1120999.JONM01000004_gene3522	1.285e-21	99.0	COG1393@1|root,COG1393@2|Bacteria,1MZ4Z@1224|Proteobacteria,2VWVP@28216|Betaproteobacteria,2KS3S@206351|Neisseriales	206351|Neisseriales	C	Psort location Cytoplasmic, score 8.96	arsC	-	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	-	ArsC
DYD3_k127_4311831_20	394221.Mmar10_1733	1.388e-51	188.0	COG2249@1|root,COG2249@2|Bacteria,1RA5X@1224|Proteobacteria,2U7JU@28211|Alphaproteobacteria,43Y2R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	NADPH-quinone reductase (modulator of drug activity B)	-	-	-	-	-	-	-	-	-	-	-	-	Flavodoxin_2
DYD3_k127_4311831_21	118168.MC7420_5313	4.585e-50	187.0	COG0412@1|root,COG0412@2|Bacteria,1G4HV@1117|Cyanobacteria,1HETS@1150|Oscillatoriales	1117|Cyanobacteria	Q	Dienelactone hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	DLH
DYD3_k127_4311831_22	1292034.OR37_02029	5.009e-43	172.0	COG5483@1|root,COG5483@2|Bacteria,1N3XQ@1224|Proteobacteria,2UCV7@28211|Alphaproteobacteria,2KGP0@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function, DUF488	-	-	-	-	-	-	-	-	-	-	-	-	DUF488
DYD3_k127_4311831_33	1187851.A33M_0532	3.14e-05	48.0	COG4636@1|root,COG4636@2|Bacteria,1RH5Y@1224|Proteobacteria,2VESF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Putative restriction endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	Uma2
DYD3_k127_4311831_30	679926.Mpet_0214	3.036e-11	71.0	COG2361@1|root,arCOG05024@2157|Archaea	2157|Archaea	S	Protein of unknown function DUF86	-	-	-	-	-	-	-	-	-	-	-	-	DUF86
DYD3_k127_4311831_26	670487.Ocepr_2045	9.343e-24	105.0	COG1669@1|root,COG1669@2|Bacteria,1WKNV@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	L	PFAM DNA polymerase beta domain protein region	-	-	-	ko:K07075	-	-	-	-	ko00000	-	-	-	NTP_transf_2
DYD3_k127_4311831_2	1479238.JQMZ01000001_gene2011	9.711e-258	808.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2TRA0@28211|Alphaproteobacteria,43WCQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)	mccB	-	6.4.1.4	ko:K01969	ko00280,ko01100,map00280,map01100	M00036	R04138	RC00367,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
DYD3_k127_4312395_0	1282360.ABAC460_02350	0.0	1778.0	COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,2TRHQ@28211|Alphaproteobacteria,2KFYP@204458|Caulobacterales	204458|Caulobacterales	E	Glutamate synthase	-	-	1.4.1.13,1.4.1.14	ko:K00265	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	-	R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000	-	-	-	GATase_2,GXGXG,Glu_syn_central,Glu_synthase
DYD3_k127_4312395_1	190650.CC_3606	2.918e-198	629.0	COG0493@1|root,COG0493@2|Bacteria,1MU2H@1224|Proteobacteria,2TSE2@28211|Alphaproteobacteria,2KFIX@204458|Caulobacterales	204458|Caulobacterales	E	glutamate synthase, small subunit	-	-	1.4.1.13,1.4.1.14	ko:K00266	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	-	R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000	-	-	-	Fer4_20,Pyr_redox_2
DYD3_k127_4312395_5	402881.Plav_1269	3.236e-65	227.0	COG1247@1|root,COG1247@2|Bacteria,1RDHN@1224|Proteobacteria,2U98I@28211|Alphaproteobacteria,1JPC0@119043|Rhodobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	pat	-	2.3.1.183	ko:K03823	ko00440,ko01130,map00440,map01130	-	R08871,R08938	RC00004,RC00064	ko00000,ko00001,ko01000	-	-	-	Acetyltransf_4
DYD3_k127_4312395_3	420324.KI912064_gene6645	6.696e-103	340.0	COG0426@1|root,COG0426@2|Bacteria,1MXIE@1224|Proteobacteria,2U3GM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4312395_6	114615.BRADO5565	1.223e-45	188.0	COG1487@1|root,COG1487@2|Bacteria,1MZQC@1224|Proteobacteria,2U73E@28211|Alphaproteobacteria,3JZ6X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	vapC	-	-	ko:K07062	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PIN
DYD3_k127_4312395_4	1121124.JNIX01000008_gene2547	1.993e-89	307.0	COG2021@1|root,COG2021@2|Bacteria,1PNUE@1224|Proteobacteria,2V1DE@28211|Alphaproteobacteria,2KGUU@204458|Caulobacterales	204458|Caulobacterales	E	Belongs to the AB hydrolase superfamily. MetX family	-	-	2.3.1.31	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	-	R01776	RC00004,RC00041	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_4312395_2	1161401.ASJA01000022_gene114	4.618e-138	449.0	COG0626@1|root,COG0626@2|Bacteria,1MU57@1224|Proteobacteria,2TW14@28211|Alphaproteobacteria,43W9G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	metB	-	2.5.1.48	ko:K01739	ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017	R00999,R01288,R02508,R03217,R03260,R04944,R04945,R04946	RC00020,RC00056,RC00069,RC00420,RC02848,RC02866	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
DYD3_k127_4312395_7	172088.AUGA01000080_gene5353	8.702e-05	45.0	COG3335@1|root,COG3335@2|Bacteria,1MZ39@1224|Proteobacteria,2UCFH@28211|Alphaproteobacteria,3K69M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
DYD3_k127_4312754_6	1123059.KB823012_gene2116	1.769e-97	326.0	COG0702@1|root,COG0702@2|Bacteria,1MW54@1224|Proteobacteria,2TQMD@28211|Alphaproteobacteria,43W5E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	GM	NADH-quinone oxidoreductase	MA20_24380	-	1.6.5.3,1.6.99.3	ko:K00329,ko:K00356	ko00190,map00190	-	R11945	RC00061	ko00000,ko00001,ko01000	-	-	-	3Beta_HSD,Epimerase,NAD_binding_10,RmlD_sub_bind
DYD3_k127_4312754_15	1333507.AUTQ01000193_gene4528	2.021e-37	154.0	COG0491@1|root,COG0491@2|Bacteria,1PBS8@1224|Proteobacteria,1RS4P@1236|Gammaproteobacteria,2Q09T@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4312754_11	1122613.ATUP01000001_gene1474	1.323e-73	257.0	COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,2TSUR@28211|Alphaproteobacteria,43WTA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin	uppP	GO:0008150,GO:0042221,GO:0046677,GO:0050896	3.6.1.27	ko:K06153	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	BacA
DYD3_k127_4312754_18	627192.SLG_26310	9.575e-28	129.0	COG3631@1|root,COG3631@2|Bacteria,1NI1R@1224|Proteobacteria	1224|Proteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_4312754_17	627192.SLG_26310	1.932e-30	138.0	COG3631@1|root,COG3631@2|Bacteria,1NI1R@1224|Proteobacteria	1224|Proteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_4312754_20	247634.GPB2148_2966	2.989e-08	66.0	COG3631@1|root,COG3631@2|Bacteria,1RH7J@1224|Proteobacteria,1STMU@1236|Gammaproteobacteria,1JBFN@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_4312754_21	1261545.MBE-HAL_2365	2.559e-06	60.0	2DZB5@1|root,2N5Y4@2157|Archaea,2Y0Z1@28890|Euryarchaeota,23XSA@183963|Halobacteria	183963|Halobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_4312754_5	1161401.ASJA01000013_gene717	2.292e-106	357.0	COG0053@1|root,COG0053@2|Bacteria,1MUDS@1224|Proteobacteria,2TT78@28211|Alphaproteobacteria,43X96@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family	fieF	-	-	ko:K13283	-	-	-	-	ko00000,ko02000	2.A.4.7.1	-	-	Cation_efflux,ZT_dimer
DYD3_k127_4312754_3	234267.Acid_6848	3.471e-151	500.0	COG0028@1|root,COG0028@2|Bacteria	2|Bacteria	EH	Belongs to the TPP enzyme family	mdlC	-	2.2.1.6,4.1.1.7	ko:K01576,ko:K01652	ko00290,ko00627,ko00650,ko00660,ko00770,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00290,map00627,map00650,map00660,map00770,map01100,map01110,map01120,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R01764,R02672,R03050,R04672,R04673,R08648	RC00027,RC00106,RC00595,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_4312754_13	1120792.JAFV01000001_gene3124	2.749e-58	212.0	COG2304@1|root,COG2304@2|Bacteria,1PH4N@1224|Proteobacteria,2TQTJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	von Willebrand factor, type A	MA20_07505	-	-	-	-	-	-	-	-	-	-	-	DUF1194
DYD3_k127_4312754_19	685778.AORL01000019_gene1764	6.394e-16	84.0	COG1917@1|root,COG1917@2|Bacteria,1RGZB@1224|Proteobacteria,2V03Y@28211|Alphaproteobacteria,2KB2Q@204457|Sphingomonadales	204457|Sphingomonadales	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_4312754_10	1178482.BJB45_16645	1.035e-73	262.0	COG0526@1|root,COG0526@2|Bacteria,1NCXZ@1224|Proteobacteria,1RZ3D@1236|Gammaproteobacteria,1XR4D@135619|Oceanospirillales	135619|Oceanospirillales	M	Thioredoxin-like	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA
DYD3_k127_4312754_1	234267.Acid_4918	6.582e-189	610.0	COG4993@1|root,COG4993@2|Bacteria,3Y6BH@57723|Acidobacteria	57723|Acidobacteria	G	PQQ enzyme repeat	-	-	1.1.5.2	ko:K00117	ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130	-	R06620	RC00066	ko00000,ko00001,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_4312754_2	1280948.HY36_01350	3.962e-163	522.0	COG1600@1|root,COG1600@2|Bacteria,1MV1H@1224|Proteobacteria,2TR5E@28211|Alphaproteobacteria,43W64@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)	queG	GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	1.17.99.6	ko:K18979	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DUF1730,Fer4_16,HEAT_2
DYD3_k127_4312754_7	551789.ATVJ01000003_gene142	1.11e-80	277.0	COG0744@1|root,COG0744@2|Bacteria,1RDAQ@1224|Proteobacteria,2U0NP@28211|Alphaproteobacteria,43W9C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors	mtgA	-	2.4.1.129	ko:K03814	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly
DYD3_k127_4312754_14	1161401.ASJA01000013_gene761	2.499e-42	165.0	COG0457@1|root,COG0457@2|Bacteria,1RK4Q@1224|Proteobacteria,2UBBB@28211|Alphaproteobacteria,43Y4X@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_19,TPR_9
DYD3_k127_4312754_12	1479238.JQMZ01000001_gene737	2.672e-65	233.0	COG0451@1|root,COG0451@2|Bacteria,1MWVJ@1224|Proteobacteria,2TRDY@28211|Alphaproteobacteria,43XSX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	GM	COG0451 Nucleoside-diphosphate-sugar epimerases	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
DYD3_k127_4312754_8	1161401.ASJA01000013_gene762	4.389e-79	289.0	COG1073@1|root,COG1073@2|Bacteria,1MX88@1224|Proteobacteria,2TSRE@28211|Alphaproteobacteria,43XFG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	MA20_24420	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	Abhydrolase_6,Hydrolase_4
DYD3_k127_4312754_4	1292034.OR37_03534	4.657e-108	379.0	COG0438@1|root,COG0438@2|Bacteria,1MUTA@1224|Proteobacteria,2TSPN@28211|Alphaproteobacteria,2KFUU@204458|Caulobacterales	204458|Caulobacterales	M	glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_4312754_16	1449049.JONW01000008_gene405	7.381e-35	146.0	COG0859@1|root,COG0859@2|Bacteria,1MXA2@1224|Proteobacteria,2TUTN@28211|Alphaproteobacteria,2KG40@204458|Caulobacterales	204458|Caulobacterales	M	Glycosyltransferase family 9 (heptosyltransferase)	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_9
DYD3_k127_4312754_9	394221.Mmar10_0123	9.26e-76	258.0	COG0290@1|root,COG0290@2|Bacteria,1RDD2@1224|Proteobacteria,2U58Z@28211|Alphaproteobacteria,43XEN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins	infC	GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008	-	ko:K02520	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	IF3_C,IF3_N
DYD3_k127_4312754_0	911045.PSE_4866	0.0	1020.0	COG1038@1|root,COG1038@2|Bacteria,1NW9R@1224|Proteobacteria,2TQXU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second	pyc	-	6.4.1.1	ko:K01958	ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230	M00173	R00344	RC00040,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,HMGL-like,PYC_OADA
DYD3_k127_4315988_1	1479238.JQMZ01000001_gene2528	1.062e-52	191.0	COG5328@1|root,COG5328@2|Bacteria,1RA93@1224|Proteobacteria,2U741@28211|Alphaproteobacteria,43XQC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0262 family	MA20_21090	-	-	-	-	-	-	-	-	-	-	-	UPF0262
DYD3_k127_4315988_3	1161401.ASJA01000004_gene2173	2.358e-33	140.0	COG0394@1|root,COG0394@2|Bacteria,1RANV@1224|Proteobacteria,2U5EE@28211|Alphaproteobacteria,43YYE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Low molecular weight phosphatase family	MA20_21085	-	1.20.4.1,3.1.3.48	ko:K01104,ko:K03741	-	-	-	-	ko00000,ko01000	-	-	-	LMWPc
DYD3_k127_4315988_2	1479238.JQMZ01000001_gene2526	1.095e-35	136.0	COG0361@1|root,COG0361@2|Bacteria,1MZFU@1224|Proteobacteria,2UBRU@28211|Alphaproteobacteria,4401M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Translation initiation factor 1A / IF-1	infA	-	-	ko:K02518	-	-	-	-	ko00000,ko03012	-	-	-	eIF-1a
DYD3_k127_4315988_0	460265.Mnod_3344	8.156e-62	219.0	COG0424@1|root,COG0424@2|Bacteria,1RH6H@1224|Proteobacteria,2TSS5@28211|Alphaproteobacteria,1JSGI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	D	TIGRFAM maf protein	maf	-	-	ko:K06287	-	-	-	-	ko00000	-	-	-	Maf
DYD3_k127_4315988_4	394221.Mmar10_1132	2.378e-20	96.0	COG1530@1|root,COG1530@2|Bacteria,1RG55@1224|Proteobacteria,2U8TG@28211|Alphaproteobacteria,43YE4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	COG1530 Ribonucleases G and E	-	-	-	-	-	-	-	-	-	-	-	-	RNase_E_G
DYD3_k127_4320358_7	555793.WSK_1442	1.531e-16	87.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4320358_9	555793.WSK_1442	4.312e-13	81.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4320358_11	1335760.ASTG01000003_gene1495	6.313e-11	74.0	28MSC@1|root,2ZB0S@2|Bacteria,1NG2A@1224|Proteobacteria,2U8EJ@28211|Alphaproteobacteria,2KCBM@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4320358_8	555793.WSK_1442	1.783e-14	87.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4320358_3	1197906.CAJQ02000010_gene3462	4.503e-59	206.0	COG0640@1|root,COG0640@2|Bacteria,1RGYC@1224|Proteobacteria,2UA77@28211|Alphaproteobacteria,3JYV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	MA20_01010	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
DYD3_k127_4320358_1	1038859.AXAU01000001_gene3664	4.444e-74	256.0	COG3832@1|root,COG3832@2|Bacteria,1RA7N@1224|Proteobacteria,2U5AM@28211|Alphaproteobacteria,3JY0Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	MA20_01005	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_4320358_2	266835.14022818	1.778e-70	247.0	COG5649@1|root,COG5649@2|Bacteria,1RDDG@1224|Proteobacteria,2U73S@28211|Alphaproteobacteria,43K9N@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DU1801)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
DYD3_k127_4320358_6	247633.GP2143_18131	3.135e-30	134.0	2C42J@1|root,3359Y@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4320358_0	247633.GP2143_17791	8.177e-75	261.0	28MSC@1|root,2ZB0S@2|Bacteria,1R8PG@1224|Proteobacteria,1SNXF@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4320358_5	247633.GP2143_17796	3.411e-46	185.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,1ST6N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4320358_10	247639.MGP2080_01801	4.025e-11	76.0	COG3450@1|root,COG3450@2|Bacteria,1N1GM@1224|Proteobacteria,1SIWX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	enzyme of the cupin superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_3
DYD3_k127_4320358_4	1041146.ATZB01000020_gene3744	2.383e-50	191.0	COG5649@1|root,COG5649@2|Bacteria,1RGY3@1224|Proteobacteria,2U9AG@28211|Alphaproteobacteria,4BF17@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DU1801)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
DYD3_k127_4345300_4	935567.JAES01000007_gene1860	1.029e-15	89.0	COG5616@1|root,COG5616@2|Bacteria,1NSKC@1224|Proteobacteria,1T49A@1236|Gammaproteobacteria,1XDC3@135614|Xanthomonadales	135614|Xanthomonadales	S	cAMP biosynthetic process	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4345300_0	228405.HNE_2705	1.032e-265	826.0	COG1866@1|root,COG1866@2|Bacteria,1MWXN@1224|Proteobacteria,2TRC4@28211|Alphaproteobacteria,43WYP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA	pckA	GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576	4.1.1.49	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00170	R00341	RC00002,RC02741	ko00000,ko00001,ko00002,ko01000	-	-	-	PEPCK_ATP
DYD3_k127_4345300_3	1121123.AUAO01000001_gene1091	1.321e-40	157.0	COG0824@1|root,COG0824@2|Bacteria,1MZH6@1224|Proteobacteria,2UBYM@28211|Alphaproteobacteria,2KGU5@204458|Caulobacterales	204458|Caulobacterales	S	Tol-pal system-associated acyl-CoA thioesterase	-	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT
DYD3_k127_4345300_1	1161401.ASJA01000003_gene2898	5.962e-80	276.0	COG0811@1|root,COG0811@2|Bacteria,1NCWW@1224|Proteobacteria,2TQXQ@28211|Alphaproteobacteria,43XT3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	COG0811 Biopolymer transport proteins	tolQ	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944	-	ko:K03562	ko01120,map01120	-	-	-	ko00000,ko02000	1.A.30.2.2	-	-	MotA_ExbB
DYD3_k127_4345300_2	394221.Mmar10_2418	3.569e-42	162.0	COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,2UA46@28211|Alphaproteobacteria,43YA5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	ExbD TolR family transport energizing protein	tolR	-	-	ko:K03559,ko:K03560	-	-	-	-	ko00000,ko02000	1.A.30.2.1,1.A.30.2.2	-	-	ExbD
DYD3_k127_4345300_5	1122613.ATUP01000001_gene942	1.824e-06	53.0	COG3266@1|root,COG3266@2|Bacteria,1PZDQ@1224|Proteobacteria,2U2MW@28211|Alphaproteobacteria,43Y6B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Cell division and transport-associated protein TolA	tolA	-	-	ko:K03646	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	-
DYD3_k127_4374175_17	593750.Metfor_2194	2.087e-16	84.0	arCOG02348@1|root,arCOG02352@1|root,arCOG04001@1|root,arCOG06940@1|root,arCOG02348@2157|Archaea,arCOG02352@2157|Archaea,arCOG04001@2157|Archaea,arCOG06940@2157|Archaea	2157|Archaea	T	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	-	-	-	-	-	-	-	-	-	-	-	-	BAT,GAF_2,HATPase_c,HTH_10,HisKA_2,PAS,PAS_3,PAS_4,PAS_8,PAS_9,Response_reg
DYD3_k127_4374175_10	1161401.ASJA01000019_gene1149	3.073e-81	275.0	COG0194@1|root,COG0194@2|Bacteria,1MW92@1224|Proteobacteria,2TSCQ@28211|Alphaproteobacteria,43WHX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Essential for recycling GMP and indirectly, cGMP	gmk	GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657	2.7.4.8	ko:K00942	ko00230,ko01100,map00230,map01100	M00050	R00332,R02090	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_kin
DYD3_k127_4374175_11	394221.Mmar10_1219	9.469e-81	280.0	COG1561@1|root,COG1561@2|Bacteria,1MWRA@1224|Proteobacteria,2TS81@28211|Alphaproteobacteria,43XRQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	stress-induced protein	yicC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	DUF1732,YicC_N
DYD3_k127_4374175_8	1122613.ATUP01000002_gene2521	7.027e-87	316.0	COG1559@1|root,COG1559@2|Bacteria,1MUQF@1224|Proteobacteria,2TR89@28211|Alphaproteobacteria,43WJG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	mltG	-	-	ko:K07082	-	-	-	-	ko00000	-	-	-	YceG
DYD3_k127_4374175_0	394221.Mmar10_1217	7.78e-212	664.0	COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2TR32@28211|Alphaproteobacteria,43W9H@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	fabF	GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
DYD3_k127_4374175_14	314254.OA2633_00915	2.638e-35	135.0	COG0236@1|root,COG0236@2|Bacteria,1MZ4P@1224|Proteobacteria,2UBWW@28211|Alphaproteobacteria,43YKR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis	acpP	GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	-	ko:K02078	-	-	-	-	ko00000,ko00001	-	-	-	PP-binding
DYD3_k127_4374175_2	1479238.JQMZ01000001_gene1036	7.963e-114	372.0	COG1028@1|root,COG1028@2|Bacteria,1MU6X@1224|Proteobacteria,2TQZG@28211|Alphaproteobacteria,43WQU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	fabG	GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_4374175_3	1479238.JQMZ01000001_gene1035	8.354e-108	357.0	COG0331@1|root,COG0331@2|Bacteria,1MV6N@1224|Proteobacteria,2TRTT@28211|Alphaproteobacteria,43W6U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	malonyl CoA-acyl carrier protein transacylase	fabD	GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.39	ko:K00645	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	M00082	R01626,R11671	RC00004,RC00039,RC02727	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyl_transf_1
DYD3_k127_4374175_4	614083.AWQR01000022_gene106	2.104e-107	360.0	COG2159@1|root,COG2159@2|Bacteria,1MXI7@1224|Proteobacteria,2VP80@28216|Betaproteobacteria,4ADEX@80864|Comamonadaceae	28216|Betaproteobacteria	S	Amidohydrolase	-	-	4.1.1.103,4.1.1.46	ko:K07045,ko:K14333,ko:K20941	ko00362,ko00627,ko01120,map00362,map00627,map01120	-	R00821,R11353	RC00390,RC00569	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
DYD3_k127_4374175_13	1101192.KB910516_gene2503	9.551e-41	154.0	COG0360@1|root,COG0360@2|Bacteria,1RH82@1224|Proteobacteria,2U767@28211|Alphaproteobacteria,1JR2B@119045|Methylobacteriaceae	28211|Alphaproteobacteria	J	Binds together with S18 to 16S ribosomal RNA	rpsF	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904	-	ko:K02990	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S6
DYD3_k127_4374175_15	394221.Mmar10_1211	3.042e-34	133.0	COG0238@1|root,COG0238@2|Bacteria,1MZ8U@1224|Proteobacteria,2UC13@28211|Alphaproteobacteria,43Y83@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	rpsR	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02963	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S18
DYD3_k127_4374175_12	394221.Mmar10_1210	1.091e-60	219.0	COG0359@1|root,COG0359@2|Bacteria,1RD0R@1224|Proteobacteria,2TSC9@28211|Alphaproteobacteria,43XMU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Binds to the 23S rRNA	rplI	-	-	ko:K02939	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L9_C,Ribosomal_L9_N
DYD3_k127_4374175_1	1382303.JPOM01000001_gene1023	2.461e-181	584.0	COG0305@1|root,COG0305@2|Bacteria,1MUG9@1224|Proteobacteria,2TSF9@28211|Alphaproteobacteria,2KFUP@204458|Caulobacterales	204458|Caulobacterales	L	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	-	-	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB,DnaB_C
DYD3_k127_4374175_7	1382303.JPOM01000001_gene1022	2.763e-90	327.0	COG0787@1|root,COG0787@2|Bacteria,1MV0Q@1224|Proteobacteria,2TQKD@28211|Alphaproteobacteria,2KFTG@204458|Caulobacterales	204458|Caulobacterales	E	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids	alr	-	5.1.1.1	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502	-	R00401	RC00285	ko00000,ko00001,ko01000,ko01011	-	-	-	Ala_racemase_C,Ala_racemase_N
DYD3_k127_4374175_6	1382303.JPOM01000001_gene1021	1.514e-100	340.0	COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2TSGS@28211|Alphaproteobacteria,2KG0B@204458|Caulobacterales	204458|Caulobacterales	Q	Permease MlaE	-	-	-	ko:K02066	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaE
DYD3_k127_4374175_5	414684.RC1_1580	3.673e-104	359.0	COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2TR2I@28211|Alphaproteobacteria,2JQ66@204441|Rhodospirillales	204441|Rhodospirillales	Q	COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component	mkl	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
DYD3_k127_4374175_18	1207055.C100_09950	5.654e-14	76.0	COG3668@1|root,COG3668@2|Bacteria,1PN2C@1224|Proteobacteria,2UKT2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_4374175_16	391600.ABRU01000054_gene611	8.817e-17	84.0	COG3609@1|root,COG3609@2|Bacteria,1N7IM@1224|Proteobacteria,2UF5D@28211|Alphaproteobacteria,2KH8H@204458|Caulobacterales	204458|Caulobacterales	K	Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_4374175_9	509190.Cseg_0642	1.131e-86	297.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSI2@28211|Alphaproteobacteria,2KGM9@204458|Caulobacterales	204458|Caulobacterales	V	AAA domain, putative AbiEii toxin, Type IV TA system	-	-	-	ko:K20459	ko02010,map02010	M00813	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.124.3,3.A.1.124.4,3.A.1.124.5	-	-	ABC_tran
DYD3_k127_4375162_25	69395.JQLZ01000006_gene2128	3.003e-11	72.0	COG5395@1|root,COG5395@2|Bacteria,1N0CF@1224|Proteobacteria,2UC5R@28211|Alphaproteobacteria,2KGXU@204458|Caulobacterales	204458|Caulobacterales	S	Predicted membrane protein (DUF2306)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2306
DYD3_k127_4375162_14	190650.CC_0330	2.264e-62	224.0	COG3279@1|root,COG3279@2|Bacteria,1N903@1224|Proteobacteria,2U7W7@28211|Alphaproteobacteria,2KGNN@204458|Caulobacterales	204458|Caulobacterales	KT	LytTr DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	LytTR
DYD3_k127_4375162_11	1123060.JONP01000092_gene2366	2.021e-82	284.0	COG2207@1|root,COG2207@2|Bacteria,1QKC9@1224|Proteobacteria,2TSD8@28211|Alphaproteobacteria,2JSGK@204441|Rhodospirillales	204441|Rhodospirillales	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
DYD3_k127_4375162_2	1288298.rosmuc_04244	4.629e-250	791.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TWGU@28211|Alphaproteobacteria,46PXQ@74030|Roseovarius	28211|Alphaproteobacteria	C	COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs	-	-	1.17.1.4	ko:K11177	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2,Fer2,Fer2_2
DYD3_k127_4375162_8	1123060.JONP01000092_gene2368	1.896e-139	449.0	COG1319@1|root,COG1319@2|Bacteria,1MVJS@1224|Proteobacteria,2TRAR@28211|Alphaproteobacteria,2JRX7@204441|Rhodospirillales	204441|Rhodospirillales	C	CO dehydrogenase flavoprotein C-terminal domain	-	-	1.17.1.4	ko:K11178	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
DYD3_k127_4375162_13	1123060.JONP01000092_gene2367	8.859e-72	250.0	COG2080@1|root,COG2080@2|Bacteria,1MY3F@1224|Proteobacteria,2TRGH@28211|Alphaproteobacteria,2JSC2@204441|Rhodospirillales	204441|Rhodospirillales	C	[2Fe-2S] binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer2,Fer2_2
DYD3_k127_4375162_12	1134912.AJTV01000001_gene1420	2.516e-77	262.0	COG3260@1|root,COG3260@2|Bacteria,1QUBE@1224|Proteobacteria,2U279@28211|Alphaproteobacteria,36Y9T@31993|Methylocystaceae	28211|Alphaproteobacteria	C	NADH ubiquinone oxidoreductase, 20 Kd subunit	hycG	-	-	-	-	-	-	-	-	-	-	-	Oxidored_q6
DYD3_k127_4375162_6	1380350.JIAP01000010_gene5851	2.879e-219	702.0	COG3261@1|root,COG3262@1|root,COG3261@2|Bacteria,COG3262@2|Bacteria,1QUBF@1224|Proteobacteria,2TRE0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NADH-ubiquinone oxidoreductase chain 49kDa	hycE	-	-	-	-	-	-	-	-	-	-	-	Complex1_30kDa,Complex1_49kDa,NiFeSe_Hases
DYD3_k127_4375162_3	536019.Mesop_2129	2.97e-237	747.0	COG0651@1|root,COG0651@2|Bacteria,1MVBA@1224|Proteobacteria,2TSRU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	CP	PFAM NADH Ubiquinone plastoquinone (complex I)	hyfF	-	-	ko:K12141	-	-	-	-	ko00000,ko01000	-	-	-	Proton_antipo_M
DYD3_k127_4375162_10	1532558.JL39_17395	3.195e-108	353.0	COG4237@1|root,COG4237@2|Bacteria,1NAT8@1224|Proteobacteria,2TUAC@28211|Alphaproteobacteria,4BA7A@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	COG4237 Hydrogenase 4 membrane component (E)	hyfE	-	-	ko:K12140	-	-	-	-	ko00000,ko01000	-	-	-	-
DYD3_k127_4375162_9	536019.Mesop_2131	1.095e-126	436.0	COG0650@1|root,COG0650@2|Bacteria,1MXV5@1224|Proteobacteria,2U0GZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NADH dehydrogenase	hycD	-	-	-	-	-	-	-	-	-	-	-	NADHdh
DYD3_k127_4375162_1	395964.KE386496_gene1805	1.851e-261	822.0	COG0651@1|root,COG0651@2|Bacteria,1MXRW@1224|Proteobacteria,2TZIX@28211|Alphaproteobacteria,3NC92@45404|Beijerinckiaceae	28211|Alphaproteobacteria	CP	Proton-conducting membrane transporter	hyfB	-	-	-	-	-	-	-	-	-	-	-	Proton_antipo_M
DYD3_k127_4375162_19	1298858.AUEL01000022_gene5608	6.324e-31	123.0	COG1396@1|root,COG1396@2|Bacteria,1MZQK@1224|Proteobacteria,2UCAK@28211|Alphaproteobacteria,43KZD@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Helix-turn-helix	MA20_05215	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
DYD3_k127_4375162_0	1192759.AKIB01000129_gene3123	0.0	1036.0	COG1274@1|root,COG1274@2|Bacteria,1MX3C@1224|Proteobacteria,2TUPJ@28211|Alphaproteobacteria,2K2P9@204457|Sphingomonadales	204457|Sphingomonadales	C	Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle	pckG	-	4.1.1.32	ko:K01596	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko03320,ko04068,ko04151,ko04152,ko04910,ko04920,ko04922,ko04931,ko04964,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map03320,map04068,map04151,map04152,map04910,map04920,map04922,map04931,map04964	M00003	R00431,R00726	RC00002,RC02741	ko00000,ko00001,ko00002,ko01000	-	-	-	PEPCK_C,PEPCK_N
DYD3_k127_4375162_17	1192759.AKIB01000129_gene3122	1.973e-36	141.0	COG3620@1|root,COG3620@2|Bacteria,1QZW1@1224|Proteobacteria,2TYFQ@28211|Alphaproteobacteria,2KA7M@204457|Sphingomonadales	204457|Sphingomonadales	K	Helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HTH_31
DYD3_k127_4375162_24	1430440.MGMSRv2_1562	1.27e-12	77.0	COG5349@1|root,COG5349@2|Bacteria,1MZDD@1224|Proteobacteria,2UCM4@28211|Alphaproteobacteria,2JU4P@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF983)	-	-	-	-	-	-	-	-	-	-	-	-	DUF983
DYD3_k127_4375162_16	536019.Mesop_6169	1.072e-47	172.0	COG1813@1|root,COG1813@2|Bacteria,1QVBI@1224|Proteobacteria	1224|Proteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_31
DYD3_k127_4375162_5	536019.Mesop_6168	3.038e-222	694.0	COG3550@1|root,COG3550@2|Bacteria,1N458@1224|Proteobacteria,2TVQF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PFAM HipA domain protein	-	-	2.7.11.1	ko:K07154	-	-	-	-	ko00000,ko01000,ko01001,ko02048	-	-	-	Couple_hipA,HipA_C
DYD3_k127_4375162_4	1121861.KB899943_gene3896	9.957e-234	730.0	COG3118@1|root,COG3118@2|Bacteria,1Q210@1224|Proteobacteria,2TSKE@28211|Alphaproteobacteria,2JSDU@204441|Rhodospirillales	204441|Rhodospirillales	O	belongs to the thioredoxin family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4375162_7	1298858.AUEL01000017_gene2814	3.693e-148	482.0	COG1373@1|root,COG1373@2|Bacteria,1MWBT@1224|Proteobacteria,2U050@28211|Alphaproteobacteria,43I4B@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	AAA domain	-	-	-	ko:K07133	-	-	-	-	ko00000	-	-	-	AAA_14,DUF4143
DYD3_k127_4375162_26	208444.JNYY01000020_gene4510	1.901e-07	54.0	COG2267@1|root,COG2267@2|Bacteria,2GJUE@201174|Actinobacteria,4EBHU@85010|Pseudonocardiales	201174|Actinobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_4375162_18	471857.Svir_24400	1.845e-32	145.0	COG1061@1|root,COG1061@2|Bacteria,2GIU5@201174|Actinobacteria,4DXNM@85010|Pseudonocardiales	201174|Actinobacteria	L	Type III restriction enzyme, res subunit	sdrA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	ResIII
DYD3_k127_4375162_21	1122169.AREN01000022_gene31	8.436e-20	98.0	2A4PC@1|root,30TAF@2|Bacteria,1PD19@1224|Proteobacteria,1SY7Q@1236|Gammaproteobacteria,1JDEN@118969|Legionellales	118969|Legionellales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4375162_15	1122137.AQXF01000003_gene2243	8.725e-62	231.0	28MWZ@1|root,2ZB46@2|Bacteria,1R7K6@1224|Proteobacteria,2U4ZP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4375162_22	1123366.TH3_07262	2.264e-17	94.0	28W9K@1|root,2ZIA4@2|Bacteria,1PAX5@1224|Proteobacteria,2UWZK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4375162_20	1282876.BAOK01000001_gene1585	3.526e-20	103.0	COG4391@1|root,COG4391@2|Bacteria,1MZNK@1224|Proteobacteria,2UD0H@28211|Alphaproteobacteria,4BSNH@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Zinc-finger domain	MA20_32275	-	-	-	-	-	-	-	-	-	-	-	zf-CHCC
DYD3_k127_4375162_23	593750.Metfor_2194	4.363e-14	77.0	arCOG02348@1|root,arCOG02352@1|root,arCOG04001@1|root,arCOG06940@1|root,arCOG02348@2157|Archaea,arCOG02352@2157|Archaea,arCOG04001@2157|Archaea,arCOG06940@2157|Archaea	2157|Archaea	T	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	-	-	-	-	-	-	-	-	-	-	-	-	BAT,GAF_2,HATPase_c,HTH_10,HisKA_2,PAS,PAS_3,PAS_4,PAS_8,PAS_9,Response_reg
DYD3_k127_4401620_0	107635.AZUO01000001_gene945	1.124e-177	570.0	COG1932@1|root,COG1932@2|Bacteria,1MUB5@1224|Proteobacteria,2TSHT@28211|Alphaproteobacteria,36XFP@31993|Methylocystaceae	28211|Alphaproteobacteria	EH	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine	serC	-	2.6.1.52	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	M00020,M00124	R04173,R05085	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_5
DYD3_k127_4401620_3	258594.RPA2979	2.858e-30	121.0	2DNRM@1|root,32YT2@2|Bacteria,1N8BS@1224|Proteobacteria,2UI9R@28211|Alphaproteobacteria,3K0T2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2442)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2442
DYD3_k127_4401620_5	290400.Jann_3434	3.206e-16	80.0	2C5EY@1|root,32YQJ@2|Bacteria,1N8K7@1224|Proteobacteria,2UGJ4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4160)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4160
DYD3_k127_4401620_2	572477.Alvin_0248	1.416e-34	138.0	COG5573@1|root,COG5573@2|Bacteria,1N3BU@1224|Proteobacteria,1SY95@1236|Gammaproteobacteria,1X2IC@135613|Chromatiales	135613|Chromatiales	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_4401620_4	1408418.JNJH01000046_gene1694	7.823e-20	91.0	COG2336@1|root,COG2336@2|Bacteria,1N7H2@1224|Proteobacteria,2UEKP@28211|Alphaproteobacteria,2JXNV@204441|Rhodospirillales	204441|Rhodospirillales	T	SpoVT / AbrB like domain	-	-	-	-	-	-	-	-	-	-	-	-	MazE_antitoxin
DYD3_k127_4401620_1	1123033.ARNF01000071_gene142	3.985e-102	341.0	COG2175@1|root,COG2175@2|Bacteria,1MV5K@1224|Proteobacteria,1RQRU@1236|Gammaproteobacteria,3NSMU@468|Moraxellaceae	1236|Gammaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA family	tauD	-	1.14.11.17	ko:K03119	ko00430,ko00920,map00430,map00920	-	R05320	RC01331	ko00000,ko00001,ko01000	-	-	-	TauD
DYD3_k127_4410949_4	1280944.HY17_17275	1.967e-133	448.0	COG2133@1|root,COG3474@1|root,COG2133@2|Bacteria,COG3474@2|Bacteria,1MV2E@1224|Proteobacteria,2UAVE@28211|Alphaproteobacteria,43ZK2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Glucose / Sorbosone dehydrogenase	-	-	-	ko:K21430	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrom_C,GSDH
DYD3_k127_4410949_6	1123487.KB892843_gene813	7.562e-120	391.0	COG2273@1|root,COG2273@2|Bacteria,1NFHX@1224|Proteobacteria,2VS8Q@28216|Betaproteobacteria	28216|Betaproteobacteria	G	Glycosyl hydrolases family 16	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_16
DYD3_k127_4410949_7	1280944.HY17_17280	9.109e-117	394.0	296U8@1|root,2ZU36@2|Bacteria,1NDYP@1224|Proteobacteria,2UGVE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4410949_13	555793.WSK_2906	4.054e-43	177.0	COG3307@1|root,COG3307@2|Bacteria,1N0EK@1224|Proteobacteria,2UCUX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	PFAM O-Antigen	exoQ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K16567	-	-	-	-	ko00000	-	-	-	Wzy_C
DYD3_k127_4410949_11	1415756.JQMY01000001_gene3641	3.8e-58	214.0	COG1215@1|root,COG1215@2|Bacteria,1RIJ7@1224|Proteobacteria,2TXDT@28211|Alphaproteobacteria,2PEWV@252301|Oceanicola	28211|Alphaproteobacteria	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_4410949_1	392499.Swit_4535	7.948e-164	542.0	COG0438@1|root,COG1216@1|root,COG0438@2|Bacteria,COG1216@2|Bacteria,1N72Z@1224|Proteobacteria,2U5XZ@28211|Alphaproteobacteria,2K5BP@204457|Sphingomonadales	204457|Sphingomonadales	M	Glycosyltransferase like family 2	-	-	-	ko:K16555	-	-	-	-	ko00000,ko01000,ko01003	-	GT2	-	Glycos_transf_2
DYD3_k127_4410949_12	1479238.JQMZ01000001_gene1907	7.928e-51	188.0	COG1596@1|root,COG1596@2|Bacteria,1MXYS@1224|Proteobacteria,2U93S@28211|Alphaproteobacteria,43XT0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG1596 Periplasmic protein involved in polysaccharide export	-	-	-	ko:K01991	ko02026,map02026	-	-	-	ko00000,ko00001,ko02000	1.B.18	-	-	Poly_export,SLBB
DYD3_k127_4410949_3	1122613.ATUP01000001_gene1679	7.402e-135	458.0	COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,1MVI9@1224|Proteobacteria,2TT1Y@28211|Alphaproteobacteria,43X1I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	DM	Chain length determinant family protein	-	-	-	ko:K16554	ko05111,map05111	-	-	-	ko00000,ko00001,ko02000	8.A.3.1	-	-	AAA_31,GNVR,Wzz
DYD3_k127_4410949_9	366602.Caul_4806	1.368e-84	293.0	COG0438@1|root,COG0438@2|Bacteria,1PFFZ@1224|Proteobacteria,2U2VG@28211|Alphaproteobacteria,2KFJ1@204458|Caulobacterales	204458|Caulobacterales	M	transferase activity, transferring glycosyl groups	-	-	-	ko:K16558	-	-	-	-	ko00000,ko01000,ko01003	-	-	-	-
DYD3_k127_4410949_8	1287116.X734_17120	3.872e-92	319.0	COG1215@1|root,COG1215@2|Bacteria,1NDPE@1224|Proteobacteria,2TSCT@28211|Alphaproteobacteria,43J7E@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	M	PFAM Glycosyl transferase family 2	exoA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K16557	-	-	-	-	ko00000,ko01000,ko01003	-	GT2	-	Glycos_transf_2
DYD3_k127_4410949_10	366602.Caul_4820	1.286e-66	241.0	COG2148@1|root,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2U7DN@28211|Alphaproteobacteria,2KGAG@204458|Caulobacterales	204458|Caulobacterales	M	Bacterial sugar transferase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_transf
DYD3_k127_4410949_2	366602.Caul_4796	1.557e-137	456.0	COG0382@1|root,COG2246@1|root,COG0382@2|Bacteria,COG2246@2|Bacteria,1MXCM@1224|Proteobacteria,2TS0Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	HAD,UbiA
DYD3_k127_4410949_15	713587.THITH_05525	1.292e-19	102.0	COG2246@1|root,COG2246@2|Bacteria,1N6ST@1224|Proteobacteria,1RWJT@1236|Gammaproteobacteria,1WZAP@135613|Chromatiales	135613|Chromatiales	S	GtrA-like protein	-	-	-	-	-	-	-	-	-	-	-	-	GtrA
DYD3_k127_4410949_5	228405.HNE_2076	2.934e-125	405.0	COG1028@1|root,COG1028@2|Bacteria,1PKAZ@1224|Proteobacteria,2TS5J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_06640	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short,adh_short_C2
DYD3_k127_4410949_0	1280954.HPO_12463	1.358e-177	569.0	COG0318@1|root,COG0318@2|Bacteria,1R3S7@1224|Proteobacteria,2TQPW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_06645	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4410949_14	1280954.HPO_12468	3.024e-24	106.0	COG0236@1|root,COG0236@2|Bacteria,1NIHU@1224|Proteobacteria,2UJQF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Phosphopantetheine attachment site	-	-	-	-	-	-	-	-	-	-	-	-	PP-binding
DYD3_k127_4410949_16	1280954.HPO_12473	7.943e-18	86.0	2E53X@1|root,32ZWX@2|Bacteria,1NJTX@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4430063_10	555793.WSK_4047	2.006e-26	122.0	28NHI@1|root,2ZBJA@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4430063_11	136993.KB900627_gene391	3.197e-24	115.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4430063_0	234267.Acid_5827	9.829e-198	646.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5,zf-C4_Topoisom
DYD3_k127_4430063_2	1340493.JNIF01000003_gene3475	1.443e-110	372.0	COG2960@1|root,COG2960@2|Bacteria	2|Bacteria	M	long-chain fatty acid transporting porin activity	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_4430063_4	1340493.JNIF01000003_gene3476	1.289e-69	265.0	COG0666@1|root,COG0666@2|Bacteria	2|Bacteria	G	response to abiotic stimulus	moxJ	-	-	ko:K06867	-	-	-	-	ko00000	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5,SBP_bac_3
DYD3_k127_4430063_6	1280952.HJA_04822	2.879e-54	199.0	COG0783@1|root,COG0783@2|Bacteria,1RAC5@1224|Proteobacteria,2U5Q5@28211|Alphaproteobacteria,43XKN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the Dps family	-	-	-	ko:K04047	-	-	-	-	ko00000,ko03036	-	-	-	Ferritin
DYD3_k127_4430063_9	394221.Mmar10_2710	3.711e-27	119.0	COG0746@1|root,COG0746@2|Bacteria,1N4ZQ@1224|Proteobacteria	1224|Proteobacteria	H	Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor	mobA	-	2.7.7.77	ko:K03752	ko00790,ko01100,map00790,map01100	-	R11581	-	ko00000,ko00001,ko01000	-	-	-	NTP_transf_3
DYD3_k127_4430063_8	1192759.AKIB01000026_gene2160	6.23e-46	180.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TSTP@28211|Alphaproteobacteria,2K8WB@204457|Sphingomonadales	204457|Sphingomonadales	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_4430063_3	1254432.SCE1572_11425	3.085e-86	309.0	COG0477@1|root,COG0477@2|Bacteria,1QTYG@1224|Proteobacteria	1224|Proteobacteria	EGP	Major facilitator superfamily	-	-	-	ko:K05548,ko:K08195,ko:K08369	-	-	-	-	ko00000,ko02000	2.A.1,2.A.1.15	-	-	MFS_1,MFS_4,Sugar_tr
DYD3_k127_4430063_14	397945.Aave_2059	9.148e-09	62.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4430063_12	136993.KB900627_gene392	1.879e-13	81.0	28MSC@1|root,2ZB0S@2|Bacteria,1R8PG@1224|Proteobacteria,2VG09@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4430063_1	1089552.KI911559_gene2414	4.739e-164	543.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2JQI2@204441|Rhodospirillales	204441|Rhodospirillales	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	ko:K18661	ko00280,map00280	-	R03383	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4430063_5	1161401.ASJA01000002_gene2748	5.687e-55	221.0	COG3307@1|root,COG3307@2|Bacteria	2|Bacteria	M	-O-antigen	-	-	-	ko:K02847	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01005,ko02000	9.B.67.4,9.B.67.5	-	-	Wzy_C
DYD3_k127_4430063_7	234267.Acid_5940	1.423e-49	194.0	COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria,3Y2PK@57723|Acidobacteria	57723|Acidobacteria	KLTU	WD40 domain protein beta Propeller	-	-	2.7.11.1	ko:K12132	-	-	-	-	ko00000,ko01000,ko01001	-	-	-	Pkinase
DYD3_k127_4437411_7	114615.BRADO5823	3.252e-99	334.0	COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,1MVWY@1224|Proteobacteria,2TRSZ@28211|Alphaproteobacteria,3JR3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA ligase	ligD	-	6.5.1.1	ko:K01971	ko03450,map03450	-	R00381	RC00005	ko00000,ko00001,ko01000,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,LigD_N
DYD3_k127_4437411_8	366602.Caul_1773	2.923e-98	330.0	COG1273@1|root,COG1273@2|Bacteria,1N4UX@1224|Proteobacteria,2TRTI@28211|Alphaproteobacteria,2KG1P@204458|Caulobacterales	204458|Caulobacterales	L	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD	ku	-	-	ko:K10979	ko03450,map03450	-	-	-	ko00000,ko00001,ko03400	-	-	-	Ku
DYD3_k127_4437411_14	1096930.L284_22910	2.44e-07	60.0	2E85T@1|root,332JA@2|Bacteria,1MXF1@1224|Proteobacteria,2TTW1@28211|Alphaproteobacteria,2K5FV@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4437411_6	1247963.JPHU01000010_gene2198	3.326e-105	354.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2VET4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_D23
DYD3_k127_4437411_0	1122613.ATUP01000001_gene1584	0.0	1304.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,43WPE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_4437411_5	595460.RRSWK_04428	8.493e-114	379.0	COG0412@1|root,COG0412@2|Bacteria	2|Bacteria	Q	carboxymethylenebutenolidase activity	-	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
DYD3_k127_4437411_12	582402.Hbal_0279	1.062e-21	112.0	COG1752@1|root,COG1752@2|Bacteria	2|Bacteria	M	Esterase of the alpha-beta hydrolase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	DUF3376,Patatin
DYD3_k127_4437411_11	1306406.ASHX01000001_gene2655	3.402e-23	113.0	COG2110@1|root,COG2110@2|Bacteria,2IBAB@201174|Actinobacteria	201174|Actinobacteria	T	phosphatase homologous to the C-terminal domain of histone macroH2A1	-	-	-	-	-	-	-	-	-	-	-	-	Macro
DYD3_k127_4437411_13	485913.Krac_3036	2.991e-16	91.0	COG0494@1|root,COG0494@2|Bacteria	2|Bacteria	L	nUDIX hydrolase	nudK	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0043167,GO:0043169,GO:0046872,GO:0052751	3.6.1.13	ko:K01515,ko:K12945	ko00230,map00230	-	R01054	RC00002	ko00000,ko00001,ko01000	-	-	iLF82_1304.LF82_1537,iNRG857_1313.NRG857_12310,iUTI89_1310.UTI89_C2793,ic_1306.c2994	NUDIX
DYD3_k127_4437411_10	716928.AJQT01000157_gene2563	4.413e-52	204.0	COG1404@1|root,COG1404@2|Bacteria	2|Bacteria	O	Belongs to the peptidase S8 family	-	-	-	ko:K14645	ko02024,map02024	-	-	-	ko00000,ko00001,ko01000,ko01002,ko03110	-	-	-	PKD,Peptidase_S8
DYD3_k127_4437411_4	631454.N177_0950	6.585e-128	435.0	COG4206@1|root,COG4206@2|Bacteria,1MW63@1224|Proteobacteria,2TT3G@28211|Alphaproteobacteria,1JN86@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	TonB-dependent Receptor Plug Domain	-	-	-	ko:K16092	-	-	-	-	ko00000,ko02000	1.B.14.3	-	-	Plug,TonB_dep_Rec
DYD3_k127_4437411_1	314260.PB2503_03107	1.615e-268	840.0	COG2079@1|root,COG2079@2|Bacteria,1MUIG@1224|Proteobacteria,2TU37@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	2-methylcitrate dehydratase	prpD	-	4.2.1.79	ko:K01720	ko00640,map00640	-	R04424	RC01152	ko00000,ko00001,ko01000	-	-	-	MmgE_PrpD
DYD3_k127_4437411_3	314260.PB2503_03102	7.167e-157	500.0	COG2513@1|root,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,2TTP8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate	prpB	-	4.1.3.30	ko:K03417	ko00640,map00640	-	R00409	RC00286,RC00287	ko00000,ko00001,ko01000	-	-	-	PEP_mutase
DYD3_k127_4437411_2	314260.PB2503_07042	4.407e-184	582.0	COG0372@1|root,COG0372@2|Bacteria,1MUKX@1224|Proteobacteria,2TV99@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Belongs to the citrate synthase family	prpC	-	2.3.3.1,2.3.3.5	ko:K01647,ko:K01659	ko00020,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00640,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351,R00931	RC00004,RC00067,RC00406,RC02827	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Citrate_synt
DYD3_k127_4437411_9	627192.SLG_21560	5.007e-88	293.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2K3GP@204457|Sphingomonadales	204457|Sphingomonadales	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4442443_2	450851.PHZ_c0373	2.555e-79	269.0	COG0242@1|root,COG0242@2|Bacteria,1RA2P@1224|Proteobacteria,2U797@28211|Alphaproteobacteria,2KGBS@204458|Caulobacterales	204458|Caulobacterales	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	def	-	3.5.1.88	ko:K01462	-	-	-	-	ko00000,ko01000	-	-	-	Pep_deformylase
DYD3_k127_4442443_0	1161401.ASJA01000014_gene1044	2.517e-132	449.0	COG1629@1|root,COG4771@2|Bacteria,1R0WC@1224|Proteobacteria,2U1A6@28211|Alphaproteobacteria,43WF4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl_3,Plug,TonB_dep_Rec
DYD3_k127_4442443_1	1161401.ASJA01000014_gene1044	3.287e-85	306.0	COG1629@1|root,COG4771@2|Bacteria,1R0WC@1224|Proteobacteria,2U1A6@28211|Alphaproteobacteria,43WF4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl_3,Plug,TonB_dep_Rec
DYD3_k127_4448597_0	349521.HCH_01591	3.056e-61	225.0	COG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,1RQRT@1236|Gammaproteobacteria,1XPQ5@135619|Oceanospirillales	135619|Oceanospirillales	O	XdhC and CoxI family	-	-	-	ko:K07402	-	-	-	-	ko00000	-	-	-	XdhC_C,XdhC_CoxI
DYD3_k127_448502_4	375451.RD1_0759	1.689e-62	229.0	COG0845@1|root,COG0845@2|Bacteria,1NJDF@1224|Proteobacteria,2TSZA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_44875	-	-	ko:K21137	-	M00821	-	-	ko00000,ko00002,ko02000	2.A.6.2.27,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_448502_0	933262.AXAM01000109_gene2063	2.368e-289	922.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,42MQ0@68525|delta/epsilon subdivisions,2WJ2A@28221|Deltaproteobacteria,2MI1M@213118|Desulfobacterales	28221|Deltaproteobacteria	V	AcrB/AcrD/AcrF family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_448502_1	319003.Bra1253DRAFT_02373	5.1e-155	498.0	COG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria,3JTI6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin phospholipase	MA20_17270	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	DUF3734,Patatin
DYD3_k127_448502_2	663610.JQKO01000016_gene1597	5.807e-117	386.0	COG1028@1|root,COG1028@2|Bacteria,1MU5Y@1224|Proteobacteria,2TRNQ@28211|Alphaproteobacteria,3NA8W@45404|Beijerinckiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	1.1.1.30	ko:K00019	ko00072,ko00650,ko01100,map00072,map00650,map01100	M00088	R01361	RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short,adh_short_C2
DYD3_k127_448502_3	1380391.JIAS01000011_gene4709	1.637e-105	356.0	COG0477@1|root,COG2814@2|Bacteria,1MWFH@1224|Proteobacteria,2TR0R@28211|Alphaproteobacteria,2JR1G@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_4485230_0	1161401.ASJA01000002_gene2687	1.238e-158	529.0	COG5373@1|root,COG5373@2|Bacteria,1N08V@1224|Proteobacteria,2TWNB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF2339
DYD3_k127_4485230_2	269796.Rru_A0154	9.7e-71	262.0	COG0289@1|root,COG0289@2|Bacteria,1MUCT@1224|Proteobacteria,2TSFJ@28211|Alphaproteobacteria,2JPX3@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate	dapB	-	1.17.1.8	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R04198,R04199	RC00478	ko00000,ko00001,ko00002,ko01000	-	-	-	DapB_C,DapB_N
DYD3_k127_4485230_1	394221.Mmar10_1655	3.054e-139	450.0	COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,2TSWD@28211|Alphaproteobacteria,43X40@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG1398 Fatty-acid desaturase	-	-	1.14.19.1	ko:K00507	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212	-	R02222	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
DYD3_k127_4485230_3	1183438.GKIL_0635	2.067e-25	110.0	COG3829@1|root,COG3920@1|root,COG3829@2|Bacteria,COG3920@2|Bacteria	2|Bacteria	T	Histidine kinase	pdtaS	-	2.7.13.3	ko:K00936	-	M00839	-	-	ko00000,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HATPase_c_2,H_kinase_N,HisKA_2,PAS_3,PAS_4,PAS_9,Response_reg
DYD3_k127_4495998_1	1122613.ATUP01000001_gene154	3.117e-61	221.0	COG0838@1|root,COG0838@2|Bacteria,1RGUT@1224|Proteobacteria,2U72Q@28211|Alphaproteobacteria,43XXC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00330	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q4
DYD3_k127_4495998_0	1297863.APJF01000021_gene11	1.74e-84	295.0	COG2304@1|root,COG2304@2|Bacteria,1N2UU@1224|Proteobacteria,2TYMP@28211|Alphaproteobacteria,3JUCA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	von Willebrand factor type A domain	-	-	-	-	-	-	-	-	-	-	-	-	VWA,VWA_2
DYD3_k127_4535552_19	394221.Mmar10_1453	9.333e-53	195.0	COG0470@1|root,COG0470@2|Bacteria,1MY1W@1224|Proteobacteria,2TV3E@28211|Alphaproteobacteria,43XIZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA polymerase III, delta prime subunit	holB	-	2.7.7.7	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2
DYD3_k127_4535552_15	1122613.ATUP01000001_gene54	1.027e-96	324.0	COG0084@1|root,COG0084@2|Bacteria,1MUC0@1224|Proteobacteria,2TS88@28211|Alphaproteobacteria,43X8M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	TatD family	tatD	-	-	ko:K03424	-	-	-	-	ko00000,ko01000	-	-	-	TatD_DNase
DYD3_k127_4535552_14	1161401.ASJA01000007_gene2132	7.111e-102	339.0	COG1235@1|root,COG1235@2|Bacteria,1MVJH@1224|Proteobacteria,2TQQN@28211|Alphaproteobacteria,43WX7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	phnP	-	3.1.4.55	ko:K06167	ko00440,map00440	-	R10205	RC00296	ko00000,ko00001,ko01000	-	-	-	Lactamase_B_2
DYD3_k127_4535552_13	402881.Plav_3121	1.414e-102	341.0	COG1694@1|root,COG3956@2|Bacteria,1MVKM@1224|Proteobacteria,2TRC9@28211|Alphaproteobacteria,1JNNB@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	MazG nucleotide pyrophosphohydrolase domain	mazG	GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009267,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658	3.6.1.9	ko:K02499,ko:K04765	ko00230,ko00240,ko00760,ko00770,ko01100,map00230,map00240,map00760,map00770,map01100	-	R00086,R00087,R00103,R00287,R00426,R00515,R00662,R00720,R03004,R03036,R11323	RC00002	ko00000,ko00001,ko01000,ko03036	-	-	-	MazG
DYD3_k127_4535552_17	1502724.FF80_01650	3.639e-69	245.0	COG0500@1|root,COG2226@2|Bacteria,1N67F@1224|Proteobacteria,2UGGR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Nodulation protein S (NodS)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_4535552_10	1122613.ATUP01000001_gene66	6.481e-146	476.0	COG2262@1|root,COG2262@2|Bacteria,1MUA0@1224|Proteobacteria,2TUXJ@28211|Alphaproteobacteria,43WU4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis	hflX	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018105,GO:0018193,GO:0018209,GO:0019001,GO:0019222,GO:0019538,GO:0019843,GO:0022411,GO:0030554,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032790,GO:0032984,GO:0032988,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036211,GO:0036289,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:2000112	-	ko:K03665	-	-	-	-	ko00000,ko03009	-	-	-	GTP-bdg_M,GTP-bdg_N,MMR_HSR1
DYD3_k127_4535552_22	1479238.JQMZ01000001_gene1797	2.986e-39	147.0	COG1923@1|root,COG1923@2|Bacteria,1MZM1@1224|Proteobacteria,2UBTW@28211|Alphaproteobacteria,43Y8P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs	hfq	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006807,GO:0008150,GO:0008152,GO:0009399,GO:0071941,GO:0097159,GO:1901363	-	ko:K03666	ko02024,ko03018,ko05111,map02024,map03018,map05111	-	-	-	ko00000,ko00001,ko03019,ko03036	-	-	-	Hfq
DYD3_k127_4535552_4	1161401.ASJA01000007_gene2126	9.088e-185	588.0	COG0569@1|root,COG0569@2|Bacteria,1MW8R@1224|Proteobacteria,2TRP9@28211|Alphaproteobacteria,43X6R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG0569 K transport systems, NAD-binding component	trkA	-	-	ko:K03499	-	-	-	-	ko00000,ko02000	2.A.38.1,2.A.38.4	-	-	TrkA_C,TrkA_N
DYD3_k127_4535552_3	1479238.JQMZ01000001_gene1801	2.573e-204	647.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQW2@28211|Alphaproteobacteria,43W77@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	ntrX	-	-	ko:K13599	ko02020,map02020	M00498	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD3_k127_4535552_5	509190.Cseg_1983	3.109e-184	601.0	COG5000@1|root,COG5000@2|Bacteria,1MWKZ@1224|Proteobacteria,2TQTB@28211|Alphaproteobacteria,2KFZT@204458|Caulobacterales	204458|Caulobacterales	T	Signal transduction histidine kinase	-	-	2.7.13.3	ko:K13598	ko02020,map02020	M00498	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,PAS
DYD3_k127_4535552_12	314254.OA2633_02486	2.278e-103	346.0	COG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,2TRC8@28211|Alphaproteobacteria,43WA1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	dusB	-	-	ko:K05540	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Dus
DYD3_k127_4535552_11	1168059.KB899087_gene982	3.903e-116	385.0	COG0245@1|root,COG1211@1|root,COG0245@2|Bacteria,COG1211@2|Bacteria,1MVHA@1224|Proteobacteria,2TRQC@28211|Alphaproteobacteria,3EXWJ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	I	Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	ispDF	-	2.7.7.60,4.6.1.12	ko:K01770,ko:K12506	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05633,R05637	RC00002,RC01440	ko00000,ko00001,ko00002,ko01000	-	-	-	IspD,YgbB
DYD3_k127_4535552_6	450851.PHZ_c1734	1.487e-170	561.0	COG4122@1|root,COG4122@2|Bacteria,1QWCT@1224|Proteobacteria,2TYCV@28211|Alphaproteobacteria,2KHS8@204458|Caulobacterales	204458|Caulobacterales	S	O-methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4535552_20	1336243.JAEA01000013_gene3262	5.571e-51	189.0	COG1546@1|root,COG1546@2|Bacteria,1RH2Y@1224|Proteobacteria,2U94H@28211|Alphaproteobacteria,1JV1N@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the CinA family	cinA	-	3.5.1.42	ko:K03743	ko00760,map00760	-	R02322	RC00100	ko00000,ko00001,ko01000	-	-	-	CinA
DYD3_k127_4535552_21	1122613.ATUP01000001_gene78	1.3e-41	158.0	COG2867@1|root,COG2867@2|Bacteria,1RGUH@1224|Proteobacteria,2U7D8@28211|Alphaproteobacteria,43YGU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Polyketide cyclase / dehydrase and lipid transport	pasT	-	-	ko:K18588	-	-	-	-	ko00000	-	-	-	Polyketide_cyc
DYD3_k127_4535552_7	1280953.HOC_12423	7.843e-163	519.0	COG0320@1|root,COG0320@2|Bacteria,1MVRD@1224|Proteobacteria,2TRP3@28211|Alphaproteobacteria,43X90@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	lipA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576	2.8.1.8	ko:K03644	ko00785,ko01100,map00785,map01100	-	R07767,R07768	RC01978	ko00000,ko00001,ko01000	-	-	-	LIAS_N,Radical_SAM
DYD3_k127_4535552_1	394221.Mmar10_1427	3.17e-215	683.0	COG0318@1|root,COG0318@2|Bacteria,1QVGC@1224|Proteobacteria,2TWFC@28211|Alphaproteobacteria,43WY7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	2.3.1.40,6.2.1.20	ko:K05939	ko00071,ko00564,map00071,map00564	-	R01406,R04864	RC00014,RC00039,RC00041	ko00000,ko00001,ko01000	-	-	-	AMP-binding
DYD3_k127_4535552_23	1335760.ASTG01000005_gene1191	6.401e-25	117.0	COG3832@1|root,COG3832@2|Bacteria,1RH7Z@1224|Proteobacteria,2U9E1@28211|Alphaproteobacteria,2K54H@204457|Sphingomonadales	204457|Sphingomonadales	J	glyoxalase III activity	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1,Polyketide_cyc2
DYD3_k127_4535552_24	742766.HMPREF9455_03489	2.759e-20	106.0	2DNU0@1|root,32Z4H@2|Bacteria	2|Bacteria	S	FRG domain	-	-	-	-	-	-	-	-	-	-	-	-	FRG
DYD3_k127_4535552_0	394221.Mmar10_1425	7.331e-221	692.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TR8H@28211|Alphaproteobacteria,43WSN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	lpd	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.8.1.4	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Pyr_redox_2,Pyr_redox_dim
DYD3_k127_4535552_16	1479238.JQMZ01000001_gene2440	4.68e-74	255.0	COG2095@1|root,COG2095@2|Bacteria,1MX5T@1224|Proteobacteria,2U59A@28211|Alphaproteobacteria,43X87@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	UPF0056 membrane protein	marC	-	-	ko:K05595	-	-	-	-	ko00000,ko02000	2.A.95.1	-	-	MarC
DYD3_k127_4535552_9	1121123.AUAO01000003_gene2105	3.626e-157	507.0	COG0508@1|root,COG0508@2|Bacteria,1MUGY@1224|Proteobacteria,2TRXM@28211|Alphaproteobacteria,2KG5R@204458|Caulobacterales	204458|Caulobacterales	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	-	-	2.3.1.12	ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	M00307	R00209,R02569	RC00004,RC02742,RC02857	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl,E3_binding
DYD3_k127_4535552_18	450851.PHZ_c1742	1.206e-59	209.0	COG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,2UBDG@28211|Alphaproteobacteria,2KK45@204458|Caulobacterales	204458|Caulobacterales	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_4535552_2	314254.OA2633_02591	6.471e-208	654.0	COG0022@1|root,COG0022@2|Bacteria,1R8KB@1224|Proteobacteria,2TRMR@28211|Alphaproteobacteria,43W9A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhB	-	1.2.4.1	ko:K00162	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_lipoyl,Transket_pyr,Transketolase_C
DYD3_k127_4535552_8	1280954.HPO_06308	1.421e-158	506.0	COG1071@1|root,COG1071@2|Bacteria,1MU5R@1224|Proteobacteria,2TRSS@28211|Alphaproteobacteria,43X3Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhA	-	1.2.4.1	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	E1_dh
DYD3_k127_4535552_25	1161401.ASJA01000007_gene2108	2.859e-15	78.0	COG2919@1|root,COG2919@2|Bacteria,1NGSW@1224|Proteobacteria,2UJYE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	Septum formation initiator	-	-	-	-	-	-	-	-	-	-	-	-	DivIC
DYD3_k127_4568961_13	1280952.HJA_15075	4.551e-58	214.0	COG2267@1|root,COG2267@2|Bacteria,1MW9H@1224|Proteobacteria,2U1YC@28211|Alphaproteobacteria,43WEH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_4568961_20	991905.SL003B_0861	3.046e-24	114.0	COG4105@1|root,COG4105@2|Bacteria,1QZMN@1224|Proteobacteria,2TYAN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4568961_24	1161401.ASJA01000012_gene851	5.082e-15	76.0	COG0257@1|root,COG0257@2|Bacteria,1NGBJ@1224|Proteobacteria,2UJAG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL36 family	rpmJ	-	-	ko:K02919	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L36
DYD3_k127_4568961_7	1161401.ASJA01000012_gene854	7.898e-118	395.0	COG2951@1|root,COG3409@1|root,COG2951@2|Bacteria,COG3409@2|Bacteria,1MUZ3@1224|Proteobacteria,2TRP0@28211|Alphaproteobacteria,43X9A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Lytic murein transglycosylase	mltB	-	-	ko:K00786,ko:K08305	-	-	-	-	ko00000,ko01000,ko01011	-	GH103	-	PG_binding_1,SLT_2
DYD3_k127_4568961_6	394221.Mmar10_2519	5.688e-140	449.0	COG1291@1|root,COG1291@2|Bacteria,1MXK3@1224|Proteobacteria,2TR5A@28211|Alphaproteobacteria,43WNR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	With MotB forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine	motA	-	-	ko:K02556	ko02020,ko02030,ko02040,map02020,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	MotA_ExbB
DYD3_k127_4568961_1	1453501.JELR01000005_gene1696	4.785e-236	751.0	COG1629@1|root,COG4771@2|Bacteria,1QWIP@1224|Proteobacteria,1RZ72@1236|Gammaproteobacteria,469XG@72275|Alteromonadaceae	1236|Gammaproteobacteria	P	Outer membrane protein beta-barrel family	-	-	-	ko:K16089	-	-	-	-	ko00000,ko02000	1.B.14.1,1.B.14.10	-	-	OMP_b-brl_3,Plug,TonB_dep_Rec
DYD3_k127_4568961_8	1123503.KB908057_gene2727	6.567e-96	325.0	COG4247@1|root,COG4247@2|Bacteria,1MVTA@1224|Proteobacteria,2TUDJ@28211|Alphaproteobacteria,2KGRX@204458|Caulobacterales	204458|Caulobacterales	I	3-phytase	-	-	-	-	-	-	-	-	-	-	-	-	Phytase
DYD3_k127_4568961_2	1123059.KB823012_gene2202	1.261e-213	672.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,43X2P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	tacA	GO:0003674,GO:0003700,GO:0004857,GO:0006355,GO:0008073,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010967,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033238,GO:0042979,GO:0043086,GO:0044092,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141	-	-	-	-	-	-	-	-	-	-	HTH_8,Response_reg,Sigma54_activ_2,Sigma54_activat
DYD3_k127_4568961_22	1040982.AXAL01000001_gene1966	6.344e-18	94.0	COG1525@1|root,COG1525@2|Bacteria,1QZVA@1224|Proteobacteria,2TYEH@28211|Alphaproteobacteria,43MCJ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	nuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4568961_3	509190.Cseg_0611	2.432e-185	589.0	COG0661@1|root,COG0661@2|Bacteria,1MW1J@1224|Proteobacteria,2TSHG@28211|Alphaproteobacteria,2KGX9@204458|Caulobacterales	204458|Caulobacterales	S	pfam abc1	-	-	-	-	-	-	-	-	-	-	-	-	ABC1
DYD3_k127_4568961_21	1449350.OCH239_01855	4.093e-20	97.0	COG0784@1|root,COG0784@2|Bacteria,1N8US@1224|Proteobacteria,2UFJB@28211|Alphaproteobacteria,4KNXQ@93682|Roseivivax	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_4568961_12	1168059.KB899087_gene4325	4.624e-65	225.0	COG0328@1|root,COG0328@2|Bacteria,1RCZ1@1224|Proteobacteria,2U7C4@28211|Alphaproteobacteria,3EZ7H@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhA	-	3.1.26.4	ko:K03469	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	RNase_H
DYD3_k127_4568961_23	588932.JHOF01000018_gene1372	4.032e-17	89.0	COG3637@1|root,COG3637@2|Bacteria,1N6MW@1224|Proteobacteria,2UDM3@28211|Alphaproteobacteria,2KGWX@204458|Caulobacterales	204458|Caulobacterales	M	Outer membrane protein beta-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl
DYD3_k127_4568961_14	1122169.AREN01000014_gene2737	1.633e-47	175.0	2AP2K@1|root,31E40@2|Bacteria,1N3BH@1224|Proteobacteria,1STBY@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4568961_5	1161401.ASJA01000012_gene893	1.983e-145	467.0	COG0761@1|root,COG0761@2|Bacteria,1MU7G@1224|Proteobacteria,2TRNR@28211|Alphaproteobacteria,43WSF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IM	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis	ispH	-	1.17.7.4	ko:K03527	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05884,R08210	RC01137,RC01487	ko00000,ko00001,ko00002,ko01000	-	-	-	LYTB
DYD3_k127_4568961_15	1161401.ASJA01000012_gene894	1.147e-43	179.0	2E6A6@1|root,330Y2@2|Bacteria,1NB20@1224|Proteobacteria,2UGF9@28211|Alphaproteobacteria,43XXJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4568961_0	394221.Mmar10_2213	1.484e-247	778.0	COG0018@1|root,COG0018@2|Bacteria,1MU4J@1224|Proteobacteria,2TS3Y@28211|Alphaproteobacteria,43WMX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Arginyl-tRNA synthetase	argS	-	6.1.1.19	ko:K01887	ko00970,map00970	M00359,M00360	R03646	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d
DYD3_k127_4568961_27	69395.JQLZ01000006_gene2172	3.599e-06	53.0	2DP00@1|root,32ZZT@2|Bacteria,1N95H@1224|Proteobacteria,2UGPJ@28211|Alphaproteobacteria,2KHDE@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PGPGW
DYD3_k127_4568961_19	1041159.AZUW01000001_gene3402	1.121e-25	119.0	COG0711@1|root,COG0711@2|Bacteria,1N0P5@1224|Proteobacteria,2UBDJ@28211|Alphaproteobacteria,4BMQH@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)	atpF2	-	-	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_B
DYD3_k127_4568961_17	639283.Snov_4432	1.559e-32	134.0	COG0711@1|root,COG0711@2|Bacteria,1MZGU@1224|Proteobacteria,2UBVW@28211|Alphaproteobacteria,3EZF9@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpF2	-	-	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_B
DYD3_k127_4568961_18	1400525.JNIU01000001_gene1308	5.019e-29	118.0	COG0636@1|root,COG0636@2|Bacteria,1MZBU@1224|Proteobacteria,2UFPN@28211|Alphaproteobacteria,4BQV8@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpE	-	-	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_C
DYD3_k127_4568961_11	314254.OA2633_14141	8.951e-78	267.0	COG0356@1|root,COG0356@2|Bacteria,1MV87@1224|Proteobacteria,2TRNV@28211|Alphaproteobacteria,43WR2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	it plays a direct role in the translocation of protons across the membrane	atpB	-	-	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko03110	3.A.2.1	-	-	ATP-synt_A
DYD3_k127_4568961_25	1121271.AUCM01000002_gene3943	3.277e-12	71.0	COG5336@1|root,COG5336@2|Bacteria	2|Bacteria	C	function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex	atpI	-	-	ko:K02116	-	-	-	-	ko00000,ko00194	3.A.2.1	-	-	ATPase_gene1
DYD3_k127_4568961_16	69395.JQLZ01000001_gene2754	6.386e-39	148.0	COG3682@1|root,COG3682@2|Bacteria,1RH6Y@1224|Proteobacteria,2U9MX@28211|Alphaproteobacteria,2KK6J@204458|Caulobacterales	204458|Caulobacterales	K	Penicillinase repressor	-	-	-	-	-	-	-	-	-	-	-	-	Penicillinase_R
DYD3_k127_4568961_9	366602.Caul_2929	4.253e-93	325.0	COG0666@1|root,COG4219@1|root,COG0666@2|Bacteria,COG4219@2|Bacteria,1N952@1224|Proteobacteria,2UF6P@28211|Alphaproteobacteria,2KJMS@204458|Caulobacterales	204458|Caulobacterales	KT	Ankyrin repeat	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2,Peptidase_M56
DYD3_k127_4568961_4	366602.Caul_2930	1.934e-165	536.0	COG2303@1|root,COG2303@2|Bacteria,1MXUT@1224|Proteobacteria	1224|Proteobacteria	E	(GMC) oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO,DUF1080,FAD_binding_2,FAD_binding_3,GMC_oxred_C,GMC_oxred_N
DYD3_k127_4568961_10	1161401.ASJA01000020_gene591	1.508e-89	305.0	COG1196@1|root,COG1196@2|Bacteria,1MUAQ@1224|Proteobacteria,2TRQG@28211|Alphaproteobacteria,43WG6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Required for chromosome condensation and partitioning	smc	-	-	ko:K03529	-	-	-	-	ko00000,ko03036	-	-	-	SMC_N
DYD3_k127_4578758_0	1161401.ASJA01000001_gene345	4.525e-218	697.0	COG0480@1|root,COG0480@2|Bacteria,1MUCV@1224|Proteobacteria,2TQVI@28211|Alphaproteobacteria,43WPU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome	-	-	-	ko:K02355	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EFG_C,EFG_II,EFG_IV,GTP_EFTU
DYD3_k127_4578758_6	1161401.ASJA01000001_gene346	1.855e-23	106.0	COG4731@1|root,COG4731@2|Bacteria,1RJE2@1224|Proteobacteria,2UA7R@28211|Alphaproteobacteria,43ZYK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
DYD3_k127_4578758_4	1282876.BAOK01000001_gene1281	1.701e-62	218.0	COG0783@1|root,COG0783@2|Bacteria,1RAC5@1224|Proteobacteria,2U5Q5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the Dps family	-	-	-	ko:K04047	-	-	-	-	ko00000,ko03036	-	-	-	Ferritin
DYD3_k127_4578758_3	394221.Mmar10_2147	3.065e-104	346.0	COG0583@1|root,COG0583@2|Bacteria,1MV5N@1224|Proteobacteria,2TRAX@28211|Alphaproteobacteria,43WS9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	MA20_05050	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4578758_2	1280952.HJA_04251	4.635e-125	425.0	COG1262@1|root,COG4249@1|root,COG1262@2|Bacteria,COG4249@2|Bacteria,1NQ5K@1224|Proteobacteria,2U2VJ@28211|Alphaproteobacteria,43ZFH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase,Peptidase_C14
DYD3_k127_4578758_5	1161401.ASJA01000006_gene1867	5.67e-30	123.0	COG5331@1|root,COG5331@2|Bacteria,1N3IS@1224|Proteobacteria,2UV6E@28211|Alphaproteobacteria,43YIY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	MAPEG family	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
DYD3_k127_4578758_1	402881.Plav_2305	1.407e-156	499.0	COG0492@1|root,COG0492@2|Bacteria,1MV15@1224|Proteobacteria,2TRBW@28211|Alphaproteobacteria,1JNC9@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Pyridine nucleotide-disulphide oxidoreductase	trxB	-	1.8.1.9	ko:K00384	ko00450,map00450	-	R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD3_k127_4605487_5	330214.NIDE1585	5.669e-95	322.0	COG2204@1|root,COG2204@2|Bacteria,3J0C2@40117|Nitrospirae	2|Bacteria	T	Bacterial regulatory protein, Fis family	-	-	-	ko:K02481,ko:K07713,ko:K07714	ko02020,map02020	M00499,M00500	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD3_k127_4605487_1	1161401.ASJA01000017_gene1293	9.081e-265	846.0	COG0612@1|root,COG0612@2|Bacteria,1NAH6@1224|Proteobacteria,2U0S5@28211|Alphaproteobacteria,43WGB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Insulinase (Peptidase family M16)	-	-	-	ko:K07263	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M16,Peptidase_M16_C
DYD3_k127_4605487_10	1121875.KB907549_gene1715	5.699e-06	56.0	COG0457@1|root,COG5616@1|root,COG0457@2|Bacteria,COG5616@2|Bacteria,4NFW7@976|Bacteroidetes,1HZQR@117743|Flavobacteriia	976|Bacteroidetes	K	COGs COG5616 integral membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18,TPR_8
DYD3_k127_4605487_4	627192.SLG_28170	1.25e-120	420.0	COG4773@1|root,COG4773@2|Bacteria	2|Bacteria	P	Receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_4605487_0	1122613.ATUP01000001_gene1085	5.711e-271	845.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,43X7Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_4605487_8	1161401.ASJA01000017_gene1296	1.425e-74	261.0	COG2267@1|root,COG2267@2|Bacteria,1NTH9@1224|Proteobacteria,2TWFW@28211|Alphaproteobacteria,4414R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_4605487_6	394221.Mmar10_0316	5.767e-92	312.0	COG2267@1|root,COG2267@2|Bacteria,1RATF@1224|Proteobacteria,2VFCE@28211|Alphaproteobacteria,43XNI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_4605487_9	158500.BV97_01286	3.44e-58	214.0	COG0491@1|root,COG0491@2|Bacteria,1P5NJ@1224|Proteobacteria,2TRXW@28211|Alphaproteobacteria,2KATS@204457|Sphingomonadales	204457|Sphingomonadales	S	Beta-lactamase superfamily domain	-	-	3.5.2.6	ko:K17837	ko01501,map01501	-	R06363	RC01499	ko00000,ko00001,ko01000	-	-	-	Lactamase_B
DYD3_k127_4605487_7	1396418.BATQ01000044_gene6466	1.455e-90	302.0	COG3128@1|root,COG3128@2|Bacteria,46TZ2@74201|Verrucomicrobia,2IV45@203494|Verrucomicrobiae	203494|Verrucomicrobiae	S	Prolyl 4-hydroxylase alpha subunit homologues.	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy_3
DYD3_k127_4605487_2	1380394.JADL01000005_gene5480	1.094e-165	548.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TVX5@28211|Alphaproteobacteria,2JYVI@204441|Rhodospirillales	204441|Rhodospirillales	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	ko:K16090	-	-	-	-	ko00000,ko02000	1.B.14.1.11	-	-	Plug,TonB_dep_Rec
DYD3_k127_4605487_3	1177179.A11A3_05841	1.525e-132	439.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,1RMZ8@1236|Gammaproteobacteria,1XI30@135619|Oceanospirillales	135619|Oceanospirillales	I	Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate	-	-	1.1.1.35	ko:K07516	ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212	M00087	R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
DYD3_k127_4627287_5	1123267.JONN01000001_gene659	1.361e-08	64.0	COG1420@1|root,COG1420@2|Bacteria,1MVX4@1224|Proteobacteria,2TRUF@28211|Alphaproteobacteria,2K03N@204457|Sphingomonadales	204457|Sphingomonadales	K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons	hrcA	-	-	ko:K03705	-	-	-	-	ko00000,ko03000	-	-	-	HrcA,HrcA_DNA-bdg
DYD3_k127_4627287_3	1173022.Cri9333_3366	3.545e-31	127.0	COG0639@1|root,COG0639@2|Bacteria,1GR5K@1117|Cyanobacteria,1HB1P@1150|Oscillatoriales	1117|Cyanobacteria	T	Domain of unknown function DUF29	-	-	-	-	-	-	-	-	-	-	-	-	DUF29
DYD3_k127_4627287_0	1479238.JQMZ01000001_gene1383	0.0	1553.0	COG0458@1|root,COG0458@2|Bacteria,1MUDZ@1224|Proteobacteria,2TQZU@28211|Alphaproteobacteria,43X25@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the CarB family	carB	-	6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000	-	-	-	CPSase_L_D2,CPSase_L_D3,MGS
DYD3_k127_4627287_1	1121123.AUAO01000002_gene464	4.517e-71	243.0	COG0782@1|root,COG0782@2|Bacteria,1RCXW@1224|Proteobacteria,2U5JU@28211|Alphaproteobacteria,2KGAN@204458|Caulobacterales	204458|Caulobacterales	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	greA	-	-	ko:K03624	-	-	-	-	ko00000,ko03021	-	-	-	GreA_GreB,GreA_GreB_N
DYD3_k127_4627287_2	187303.BN69_3177	9.222e-44	168.0	COG5113@1|root,COG3236@2|Bacteria,1NQ21@1224|Proteobacteria	1224|Proteobacteria	O	hydrolase activity, hydrolyzing N-glycosyl compounds	-	-	-	ko:K09935	-	-	-	-	ko00000	-	-	-	Phage_30_3
DYD3_k127_4627287_4	1282362.AEAC466_12410	3.117e-22	101.0	COG3660@1|root,COG3660@2|Bacteria,1R70U@1224|Proteobacteria,2TQWV@28211|Alphaproteobacteria,2KF7S@204458|Caulobacterales	204458|Caulobacterales	M	Mitochondrial fission ELM1	-	-	-	ko:K07276	-	-	-	-	ko00000	-	-	-	Mito_fiss_Elm1
DYD3_k127_4664780_1	394221.Mmar10_0893	1.162e-217	690.0	COG0651@1|root,COG0651@2|Bacteria,1MV6V@1224|Proteobacteria,2TSJC@28211|Alphaproteobacteria,43WE8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CP	COG0651 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit	nuoL3	-	-	ko:K05568	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	Proton_antipo_M
DYD3_k127_4664780_3	394221.Mmar10_0891	2.601e-175	565.0	COG0651@1|root,COG0651@2|Bacteria,1QU5Z@1224|Proteobacteria,2U1B0@28211|Alphaproteobacteria,43X3R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CP	COG0651 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit	nuoL2	-	1.6.5.3	ko:K00341,ko:K05568	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000,ko02000	2.A.63.1,2.A.63.2,3.D.1	-	-	Proton_antipo_M,Proton_antipo_N
DYD3_k127_4664780_2	1161401.ASJA01000005_gene2528	1.079e-184	591.0	COG0651@1|root,COG0651@2|Bacteria,1MURB@1224|Proteobacteria,2TRQ2@28211|Alphaproteobacteria,43X46@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CP	COG0651 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit	nuoN2	-	1.6.5.3	ko:K00343,ko:K05568	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000,ko02000	2.A.63.1,2.A.63.2,3.D.1	-	-	Proton_antipo_M
DYD3_k127_4664780_9	1123059.KB823011_gene849	2.443e-38	150.0	COG1006@1|root,COG1006@2|Bacteria,1RGU1@1224|Proteobacteria,2UA1Z@28211|Alphaproteobacteria,43XUG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG1006 Multisubunit Na H antiporter, MnhC subunit	-	-	-	ko:K05567	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	Oxidored_q2
DYD3_k127_4664780_5	1280949.HAD_08900	1.846e-61	218.0	COG2111@1|root,COG2111@2|Bacteria,1N1CK@1224|Proteobacteria,2UCMV@28211|Alphaproteobacteria,43XTU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG2111 Multisubunit Na H antiporter, MnhB subunit	-	-	-	ko:K05566	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	MnhB
DYD3_k127_4664780_6	1161401.ASJA01000005_gene2531	1.172e-60	216.0	COG2111@1|root,COG2111@2|Bacteria,1N1CK@1224|Proteobacteria,2U7UT@28211|Alphaproteobacteria,43XM9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG2111 Multisubunit Na H antiporter, MnhB subunit	-	-	-	ko:K05566	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	DUF4040
DYD3_k127_4664780_10	1161401.ASJA01000005_gene2532	5.495e-33	137.0	COG1320@1|root,COG1320@2|Bacteria,1N75I@1224|Proteobacteria,2UETR@28211|Alphaproteobacteria,43Y5P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Na+/H+ antiporter subunit	-	-	-	ko:K05571	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	PhaG_MnhG_YufB
DYD3_k127_4664780_11	394221.Mmar10_0885	1.469e-28	123.0	COG2212@1|root,COG2212@2|Bacteria,1N6VV@1224|Proteobacteria,2UHB7@28211|Alphaproteobacteria,43YDP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Multiple resistance and pH regulation protein F	-	-	-	ko:K05570	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	MrpF_PhaF
DYD3_k127_4664780_8	1161401.ASJA01000005_gene2534	4.134e-39	152.0	COG1863@1|root,COG1863@2|Bacteria,1MZYJ@1224|Proteobacteria,2UBYN@28211|Alphaproteobacteria,43Y84@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG1863 Multisubunit Na H antiporter, MnhE subunit	-	-	-	ko:K05569	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	MNHE
DYD3_k127_4664780_4	1292034.OR37_02608	6.157e-106	365.0	COG5330@1|root,COG5330@2|Bacteria,1QISN@1224|Proteobacteria,2TTV6@28211|Alphaproteobacteria,2KFRI@204458|Caulobacterales	204458|Caulobacterales	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_4664780_7	582402.Hbal_1215	3.948e-42	166.0	COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,2U70T@28211|Alphaproteobacteria,43XKM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	peptide methionine sulfoxide reductase	MA20_08310	-	1.8.4.12	ko:K07305	-	-	-	-	ko00000,ko01000	-	-	-	SelR
DYD3_k127_4664780_0	1161401.ASJA01000005_gene2515	7.383e-257	813.0	COG1770@1|root,COG1770@2|Bacteria,1MUED@1224|Proteobacteria,2TTR0@28211|Alphaproteobacteria,43WH2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG1770 Protease II	ptrB	-	3.4.21.83	ko:K01354	ko05142,ko05143,map05142,map05143	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S9,Peptidase_S9_N
DYD3_k127_4664780_13	1123060.JONP01000068_gene4320	3.752e-06	49.0	COG3335@1|root,COG3335@2|Bacteria	2|Bacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
DYD3_k127_4681674_14	861299.J421_5876	1.374e-75	267.0	COG0577@1|root,COG0577@2|Bacteria,1ZUI2@142182|Gemmatimonadetes	142182|Gemmatimonadetes	V	MacB-like periplasmic core domain	-	-	-	-	-	-	-	-	-	-	-	-	FtsX,MacB_PCD
DYD3_k127_4681674_26	298655.KI912267_gene7755	6.509e-25	108.0	COG1373@1|root,COG1373@2|Bacteria,2GK1Q@201174|Actinobacteria	201174|Actinobacteria	J	Domain of unknown function (DUF4143)	-	-	-	ko:K07133	-	-	-	-	ko00000	-	-	-	AAA_14,DUF4143
DYD3_k127_4681674_28	656024.FsymDg_4517	3.211e-16	79.0	COG1373@1|root,COG1373@2|Bacteria,2GK1Q@201174|Actinobacteria	201174|Actinobacteria	J	Domain of unknown function (DUF4143)	-	-	-	ko:K07133	-	-	-	-	ko00000	-	-	-	AAA_14,DUF4143
DYD3_k127_4681674_1	1346791.M529_18425	1.515e-222	724.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_4681674_7	1122613.ATUP01000001_gene1327	1.672e-123	404.0	COG0130@1|root,COG0130@2|Bacteria,1MV0N@1224|Proteobacteria,2TSJK@28211|Alphaproteobacteria,43X3C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	truB	GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481	5.4.99.25	ko:K03177	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	TruB-C_2,TruB_C_2,TruB_N
DYD3_k127_4681674_18	1231190.NA8A_01400	5.198e-40	149.0	COG0184@1|root,COG0184@2|Bacteria,1MZ2W@1224|Proteobacteria,2UBRZ@28211|Alphaproteobacteria,43KCG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	J	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	rpsO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02956	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S15
DYD3_k127_4681674_0	1123503.KB908056_gene2004	0.0	1077.0	COG1185@1|root,COG1185@2|Bacteria,1MVB9@1224|Proteobacteria,2TRH3@28211|Alphaproteobacteria,2KF6S@204458|Caulobacterales	204458|Caulobacterales	J	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction	pnp	-	2.7.7.8	ko:K00962	ko00230,ko00240,ko03018,map00230,map00240,map03018	M00394	R00437,R00438,R00439,R00440	RC02795	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	-	-	-	KH_1,PNPase,RNase_PH,RNase_PH_C,S1
DYD3_k127_4681674_2	1161401.ASJA01000003_gene2783	6.714e-172	559.0	COG4805@1|root,COG4805@2|Bacteria,1MUBX@1224|Proteobacteria,2TSUQ@28211|Alphaproteobacteria,440WR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF885)	-	-	-	-	-	-	-	-	-	-	-	-	DUF885
DYD3_k127_4681674_4	1122137.AQXF01000004_gene1431	1.566e-142	471.0	COG0168@1|root,COG0168@2|Bacteria,1MUIJ@1224|Proteobacteria,2TRPX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA	-	-	-	ko:K03498	-	-	-	-	ko00000,ko02000	2.A.38.1,2.A.38.4	-	-	TrkH
DYD3_k127_4681674_22	1280947.HY30_01060	2.436e-34	141.0	COG0739@1|root,COG0739@2|Bacteria,1Q5IC@1224|Proteobacteria,2V6QH@28211|Alphaproteobacteria,43XYN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_4681674_5	1479238.JQMZ01000001_gene628	8.875e-130	422.0	COG0623@1|root,COG0623@2|Bacteria,1MV05@1224|Proteobacteria,2TSU4@28211|Alphaproteobacteria,43WHG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Enoyl- acyl-carrier-protein reductase NADH	fabI	GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901576	1.3.1.10,1.3.1.9	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	M00083,M00572	R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671	RC00052,RC00076,RC00120	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_4681674_29	1280947.HY30_06270	3.477e-12	74.0	2A6GW@1|root,30VA3@2|Bacteria,1Q0XD@1224|Proteobacteria,2V70T@28211|Alphaproteobacteria,43YTU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2975)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2975
DYD3_k127_4681674_24	1280947.HY30_06275	6.275e-28	117.0	COG3655@1|root,COG3655@2|Bacteria,1N6VH@1224|Proteobacteria,2UFAM@28211|Alphaproteobacteria,43YNW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Cro/C1-type HTH DNA-binding domain	-	-	-	ko:K07727	-	-	-	-	ko00000,ko03000	-	-	-	HTH_26
DYD3_k127_4681674_17	1280950.HJO_05755	1.01e-41	158.0	COG3793@1|root,COG3793@2|Bacteria	2|Bacteria	P	PFAM Mo-dependent nitrogenase	-	-	-	-	-	-	-	-	-	-	-	-	TerB
DYD3_k127_4681674_27	1217720.ALOX01000176_gene1332	2.835e-22	100.0	COG2336@1|root,COG2336@2|Bacteria,1N7H2@1224|Proteobacteria,2UEKP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	transcriptional regulator	-	-	-	ko:K07172	-	-	-	-	ko00000,ko02048	-	-	-	MazE_antitoxin
DYD3_k127_4681674_23	1217720.ALOX01000176_gene1331	2.855e-34	136.0	COG5573@1|root,COG5573@2|Bacteria,1RKIK@1224|Proteobacteria,2VEQE@28211|Alphaproteobacteria	1224|Proteobacteria	S	Large family of predicted nucleotide-binding domains	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_4681674_3	1120792.JAFV01000001_gene2902	1.587e-168	539.0	COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2TQYV@28211|Alphaproteobacteria,36XX3@31993|Methylocystaceae	28211|Alphaproteobacteria	IQ	Beta-ketoacyl synthase, C-terminal domain	fabB	GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.41	ko:K00647	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
DYD3_k127_4681674_13	1121948.AUAC01000002_gene1911	4.269e-83	279.0	COG0764@1|root,COG0764@2|Bacteria,1MWV8@1224|Proteobacteria,2TV8S@28211|Alphaproteobacteria,43XEG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length	fabA	-	4.2.1.59,5.3.3.14	ko:K01716	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00083	R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07639	RC00831,RC01078,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FabA
DYD3_k127_4681674_19	402881.Plav_3637	1.39e-39	154.0	COG0735@1|root,COG0735@2|Bacteria,1RH58@1224|Proteobacteria,2U75R@28211|Alphaproteobacteria,1JP0B@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	Ferric uptake regulator family	-	-	-	ko:K09826	-	-	-	-	ko00000,ko03000	-	-	-	FUR
DYD3_k127_4681674_8	1280944.HY17_17275	1.026e-118	404.0	COG2133@1|root,COG3474@1|root,COG2133@2|Bacteria,COG3474@2|Bacteria,1MV2E@1224|Proteobacteria,2UAVE@28211|Alphaproteobacteria,43ZK2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Glucose / Sorbosone dehydrogenase	-	-	-	ko:K21430	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrom_C,GSDH
DYD3_k127_4681674_20	1123503.KB908056_gene1996	1.545e-39	153.0	COG3807@1|root,COG3807@2|Bacteria,1RHM2@1224|Proteobacteria,2UA1R@28211|Alphaproteobacteria,2KGPB@204458|Caulobacterales	204458|Caulobacterales	S	Bacterial SH3 domain	-	-	-	-	-	-	-	-	-	-	-	-	SH3_4
DYD3_k127_4681674_9	1280944.HY17_17275	1.036e-118	403.0	COG2133@1|root,COG3474@1|root,COG2133@2|Bacteria,COG3474@2|Bacteria,1MV2E@1224|Proteobacteria,2UAVE@28211|Alphaproteobacteria,43ZK2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Glucose / Sorbosone dehydrogenase	-	-	-	ko:K21430	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrom_C,GSDH
DYD3_k127_4681674_15	1042377.AFPJ01000051_gene33	2.354e-69	246.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,1RYRB@1236|Gammaproteobacteria,46479@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4681674_12	1382303.JPOM01000001_gene521	5.303e-93	312.0	COG0476@1|root,COG0476@2|Bacteria,1MW7H@1224|Proteobacteria,2TRWY@28211|Alphaproteobacteria,2KF6H@204458|Caulobacterales	204458|Caulobacterales	H	PFAM UBA THIF-type NAD FAD binding protein	-	-	2.7.7.80	ko:K21029	ko04122,map04122	-	R07459	RC00043	ko00000,ko00001,ko01000	-	-	-	ThiF
DYD3_k127_4681674_21	331869.BAL199_17943	1.035e-34	140.0	2BK89@1|root,32EN9@2|Bacteria,1RM63@1224|Proteobacteria,2UBED@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF1772
DYD3_k127_4681674_16	1280954.HPO_15046	2.235e-63	226.0	COG0756@1|root,COG0756@2|Bacteria,1RA7P@1224|Proteobacteria,2U7B5@28211|Alphaproteobacteria,43XND@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	dut	GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	3.6.1.23	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	M00053	R02100,R11896	RC00002	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	dUTPase
DYD3_k127_4681674_11	1247963.JPHU01000002_gene2650	5.078e-93	312.0	COG0500@1|root,COG2226@2|Bacteria,1MX8I@1224|Proteobacteria,2TRWR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)	ubiE	-	2.1.1.163,2.1.1.201	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116,M00117	R04990,R04993,R06859,R08774,R09736	RC00003,RC01253,RC01662	ko00000,ko00001,ko00002,ko01000	-	-	-	Ubie_methyltran
DYD3_k127_4681674_10	1449351.RISW2_22755	2.572e-101	339.0	COG0266@1|root,COG0266@2|Bacteria,1MVM5@1224|Proteobacteria,2TS4C@28211|Alphaproteobacteria,4KM7N@93682|Roseivivax	28211|Alphaproteobacteria	L	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates	fpg	-	3.2.2.23,4.2.99.18	ko:K10563	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Fapy_DNA_glyco,H2TH,zf-FPG_IleRS
DYD3_k127_4681674_6	1161401.ASJA01000002_gene2545	8.044e-128	412.0	COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2TRYS@28211|Alphaproteobacteria,43WG0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	MA20_15895	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD3_k127_4681674_25	1117943.SFHH103_03968	2.431e-27	113.0	COG0268@1|root,COG0268@2|Bacteria,1MZ94@1224|Proteobacteria,2UC42@28211|Alphaproteobacteria,4BGAJ@82115|Rhizobiaceae	28211|Alphaproteobacteria	J	Binds directly to 16S ribosomal RNA	rpsT	-	-	ko:K02968	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S20p
DYD3_k127_4682013_1	228405.HNE_1259	4.796e-85	291.0	COG1802@1|root,COG1802@2|Bacteria,1R811@1224|Proteobacteria,2UI3Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator, gntR family	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_4682013_0	1280954.HPO_08084	0.0	1070.0	COG4773@1|root,COG4773@2|Bacteria,1NXPR@1224|Proteobacteria,2U161@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TonB-dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_4708605_0	1276920.ADIAG_03822	1.262e-52	195.0	COG2055@1|root,COG2055@2|Bacteria,2GN93@201174|Actinobacteria	201174|Actinobacteria	C	Belongs to the LDH2 MDH2 oxidoreductase family	-	-	-	ko:K13574	-	-	-	-	ko00000,ko01000	-	-	-	Ldh_2
DYD3_k127_4708605_1	273068.TTE0401	3.838e-29	132.0	COG3039@1|root,COG3039@2|Bacteria,1TPFS@1239|Firmicutes,249JM@186801|Clostridia,42F2V@68295|Thermoanaerobacterales	186801|Clostridia	L	PFAM transposase IS4 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_6,DUF772
DYD3_k127_4739820_2	394221.Mmar10_1932	5.029e-26	113.0	COG1987@1|root,COG1987@2|Bacteria,1N73W@1224|Proteobacteria,2UBX6@28211|Alphaproteobacteria,43YFP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellar biosynthesis	fliQ	-	-	ko:K02420	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_3
DYD3_k127_4739820_1	394221.Mmar10_1931	3.928e-61	219.0	COG1684@1|root,COG1684@2|Bacteria,1NIF4@1224|Proteobacteria,2TTHN@28211|Alphaproteobacteria,440SQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Role in flagellar biosynthesis	fliR	-	-	ko:K02421	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_1
DYD3_k127_4739820_0	394221.Mmar10_1930	1.931e-102	344.0	COG1377@1|root,COG1377@2|Bacteria,1MUWI@1224|Proteobacteria,2TS13@28211|Alphaproteobacteria,43WUC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	FlhB HrpN YscU SpaS family protein	flhB	-	-	ko:K02401	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_2
DYD3_k127_4739820_3	394221.Mmar10_1929	4.26e-13	77.0	COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,43X9M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Histidine kinase	cckA	-	2.7.13.3	ko:K13587	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9,Response_reg
DYD3_k127_4742825_4	1042377.AFPJ01000051_gene33	6.589e-22	107.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,1RYRB@1236|Gammaproteobacteria,46479@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4742825_3	1121124.JNIX01000009_gene2670	1.472e-44	174.0	COG4798@1|root,COG4798@2|Bacteria,1RHGZ@1224|Proteobacteria,2U69N@28211|Alphaproteobacteria,2KH4R@204458|Caulobacterales	204458|Caulobacterales	S	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_23,Methyltransf_25
DYD3_k127_4742825_0	1280954.HPO_09790	2.865e-92	314.0	COG0284@1|root,COG0284@2|Bacteria,1MWH5@1224|Proteobacteria,2UAWF@28211|Alphaproteobacteria,43X26@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the OMP decarboxylase family. Type 2 subfamily	pyrF	-	4.1.1.23	ko:K01591	ko00240,ko01100,map00240,map01100	M00051	R00965	RC00409	ko00000,ko00001,ko00002,ko01000	-	-	-	OMPdecase
DYD3_k127_4742825_1	331869.BAL199_20740	1.258e-67	238.0	COG3921@1|root,COG3921@2|Bacteria,1N3WR@1224|Proteobacteria,2U9V0@28211|Alphaproteobacteria,4BSVH@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Extensin-like protein C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Extensin-like_C
DYD3_k127_4742825_2	450851.PHZ_c3486	7.007e-53	193.0	COG0265@1|root,COG0265@2|Bacteria,1P55H@1224|Proteobacteria,2U4M5@28211|Alphaproteobacteria,2KFTT@204458|Caulobacterales	204458|Caulobacterales	O	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	-	-	-	-	-	-	-	-	-	-	-	-	Trypsin_2
DYD3_k127_4828982_0	1192868.CAIU01000007_gene675	9.401e-141	464.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,2TR6Q@28211|Alphaproteobacteria,43H2U@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	DEAD DEAH box helicase	rhlE	-	3.6.4.13	ko:K11927	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	DEAD,Helicase_C
DYD3_k127_4828982_1	1161401.ASJA01000001_gene341	3.57e-55	199.0	COG3764@1|root,COG3764@2|Bacteria,1P806@1224|Proteobacteria,2U0A5@28211|Alphaproteobacteria,43YMI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Sortase family	-	-	3.4.22.70	ko:K07284	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Sortase
DYD3_k127_4831587_16	1142394.PSMK_20850	9.762e-48	175.0	COG0446@1|root,COG0446@2|Bacteria,2IWUZ@203682|Planctomycetes	203682|Planctomycetes	P	Rhodanese Homology Domain	-	-	1.18.1.3	ko:K00529	ko00071,ko00360,ko01120,ko01220,map00071,map00360,map01120,map01220	M00545	R02000,R06782,R06783	RC00098	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_dim,Rhodanese
DYD3_k127_4831587_14	1282360.ABAC460_22100	3.21e-49	177.0	COG0633@1|root,COG0633@2|Bacteria,1RHDC@1224|Proteobacteria,2U97J@28211|Alphaproteobacteria,2KGS1@204458|Caulobacterales	204458|Caulobacterales	C	ferredoxin	-	-	-	-	-	-	-	-	-	-	-	-	Fer2
DYD3_k127_4831587_2	1161401.ASJA01000011_gene1484	3.895e-224	721.0	COG0642@1|root,COG2205@2|Bacteria,1MVY8@1224|Proteobacteria,2TS5B@28211|Alphaproteobacteria,43WPK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Tyrosine kinase	divL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_7,PAS_8
DYD3_k127_4831587_24	1121948.AUAC01000002_gene1757	1.981e-27	119.0	COG0810@1|root,COG0810@2|Bacteria,1PVJF@1224|Proteobacteria,2UTSI@28211|Alphaproteobacteria,43YIS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Gram-negative bacterial TonB protein C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	TonB_C
DYD3_k127_4831587_10	595460.RRSWK_01424	1.108e-86	304.0	28J2H@1|root,2Z8YZ@2|Bacteria,2IWTN@203682|Planctomycetes	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_1	228405.HNE_0788	2.559e-242	755.0	COG0499@1|root,COG0499@2|Bacteria,1MUQ2@1224|Proteobacteria,2TSJY@28211|Alphaproteobacteria,43WRF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine	ahcY	GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657	3.3.1.1	ko:K01251	ko00270,ko01100,map00270,map01100	M00035	R00192,R04936	RC00056,RC00069,RC01161,RC01243	ko00000,ko00001,ko00002,ko01000,ko01009,ko04147	-	-	-	AdoHcyase,AdoHcyase_NAD
DYD3_k127_4831587_26	715451.ambt_12010	4.864e-17	94.0	2CBAE@1|root,31814@2|Bacteria,1R3F3@1224|Proteobacteria,1T675@1236|Gammaproteobacteria,46DFK@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_17	366602.Caul_2491	6.548e-44	166.0	COG1595@1|root,COG1595@2|Bacteria,1N2W7@1224|Proteobacteria,2UE5M@28211|Alphaproteobacteria,2KINT@204458|Caulobacterales	204458|Caulobacterales	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_4831587_27	929713.NIASO_11115	1.062e-16	89.0	COG0526@1|root,COG0526@2|Bacteria,4NT1R@976|Bacteroidetes,1IT7Q@117747|Sphingobacteriia	976|Bacteroidetes	CO	Protein of unknown function, DUF255	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_7
DYD3_k127_4831587_28	314254.OA2633_11208	2.56e-15	85.0	COG1925@1|root,COG1925@2|Bacteria,1N6RM@1224|Proteobacteria,2UC0H@28211|Alphaproteobacteria,43YEI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	phosphocarrier protein HPr	ptsH	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006808,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0044424,GO:0044464,GO:0050789,GO:0051179,GO:0051234,GO:0065007,GO:0071702	-	ko:K11189	-	-	-	-	ko00000,ko02000	4.A.2.1	-	-	PTS-HPr
DYD3_k127_4831587_18	517722.AEUE01000007_gene301	5.728e-41	156.0	COG2893@1|root,COG2893@2|Bacteria,1RHH7@1224|Proteobacteria,2U9E5@28211|Alphaproteobacteria,2K4MZ@204457|Sphingomonadales	204457|Sphingomonadales	G	PTS fructose transporter subunit IIA	-	-	2.7.1.191	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	M00276	R02630	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.6.1	-	-	EIIA-man
DYD3_k127_4831587_4	1292034.OR37_03880	1.145e-138	460.0	COG5002@1|root,COG5002@2|Bacteria,1QU7C@1224|Proteobacteria,2TWBW@28211|Alphaproteobacteria,2KFU6@204458|Caulobacterales	204458|Caulobacterales	T	Histidine kinase	-	-	2.7.13.3	ko:K14980	ko02020,map02020	M00520	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,Sensor_TM1,Stimulus_sens_1
DYD3_k127_4831587_6	228405.HNE_1408	9.837e-112	381.0	COG0745@1|root,COG0745@2|Bacteria,1MVCB@1224|Proteobacteria,2TR43@28211|Alphaproteobacteria,43WHK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	chvI	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141	-	ko:K14981	ko02020,map02020	M00520	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_4831587_11	604331.AUHY01000016_gene1393	4.727e-80	285.0	COG1680@1|root,COG1680@2|Bacteria,1WMGA@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_4831587_9	551789.ATVJ01000001_gene1593	6.445e-90	307.0	COG0840@1|root,COG0840@2|Bacteria,1P0ZT@1224|Proteobacteria,2TUX8@28211|Alphaproteobacteria,43ZSW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	Cache domain	MA20_30520	-	-	-	-	-	-	-	-	-	-	-	MCPsignal,dCache_1
DYD3_k127_4831587_8	394221.Mmar10_0073	5.877e-99	344.0	28IA1@1|root,2Z8CN@2|Bacteria,1QTRI@1224|Proteobacteria,2U31S@28211|Alphaproteobacteria,43XU5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_13	1112216.JH594425_gene474	1.555e-60	229.0	2DM58@1|root,31S4C@2|Bacteria,1RGAH@1224|Proteobacteria,2U7JN@28211|Alphaproteobacteria,2K3DA@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_15	717785.HYPMC_2330	1.22e-48	196.0	28TR1@1|root,2ZFY7@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_0	1292034.OR37_03117	0.0	1154.0	COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1MU31@1224|Proteobacteria,2TRJF@28211|Alphaproteobacteria,2KF96@204458|Caulobacterales	204458|Caulobacterales	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	polA	-	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	-	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1
DYD3_k127_4831587_21	1121033.AUCF01000008_gene5691	1.268e-33	134.0	COG1846@1|root,COG1846@2|Bacteria,1RJNN@1224|Proteobacteria,2UCG5@28211|Alphaproteobacteria,2JT2Y@204441|Rhodospirillales	204441|Rhodospirillales	K	COG1846 Transcriptional regulators	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_4831587_7	394221.Mmar10_1302	2.354e-104	354.0	COG1835@1|root,COG1835@2|Bacteria,1N4D5@1224|Proteobacteria,2U1QI@28211|Alphaproteobacteria,43YYP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	ko:K11941	-	-	-	-	ko00000,ko01000	-	-	-	Acyl_transf_3
DYD3_k127_4831587_30	1229204.AMYY01000024_gene2944	1.099e-10	70.0	2DQ6X@1|root,3350H@2|Bacteria,1NDX8@1224|Proteobacteria,2VGWY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_22	190650.CC_2207	2.442e-33	138.0	2EATF@1|root,33ZAA@2|Bacteria,1NXQ7@1224|Proteobacteria,2USTB@28211|Alphaproteobacteria,2KIYR@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_31	190650.CC_2207	1.012e-09	70.0	2EATF@1|root,33ZAA@2|Bacteria,1NXQ7@1224|Proteobacteria,2USTB@28211|Alphaproteobacteria,2KIYR@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_19	69395.JQLZ01000006_gene1986	2.452e-37	143.0	COG0640@1|root,COG0640@2|Bacteria,1QVGE@1224|Proteobacteria,2TWFD@28211|Alphaproteobacteria,2KK7D@204458|Caulobacterales	204458|Caulobacterales	K	Winged helix DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_34
DYD3_k127_4831587_29	555793.WSK_2875	1.798e-11	76.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4831587_20	1265503.KB905178_gene3906	3.592e-34	136.0	COG3682@1|root,COG3682@2|Bacteria,1N1AM@1224|Proteobacteria,1SB8J@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Penicillinase repressor	-	-	-	-	-	-	-	-	-	-	-	-	Penicillinase_R
DYD3_k127_4831587_25	1122179.KB890454_gene2961	1.78e-21	110.0	COG0666@1|root,COG4219@1|root,COG0666@2|Bacteria,COG4219@2|Bacteria,4NKKC@976|Bacteroidetes,1INTG@117747|Sphingobacteriia	976|Bacteroidetes	KT	PFAM Peptidase M56, BlaR1	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M56
DYD3_k127_4831587_23	1128912.GMES_0818	6.855e-29	123.0	COG3772@1|root,COG3772@2|Bacteria,1MZJD@1224|Proteobacteria,1S99W@1236|Gammaproteobacteria,4691F@72275|Alteromonadaceae	1236|Gammaproteobacteria	G	Phage lysozyme	-	-	3.2.1.17	ko:K01185	-	-	-	-	ko00000,ko01000	-	-	-	Phage_lysozyme
DYD3_k127_4831587_3	314254.OA2633_13210	1.468e-151	493.0	COG0260@1|root,COG0260@2|Bacteria,1MUIN@1224|Proteobacteria,2TSI6@28211|Alphaproteobacteria,43WCN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the peptidase M17 family	pepA	-	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17
DYD3_k127_4831587_34	999611.KI421504_gene3091	0.0001107	52.0	COG1652@1|root,COG1652@2|Bacteria,1MWMR@1224|Proteobacteria,2U7UH@28211|Alphaproteobacteria,280NF@191028|Leisingera	28211|Alphaproteobacteria	S	Lysin motif	lysM	-	-	-	-	-	-	-	-	-	-	-	LysM
DYD3_k127_4831587_12	1479238.JQMZ01000001_gene972	3.963e-61	220.0	COG5010@1|root,COG5010@2|Bacteria,1MVTK@1224|Proteobacteria,2TVBA@28211|Alphaproteobacteria,43XWI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	COG0457 FOG TPR repeat	MA20_18455	-	-	-	-	-	-	-	-	-	-	-	TPR_10,TPR_12,TPR_16,TPR_19,TPR_2,TPR_4,TPR_8
DYD3_k127_4831587_5	1280944.HY17_16895	7.204e-115	393.0	COG0784@1|root,COG5002@1|root,COG0784@2|Bacteria,COG5002@2|Bacteria,1NC9X@1224|Proteobacteria,2TWE5@28211|Alphaproteobacteria,4414E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Sensory box sensor histidine kinase response regulator	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_3,PAS_9,Response_reg
DYD3_k127_4831587_35	1476583.DEIPH_ctg037orf0026	0.0001385	53.0	COG5001@1|root,COG5001@2|Bacteria	2|Bacteria	T	cyclic-guanylate-specific phosphodiesterase activity	-	-	-	-	-	-	-	-	-	-	-	-	GAF,GGDEF,HAMP,PAS,PAS_3,PAS_4,PAS_7,PAS_8,PAS_9,Phosphonate-bd
DYD3_k127_4831587_33	1123060.JONP01000068_gene4320	3.752e-06	49.0	COG3335@1|root,COG3335@2|Bacteria	2|Bacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
DYD3_k127_4850233_1	1547437.LL06_24365	3.165e-70	250.0	COG2267@1|root,COG2267@2|Bacteria,1NYI4@1224|Proteobacteria,2VF6T@28211|Alphaproteobacteria,43RJX@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
DYD3_k127_4850233_0	296591.Bpro_4842	1.894e-152	494.0	COG0491@1|root,COG0607@1|root,COG0491@2|Bacteria,COG0607@2|Bacteria,1MUDN@1224|Proteobacteria,2VHMC@28216|Betaproteobacteria,4AA42@80864|Comamonadaceae	28216|Betaproteobacteria	P	PFAM beta-lactamase domain protein	ycbL	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4874751_0	1035191.HMPREF0185_00124	9.603e-139	475.0	COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,2TTN6@28211|Alphaproteobacteria,2KG3A@204458|Caulobacterales	204458|Caulobacterales	P	TonB-dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,STN,TonB_dep_Rec
DYD3_k127_4874751_1	1122603.ATVI01000005_gene3546	2.999e-14	77.0	COG3712@1|root,COG3712@2|Bacteria,1QFP6@1224|Proteobacteria,1RZAU@1236|Gammaproteobacteria,1XCPF@135614|Xanthomonadales	135614|Xanthomonadales	PT	FecR protein	-	-	-	-	-	-	-	-	-	-	-	-	FecR
DYD3_k127_4894314_12	627192.SLG_31400	7.003e-66	239.0	COG2960@1|root,COG2960@2|Bacteria,1RGT9@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_4894314_3	1340493.JNIF01000004_gene920	1.214e-168	559.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5
DYD3_k127_4894314_17	1279017.AQYJ01000028_gene2525	7.04e-39	158.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,1RYRB@1236|Gammaproteobacteria,46479@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4894314_13	627192.SLG_31430	2.582e-59	220.0	COG1414@1|root,COG1414@2|Bacteria,1QYTM@1224|Proteobacteria,2U04P@28211|Alphaproteobacteria,2K2VC@204457|Sphingomonadales	204457|Sphingomonadales	K	helix_turn_helix isocitrate lyase regulation	-	-	-	ko:K02624	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
DYD3_k127_4894314_9	13690.CP98_02828	3.894e-104	355.0	COG0477@1|root,COG2814@2|Bacteria,1MVQQ@1224|Proteobacteria,2TRBF@28211|Alphaproteobacteria,2K8W9@204457|Sphingomonadales	204457|Sphingomonadales	EGP	Uncharacterised MFS-type transporter YbfB	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_4
DYD3_k127_4894314_0	1449049.JONW01000008_gene743	0.0	1243.0	COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,2TSHH@28211|Alphaproteobacteria,2KEY9@204458|Caulobacterales	204458|Caulobacterales	C	Pyruvate ferredoxin flavodoxin oxidoreductase	-	-	1.2.7.8	ko:K00179,ko:K04090	-	-	-	-	br01601,ko00000,ko01000	-	-	-	POR,TPP_enzyme_C
DYD3_k127_4894314_11	450851.PHZ_c0604	1.345e-69	239.0	COG1522@1|root,COG1522@2|Bacteria,1RHP2@1224|Proteobacteria,2U6ES@28211|Alphaproteobacteria,2KGAI@204458|Caulobacterales	204458|Caulobacterales	K	helix_turn_helix ASNC type	-	-	-	ko:K05800	-	-	-	-	ko00000,ko03000	-	-	-	AsnC_trans_reg,HTH_24
DYD3_k127_4894314_7	1161401.ASJA01000001_gene295	6.547e-146	473.0	COG0477@1|root,COG2814@2|Bacteria,1MVSH@1224|Proteobacteria,2TUEW@28211|Alphaproteobacteria,43WI7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EGP	COG0477 Permeases of the major facilitator superfamily	tetA	-	-	ko:K08151	-	M00668	-	-	ko00000,ko00002,ko01504,ko02000	2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75	-	-	MFS_1,Sugar_tr
DYD3_k127_4894314_2	394221.Mmar10_0697	9.024e-174	554.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,43W8U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_4894314_19	1280946.HY29_11230	1.071e-17	88.0	COG3360@1|root,COG3360@2|Bacteria,1PURU@1224|Proteobacteria,2V0YI@28211|Alphaproteobacteria,43YVT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Dodecin	-	-	-	-	-	-	-	-	-	-	-	-	Dodecin
DYD3_k127_4894314_10	1121015.N789_09600	4.985e-99	338.0	COG1680@1|root,COG1680@2|Bacteria,1MY01@1224|Proteobacteria,1RNUI@1236|Gammaproteobacteria,1X480@135614|Xanthomonadales	135614|Xanthomonadales	V	beta-lactamase	ampC3	-	3.5.2.6	ko:K01467	ko01501,ko02020,map01501,map02020	M00628	R06363	RC01499	ko00000,ko00001,ko00002,ko01000	-	-	-	Beta-lactamase
DYD3_k127_4894314_1	1280954.HPO_10882	4.973e-174	553.0	COG0482@1|root,COG0482@2|Bacteria,1MUT1@1224|Proteobacteria,2TQU7@28211|Alphaproteobacteria,43X8G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	mnmA	-	2.8.1.13	ko:K00566	ko04122,map04122	-	R08700	RC02313,RC02315	ko00000,ko00001,ko01000,ko03016	-	-	-	tRNA_Me_trans
DYD3_k127_4894314_15	551789.ATVJ01000001_gene1392	4.491e-41	173.0	COG1344@1|root,COG1344@2|Bacteria,1MVTB@1224|Proteobacteria,2TVAK@28211|Alphaproteobacteria,43Y5M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	COG1344 Flagellin and related hook-associated proteins	flgL	-	-	ko:K02397	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
DYD3_k127_4894314_4	1161401.ASJA01000003_gene2889	7.865e-163	538.0	COG1256@1|root,COG1256@2|Bacteria,1MV2M@1224|Proteobacteria,2TV1B@28211|Alphaproteobacteria,43WWY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgK	-	-	ko:K02396	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_4894314_18	1161401.ASJA01000003_gene2890	2.466e-19	102.0	COG3144@1|root,COG3144@2|Bacteria,1N7X4@1224|Proteobacteria,2UF9W@28211|Alphaproteobacteria,43YRS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellar hook-length control protein FliK	-	-	-	ko:K02414,ko:K10565	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_hook
DYD3_k127_4894314_14	1161401.ASJA01000003_gene2891	1.241e-52	194.0	COG1843@1|root,COG1843@2|Bacteria,1MXCG@1224|Proteobacteria,2UCHH@28211|Alphaproteobacteria,43Y5S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Required for flagellar hook formation. May act as a scaffolding protein	flgD	-	-	ko:K02389	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FLgD_tudor,FlgD,FlgD_ig
DYD3_k127_4894314_6	394221.Mmar10_0688	1.195e-151	492.0	COG1749@1|root,COG1749@2|Bacteria,1MU5J@1224|Proteobacteria,2TSF2@28211|Alphaproteobacteria,43X4Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellar hook protein FlgE	flgE	-	-	ko:K02390	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlaE,Flg_bb_rod,Flg_bbr_C
DYD3_k127_4894314_16	1123503.KB908063_gene658	1.353e-40	154.0	2AMHV@1|root,31CDG@2|Bacteria,1RGVA@1224|Proteobacteria,2U98Q@28211|Alphaproteobacteria,2KGX4@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF1153)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1153
DYD3_k127_4894314_8	551789.ATVJ01000001_gene1398	1.693e-136	454.0	COG1766@1|root,COG1766@2|Bacteria,1MUQR@1224|Proteobacteria,2TR6J@28211|Alphaproteobacteria,43W5D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	The M ring may be actively involved in energy transduction	fliF	-	-	ko:K02409	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	YscJ_FliF,YscJ_FliF_C
DYD3_k127_4894314_5	1479238.JQMZ01000001_gene2396	1.218e-155	496.0	COG1536@1|root,COG1536@2|Bacteria,1MV9X@1224|Proteobacteria,2TRIV@28211|Alphaproteobacteria,43X8W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	flagellar motor switch protein	fliG	-	-	ko:K02410	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliG_C,FliG_M,FliG_N
DYD3_k127_4916819_10	247633.GP2143_17796	2.505e-27	122.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,1ST6N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4916819_5	450851.PHZ_c3052	4.623e-64	224.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U6Z6@28211|Alphaproteobacteria,2KGN6@204458|Caulobacterales	204458|Caulobacterales	C	2Fe-2S -binding domain protein	-	-	1.3.99.16	ko:K07302	-	-	-	-	ko00000,ko01000	-	-	-	Fer2,Fer2_2
DYD3_k127_4916819_0	366602.Caul_1417	4.71e-221	710.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,2KG0Z@204458|Caulobacterales	204458|Caulobacterales	C	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding	-	-	1.3.99.16	ko:K07303	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C2
DYD3_k127_4916819_12	555793.WSK_1817	4.993e-10	71.0	COG4922@1|root,COG4922@2|Bacteria	555793.WSK_1817|-	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4916819_9	397945.Aave_1955	6.703e-36	150.0	COG4922@1|root,COG4922@2|Bacteria,1RDM5@1224|Proteobacteria,2VSBK@28216|Betaproteobacteria,4AIX6@80864|Comamonadaceae	28216|Betaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL,SnoaL_2
DYD3_k127_4916819_6	485913.Krac_7751	1.016e-60	218.0	COG0388@1|root,COG0388@2|Bacteria	2|Bacteria	S	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	-	3.5.1.53,3.5.5.1	ko:K01501,ko:K12251	ko00330,ko00380,ko00460,ko00627,ko00643,ko00910,ko01100,ko01120,map00330,map00380,map00460,map00627,map00643,map00910,map01100,map01120	-	R00540,R01152,R01887,R03093,R03542,R05591,R07855	RC00096,RC00315,RC00325,RC00617,RC00959,RC02811	ko00000,ko00001,ko01000	-	-	-	5-FTHF_cyc-lig,CN_hydrolase
DYD3_k127_4916819_8	1089552.KI911559_gene1366	2.794e-45	169.0	COG1917@1|root,COG1917@2|Bacteria,1RH1V@1224|Proteobacteria,2U990@28211|Alphaproteobacteria,2JT8J@204441|Rhodospirillales	204441|Rhodospirillales	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_4916819_3	1282360.ABAC460_13155	2.553e-93	314.0	COG4188@1|root,COG4188@2|Bacteria,1NAS2@1224|Proteobacteria,2UH1M@28211|Alphaproteobacteria,2KIK3@204458|Caulobacterales	204458|Caulobacterales	S	dienelactone hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4916819_1	1090318.ATTI01000001_gene969	9.905e-215	690.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TQMV@28211|Alphaproteobacteria,2K0W1@204457|Sphingomonadales	204457|Sphingomonadales	G	Glucose dehydrogenase	-	-	1.1.5.2,1.1.5.8	ko:K00117,ko:K05358	ko00030,ko00400,ko01100,ko01110,ko01130,map00030,map00400,map01100,map01110,map01130	-	R01873,R02415,R06620	RC00066,RC00154,RC00206	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
DYD3_k127_4916819_11	234267.Acid_2558	1.15e-22	103.0	COG2010@1|root,COG2010@2|Bacteria	2|Bacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
DYD3_k127_4916819_4	1267535.KB906767_gene3591	3.622e-90	310.0	COG2333@1|root,COG2333@2|Bacteria,3Y323@57723|Acidobacteria,2JHP4@204432|Acidobacteriia	204432|Acidobacteriia	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4916819_2	1340493.JNIF01000004_gene624	1.635e-107	357.0	COG3836@1|root,COG3836@2|Bacteria,3Y5ZN@57723|Acidobacteria	57723|Acidobacteria	G	Belongs to the HpcH HpaI aldolase family	-	-	4.1.2.52	ko:K02510	ko00350,ko01120,map00350,map01120	-	R01645,R01647	RC00307,RC00572,RC00574,RC03057	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
DYD3_k127_4916819_13	1122214.AQWH01000016_gene1611	4.548e-07	53.0	28JUV@1|root,2Z9JV@2|Bacteria,1R9BS@1224|Proteobacteria,2TQV7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4916819_14	1380380.JIAX01000015_gene2899	0.000124	51.0	28JUV@1|root,2Z9JV@2|Bacteria,1R9BS@1224|Proteobacteria,2TQV7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4916819_7	288000.BBta_p0061	1.475e-49	179.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	MA20_15620	-	-	ko:K07787	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4	-	-	ACR_tran
DYD3_k127_4931080_6	1411123.JQNH01000001_gene1167	2.419e-05	46.0	COG3293@1|root,COG3293@2|Bacteria,1P5HD@1224|Proteobacteria,2TUQI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Transposase and inactivated	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2,DUF4096
DYD3_k127_4931080_3	1238182.C882_3680	3.928e-66	235.0	COG0730@1|root,COG0730@2|Bacteria,1MVY3@1224|Proteobacteria,2TU6M@28211|Alphaproteobacteria,2JRRQ@204441|Rhodospirillales	204441|Rhodospirillales	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
DYD3_k127_4931080_5	1007104.SUS17_424	1.3e-38	149.0	COG0314@1|root,COG0314@2|Bacteria,1RGUX@1224|Proteobacteria,2U73K@28211|Alphaproteobacteria,2K4HA@204457|Sphingomonadales	204457|Sphingomonadales	H	Molybdopterin converting factor, large subunit	moaE	-	2.8.1.12	ko:K03635	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R09395	RC02507	ko00000,ko00001,ko01000	-	-	-	MoaE
DYD3_k127_4931080_4	394221.Mmar10_2715	3.185e-57	205.0	COG0315@1|root,COG0315@2|Bacteria,1RCYZ@1224|Proteobacteria,2U747@28211|Alphaproteobacteria,43Y0B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP)	moaC	-	4.6.1.17	ko:K03637	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R11372	RC03425	ko00000,ko00001,ko01000	-	-	-	MoaC
DYD3_k127_4931080_0	394221.Mmar10_2716	5.711e-106	357.0	COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,2TQRI@28211|Alphaproteobacteria,43WID@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	COG0303 Molybdopterin biosynthesis enzyme	moeA2	-	2.10.1.1	ko:K03750	ko00790,ko01100,map00790,map01100	-	R09735	RC03462	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N
DYD3_k127_4931080_2	631454.N177_1101	9.672e-92	307.0	COG4149@1|root,COG4149@2|Bacteria,1MUXR@1224|Proteobacteria,2TSYJ@28211|Alphaproteobacteria,1JP61@119043|Rhodobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	modB	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944	-	ko:K02018	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.8	-	-	BPD_transp_1
DYD3_k127_4931080_1	419610.Mext_3635	3.196e-94	331.0	COG4148@1|root,COG4148@2|Bacteria,1MU8K@1224|Proteobacteria,2TR1Z@28211|Alphaproteobacteria,1JSY3@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system	modC	-	3.6.3.29	ko:K02017	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.8	-	-	ABC_tran,TOBE
DYD3_k127_4944549_0	1123229.AUBC01000014_gene2892	0.0	1049.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	ttgE	-	-	ko:K18989	-	M00720	-	-	ko00000,ko00002,ko02000	2.A.6.2.30	-	-	ACR_tran
DYD3_k127_4944549_2	1280952.HJA_02961	1.067e-183	589.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQU2@28211|Alphaproteobacteria,43XCZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG1960 Acyl-CoA dehydrogenases	-	-	-	ko:K09456	-	-	-	-	ko00000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M
DYD3_k127_4944549_9	1112216.JH594425_gene1850	3.739e-32	130.0	COG3193@1|root,COG3193@2|Bacteria,1N08N@1224|Proteobacteria,2U5ES@28211|Alphaproteobacteria,2K5SP@204457|Sphingomonadales	204457|Sphingomonadales	S	Haem-degrading	-	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
DYD3_k127_4944549_11	228405.HNE_0318	3.541e-17	87.0	COG2198@1|root,COG2198@2|Bacteria,1N1XD@1224|Proteobacteria,2UE9N@28211|Alphaproteobacteria,43YRE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG2198 FOG HPt domain	-	-	-	-	-	-	-	-	-	-	-	-	Hpt
DYD3_k127_4944549_10	1280946.HY29_07665	9.413e-27	117.0	COG3428@1|root,COG3428@2|Bacteria,1N9PB@1224|Proteobacteria,2TUD0@28211|Alphaproteobacteria,43Y8C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Bacterial PH domain	-	-	-	-	-	-	-	-	-	-	-	-	bPH_2
DYD3_k127_4944549_8	243090.RB601	2.163e-44	181.0	COG0666@1|root,COG0666@2|Bacteria,2J1DP@203682|Planctomycetes	203682|Planctomycetes	S	Ankyrin repeat	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2
DYD3_k127_4944549_4	243090.RB598	3.466e-104	368.0	COG2960@1|root,COG2960@2|Bacteria,2J2KP@203682|Planctomycetes	203682|Planctomycetes	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_4944549_1	1340493.JNIF01000004_gene920	1.347e-214	692.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5
DYD3_k127_4944549_5	627192.SLG_09530	1.347e-69	269.0	2ARZV@1|root,31HC0@2|Bacteria,1PAF4@1224|Proteobacteria	1224|Proteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_4944549_6	633149.Bresu_2051	1.893e-57	222.0	COG2207@1|root,COG2207@2|Bacteria,1MXT9@1224|Proteobacteria,2U0UP@28211|Alphaproteobacteria,2KHXI@204458|Caulobacterales	204458|Caulobacterales	K	PFAM helix-turn-helix- domain containing protein AraC type	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
DYD3_k127_4944549_7	1122223.KB890687_gene2931	9.066e-55	205.0	COG1414@1|root,COG1414@2|Bacteria,1WIBR@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	K	transcriptional regulator	-	-	-	ko:K02624,ko:K13641	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
DYD3_k127_4944549_12	322710.Avin_21280	0.0001788	53.0	29717@1|root,2ZU9N@2|Bacteria,1RJ7P@1224|Proteobacteria,1SIQS@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Tripartite tricarboxylate transporter TctB family	-	-	-	-	-	-	-	-	-	-	-	-	TctB
DYD3_k127_4944549_3	1121033.AUCF01000014_gene1321	1.117e-172	558.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,2JPTU@204441|Rhodospirillales	204441|Rhodospirillales	S	Tripartite tricarboxylate transporter TctA family	-	-	-	-	-	-	-	-	-	-	-	-	TctA
DYD3_k127_5020443_10	1120956.JHZK01000005_gene2257	5.03e-64	222.0	COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,2TT3T@28211|Alphaproteobacteria,1JNPN@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Aconitase family (aconitate hydratase)	acnA	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0045333,GO:0046459,GO:0047456,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:1901363	4.2.1.3	ko:K01681	ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00173,M00740	R01324,R01325,R01900	RC00497,RC00498,RC00618	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase,Aconitase_C
DYD3_k127_5020443_15	633149.Bresu_0453	2.27e-50	188.0	COG5429@1|root,COG5429@2|Bacteria,1MW6R@1224|Proteobacteria,2U33F@28211|Alphaproteobacteria,2KGK1@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF1223)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1223
DYD3_k127_5020443_22	1280954.HPO_09273	2.143e-32	144.0	2DM5E@1|root,31SVN@2|Bacteria,1MYKR@1224|Proteobacteria,2U9KT@28211|Alphaproteobacteria,43Y79@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4340)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4340
DYD3_k127_5020443_2	1122613.ATUP01000001_gene1263	1.595e-125	424.0	COG3225@1|root,COG3225@2|Bacteria,1MY63@1224|Proteobacteria,2U1SX@28211|Alphaproteobacteria,43XB0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	ABC-type uncharacterized transport system	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_transp_aux
DYD3_k127_5020443_9	402881.Plav_1398	1.229e-75	275.0	COG1277@1|root,COG1277@2|Bacteria,1NZZ9@1224|Proteobacteria,2TUXR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	ABC transporter permease	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_2,ABC2_membrane_3
DYD3_k127_5020443_7	394221.Mmar10_2909	1.549e-82	281.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2U2JX@28211|Alphaproteobacteria,43XH7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	ABC transporter	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_5020443_19	991905.SL003B_0439	1.472e-35	144.0	2CCMQ@1|root,32RW3@2|Bacteria,1MZHB@1224|Proteobacteria,2UCC9@28211|Alphaproteobacteria,4BR1G@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2794)	MA20_43795	-	-	-	-	-	-	-	-	-	-	-	DUF2794
DYD3_k127_5020443_5	1123503.KB908056_gene1937	1.973e-87	297.0	COG0670@1|root,COG0670@2|Bacteria,1MU69@1224|Proteobacteria,2TRSF@28211|Alphaproteobacteria,2KEXB@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the BI1 family	-	-	-	ko:K06890	-	-	-	-	ko00000	-	-	-	Bax1-I
DYD3_k127_5020443_24	1121440.AUMA01000021_gene199	2.135e-19	99.0	COG2755@1|root,COG2755@2|Bacteria,1RCXZ@1224|Proteobacteria,42SUC@68525|delta/epsilon subdivisions,2WPR4@28221|Deltaproteobacteria,2MAWJ@213115|Desulfovibrionales	28221|Deltaproteobacteria	E	PFAM lipolytic protein G-D-S-L family	-	-	3.1.1.5	ko:K10804	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	Lipase_GDSL_2
DYD3_k127_5020443_13	1161401.ASJA01000014_gene1026	3.193e-51	195.0	COG1514@1|root,COG1514@2|Bacteria,1RDB2@1224|Proteobacteria,2U7FV@28211|Alphaproteobacteria,43Y4Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester	ligT	-	3.1.4.58	ko:K01975	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	LigT_PEase
DYD3_k127_5020443_4	1123229.AUBC01000014_gene2952	8.247e-95	325.0	COG0846@1|root,COG0846@2|Bacteria,1MUK1@1224|Proteobacteria,2TV1Q@28211|Alphaproteobacteria,3JTG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form	cobB	-	-	ko:K12410	-	-	-	-	ko00000,ko01000	-	-	-	SIR2
DYD3_k127_5020443_25	1029823.AFIE01000021_gene3175	4.286e-15	78.0	2BVRC@1|root,2ZKDT@2|Bacteria,1P8QP@1224|Proteobacteria,1RSXZ@1236|Gammaproteobacteria,3NRXD@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5020443_14	1449049.JONW01000005_gene1836	1.697e-50	183.0	COG3824@1|root,COG3824@2|Bacteria,1N18M@1224|Proteobacteria,2UBUK@28211|Alphaproteobacteria,2KGNW@204458|Caulobacterales	204458|Caulobacterales	S	Zincin-like metallopeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Zincin_1
DYD3_k127_5020443_8	644966.Tmar_1962	1.317e-78	286.0	COG1479@1|root,COG1479@2|Bacteria,1TPAT@1239|Firmicutes,24CP3@186801|Clostridia,3WCXP@538999|Clostridiales incertae sedis	186801|Clostridia	S	Protein of unknown function (DUF1524)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1524,DUF262
DYD3_k127_5020443_18	1479238.JQMZ01000001_gene597	9.357e-39	165.0	COG5321@1|root,COG5321@2|Bacteria,1RDXW@1224|Proteobacteria,2U73Y@28211|Alphaproteobacteria,43Y8R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	DNA repair protein MmcB-like	MA20_23405	-	-	-	-	-	-	-	-	-	-	-	MmcB-like
DYD3_k127_5020443_11	1121124.JNIX01000011_gene1739	4.547e-54	197.0	COG2030@1|root,COG2030@2|Bacteria,1RHPH@1224|Proteobacteria,2U9GG@28211|Alphaproteobacteria,2KGB0@204458|Caulobacterales	204458|Caulobacterales	I	PFAM MaoC domain protein dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
DYD3_k127_5020443_20	551789.ATVJ01000001_gene667	1.149e-33	149.0	COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,2TRZ1@28211|Alphaproteobacteria,43WN8@69657|Hyphomonadaceae	2|Bacteria	O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	-	-	-	ko:K03686,ko:K04082,ko:K05516	-	-	-	-	ko00000,ko03029,ko03036,ko03110	-	-	-	Cytochrom_CIII,Cytochrom_c3_2,DnaJ_C,DnaJ_CXXCXGXG
DYD3_k127_5020443_17	244582.JQAK01000004_gene390	2.876e-39	167.0	COG0790@1|root,COG0790@2|Bacteria,1R83I@1224|Proteobacteria	1224|Proteobacteria	S	Sel1-like repeats.	-	-	-	-	-	-	-	-	-	-	-	-	DUF4034,Sel1
DYD3_k127_5020443_6	1479238.JQMZ01000001_gene596	3.425e-83	280.0	COG4567@1|root,COG4567@2|Bacteria,1RD7J@1224|Proteobacteria,2TSK7@28211|Alphaproteobacteria,43WQ4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	KT	COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	regA	GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007	-	ko:K15012	ko02020,map02020	M00523	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg
DYD3_k127_5020443_3	1123059.KB823011_gene1922	1.79e-115	386.0	COG0642@1|root,COG0642@2|Bacteria,1QU3Y@1224|Proteobacteria,2TVYH@28211|Alphaproteobacteria,440V0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	regB	-	2.7.13.3	ko:K15011	ko02020,map02020	M00523	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA
DYD3_k127_5020443_16	1123503.KB908056_gene1965	1.121e-49	187.0	COG1999@1|root,COG1999@2|Bacteria,1RHJ8@1224|Proteobacteria,2U0Q3@28211|Alphaproteobacteria,2KJSV@204458|Caulobacterales	204458|Caulobacterales	S	SCO1/SenC	-	-	-	ko:K07152	-	-	-	-	ko00000,ko03029	-	-	-	SCO1-SenC
DYD3_k127_5020443_0	1161401.ASJA01000020_gene620	4.509e-174	557.0	COG4553@1|root,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,2TQXW@28211|Alphaproteobacteria,43WQT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG4553 Poly-beta-hydroxyalkanoate depolymerase	phaZ	-	3.1.1.75	ko:K05973	ko00650,map00650	-	R05118	-	ko00000,ko00001,ko01000	-	-	-	PHB_depo_C
DYD3_k127_5020443_21	1121949.AQXT01000002_gene2197	1.927e-32	144.0	2DQ9Z@1|root,335J3@2|Bacteria,1R3J8@1224|Proteobacteria,2U03M@28211|Alphaproteobacteria,43XS9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5020443_12	1123059.KB823011_gene1975	4.413e-52	194.0	COG1451@1|root,COG1451@2|Bacteria,1MXZU@1224|Proteobacteria,2U1JG@28211|Alphaproteobacteria,43XRI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function DUF45	MA20_23375	-	-	ko:K07043	-	-	-	-	ko00000	-	-	-	DUF45
DYD3_k127_5020443_1	394221.Mmar10_2868	1.523e-173	567.0	COG0744@1|root,COG0744@2|Bacteria,1QTST@1224|Proteobacteria,2TQQ8@28211|Alphaproteobacteria,43WYT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Transglycosylase	-	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly,Transpeptidase
DYD3_k127_5020443_23	1116369.KB890024_gene4299	2.506e-27	112.0	COG3655@1|root,COG3655@2|Bacteria,1N6VH@1224|Proteobacteria,2UFAM@28211|Alphaproteobacteria,43Q7Q@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Cro/C1-type HTH DNA-binding domain	-	-	-	ko:K07727	-	-	-	-	ko00000,ko03000	-	-	-	HTH_26
DYD3_k127_5071406_4	391037.Sare_1035	3.153e-20	93.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_5071406_5	555793.WSK_2874	4.227e-20	97.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria,2KBI7@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5071406_0	1161401.ASJA01000012_gene820	3.27e-86	295.0	COG4798@1|root,COG4798@2|Bacteria,1NNHX@1224|Proteobacteria,2U5HN@28211|Alphaproteobacteria,43X66@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5071406_2	1127673.GLIP_0459	1.583e-47	184.0	COG3386@1|root,COG3386@2|Bacteria,1QAGP@1224|Proteobacteria,1RTQI@1236|Gammaproteobacteria,46BKS@72275|Alteromonadaceae	1236|Gammaproteobacteria	G	PFAM SMP-30 Gluconolaconase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5071406_1	349521.HCH_01549	6.424e-58	214.0	COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,1T8Z2@1236|Gammaproteobacteria,1XQMP@135619|Oceanospirillales	135619|Oceanospirillales	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	ko:K07098	-	-	-	-	ko00000	-	-	-	Metallophos
DYD3_k127_5071406_3	211114.JOEF01000025_gene185	2.158e-22	100.0	COG0491@1|root,COG0491@2|Bacteria,2IBAX@201174|Actinobacteria	201174|Actinobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_509023_1	709797.CSIRO_0303	4.652e-29	119.0	COG0640@1|root,COG0640@2|Bacteria,1N10H@1224|Proteobacteria,2UBRH@28211|Alphaproteobacteria,3JY4Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_509023_2	380703.AHA_4248	8.499e-07	57.0	COG0810@1|root,COG0810@2|Bacteria,1R4VE@1224|Proteobacteria,1RQPV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	U	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	tonB2	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_509023_0	1120792.JAFV01000001_gene2090	7.152e-71	248.0	COG0514@1|root,COG0514@2|Bacteria,1MVGG@1224|Proteobacteria,2TS8B@28211|Alphaproteobacteria,36XUX@31993|Methylocystaceae	28211|Alphaproteobacteria	L	RQC	recQ	-	3.6.4.12	ko:K03654	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind
DYD3_k127_509582_3	366602.Caul_1696	3.191e-179	568.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,2KG3B@204458|Caulobacterales	204458|Caulobacterales	I	Belongs to the thiolase family	-	-	2.3.1.174,2.3.1.9	ko:K00626,ko:K07823	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R00829,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_509582_9	314254.OA2633_03321	4.44e-30	130.0	2C996@1|root,2ZPTR@2|Bacteria,1P8FW@1224|Proteobacteria,2UYVC@28211|Alphaproteobacteria,440H0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_509582_5	1121033.AUCF01000011_gene1768	6.688e-141	457.0	COG0579@1|root,COG0579@2|Bacteria,1N0QB@1224|Proteobacteria,2TU6K@28211|Alphaproteobacteria,2JQVK@204441|Rhodospirillales	204441|Rhodospirillales	S	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_509582_18	1123503.KB908058_gene893	4.376e-06	55.0	COG0810@1|root,COG0810@2|Bacteria,1PEDH@1224|Proteobacteria,2UEEK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_509582_7	1280946.HY29_08935	3.277e-132	430.0	COG0190@1|root,COG0190@2|Bacteria,1MWU4@1224|Proteobacteria,2TRZZ@28211|Alphaproteobacteria,43WME@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	folD	-	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000	-	-	-	THF_DHG_CYH,THF_DHG_CYH_C
DYD3_k127_509582_14	1161401.ASJA01000017_gene1310	9.377e-19	89.0	COG1872@1|root,COG1872@2|Bacteria,1N6V2@1224|Proteobacteria,2UF67@28211|Alphaproteobacteria,43YGF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0235 family	MA20_25230	-	-	ko:K09131	-	-	-	-	ko00000	-	-	-	DUF167
DYD3_k127_509582_11	1123366.TH3_04584	1.575e-22	101.0	COG0762@1|root,COG0762@2|Bacteria,1N73Q@1224|Proteobacteria,2UFZR@28211|Alphaproteobacteria,2JU21@204441|Rhodospirillales	204441|Rhodospirillales	S	YGGT family	-	-	-	ko:K02221	-	-	-	-	ko00000,ko02044	-	-	-	YGGT
DYD3_k127_509582_4	1161401.ASJA01000010_gene1445	1.506e-147	492.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria,43X59@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Recombinase	-	-	-	ko:K06400	-	-	-	-	ko00000	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_509582_10	1123501.KB902288_gene1875	1.019e-27	119.0	2E7ZA@1|root,332DQ@2|Bacteria,1N8W6@1224|Proteobacteria,2UH44@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2924)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2924
DYD3_k127_509582_13	1304878.AUGD01000016_gene1364	2.603e-19	101.0	2F6Z1@1|root,33ZF0@2|Bacteria,1N79P@1224|Proteobacteria,2UGSR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_509582_17	314260.PB2503_07519	3.493e-06	59.0	2FA7S@1|root,342GF@2|Bacteria,1NZKE@1224|Proteobacteria,2UTX5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_509582_1	1336235.JAEG01000020_gene3483	7.422e-204	666.0	COG3710@1|root,COG3903@1|root,COG3710@2|Bacteria,COG3903@2|Bacteria,1MWPD@1224|Proteobacteria,2TQQR@28211|Alphaproteobacteria,4BAW7@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulatory protein, C terminal	-	-	-	-	-	-	-	-	-	-	-	-	AAA_22,NB-ARC,Trans_reg_C
DYD3_k127_509582_2	717785.HYPMC_1564	5.052e-181	581.0	COG1012@1|root,COG1012@2|Bacteria,1MVGW@1224|Proteobacteria,2TR9T@28211|Alphaproteobacteria,3N86X@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	Belongs to the aldehyde dehydrogenase family	calB	-	1.2.1.68,1.2.99.10	ko:K00154,ko:K22445	-	-	-	-	ko00000,ko01000	-	-	-	Aldedh
DYD3_k127_509582_0	1120919.AUBI01000027_gene3516	8.651e-211	663.0	COG3670@1|root,COG3670@2|Bacteria,1MY1X@1224|Proteobacteria,2TS7A@28211|Alphaproteobacteria,2JWFT@204441|Rhodospirillales	204441|Rhodospirillales	Q	Retinal pigment epithelial membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	RPE65
DYD3_k127_509582_6	1041139.KB902680_gene1512	9.606e-139	452.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,4B8Q9@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_509582_12	663610.JQKO01000008_gene87	3.285e-20	96.0	28JUV@1|root,2Z9JV@2|Bacteria,1R9BS@1224|Proteobacteria,2TQV7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_509582_8	504472.Slin_2095	7.892e-47	173.0	COG3631@1|root,COG3631@2|Bacteria	2|Bacteria	S	light absorption	-	-	-	-	-	-	-	-	-	-	-	-	EthD,Glyoxalase,SnoaL_2
DYD3_k127_5103875_2	366602.Caul_4023	1.139e-69	253.0	COG2353@1|root,COG2353@2|Bacteria,1RDEA@1224|Proteobacteria,2U7QJ@28211|Alphaproteobacteria,2KHSP@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the UPF0312 family	-	-	-	-	-	-	-	-	-	-	-	-	YceI
DYD3_k127_5103875_9	1123503.KB908056_gene1971	7.349e-25	106.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,2KH7U@204458|Caulobacterales	204458|Caulobacterales	K	Cold shock protein domain	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_5103875_10	745310.G432_11390	6.944e-14	83.0	COG1190@1|root,COG1190@2|Bacteria,1R18S@1224|Proteobacteria,2TYYI@28211|Alphaproteobacteria,2KE6D@204457|Sphingomonadales	204457|Sphingomonadales	J	KTSC domain	-	-	-	-	-	-	-	-	-	-	-	-	KTSC
DYD3_k127_5103875_4	983920.Y88_3717	3.021e-54	197.0	COG3631@1|root,COG3631@2|Bacteria,1RH08@1224|Proteobacteria,2U96H@28211|Alphaproteobacteria,2KA98@204457|Sphingomonadales	204457|Sphingomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_5103875_0	1211115.ALIQ01000018_gene2164	1.721e-104	353.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2TR47@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	glucose sorbosone	yliI	GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016901,GO:0019842,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046872,GO:0048037,GO:0048038,GO:0055114,GO:0070968,GO:0097159,GO:1901363	1.1.5.2	ko:K00117,ko:K21430	ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130	-	R06620	RC00066	ko00000,ko00001,ko01000	-	-	-	GSDH
DYD3_k127_5103875_1	247634.GPB2148_3077	3.558e-90	304.0	COG1028@1|root,COG1028@2|Bacteria,1MWJI@1224|Proteobacteria,1RY5G@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	reductase	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_5103875_8	1040987.AZUY01000010_gene4315	1.314e-27	115.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,43KPT@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Cold-shock	MA20_05565	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_5103875_6	861299.J421_0984	9.982e-30	124.0	COG2315@1|root,COG2315@2|Bacteria	2|Bacteria	V	Protein conserved in bacteria	difB	-	-	-	-	-	-	-	-	-	-	-	YjbR
DYD3_k127_5103875_5	394221.Mmar10_0643	1.238e-41	161.0	COG3339@1|root,COG3339@2|Bacteria,1RAN7@1224|Proteobacteria	1224|Proteobacteria	S	Conserved Protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1232
DYD3_k127_5103875_3	633131.TR2A62_2809	1.231e-56	203.0	COG1225@1|root,COG1225@2|Bacteria,1R9YF@1224|Proteobacteria,2U5T9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Alkyl hydroperoxide reductase	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA
DYD3_k127_5103875_7	935261.JAGL01000022_gene182	1.594e-28	115.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,43KQG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Cold shock	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_5103875_11	863239.AFIZ01000036_gene2163	6.001e-07	55.0	COG2261@1|root,COG2261@2|Bacteria,2GSMN@201174|Actinobacteria,22NVA@1653|Corynebacteriaceae	201174|Actinobacteria	S	membrane	-	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
DYD3_k127_5114727_4	1161401.ASJA01000004_gene2185	6.633e-119	389.0	COG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,2TUQQ@28211|Alphaproteobacteria,43ZBM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	flaA	GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464	-	ko:K02406	ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
DYD3_k127_5114727_17	314254.OA2633_04946	1.566e-09	64.0	COG1334@1|root,COG1334@2|Bacteria,1PAA0@1224|Proteobacteria,2UYWC@28211|Alphaproteobacteria,43YTS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	FlaG protein	-	-	-	ko:K06603	-	-	-	-	ko00000,ko02035	-	-	-	FlaG
DYD3_k127_5114727_5	1161401.ASJA01000004_gene2187	4.104e-96	322.0	COG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,2TUQQ@28211|Alphaproteobacteria,43XBV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	flaA	GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464	-	ko:K02406	ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
DYD3_k127_5114727_6	1479238.JQMZ01000001_gene2222	1.305e-92	313.0	COG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,2TUQQ@28211|Alphaproteobacteria,43XBV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	flaA	GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464	-	ko:K02406	ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
DYD3_k127_5114727_11	1123503.KB908056_gene1322	1.502e-37	145.0	COG5442@1|root,COG5442@2|Bacteria,1N1GT@1224|Proteobacteria,2UCTU@28211|Alphaproteobacteria,2KGYA@204458|Caulobacterales	204458|Caulobacterales	N	PFAM flagellar FlaF family protein	-	-	-	ko:K06602	-	-	-	-	ko00000,ko02035	-	-	-	FlaF
DYD3_k127_5114727_9	1479238.JQMZ01000001_gene2224	4.946e-59	209.0	COG5443@1|root,COG5443@2|Bacteria,1RD3V@1224|Proteobacteria,2U7PK@28211|Alphaproteobacteria,43XX7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellar protein FlbT	flbT	-	-	ko:K06601	-	-	-	-	ko00000,ko02035	-	-	-	FlbT
DYD3_k127_5114727_3	1161401.ASJA01000004_gene2191	4.847e-180	582.0	COG0457@1|root,COG0457@2|Bacteria,1MUZK@1224|Proteobacteria,2TS0U@28211|Alphaproteobacteria,43WTE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_11,TPR_16,TPR_19,TPR_2,TPR_8
DYD3_k127_5114727_10	1280946.HY29_07525	4.989e-49	182.0	COG1357@1|root,COG1357@2|Bacteria,1R7DQ@1224|Proteobacteria,2TZCU@28211|Alphaproteobacteria,4405F@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	low-complexity proteins	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5114727_0	420324.KI911999_gene8064	4.621e-281	880.0	28JZZ@1|root,2Z9PZ@2|Bacteria,1N3C6@1224|Proteobacteria,2TSCX@28211|Alphaproteobacteria,1JTZB@119045|Methylobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5114727_13	740709.A10D4_01080	3.607e-19	101.0	2DM50@1|root,31R6R@2|Bacteria,1N0T3@1224|Proteobacteria,1T0NA@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5114727_16	690585.JNNU01000011_gene2848	3.09e-11	68.0	COG1669@1|root,COG1669@2|Bacteria,1N8UR@1224|Proteobacteria,2UFTP@28211|Alphaproteobacteria,4BG8B@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Nucleotidyltransferase domain	-	-	-	ko:K07075	-	-	-	-	ko00000	-	-	-	NTP_transf_2
DYD3_k127_5114727_18	479437.Elen_2871	0.0004414	48.0	COG2361@1|root,COG2361@2|Bacteria,2GQBW@201174|Actinobacteria,4CY34@84998|Coriobacteriia	84998|Coriobacteriia	S	Protein of unknown function DUF86	-	-	-	-	-	-	-	-	-	-	-	-	DUF86
DYD3_k127_5114727_1	1161401.ASJA01000012_gene789	5.774e-253	791.0	COG1384@1|root,COG1384@2|Bacteria,1MV32@1224|Proteobacteria,2TQYH@28211|Alphaproteobacteria,43WXV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	lysS	-	6.1.1.6	ko:K04566	ko00970,map00970	M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1f
DYD3_k127_5114727_2	1123059.KB823014_gene284	9.032e-202	660.0	COG0308@1|root,COG0308@2|Bacteria,1MUCI@1224|Proteobacteria,2U39Z@28211|Alphaproteobacteria,440PS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	ERAP1-like C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	ERAP1_C,Peptidase_M1
DYD3_k127_5114727_14	1211115.ALIQ01000018_gene2161	7.874e-18	86.0	COG4095@1|root,COG4095@2|Bacteria,1N759@1224|Proteobacteria,2UG31@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PQ loop repeat	-	-	-	ko:K15383	-	-	-	-	ko00000,ko02000	9.A.58.2	-	-	PQ-loop
DYD3_k127_5114727_15	582402.Hbal_2922	9.722e-17	95.0	COG0457@1|root,COG0457@2|Bacteria,1N7YB@1224|Proteobacteria,2UHSY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	TIR domain	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_5114727_12	745411.B3C1_01460	2.109e-31	143.0	COG3409@1|root,COG3409@2|Bacteria	2|Bacteria	M	Peptidoglycan-binding domain 1 protein	-	-	-	-	-	-	-	-	-	-	-	-	Muraidase,PG_binding_1
DYD3_k127_5114727_8	1280954.HPO_14751	4.958e-84	287.0	COG1446@1|root,COG1446@2|Bacteria,1RBN2@1224|Proteobacteria,2U6II@28211|Alphaproteobacteria,43WH0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	asparaginase	-	-	3.4.19.5	ko:K13051	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Asparaginase_2
DYD3_k127_5114727_7	1217720.ALOX01000027_gene3732	2.814e-91	306.0	COG3384@1|root,COG3384@2|Bacteria,1MXJZ@1224|Proteobacteria,2TRJT@28211|Alphaproteobacteria,2JS2M@204441|Rhodospirillales	204441|Rhodospirillales	S	Catalytic LigB subunit of aromatic ring-opening dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	LigB
DYD3_k127_5128516_10	596152.DesU5LDRAFT_2641	4.215e-25	110.0	29XVI@1|root,30JMT@2|Bacteria,1R14U@1224|Proteobacteria,43D69@68525|delta/epsilon subdivisions,2X8D0@28221|Deltaproteobacteria,2MA0G@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	Cytochrome b	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
DYD3_k127_5128516_11	644968.DFW101_0020	4.177e-16	84.0	2AHM7@1|root,317Z3@2|Bacteria,1PZHH@1224|Proteobacteria,435Z7@68525|delta/epsilon subdivisions,2X0GI@28221|Deltaproteobacteria,2MC94@213115|Desulfovibrionales	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5128516_6	935840.JAEQ01000016_gene2216	5.824e-69	248.0	COG2358@1|root,COG2358@2|Bacteria,1R8QD@1224|Proteobacteria,2U7M9@28211|Alphaproteobacteria,43KXK@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	NMT1-like family	-	-	-	ko:K07080	-	-	-	-	ko00000	-	-	-	NMT1_3
DYD3_k127_5128516_0	1381123.AYOD01000013_gene2195	4.29e-201	649.0	COG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,2TQY9@28211|Alphaproteobacteria,43I4Z@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Tripartite ATP-independent periplasmic transporter, DctM component	-	-	-	-	-	-	-	-	-	-	-	-	DctM
DYD3_k127_5128516_4	1161401.ASJA01000015_gene1002	1.748e-105	359.0	COG0477@1|root,COG0477@2|Bacteria,1RGPN@1224|Proteobacteria,2TQKW@28211|Alphaproteobacteria,440VD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_5128516_7	627192.SLG_25120	7.505e-49	187.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5128516_2	1385511.N783_00010	3.583e-191	619.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1V091@1239|Firmicutes,4HCPE@91061|Bacilli	91061|Bacilli	CG	PQQ enzyme repeat	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_5128516_1	1385511.N783_00010	2.288e-197	652.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1V091@1239|Firmicutes,4HCPE@91061|Bacilli	91061|Bacilli	CG	PQQ enzyme repeat	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_5128516_3	627192.SLG_12710	7.472e-116	382.0	COG0604@1|root,COG0604@2|Bacteria,1MXUX@1224|Proteobacteria,2TTWF@28211|Alphaproteobacteria,2K2II@204457|Sphingomonadales	204457|Sphingomonadales	C	COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_5128516_9	382464.ABSI01000010_gene3793	5.997e-34	139.0	COG3507@1|root,COG3507@2|Bacteria	2|Bacteria	G	Belongs to the glycosyl hydrolase 43 family	-	-	-	-	-	-	-	-	-	-	-	-	DUF1080
DYD3_k127_5128516_5	220664.PFL_1748	1.389e-92	310.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,1RMF7@1236|Gammaproteobacteria,1YRWI@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	O	Glutathione S-transferase, C-terminal domain	yfcG	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_N
DYD3_k127_5128516_8	702113.PP1Y_AT11547	9.615e-40	153.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_5142627_1	1110502.TMO_2910	7.033e-63	230.0	COG3528@1|root,COG3528@2|Bacteria,1R601@1224|Proteobacteria,2U1IH@28211|Alphaproteobacteria,2JPW1@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF2219
DYD3_k127_5142627_7	1415779.JOMH01000001_gene2264	2.801e-34	150.0	COG1262@1|root,COG4249@1|root,COG1262@2|Bacteria,COG4249@2|Bacteria,1NQ5K@1224|Proteobacteria,1RQVK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	D	PFAM Sulphatase-modifying factor	-	-	-	ko:K20333	ko02024,map02024	-	-	-	ko00000,ko00001	-	-	-	FGE-sulfatase
DYD3_k127_5142627_2	1123503.KB908057_gene2511	1.443e-50	200.0	COG3591@1|root,COG3591@2|Bacteria,1NQI1@1224|Proteobacteria,2U5SD@28211|Alphaproteobacteria,2KIHQ@204458|Caulobacterales	204458|Caulobacterales	E	Belongs to the peptidase S1B family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5142627_3	648757.Rvan_1260	4.632e-45	181.0	COG5640@1|root,COG5640@2|Bacteria,1NFNT@1224|Proteobacteria,2U9RV@28211|Alphaproteobacteria,3N8PY@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	O	Trypsin-like serine protease	-	-	-	-	-	-	-	-	-	-	-	-	DUF4384,Trypsin
DYD3_k127_5142627_0	1161401.ASJA01000026_gene6	4.358e-188	592.0	COG0208@1|root,COG0208@2|Bacteria,1MWUS@1224|Proteobacteria,2TS3X@28211|Alphaproteobacteria,43WU8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	nrdF	-	1.17.4.1	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_sm
DYD3_k127_5142627_6	1280946.HY29_04585	2.077e-35	142.0	COG2852@1|root,COG2852@2|Bacteria,1N2R3@1224|Proteobacteria,2UDGV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
DYD3_k127_5142627_9	1219065.VPR01S_06_00720	0.0002695	49.0	2EVF3@1|root,33NVI@2|Bacteria,1NPYI@1224|Proteobacteria,1SV5C@1236|Gammaproteobacteria,1XW0P@135623|Vibrionales	135623|Vibrionales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SH3_3
DYD3_k127_5142627_4	1123320.KB889719_gene7316	9.58e-44	173.0	COG3509@1|root,COG3509@2|Bacteria	2|Bacteria	Q	xylan catabolic process	lpqP	-	-	ko:K03932	-	-	-	-	ko00000	-	CE1	-	Esterase_phd
DYD3_k127_5142627_8	234267.Acid_4769	2.059e-30	123.0	29WUP@1|root,30IG4@2|Bacteria,3Y82K@57723|Acidobacteria	57723|Acidobacteria	S	ASCH	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5144108_0	1123269.NX02_20205	2.397e-207	658.0	COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1MWGR@1224|Proteobacteria,2UQQV@28211|Alphaproteobacteria,2K9GV@204457|Sphingomonadales	204457|Sphingomonadales	EU	Dienelactone hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	PD40,Peptidase_S9
DYD3_k127_5144108_1	69395.JQLZ01000003_gene448	3.864e-161	519.0	COG1228@1|root,COG1228@2|Bacteria,1MVAF@1224|Proteobacteria,2U0BD@28211|Alphaproteobacteria,2KK0G@204458|Caulobacterales	204458|Caulobacterales	Q	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1
DYD3_k127_5144108_3	1280950.HJO_02280	1.531e-149	488.0	COG0624@1|root,COG0624@2|Bacteria,1MWJS@1224|Proteobacteria,2TUHT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases	-	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
DYD3_k127_5144108_2	69395.JQLZ01000003_gene449	7.308e-161	517.0	COG0531@1|root,COG0531@2|Bacteria,1MUA2@1224|Proteobacteria,2TRWS@28211|Alphaproteobacteria,2KGRN@204458|Caulobacterales	204458|Caulobacterales	E	amino acid	-	-	-	ko:K03294,ko:K03759	-	-	-	-	ko00000,ko02000	2.A.3.2	-	-	AA_permease_2
DYD3_k127_5158455_0	1161401.ASJA01000010_gene1456	1.318e-91	318.0	COG2861@1|root,COG2861@2|Bacteria,1N3JP@1224|Proteobacteria,2TUFD@28211|Alphaproteobacteria,43XIF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Divergent polysaccharide deacetylase	-	-	-	ko:K09798	-	-	-	-	ko00000	-	-	-	Polysacc_deac_2
DYD3_k127_5158455_1	1161401.ASJA01000010_gene1457	2.378e-53	197.0	COG1051@1|root,COG1051@2|Bacteria,1QU0T@1224|Proteobacteria,2TW25@28211|Alphaproteobacteria,440UG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	NUDIX domain	nudH	-	-	ko:K08311	ko03018,map03018	-	R10816	RC00002	ko00000,ko00001,ko01000,ko03019	-	-	-	NUDIX
DYD3_k127_5158455_3	1123503.KB908056_gene1862	1.112e-36	152.0	COG0355@1|root,COG0355@2|Bacteria,1RHE4@1224|Proteobacteria,2UBXX@28211|Alphaproteobacteria,2KGZN@204458|Caulobacterales	204458|Caulobacterales	C	Produces ATP from ADP in the presence of a proton gradient across the membrane	atpC	-	-	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_DE_N
DYD3_k127_5158455_6	1502851.FG93_03349	4.076e-13	77.0	COG3428@1|root,COG3428@2|Bacteria,1N9PB@1224|Proteobacteria,2TUD0@28211|Alphaproteobacteria,3JW2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial PH domain	-	-	-	-	-	-	-	-	-	-	-	-	bPH_2
DYD3_k127_5158455_2	228405.HNE_2677	5.138e-46	182.0	COG3137@1|root,COG3137@2|Bacteria,1PWI3@1224|Proteobacteria,2U1GY@28211|Alphaproteobacteria,43XJ9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Protein of unknown function, DUF481	-	-	-	-	-	-	-	-	-	-	-	-	DUF481
DYD3_k127_5158455_4	627192.SLG_24900	1.23e-28	120.0	COG0346@1|root,COG0346@2|Bacteria,1N4DA@1224|Proteobacteria,2UEPZ@28211|Alphaproteobacteria,2K534@204457|Sphingomonadales	204457|Sphingomonadales	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_5158455_5	349521.HCH_01549	8.563e-21	94.0	COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,1T8Z2@1236|Gammaproteobacteria,1XQMP@135619|Oceanospirillales	135619|Oceanospirillales	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	ko:K07098	-	-	-	-	ko00000	-	-	-	Metallophos
DYD3_k127_5176361_6	1134474.O59_002799	2.957e-27	117.0	2E3CB@1|root,32YBM@2|Bacteria,1N6WD@1224|Proteobacteria,1SDBT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Domain of unknown function (DUF4154)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4154
DYD3_k127_5176361_4	492774.JQMB01000005_gene5543	1.311e-76	286.0	COG1807@1|root,COG3829@1|root,COG4251@1|root,COG1807@2|Bacteria,COG3829@2|Bacteria,COG4251@2|Bacteria,1NSQ1@1224|Proteobacteria,2UR9Y@28211|Alphaproteobacteria,4BNTR@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_9
DYD3_k127_5176361_0	69395.JQLZ01000002_gene1194	4.129e-122	401.0	COG0717@1|root,COG0717@2|Bacteria,1MVDH@1224|Proteobacteria,2TR5U@28211|Alphaproteobacteria,2KFP3@204458|Caulobacterales	204458|Caulobacterales	F	2-deoxycytidine 5-triphosphate deaminase	-	-	3.5.4.13	ko:K01494	ko00240,ko01100,map00240,map01100	M00053	R00568,R02325	RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	DCD
DYD3_k127_5176361_5	314254.OA2633_06659	1.02e-46	172.0	COG2967@1|root,COG2967@2|Bacteria,1MZ2Z@1224|Proteobacteria,2U9JM@28211|Alphaproteobacteria,43Y6U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	protein affecting Mg2 Co2 transport	apaG	-	-	ko:K06195	-	-	-	-	ko00000	-	-	-	DUF525
DYD3_k127_5176361_1	1280947.HY30_00065	4.698e-103	342.0	COG1305@1|root,COG1305@2|Bacteria,1MWAI@1224|Proteobacteria,2TURT@28211|Alphaproteobacteria,43W5I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Transglut_core
DYD3_k127_5176361_3	1336243.JAEA01000013_gene3237	3.914e-81	277.0	COG0664@1|root,COG0664@2|Bacteria,1NEQM@1224|Proteobacteria,2TQXG@28211|Alphaproteobacteria,1JZBT@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	Cyclic nucleotide-monophosphate binding domain	MA20_25280	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2
DYD3_k127_5176361_2	161528.ED21_23711	1.117e-97	333.0	COG2203@1|root,COG3920@1|root,COG2203@2|Bacteria,COG3920@2|Bacteria,1RGKE@1224|Proteobacteria,2TWDZ@28211|Alphaproteobacteria,2KEG4@204457|Sphingomonadales	204457|Sphingomonadales	T	HWE histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HWE_HK
DYD3_k127_5176361_7	1035191.HMPREF0185_02914	3.876e-08	55.0	COG1281@1|root,COG1281@2|Bacteria,1MUMU@1224|Proteobacteria,2TTUR@28211|Alphaproteobacteria,2KFP8@204458|Caulobacterales	204458|Caulobacterales	O	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress	-	-	-	ko:K04083	-	-	-	-	ko00000,ko03110	-	-	-	HSP33
DYD3_k127_5209214_4	1121948.AUAC01000004_gene191	9.203e-32	142.0	COG0287@1|root,COG0287@2|Bacteria,1QTZA@1224|Proteobacteria,2TS12@28211|Alphaproteobacteria,43X88@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Dehydrogenase	tyrC	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0047794,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.3.1.12,1.3.1.43	ko:K00210,ko:K00220,ko:K04517	ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230	M00025,M00040	R00732,R01728	RC00125	ko00000,ko00001,ko00002,ko01000	-	-	-	PDH
DYD3_k127_5209214_0	1122929.KB908224_gene3478	3.122e-121	401.0	COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,2TQPN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily	hisC	-	2.6.1.9	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	M00026	R00694,R00734,R03243	RC00006,RC00888	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_5209214_2	1161401.ASJA01000006_gene2000	8.388e-77	265.0	COG0500@1|root,COG2226@2|Bacteria,1NA7K@1224|Proteobacteria,2TT7T@28211|Alphaproteobacteria,43XPH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	COG0500 SAM-dependent methyltransferases	MA20_39625	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_5209214_1	402881.Plav_1578	2.376e-97	338.0	COG0491@1|root,COG0491@2|Bacteria,1MU8Q@1224|Proteobacteria,2TSVS@28211|Alphaproteobacteria,1JNV9@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid	gloB	-	3.1.2.6	ko:K01069	ko00620,map00620	-	R01736	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	HAGH_C,Lactamase_B
DYD3_k127_5209214_3	426117.M446_2062	4.667e-50	183.0	COG3542@1|root,COG3542@2|Bacteria,1RHBE@1224|Proteobacteria,2U962@28211|Alphaproteobacteria,1JS5Z@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Cupin superfamily (DUF985)	MA20_39615	-	-	ko:K09705	-	-	-	-	ko00000	-	-	-	Cupin_5
DYD3_k127_5209214_6	391600.ABRU01000054_gene616	5.426e-19	96.0	2ARAD@1|root,31GKB@2|Bacteria,1RJG7@1224|Proteobacteria,2UBC4@28211|Alphaproteobacteria,2KGQ5@204458|Caulobacterales	204458|Caulobacterales	S	Domain of unknown function (DUF4908)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4908
DYD3_k127_5209214_5	392499.Swit_4599	2.038e-20	90.0	COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,2TRCF@28211|Alphaproteobacteria,2K0A2@204457|Sphingomonadales	204457|Sphingomonadales	IQ	Acetoacetyl-CoA reductase	phbB	-	1.1.1.36	ko:K00023	ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200	M00373	R01779,R01977	RC00103,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
DYD3_k127_52140_16	1267535.KB906767_gene1622	4.776e-22	100.0	COG0346@1|root,COG0346@2|Bacteria	2|Bacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_52140_5	1380391.JIAS01000011_gene4670	7.821e-99	327.0	COG3791@1|root,COG3791@2|Bacteria,1MX4A@1224|Proteobacteria,2TSAN@28211|Alphaproteobacteria,2JV7J@204441|Rhodospirillales	204441|Rhodospirillales	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	4.4.1.22	ko:K03396	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R06982	RC00069,RC01707	ko00000,ko00001,ko01000	-	-	-	GFA
DYD3_k127_52140_15	450851.PHZ_c3175	1.649e-32	131.0	COG0346@1|root,COG0346@2|Bacteria,1RH79@1224|Proteobacteria,2UAPG@28211|Alphaproteobacteria,2KH4B@204458|Caulobacterales	204458|Caulobacterales	E	Glyoxalase bleomycin resistance protein dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_52140_19	394221.Mmar10_0805	5.319e-12	68.0	COG4691@1|root,COG4691@2|Bacteria,1P84J@1224|Proteobacteria,2UYR3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Plasmid stability protein	-	-	-	ko:K21495	-	-	-	-	ko00000,ko02048	-	-	-	-
DYD3_k127_52140_17	258594.RPA3449	1.998e-16	85.0	COG4113@1|root,COG4113@2|Bacteria,1N7ET@1224|Proteobacteria,2UG7M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	-	-	-	ko:K07065	-	-	-	-	ko00000	-	-	-	PIN
DYD3_k127_52140_2	1335760.ASTG01000003_gene1767	9.213e-135	437.0	COG0627@1|root,COG0627@2|Bacteria,1MUID@1224|Proteobacteria,2TQSM@28211|Alphaproteobacteria,2K143@204457|Sphingomonadales	204457|Sphingomonadales	S	Serine hydrolase involved in the detoxification of formaldehyde	-	-	3.1.2.12	ko:K01070	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R00527	RC00167,RC00320	ko00000,ko00001,ko01000	-	CE1	-	Esterase
DYD3_k127_52140_6	1161401.ASJA01000017_gene1262	4.096e-98	329.0	COG2857@1|root,COG2857@2|Bacteria,1QFU2@1224|Proteobacteria,2TUHX@28211|Alphaproteobacteria,43WC5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	cytochrome c1	petC	-	-	ko:K00413	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002	-	-	-	Cytochrom_C1
DYD3_k127_52140_1	314254.OA2633_06279	1.074e-207	652.0	COG1290@1|root,COG1290@2|Bacteria,1MV97@1224|Proteobacteria,2TSZ3@28211|Alphaproteobacteria,43W4J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis	petB	-	-	ko:K00410,ko:K00412	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002,ko03029	-	-	-	Cytochrom_B_C,Cytochrom_C1,Cytochrome_B
DYD3_k127_52140_8	1161401.ASJA01000017_gene1264	9.697e-76	258.0	COG0723@1|root,COG0723@2|Bacteria,1RAA2@1224|Proteobacteria,2TTT2@28211|Alphaproteobacteria,43XD0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis	petA	-	1.10.2.2	ko:K00411	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,UCR_Fe-S_N
DYD3_k127_52140_10	394221.Mmar10_0735	1.162e-50	184.0	COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,2U78W@28211|Alphaproteobacteria,43XVM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide	trmL	-	2.1.1.207	ko:K03216	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	SpoU_methylase
DYD3_k127_52140_3	402881.Plav_2240	2.459e-132	430.0	COG0408@1|root,COG0408@2|Bacteria,1MWMF@1224|Proteobacteria,2TQNC@28211|Alphaproteobacteria,1JNJF@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX	hemF	GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983	1.3.3.3	ko:K00228	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03220	RC00884	ko00000,ko00001,ko00002,ko01000	-	-	-	Coprogen_oxidas
DYD3_k127_52140_14	1198452.Jab_2c12080	4.429e-33	141.0	2E083@1|root,32VVX@2|Bacteria,1N26N@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_52140_20	1245469.S58_62320	5.163e-07	55.0	28X4H@1|root,2ZJ30@2|Bacteria,1NI8P@1224|Proteobacteria,2UNCN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_52140_12	395963.Bind_1887	6.296e-36	138.0	COG0640@1|root,COG0640@2|Bacteria,1N272@1224|Proteobacteria,2UE0A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_52140_7	450851.PHZ_c3158	2.437e-84	288.0	COG0647@1|root,COG0647@2|Bacteria,1MU9Y@1224|Proteobacteria,2TUH0@28211|Alphaproteobacteria,2KF3K@204458|Caulobacterales	204458|Caulobacterales	G	Hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_6,Hydrolase_like
DYD3_k127_52140_4	1161401.ASJA01000003_gene3003	2.522e-103	350.0	COG2200@1|root,COG2200@2|Bacteria,1MU4F@1224|Proteobacteria,2TU9M@28211|Alphaproteobacteria,43X6C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	EAL domain	MA20_05620	-	-	ko:K13593	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	EAL
DYD3_k127_52140_13	1280952.HJA_17305	2.665e-35	151.0	COG1432@1|root,COG1432@2|Bacteria,1Q0F0@1224|Proteobacteria	1224|Proteobacteria	M	NYN domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN
DYD3_k127_52140_9	1161401.ASJA01000008_gene1602	8.675e-59	215.0	COG2885@1|root,COG2885@2|Bacteria,1MYBP@1224|Proteobacteria,2U787@28211|Alphaproteobacteria,43XTH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	yiaD	-	-	-	-	-	-	-	-	-	-	-	Gly-zipper_Omp,Gly-zipper_YMGG,OmpA
DYD3_k127_52140_11	1380391.JIAS01000001_gene2806	2.821e-48	179.0	COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,2U9AQ@28211|Alphaproteobacteria,2JSPE@204441|Rhodospirillales	204441|Rhodospirillales	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	groS	-	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
DYD3_k127_52140_0	1280953.HOC_14173	1.732e-272	846.0	COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,2TS07@28211|Alphaproteobacteria,43WG3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD3_k127_5214590_4	766499.C357_16416	1.225e-21	94.0	COG3293@1|root,COG3293@2|Bacteria,1RM2E@1224|Proteobacteria,2U8WG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Putative transposase of IS4/5 family (DUF4096)	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DUF4096
DYD3_k127_5214590_1	1161401.ASJA01000005_gene2476	3.56e-95	331.0	COG2271@1|root,COG2271@2|Bacteria,1MWYR@1224|Proteobacteria,2TSXW@28211|Alphaproteobacteria,43XF8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_5214590_2	114615.BRADO5212	2.31e-75	265.0	COG1878@1|root,COG1878@2|Bacteria,1MVWU@1224|Proteobacteria,2TUQ1@28211|Alphaproteobacteria,3JRVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative cyclase	-	-	-	-	-	-	-	-	-	-	-	-	Cyclase
DYD3_k127_5214590_0	1122604.JONR01000001_gene2030	2.994e-145	473.0	COG2010@1|root,COG2010@2|Bacteria,1MV6D@1224|Proteobacteria,1RMYF@1236|Gammaproteobacteria,1X5CI@135614|Xanthomonadales	135614|Xanthomonadales	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
DYD3_k127_5214590_3	375451.RD1_0402	2.934e-48	187.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2TUXV@28211|Alphaproteobacteria,2P0Z2@2433|Roseobacter	28211|Alphaproteobacteria	S	ErfK YbiS YcfS YnhG family protein	-	-	-	ko:K16291	-	-	-	-	ko00000,ko01002,ko01011	-	-	-	YkuD
DYD3_k127_5222598_1	450851.PHZ_c2333	1.612e-76	264.0	COG3023@1|root,COG3023@2|Bacteria,1RDHU@1224|Proteobacteria,2TSW3@28211|Alphaproteobacteria,2KEZK@204458|Caulobacterales	204458|Caulobacterales	V	N-acetylmuramoyl-L-alanine amidase	-	-	3.5.1.28	ko:K01447	-	-	R04112	RC00064,RC00141	ko00000,ko01000	-	-	-	Amidase_2,PG_binding_1
DYD3_k127_5222598_3	1150626.PHAMO_10077	1.428e-19	97.0	2DI18@1|root,301P8@2|Bacteria,1PTHJ@1224|Proteobacteria,2V5D3@28211|Alphaproteobacteria,2JYAW@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5222598_0	1380394.JADL01000002_gene1407	8.465e-206	651.0	COG2308@1|root,COG2308@2|Bacteria,1MUAD@1224|Proteobacteria,2TRI7@28211|Alphaproteobacteria,2JPWT@204441|Rhodospirillales	204441|Rhodospirillales	S	A circularly permuted ATPgrasp	-	-	-	-	-	-	-	-	-	-	-	-	CP_ATPgrasp_2
DYD3_k127_5222598_2	1211115.ALIQ01000218_gene1468	7.446e-73	256.0	COG2307@1|root,COG2307@2|Bacteria,1MVZK@1224|Proteobacteria,2TQUM@28211|Alphaproteobacteria,3N9X7@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	A predicted alpha-helical domain with a conserved ER motif.	MA20_32425	-	-	-	-	-	-	-	-	-	-	-	Alpha-E
DYD3_k127_5229566_0	370438.PTH_2565	4.413e-49	190.0	COG0438@1|root,COG0438@2|Bacteria,1TPY6@1239|Firmicutes,24834@186801|Clostridia,261PX@186807|Peptococcaceae	186801|Clostridia	M	PFAM Glycosyl transferase, group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_5229566_1	1499967.BAYZ01000085_gene5179	0.0002156	53.0	COG0438@1|root,COG0438@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_5239991_10	1292034.OR37_03649	1.435e-10	76.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,2KIWU@204458|Caulobacterales	204458|Caulobacterales	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	HemolysinCabind
DYD3_k127_5239991_12	1120936.KB907215_gene4205	0.0002771	51.0	COG3629@1|root,COG3903@1|root,COG3629@2|Bacteria,COG3903@2|Bacteria,2GIRS@201174|Actinobacteria	201174|Actinobacteria	K	transcriptional regulator, SARP family	-	-	-	-	-	-	-	-	-	-	-	-	BTAD,NB-ARC,TPR_12,Trans_reg_C
DYD3_k127_5239991_2	1161401.ASJA01000015_gene1005	1.321e-78	275.0	COG0583@1|root,COG0583@2|Bacteria,1MWVB@1224|Proteobacteria,2TTFG@28211|Alphaproteobacteria,43XD5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5239991_3	394221.Mmar10_0609	1.311e-73	254.0	COG3143@1|root,COG3143@2|Bacteria,1R91Z@1224|Proteobacteria,2U4FZ@28211|Alphaproteobacteria,4412I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	Chemotaxis phosphatase, CheZ	-	-	-	ko:K03414	ko02030,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheZ
DYD3_k127_5239991_5	1282876.BAOK01000001_gene2972	2.009e-62	217.0	COG0745@1|root,COG0745@2|Bacteria,1RDNP@1224|Proteobacteria,2U7BP@28211|Alphaproteobacteria,4BQDK@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	KT	cheY-homologous receiver domain	QU41_12045	-	-	ko:K03413	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko02022,ko02035	-	-	-	Response_reg
DYD3_k127_5239991_4	509190.Cseg_1064	7.469e-66	238.0	COG5330@1|root,COG5330@2|Bacteria,1R3VY@1224|Proteobacteria,2TUQ8@28211|Alphaproteobacteria,2KF51@204458|Caulobacterales	204458|Caulobacterales	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_5239991_7	1122218.KB893653_gene921	6.725e-40	153.0	COG2030@1|root,COG2030@2|Bacteria,1MWPK@1224|Proteobacteria,2U5CQ@28211|Alphaproteobacteria,1JTPQ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	I	PFAM MaoC domain protein dehydratase	-	GO:0003674,GO:0003824,GO:0003859,GO:0006081,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0022607,GO:0032787,GO:0042620,GO:0042621,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0046487,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901576	4.2.1.55	ko:K17865	ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200	M00373	R03027	RC00831	ko00000,ko00001,ko00002,ko01000	-	-	-	MaoC_dehydratas
DYD3_k127_5239991_1	1035191.HMPREF0185_02977	2.528e-84	296.0	COG0196@1|root,COG0196@2|Bacteria,1MV9I@1224|Proteobacteria,2TTUY@28211|Alphaproteobacteria,2KEXY@204458|Caulobacterales	204458|Caulobacterales	H	Belongs to the ribF family	ribF	-	2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_syn,Flavokinase
DYD3_k127_5239991_6	1121949.AQXT01000002_gene2994	5.491e-45	170.0	COG0597@1|root,COG0597@2|Bacteria,1RGV9@1224|Proteobacteria,2UBUC@28211|Alphaproteobacteria,43Y0I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	MU	This protein specifically catalyzes the removal of signal peptides from prolipoproteins	lspA	-	3.4.23.36	ko:K03101	ko03060,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_A8
DYD3_k127_5239991_8	394221.Mmar10_0615	1.345e-35	150.0	2C068@1|root,30N9J@2|Bacteria,1RG08@1224|Proteobacteria,2UH97@28211|Alphaproteobacteria,43YEN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3035)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3035
DYD3_k127_5239991_11	555793.WSK_2000	3.974e-07	62.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria,2KE0P@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5239991_0	1122613.ATUP01000001_gene2122	6.245e-149	481.0	COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,2TR2M@28211|Alphaproteobacteria,43WNZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	mutL	GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03572	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	DNA_mis_repair,HATPase_c_3,MutL_C
DYD3_k127_5244369_8	1282876.BAOK01000001_gene1585	1.287e-20	103.0	COG4391@1|root,COG4391@2|Bacteria,1MZNK@1224|Proteobacteria,2UD0H@28211|Alphaproteobacteria,4BSNH@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Zinc-finger domain	MA20_32275	-	-	-	-	-	-	-	-	-	-	-	zf-CHCC
DYD3_k127_5244369_11	349106.PsycPRwf_0972	0.0006973	45.0	COG5510@1|root,COG5510@2|Bacteria,1P7F0@1224|Proteobacteria,1STK4@1236|Gammaproteobacteria,3NPUB@468|Moraxellaceae	1236|Gammaproteobacteria	S	Entericidin EcnA/B family	ecnB	-	-	-	-	-	-	-	-	-	-	-	Entericidin
DYD3_k127_5244369_1	702113.PP1Y_Mpl10102	3.474e-174	554.0	COG1304@1|root,COG1304@2|Bacteria,1MUEZ@1224|Proteobacteria,2TQNW@28211|Alphaproteobacteria,2K18M@204457|Sphingomonadales	204457|Sphingomonadales	C	Dehydrogenase	lldD	-	1.1.2.3	ko:K00101	ko00620,ko01100,map00620,map01100	-	R00196	RC00044	ko00000,ko00001,ko01000	-	-	-	FMN_dh
DYD3_k127_5244369_6	1280950.HJO_06470	5.978e-29	131.0	COG2259@1|root,COG2259@2|Bacteria,1R99U@1224|Proteobacteria	1224|Proteobacteria	S	DoxX	-	-	-	-	-	-	-	-	-	-	-	-	DoxX
DYD3_k127_5244369_7	1280950.HJO_06465	1.14e-21	110.0	COG3219@1|root,COG3219@2|Bacteria,1QAP4@1224|Proteobacteria,2TTIN@28211|Alphaproteobacteria,4403E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Putative DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF2063
DYD3_k127_5244369_2	509190.Cseg_0664	2.691e-102	340.0	COG3220@1|root,COG3220@2|Bacteria,1MURE@1224|Proteobacteria,2TRZJ@28211|Alphaproteobacteria,2KG0K@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the UPF0276 family	-	-	-	ko:K09930	-	-	-	-	ko00000	-	-	-	DUF692
DYD3_k127_5244369_5	1280947.HY30_07815	1.515e-32	131.0	COG5572@1|root,COG5572@2|Bacteria,1PZ3I@1224|Proteobacteria,2VAK6@28211|Alphaproteobacteria,440GE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Predicted integral membrane protein (DUF2282)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2282
DYD3_k127_5244369_9	883078.HMPREF9695_04447	1.598e-19	97.0	COG4944@1|root,COG4944@2|Bacteria,1MXEV@1224|Proteobacteria,2TQKY@28211|Alphaproteobacteria,3JUAS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1109)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1109
DYD3_k127_5244369_3	228405.HNE_1698	7.955e-54	196.0	COG1595@1|root,COG1595@2|Bacteria,1MVS7@1224|Proteobacteria,2U0XJ@28211|Alphaproteobacteria,4402B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	sigD	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_5244369_4	1057002.KB905370_gene3416	3.025e-44	172.0	COG1917@1|root,COG1917@2|Bacteria,1PBNJ@1224|Proteobacteria,2U1VG@28211|Alphaproteobacteria,4BJ2C@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_5246330_6	631454.N177_1100	1.557e-80	278.0	COG0725@1|root,COG0725@2|Bacteria,1MVNA@1224|Proteobacteria,2U5B1@28211|Alphaproteobacteria,1JPBA@119043|Rhodobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	modA	GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015098,GO:0015103,GO:0015318,GO:0015399,GO:0015405,GO:0015412,GO:0015689,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030151,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0034220,GO:0042597,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043169,GO:0043225,GO:0043492,GO:0044464,GO:0046872,GO:0046914,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0099133,GO:1901359	-	ko:K02020	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.8	-	-	SBP_bac_11
DYD3_k127_5246330_2	1479238.JQMZ01000001_gene837	3.556e-218	697.0	COG0318@1|root,COG0318@2|Bacteria,1MWSD@1224|Proteobacteria,2TU6Y@28211|Alphaproteobacteria,43WJQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_5246330_1	392499.Swit_1948	3.935e-258	806.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TRAP@28211|Alphaproteobacteria,2K0IY@204457|Sphingomonadales	204457|Sphingomonadales	EGP	Major Facilitator	-	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
DYD3_k127_5246330_7	450851.PHZ_c1140	6.356e-57	207.0	COG0824@1|root,COG0824@2|Bacteria,1R6A6@1224|Proteobacteria,2TU6J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Thioesterase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5246330_4	1161401.ASJA01000006_gene1945	3.615e-100	337.0	COG0665@1|root,COG0665@2|Bacteria,1Q9VR@1224|Proteobacteria,2U05R@28211|Alphaproteobacteria,43X6E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG0665 Glycine D-amino acid oxidases (deaminating)	-	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_5246330_16	1267005.KB911259_gene3844	1.213e-11	71.0	2DYIC@1|root,349YF@2|Bacteria,1N9MR@1224|Proteobacteria,2UJ3I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5246330_20	331869.BAL199_13443	0.0003644	52.0	2AHIG@1|root,317W2@2|Bacteria,1NM0G@1224|Proteobacteria,2UNI2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5246330_0	1211115.ALIQ01000034_gene1992	9.551e-319	994.0	COG0422@1|root,COG0422@2|Bacteria,1MUVV@1224|Proteobacteria,2TS0S@28211|Alphaproteobacteria,3NA2A@45404|Beijerinckiaceae	28211|Alphaproteobacteria	H	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction	thiC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.99.17	ko:K03147	ko00730,ko01100,map00730,map01100	M00127	R03472	RC03251,RC03252	ko00000,ko00001,ko00002,ko01000	-	-	-	ThiC-associated,ThiC_Rad_SAM
DYD3_k127_5246330_11	215803.DB30_6358	1.618e-29	124.0	arCOG09511@1|root,2Z9DH@2|Bacteria,1MXRV@1224|Proteobacteria,42N0Y@68525|delta/epsilon subdivisions,2WK5S@28221|Deltaproteobacteria,2YY46@29|Myxococcales	28221|Deltaproteobacteria	S	FRG	-	-	-	-	-	-	-	-	-	-	-	-	FRG
DYD3_k127_5246330_17	1042209.HK44_015930	7.262e-11	69.0	2EE0K@1|root,337VE@2|Bacteria,1NIB2@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5246330_19	313589.JNB_02190	0.0002304	51.0	COG0346@1|root,COG0346@2|Bacteria,2I1S1@201174|Actinobacteria,4FJHZ@85021|Intrasporangiaceae	201174|Actinobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_5246330_3	1254432.SCE1572_08525	1.193e-153	502.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,42MPR@68525|delta/epsilon subdivisions,2WNM3@28221|Deltaproteobacteria,2Z06N@29|Myxococcales	28221|Deltaproteobacteria	Q	Multicopper oxidase	-	-	-	ko:K04753	-	-	-	-	ko00000	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
DYD3_k127_5246330_12	565045.NOR51B_2328	2.795e-25	120.0	COG1228@1|root,COG1228@2|Bacteria,1MY4V@1224|Proteobacteria,1RZRK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1
DYD3_k127_5246330_14	715451.ambt_12010	3.432e-17	93.0	2CBAE@1|root,31814@2|Bacteria,1R3F3@1224|Proteobacteria,1T675@1236|Gammaproteobacteria,46DFK@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5246330_15	702113.PP1Y_Mpl6642	2.739e-14	81.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria,2KE0P@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5246330_9	1280947.HY30_05220	1.189e-36	143.0	2E3B5@1|root,32YAP@2|Bacteria,1N7KQ@1224|Proteobacteria,2UHG1@28211|Alphaproteobacteria,43YME@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2721)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2721
DYD3_k127_5246330_8	1161401.ASJA01000006_gene1956	4.095e-37	146.0	COG0526@1|root,COG0526@2|Bacteria,1N81A@1224|Proteobacteria,2UGCI@28211|Alphaproteobacteria,43Y4I@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CO	Thioredoxin-like	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_7
DYD3_k127_5246330_5	1161401.ASJA01000001_gene268	1.702e-92	323.0	COG1785@1|root,COG1785@2|Bacteria,1MXI2@1224|Proteobacteria,2TTUZ@28211|Alphaproteobacteria,43WV2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Belongs to the alkaline phosphatase family	phoA	-	3.1.3.1	ko:K01077	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	-	-	-	Alk_phosphatase
DYD3_k127_5246330_10	190650.CC_3702	1.655e-35	136.0	COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,2TRCK@28211|Alphaproteobacteria,2KFGC@204458|Caulobacterales	204458|Caulobacterales	E	peptidase	-	-	3.4.15.5	ko:K01284	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M3
DYD3_k127_5246330_21	502025.Hoch_3116	0.0004295	47.0	COG4249@1|root,COG4249@2|Bacteria,1REY7@1224|Proteobacteria,43A18@68525|delta/epsilon subdivisions,2X4EQ@28221|Deltaproteobacteria,2YYVQ@29|Myxococcales	28221|Deltaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
DYD3_k127_5258135_2	59538.XP_005978144.1	9.641e-125	406.0	COG3491@1|root,KOG0143@2759|Eukaryota,38FUK@33154|Opisthokonta,3CNJ9@33208|Metazoa,3E4QF@33213|Bilateria	33208|Metazoa	Q	non-haem dioxygenase in morphine synthesis N-terminal	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy,DIOX_N
DYD3_k127_5258135_5	1121123.AUAO01000002_gene562	7.308e-91	308.0	COG0524@1|root,COG0524@2|Bacteria,1MV5B@1224|Proteobacteria,2TSUM@28211|Alphaproteobacteria,2KH4I@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway	rbsK	-	2.7.1.15	ko:K00852	ko00030,map00030	-	R01051,R02750	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
DYD3_k127_5258135_4	983920.Y88_2864	6.473e-100	334.0	COG1957@1|root,COG1957@2|Bacteria,1MUIW@1224|Proteobacteria,2TSXQ@28211|Alphaproteobacteria,2KBDZ@204457|Sphingomonadales	204457|Sphingomonadales	F	Inosine-uridine preferring nucleoside hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	IU_nuc_hydro
DYD3_k127_5258135_7	1173024.KI912149_gene5660	3.88e-40	153.0	COG0614@1|root,COG0614@2|Bacteria,1G71C@1117|Cyanobacteria	1117|Cyanobacteria	P	PD-(D/E)XK nuclease superfamily	-	-	-	-	-	-	-	-	-	-	-	-	PDDEXK_3
DYD3_k127_5258135_1	745310.G432_08230	3.597e-132	433.0	COG1972@1|root,COG1972@2|Bacteria,1MXXX@1224|Proteobacteria,2TU8A@28211|Alphaproteobacteria,2K07T@204457|Sphingomonadales	204457|Sphingomonadales	F	nucleoside	-	-	-	ko:K03317	-	-	-	-	ko00000	2.A.41	-	-	Gate,Nucleos_tra2_C,Nucleos_tra2_N
DYD3_k127_5258135_0	450851.PHZ_c1262	2.564e-208	659.0	COG2256@1|root,COG2256@2|Bacteria,1MUVS@1224|Proteobacteria,2TQVF@28211|Alphaproteobacteria,2KFPV@204458|Caulobacterales	204458|Caulobacterales	L	AAA ATPase central domain protein	-	-	-	ko:K07478	-	-	-	-	ko00000	-	-	-	AAA,AAA_assoc_2,MgsA_C,RuvB_N
DYD3_k127_5258135_9	1123242.JH636434_gene4309	1.666e-32	146.0	COG1858@1|root,COG1858@2|Bacteria,2IY7G@203682|Planctomycetes	203682|Planctomycetes	C	cytochrome c peroxidase	-	-	1.11.1.5	ko:K00428	-	-	-	-	ko00000,ko01000	-	-	-	CCP_MauG,Cytochrom_C
DYD3_k127_5258135_8	314254.OA2633_03436	3.396e-35	152.0	COG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,2UBUP@28211|Alphaproteobacteria,43YBT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Important for reducing fluoride concentration in the cell, thus reducing its toxicity	crcB	-	-	ko:K06199	-	-	-	-	ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3	-	-	CRCB
DYD3_k127_5258135_3	1161401.ASJA01000009_gene1802	2.976e-103	351.0	COG0564@1|root,COG0564@2|Bacteria,1MVDX@1224|Proteobacteria,2TTQC@28211|Alphaproteobacteria,43WKV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the pseudouridine synthase RluA family	rluC	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.24	ko:K06179	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_5258135_6	1229204.AMYY01000011_gene183	1.777e-56	214.0	COG5387@1|root,COG5387@2|Bacteria,1Q3B5@1224|Proteobacteria,2TVK1@28211|Alphaproteobacteria,4BQD2@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	Chaperone required for the assembly of	-	-	-	-	-	-	-	-	-	-	-	-	ATP12
DYD3_k127_5301605_14	1340493.JNIF01000003_gene2326	8.094e-36	149.0	COG1566@1|root,COG1566@2|Bacteria	2|Bacteria	V	PFAM secretion protein HlyD family protein	-	-	-	ko:K02005,ko:K02022	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3
DYD3_k127_5301605_10	159450.NH14_00730	2.045e-73	257.0	COG0446@1|root,COG0446@2|Bacteria,1NR3M@1224|Proteobacteria,2VJSV@28216|Betaproteobacteria,1K35J@119060|Burkholderiaceae	28216|Betaproteobacteria	S	PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase	-	-	1.18.1.3	ko:K00529	ko00071,ko00360,ko01120,ko01220,map00071,map00360,map01120,map01220	M00545	R02000,R06782,R06783	RC00098	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	AIF_C,Pyr_redox_2,Reductase_C
DYD3_k127_5301605_13	1161401.ASJA01000011_gene1573	5.705e-42	161.0	COG0802@1|root,COG0802@2|Bacteria,1RGYU@1224|Proteobacteria,2UBQ9@28211|Alphaproteobacteria,43Y3K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	ATPase or kinase	-	-	2.7.1.221	ko:K06925,ko:K07102	ko00520,ko01100,map00520,map01100	-	R08968,R11024	RC00002,RC00078	ko00000,ko00001,ko01000,ko03016	-	-	-	TsaE
DYD3_k127_5301605_6	394221.Mmar10_0083	1.288e-115	385.0	COG3178@1|root,COG3178@2|Bacteria,1MXCH@1224|Proteobacteria,2TSJD@28211|Alphaproteobacteria,43X8Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	phosphotransferase related to Ser Thr protein kinases	MA20_24090	-	2.7.1.221	ko:K07102	ko00520,ko01100,map00520,map01100	-	R08968,R11024	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	APH,TsaE
DYD3_k127_5301605_9	573065.Astex_0081	6.38e-75	274.0	COG1208@1|root,COG1208@2|Bacteria,1R9ZD@1224|Proteobacteria,2TU2V@28211|Alphaproteobacteria,2KGEF@204458|Caulobacterales	204458|Caulobacterales	JM	Nucleotidyl transferase	-	-	2.7.7.99	ko:K00992	ko00520,ko01100,map00520,map01100	-	R11025	RC00002	ko00000,ko00001,ko01000	-	-	-	NTP_transf_3
DYD3_k127_5301605_1	314254.OA2633_11695	3.252e-259	831.0	COG2887@1|root,COG3893@1|root,COG2887@2|Bacteria,COG3893@2|Bacteria,1MY2G@1224|Proteobacteria,2TS74@28211|Alphaproteobacteria,43X20@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	COG3893 Inactivated superfamily I helicase	addB	-	3.6.4.12	ko:K16899	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1
DYD3_k127_5301605_0	1161401.ASJA01000011_gene1569	1.686e-283	910.0	COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2TQJZ@28211|Alphaproteobacteria,43WXT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Belongs to the helicase family. UvrD subfamily	addA	-	3.6.4.12	ko:K16898	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
DYD3_k127_5301605_11	1161401.ASJA01000011_gene1568	8.221e-50	181.0	COG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,2UCCR@28211|Alphaproteobacteria,43Y3Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Belongs to the thioredoxin family	trxA	-	-	ko:K03671	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	Thioredoxin
DYD3_k127_5301605_3	926559.JoomaDRAFT_3615	2.873e-150	488.0	COG1680@1|root,COG1680@2|Bacteria,4NGZR@976|Bacteroidetes,1HXEI@117743|Flavobacteriia	976|Bacteroidetes	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_5301605_5	639283.Snov_3922	3.681e-124	412.0	COG0285@1|root,COG0285@2|Bacteria,1MVCH@1224|Proteobacteria,2TR64@28211|Alphaproteobacteria,3EY1A@335928|Xanthobacteraceae	28211|Alphaproteobacteria	H	Mur ligase middle domain	folC	-	6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	Mur_ligase_M
DYD3_k127_5301605_4	1123059.KB823013_gene438	2.824e-124	407.0	COG0777@1|root,COG0777@2|Bacteria,1MW8G@1224|Proteobacteria,2TRSH@28211|Alphaproteobacteria,43WIW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA	accD	-	2.1.3.15,6.4.1.2	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
DYD3_k127_5301605_8	1122613.ATUP01000001_gene1529	2.38e-81	285.0	COG0159@1|root,COG0159@2|Bacteria,1MXJV@1224|Proteobacteria,2TQN2@28211|Alphaproteobacteria,43WDX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate	trpA	-	4.2.1.20	ko:K01695	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000	-	-	-	Trp_syntA
DYD3_k127_5301605_2	1207058.L53_14305	1.835e-213	673.0	COG0133@1|root,COG0133@2|Bacteria,1MUS8@1224|Proteobacteria,2TSHK@28211|Alphaproteobacteria,43WCG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine	trpB	GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.1.20	ko:K01696	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
DYD3_k127_5301605_12	1280946.HY29_09955	5.11e-47	188.0	COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,2U7CH@28211|Alphaproteobacteria,43Y03@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the TrpF family	trpF	-	5.3.1.24	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03509	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	PRAI
DYD3_k127_5301605_7	394221.Mmar10_0095	7.239e-96	323.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,43WDG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5312677_9	1280947.HY30_06435	2.242e-48	188.0	COG1192@1|root,COG1192@2|Bacteria,1NY4Z@1224|Proteobacteria,2USTY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	Anion-transporting ATPase	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
DYD3_k127_5312677_10	1479238.JQMZ01000001_gene1623	9.154e-41	165.0	COG1266@1|root,COG1266@2|Bacteria,1MY1N@1224|Proteobacteria,2U3EH@28211|Alphaproteobacteria,4408V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	CAAX protease self-immunity	-	-	-	ko:K07052	-	-	-	-	ko00000	-	-	-	Abi
DYD3_k127_5312677_14	1282360.ABAC460_05145	1.379e-18	98.0	2EQCU@1|root,33HYW@2|Bacteria,1NNJJ@1224|Proteobacteria,2UMTZ@28211|Alphaproteobacteria,2KJRK@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5312677_0	314254.OA2633_04171	6.059e-211	666.0	COG1206@1|root,COG1206@2|Bacteria,1MWNQ@1224|Proteobacteria,2TR6M@28211|Alphaproteobacteria,43X17@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs	trmFO	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363	2.1.1.74	ko:K04094	-	-	-	-	ko00000,ko01000,ko03016,ko03036	-	-	-	GIDA
DYD3_k127_5312677_2	314254.OA2633_04176	9.998e-133	447.0	COG1506@1|root,COG1506@2|Bacteria,1MUJ3@1224|Proteobacteria,2TUZZ@28211|Alphaproteobacteria,43W55@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Peptidase S9 prolyl oligopeptidase active site	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S9
DYD3_k127_5312677_17	1121949.AQXT01000002_gene408	1.43e-08	64.0	COG0810@1|root,COG0810@2|Bacteria,1PEDH@1224|Proteobacteria,2V6JD@28211|Alphaproteobacteria,43XGQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_5312677_12	1479238.JQMZ01000001_gene1618	7.297e-35	144.0	COG1562@1|root,COG1562@2|Bacteria,1MX4W@1224|Proteobacteria,2U08T@28211|Alphaproteobacteria,43YAK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Squalene/phytoene synthase	crtB	-	2.5.1.32,2.5.1.99	ko:K02291,ko:K18163	ko00906,ko01062,ko01100,ko01110,ko04714,map00906,map01062,map01100,map01110,map04714	M00097	R02065,R04218,R07270,R10177	RC00362,RC01101,RC02869	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029	-	-	-	SQS_PSY
DYD3_k127_5312677_7	402881.Plav_3039	1.227e-64	228.0	COG3748@1|root,COG3748@2|Bacteria,1RFIZ@1224|Proteobacteria,2U7B1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Urate oxidase N-terminal	-	-	-	-	-	-	-	-	-	-	-	-	Urate_ox_N
DYD3_k127_5312677_3	314254.OA2633_04186	8.05e-90	299.0	COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2TU3T@28211|Alphaproteobacteria,43WEZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Destroys radicals which are normally produced within the cells and which are toxic to biological systems	sodB	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
DYD3_k127_5312677_4	314254.OA2633_04191	6.816e-88	305.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,43WQS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG1680 Beta-lactamase class C and other penicillin binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_5312677_15	1123503.KB908058_gene1019	2.098e-17	96.0	COG3737@1|root,COG3737@2|Bacteria,1N083@1224|Proteobacteria,2U95K@28211|Alphaproteobacteria,2KH9U@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF498/DUF598)	-	-	-	-	-	-	-	-	-	-	-	-	DUF498
DYD3_k127_5312677_1	1122613.ATUP01000001_gene376	1.05e-155	509.0	COG0342@1|root,COG0342@2|Bacteria,1MV5U@1224|Proteobacteria,2TQYG@28211|Alphaproteobacteria,43W7E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secD	-	-	ko:K03072,ko:K12257	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
DYD3_k127_5312677_13	1161401.ASJA01000001_gene541	4.646e-34	134.0	COG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,2UBZ6@28211|Alphaproteobacteria,43YEF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Preprotein translocase subunit	yajC	-	-	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	YajC
DYD3_k127_5312677_8	394221.Mmar10_1901	2.183e-50	200.0	COG1388@1|root,COG4942@1|root,COG1388@2|Bacteria,COG4942@2|Bacteria,1RD24@1224|Proteobacteria,2TUNI@28211|Alphaproteobacteria,43ZN5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Lysin motif	nlpD	-	-	ko:K06194	-	-	-	-	ko00000	1.A.34.1.2	-	-	LysM,Peptidase_M23
DYD3_k127_5312677_6	1122613.ATUP01000001_gene380	2.126e-66	234.0	COG2518@1|root,COG2518@2|Bacteria,1MXQC@1224|Proteobacteria,2TVCY@28211|Alphaproteobacteria,440SH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	pcm	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	PCMT
DYD3_k127_5312677_5	450851.PHZ_c1959	2.201e-81	290.0	COG0496@1|root,COG0496@2|Bacteria,1MVHE@1224|Proteobacteria,2TQXZ@28211|Alphaproteobacteria,2KFJK@204458|Caulobacterales	204458|Caulobacterales	S	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates	surE	-	3.1.3.5	ko:K03787	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	-	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000	-	-	-	SurE
DYD3_k127_5312677_11	1479238.JQMZ01000001_gene1609	2.529e-39	147.0	COG0172@1|root,COG0172@2|Bacteria,1MUJF@1224|Proteobacteria,2TR4T@28211|Alphaproteobacteria,43WP3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)	serS	-	6.1.1.11	ko:K01875	ko00970,map00970	M00359,M00360	R03662,R08218	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Seryl_tRNA_N,tRNA-synt_2b
DYD3_k127_5325289_0	1121033.AUCF01000027_gene2758	9.314e-188	590.0	COG1077@1|root,COG1077@2|Bacteria,1MUMW@1224|Proteobacteria,2TTQ2@28211|Alphaproteobacteria,2JPHS@204441|Rhodospirillales	204441|Rhodospirillales	D	Rod shape-determining protein MreB	mreB	-	-	ko:K03569	-	-	-	-	ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1	-	-	MreB_Mbl
DYD3_k127_5325289_1	1122613.ATUP01000001_gene580	6.014e-62	222.0	COG0398@1|root,COG0398@2|Bacteria,1QV55@1224|Proteobacteria,2UAAB@28211|Alphaproteobacteria,43XV4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	SNARE associated Golgi protein	-	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD3_k127_5325289_2	1161401.ASJA01000001_gene443	9.336e-44	164.0	2FGCD@1|root,3488K@2|Bacteria,1P0ZJ@1224|Proteobacteria,2UUGV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5350738_2	1449065.JMLL01000018_gene1830	6.733e-128	417.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,43MWW@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_5350738_0	318996.AXAZ01000009_gene4305	8.077e-161	522.0	COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,3JR8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc,Trans_reg_C
DYD3_k127_5350738_1	450851.PHZ_c3358	1.069e-134	439.0	COG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,2TTZG@28211|Alphaproteobacteria,2KFNE@204458|Caulobacterales	204458|Caulobacterales	L	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	-	-	2.1.1.37	ko:K00558	ko00270,ko01100,ko05206,map00270,map01100,map05206	M00035	R04858	RC00003,RC00332	ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_methylase
DYD3_k127_5350738_4	66875.JODY01000003_gene3518	1.458e-56	211.0	2DBIF@1|root,2Z9FG@2|Bacteria,2I9FF@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5350738_3	1280948.HY36_03205	3.299e-71	252.0	COG0657@1|root,COG0657@2|Bacteria,1NEXK@1224|Proteobacteria,2U5X1@28211|Alphaproteobacteria,43X64@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	COG0657 Esterase lipase	-	-	-	ko:K01066	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_3
DYD3_k127_5350738_6	1353537.TP2_15200	3.145e-07	58.0	COG4319@1|root,COG4319@2|Bacteria,1RF3Q@1224|Proteobacteria,2U78H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF4440
DYD3_k127_5350738_5	1305735.JAFT01000005_gene3584	3.222e-18	91.0	COG2005@1|root,COG2005@2|Bacteria,1P9SX@1224|Proteobacteria,2UC9Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Transcriptional regulator, ModE family	modE	-	-	ko:K02019	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1
DYD3_k127_539291_9	1297863.APJF01000001_gene2319	2.356e-28	116.0	COG5395@1|root,COG5395@2|Bacteria,1N0CF@1224|Proteobacteria,2UC5R@28211|Alphaproteobacteria,3JYQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2306)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2306
DYD3_k127_539291_7	1385935.N836_16230	4.559e-31	134.0	COG0596@1|root,COG0596@2|Bacteria,1G05K@1117|Cyanobacteria	1117|Cyanobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_539291_2	420324.KI911940_gene5188	2.897e-104	349.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,1JRZK@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	PFAM regulatory protein LysR	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_539291_6	1089552.KI911559_gene1707	4.205e-43	167.0	COG3658@1|root,COG3658@2|Bacteria,1RB03@1224|Proteobacteria,2VGBI@28211|Alphaproteobacteria,2JTFK@204441|Rhodospirillales	204441|Rhodospirillales	C	Prokaryotic cytochrome b561	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
DYD3_k127_539291_3	288000.BBta_3653	2.986e-57	202.0	COG1765@1|root,COG1765@2|Bacteria,1RIBQ@1224|Proteobacteria,2U9TC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Osmc family	-	-	-	-	-	-	-	-	-	-	-	-	OsmC
DYD3_k127_539291_0	366602.Caul_1953	4.46e-191	603.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,2KG3B@204458|Caulobacterales	28211|Alphaproteobacteria	I	Belongs to the thiolase family	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_539291_4	194867.ALBQ01000007_gene2179	4.539e-55	198.0	COG3544@1|root,COG3544@2|Bacteria,1MVU8@1224|Proteobacteria,2TSBT@28211|Alphaproteobacteria,2K335@204457|Sphingomonadales	204457|Sphingomonadales	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF305
DYD3_k127_539291_10	588932.JHOF01000018_gene1246	3.046e-24	114.0	COG3678@1|root,COG3678@2|Bacteria,1N273@1224|Proteobacteria,2UCY6@28211|Alphaproteobacteria,2KJYP@204458|Caulobacterales	204458|Caulobacterales	NPTU	Heavy-metal resistance	-	-	-	-	-	-	-	-	-	-	-	-	Metal_resist
DYD3_k127_539291_5	509190.Cseg_2521	2.383e-43	167.0	COG1595@1|root,COG1595@2|Bacteria,1N413@1224|Proteobacteria,2U89X@28211|Alphaproteobacteria,2KGWJ@204458|Caulobacterales	204458|Caulobacterales	K	TIGRFAM RNA polymerase sigma factor, sigma-70 family	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_539291_12	1280954.HPO_18475	3.632e-13	80.0	COG2372@1|root,COG2372@2|Bacteria,1NHAZ@1224|Proteobacteria,2VFKI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	CopC domain	-	-	-	-	-	-	-	-	-	-	-	-	CopC
DYD3_k127_539291_11	314262.MED193_21931	5.825e-15	84.0	COG1276@1|root,COG1276@2|Bacteria,1MXGC@1224|Proteobacteria,2TVGX@28211|Alphaproteobacteria,2P3V0@2433|Roseobacter	28211|Alphaproteobacteria	P	Copper resistance protein D	ycnJ	-	-	ko:K07245,ko:K14166	-	-	-	-	ko00000,ko02000	9.B.62.1	-	-	CopC,CopD
DYD3_k127_539291_1	1161401.ASJA01000013_gene771	4.683e-157	511.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TQXH@28211|Alphaproteobacteria,43ZDT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	Multicopper oxidase	copA	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
DYD3_k127_5439253_6	1515615.HQ41_02385	2.782e-74	267.0	COG3172@1|root,COG3172@2|Bacteria,4NEQF@976|Bacteroidetes,2FN8P@200643|Bacteroidia,22WZJ@171551|Porphyromonadaceae	976|Bacteroidetes	H	NAD metabolism ATPase kinase	-	-	-	-	-	-	-	-	-	-	-	-	DUF4301
DYD3_k127_5439253_2	627192.SLG_31400	8.138e-146	478.0	COG2960@1|root,COG2960@2|Bacteria,1RGT9@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_5439253_0	627192.SLG_31420	2.492e-224	720.0	COG0551@1|root,COG0551@2|Bacteria,1NU8S@1224|Proteobacteria,2TWWM@28211|Alphaproteobacteria,2K3KC@204457|Sphingomonadales	204457|Sphingomonadales	L	Protein of unknown function (DUF1587)	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt3,PSD2,PSD3,PSD4,PSD5
DYD3_k127_5439253_4	627192.SLG_31380	2.387e-96	324.0	COG4886@1|root,COG4886@2|Bacteria,1N4KB@1224|Proteobacteria	1224|Proteobacteria	S	Planctomycete cytochrome C	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt1
DYD3_k127_5439253_1	1246459.KB898368_gene2605	7.649e-162	523.0	COG0402@1|root,COG0402@2|Bacteria,1MUPT@1224|Proteobacteria,2TU1V@28211|Alphaproteobacteria,4BB72@82115|Rhizobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	guaD	-	3.5.4.3	ko:K01487	ko00230,ko01100,map00230,map01100	-	R01676	RC00204	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1
DYD3_k127_5439253_7	1522072.IL54_0523	2.202e-51	188.0	2DMP1@1|root,32SS8@2|Bacteria,1N6W6@1224|Proteobacteria,2UB7H@28211|Alphaproteobacteria,2K674@204457|Sphingomonadales	204457|Sphingomonadales	S	Protein of unknown function (DUF3237)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3237
DYD3_k127_5439253_5	573065.Astex_3314	1.117e-94	322.0	COG4188@1|root,COG4188@2|Bacteria,1NAS2@1224|Proteobacteria,2UH1M@28211|Alphaproteobacteria,2KIK3@204458|Caulobacterales	204458|Caulobacterales	S	dienelactone hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_546867_2	1381123.AYOD01000014_gene2321	7.213e-32	134.0	COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,2TT5N@28211|Alphaproteobacteria,43K44@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	MgtC family	-	-	-	ko:K07507	-	-	-	-	ko00000,ko02000	9.B.20	-	-	MgtC
DYD3_k127_546867_3	246199.CUS_8144	2.687e-17	93.0	2E3ZY@1|root,32YWV@2|Bacteria,1W584@1239|Firmicutes	1239|Firmicutes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_546867_1	745014.OMB55_00014530	5.1e-63	237.0	COG0412@1|root,COG0412@2|Bacteria,1PSEB@1224|Proteobacteria	1224|Proteobacteria	Q	Dienelactone hydrolase	-	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
DYD3_k127_546867_0	1042377.AFPJ01000051_gene33	3.364e-82	282.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,1RYRB@1236|Gammaproteobacteria,46479@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_547815_5	1231392.OCGS_2416	1.901e-24	106.0	COG3088@1|root,COG3088@2|Bacteria,1MZZ5@1224|Proteobacteria,2U96P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	subunit of a heme lyase	cycL	-	-	ko:K02200	-	-	-	-	ko00000	-	-	-	CcmH
DYD3_k127_547815_4	394221.Mmar10_1658	2.702e-58	214.0	COG0526@1|root,COG0526@2|Bacteria,1RI3N@1224|Proteobacteria,2TSEW@28211|Alphaproteobacteria,43YKV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CO	Thiol disulfide interchange protein	ccmG	-	-	ko:K02199	-	-	-	-	ko00000,ko03110	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_547815_0	1207063.P24_03955	2.336e-185	601.0	COG1138@1|root,COG1138@2|Bacteria,1MUQS@1224|Proteobacteria,2TRNG@28211|Alphaproteobacteria,2JR5K@204441|Rhodospirillales	204441|Rhodospirillales	O	COG1138 Cytochrome c biogenesis factor	ccmF	-	-	ko:K02198	-	-	-	-	ko00000,ko02000	9.B.14.1	-	-	CcmF_C,Cytochrom_C_asm
DYD3_k127_547815_2	1217720.ALOX01000034_gene336	4.504e-123	413.0	COG1506@1|root,COG1506@2|Bacteria,1R968@1224|Proteobacteria,2TXT1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Tannase and feruloyl esterase	-	-	-	-	-	-	-	-	-	-	-	-	Tannase
DYD3_k127_547815_3	1280946.HY29_11435	1.113e-106	353.0	COG1262@1|root,COG1262@2|Bacteria,1MZ25@1224|Proteobacteria,2TRJH@28211|Alphaproteobacteria,43XK5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase
DYD3_k127_547815_1	1265313.HRUBRA_00911	3.267e-148	489.0	COG3119@1|root,COG3119@2|Bacteria,1MV92@1224|Proteobacteria,1RPDE@1236|Gammaproteobacteria,1J92A@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	P	Sulfatase	atsA	-	3.1.6.1	ko:K01130	ko00140,ko00600,map00140,map00600	-	R03980,R04856	RC00128,RC00231	ko00000,ko00001,ko01000	-	-	-	Sulfatase
DYD3_k127_5484437_2	189753.AXAS01000001_gene3634	9.803e-13	67.0	COG0559@1|root,COG0559@2|Bacteria,1P3FU@1224|Proteobacteria,2U0D7@28211|Alphaproteobacteria,3JXW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
DYD3_k127_5484437_0	1300350.DSW25_11810	4.879e-111	370.0	COG4177@1|root,COG4177@2|Bacteria,1NY9G@1224|Proteobacteria,2TTSN@28211|Alphaproteobacteria,3ZXP7@60136|Sulfitobacter	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
DYD3_k127_5484437_1	1120972.AUMH01000004_gene1472	1.875e-80	272.0	COG0183@1|root,COG0183@2|Bacteria,1TP07@1239|Firmicutes,4H9RJ@91061|Bacilli,277YV@186823|Alicyclobacillaceae	91061|Bacilli	I	Belongs to the thiolase family	pcaF	-	2.3.1.174,2.3.1.223,2.3.1.9	ko:K00626,ko:K02615	ko00071,ko00072,ko00280,ko00310,ko00360,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00360,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R00829,R01177,R09839	RC00004,RC00326,RC03003	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_5500596_4	1121948.AUAC01000008_gene783	9.426e-26	112.0	COG0760@1|root,COG0760@2|Bacteria,1MZDK@1224|Proteobacteria,2TVQD@28211|Alphaproteobacteria,43XE3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Peptidylprolyl isomerase	prsA	-	5.2.1.8	ko:K01802,ko:K03769	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase,Rotamase_2,Rotamase_3
DYD3_k127_5500596_0	1479238.JQMZ01000001_gene1273	0.0	1242.0	COG0653@1|root,COG0653@2|Bacteria,1MUJZ@1224|Proteobacteria,2TTBF@28211|Alphaproteobacteria,43WT3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	secA	GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015627,GO:0015628,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:0098776,GO:1901265,GO:1901363,GO:1904680	-	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4	-	-	SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW
DYD3_k127_5500596_7	264198.Reut_B5788	1.343e-06	61.0	2A8ZW@1|root,30Y3S@2|Bacteria,1P55Z@1224|Proteobacteria,2W8B9@28216|Betaproteobacteria,1K8JH@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DoxX
DYD3_k127_5500596_6	935261.JAGL01000002_gene1474	1.233e-11	78.0	2A8ZW@1|root,30Y3S@2|Bacteria,1P55Z@1224|Proteobacteria,2UYJ4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5500596_3	391600.ABRU01000025_gene1097	7.189e-70	250.0	COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2VG2H@28211|Alphaproteobacteria,2KJUZ@204458|Caulobacterales	204458|Caulobacterales	P	Rieske-like [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
DYD3_k127_5500596_1	69395.JQLZ01000005_gene3784	2.12e-124	416.0	COG0763@1|root,COG0763@2|Bacteria,1MVBI@1224|Proteobacteria,2TSEA@28211|Alphaproteobacteria,2KFQ6@204458|Caulobacterales	204458|Caulobacterales	M	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxB	-	2.4.1.182	ko:K00748	ko00540,ko01100,map00540,map01100	M00060	R04606	RC00005,RC00059	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT19	-	LpxB
DYD3_k127_5500596_5	1121948.AUAC01000008_gene786	3.927e-15	87.0	2CK46@1|root,337US@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Gcw_chp
DYD3_k127_5500596_2	394221.Mmar10_2270	2.139e-72	247.0	COG0825@1|root,COG0825@2|Bacteria,1MURN@1224|Proteobacteria,2TR6V@28211|Alphaproteobacteria,43WUS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	accA	-	2.1.3.15,6.4.1.2	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	ACCA
DYD3_k127_5515647_1	1123503.KB908056_gene1955	1.27e-57	220.0	COG2240@1|root,COG4923@1|root,COG2240@2|Bacteria,COG4923@2|Bacteria,1MVC9@1224|Proteobacteria,2U2CH@28211|Alphaproteobacteria,2KGNA@204458|Caulobacterales	204458|Caulobacterales	H	Phosphomethylpyrimidine kinase	-	-	2.7.1.35	ko:K00868	ko00750,ko01100,map00750,map01100	-	R00174,R01909,R02493	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	Phos_pyr_kin
DYD3_k127_5515647_2	509190.Cseg_0218	7.914e-43	168.0	COG2240@1|root,COG2240@2|Bacteria,1MVC9@1224|Proteobacteria,2U2CH@28211|Alphaproteobacteria,2KGNA@204458|Caulobacterales	204458|Caulobacterales	H	Phosphomethylpyrimidine kinase	-	-	2.7.1.35	ko:K00868	ko00750,ko01100,map00750,map01100	-	R00174,R01909,R02493	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	Phos_pyr_kin
DYD3_k127_5515647_0	1122929.KB908218_gene1634	3.576e-73	258.0	COG2301@1|root,COG2301@2|Bacteria,1MW0A@1224|Proteobacteria,2TTC0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Belongs to the HpcH HpaI aldolase family	citE	-	3.1.2.30,4.1.3.34	ko:K01644,ko:K14451	ko00630,ko01120,ko01200,ko02020,map00630,map01120,map01200,map02020	M00373	R00362,R10612	RC00004,RC00014,RC00067,RC01118	ko00000,ko00001,ko00002,ko01000	-	-	-	HpcH_HpaI
DYD3_k127_553987_7	1248916.ANFY01000010_gene335	6.363e-15	81.0	COG2010@1|root,COG2010@2|Bacteria,1NBIA@1224|Proteobacteria,2UHSH@28211|Alphaproteobacteria,2KEUQ@204457|Sphingomonadales	204457|Sphingomonadales	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
DYD3_k127_553987_0	1082931.KKY_2582	2.075e-206	657.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Dehydrogenase	-	-	1.1.2.8	ko:K00114	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
DYD3_k127_553987_2	670292.JH26_13725	7.502e-116	386.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2TR47@28211|Alphaproteobacteria,1JQQ0@119045|Methylobacteriaceae	28211|Alphaproteobacteria	G	PFAM Glucose Sorbosone dehydrogenase	yliI	GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016901,GO:0019842,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046872,GO:0048037,GO:0048038,GO:0055114,GO:0070968,GO:0097159,GO:1901363	1.1.5.2	ko:K00117,ko:K21430	ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130	-	R06620	RC00066	ko00000,ko00001,ko01000	-	-	-	GSDH
DYD3_k127_553987_8	1346791.M529_18895	3.986e-13	82.0	COG0346@1|root,COG0346@2|Bacteria,1MWCV@1224|Proteobacteria,2U47B@28211|Alphaproteobacteria,2KDAF@204457|Sphingomonadales	204457|Sphingomonadales	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_553987_3	1122613.ATUP01000001_gene1942	6.366e-108	354.0	COG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,2TR57@28211|Alphaproteobacteria,43X0F@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	truA	GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360	5.4.99.12	ko:K06173	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	PseudoU_synth_1
DYD3_k127_553987_5	1429916.X566_11715	1.814e-25	123.0	COG3153@1|root,COG3153@2|Bacteria,1RA42@1224|Proteobacteria,2UDUB@28211|Alphaproteobacteria,3K67P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) family	-	-	-	ko:K03824	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_1,Acetyltransf_9
DYD3_k127_553987_1	1161401.ASJA01000003_gene2984	7.534e-118	386.0	COG0223@1|root,COG0223@2|Bacteria,1MU4Q@1224|Proteobacteria,2TSWX@28211|Alphaproteobacteria,43W8E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	fmt	GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.1.2.9	ko:K00604	ko00670,ko00970,map00670,map00970	-	R03940	RC00026,RC00165	ko00000,ko00001,ko01000	-	-	-	Formyl_trans_C,Formyl_trans_N
DYD3_k127_553987_4	1123366.TH3_04234	6.015e-43	163.0	COG2258@1|root,COG2258@2|Bacteria,1PVVH@1224|Proteobacteria,2UNAM@28211|Alphaproteobacteria,2JYAB@204441|Rhodospirillales	204441|Rhodospirillales	S	MOSC domain	-	-	-	-	-	-	-	-	-	-	-	-	MOSC
DYD3_k127_553987_6	1121013.P873_13525	1.668e-22	106.0	COG2304@1|root,COG2304@2|Bacteria,1RBVD@1224|Proteobacteria,1S39D@1236|Gammaproteobacteria,1XABN@135614|Xanthomonadales	135614|Xanthomonadales	S	von Willebrand factor (vWF) type A domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5556779_0	219305.MCAG_03829	9.17e-05	51.0	2EK9X@1|root,33E07@2|Bacteria,2IGXR@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5571564_4	566466.NOR53_477	2.997e-74	259.0	COG0457@1|root,COG5616@1|root,COG0457@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,1RWT6@1236|Gammaproteobacteria,1J7Y7@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5571564_1	644107.SL1157_1622	9.62e-128	414.0	COG0037@1|root,COG0037@2|Bacteria,1MW5Q@1224|Proteobacteria,2TRDH@28211|Alphaproteobacteria,4NB3V@97050|Ruegeria	28211|Alphaproteobacteria	J	Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system	ttcA	-	-	ko:K14058	-	-	-	-	ko00000,ko03016	-	-	-	ATP_bind_3
DYD3_k127_5571564_0	627192.SLG_34640	3.019e-141	460.0	COG2755@1|root,COG2755@2|Bacteria,1MXBN@1224|Proteobacteria,2U079@28211|Alphaproteobacteria,2K27U@204457|Sphingomonadales	204457|Sphingomonadales	E	GDSL-like Lipase/Acylhydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
DYD3_k127_5571564_2	95619.PM1_0208600	3.517e-96	322.0	COG1741@1|root,COG1741@2|Bacteria,1MVSW@1224|Proteobacteria,1RNVS@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Belongs to the pirin family	yhhW	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin
DYD3_k127_5571564_6	366602.Caul_2615	5.674e-11	72.0	2ECZR@1|root,336WR@2|Bacteria,1NBK6@1224|Proteobacteria,2UGZR@28211|Alphaproteobacteria,2KHCF@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5571564_5	1121949.AQXT01000002_gene1742	2.63e-38	157.0	COG0720@1|root,COG0720@2|Bacteria,1RJYR@1224|Proteobacteria,2UBK1@28211|Alphaproteobacteria,43YCH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	synthase	-	-	4.1.2.50,4.2.3.12	ko:K01737	ko00790,ko01100,map00790,map01100	M00842,M00843	R04286,R09959	RC01117,RC02846,RC02847	ko00000,ko00001,ko00002,ko01000,ko03016	-	-	-	PTPS
DYD3_k127_5571564_3	438753.AZC_1072	3.902e-96	319.0	COG0602@1|root,COG0602@2|Bacteria,1MUJ2@1224|Proteobacteria,2TU1S@28211|Alphaproteobacteria,3F0MX@335928|Xanthobacteraceae	28211|Alphaproteobacteria	H	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	queE	-	4.3.99.3	ko:K10026	ko00790,ko01100,map00790,map01100	-	R10002	RC02989	ko00000,ko00001,ko01000,ko03016	-	-	-	Fer4_14,Radical_SAM
DYD3_k127_55756_7	1286093.C266_25885	1.059e-25	117.0	2DRCH@1|root,33B7I@2|Bacteria,1NN9U@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_55756_2	1161401.ASJA01000009_gene1798	3.555e-68	243.0	COG4798@1|root,COG4798@2|Bacteria,1NNHX@1224|Proteobacteria,2U5HN@28211|Alphaproteobacteria,43XFZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_55756_6	349163.Acry_1620	2.48e-52	194.0	COG0639@1|root,COG0639@2|Bacteria,1N0V5@1224|Proteobacteria,2UDYW@28211|Alphaproteobacteria,2JWPT@204441|Rhodospirillales	204441|Rhodospirillales	T	Calcineurin-like phosphoesterase	-	-	3.1.3.16	ko:K01090	-	-	-	-	ko00000,ko01000	-	-	-	Metallophos
DYD3_k127_55756_8	1247963.JPHU01000014_gene960	1.906e-22	106.0	COG3152@1|root,COG3152@2|Bacteria,1NDNG@1224|Proteobacteria,2TT9F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF805)	-	-	-	-	-	-	-	-	-	-	-	-	DUF805
DYD3_k127_55756_9	411684.HPDFL43_06575	7.664e-07	57.0	COG3439@1|root,COG3439@2|Bacteria,1MZ38@1224|Proteobacteria,2UBVK@28211|Alphaproteobacteria,43MAN@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF302	ccrB	-	-	-	-	-	-	-	-	-	-	-	DUF302
DYD3_k127_55756_3	1479238.JQMZ01000001_gene2028	5.062e-66	246.0	COG4798@1|root,COG4798@2|Bacteria,1NNHX@1224|Proteobacteria,2U5HN@28211|Alphaproteobacteria,43XFZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_55756_0	1280950.HJO_16947	4.658e-118	399.0	COG0389@1|root,COG0389@2|Bacteria,1NTDH@1224|Proteobacteria,2UNYG@28211|Alphaproteobacteria,43ZIC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Domain of unknown function (DUF4332)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4332,Zn_dep_PLPC
DYD3_k127_55756_1	1041139.KB902579_gene4778	1.632e-82	291.0	COG3174@1|root,COG3174@2|Bacteria,1NDBI@1224|Proteobacteria,2U0C9@28211|Alphaproteobacteria,4B7I1@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4010)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4010,MgtC
DYD3_k127_55756_5	1121124.JNIX01000009_gene2667	1.566e-56	203.0	COG1611@1|root,COG1611@2|Bacteria,1RD59@1224|Proteobacteria,2U5DP@28211|Alphaproteobacteria,2KGET@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the LOG family	-	-	3.2.2.10	ko:K06966	ko00230,ko00240,map00230,map00240	-	R00182,R00510	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	Lysine_decarbox
DYD3_k127_55756_4	1122613.ATUP01000001_gene412	9.362e-65	230.0	COG1652@1|root,COG1652@2|Bacteria,1MWMR@1224|Proteobacteria,2U7UH@28211|Alphaproteobacteria,43YGZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein containing LysM domain	lysM	-	-	-	-	-	-	-	-	-	-	-	LysM
DYD3_k127_557785_3	1038858.AXBA01000062_gene2977	4.161e-37	148.0	COG4922@1|root,COG4922@2|Bacteria,1RDM5@1224|Proteobacteria,2UG54@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL,SnoaL_2
DYD3_k127_557785_0	1382303.JPOM01000001_gene342	2.433e-71	262.0	COG1215@1|root,COG1215@2|Bacteria,1RF3E@1224|Proteobacteria,2U6R0@28211|Alphaproteobacteria,2KJ5F@204458|Caulobacterales	204458|Caulobacterales	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_557785_1	876269.ARWA01000001_gene3594	6.886e-71	252.0	COG3832@1|root,COG3832@2|Bacteria,1N3W1@1224|Proteobacteria,2VFMP@28211|Alphaproteobacteria,3ND0M@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_557785_2	1122214.AQWH01000004_gene948	3.107e-49	177.0	COG0640@1|root,COG0640@2|Bacteria,1RH5P@1224|Proteobacteria,2U960@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator, ArsR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_5668219_3	247633.GP2143_17791	5.886e-73	256.0	28MSC@1|root,2ZB0S@2|Bacteria,1R8PG@1224|Proteobacteria,1SNXF@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5668219_6	551789.ATVJ01000001_gene1039	2.933e-36	142.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5668219_1	1280948.HY36_12505	2.293e-94	334.0	COG1506@1|root,COG1506@2|Bacteria,1R968@1224|Proteobacteria,2TXT1@28211|Alphaproteobacteria,43ZP6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Tannase and feruloyl esterase	-	-	-	-	-	-	-	-	-	-	-	-	Tannase
DYD3_k127_5668219_0	551275.KB899545_gene3046	2.441e-194	619.0	COG0366@1|root,COG0366@2|Bacteria,1MVKX@1224|Proteobacteria,2TRS3@28211|Alphaproteobacteria,43X1W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase family	aglA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.2.1.20	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	-	R00028,R00801,R00802,R06087,R06088	RC00028,RC00049,RC00077	ko00000,ko00001,ko01000	-	GH31	-	Alpha-amylase,DUF3459,Malt_amylase_C
DYD3_k127_5668219_2	247633.GP2143_17791	9.661e-74	259.0	28MSC@1|root,2ZB0S@2|Bacteria,1R8PG@1224|Proteobacteria,1SNXF@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5668219_8	136993.KB900627_gene391	2.215e-21	108.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5668219_7	1267005.KB911256_gene2046	3.556e-23	112.0	28X2W@1|root,2ZJ1E@2|Bacteria,1R92Z@1224|Proteobacteria,2TS5H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PcfJ
DYD3_k127_5668219_5	247633.GP2143_17796	3.117e-40	164.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,1ST6N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5668219_4	1472418.BBJC01000004_gene1788	1.642e-53	204.0	2CBAE@1|root,31814@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5675189_14	93220.LV28_16970	5.804e-62	222.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2VKEU@28216|Betaproteobacteria,1K2Y6@119060|Burkholderiaceae	28216|Betaproteobacteria	G	maleylacetoacetate isomerase	maiA	-	5.2.1.2,5.2.1.4	ko:K01800,ko:K01801	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R03181,R03868	RC00867	ko00000,ko00001,ko00002,ko01000	-	-	-	GST_C,GST_C_2,GST_C_3,GST_N,GST_N_3
DYD3_k127_5675189_3	1545915.JROG01000003_gene1665	3.154e-147	473.0	COG3186@1|root,COG3186@2|Bacteria,1MU29@1224|Proteobacteria,2TU1E@28211|Alphaproteobacteria,2K01F@204457|Sphingomonadales	204457|Sphingomonadales	E	Phenylalanine-4-hydroxylase	phhA	-	1.14.16.1	ko:K00500	ko00360,ko00400,ko00790,ko01100,ko01230,map00360,map00400,map00790,map01100,map01230	-	R01795,R07211	RC00490	ko00000,ko00001,ko01000	-	-	-	Biopterin_H
DYD3_k127_5675189_2	1479238.JQMZ01000001_gene1486	6.207e-176	561.0	COG0626@1|root,COG0626@2|Bacteria,1MU57@1224|Proteobacteria,2TW14@28211|Alphaproteobacteria,43WUN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	mdeA	-	2.5.1.48,4.4.1.11	ko:K01739,ko:K01761	ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017	R00654,R00999,R01288,R02508,R03217,R03260,R04770,R04944,R04945,R04946	RC00020,RC00056,RC00069,RC00196,RC00348,RC00420,RC01209,RC01210,RC02848,RC02866	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
DYD3_k127_5675189_13	1122613.ATUP01000001_gene343	2.548e-74	262.0	COG2885@1|root,COG3637@1|root,COG2885@2|Bacteria,COG3637@2|Bacteria,1N6EM@1224|Proteobacteria,2U17R@28211|Alphaproteobacteria,43WBD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA
DYD3_k127_5675189_1	394221.Mmar10_2488	2.061e-225	710.0	COG1109@1|root,COG1109@2|Bacteria,1MUA5@1224|Proteobacteria,2TRIJ@28211|Alphaproteobacteria,43W5C@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Phosphoglucomutase	algC	-	5.4.2.2,5.4.2.8	ko:K15778	ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	M00114	R00959,R01057,R01818,R08639	RC00408	ko00000,ko00001,ko00002,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
DYD3_k127_5675189_12	643473.KB235930_gene2529	9.442e-86	319.0	COG2303@1|root,COG2303@2|Bacteria,1G2DQ@1117|Cyanobacteria,1HQ1V@1161|Nostocales	1117|Cyanobacteria	E	PFAM GMC oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_5675189_11	1280950.HJO_10832	1.354e-89	306.0	COG0176@1|root,COG0176@2|Bacteria,1MWQ8@1224|Proteobacteria,2TQJB@28211|Alphaproteobacteria,43WH7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD3_k127_5675189_0	69279.BG36_00970	7.841e-256	805.0	COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,2TQUX@28211|Alphaproteobacteria,43J2N@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	G	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate	tktA	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C,Transketolase_N
DYD3_k127_5675189_5	1161401.ASJA01000017_gene1280	1.075e-124	407.0	COG1210@1|root,COG1210@2|Bacteria,1MV5F@1224|Proteobacteria,2TRT6@28211|Alphaproteobacteria,43X4K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	UTP-glucose-1-phosphate uridylyltransferase	galU	-	2.7.7.9	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	M00129,M00361,M00362,M00549	R00289	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
DYD3_k127_5675189_10	1382303.JPOM01000001_gene1974	8.831e-90	307.0	COG1216@1|root,COG1216@2|Bacteria,1R6SJ@1224|Proteobacteria,2U47V@28211|Alphaproteobacteria,2KFG0@204458|Caulobacterales	204458|Caulobacterales	M	PFAM Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_5675189_19	1280953.HOC_11158	3.925e-06	57.0	2BKPV@1|root,32F5J@2|Bacteria,1Q6GK@1224|Proteobacteria,2V6VU@28211|Alphaproteobacteria,43YCF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5675189_7	745310.G432_07445	1.167e-122	404.0	COG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,2TSIP@28211|Alphaproteobacteria,2K0VH@204457|Sphingomonadales	204457|Sphingomonadales	M	epimerase dehydratase	-	-	5.1.3.6	ko:K08679	ko00520,ko01100,map00520,map01100	-	R01385	RC00289	ko00000,ko00001,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_5675189_15	1144313.PMI10_00333	3.427e-34	142.0	COG1216@1|root,COG1216@2|Bacteria,4NIW6@976|Bacteroidetes,1IK7C@117743|Flavobacteriia	976|Bacteroidetes	S	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_5675189_18	1127673.GLIP_0722	4.854e-19	102.0	COG1215@1|root,COG1215@2|Bacteria,1R057@1224|Proteobacteria,1T4SK@1236|Gammaproteobacteria,46817@72275|Alteromonadaceae	1236|Gammaproteobacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5675189_9	1479239.JQMU01000001_gene1371	1.184e-92	325.0	COG0463@1|root,COG1215@1|root,COG0463@2|Bacteria,COG1215@2|Bacteria,1QVTJ@1224|Proteobacteria,2TXTU@28211|Alphaproteobacteria,2K9QZ@204457|Sphingomonadales	204457|Sphingomonadales	M	COG0463 Glycosyltransferases involved in cell wall biogenesis	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_1,Glycos_transf_2
DYD3_k127_5675189_4	766499.C357_10462	7.59e-131	447.0	COG0463@1|root,COG1215@1|root,COG0463@2|Bacteria,COG1215@2|Bacteria,1REYM@1224|Proteobacteria,2U8P5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Glycosyl transferase, family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_10
DYD3_k127_5675189_17	1123053.AUDG01000005_gene3973	6.037e-25	117.0	COG1216@1|root,COG1216@2|Bacteria,1RKNF@1224|Proteobacteria,1T42P@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5675189_16	766499.C357_21367	9.714e-31	134.0	COG1196@1|root,COG1196@2|Bacteria,1RAVP@1224|Proteobacteria,2UHJZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	nuclear chromosome segregation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5675189_8	1117647.M5M_02640	9.376e-97	337.0	COG0457@1|root,COG0457@2|Bacteria,1RCUA@1224|Proteobacteria,1SERK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
DYD3_k127_5675189_6	314256.OG2516_18965	1.66e-123	419.0	2FEPR@1|root,346NZ@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Exostosin
DYD3_k127_5678127_7	1122613.ATUP01000001_gene730	1.893e-48	182.0	COG3380@1|root,COG3380@2|Bacteria,1R5C0@1224|Proteobacteria,2U3PZ@28211|Alphaproteobacteria,43Y4R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Flavin containing amine oxidoreductase	-	-	-	ko:K06955	-	-	-	-	ko00000	-	-	-	Amino_oxidase,NAD_binding_8
DYD3_k127_5678127_6	856793.MICA_461	2.374e-49	178.0	COG3169@1|root,COG3169@2|Bacteria,1RHBQ@1224|Proteobacteria,2U9M1@28211|Alphaproteobacteria,4BS9M@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Putative member of DMT superfamily (DUF486)	-	-	-	ko:K09922	-	-	-	-	ko00000	-	-	-	DMT_6
DYD3_k127_5678127_2	394221.Mmar10_0519	7.102e-156	504.0	COG0534@1|root,COG0534@2|Bacteria,1MV6B@1224|Proteobacteria,2TSKZ@28211|Alphaproteobacteria,43WD2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG0534 Na -driven multidrug efflux pump	dinF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
DYD3_k127_5678127_3	1380394.JADL01000003_gene4779	2.648e-110	368.0	COG0167@1|root,COG0167@2|Bacteria,1MU7C@1224|Proteobacteria,2TRF8@28211|Alphaproteobacteria,2JPD2@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor	pyrD	-	1.3.5.2	ko:K00254	ko00240,ko01100,map00240,map01100	M00051	R01868	RC00051	ko00000,ko00001,ko00002,ko01000	-	-	-	DHO_dh
DYD3_k127_5678127_10	1247963.JPHU01000003_gene1488	3.407e-26	111.0	COG3502@1|root,COG3502@2|Bacteria	2|Bacteria	S	Protein of unknown function (DUF952)	MA20_22095	-	-	ko:K12979	-	-	-	-	ko00000,ko01000,ko01005	-	-	-	DUF952
DYD3_k127_5678127_4	314254.OA2633_06244	7.126e-85	286.0	COG2932@1|root,COG2932@2|Bacteria,1MXWS@1224|Proteobacteria,2TQJE@28211|Alphaproteobacteria,43WWE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	S24 family peptidase	c1	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S24
DYD3_k127_5678127_1	1088721.NSU_2854	1.374e-190	612.0	COG0471@1|root,COG0490@1|root,COG0471@2|Bacteria,COG0490@2|Bacteria,1MU0K@1224|Proteobacteria,2TSFS@28211|Alphaproteobacteria,2K1E7@204457|Sphingomonadales	204457|Sphingomonadales	P	Citrate transporter	-	-	-	-	-	-	-	-	-	-	-	-	CitMHS,Na_sulph_symp,TrkA_C
DYD3_k127_5678127_11	1121438.JNJA01000001_gene2560	7.358e-05	55.0	COG0785@1|root,COG2319@1|root,COG0785@2|Bacteria,COG2319@2|Bacteria	2|Bacteria	S	anaphase-promoting complex binding	mauF	-	2.7.11.1	ko:K03466,ko:K06196,ko:K12132	-	-	-	-	ko00000,ko01000,ko01001,ko02000,ko03036	3.A.12,5.A.1.2	-	-	AAA_16,Trans_reg_C,WD40
DYD3_k127_5678127_0	985054.JQEZ01000005_gene219	2.706e-269	842.0	COG1217@1|root,COG1217@2|Bacteria,1MV5Q@1224|Proteobacteria,2TR63@28211|Alphaproteobacteria,4NB2T@97050|Ruegeria	28211|Alphaproteobacteria	T	GTP-binding protein TypA	typA	GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840	-	ko:K06207	-	-	-	-	ko00000	-	-	-	EFG_C,GTP_EFTU,GTP_EFTU_D2
DYD3_k127_5678127_9	78245.Xaut_2244	1.519e-28	123.0	COG1360@1|root,COG1525@1|root,COG1360@2|Bacteria,COG1525@2|Bacteria,1QUS6@1224|Proteobacteria,2TW5C@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	nuclease	-	-	-	-	-	-	-	-	-	-	-	-	OmpA
DYD3_k127_5678127_5	1449049.JONW01000012_gene13	1.148e-54	195.0	COG1671@1|root,COG1671@2|Bacteria,1RCZA@1224|Proteobacteria,2U997@28211|Alphaproteobacteria,2KGN3@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the UPF0178 family	-	-	-	ko:K09768	-	-	-	-	ko00000	-	-	-	DUF188
DYD3_k127_5678127_8	1382303.JPOM01000001_gene653	1.146e-37	149.0	COG0216@1|root,COG0216@2|Bacteria,1R348@1224|Proteobacteria,2TZXT@28211|Alphaproteobacteria,2KJX7@204458|Caulobacterales	204458|Caulobacterales	J	RF-1 domain	-	-	-	-	-	-	-	-	-	-	-	-	RF-1
DYD3_k127_5687142_4	1122613.ATUP01000001_gene844	1.73e-79	286.0	COG0825@1|root,COG0825@2|Bacteria,1MURN@1224|Proteobacteria,2TR6V@28211|Alphaproteobacteria,43WUS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	accA	-	2.1.3.15,6.4.1.2	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	ACCA
DYD3_k127_5687142_2	394221.Mmar10_2271	7.525e-95	323.0	COG4974@1|root,COG4974@2|Bacteria,1MVNF@1224|Proteobacteria,2TRAA@28211|Alphaproteobacteria,43WCW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Belongs to the 'phage' integrase family. XerC subfamily	xerD	-	-	ko:K04763	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD3_k127_5687142_9	1112216.JH594425_gene2897	5.963e-25	113.0	2E48M@1|root,32Z4G@2|Bacteria,1N6NZ@1224|Proteobacteria,2UH8Q@28211|Alphaproteobacteria,2K7KB@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5687142_7	1161401.ASJA01000004_gene2199	4.094e-32	144.0	2DM5F@1|root,31SZR@2|Bacteria,1RHVG@1224|Proteobacteria,2UBG1@28211|Alphaproteobacteria,43YIP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5687142_5	402881.Plav_1718	2.489e-61	216.0	COG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,2U76C@28211|Alphaproteobacteria,1JNXT@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate	aroK	GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615	2.7.1.71	ko:K00891	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	SKI
DYD3_k127_5687142_3	570952.ATVH01000015_gene1312	1.165e-90	338.0	COG0337@1|root,COG0337@2|Bacteria,1MUBK@1224|Proteobacteria,2TRDA@28211|Alphaproteobacteria,2JP8I@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)	aroB	-	2.7.1.71,4.2.3.4	ko:K01735,ko:K13829	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412,R03083	RC00002,RC00078,RC00847	ko00000,ko00001,ko00002,ko01000	-	-	-	DHQ_synthase,SKI
DYD3_k127_5687142_0	1161401.ASJA01000004_gene2203	7.818e-164	529.0	COG4536@1|root,COG4536@2|Bacteria,1NZ99@1224|Proteobacteria,2TVZH@28211|Alphaproteobacteria,43WNT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	CBS transporter associated domain-containing protein	corB	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03699	-	-	-	-	ko00000,ko02042	-	-	-	CBS,CorC_HlyC,DUF21
DYD3_k127_5687142_1	1267005.KB911257_gene692	1.552e-97	347.0	COG0644@1|root,COG0644@2|Bacteria,1Q5UG@1224|Proteobacteria,2UQI2@28211|Alphaproteobacteria,3N843@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5687142_8	1123503.KB908058_gene1067	1.945e-30	127.0	COG0784@1|root,COG0784@2|Bacteria,1N0NS@1224|Proteobacteria,2TV2S@28211|Alphaproteobacteria,2KGN1@204458|Caulobacterales	204458|Caulobacterales	T	chemotaxis protein	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_5687142_6	1479238.JQMZ01000001_gene2283	1.832e-39	154.0	COG3380@1|root,COG3380@2|Bacteria,1R5C0@1224|Proteobacteria,2U3PZ@28211|Alphaproteobacteria,43Y4R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Flavin containing amine oxidoreductase	-	-	-	ko:K06955	-	-	-	-	ko00000	-	-	-	Amino_oxidase,NAD_binding_8
DYD3_k127_56936_1	1479238.JQMZ01000001_gene1831	2.428e-49	179.0	COG1974@1|root,COG1974@2|Bacteria,1MW80@1224|Proteobacteria,2TT7W@28211|Alphaproteobacteria,43WYC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	lexA	GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141	3.4.21.88	ko:K01356	-	M00729	-	-	ko00000,ko00002,ko01000,ko01002,ko03400	-	-	-	LexA_DNA_bind,Peptidase_S24
DYD3_k127_56936_0	32057.KB217483_gene9483	5.472e-86	296.0	COG0265@1|root,COG0265@2|Bacteria,1G3M4@1117|Cyanobacteria,1HQRD@1161|Nostocales	1117|Cyanobacteria	O	Domain present in PSD-95, Dlg, and ZO-1/2.	-	-	-	-	-	-	-	-	-	-	-	-	PDZ_2,Trypsin_2
DYD3_k127_56936_2	670292.JH26_10020	6.475e-26	107.0	COG2801@1|root,COG2801@2|Bacteria,1MWNX@1224|Proteobacteria,2TZ7M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	LZ_Tnp_IS481,rve,rve_3
DYD3_k127_5702361_4	1161401.ASJA01000021_gene662	3.456e-59	214.0	COG0664@1|root,COG0664@2|Bacteria,1QU34@1224|Proteobacteria,2TVH6@28211|Alphaproteobacteria,43XF6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG1226 Kef-type K transport systems	-	-	-	ko:K10716	-	-	-	-	ko00000,ko02000	1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6	-	-	Ion_trans
DYD3_k127_5702361_0	1161401.ASJA01000013_gene779	2.739e-296	929.0	COG0072@1|root,COG0073@1|root,COG0072@2|Bacteria,COG0073@2|Bacteria,1MWKS@1224|Proteobacteria,2TQV8@28211|Alphaproteobacteria,43X95@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	pheT	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	B3_4,B5,FDX-ACB,tRNA_bind
DYD3_k127_5702361_7	1460635.JCM19038_2138	8.224e-19	92.0	COG0454@1|root,COG0456@2|Bacteria,1VAKJ@1239|Firmicutes,4HKQM@91061|Bacilli	91061|Bacilli	K	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_5702361_1	394221.Mmar10_0130	1.746e-176	559.0	COG0016@1|root,COG0016@2|Bacteria,1MVD7@1224|Proteobacteria,2TS2T@28211|Alphaproteobacteria,43X12@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily	pheS	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.20	ko:K01889	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Phe_tRNA-synt_N,tRNA-synt_2d
DYD3_k127_5702361_3	1429916.X566_04785	9.365e-72	247.0	COG3576@1|root,COG3576@2|Bacteria,1NBWC@1224|Proteobacteria,2U6NS@28211|Alphaproteobacteria,3JZR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pyridoxamine 5'-phosphate oxidase	-	-	-	ko:K07006	-	-	-	-	ko00000	-	-	-	AHSA1,Putative_PNPOx
DYD3_k127_5702361_5	1535287.JP74_20300	3.107e-49	177.0	COG0292@1|root,COG0292@2|Bacteria,1RGU2@1224|Proteobacteria,2U756@28211|Alphaproteobacteria,3N6XI@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	J	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	rplT	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0065003,GO:0070925,GO:0071826,GO:0071840	-	ko:K02887	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L20
DYD3_k127_5702361_6	266809.PM03_01235	1.278e-23	101.0	COG0291@1|root,COG0291@2|Bacteria,1N6V4@1224|Proteobacteria,2UF6K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL35 family	rpmI	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02916	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L35p
DYD3_k127_5702361_2	1248916.ANFY01000004_gene1861	1.998e-83	281.0	COG0500@1|root,COG2226@2|Bacteria,1MXP4@1224|Proteobacteria,2TQU4@28211|Alphaproteobacteria,2KCTI@204457|Sphingomonadales	204457|Sphingomonadales	Q	Mycolic acid cyclopropane synthetase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_5721111_7	1411123.JQNH01000001_gene1167	2.419e-05	46.0	COG3293@1|root,COG3293@2|Bacteria,1P5HD@1224|Proteobacteria,2TUQI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Transposase and inactivated	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2,DUF4096
DYD3_k127_5721111_6	1120983.KB894574_gene843	1.428e-20	95.0	COG0789@1|root,COG0789@2|Bacteria,1Q6QY@1224|Proteobacteria,2VCTP@28211|Alphaproteobacteria,1JQF1@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	MerR HTH family regulatory protein	-	-	-	ko:K18997	-	-	-	-	ko00000,ko03036	-	-	-	MerR_2
DYD3_k127_5721111_5	1120983.KB894574_gene842	4.176e-121	395.0	COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,2TR01@28211|Alphaproteobacteria,1JNK4@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	DnaJ C terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	DnaJ,DnaJ_C
DYD3_k127_5721111_1	1122135.KB893171_gene2144	1.698e-213	673.0	COG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,2TQMA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	oxidase subunit	cydA	-	1.10.3.14	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_I
DYD3_k127_5721111_3	1280948.HY36_17395	9.312e-147	471.0	COG1294@1|root,COG1294@2|Bacteria,1MURP@1224|Proteobacteria,2TU3I@28211|Alphaproteobacteria,43W5P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG1294 Cytochrome bd-type quinol oxidase, subunit 2	cydB	-	1.10.3.14	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_II
DYD3_k127_5721111_0	582402.Hbal_2484	1.522e-275	874.0	COG1629@1|root,COG4771@2|Bacteria,1MVFB@1224|Proteobacteria,2U2UJ@28211|Alphaproteobacteria,43WVS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_5721111_2	394221.Mmar10_1051	1.727e-161	525.0	COG0457@1|root,COG0457@2|Bacteria,1MVMG@1224|Proteobacteria,2TSGE@28211|Alphaproteobacteria,43WYA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_3,TPR_16,TPR_2,TPR_8
DYD3_k127_5721111_4	1265313.HRUBRA_02368	4.256e-127	418.0	COG1228@1|root,COG1228@2|Bacteria,1MVAF@1224|Proteobacteria,1RQRP@1236|Gammaproteobacteria,1J8WE@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	Q	COG1228 Imidazolonepropionase and related amidohydrolases	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1
DYD3_k127_5734510_26	754035.Mesau_01057	5.098e-25	112.0	COG0454@1|root,COG0456@2|Bacteria,1N64F@1224|Proteobacteria,2UDC3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	2.3.1.82	ko:K18816	-	-	-	-	br01600,ko00000,ko01000,ko01504	-	-	-	Acetyltransf_1
DYD3_k127_5734510_25	926566.Terro_0915	2.751e-36	147.0	2CGTC@1|root,331SF@2|Bacteria,3Y7P6@57723|Acidobacteria,2JMRK@204432|Acidobacteriia	204432|Acidobacteriia	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_5734510_28	314231.FP2506_18669	2.2e-21	99.0	2E9WT@1|root,3342I@2|Bacteria,1NBEH@1224|Proteobacteria,2UFGC@28211|Alphaproteobacteria,2PM4Q@255475|Aurantimonadaceae	28211|Alphaproteobacteria	S	Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)	MA20_00895	-	-	-	-	-	-	-	-	-	-	-	PHA_gran_rgn
DYD3_k127_5734510_15	1168065.DOK_12286	3.898e-103	340.0	COG0684@1|root,COG0684@2|Bacteria,1MW9P@1224|Proteobacteria,1RNV3@1236|Gammaproteobacteria,1J8VD@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	H	COG0684 Demethylmenaquinone methyltransferase	fldZ	-	4.1.3.17	ko:K10218	ko00362,ko00660,ko01120,map00362,map00660,map01120	-	R00008,R00350	RC00067,RC00502,RC01205	ko00000,ko00001,ko01000	-	-	-	RraA-like
DYD3_k127_5734510_6	1168065.DOK_12291	2.871e-153	492.0	COG2828@1|root,COG2828@2|Bacteria,1MXVV@1224|Proteobacteria,1RNE6@1236|Gammaproteobacteria,1J5BN@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	protein conserved in bacteria	galD	GO:0003674,GO:0003824,GO:0006082,GO:0006725,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016853,GO:0016860,GO:0016863,GO:0017144,GO:0018918,GO:0018958,GO:0019336,GO:0019396,GO:0019439,GO:0019752,GO:0032787,GO:0042537,GO:0042737,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0071704,GO:0072329,GO:1901360,GO:1901361,GO:1901575,GO:1901615,GO:1901616	5.3.2.8	ko:K16514	ko00362,ko01120,map00362,map01120	-	R07839	RC02426	ko00000,ko00001,ko01000	-	-	-	PrpF
DYD3_k127_5734510_7	1280941.HY2_09125	2.954e-149	479.0	COG5397@1|root,COG5397@2|Bacteria,1PJM3@1224|Proteobacteria,2U1M6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Nucleotidyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	NTP_transf_8
DYD3_k127_5734510_31	1122218.KB893654_gene1889	1.468e-16	83.0	28THJ@1|root,2ZFRF@2|Bacteria,1P8EQ@1224|Proteobacteria,2UWRS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5734510_9	1054213.HMPREF9946_00016	4.546e-138	446.0	COG0136@1|root,COG0136@2|Bacteria,1MUHG@1224|Proteobacteria,2TSRD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	asd	-	1.2.1.11	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R02291	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh,Semialdhyde_dhC
DYD3_k127_5734510_17	1121022.ABENE_11255	6.55e-81	283.0	COG2084@1|root,COG2084@2|Bacteria,1MX8V@1224|Proteobacteria,2TVBS@28211|Alphaproteobacteria,2KIQV@204458|Caulobacterales	204458|Caulobacterales	I	Domain of unknown function (DUF1932)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1932,NAD_binding_2
DYD3_k127_5734510_2	1168065.DOK_12301	3.686e-190	597.0	COG2159@1|root,COG2159@2|Bacteria,1MVHB@1224|Proteobacteria,1RMYJ@1236|Gammaproteobacteria,1J9DQ@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	metal-dependent hydrolase of the TIM-barrel fold	fldW	-	4.1.1.45,4.2.1.83	ko:K03392,ko:K10220	ko00362,ko00380,ko01100,ko01120,map00362,map00380,map01100,map01120	M00038	R04323,R04478	RC00498,RC00779	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_2
DYD3_k127_5734510_4	1168065.DOK_12306	1.293e-159	522.0	COG3618@1|root,COG3618@2|Bacteria,1N2QM@1224|Proteobacteria,1RQ8V@1236|Gammaproteobacteria,1J5VK@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	metal-dependent hydrolase of the TIM-barrel fold	-	-	3.1.1.57	ko:K10221	ko00362,ko00627,ko01120,map00362,map00627,map01120	-	R04277	RC03110	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
DYD3_k127_5734510_20	1158292.JPOE01000005_gene199	2.084e-58	205.0	COG3384@1|root,COG3384@2|Bacteria,1RA8A@1224|Proteobacteria,2VQ2B@28216|Betaproteobacteria,1KKQH@119065|unclassified Burkholderiales	28216|Betaproteobacteria	S	Aromatic-ring-opening dioxygenase LigAB, LigA subunit	-	-	1.13.11.8	ko:K04100	ko00362,ko00624,ko00627,ko01120,map00362,map00624,map00627,map01120	-	R01632,R03550,R04280,R09565	RC00233,RC00387,RC00535,RC02567,RC02694	br01602,ko00000,ko00001,ko01000	-	-	-	LigA
DYD3_k127_5734510_10	1282360.ABAC460_20405	9.705e-133	436.0	COG3384@1|root,COG3384@2|Bacteria,1MW77@1224|Proteobacteria,2TRP1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols	ligB	-	1.13.11.8	ko:K04101	ko00362,ko00624,ko00627,ko01120,map00362,map00624,map00627,map01120	-	R01632,R03550,R04280,R09565	RC00233,RC00387,RC00535,RC02567,RC02694	br01602,ko00000,ko00001,ko01000	-	-	-	LigB
DYD3_k127_5734510_13	450851.PHZ_c1163	3.255e-106	369.0	COG0642@1|root,COG0784@1|root,COG2202@1|root,COG2203@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TWFB@28211|Alphaproteobacteria,2KFH9@204458|Caulobacterales	204458|Caulobacterales	T	histidine kinase A domain protein	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_3,Response_reg
DYD3_k127_5734510_27	1267005.KB911262_gene3316	2.621e-22	106.0	COG1917@1|root,COG1917@2|Bacteria,1N0G1@1224|Proteobacteria,2UGDT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	conserved protein, contains double-stranded beta-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_5734510_23	627192.SLG_25140	2.418e-49	190.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5734510_22	285514.JNWO01000006_gene1669	5.344e-54	197.0	COG1309@1|root,COG1309@2|Bacteria,2GPBQ@201174|Actinobacteria	201174|Actinobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_5734510_8	105559.Nwat_0066	6.26e-143	463.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,1RRWV@1236|Gammaproteobacteria,1X18G@135613|Chromatiales	135613|Chromatiales	C	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
DYD3_k127_5734510_3	1168065.DOK_12321	6.92e-164	527.0	COG0673@1|root,COG0673@2|Bacteria,1MXUP@1224|Proteobacteria,1RP9K@1236|Gammaproteobacteria,1J9Q9@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	dehydrogenases and related proteins	-	-	1.1.1.312	ko:K10219	ko00350,ko00362,ko00627,ko01120,ko01220,map00350,map00362,map00627,map01120,map01220	M00533	R04278,R04279,R04418,R04419	RC00251,RC00254	ko00000,ko00001,ko00002,ko01000	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_5734510_18	631362.Thi970DRAFT_01658	4.556e-62	226.0	COG1028@1|root,COG1028@2|Bacteria,1MW4W@1224|Proteobacteria,1RRSA@1236|Gammaproteobacteria,1WXS6@135613|Chromatiales	135613|Chromatiales	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_5734510_30	627192.SLG_26310	5.26e-17	89.0	COG3631@1|root,COG3631@2|Bacteria,1NI1R@1224|Proteobacteria	1224|Proteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_5734510_21	716928.AJQT01000011_gene5085	5.28e-55	204.0	COG2304@1|root,COG2304@2|Bacteria,1PH4N@1224|Proteobacteria,2TQTJ@28211|Alphaproteobacteria,4BB4P@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1194)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1194
DYD3_k127_5734510_1	1336243.JAEA01000005_gene1391	8.824e-237	760.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TR3X@28211|Alphaproteobacteria,1JR5E@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	ABC transporter related	uup	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363	-	ko:K15738	-	-	-	-	ko00000,ko02000	3.A.1.120.6	-	-	ABC_tran,ABC_tran_CTD
DYD3_k127_5734510_16	1116369.KB890024_gene3829	7.72e-92	314.0	COG1853@1|root,COG1853@2|Bacteria,1NB1B@1224|Proteobacteria,2U5NM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	flavin reductase	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
DYD3_k127_5734510_11	365046.Rta_24740	1.979e-122	406.0	COG0667@1|root,COG0667@2|Bacteria,1MVEH@1224|Proteobacteria,2VH1Q@28216|Betaproteobacteria,4AA26@80864|Comamonadaceae	28216|Betaproteobacteria	C	aldo keto reductase	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD3_k127_5734510_12	311402.Avi_5950	1.665e-120	407.0	COG3670@1|root,COG3670@2|Bacteria,1MY1X@1224|Proteobacteria,2VCNC@28211|Alphaproteobacteria,4BJVX@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	Retinal pigment epithelial membrane protein	-	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_5734510_0	1346791.M529_19040	7.96e-249	785.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1,1.17.2.2	ko:K17760,ko:K21676	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_5734510_5	1247963.JPHU01000006_gene100	2.138e-159	517.0	COG1760@1|root,COG1760@2|Bacteria,1MUZN@1224|Proteobacteria,2TR3D@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG1760 L-serine deaminase	sdaA	-	4.3.1.17	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	-	R00220,R00590	RC00331,RC02600	ko00000,ko00001,ko01000	-	-	-	SDH_alpha,SDH_beta
DYD3_k127_5734510_29	551275.KB899544_gene1817	1.511e-17	96.0	2C2F6@1|root,33EKZ@2|Bacteria,1NJB4@1224|Proteobacteria,2UV77@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5734510_14	551275.KB899544_gene1818	4.26e-104	363.0	2FHHP@1|root,349BQ@2|Bacteria,1P1X7@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5734510_34	1289387.AUKW01000008_gene4623	3.668e-07	63.0	COG3023@1|root,COG3023@2|Bacteria,2GJ9M@201174|Actinobacteria	201174|Actinobacteria	V	Negative regulator of	-	-	-	-	-	-	-	-	-	-	-	-	Amidase_2
DYD3_k127_5734510_24	1097668.BYI23_B013220	7.835e-43	173.0	COG3409@1|root,COG3409@2|Bacteria,1RAYU@1224|Proteobacteria,2VPG4@28216|Betaproteobacteria,1K3UH@119060|Burkholderiaceae	28216|Betaproteobacteria	M	Pfam:DUF3380	-	-	-	-	-	-	-	-	-	-	-	-	Muraidase,PG_binding_1
DYD3_k127_5806060_9	1449076.JOOE01000002_gene732	1.566e-61	218.0	2AJJI@1|root,31A6C@2|Bacteria,1NVP8@1224|Proteobacteria,2US22@28211|Alphaproteobacteria,2K74K@204457|Sphingomonadales	204457|Sphingomonadales	S	Protein of unknown function (DUF3237)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3237
DYD3_k127_5806060_0	1449076.JOOE01000002_gene731	3.307e-241	767.0	COG2936@1|root,COG2936@2|Bacteria,1MVA8@1224|Proteobacteria,2TU0R@28211|Alphaproteobacteria,2K3TT@204457|Sphingomonadales	204457|Sphingomonadales	S	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain	-	-	-	ko:K06978	-	-	-	-	ko00000	-	-	-	PepX_C,Peptidase_S15
DYD3_k127_5806060_8	627192.SLG_09370	2.139e-72	247.0	2AH49@1|root,317DT@2|Bacteria,1NV02@1224|Proteobacteria,2URS1@28211|Alphaproteobacteria,2KDC8@204457|Sphingomonadales	204457|Sphingomonadales	S	Protein of unknown function (DUF3237)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3237
DYD3_k127_5806060_21	555793.WSK_3231	2.376e-11	75.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_12	1088721.NSU_2830	2.247e-25	111.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria,2KE0P@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_13	555793.WSK_3236	4.65e-24	108.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria,2KBI7@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_14	1088721.NSU_2830	2.668e-23	109.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria,2KE0P@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_15	555793.WSK_3236	3.951e-23	105.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria,2KBI7@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_17	555793.WSK_3236	3.041e-21	101.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria,2KBI7@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_10	627192.SLG_09880	1.395e-47	183.0	28MSC@1|root,2ZB0S@2|Bacteria,1NG2A@1224|Proteobacteria,2VG0A@28211|Alphaproteobacteria,2KBBC@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_11	589873.EP13_13635	3.858e-28	119.0	2CBAE@1|root,32YK1@2|Bacteria,1N7NP@1224|Proteobacteria,1SGTK@1236|Gammaproteobacteria,46BXU@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_16	589873.EP13_13630	1.599e-21	100.0	2CBAE@1|root,31814@2|Bacteria,1R3F3@1224|Proteobacteria,1T675@1236|Gammaproteobacteria,46DFK@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_20	247633.GP2143_17801	9.422e-13	74.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_19	639030.JHVA01000001_gene1884	1.167e-18	99.0	28MSC@1|root,2ZB0S@2|Bacteria,3Y8PH@57723|Acidobacteria	57723|Acidobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_18	627192.SLG_09880	4.263e-20	100.0	28MSC@1|root,2ZB0S@2|Bacteria,1NG2A@1224|Proteobacteria,2VG0A@28211|Alphaproteobacteria,2KBBC@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5806060_2	1122612.AUBA01000002_gene1698	1.771e-132	433.0	COG0620@1|root,COG0620@2|Bacteria,1MUI9@1224|Proteobacteria,2TTWK@28211|Alphaproteobacteria,2K0DU@204457|Sphingomonadales	204457|Sphingomonadales	E	Methionine synthase	-	-	2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	Meth_synt_2
DYD3_k127_5806060_1	316058.RPB_3583	2.542e-169	539.0	COG0654@1|root,COG0654@2|Bacteria,1MV8T@1224|Proteobacteria,2TRB8@28211|Alphaproteobacteria,3JSNQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	pobA	GO:0000166,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016705,GO:0016709,GO:0018659,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363	1.14.13.2	ko:K00481	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R01298	RC00046	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
DYD3_k127_5806060_4	1267534.KB906760_gene1427	2.079e-109	373.0	COG1506@1|root,COG1506@2|Bacteria	2|Bacteria	E	serine-type peptidase activity	-	-	-	-	-	-	-	-	-	-	-	-	Tannase
DYD3_k127_5806060_7	366602.Caul_3845	3.648e-78	273.0	COG2207@1|root,COG2207@2|Bacteria,1MXDJ@1224|Proteobacteria,2TSY6@28211|Alphaproteobacteria,2KIRE@204458|Caulobacterales	204458|Caulobacterales	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K18954	-	-	-	-	ko00000,ko03000	-	-	-	AraC_binding,HTH_18
DYD3_k127_5806060_5	551789.ATVJ01000001_gene1474	2.905e-100	336.0	COG0657@1|root,COG0657@2|Bacteria	2|Bacteria	I	acetylesterase activity	-	-	3.1.1.3	ko:K01046	ko00561,ko01100,map00561,map01100	M00098	R02250,R02687	RC00020,RC00037,RC00041,RC00094	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_3,Peptidase_S9
DYD3_k127_5806060_3	1500304.JQKY01000022_gene2850	1.458e-117	386.0	COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2TSM8@28211|Alphaproteobacteria,4B80B@82115|Rhizobiaceae	28211|Alphaproteobacteria	CH	D-isomer specific 2-hydroxyacid dehydrogenase	gyaR2	-	1.1.1.215,1.1.1.26,1.1.1.79,1.1.1.81	ko:K00015,ko:K00050,ko:K00090	ko00030,ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00030,map00260,map00620,map00630,map01100,map01110,map01120	-	R00465,R00717,R01388,R01392,R01739	RC00031,RC00042,RC00084	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_5806060_6	1449049.JONW01000012_gene180	4.496e-83	296.0	COG4240@1|root,COG4240@2|Bacteria,1QUTA@1224|Proteobacteria,2U4WP@28211|Alphaproteobacteria,2KG9T@204458|Caulobacterales	204458|Caulobacterales	S	COG4240 Predicted kinase	-	-	2.7.1.31	ko:K15918	ko00260,ko00561,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00561,map00630,map01100,map01110,map01130,map01200	M00532	R01514	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	ArgK
DYD3_k127_5823569_7	685778.AORL01000019_gene1725	1.718e-59	216.0	COG0836@1|root,COG0836@2|Bacteria,1MV39@1224|Proteobacteria,2TT0R@28211|Alphaproteobacteria,2K066@204457|Sphingomonadales	204457|Sphingomonadales	M	Mannose-1-phosphate guanylyltransferase	-	-	2.7.7.13	ko:K00971	ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110	M00114,M00361,M00362	R00885	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	MannoseP_isomer,NTP_transferase
DYD3_k127_5823569_5	1282360.ABAC460_14155	1.207e-82	284.0	COG1218@1|root,COG1218@2|Bacteria,1N0GY@1224|Proteobacteria,2TT7B@28211|Alphaproteobacteria,2KGGX@204458|Caulobacterales	204458|Caulobacterales	P	nucleotidase	cysQ	-	3.1.3.7	ko:K01082	ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130	-	R00188,R00508	RC00078	ko00000,ko00001,ko01000,ko03016	-	-	-	Inositol_P
DYD3_k127_5823569_4	472175.EL18_01587	1.491e-113	379.0	COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,2TR8K@28211|Alphaproteobacteria,43HWU@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	M	Cyclopropane-fatty-acyl-phospholipid synthase	-	-	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	CMAS
DYD3_k127_5823569_6	1449065.JMLL01000010_gene882	5.86e-66	229.0	COG1898@1|root,COG1898@2|Bacteria,1RDAB@1224|Proteobacteria,2U99D@28211|Alphaproteobacteria,43PVP@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	M	dTDP-4-dehydrorhamnose 3,5-epimerase	rfbC	GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008830,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509	5.1.3.13	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R06514	RC01531	ko00000,ko00001,ko00002,ko01000	-	-	-	dTDP_sugar_isom
DYD3_k127_5823569_1	398525.KB900701_gene7522	1.803e-186	592.0	COG4310@1|root,COG4310@2|Bacteria,1NDWT@1224|Proteobacteria,2TTYP@28211|Alphaproteobacteria,3JX5M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	winged helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	DUF2172,DUF4910,HTH_47,Peptidase_M28
DYD3_k127_5823569_2	398525.KB900701_gene7523	4.896e-156	499.0	COG0451@1|root,COG0451@2|Bacteria,1PB4Y@1224|Proteobacteria,2TTV7@28211|Alphaproteobacteria,3JWIV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	3-beta hydroxysteroid dehydrogenase/isomerase family	-	-	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
DYD3_k127_5823569_3	1280954.HPO_02587	1.121e-120	394.0	COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,2TR81@28211|Alphaproteobacteria,43WZ3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	argF	-	2.1.3.3,2.1.3.9	ko:K00611,ko:K09065	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	M00029,M00844,M00845	R01398,R07245	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	OTCace,OTCace_N
DYD3_k127_5823569_0	1267005.KB911255_gene3008	5.989e-255	796.0	COG0402@1|root,COG0402@2|Bacteria,1MX34@1224|Proteobacteria,2U0IN@28211|Alphaproteobacteria,3N784@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	codA	-	3.5.4.1	ko:K01485	ko00240,ko00330,ko01100,map00240,map00330,map01100	-	R00974,R01411,R02922	RC00074,RC00514,RC00809	ko00000,ko00001,ko01000	-	-	-	Amidohydro_3
DYD3_k127_5823569_9	543632.JOJL01000057_gene364	3.892e-05	55.0	COG3629@1|root,COG3903@1|root,COG3629@2|Bacteria,COG3903@2|Bacteria,2GIRS@201174|Actinobacteria,4D9E2@85008|Micromonosporales	201174|Actinobacteria	T	Bacterial transcriptional activator domain	-	-	-	-	-	-	-	-	-	-	-	-	BTAD,NB-ARC,TPR_10,TPR_12,TPR_7,TPR_8,Trans_reg_C
DYD3_k127_5848186_1	1123240.ATVO01000003_gene164	4.125e-179	571.0	COG0620@1|root,COG0620@2|Bacteria,1MUI9@1224|Proteobacteria,2TTWK@28211|Alphaproteobacteria,2K3CA@204457|Sphingomonadales	204457|Sphingomonadales	E	Cobalamin-independent synthase, Catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	Meth_synt_2
DYD3_k127_5848186_3	551275.KB899546_gene2411	7.519e-104	353.0	2DB94@1|root,2Z7UJ@2|Bacteria,1QYQJ@1224|Proteobacteria,2TXW0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Alginate export	-	-	-	-	-	-	-	-	-	-	-	-	Alginate_exp
DYD3_k127_5848186_0	1192759.AKIB01000026_gene2163	7.348e-233	743.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_5848186_2	402881.Plav_0702	2.02e-177	561.0	COG2189@1|root,COG2189@2|Bacteria,1MX9M@1224|Proteobacteria,2TSW9@28211|Alphaproteobacteria,1JN9F@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	DNA methylase	ccrM	-	2.1.1.72	ko:K13581	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko02048	-	-	-	N6_N4_Mtase
DYD3_k127_5849018_2	1280948.HY36_07555	1.104e-41	165.0	COG3637@1|root,COG3637@2|Bacteria,1NC11@1224|Proteobacteria,2UTTI@28211|Alphaproteobacteria,43XIG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	OmpA-like transmembrane domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl
DYD3_k127_5849018_3	1280941.HY2_04730	7.084e-11	72.0	2CPJB@1|root,32SJ9@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5849018_1	1280941.HY2_14680	1.813e-51	189.0	296B6@1|root,2ZTM2@2|Bacteria,1PBBC@1224|Proteobacteria,2UWTS@28211|Alphaproteobacteria,43XR2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5849018_0	1161401.ASJA01000013_gene713	1.001e-53	200.0	COG0025@1|root,COG0025@2|Bacteria,1QTUE@1224|Proteobacteria,2TW3I@28211|Alphaproteobacteria,43WXI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Sodium hydrogen exchanger	-	-	-	-	-	-	-	-	-	-	-	-	Na_H_Exchanger,TrkA_N
DYD3_k127_5849018_4	394221.Mmar10_2869	7.15e-08	55.0	COG0025@1|root,COG0569@1|root,COG0025@2|Bacteria,COG0569@2|Bacteria,1QTUE@1224|Proteobacteria,2TW3I@28211|Alphaproteobacteria,43WXI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Sodium hydrogen exchanger	-	-	-	-	-	-	-	-	-	-	-	-	Na_H_Exchanger,TrkA_N
DYD3_k127_5850940_10	1187851.A33M_1917	8.855e-10	65.0	COG2199@1|root,COG3706@2|Bacteria,1R1XK@1224|Proteobacteria,2TZ6S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
DYD3_k127_5850940_1	1158292.JPOE01000005_gene185	2.702e-193	616.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2VH71@28216|Betaproteobacteria,1KKFV@119065|unclassified Burkholderiales	28216|Betaproteobacteria	C	Aldehyde dehydrogenase family	-	-	1.2.1.28	ko:K00141	ko00622,ko00623,ko00627,ko01100,ko01120,ko01220,map00622,map00623,map00627,map01100,map01120,map01220	M00537,M00538	R01293,R01419,R05289,R05663,R05664,R07667	RC00075	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_5850940_11	1282876.BAOK01000002_gene633	1.982e-08	61.0	COG3686@1|root,COG3686@2|Bacteria,1PKW0@1224|Proteobacteria,2UZHT@28211|Alphaproteobacteria,4BSVU@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	MAPEG family	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
DYD3_k127_5850940_7	582402.Hbal_0464	1.502e-33	132.0	COG1733@1|root,COG1733@2|Bacteria,1PGBV@1224|Proteobacteria,2UGDZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_5850940_0	627192.SLG_27660	2.307e-247	776.0	COG0028@1|root,COG0028@2|Bacteria,1MWC3@1224|Proteobacteria,2TTA2@28211|Alphaproteobacteria,2K901@204457|Sphingomonadales	204457|Sphingomonadales	EH	Thiamine pyrophosphate enzyme, central domain	-	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_5850940_2	450851.PHZ_c3363	1.931e-173	567.0	COG4206@1|root,COG4206@2|Bacteria,1MUR5@1224|Proteobacteria,2U4MS@28211|Alphaproteobacteria,2KK9C@204458|Caulobacterales	204458|Caulobacterales	H	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug
DYD3_k127_5850940_3	394221.Mmar10_1462	4.307e-120	407.0	COG2041@1|root,COG2041@2|Bacteria,1MUW0@1224|Proteobacteria,2TS40@28211|Alphaproteobacteria,43Z0B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Oxidoreductase molybdopterin binding domain	msrP	-	-	ko:K07147	-	-	-	-	ko00000,ko01000	-	-	-	Oxidored_molyb
DYD3_k127_5850940_4	394221.Mmar10_1463	5.59e-60	221.0	COG2717@1|root,COG2717@2|Bacteria,1RDUP@1224|Proteobacteria,2U5HG@28211|Alphaproteobacteria,4409M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Ferric reductase like transmembrane component	msrQ	-	-	ko:K17247	-	-	-	-	ko00000	-	-	-	Ferric_reduct
DYD3_k127_5850940_8	1161401.ASJA01000002_gene2573	2.702e-30	123.0	2EDFV@1|root,337C2@2|Bacteria,1NEHC@1224|Proteobacteria,2UGDN@28211|Alphaproteobacteria,4403D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5850940_6	570952.ATVH01000013_gene2780	1.48e-33	131.0	COG2154@1|root,COG2154@2|Bacteria,1MZ5Q@1224|Proteobacteria,2UBWN@28211|Alphaproteobacteria,2JU2A@204441|Rhodospirillales	204441|Rhodospirillales	H	pterin-4-alpha-carbinolamine dehydratase	phhB	-	4.2.1.96	ko:K01724	ko00790,map00790	-	R04734	RC01208	ko00000,ko00001,ko01000,ko04147	-	-	-	Pterin_4a
DYD3_k127_5850940_9	1161401.ASJA01000002_gene2570	1.018e-20	97.0	2E8W9@1|root,3336G@2|Bacteria,1N7PH@1224|Proteobacteria,2UI6X@28211|Alphaproteobacteria,43YN3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5850940_5	1280944.HY17_02430	9.939e-39	149.0	COG4953@1|root,COG4953@2|Bacteria,1MUA9@1224|Proteobacteria,2TR2R@28211|Alphaproteobacteria,43XAN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	penicillin-binding protein 1C	pbpC	-	2.4.1.129	ko:K05367	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	BiPBP_C,Transgly,Transpeptidase
DYD3_k127_5858649_4	314254.OA2633_06609	9.096e-89	298.0	COG0842@1|root,COG0842@2|Bacteria,1MW5R@1224|Proteobacteria,2TU59@28211|Alphaproteobacteria,43XA1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG0842 ABC-type multidrug transport system, permease component	MA20_09460	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD3_k127_5858649_12	1123501.KB902288_gene1660	8.74e-25	118.0	COG1196@1|root,COG4249@1|root,COG1196@2|Bacteria,COG4249@2|Bacteria	2|Bacteria	S	B-1 B cell differentiation	pspA	-	-	-	-	-	-	-	-	-	-	-	CW_binding_1,GUN4,Peptidase_C14,TPR_10
DYD3_k127_5858649_14	65672.G4TVD6	3.222e-08	65.0	KOG0271@1|root,KOG0271@2759|Eukaryota,3AGU6@33154|Opisthokonta,3Q4J3@4751|Fungi,3V7B1@5204|Basidiomycota,22FCW@155619|Agaricomycetes,3H8YV@355688|Agaricomycetes incertae sedis	4751|Fungi	D	WD40 repeat-like protein	-	-	-	-	-	-	-	-	-	-	-	-	NACHT,WD40
DYD3_k127_5858649_5	1379270.AUXF01000005_gene644	7.704e-61	218.0	28NKC@1|root,2ZBM7@2|Bacteria,1ZUHB@142182|Gemmatimonadetes	142182|Gemmatimonadetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5858649_7	395965.Msil_2133	9.837e-43	168.0	COG0132@1|root,COG0132@2|Bacteria,1RDRK@1224|Proteobacteria,2U5AJ@28211|Alphaproteobacteria,3NB1C@45404|Beijerinckiaceae	28211|Alphaproteobacteria	H	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring	bioD	GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.1.197,6.3.3.3	ko:K01935,ko:K02169	ko00780,ko01100,map00780,map01100	M00123,M00572,M00573,M00577	R03182,R09543	RC00003,RC00460,RC00868	ko00000,ko00001,ko00002,ko01000	-	-	-	AAA_26
DYD3_k127_5858649_3	460265.Mnod_6357	1.899e-117	391.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TTAK@28211|Alphaproteobacteria,1JTE7@119045|Methylobacteriaceae	28211|Alphaproteobacteria	H	Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide	bioF	-	2.3.1.47	ko:K00652	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R03210,R10124	RC00004,RC00039,RC02725	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_5858649_6	1160137.KB907307_gene601	1.852e-49	194.0	COG1062@1|root,COG1062@2|Bacteria,2GM8C@201174|Actinobacteria,4G061@85025|Nocardiaceae	201174|Actinobacteria	C	Alcohol dehydrogenase GroES-like domain	-	-	1.1.1.1,1.1.1.284	ko:K00121	ko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_5858649_8	1122222.AXWR01000022_gene364	3.093e-36	147.0	COG3485@1|root,COG3485@2|Bacteria,1WJMF@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	Q	Dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Dioxygenase_C
DYD3_k127_5858649_9	85643.Tmz1t_0031	3.813e-32	140.0	COG4249@1|root,COG4249@2|Bacteria,1N2WM@1224|Proteobacteria	1224|Proteobacteria	S	TIR domain	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_5858649_1	402881.Plav_0033	5.204e-149	483.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,1JN20@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-III	bioA	-	2.6.1.18,2.6.1.62	ko:K00822,ko:K00833	ko00280,ko00410,ko00640,ko00780,ko01100,map00280,map00410,map00640,map00780,map01100	M00123,M00573,M00577	R00907,R03231,R04187	RC00006,RC00008,RC00062,RC00160,RC00887	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_5858649_0	551789.ATVJ01000001_gene1276	2.818e-190	601.0	COG1690@1|root,COG1690@2|Bacteria,1MUHA@1224|Proteobacteria,2TTUE@28211|Alphaproteobacteria,440RZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	tRNA-splicing ligase RtcB	-	-	6.5.1.3	ko:K14415,ko:K18148	ko01501,map01501	-	-	-	ko00000,ko00001,ko01000,ko03016	-	-	-	RtcB
DYD3_k127_5858649_11	870187.Thini_3940	5.485e-27	115.0	2DMJE@1|root,32RYR@2|Bacteria,1N7PS@1224|Proteobacteria,1S4DD@1236|Gammaproteobacteria,462Z7@72273|Thiotrichales	72273|Thiotrichales	S	Domain of unknown function (DUF4112)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4112
DYD3_k127_5858649_13	1472418.BBJC01000002_gene953	1.435e-19	93.0	COG0401@1|root,COG0401@2|Bacteria,1N7K3@1224|Proteobacteria,2UFGT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	homolog of Blt101	-	-	-	-	-	-	-	-	-	-	-	-	Pmp3
DYD3_k127_5858649_2	62928.azo2663	2.706e-121	395.0	COG0450@1|root,COG0450@2|Bacteria,1MX2B@1224|Proteobacteria,2VK8F@28216|Betaproteobacteria,2KWZJ@206389|Rhodocyclales	206389|Rhodocyclales	O	C-terminal domain of 1-Cys peroxiredoxin	-	-	-	-	-	-	-	-	-	-	-	-	1-cysPrx_C,AhpC-TSA
DYD3_k127_5858649_10	441620.Mpop_5166	2.244e-27	117.0	COG2062@1|root,COG2062@2|Bacteria,1N0FX@1224|Proteobacteria,2UBYD@28211|Alphaproteobacteria,1JVB0@119045|Methylobacteriaceae	28211|Alphaproteobacteria	T	PFAM Phosphoglycerate mutase	sixA	-	-	ko:K08296	-	-	-	-	ko00000,ko01000	-	-	-	His_Phos_1
DYD3_k127_5893757_1	1123503.KB908058_gene1012	6.407e-149	483.0	COG0172@1|root,COG0172@2|Bacteria,1MUJF@1224|Proteobacteria,2TR4T@28211|Alphaproteobacteria,2KFZC@204458|Caulobacterales	204458|Caulobacterales	J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)	serS	-	6.1.1.11	ko:K01875	ko00970,map00970	M00359,M00360	R03662,R08218	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Seryl_tRNA_N,tRNA-synt_2b
DYD3_k127_5893757_2	85963.jhp_0571	4.114e-30	138.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,42M5H@68525|delta/epsilon subdivisions	1224|Proteobacteria	S	FOG TPR repeat SEL1 subfamily	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
DYD3_k127_5893757_0	1479238.JQMZ01000001_gene1648	3.783e-179	571.0	COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,2TRCI@28211|Alphaproteobacteria,43WE2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX1	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_5918763_7	886293.Sinac_1155	1.053e-46	188.0	COG0666@1|root,COG0666@2|Bacteria,2J1F8@203682|Planctomycetes	203682|Planctomycetes	S	Ankyrin repeat	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2,Ank_4
DYD3_k127_5918763_8	180281.CPCC7001_367	1.852e-29	130.0	COG0491@1|root,COG0491@2|Bacteria,1G400@1117|Cyanobacteria	1117|Cyanobacteria	S	Zn-dependent	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_5918763_3	627192.SLG_31400	4.271e-104	357.0	COG2960@1|root,COG2960@2|Bacteria,1RGT9@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_5918763_1	1379270.AUXF01000004_gene3191	2.055e-164	546.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt3,PSD2,PSD3,PSD4,PSD5
DYD3_k127_5918763_10	318586.Pden_3546	2.193e-05	57.0	COG1846@1|root,COG1846@2|Bacteria,1N1CJ@1224|Proteobacteria,2UCHN@28211|Alphaproteobacteria,2PX7Y@265|Paracoccus	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_5918763_2	1211115.ALIQ01000171_gene4082	1.631e-108	357.0	COG1801@1|root,COG1801@2|Bacteria,1MU7F@1224|Proteobacteria,2TT1D@28211|Alphaproteobacteria,3NAKQ@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Protein of unknown function DUF72	MA20_09500	-	-	-	-	-	-	-	-	-	-	-	DUF72
DYD3_k127_5918763_0	314285.KT71_03790	4.909e-181	590.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,1RMIT@1236|Gammaproteobacteria,1J918@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	H	Gamma-glutamyltranspeptidase	ggt	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
DYD3_k127_5918763_6	450851.PHZ_c0711	1.791e-47	179.0	COG0664@1|root,COG0664@2|Bacteria,1MXID@1224|Proteobacteria,2U1G1@28211|Alphaproteobacteria,2KK5R@204458|Caulobacterales	204458|Caulobacterales	K	Cyclic nucleotide-monophosphate binding domain	-	-	-	ko:K10914	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_5918763_5	1185652.USDA257_c28380	6.473e-70	268.0	COG2114@1|root,COG4252@1|root,COG2114@2|Bacteria,COG4252@2|Bacteria,1MV1V@1224|Proteobacteria,2VFBT@28211|Alphaproteobacteria,4BNCA@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	CHASE2,Guanylate_cyc
DYD3_k127_5918763_4	394221.Mmar10_0461	3.7e-99	343.0	COG0642@1|root,COG0642@2|Bacteria,1QYPP@1224|Proteobacteria,2TXUU@28211|Alphaproteobacteria,44153@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c
DYD3_k127_5937503_3	1123269.NX02_26300	5.118e-116	377.0	COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,2TRCF@28211|Alphaproteobacteria,2K0A2@204457|Sphingomonadales	204457|Sphingomonadales	IQ	Acetoacetyl-CoA reductase	phbB	-	1.1.1.36	ko:K00023	ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200	M00373	R01779,R01977	RC00103,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
DYD3_k127_5937503_1	1123504.JQKD01000032_gene4510	3.135e-184	590.0	COG0477@1|root,COG0477@2|Bacteria,1MWXZ@1224|Proteobacteria,2VN35@28216|Betaproteobacteria,4AANB@80864|Comamonadaceae	28216|Betaproteobacteria	P	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_5937503_14	926560.KE387023_gene2066	7.006e-28	115.0	COG2337@1|root,COG2337@2|Bacteria	2|Bacteria	T	Toxic component of a toxin-antitoxin (TA) module	-	-	-	ko:K07171	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PemK_toxin
DYD3_k127_5937503_0	1411123.JQNH01000001_gene3278	4.864e-190	599.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Belongs to the thiolase family	phbA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_5937503_10	1449049.JONW01000005_gene1520	9.594e-63	223.0	COG5394@1|root,COG5394@2|Bacteria,1RHRC@1224|Proteobacteria,2TQWQ@28211|Alphaproteobacteria,2KGAA@204458|Caulobacterales	204458|Caulobacterales	S	Polyhydroxyalkanoate synthesis repressor PhaR	-	-	-	-	-	-	-	-	-	-	-	-	PHB_acc,PHB_acc_N
DYD3_k127_5937503_12	1123059.KB823011_gene1919	2.776e-40	156.0	2E6XE@1|root,331GU@2|Bacteria,1N7WP@1224|Proteobacteria,2UG23@28211|Alphaproteobacteria,440RN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5937503_5	1121948.AUAC01000004_gene199	3.709e-99	330.0	COG1215@1|root,COG1215@2|Bacteria,1QVG6@1224|Proteobacteria,2TWF3@28211|Alphaproteobacteria,43WWM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Glycosyl transferase group 2 family protein	-	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2
DYD3_k127_5937503_4	1161401.ASJA01000006_gene1990	7.916e-115	392.0	COG1807@1|root,COG1807@2|Bacteria,1NMIZ@1224|Proteobacteria,2TRS4@28211|Alphaproteobacteria,440RA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	PMT,PMT_2
DYD3_k127_5937503_2	1123503.KB908057_gene2655	2.244e-120	395.0	COG0119@1|root,COG0119@2|Bacteria,1MUMX@1224|Proteobacteria,2TT1R@28211|Alphaproteobacteria,2KFEX@204458|Caulobacterales	204458|Caulobacterales	E	Hydroxymethylglutaryl-CoA lyase	-	-	4.1.3.4	ko:K01640	ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146	M00036,M00088	R01360,R08090	RC00502,RC00503,RC01118,RC01946	ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like
DYD3_k127_5937503_8	1280949.HAD_04900	2.133e-64	230.0	28MWZ@1|root,2ZB46@2|Bacteria,1R7K6@1224|Proteobacteria,2U4ZP@28211|Alphaproteobacteria,43ZSI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5937503_16	1298867.AUES01000038_gene837	4.885e-10	66.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,3K12N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Ribonuclease B OB domain	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_5937503_20	391600.ABRU01000026_gene1055	0.0005734	46.0	290EU@1|root,33Z0U@2|Bacteria,1NY98@1224|Proteobacteria,2UTC0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5937503_18	1382303.JPOM01000001_gene1336	6.103e-09	63.0	2ENK8@1|root,33G7N@2|Bacteria,1Q260@1224|Proteobacteria,2V64M@28211|Alphaproteobacteria,2KJEH@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5937503_9	1282360.ABAC460_16805	6.154e-64	229.0	COG5507@1|root,COG5507@2|Bacteria,1R0EM@1224|Proteobacteria,2TYQ4@28211|Alphaproteobacteria,2KJG4@204458|Caulobacterales	204458|Caulobacterales	S	NIPSNAP	-	-	-	-	-	-	-	-	-	-	-	-	NIPSNAP
DYD3_k127_5937503_13	1095769.CAHF01000021_gene943	2.664e-31	132.0	COG2755@1|root,COG2755@2|Bacteria,1MWT8@1224|Proteobacteria,2VVC1@28216|Betaproteobacteria	28216|Betaproteobacteria	E	Domain of Unknown Function (DUF1080)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1080
DYD3_k127_5937503_7	391038.Bphy_4714	6.231e-66	244.0	COG0220@1|root,COG0220@2|Bacteria,1QTX5@1224|Proteobacteria,2WH0A@28216|Betaproteobacteria,1K3DS@119060|Burkholderiaceae	28216|Betaproteobacteria	J	Protein of unknown function (DUF938)	-	-	-	-	-	-	-	-	-	-	-	-	DUF938
DYD3_k127_5937503_11	1096546.WYO_0827	4.095e-62	226.0	COG1295@1|root,COG1295@2|Bacteria,1MXQA@1224|Proteobacteria,2TSFP@28211|Alphaproteobacteria,1JRP9@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	ribonuclease BN	-	-	-	ko:K07058	-	-	-	-	ko00000	-	-	-	Virul_fac_BrkB
DYD3_k127_5937503_6	1479238.JQMZ01000001_gene1246	2.445e-97	324.0	COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,2TR2M@28211|Alphaproteobacteria,43WNZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	mutL	GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03572	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	DNA_mis_repair,HATPase_c_3,MutL_C
DYD3_k127_5937503_15	1380394.JADL01000003_gene5103	7.544e-21	97.0	COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,2TR2M@28211|Alphaproteobacteria,2JPB5@204441|Rhodospirillales	204441|Rhodospirillales	L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	mutL	-	-	ko:K03572	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	DNA_mis_repair,HATPase_c_3,MutL_C
DYD3_k127_596118_5	627192.SLG_20050	1.567e-16	81.0	2FHPP@1|root,349H9@2|Bacteria,1NC8W@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_596118_0	1123020.AUIE01000005_gene4247	1.75e-195	623.0	COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,1RMGJ@1236|Gammaproteobacteria,1YGNR@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	Q	Flavin containing amine oxidoreductase	crtI	-	1.14.99.44,1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31,5.2.1.13	ko:K09835,ko:K10027,ko:K10210	ko00906,ko01100,ko01110,map00906,map01100,map01110	M00097	R04787,R04798,R04800,R07512,R07654,R09671,R09691,R09692,R09727,R09728	RC00254,RC01214,RC01960,RC02088,RC02089,RC02605,RC02626,RC02638	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
DYD3_k127_596118_1	886293.Sinac_0128	1.581e-133	440.0	COG0654@1|root,COG0654@2|Bacteria,2IXNJ@203682|Planctomycetes	203682|Planctomycetes	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
DYD3_k127_596118_6	1144310.PMI07_002084	7.818e-06	56.0	COG1247@1|root,COG1247@2|Bacteria,1QU4K@1224|Proteobacteria,2TVZA@28211|Alphaproteobacteria,4BDVF@82115|Rhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_596118_4	1192759.AKIB01000026_gene2160	3.219e-58	214.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TSTP@28211|Alphaproteobacteria,2K8WB@204457|Sphingomonadales	204457|Sphingomonadales	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_596118_3	627192.SLG_20160	4.723e-89	304.0	COG0491@1|root,COG0491@2|Bacteria,1N22F@1224|Proteobacteria,2U2V5@28211|Alphaproteobacteria,2K3EH@204457|Sphingomonadales	204457|Sphingomonadales	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_596118_2	627192.SLG_20070	1.029e-123	407.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2VFM0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_600726_0	1510531.JQJJ01000010_gene2360	7.15e-256	803.0	COG1651@1|root,COG3004@1|root,COG1651@2|Bacteria,COG3004@2|Bacteria,1MW15@1224|Proteobacteria,2TSI5@28211|Alphaproteobacteria,3JX2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	) H( ) antiporter that extrudes sodium in exchange for external protons	nhaA	-	-	ko:K03313	-	-	-	-	ko00000,ko02000	2.A.33.1	-	-	Na_H_antiport_1,Thioredoxin_4
DYD3_k127_600726_1	1187851.A33M_2010	7.709e-92	307.0	COG0800@1|root,COG0800@2|Bacteria,1MUVJ@1224|Proteobacteria,2TUMH@28211|Alphaproteobacteria,3FDIF@34008|Rhodovulum	28211|Alphaproteobacteria	G	KDPG and KHG aldolase	eda	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	4.1.2.14,4.1.3.42	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	M00008,M00061,M00308,M00631	R00470,R05605	RC00307,RC00308,RC00435	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldolase
DYD3_k127_600726_2	1161401.ASJA01000027_gene40	8.808e-27	123.0	COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2U2Q2@28211|Alphaproteobacteria,43XR8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,Response_reg
DYD3_k127_6020944_0	639283.Snov_3894	1.247e-159	514.0	COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2TR9H@28211|Alphaproteobacteria,3EYUC@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	4Fe-4S dicluster domain	glcF	-	-	ko:K11473	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001	-	-	-	CCG,Fer4_7
DYD3_k127_6020944_1	478741.JAFS01000001_gene1403	6.636e-10	68.0	COG2887@1|root,COG2887@2|Bacteria,46SDQ@74201|Verrucomicrobia,37G8T@326457|unclassified Verrucomicrobia	74201|Verrucomicrobia	L	PD-(D/E)XK nuclease superfamily	-	-	3.6.4.12	ko:K16899	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1
DYD3_k127_6024844_5	1479238.JQMZ01000001_gene2415	8.141e-61	217.0	COG5385@1|root,COG5385@2|Bacteria,1MVEY@1224|Proteobacteria,2TSE6@28211|Alphaproteobacteria,43Y2A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0642 Signal transduction histidine kinase	MA20_46320	-	-	ko:K13588	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001	-	-	-	HPTransfase
DYD3_k127_6024844_0	1123229.AUBC01000010_gene3477	2.687e-267	853.0	COG0643@1|root,COG0643@2|Bacteria,1MUAG@1224|Proteobacteria,2TSN2@28211|Alphaproteobacteria,3JTYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Function of homologous gene experimentally demonstrated in an other organism	cheA	-	2.7.13.3	ko:K03407	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035	-	-	-	CheW,H-kinase_dim,HATPase_c,Hpt,Response_reg
DYD3_k127_6024844_7	551789.ATVJ01000001_gene2165	2.547e-47	178.0	COG0835@1|root,COG0835@2|Bacteria,1RAH1@1224|Proteobacteria,2U59Y@28211|Alphaproteobacteria,43YBI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	Two component signalling adaptor domain	cheW	-	-	ko:K03408	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheW
DYD3_k127_6024844_6	394221.Mmar10_0660	7.759e-59	207.0	COG0745@1|root,COG0745@2|Bacteria,1QU38@1224|Proteobacteria,2TVXD@28211|Alphaproteobacteria,43XWE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Chemotaxis protein CheY	-	-	-	ko:K03413	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko02022,ko02035	-	-	-	Response_reg
DYD3_k127_6024844_3	394221.Mmar10_0661	6.622e-106	355.0	COG2201@1|root,COG2201@2|Bacteria,1MWCN@1224|Proteobacteria,2TSGV@28211|Alphaproteobacteria,43X5Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR	cheB	-	3.1.1.61,3.5.1.44	ko:K03412	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko02022,ko02035	-	-	-	CheB_methylest,Response_reg
DYD3_k127_6024844_4	394221.Mmar10_0662	6.32e-96	321.0	COG1352@1|root,COG1352@2|Bacteria,1MU6W@1224|Proteobacteria,2TRQ3@28211|Alphaproteobacteria,43X1M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	COG1352 Methylase of chemotaxis methyl-accepting proteins	cheR	-	2.1.1.80	ko:K00575	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko01000,ko02035	-	-	-	CheR,CheR_N
DYD3_k127_6024844_10	1207063.P24_01825	1.073e-18	90.0	COG3553@1|root,COG3553@2|Bacteria,1N757@1224|Proteobacteria,2UFEV@28211|Alphaproteobacteria,2JTZE@204441|Rhodospirillales	204441|Rhodospirillales	K	Uncharacterized protein conserved in bacteria (DUF2218)	-	-	-	ko:K09956	-	-	-	-	ko00000	-	-	-	DUF2218
DYD3_k127_6024844_8	269796.Rru_A3441	2.542e-41	159.0	COG1695@1|root,COG1695@2|Bacteria,1RHSE@1224|Proteobacteria,2U1HF@28211|Alphaproteobacteria,2JTRG@204441|Rhodospirillales	204441|Rhodospirillales	K	Transcriptional regulator PadR-like family	-	-	-	-	-	-	-	-	-	-	-	-	PadR
DYD3_k127_6024844_2	394221.Mmar10_0669	2.371e-135	433.0	COG0745@1|root,COG0745@2|Bacteria,1MWVI@1224|Proteobacteria,2TRSP@28211|Alphaproteobacteria,43WEK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	ctrA	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141	-	ko:K02483,ko:K13584	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_6024844_1	394221.Mmar10_0670	6.471e-181	576.0	COG1157@1|root,COG1157@2|Bacteria,1MUH6@1224|Proteobacteria,2TRXU@28211|Alphaproteobacteria,43W6J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	COG1157 Flagellar biosynthesis type III secretory pathway ATPase	fliI	-	3.6.3.14	ko:K02412	ko02040,map02040	-	-	-	ko00000,ko00001,ko01000,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	ATP-synt_ab,ATP-synt_ab_N
DYD3_k127_6024844_9	394221.Mmar10_0671	1.027e-35	140.0	2DI3C@1|root,301WS@2|Bacteria,1Q71Q@1224|Proteobacteria,2V6Z7@28211|Alphaproteobacteria,43YPF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	FliJ
DYD3_k127_6027516_3	1088721.NSU_1590	8.939e-07	57.0	2FFKQ@1|root,347I4@2|Bacteria,1P8PF@1224|Proteobacteria,2UYV6@28211|Alphaproteobacteria,2KAJJ@204457|Sphingomonadales	204457|Sphingomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_6027516_1	1040989.AWZU01000002_gene5442	7.672e-118	400.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2VF1X@28211|Alphaproteobacteria,3K6DD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	3.4.16.4	ko:K18988	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Beta-lactamase,DUF3471
DYD3_k127_6027516_2	1280948.HY36_01165	3.151e-100	364.0	COG2373@1|root,COG2373@2|Bacteria,1MV7J@1224|Proteobacteria,2TSAE@28211|Alphaproteobacteria,43WFC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG2373 Large extracellular alpha-helical protein	MA20_30110	-	-	ko:K06894	-	-	-	-	ko00000	-	-	-	A2M,A2M_N,A2M_N_2,MG1,PAN_1,Thiol-ester_cl
DYD3_k127_6027516_0	1122613.ATUP01000001_gene1566	0.0	1386.0	COG2373@1|root,COG2373@2|Bacteria,1MV7J@1224|Proteobacteria,2TSAE@28211|Alphaproteobacteria,43WFC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG2373 Large extracellular alpha-helical protein	MA20_30110	-	-	ko:K06894	-	-	-	-	ko00000	-	-	-	A2M,A2M_N,A2M_N_2,MG1,PAN_1,Thiol-ester_cl
DYD3_k127_6065913_0	1280948.HY36_05680	7.026e-217	681.0	COG1282@1|root,COG1282@2|Bacteria,1MUP4@1224|Proteobacteria,2TQN1@28211|Alphaproteobacteria,43W97@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	pntB	GO:0008150,GO:0008152,GO:0055114	1.6.1.2	ko:K00325	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	PNTB
DYD3_k127_6065913_9	1395587.P364_0100020	1.674e-06	59.0	2EV8Z@1|root,33NPN@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6065913_7	136993.KB900626_gene3973	2.53e-20	93.0	2EH09@1|root,33ASB@2|Bacteria,1QWA1@1224|Proteobacteria,2UMI7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2442)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2442
DYD3_k127_6065913_6	1189612.A33Q_3850	2.872e-23	102.0	2E3EN@1|root,32YDN@2|Bacteria,4PNB3@976|Bacteroidetes,47WP2@768503|Cytophagia	976|Bacteroidetes	S	Domain of unknown function (DUF4160)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4160
DYD3_k127_6065913_8	931627.MycrhDRAFT_4295	2.005e-07	59.0	COG1846@1|root,COG1846@2|Bacteria,2GQS5@201174|Actinobacteria,23AF7@1762|Mycobacteriaceae	201174|Actinobacteria	K	IclR helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_6065913_5	1078085.HMPREF1210_03334	1.709e-27	119.0	COG0346@1|root,COG0346@2|Bacteria,1VCGT@1239|Firmicutes,4HKDV@91061|Bacilli,26FTE@186818|Planococcaceae	91061|Bacilli	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_6065913_1	1161401.ASJA01000013_gene733	8.95e-117	384.0	COG4152@1|root,COG4152@2|Bacteria,1QUPV@1224|Proteobacteria,2TW40@28211|Alphaproteobacteria,440XV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	AAA domain, putative AbiEii toxin, Type IV TA system	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran,DUF4162
DYD3_k127_6065913_2	394221.Mmar10_2558	1.12e-114	387.0	COG1668@1|root,COG1668@2|Bacteria,1R62N@1224|Proteobacteria,2U1RZ@28211|Alphaproteobacteria,43WE3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CP	COG1668 ABC-type Na efflux pump, permease component	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD3_k127_6065913_4	394221.Mmar10_2562	7.826e-29	117.0	COG0828@1|root,COG0828@2|Bacteria,1MZA1@1224|Proteobacteria,2UC58@28211|Alphaproteobacteria,43Y7T@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bS21 family	rpsU	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904	-	ko:K02970	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S21
DYD3_k127_6065913_3	1161401.ASJA01000013_gene735	1.181e-53	197.0	COG5590@1|root,COG5590@2|Bacteria,1MW25@1224|Proteobacteria,2U9ST@28211|Alphaproteobacteria,43XPJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	rpsU-divergently transcribed protein	cOQ9	-	-	ko:K18587	-	-	-	-	ko00000	-	-	-	COQ9
DYD3_k127_6069714_0	1192759.AKIB01000026_gene2163	2.709e-253	802.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_6069714_2	1096930.L284_02675	4.131e-87	307.0	COG2271@1|root,COG2271@2|Bacteria,1P24P@1224|Proteobacteria,2URTW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Major facilitator superfamily	-	-	-	ko:K08195	-	-	-	-	ko00000,ko02000	2.A.1.15	-	-	MFS_1,MFS_4,Sugar_tr
DYD3_k127_6069714_4	1081640.AGFU01000127_gene10	3.272e-60	214.0	COG0288@1|root,COG0288@2|Bacteria,1NGFN@1224|Proteobacteria,2TRPD@28211|Alphaproteobacteria,2K1U7@204457|Sphingomonadales	204457|Sphingomonadales	P	Reversible hydration of carbon dioxide	-	-	4.2.1.1	ko:K01673	ko00910,map00910	-	R00132,R10092	RC02807	ko00000,ko00001,ko01000	-	-	-	Pro_CA
DYD3_k127_6069714_1	639030.JHVA01000001_gene2808	5.183e-93	317.0	COG0491@1|root,COG0491@2|Bacteria,3Y54H@57723|Acidobacteria,2JM9F@204432|Acidobacteriia	204432|Acidobacteriia	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6069714_3	627192.SLG_34770	6.03e-62	227.0	COG2813@1|root,COG2813@2|Bacteria,1QWWU@1224|Proteobacteria,2TX6V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	O-methyltransferase	crtF	-	2.1.1.210	ko:K09846	ko00906,ko01100,map00906,map01100	-	R07521,R07524,R07527,R07529,R07533,R07535	RC00003,RC02082	ko00000,ko00001,ko01000	-	-	-	Dimerisation2,Methyltransf_2
DYD3_k127_6069714_5	1121949.AQXT01000002_gene1851	1.416e-28	127.0	COG0491@1|root,COG0491@2|Bacteria,1PKW8@1224|Proteobacteria,2TUW8@28211|Alphaproteobacteria,43XAS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6075690_10	279238.Saro_2071	0.0001011	54.0	COG0438@1|root,COG0438@2|Bacteria,1R564@1224|Proteobacteria,2TTA7@28211|Alphaproteobacteria,2K1XD@204457|Sphingomonadales	204457|Sphingomonadales	M	glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_6075690_6	745310.G432_00350	8.003e-20	105.0	COG3297@1|root,COG3297@2|Bacteria,1N0FQ@1224|Proteobacteria,2UEET@28211|Alphaproteobacteria,2K35M@204457|Sphingomonadales	204457|Sphingomonadales	U	Type II secretion system (T2SS), protein L	gspL	-	-	ko:K02461	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	GspL_C,T2SSL
DYD3_k127_6075690_3	1161401.ASJA01000004_gene2261	1.057e-58	225.0	COG3156@1|root,COG3156@2|Bacteria,1RAQM@1224|Proteobacteria,2U6QZ@28211|Alphaproteobacteria,440N7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Type II secretion system (T2SS), protein K	-	-	-	ko:K02460	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSK
DYD3_k127_6075690_5	1280948.HY36_16065	1.154e-30	136.0	COG4795@1|root,COG4795@2|Bacteria,1N942@1224|Proteobacteria,2UHZB@28211|Alphaproteobacteria,43YIR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Type II secretion system (T2SS), protein J	-	-	-	ko:K02459	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl,T2SSJ
DYD3_k127_6075690_8	913325.N799_03640	1.832e-14	83.0	COG2165@1|root,COG2165@2|Bacteria,1N737@1224|Proteobacteria,1SC8X@1236|Gammaproteobacteria,1X8F5@135614|Xanthomonadales	135614|Xanthomonadales	U	Type II secretory pathway, pseudopilin	xcsI	-	-	ko:K02458	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl,T2SSI
DYD3_k127_6075690_9	1502850.FG91_02009	2.954e-11	75.0	COG2165@1|root,COG2165@2|Bacteria,1NGEA@1224|Proteobacteria,2TY0V@28211|Alphaproteobacteria,2KEJZ@204457|Sphingomonadales	204457|Sphingomonadales	U	Type II transport protein GspH	-	-	-	ko:K02457	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	GspH,N_methyl
DYD3_k127_6075690_4	1161401.ASJA01000004_gene2265	1.971e-56	203.0	COG2165@1|root,COG2165@2|Bacteria,1RDX2@1224|Proteobacteria,2U8VA@28211|Alphaproteobacteria,440WQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	Type II secretion system (T2SS), protein G	gspG	-	-	ko:K02456	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl,T2SSG
DYD3_k127_6075690_2	1385515.N791_08440	4.472e-69	252.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,1RQ86@1236|Gammaproteobacteria,1X3ZU@135614|Xanthomonadales	135614|Xanthomonadales	U	General secretion pathway protein	xcsF	-	-	ko:K02455	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSF
DYD3_k127_6075690_0	1161401.ASJA01000004_gene2267	1.535e-198	630.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2TRMU@28211|Alphaproteobacteria,43WX6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	COG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB	gspE	-	-	ko:K02454	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSE,T2SSE_N
DYD3_k127_6075690_1	1161401.ASJA01000004_gene2268	6.22e-169	551.0	COG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,2TT8A@28211|Alphaproteobacteria,43WBK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NU	general secretion pathway protein D	gspD	-	-	ko:K02453	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	Secretin,Secretin_N
DYD3_k127_6075690_7	1545915.JROG01000007_gene3095	5.261e-17	92.0	COG3031@1|root,COG3031@2|Bacteria,1RFDB@1224|Proteobacteria,2U64N@28211|Alphaproteobacteria,2K0SG@204457|Sphingomonadales	204457|Sphingomonadales	U	Type II secretory pathway component PulC	-	-	-	ko:K02452	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	PDZ_2,T2SSC
DYD3_k127_6075887_1	305700.B447_13614	1.723e-06	55.0	2DBI5@1|root,2Z9EN@2|Bacteria,1PMHG@1224|Proteobacteria,2VWH2@28216|Betaproteobacteria	28216|Betaproteobacteria	L	PDDEXK-like domain of unknown function (DUF3799)	-	-	-	ko:K10906	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DUF3799
DYD3_k127_6092273_12	670292.JH26_10020	3.682e-06	48.0	COG2801@1|root,COG2801@2|Bacteria,1MWNX@1224|Proteobacteria,2TZ7M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	LZ_Tnp_IS481,rve,rve_3
DYD3_k127_6092273_1	394221.Mmar10_1295	4.75e-131	432.0	COG4783@1|root,COG4783@2|Bacteria,1MVFV@1224|Proteobacteria,2TTV2@28211|Alphaproteobacteria,43WQI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Zn-dependent protease, contains TPR repeats	MA20_29180	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48,TPR_16,TPR_19
DYD3_k127_6092273_4	1121948.AUAC01000003_gene2664	5.321e-45	186.0	COG1651@1|root,COG1651@2|Bacteria,1MY3H@1224|Proteobacteria,2TTXR@28211|Alphaproteobacteria,43XUX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG1651 Protein-disulfide isomerase	dsbA	-	-	-	-	-	-	-	-	-	-	-	DSBA,Thioredoxin_4
DYD3_k127_6092273_2	1082931.KKY_3185	2.867e-92	321.0	2DMMC@1|root,32SDW@2|Bacteria,1R8P1@1224|Proteobacteria,2U0XW@28211|Alphaproteobacteria,3N7NG@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6092273_0	394221.Mmar10_1269	2.669e-145	462.0	COG2022@1|root,COG2022@2|Bacteria,1N0N5@1224|Proteobacteria,2TSXS@28211|Alphaproteobacteria,43WAV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S	thiG	-	2.8.1.10	ko:K03149	ko00730,ko01100,map00730,map01100	-	R10247	RC03096,RC03097,RC03461	ko00000,ko00001,ko01000	-	-	-	ThiG,ThiS
DYD3_k127_6092273_9	232348.ADXL01000014_gene730	9.205e-28	117.0	COG4634@1|root,COG4634@2|Bacteria,1G6S3@1117|Cyanobacteria,1H23Q@1129|Synechococcus	1117|Cyanobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6092273_10	278957.ABEA03000095_gene4585	3.584e-23	104.0	COG2442@1|root,COG2442@2|Bacteria	2|Bacteria	K	InterPro IPR007367	-	-	-	-	-	-	-	-	-	-	-	-	DUF433
DYD3_k127_6092273_11	1121106.JQKB01000014_gene5620	1.518e-17	83.0	COG2104@1|root,COG2104@2|Bacteria,1NG8E@1224|Proteobacteria,2UG5I@28211|Alphaproteobacteria,2JY1B@204441|Rhodospirillales	204441|Rhodospirillales	H	ThiS family	-	-	-	-	-	-	-	-	-	-	-	-	ThiS
DYD3_k127_6092273_3	991905.SL003B_2045	1.73e-56	200.0	COG0757@1|root,COG0757@2|Bacteria,1RDDT@1224|Proteobacteria,2U9BV@28211|Alphaproteobacteria,4BQH4@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes a trans-dehydration via an enolate intermediate	aroQ	-	4.2.1.10	ko:K03786	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03084	RC00848	ko00000,ko00001,ko00002,ko01000	-	-	-	DHquinase_II
DYD3_k127_6092273_7	1121948.AUAC01000002_gene1017	2.959e-38	153.0	COG0511@1|root,COG0511@2|Bacteria,1RCXA@1224|Proteobacteria,2U93Y@28211|Alphaproteobacteria,43XU6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA	accB	GO:0003674,GO:0003824,GO:0003989,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009305,GO:0009987,GO:0016049,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576	-	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742	RC00040,RC00367	ko00000,ko00001,ko00002	-	-	-	Biotin_lipoyl
DYD3_k127_6092273_6	394221.Mmar10_1265	8.448e-43	160.0	COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,2U25Z@28211|Alphaproteobacteria,43WUR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism	accC	GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
DYD3_k127_6092273_8	1122135.KB893146_gene1480	1.385e-33	136.0	COG1309@1|root,COG1309@2|Bacteria,1N1R7@1224|Proteobacteria,2UBVA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6092273_5	1238182.C882_3075	7.454e-44	169.0	COG0697@1|root,COG0697@2|Bacteria,1RI87@1224|Proteobacteria,2UAJW@28211|Alphaproteobacteria,2JYQA@204441|Rhodospirillales	204441|Rhodospirillales	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_6106397_9	935840.JAEQ01000014_gene3980	7.552e-12	68.0	COG3293@1|root,COG3293@2|Bacteria,1REED@1224|Proteobacteria,2U78B@28211|Alphaproteobacteria,43R0P@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	Putative transposase of IS4/5 family (DUF4096)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4096
DYD3_k127_6106397_2	991905.SL003B_1031	2.847e-107	372.0	COG0845@1|root,COG0845@2|Bacteria,1Q112@1224|Proteobacteria,2V906@28211|Alphaproteobacteria,4BSRF@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K02005	-	-	-	-	ko00000	-	-	-	HlyD_3
DYD3_k127_6106397_0	1207058.L53_15665	1.563e-246	785.0	COG0577@1|root,COG0577@2|Bacteria,1MW6D@1224|Proteobacteria,2TTJZ@28211|Alphaproteobacteria,43ZIX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	FtsX-like permease family	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_6106397_4	1238182.C882_0660	2.097e-100	344.0	COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,2VEU2@28211|Alphaproteobacteria,2JRM1@204441|Rhodospirillales	204441|Rhodospirillales	V	ATPases associated with a variety of cellular activities	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_6106397_8	234831.PSM_A2511	1.11e-32	134.0	COG2010@1|root,COG2010@2|Bacteria,1N5P8@1224|Proteobacteria,1S9K3@1236|Gammaproteobacteria,2Q4QR@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C
DYD3_k127_6106397_1	1188256.BASI01000001_gene577	1.172e-197	636.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TR7S@28211|Alphaproteobacteria,3FCUA@34008|Rhodovulum	28211|Alphaproteobacteria	I	Poly-beta-hydroxybutyrate polymerase N terminal	-	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	PHBC_N,PhaC_N
DYD3_k127_6106397_5	1385935.N836_20050	7.407e-99	342.0	COG1233@1|root,COG1233@2|Bacteria,1GCDS@1117|Cyanobacteria	1117|Cyanobacteria	Q	Flavin containing amine oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase
DYD3_k127_6106397_6	713586.KB900536_gene1531	1.015e-95	327.0	COG0517@1|root,COG1994@1|root,COG0517@2|Bacteria,COG1994@2|Bacteria,1MY9R@1224|Proteobacteria,1S28T@1236|Gammaproteobacteria,1WY61@135613|Chromatiales	135613|Chromatiales	S	Belongs to the peptidase M50B family	-	-	-	-	-	-	-	-	-	-	-	-	CBS,Peptidase_M50,Peptidase_M50B
DYD3_k127_6106397_10	316058.RPB_1696	0.0002045	50.0	2C2VC@1|root,32WXZ@2|Bacteria,1P2P1@1224|Proteobacteria,2UEI8@28211|Alphaproteobacteria,3K5D7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
DYD3_k127_6106397_3	745310.G432_09915	1.535e-106	355.0	COG3332@1|root,COG3332@2|Bacteria,1RDBS@1224|Proteobacteria,2TSN7@28211|Alphaproteobacteria,2K4A3@204457|Sphingomonadales	204457|Sphingomonadales	S	Transport and Golgi organisation 2	-	-	-	-	-	-	-	-	-	-	-	-	TANGO2
DYD3_k127_6106397_7	1121123.AUAO01000001_gene635	3.512e-43	164.0	COG4957@1|root,COG4957@2|Bacteria,1RGUW@1224|Proteobacteria,2U99M@28211|Alphaproteobacteria,2KGKZ@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	ROS_MUCR
DYD3_k127_6106560_4	935840.JAEQ01000014_gene3980	3.215e-12	68.0	COG3293@1|root,COG3293@2|Bacteria,1REED@1224|Proteobacteria,2U78B@28211|Alphaproteobacteria,43R0P@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	Putative transposase of IS4/5 family (DUF4096)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4096
DYD3_k127_6106560_1	1280948.HY36_15410	1.71e-139	467.0	COG1262@1|root,COG4249@1|root,COG1262@2|Bacteria,COG4249@2|Bacteria,1NQ5K@1224|Proteobacteria,2U2VJ@28211|Alphaproteobacteria,43ZFH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase,Peptidase_C14
DYD3_k127_6106560_2	287.DR97_287	2.154e-50	184.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,1S3RP@1236|Gammaproteobacteria,1YG6N@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	C	[2Fe-2S] binding domain	-	-	1.17.2.1,1.3.99.16	ko:K07302,ko:K18029	ko00760,ko01120,map00760,map01120	M00622	R09473	RC00589	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2,Fer2_2
DYD3_k127_6106560_0	441620.Mpop_0237	4.716e-144	490.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,1JUCF@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	PFAM aldehyde oxidase and xanthine dehydrogenase a b hammerhead	-	-	-	-	-	-	-	-	-	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
DYD3_k127_6106560_3	288000.BBta_2510	1.42e-14	78.0	COG0235@1|root,COG0235@2|Bacteria,1RE8T@1224|Proteobacteria,2U93H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P)	mtnB	-	4.2.1.109	ko:K08964	ko00270,ko01100,map00270,map01100	M00034	R07392	RC01939	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldolase_II
DYD3_k127_617905_4	1082931.KKY_100	1.227e-31	130.0	2CBAE@1|root,34691@2|Bacteria,1N1N6@1224|Proteobacteria,2UD3Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_617905_3	1082931.KKY_101	4.446e-50	186.0	2CBAE@1|root,32YK1@2|Bacteria,1N7NP@1224|Proteobacteria,2VCYT@28211|Alphaproteobacteria,3N96R@45401|Hyphomicrobiaceae	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_617905_5	1296990.H845_758	1.375e-07	53.0	COG3293@1|root,COG3293@2|Bacteria,1REEB@1224|Proteobacteria,2U74J@28211|Alphaproteobacteria,2JYDD@204441|Rhodospirillales	204441|Rhodospirillales	L	Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_2
DYD3_k127_6180700_5	887062.HGR_06056	2.436e-33	134.0	COG2329@1|root,COG2329@2|Bacteria,1N062@1224|Proteobacteria,2VUQE@28216|Betaproteobacteria,4AF6S@80864|Comamonadaceae	28216|Betaproteobacteria	S	enzyme involved in biosynthesis of extracellular polysaccharides	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_6180700_3	1449049.JONW01000005_gene1787	1.573e-71	252.0	COG2962@1|root,COG2962@2|Bacteria,1MX5G@1224|Proteobacteria,2TV8D@28211|Alphaproteobacteria,2KG4P@204458|Caulobacterales	204458|Caulobacterales	S	TIGRFAM RarD protein, DMT superfamily transporter	-	-	-	ko:K05786	-	-	-	-	ko00000,ko02000	2.A.7.7	-	-	EamA
DYD3_k127_6180700_2	394221.Mmar10_2878	1.335e-93	317.0	COG0596@1|root,COG0596@2|Bacteria,1N5ZI@1224|Proteobacteria,2TS7X@28211|Alphaproteobacteria,43XJW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	2.7.10.2,3.3.2.9	ko:K01253,ko:K08253	ko00980,ko04976,ko05204,map00980,map04976,map05204	-	R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443	RC01447,RC01728,RC01764,RC02528	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
DYD3_k127_6180700_4	1280947.HY30_12875	1.297e-58	223.0	COG0639@1|root,COG0639@2|Bacteria,1RD8M@1224|Proteobacteria,2UAGG@28211|Alphaproteobacteria,43XWN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases	pphA	-	3.1.3.16	ko:K07313	-	-	-	-	ko00000,ko01000	-	-	-	Metallophos
DYD3_k127_6180700_1	1382303.JPOM01000001_gene315	6.229e-118	391.0	COG1680@1|root,COG1680@2|Bacteria,1QD0J@1224|Proteobacteria,2U189@28211|Alphaproteobacteria,2KF70@204458|Caulobacterales	204458|Caulobacterales	V	PFAM Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_6180700_0	64471.sync_2679	6.279e-123	415.0	COG0154@1|root,COG0154@2|Bacteria,1G0HS@1117|Cyanobacteria,1GZCX@1129|Synechococcus	1117|Cyanobacteria	J	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	-	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
DYD3_k127_6184682_0	1040986.ATYO01000013_gene5109	7.893e-108	379.0	COG1475@1|root,COG1475@2|Bacteria,1MVF9@1224|Proteobacteria,2TR0P@28211|Alphaproteobacteria,43M0Q@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	ParB domain protein nuclease	-	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
DYD3_k127_6184682_1	366602.Caul_3808	4.285e-106	359.0	COG1475@1|root,COG1475@2|Bacteria,1MVF9@1224|Proteobacteria,2TR0P@28211|Alphaproteobacteria,2KEXJ@204458|Caulobacterales	204458|Caulobacterales	K	PFAM ParB domain protein nuclease	-	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
DYD3_k127_6199643_4	555793.WSK_1442	2.783e-12	78.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6199643_5	113395.AXAI01000010_gene2219	8.783e-10	70.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria,3K43P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6199643_3	555793.WSK_1442	3.032e-15	87.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6199643_6	555793.WSK_4186	1.04e-07	63.0	2C42J@1|root,336T0@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6199643_0	1122613.ATUP01000001_gene1814	2.179e-129	432.0	COG0564@1|root,COG0564@2|Bacteria,1MUBN@1224|Proteobacteria,2TSBK@28211|Alphaproteobacteria,43WF6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Responsible for synthesis of pseudouridine from uracil	rluD	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.23	ko:K06180	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_6199643_2	1121479.AUBS01000007_gene2208	5.477e-72	254.0	COG0598@1|root,COG0598@2|Bacteria,1MW8W@1224|Proteobacteria,2U20B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Mg2 transporter protein, CorA family protein	-	-	-	ko:K16074	-	-	-	-	ko00000,ko02000	1.A.35.4	-	-	CorA
DYD3_k127_6199643_1	1247963.JPHU01000002_gene2733	1.202e-90	315.0	COG3264@1|root,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,2TRKK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	mechanosensitive ion channel	kefA	-	-	ko:K05802	-	-	-	-	ko00000,ko02000	1.A.23.1.1	-	-	DUF3772,MS_channel
DYD3_k127_6209507_3	1144310.PMI07_004850	1.787e-94	318.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,4BIMP@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	-	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_6209507_0	314254.OA2633_00825	2.703e-187	595.0	COG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,2TT38@28211|Alphaproteobacteria,43WC7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	GTPase that plays an essential role in the late steps of ribosome biogenesis	der	-	-	ko:K03977	-	-	-	-	ko00000,ko03009	-	-	-	KH_dom-like,MMR_HSR1
DYD3_k127_6209507_1	1161401.ASJA01000019_gene1166	3.874e-135	443.0	COG1520@1|root,COG1520@2|Bacteria,1MXIJ@1224|Proteobacteria,2TUAD@28211|Alphaproteobacteria,43WVT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG1520 FOG WD40-like repeat	bamB	-	-	ko:K17713	-	-	-	-	ko00000,ko02000	1.B.33.1	-	-	PQQ_2,PQQ_3
DYD3_k127_6209507_4	1123503.KB908060_gene125	1.397e-33	148.0	COG4649@1|root,COG4649@2|Bacteria,1PSR3@1224|Proteobacteria,2V4U9@28211|Alphaproteobacteria,2KGIW@204458|Caulobacterales	204458|Caulobacterales	S	Tetratricopeptide repeat-like domain	-	-	-	-	-	-	-	-	-	-	-	-	TPR_21
DYD3_k127_6209507_2	1479238.JQMZ01000001_gene1015	1.857e-125	407.0	COG0413@1|root,COG0413@2|Bacteria,1MU3B@1224|Proteobacteria,2TQT1@28211|Alphaproteobacteria,43WN5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate	panB	-	2.1.2.11	ko:K00606	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R01226	RC00022,RC00200	ko00000,ko00001,ko00002,ko01000	-	-	-	Pantoate_transf
DYD3_k127_6231974_2	331869.BAL199_13413	6.652e-55	211.0	COG2370@1|root,COG2370@2|Bacteria,1N08F@1224|Proteobacteria,2U60P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	urease accessory protein	-	-	-	-	-	-	-	-	-	-	-	-	HupE_UreJ
DYD3_k127_6231974_0	1161401.ASJA01000008_gene1719	3.367e-210	668.0	COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,1MU9U@1224|Proteobacteria,2TRAU@28211|Alphaproteobacteria,43WVM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	nadE	-	6.3.1.5,6.3.5.1	ko:K01916,ko:K01950	ko00760,ko01100,map00760,map01100	M00115	R00189,R00257	RC00010,RC00100	ko00000,ko00001,ko00002,ko01000	-	-	-	CN_hydrolase,NAD_synthase
DYD3_k127_6231974_1	1161401.ASJA01000001_gene562	3.796e-160	556.0	COG0457@1|root,COG0457@2|Bacteria,1N0A9@1224|Proteobacteria,2TTMN@28211|Alphaproteobacteria,43XB8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_14,TPR_16,TPR_19,TPR_2,TPR_8
DYD3_k127_6251982_0	1163408.UU9_08792	2.29e-215	678.0	COG0065@1|root,COG0065@2|Bacteria,1MVYR@1224|Proteobacteria,1RMF6@1236|Gammaproteobacteria,1X3KZ@135614|Xanthomonadales	135614|Xanthomonadales	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	leuC	-	4.2.1.33,4.2.1.35	ko:K01703	ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170	RC00497,RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase
DYD3_k127_6251982_3	517722.AEUE01000010_gene549	1.579e-74	255.0	COG0066@1|root,COG0066@2|Bacteria,1MVXB@1224|Proteobacteria,2TRRS@28211|Alphaproteobacteria,2JZWQ@204457|Sphingomonadales	204457|Sphingomonadales	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	leuD	-	4.2.1.33,4.2.1.35	ko:K01704	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R10170	RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase_C
DYD3_k127_6251982_8	627192.SLG_36020	6.09e-40	151.0	COG0662@1|root,COG0662@2|Bacteria,1N71F@1224|Proteobacteria,2UFSH@28211|Alphaproteobacteria,2KBHV@204457|Sphingomonadales	204457|Sphingomonadales	G	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_6251982_2	317655.Sala_2790	4.529e-112	372.0	COG0454@1|root,COG0456@2|Bacteria,1NR07@1224|Proteobacteria	1224|Proteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_6251982_7	1218084.BBJK01000124_gene7016	6.505e-64	232.0	COG1309@1|root,COG1309@2|Bacteria,1RAHE@1224|Proteobacteria,2W325@28216|Betaproteobacteria,1K6BY@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6251982_5	450851.PHZ_c2266	4.551e-71	243.0	COG3631@1|root,COG3631@2|Bacteria,1RFJW@1224|Proteobacteria,2U8J7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL
DYD3_k127_6251982_1	1500893.JQNB01000001_gene1148	6.145e-123	408.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,1RMZQ@1236|Gammaproteobacteria,1X4UN@135614|Xanthomonadales	135614|Xanthomonadales	CE	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate	leuB	GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.85	ko:K00052	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R00994,R04426,R10052	RC00084,RC00417,RC03036	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
DYD3_k127_6251982_4	1121015.N789_13065	1.38e-73	258.0	COG0457@1|root,COG0457@2|Bacteria	1121015.N789_13065|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6251982_6	1121015.N789_13065	5.227e-68	242.0	COG0457@1|root,COG0457@2|Bacteria	1121015.N789_13065|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6251982_9	272942.RCAP_rcc02293	3.746e-11	66.0	COG5487@1|root,COG5487@2|Bacteria,1NGAH@1224|Proteobacteria,2UJIU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	UPF0391 membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1328
DYD3_k127_6272041_5	1382303.JPOM01000001_gene1482	2.977e-113	377.0	COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2TT2C@28211|Alphaproteobacteria,2KEZX@204458|Caulobacterales	204458|Caulobacterales	FP	Ppx GppA phosphatase	-	-	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230	-	R03409	RC00002	ko00000,ko00001,ko01000	-	-	-	Ppx-GppA
DYD3_k127_6272041_8	1161401.ASJA01000025_gene219	6.234e-87	297.0	COG0293@1|root,COG0293@2|Bacteria,1MW1C@1224|Proteobacteria,2TSBW@28211|Alphaproteobacteria,43XFF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit	ftsJ	-	2.1.1.166	ko:K02427	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	FtsJ
DYD3_k127_6272041_7	1007104.SUS17_2461	1.416e-89	310.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2TR47@28211|Alphaproteobacteria,2K0QG@204457|Sphingomonadales	204457|Sphingomonadales	G	glucose sorbosone	-	-	-	-	-	-	-	-	-	-	-	-	GSDH
DYD3_k127_6272041_1	1161401.ASJA01000025_gene218	8.09e-228	714.0	COG0516@1|root,COG0517@1|root,COG0516@2|Bacteria,COG0517@2|Bacteria,1MUJM@1224|Proteobacteria,2TQXC@28211|Alphaproteobacteria,43WG5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth	guaB	GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	1.1.1.205,1.7.1.7	ko:K00088,ko:K00364	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	M00050	R01130,R01134,R08240	RC00143,RC00457,RC02207	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	CBS,IMPDH,NMO
DYD3_k127_6272041_17	394221.Mmar10_1176	8.066e-31	128.0	COG5331@1|root,COG5331@2|Bacteria,1N7DJ@1224|Proteobacteria,2U7D2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
DYD3_k127_6272041_14	76636.JOEC01000001_gene623	1.003e-33	135.0	COG3818@1|root,COG3818@2|Bacteria,2GRQA@201174|Actinobacteria,4FPXC@85023|Microbacteriaceae	201174|Actinobacteria	S	Acetyltransferase (GNAT) family	-	-	-	ko:K06977	-	-	-	-	ko00000	-	-	-	Acetyltransf_1
DYD3_k127_6272041_13	1000565.METUNv1_01952	1.159e-35	142.0	COG3744@1|root,COG3744@2|Bacteria,1N2T0@1224|Proteobacteria,2VTSR@28216|Betaproteobacteria,2KWN4@206389|Rhodocyclales	206389|Rhodocyclales	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_6272041_21	380394.Lferr_0577	5.958e-21	94.0	COG4118@1|root,COG4118@2|Bacteria,1PY3T@1224|Proteobacteria,1SRP5@1236|Gammaproteobacteria,2NDF1@225057|Acidithiobacillales	225057|Acidithiobacillales	D	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_6272041_3	450851.PHZ_c1416	7.322e-162	520.0	COG0144@1|root,COG0144@2|Bacteria,1MV2Q@1224|Proteobacteria,2TS6U@28211|Alphaproteobacteria,2KG4F@204458|Caulobacterales	204458|Caulobacterales	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family	-	-	2.1.1.176	ko:K03500	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltr_RsmB-F
DYD3_k127_6272041_18	118166.JH976537_gene3317	8.112e-28	127.0	COG3795@1|root,COG3795@2|Bacteria,1G6M3@1117|Cyanobacteria,1HFTK@1150|Oscillatoriales	1117|Cyanobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
DYD3_k127_6272041_20	1297570.MESS4_160047	5.759e-24	115.0	COG3795@1|root,COG3795@2|Bacteria,1N4SY@1224|Proteobacteria,2UBTF@28211|Alphaproteobacteria,43PVA@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
DYD3_k127_6272041_4	1449063.JMLS01000009_gene2283	6.156e-123	422.0	COG4941@1|root,COG4941@2|Bacteria,1TR3S@1239|Firmicutes,4HES7@91061|Bacilli,26W2J@186822|Paenibacillaceae	91061|Bacilli	K	TIGRFAM RNA polymerase sigma factor, sigma-70 family	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2
DYD3_k127_6272041_0	1161401.ASJA01000025_gene214	3.904e-272	843.0	COG0519@1|root,COG0519@2|Bacteria,1MU2A@1224|Proteobacteria,2TRN0@28211|Alphaproteobacteria,43X30@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the synthesis of GMP from XMP	guaA	GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase,GMP_synt_C,NAD_synthase
DYD3_k127_6272041_19	266265.Bxe_C0680	8.355e-28	115.0	COG2161@1|root,COG2161@2|Bacteria,1N8EM@1224|Proteobacteria,2VUQY@28216|Betaproteobacteria,1K9QE@119060|Burkholderiaceae	28216|Betaproteobacteria	D	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_6272041_11	748658.KB907312_gene1446	8.303e-49	179.0	COG1487@1|root,COG1487@2|Bacteria,1RIB5@1224|Proteobacteria,1S4KB@1236|Gammaproteobacteria,1WZJ9@135613|Chromatiales	135613|Chromatiales	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	-	-	-	ko:K07062	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PIN
DYD3_k127_6272041_22	1415756.JQMY01000001_gene2598	4.554e-20	92.0	COG0519@1|root,COG0519@2|Bacteria,1MU2A@1224|Proteobacteria,2TRN0@28211|Alphaproteobacteria,2PCIN@252301|Oceanicola	28211|Alphaproteobacteria	F	Catalyzes the synthesis of GMP from XMP	guaA	GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase,GMP_synt_C,NAD_synthase
DYD3_k127_6272041_6	388399.SSE37_11964	2.835e-105	359.0	COG3182@1|root,COG3182@2|Bacteria,1QWJM@1224|Proteobacteria,2U9PR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PFAM PepSY-associated TM helix domain protein	-	-	1.8.1.2	ko:K00380	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R00858	RC00065	ko00000,ko00001,ko00002,ko01000	-	-	-	PepSY_TM
DYD3_k127_6272041_15	1038867.AXAY01000011_gene5485	1.309e-32	131.0	2ETU4@1|root,33MBG@2|Bacteria,1NFJX@1224|Proteobacteria,2UI48@28211|Alphaproteobacteria,3K463@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN_2
DYD3_k127_6272041_16	190650.CC_2771	4.322e-32	129.0	COG1396@1|root,COG1396@2|Bacteria,1QUPK@1224|Proteobacteria,2TW3E@28211|Alphaproteobacteria,2KJCY@204458|Caulobacterales	204458|Caulobacterales	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_6272041_2	69395.JQLZ01000003_gene138	8.113e-203	639.0	COG3550@1|root,COG3550@2|Bacteria,1N458@1224|Proteobacteria,2TUX1@28211|Alphaproteobacteria,2KHKJ@204458|Caulobacterales	204458|Caulobacterales	S	Pfam:HipA_N	-	-	2.7.11.1	ko:K07154	-	-	-	-	ko00000,ko01000,ko01001,ko02048	-	-	-	Couple_hipA,HipA_C
DYD3_k127_6272041_9	296591.Bpro_2442	3.369e-61	216.0	COG1514@1|root,COG1514@2|Bacteria,1RI9Z@1224|Proteobacteria,2VSCQ@28216|Betaproteobacteria,4AEWD@80864|Comamonadaceae	28216|Betaproteobacteria	J	2'-5' RNA ligase superfamily	-	-	3.1.4.58	ko:K01975	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	2_5_RNA_ligase2,LigT_PEase
DYD3_k127_6272041_10	1254432.SCE1572_23905	4.368e-52	186.0	COG0346@1|root,COG0346@2|Bacteria,1RI3Q@1224|Proteobacteria,43DXJ@68525|delta/epsilon subdivisions,2WZ51@28221|Deltaproteobacteria,2Z1CE@29|Myxococcales	28221|Deltaproteobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6272041_12	1245469.S58_42400	7.566e-48	184.0	COG1393@1|root,COG1393@2|Bacteria,1MZ6S@1224|Proteobacteria,2U98B@28211|Alphaproteobacteria,3JYSH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ArsC family	MA20_27840	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	-	ArsC
DYD3_k127_6272041_23	1229204.AMYY01000022_gene1679	4.648e-12	76.0	2EWWP@1|root,33Q83@2|Bacteria,1NTPD@1224|Proteobacteria,2UPR8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,Porin_4
DYD3_k127_6283344_0	1035191.HMPREF0185_01635	4.37e-36	142.0	COG1595@1|root,COG1595@2|Bacteria,1N2ET@1224|Proteobacteria,2UCQI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	-	-	-	-	-	-	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_6283344_2	1037409.BJ6T_57040	0.0007768	49.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,3JTJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4214,HCBP_related,HemolysinCabind,P_proprotein,Peptidase_S8
DYD3_k127_6294665_2	627192.SLG_02620	2.615e-155	500.0	COG0620@1|root,COG0620@2|Bacteria,1MV2Z@1224|Proteobacteria,2TSRH@28211|Alphaproteobacteria,2K9SZ@204457|Sphingomonadales	204457|Sphingomonadales	E	Cobalamin-independent synthase, Catalytic domain	-	-	2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	Meth_synt_2
DYD3_k127_6294665_0	1192124.LIG30_2665	9.038e-181	589.0	COG0045@1|root,COG1042@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2VI9R@28216|Betaproteobacteria,1K035@119060|Burkholderiaceae	28216|Betaproteobacteria	C	CoA-binding domain protein	-	-	-	-	-	-	-	-	-	-	-	-	ATP-grasp_5,Acetyltransf_1,Acetyltransf_3,Acetyltransf_4,CoA_binding_2,Succ_CoA_lig
DYD3_k127_6294665_3	1217720.ALOX01000087_gene3041	1.229e-148	488.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2JPCT@204441|Rhodospirillales	204441|Rhodospirillales	IQ	AMP-binding enzyme C-terminal domain	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_6294665_1	1122201.AUAZ01000046_gene2156	4.078e-159	524.0	COG0183@1|root,COG0183@2|Bacteria,1MXYM@1224|Proteobacteria,1S0V9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Belongs to the thiolase family	-	-	-	-	-	-	-	-	-	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_6294665_9	1120999.JONM01000022_gene3306	8.368e-10	65.0	2FI1A@1|root,349U7@2|Bacteria,1P0JY@1224|Proteobacteria,2W4G8@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6294665_8	1333998.M2A_0969	6.266e-22	101.0	COG5455@1|root,COG5455@2|Bacteria,1N3PU@1224|Proteobacteria,2UGK9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	response to cobalt ion	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6294665_6	627192.SLG_31280	1.353e-54	194.0	COG4341@1|root,COG4341@2|Bacteria,1RAX5@1224|Proteobacteria,2U5RV@28211|Alphaproteobacteria,2KAD4@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6294665_4	627192.SLG_26390	1.594e-133	462.0	COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1QU0Y@1224|Proteobacteria,2TW5W@28211|Alphaproteobacteria,2KEBP@204457|Sphingomonadales	204457|Sphingomonadales	HP	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_6294665_7	1041142.ATTP01000011_gene1067	1.003e-37	149.0	COG1846@1|root,COG1846@2|Bacteria,1N5PV@1224|Proteobacteria,2UE9H@28211|Alphaproteobacteria,4BE6B@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_6294665_5	1196835.A458_20855	8.958e-91	309.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,1RMZ8@1236|Gammaproteobacteria,1Z1XI@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	-	-	1.1.1.35	ko:K07516	ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212	M00087	R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
DYD3_k127_6298106_19	1161401.ASJA01000007_gene2108	0.0005555	44.0	COG2919@1|root,COG2919@2|Bacteria,1NGSW@1224|Proteobacteria,2UJYE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	Septum formation initiator	-	-	-	-	-	-	-	-	-	-	-	-	DivIC
DYD3_k127_6298106_18	1219035.NT2_10_00370	1.022e-05	57.0	COG4625@1|root,COG4625@2|Bacteria,1N4H5@1224|Proteobacteria,2TT5A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	outer membrane autotransporter barrel	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6298106_1	59538.XP_005968341.1	5.773e-200	630.0	COG0148@1|root,KOG2670@2759|Eukaryota,38C66@33154|Opisthokonta,3BE2S@33208|Metazoa,3CU4G@33213|Bilateria,480BN@7711|Chordata,48V1P@7742|Vertebrata,3J8GJ@40674|Mammalia,4IXIP@91561|Cetartiodactyla	33208|Metazoa	G	enolase 2	enol-1	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	4.2.1.11	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	M00001,M00002,M00003,M00346,M00394	R00658	RC00349	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	-	-	-	Enolase_C,Enolase_N
DYD3_k127_6298106_8	1280949.HAD_07190	9.868e-68	240.0	28HK0@1|root,2Z7V0@2|Bacteria,1MXSJ@1224|Proteobacteria,2TSDQ@28211|Alphaproteobacteria,43YQB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4105)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4105
DYD3_k127_6298106_3	1479238.JQMZ01000001_gene956	7.46e-117	389.0	COG1524@1|root,COG1524@2|Bacteria,1N5SF@1224|Proteobacteria,2TU7V@28211|Alphaproteobacteria,43WUB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Type I phosphodiesterase / nucleotide pyrophosphatase	-	-	3.1.3.1	ko:K01113	ko00790,ko01100,ko02020,map00790,map01100,map02020	M00126	R04620	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Phosphodiest
DYD3_k127_6298106_14	1035191.HMPREF0185_03315	4.206e-26	109.0	COG0333@1|root,COG0333@2|Bacteria,1PU3Y@1224|Proteobacteria,2UF54@28211|Alphaproteobacteria,2KHBQ@204458|Caulobacterales	204458|Caulobacterales	J	Belongs to the bacterial ribosomal protein bL32 family	rpmF	-	-	ko:K02911	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_L32p
DYD3_k127_6298106_17	864069.MicloDRAFT_00057010	9.479e-09	62.0	2CBFC@1|root,32RYI@2|Bacteria,1N0T4@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6298106_0	394221.Mmar10_1408	1.332e-277	860.0	COG0504@1|root,COG0504@2|Bacteria,1MUIT@1224|Proteobacteria,2TS4Y@28211|Alphaproteobacteria,43WFP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates	pyrG	-	6.3.4.2	ko:K01937	ko00240,ko01100,map00240,map01100	M00052	R00571,R00573	RC00010,RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_synth_N,GATase
DYD3_k127_6298106_15	1430440.MGMSRv2_0959	4.498e-21	98.0	COG1314@1|root,COG1314@2|Bacteria,1N8MF@1224|Proteobacteria,2UCIP@28211|Alphaproteobacteria,2JU8U@204441|Rhodospirillales	204441|Rhodospirillales	U	Preprotein translocase subunit SecG	secG	-	-	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecG
DYD3_k127_6298106_11	394221.Mmar10_1406	1.005e-48	187.0	COG2199@1|root,COG3706@2|Bacteria,1NCGI@1224|Proteobacteria,2TXU2@28211|Alphaproteobacteria,43Z9U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6298106_7	588932.JHOF01000018_gene1049	1.312e-74	259.0	COG0149@1|root,COG0149@2|Bacteria,1MWK5@1224|Proteobacteria,2TS6I@28211|Alphaproteobacteria,2KFU7@204458|Caulobacterales	204458|Caulobacterales	G	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	tpiA	-	5.3.1.1	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01015	RC00423	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	TIM
DYD3_k127_6298106_9	1247963.JPHU01000013_gene648	1.941e-63	242.0	COG0760@1|root,COG0760@2|Bacteria,1MWV0@1224|Proteobacteria,2TRYU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Peptidylprolyl isomerase	ppiD	-	5.2.1.8	ko:K01802,ko:K03770	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase_2,SurA_N_3
DYD3_k127_6298106_2	1125973.JNLC01000017_gene3570	6.275e-174	568.0	COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,2TRWB@28211|Alphaproteobacteria,3JU3J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Anthranilate synthase component I	trpE	-	4.1.3.27	ko:K01657,ko:K13503	ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986	RC00010,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	Anth_synt_I_N,Chorismate_bind,GATase
DYD3_k127_6298106_10	366602.Caul_1136	4.942e-62	241.0	COG1629@1|root,COG4771@2|Bacteria,1MWKN@1224|Proteobacteria,2U3JH@28211|Alphaproteobacteria,2KK80@204458|Caulobacterales	204458|Caulobacterales	M	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_6298106_12	394221.Mmar10_1402	2.732e-47	182.0	COG2861@1|root,COG2861@2|Bacteria,1N3JP@1224|Proteobacteria,2TUFD@28211|Alphaproteobacteria,43ZVG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Divergent polysaccharide deacetylase	-	-	-	ko:K09798	-	-	-	-	ko00000	-	-	-	Polysacc_deac_2
DYD3_k127_6298106_6	394221.Mmar10_1401	2.479e-89	299.0	COG0512@1|root,COG0512@2|Bacteria,1MV5Y@1224|Proteobacteria,2TU3N@28211|Alphaproteobacteria,43XHM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EH	COG0512 Anthranilate para-aminobenzoate synthases component II	trpG	-	2.6.1.85,4.1.3.27	ko:K01658,ko:K01664	ko00400,ko00405,ko00790,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map00790,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986,R01716	RC00010,RC01418,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase
DYD3_k127_6298106_4	1238182.C882_4140	9.766e-100	347.0	COG0547@1|root,COG0547@2|Bacteria,1MUPV@1224|Proteobacteria,2TR8S@28211|Alphaproteobacteria,2JQYM@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)	trpD	-	2.4.2.18,4.1.3.27	ko:K00766,ko:K13497	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R00985,R00986,R01073	RC00010,RC00440,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase,Glycos_trans_3N,Glycos_transf_3
DYD3_k127_6298106_5	1292034.OR37_00184	1.305e-93	315.0	COG0134@1|root,COG0134@2|Bacteria,1MW5K@1224|Proteobacteria,2TSZE@28211|Alphaproteobacteria,2KFCQ@204458|Caulobacterales	204458|Caulobacterales	E	Belongs to the TrpC family	trpC	-	4.1.1.48	ko:K01609	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03508	RC00944	ko00000,ko00001,ko00002,ko01000	-	-	-	IGPS
DYD3_k127_6298106_13	1282876.BAOK01000001_gene2198	1.255e-32	130.0	COG1974@1|root,COG1974@2|Bacteria,1MW80@1224|Proteobacteria,2TT7W@28211|Alphaproteobacteria,4BPZI@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	lexA	GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141	3.4.21.88	ko:K01356	-	M00729	-	-	ko00000,ko00002,ko01000,ko01002,ko03400	-	-	-	LexA_DNA_bind,Peptidase_S24
DYD3_k127_6298106_16	570952.ATVH01000013_gene2962	2.376e-11	66.0	COG0127@1|root,COG0127@2|Bacteria,1MUK5@1224|Proteobacteria,2TV4B@28211|Alphaproteobacteria,2JRRX@204441|Rhodospirillales	204441|Rhodospirillales	F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions	rdgB	-	3.6.1.66	ko:K02428	ko00230,map00230	-	R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000	-	-	-	Ham1p_like
DYD3_k127_6391835_6	1123503.KB908056_gene1532	2.653e-54	201.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TS8E@28211|Alphaproteobacteria,2KF7U@204458|Caulobacterales	204458|Caulobacterales	I	3-hydroxyacyl-CoA dehydrogenase	-	-	1.1.1.35,4.2.1.17,5.1.2.3	ko:K01782	ko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212	M00032,M00087	R01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094	RC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
DYD3_k127_6391835_9	394221.Mmar10_0541	4.228e-35	141.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,4404S@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
DYD3_k127_6391835_1	1161401.ASJA01000010_gene1477	9.337e-217	679.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TS1R@28211|Alphaproteobacteria,43WRV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation	fadA	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_6391835_7	911045.PSE_1731	2.848e-54	197.0	COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,2TR9W@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Belongs to the GST superfamily	MA20_04615	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
DYD3_k127_6391835_2	1123503.KB908056_gene1535	7.426e-179	578.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,2KF2X@204458|Caulobacterales	204458|Caulobacterales	C	PFAM acyl-CoA dehydrogenase domain protein	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_6391835_0	1161401.ASJA01000010_gene1480	9.474e-277	863.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQJS@28211|Alphaproteobacteria,43WPG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_19860	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N
DYD3_k127_6391835_8	314254.OA2633_06094	3.432e-39	153.0	COG0789@1|root,COG0789@2|Bacteria,1RITY@1224|Proteobacteria,2U98M@28211|Alphaproteobacteria,44117@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	helix_turn_helix, mercury resistance	-	-	-	-	-	-	-	-	-	-	-	-	MerR-DNA-bind,MerR_1
DYD3_k127_6391835_3	1161401.ASJA01000003_gene2801	6.733e-127	449.0	COG0790@1|root,COG1196@1|root,COG3409@1|root,COG0790@2|Bacteria,COG1196@2|Bacteria,COG3409@2|Bacteria,1MWPA@1224|Proteobacteria,2TR2B@28211|Alphaproteobacteria,43WRT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	DM	localization factor protein PodJ	-	-	-	ko:K07126,ko:K13582	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	PG_binding_1,Sel1
DYD3_k127_6391835_4	1123503.KB908056_gene1540	6.926e-109	361.0	COG0730@1|root,COG0730@2|Bacteria,1MWX2@1224|Proteobacteria,2TRIC@28211|Alphaproteobacteria,2KF93@204458|Caulobacterales	204458|Caulobacterales	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
DYD3_k127_6391835_5	1161401.ASJA01000003_gene2799	6.657e-59	225.0	2AFUA@1|root,315WQ@2|Bacteria,1NHGB@1224|Proteobacteria,2TQWW@28211|Alphaproteobacteria,43ZW8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Putative transmembrane protein (Alph_Pro_TM)	MA20_19830	-	-	-	-	-	-	-	-	-	-	-	Alph_Pro_TM
DYD3_k127_6404177_4	1280948.HY36_07700	3.254e-171	546.0	COG0520@1|root,COG0520@2|Bacteria,1MUPD@1224|Proteobacteria,2TRNY@28211|Alphaproteobacteria,43WTZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family	sufS	-	2.8.1.7,4.4.1.16	ko:K11717	ko00450,ko01100,map00450,map01100	-	R03599,R11528	RC00961,RC01789,RC02313	ko00000,ko00001,ko01000	-	-	-	Aminotran_5
DYD3_k127_6404177_10	1411123.JQNH01000001_gene1049	4.599e-50	183.0	COG2151@1|root,COG2151@2|Bacteria,1MZ9Y@1224|Proteobacteria,2U72U@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	FeS assembly SUF system protein	MA20_30700	-	-	-	-	-	-	-	-	-	-	-	FeS_assembly_P
DYD3_k127_6404177_11	1121949.AQXT01000002_gene769	1.385e-49	184.0	COG0316@1|root,COG0316@2|Bacteria,1RH6T@1224|Proteobacteria,2UBWJ@28211|Alphaproteobacteria,43XVC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Belongs to the HesB IscA family	iscA	GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0031163,GO:0031974,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	-	ko:K13628	-	-	-	-	ko00000,ko03016	-	-	-	Fe-S_biosyn
DYD3_k127_6404177_12	1280954.HPO_10782	1.048e-28	124.0	COG3070@1|root,COG3070@2|Bacteria,1N8X8@1224|Proteobacteria,2UFNC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	regulator of competence-specific genes	MA20_30690	-	-	ko:K07343	-	-	-	-	ko00000	-	-	-	TfoX_N
DYD3_k127_6404177_7	1479238.JQMZ01000001_gene1664	7.005e-77	271.0	COG2199@1|root,COG3706@2|Bacteria,1NC00@1224|Proteobacteria,2TU9T@28211|Alphaproteobacteria,43XHZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG2199 FOG GGDEF domain	MA20_30680	-	2.7.7.65	ko:K07216,ko:K13590	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000	-	-	-	GGDEF
DYD3_k127_6404177_5	1411123.JQNH01000001_gene2015	1.345e-159	520.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,2TR6Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Belongs to the DEAD box helicase family	rhlE	-	3.6.4.13	ko:K03732,ko:K11927	ko03018,map03018	M00394	-	-	ko00000,ko00001,ko00002,ko01000,ko03019	-	-	-	DEAD,Helicase_C
DYD3_k127_6404177_6	394221.Mmar10_1325	1.532e-86	318.0	COG1228@1|root,COG1228@2|Bacteria,1MXQX@1224|Proteobacteria,2U1V8@28211|Alphaproteobacteria,43W9D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	overlaps another CDS with the same product name	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1,Amidohydro_3
DYD3_k127_6404177_2	1123503.KB908061_gene562	5.092e-206	651.0	COG1228@1|root,COG1228@2|Bacteria,1MXXR@1224|Proteobacteria,2TUMS@28211|Alphaproteobacteria,2KFWI@204458|Caulobacterales	204458|Caulobacterales	Q	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1,Amidohydro_3
DYD3_k127_6404177_0	1161401.ASJA01000007_gene2039	7.969e-305	948.0	COG0187@1|root,COG0187@2|Bacteria,1MVH1@1224|Proteobacteria,2TQZV@28211|Alphaproteobacteria,43WFN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	parE	-	-	ko:K02622	-	-	-	-	ko00000,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
DYD3_k127_6404177_9	314254.OA2633_03151	2.53e-60	216.0	COG4764@1|root,COG4764@2|Bacteria,1MVRK@1224|Proteobacteria,2TRJD@28211|Alphaproteobacteria,43YU1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	SLT
DYD3_k127_6404177_3	394221.Mmar10_1329	5.126e-184	619.0	COG4625@1|root,COG4625@2|Bacteria,1N0PT@1224|Proteobacteria,2TTFH@28211|Alphaproteobacteria,43WEJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter
DYD3_k127_6404177_1	1267005.KB911260_gene3476	5.817e-216	678.0	COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TSCR@28211|Alphaproteobacteria,3N6E8@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	E	glutamine synthetase	glnA	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C,Gln-synt_N
DYD3_k127_6404177_8	1479238.JQMZ01000001_gene2218	5.611e-73	253.0	2DQY9@1|root,339CR@2|Bacteria,1NR8Y@1224|Proteobacteria,2U152@28211|Alphaproteobacteria,43Y22@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (Gcw_chp)	-	-	-	-	-	-	-	-	-	-	-	-	Gcw_chp
DYD3_k127_6413797_0	587753.EY04_16710	1.406e-136	463.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,1RMD2@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate	alkJ	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_6413797_4	1429916.X566_23710	4.979e-58	228.0	COG2227@1|root,COG2227@2|Bacteria,1QUNV@1224|Proteobacteria,2TW2B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23,Methyltransf_25
DYD3_k127_6413797_2	1479239.JQMU01000001_gene1555	1.925e-93	322.0	COG3386@1|root,COG3386@2|Bacteria,1MVQM@1224|Proteobacteria,2U3TF@28211|Alphaproteobacteria,2K5IS@204457|Sphingomonadales	204457|Sphingomonadales	G	SMP-30/Gluconolaconase/LRE-like region	-	-	-	-	-	-	-	-	-	-	-	-	SGL
DYD3_k127_6413797_5	627192.SLG_20110	3.005e-37	154.0	COG0599@1|root,COG0599@2|Bacteria,1RJU6@1224|Proteobacteria,2U5JQ@28211|Alphaproteobacteria,2K5PT@204457|Sphingomonadales	204457|Sphingomonadales	S	Carboxymuconolactone decarboxylase family	-	-	4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03470	RC00938	ko00000,ko00001,ko01000	-	-	-	CMD
DYD3_k127_6413797_3	1380394.JADL01000002_gene1282	5.77e-79	273.0	COG2084@1|root,COG2084@2|Bacteria,1MWR4@1224|Proteobacteria,2U157@28211|Alphaproteobacteria,2JS1V@204441|Rhodospirillales	204441|Rhodospirillales	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_11,NAD_binding_2
DYD3_k127_6413797_1	1380394.JADL01000002_gene1281	6.345e-102	339.0	COG0491@1|root,COG0491@2|Bacteria,1MUT2@1224|Proteobacteria,2TRG9@28211|Alphaproteobacteria,2JQV5@204441|Rhodospirillales	204441|Rhodospirillales	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6416237_0	1535287.JP74_19105	5.812e-173	554.0	COG1038@1|root,COG1038@2|Bacteria,1NW9R@1224|Proteobacteria,2TQXU@28211|Alphaproteobacteria,3N8AR@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second	pyc	-	6.4.1.1	ko:K01958	ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230	M00173	R00344	RC00040,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,HMGL-like,PYC_OADA
DYD3_k127_6416237_3	1120705.FG95_01563	1.113e-94	325.0	COG4262@1|root,COG4262@2|Bacteria,1P1G3@1224|Proteobacteria,2TQSR@28211|Alphaproteobacteria,2K07Q@204457|Sphingomonadales	204457|Sphingomonadales	S	Spermidine synthase	-	-	-	-	-	-	-	-	-	-	-	-	Spermine_synth
DYD3_k127_6416237_2	627192.SLG_26300	1.269e-102	346.0	2EVK9@1|root,33P0C@2|Bacteria,1P9RH@1224|Proteobacteria,2UVJR@28211|Alphaproteobacteria,2KE01@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6416237_1	627192.SLG_26300	7.72e-106	355.0	2EVK9@1|root,33P0C@2|Bacteria,1P9RH@1224|Proteobacteria,2UVJR@28211|Alphaproteobacteria,2KE01@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6416237_4	522306.CAP2UW1_0178	3.204e-51	187.0	COG3812@1|root,COG3812@2|Bacteria,1RGUV@1224|Proteobacteria,2WA8Z@28216|Betaproteobacteria,1KR5A@119066|unclassified Betaproteobacteria	28216|Betaproteobacteria	S	Domain of unknown function (DUF1993)	-	-	-	ko:K09983	-	-	-	-	ko00000	-	-	-	DUF1993
DYD3_k127_6416237_5	1502851.FG93_04365	6.832e-51	191.0	COG3795@1|root,COG3795@2|Bacteria,1RCZT@1224|Proteobacteria,2U735@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
DYD3_k127_6416237_6	1166018.FAES_5043	1.984e-24	113.0	COG0500@1|root,COG2226@2|Bacteria,4NFRD@976|Bacteroidetes,47MKY@768503|Cytophagia	976|Bacteroidetes	Q	Putative methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_644076_0	627192.SLG_34920	1.52e-141	491.0	COG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,2UNZR@28211|Alphaproteobacteria,2KECI@204457|Sphingomonadales	204457|Sphingomonadales	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_644076_2	627192.SLG_09880	1.32e-34	149.0	28MSC@1|root,2ZB0S@2|Bacteria,1NG2A@1224|Proteobacteria,2VG0A@28211|Alphaproteobacteria,2KBBC@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_644076_3	555793.WSK_3236	3.747e-20	104.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria,2KBI7@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_644076_1	627192.SLG_31390	4.845e-121	407.0	COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,2UA2F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	ankyrin repeat	-	-	-	ko:K15503	-	-	-	-	ko00000,ko01009,ko03400	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5
DYD3_k127_6467524_2	1144310.PMI07_004850	6.539e-70	244.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,4BIMP@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	-	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_6467524_3	1211115.ALIQ01000021_gene4542	4.192e-69	243.0	COG1028@1|root,COG1028@2|Bacteria,1MWBC@1224|Proteobacteria,2TTQS@28211|Alphaproteobacteria,3NA6N@45404|Beijerinckiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_27940	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_6467524_0	1292034.OR37_00053	2.019e-201	640.0	COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,2TR8V@28211|Alphaproteobacteria,2KFPK@204458|Caulobacterales	204458|Caulobacterales	F	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine	purF	-	2.4.2.14	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048	R01072	RC00010,RC02724,RC02752	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase_7,Pribosyltran
DYD3_k127_6467524_5	450851.PHZ_c1540	2.117e-24	109.0	COG1286@1|root,COG1286@2|Bacteria,1N80D@1224|Proteobacteria,2VA4E@28211|Alphaproteobacteria,2KH5A@204458|Caulobacterales	204458|Caulobacterales	S	PFAM Colicin V production protein	-	-	-	ko:K03558	-	-	-	-	ko00000	-	-	-	Colicin_V
DYD3_k127_6467524_1	1161401.ASJA01000019_gene1161	4.008e-195	621.0	COG1066@1|root,COG1066@2|Bacteria,1MUJQ@1224|Proteobacteria,2TS6F@28211|Alphaproteobacteria,43WIH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function	radA	-	-	ko:K04485	-	-	-	-	ko00000,ko03400	-	-	-	AAA_25,ATPase,ChlI
DYD3_k127_6467524_4	1121022.ABENE_20895	8.663e-34	141.0	COG4200@1|root,COG4200@2|Bacteria,1MYGC@1224|Proteobacteria,2UEYC@28211|Alphaproteobacteria,2KI4V@204458|Caulobacterales	204458|Caulobacterales	S	ABC-2 family transporter protein	-	-	-	ko:K20461	ko02010,map02010	M00813	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.124.3,3.A.1.124.4,3.A.1.124.5	-	-	ABC2_membrane_4
DYD3_k127_6508209_1	1038859.AXAU01000011_gene2412	7.057e-37	147.0	2EH8B@1|root,33B05@2|Bacteria,1NQEC@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6508209_4	1088721.NSU_2574	2.061e-07	59.0	2C7KN@1|root,336M6@2|Bacteria,1N4WC@1224|Proteobacteria,2UF7X@28211|Alphaproteobacteria,2K6DP@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6508209_0	1123503.KB908056_gene1875	3.745e-235	734.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TRN7@28211|Alphaproteobacteria,2KG5Y@204458|Caulobacterales	204458|Caulobacterales	C	Dehydrogenase	-	-	1.8.1.4	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Pyr_redox_2,Pyr_redox_dim
DYD3_k127_6508209_3	627192.SLG_36720	4.776e-12	73.0	COG4319@1|root,COG4319@2|Bacteria,1QUR3@1224|Proteobacteria,2TW48@28211|Alphaproteobacteria,2K85Y@204457|Sphingomonadales	204457|Sphingomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_6515489_1	1040989.AWZU01000027_gene3132	3.938e-126	413.0	COG4962@1|root,COG4962@2|Bacteria,1R7EN@1224|Proteobacteria,2TTUS@28211|Alphaproteobacteria,3JV8Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type IV secretion-system coupling protein DNA-binding domain	-	-	-	ko:K20527	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	T2SSE
DYD3_k127_6515489_4	288000.BBta_7743	6.766e-44	169.0	COG5268@1|root,COG5268@2|Bacteria,1MZ8D@1224|Proteobacteria,2UBWQ@28211|Alphaproteobacteria,3K0CC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type IV secretory pathway, VirB3-like protein	-	-	-	ko:K20529	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	VirB3
DYD3_k127_6515489_0	314260.PB2503_03592	0.0	1094.0	COG3451@1|root,COG3451@2|Bacteria,1MXH0@1224|Proteobacteria,2TR1U@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	type IV secretion	-	-	-	ko:K20530	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	CagE_TrbE_VirB
DYD3_k127_6515489_3	1123279.ATUS01000004_gene2967	2.263e-46	176.0	COG5314@1|root,COG5314@2|Bacteria,1MW5A@1224|Proteobacteria,1RRXJ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	U	transfer protein trbJ	trbJ	-	-	ko:K20266	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	DUF4141
DYD3_k127_6515489_2	314260.PB2503_03582	1.542e-119	390.0	COG3846@1|root,COG3846@2|Bacteria,1MVFD@1224|Proteobacteria,2TSHU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	transfer protein trbL	-	-	-	ko:K07344	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	TrbL
DYD3_k127_6539309_10	1282360.ABAC460_05715	8.585e-08	54.0	COG1536@1|root,COG1536@2|Bacteria,1MV9X@1224|Proteobacteria,2TRIV@28211|Alphaproteobacteria,2KF0X@204458|Caulobacterales	204458|Caulobacterales	N	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliG	-	-	ko:K02410	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliG_C,FliG_M,FliG_N
DYD3_k127_6539309_9	1382303.JPOM01000001_gene2499	3.197e-18	93.0	COG1317@1|root,COG1317@2|Bacteria,1N39Q@1224|Proteobacteria,2V6G4@28211|Alphaproteobacteria,2KH6V@204458|Caulobacterales	204458|Caulobacterales	N	bacterial-type flagellum organization	-	-	-	ko:K02411	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	-
DYD3_k127_6539309_8	394221.Mmar10_0683	3.071e-42	157.0	COG1886@1|root,COG1886@2|Bacteria,1RGWT@1224|Proteobacteria,2UC6U@28211|Alphaproteobacteria,440RP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliN	GO:0005575,GO:0005623,GO:0005886,GO:0009288,GO:0009425,GO:0016020,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0071944	-	ko:K02417	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FliMN_C
DYD3_k127_6539309_2	450851.PHZ_c0858	7.319e-200	632.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,2KG02@204458|Caulobacterales	204458|Caulobacterales	K	Two component, sigma54 specific, transcriptional regulator, Fis family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_8,Sigma54_activat
DYD3_k127_6539309_0	1161401.ASJA01000003_gene2931	5.257e-300	934.0	COG1298@1|root,COG1298@2|Bacteria,1MUF3@1224|Proteobacteria,2TQUR@28211|Alphaproteobacteria,43WMN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Flagellar biosynthesis protein FlhA	flhA	-	-	ko:K02400	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FHIPEP
DYD3_k127_6539309_6	1161401.ASJA01000003_gene2932	3.132e-54	204.0	COG1419@1|root,COG1419@2|Bacteria,1MUQW@1224|Proteobacteria,2U06N@28211|Alphaproteobacteria,43XG8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	COG1419 Flagellar GTP-binding protein	flhF	-	-	ko:K02404	-	-	-	-	ko00000,ko02035	-	-	-	SRP54
DYD3_k127_6539309_4	1161401.ASJA01000003_gene2933	1.544e-84	287.0	COG0455@1|root,COG0455@2|Bacteria,1R8IW@1224|Proteobacteria,2TWWA@28211|Alphaproteobacteria,43X6H@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Belongs to the ParA family	-	-	-	ko:K04562	-	-	-	-	ko00000,ko02035	-	-	-	AAA_31,CbiA,ParA
DYD3_k127_6539309_5	570952.ATVH01000016_gene2570	4.528e-69	237.0	COG2193@1|root,COG2193@2|Bacteria,1RCW7@1224|Proteobacteria,2U70I@28211|Alphaproteobacteria,2JS83@204441|Rhodospirillales	204441|Rhodospirillales	P	Belongs to the bacterioferritin family	bfr	-	1.16.3.1	ko:K03594	ko00860,map00860	-	R00078	RC02758	ko00000,ko00001,ko01000	-	-	-	Ferritin
DYD3_k127_6539309_7	1280954.HPO_08683	1.428e-46	175.0	arCOG05203@1|root,31A0K@2|Bacteria,1RHZR@1224|Proteobacteria,2U9JR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6539309_3	1123503.KB908063_gene668	4.34e-98	331.0	2CCG4@1|root,2Z873@2|Bacteria,1MVM8@1224|Proteobacteria,2TTSY@28211|Alphaproteobacteria,2KK6A@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6539309_1	1280946.HY29_09650	2.691e-235	749.0	COG1629@1|root,COG4771@2|Bacteria,1MX42@1224|Proteobacteria,2TR9M@28211|Alphaproteobacteria,43WTY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K16087	-	-	-	-	ko00000,ko02000	1.B.14.2	-	-	Plug,TonB_dep_Rec
DYD3_k127_658686_1	314254.OA2633_06124	2.63e-82	280.0	COG1407@1|root,COG1407@2|Bacteria,1RC5G@1224|Proteobacteria,2TU2T@28211|Alphaproteobacteria,43XGF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	ICC-like phosphoesterases	MA20_22045	-	-	ko:K06953	-	-	-	-	ko00000	-	-	-	Metallophos
DYD3_k127_658686_2	67332.FM21_17175	7.413e-63	244.0	COG1680@1|root,COG1680@2|Bacteria,2H2SY@201174|Actinobacteria	201174|Actinobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_658686_4	627192.SLG_09880	5.467e-12	76.0	28MSC@1|root,2ZB0S@2|Bacteria,1NG2A@1224|Proteobacteria,2VG0A@28211|Alphaproteobacteria,2KBBC@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_658686_3	450851.PHZ_c3492	1.291e-42	171.0	COG0697@1|root,COG0697@2|Bacteria,1MZXM@1224|Proteobacteria,2U8WM@28211|Alphaproteobacteria,2KGP5@204458|Caulobacterales	204458|Caulobacterales	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_658686_0	999541.bgla_1g11340	8.026e-136	439.0	COG2141@1|root,COG2141@2|Bacteria,1MVF0@1224|Proteobacteria,2VHXM@28216|Betaproteobacteria,1K0JZ@119060|Burkholderiaceae	28216|Betaproteobacteria	C	PFAM luciferase family protein	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
DYD3_k127_661268_2	1122929.KB908216_gene2184	1.319e-36	143.0	COG0537@1|root,COG0537@2|Bacteria,1MZVD@1224|Proteobacteria,2UC00@28211|Alphaproteobacteria	28211|Alphaproteobacteria	FG	Histidine triad (HIT) protein	MA20_21960	-	-	-	-	-	-	-	-	-	-	-	HIT
DYD3_k127_661268_1	1161401.ASJA01000013_gene704	3.87e-93	319.0	COG1028@1|root,COG1028@2|Bacteria,1MUCH@1224|Proteobacteria,2TQRM@28211|Alphaproteobacteria,43WDR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_02360	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_661268_3	450851.PHZ_c0210	1.252e-34	138.0	COG2009@1|root,COG2009@2|Bacteria,1N02N@1224|Proteobacteria,2UC47@28211|Alphaproteobacteria,2KH2P@204458|Caulobacterales	204458|Caulobacterales	C	Succinate dehydrogenase, cytochrome b556 subunit	-	-	-	ko:K00241	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002	-	-	-	Sdh_cyt
DYD3_k127_661268_4	1280946.HY29_09120	7.587e-31	125.0	COG2142@1|root,COG2142@2|Bacteria,1MZND@1224|Proteobacteria,2UC3G@28211|Alphaproteobacteria,43Y42@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG2142 Succinate dehydrogenase, hydrophobic anchor subunit	sdhD	-	-	ko:K00242	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173	R02164	RC00045	ko00000,ko00001,ko00002	-	-	-	Sdh_cyt
DYD3_k127_661268_0	394221.Mmar10_2846	0.0	1017.0	COG1053@1|root,COG1053@2|Bacteria,1MU5M@1224|Proteobacteria,2TQJA@28211|Alphaproteobacteria,43W58@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily	sdhA	-	1.3.5.1,1.3.5.4	ko:K00239	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_2,Succ_DH_flav_C
DYD3_k127_6615534_1	158500.BV97_01291	3.381e-109	398.0	COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,2UNZR@28211|Alphaproteobacteria,2KECI@204457|Sphingomonadales	204457|Sphingomonadales	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_6615534_2	566466.NOR53_2881	2.746e-66	242.0	COG3712@1|root,COG3712@2|Bacteria,1N28G@1224|Proteobacteria,1RR9M@1236|Gammaproteobacteria,1JAAH@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	PT	Domain of unknown function (DUF4974)	-	-	-	ko:K07165	-	-	-	-	ko00000	-	-	-	DUF4880,DUF4974,FecR
DYD3_k127_6615534_3	566466.NOR53_2662	2.789e-43	165.0	COG1595@1|root,COG1595@2|Bacteria,1RM2Q@1224|Proteobacteria,1S80F@1236|Gammaproteobacteria,1JB0K@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	K	COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	fpvI	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_6615534_0	1134474.O59_002798	2.455e-170	559.0	COG1629@1|root,COG4771@2|Bacteria,1MUC1@1224|Proteobacteria,1RRFS@1236|Gammaproteobacteria,1FI7J@10|Cellvibrio	1236|Gammaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014,ko:K16089	-	-	-	-	ko00000,ko02000	1.B.14,1.B.14.1,1.B.14.10	-	-	Plug,TonB_dep_Rec
DYD3_k127_6624751_0	314254.OA2633_15170	5.143e-107	355.0	COG1702@1|root,COG1702@2|Bacteria,1MWMU@1224|Proteobacteria,2TSYC@28211|Alphaproteobacteria,43W8Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	COG1702 Phosphate starvation-inducible protein PhoH	-	-	-	ko:K06217	-	-	-	-	ko00000	-	-	-	PhoH
DYD3_k127_6624751_1	663610.JQKO01000009_gene402	5.529e-73	250.0	COG0663@1|root,COG0663@2|Bacteria,1RD76@1224|Proteobacteria,2U5GR@28211|Alphaproteobacteria,3NB75@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Bacterial transferase hexapeptide (six repeats)	MA20_32230	-	-	-	-	-	-	-	-	-	-	-	Hexapep
DYD3_k127_6624751_2	1122613.ATUP01000001_gene2398	1.58e-33	138.0	28I3D@1|root,2Z876@2|Bacteria,1P0DR@1224|Proteobacteria,2TTG2@28211|Alphaproteobacteria,43YHW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	PilZ domain	MA20_31715	-	-	-	-	-	-	-	-	-	-	-	PilZ
DYD3_k127_6624751_3	1479238.JQMZ01000001_gene1331	1.907e-21	100.0	COG5388@1|root,COG5388@2|Bacteria,1MXF0@1224|Proteobacteria,2U3WI@28211|Alphaproteobacteria,43Y77@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	PAS domain	MA20_31625	-	-	-	-	-	-	-	-	-	-	-	PAS_5
DYD3_k127_6631866_8	575540.Isop_3177	2.142e-43	163.0	COG2960@1|root,COG2960@2|Bacteria,2IX87@203682|Planctomycetes	203682|Planctomycetes	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_6631866_7	627192.SLG_31390	1.198e-61	235.0	COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,2UA2F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	ankyrin repeat	-	-	-	ko:K15503	-	-	-	-	ko00000,ko01009,ko03400	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5
DYD3_k127_6631866_5	1449350.OCH239_13880	3.572e-78	274.0	COG0341@1|root,COG0341@2|Bacteria,1MU74@1224|Proteobacteria,2TSFW@28211|Alphaproteobacteria,4KN9S@93682|Roseivivax	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secF	-	-	ko:K03074	ko03060,ko03070,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
DYD3_k127_6631866_6	551789.ATVJ01000003_gene374	1.082e-75	267.0	COG0673@1|root,COG0673@2|Bacteria,1MZIG@1224|Proteobacteria,2UB61@28211|Alphaproteobacteria,43YV9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_6631866_9	1161401.ASJA01000005_gene2382	1.79e-05	55.0	COG1629@1|root,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,2TTN6@28211|Alphaproteobacteria,43Z16@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Secretin and TonB N terminus short domain	-	-	-	-	-	-	-	-	-	-	-	-	Plug,STN,TonB_dep_Rec
DYD3_k127_6631866_4	69395.JQLZ01000001_gene2731	5.82e-83	289.0	COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,2TRMS@28211|Alphaproteobacteria,2KG8E@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	ko:K02529	-	-	-	-	ko00000,ko03000	-	-	-	LacI,Peripla_BP_3
DYD3_k127_6631866_3	509190.Cseg_1378	1.578e-99	336.0	COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,2TRMS@28211|Alphaproteobacteria,2KG8E@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	ko:K02529	-	-	-	-	ko00000,ko03000	-	-	-	LacI,Peripla_BP_3
DYD3_k127_6631866_2	1292034.OR37_00002	8.154e-183	597.0	COG2272@1|root,COG2272@2|Bacteria,1MVQZ@1224|Proteobacteria,2TUA9@28211|Alphaproteobacteria,2KHMF@204458|Caulobacterales	204458|Caulobacterales	M	Carboxylesterase family	-	-	-	ko:K03929	-	-	-	-	ko00000,ko01000	-	CE10	-	COesterase
DYD3_k127_6631866_1	1122137.AQXF01000007_gene3610	4.483e-191	637.0	COG4146@1|root,COG4146@2|Bacteria,1MXWV@1224|Proteobacteria,2TUK8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	-	-	-	-	-	-	-	-	-	-	-	-	SSF
DYD3_k127_6631866_0	1088721.NSU_0161	5.214e-247	784.0	COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,2TS28@28211|Alphaproteobacteria,2JZVY@204457|Sphingomonadales	204457|Sphingomonadales	G	Belongs to the glycosyl hydrolase 3 family	-	-	3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	-	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000	-	GH3	-	Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C
DYD3_k127_6633756_26	247633.GP2143_17796	6.238e-40	160.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,1ST6N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6633756_31	247633.GP2143_17796	9.914e-36	153.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,1ST6N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6633756_10	471854.Dfer_1405	7.223e-104	359.0	COG2272@1|root,COG2272@2|Bacteria,4NF5N@976|Bacteroidetes,47MRG@768503|Cytophagia	976|Bacteroidetes	I	Carboxylesterase family	-	-	-	ko:K03929	-	-	-	-	ko00000,ko01000	-	CE10	-	COesterase
DYD3_k127_6633756_32	1207058.L53_06300	2.138e-28	120.0	COG3474@1|root,COG3474@2|Bacteria,1MZGS@1224|Proteobacteria,2UCUT@28211|Alphaproteobacteria,43XXP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG3474 Cytochrome c2	-	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009987,GO:0015979,GO:0016020,GO:0044237,GO:0044464,GO:0071944	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_6633756_0	394221.Mmar10_0267	0.0	1174.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,43WPE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K03296,ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_6633756_14	1122613.ATUP01000001_gene320	1.971e-95	326.0	COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,2U2CU@28211|Alphaproteobacteria,43XM4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	HlyD_D23
DYD3_k127_6633756_28	1161401.ASJA01000008_gene1601	8.402e-39	158.0	2BCV0@1|root,326FP@2|Bacteria,1MYXP@1224|Proteobacteria,2U5PU@28211|Alphaproteobacteria,43YDU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	ko:K20326	ko02024,map02024	-	-	-	ko00000,ko00001	-	-	-	Phenol_MetA_deg
DYD3_k127_6633756_4	450851.PHZ_c1906	3.72e-152	492.0	COG1262@1|root,COG4301@1|root,COG1262@2|Bacteria,COG4301@2|Bacteria,1MUNC@1224|Proteobacteria,2TQXE@28211|Alphaproteobacteria,2KFXT@204458|Caulobacterales	204458|Caulobacterales	S	DinB superfamily	-	-	-	-	-	-	-	-	-	-	-	-	DinB_2,FGE-sulfatase,Methyltransf_33
DYD3_k127_6633756_25	1161401.ASJA01000008_gene1598	4.073e-40	163.0	COG5330@1|root,COG5330@2|Bacteria,1R3VY@1224|Proteobacteria,2TUQ8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_6633756_11	1161401.ASJA01000008_gene1597	2.946e-98	327.0	COG0061@1|root,COG0061@2|Bacteria,1MUBC@1224|Proteobacteria,2TSKN@28211|Alphaproteobacteria,43WGH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP	nadK	-	2.7.1.23	ko:K00858	ko00760,ko01100,map00760,map01100	-	R00104	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	NAD_kinase
DYD3_k127_6633756_29	1123503.KB908058_gene1066	5.269e-37	162.0	COG2198@1|root,COG2198@2|Bacteria,1NENQ@1224|Proteobacteria,2TSW1@28211|Alphaproteobacteria,2KGRV@204458|Caulobacterales	204458|Caulobacterales	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	Hpt
DYD3_k127_6633756_6	1161401.ASJA01000008_gene1594	1.105e-115	385.0	COG5330@1|root,COG5330@2|Bacteria,1MXBZ@1224|Proteobacteria,2TT9C@28211|Alphaproteobacteria,43X6M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	MA20_31465	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_6633756_30	1161401.ASJA01000008_gene1593	1.95e-36	148.0	COG0741@1|root,COG0741@2|Bacteria,1MUMA@1224|Proteobacteria,2TSA5@28211|Alphaproteobacteria,43ZVV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	transglycosylase	-	-	-	-	-	-	-	-	-	-	-	-	SLT
DYD3_k127_6633756_24	1408418.JNJH01000060_gene1179	5.292e-58	215.0	COG0665@1|root,COG0665@2|Bacteria,1N1TN@1224|Proteobacteria,2TR7B@28211|Alphaproteobacteria,2JR5H@204441|Rhodospirillales	204441|Rhodospirillales	E	FAD dependent oxidoreductase	-	-	1.4.3.19	ko:K03153	ko00730,ko01100,map00730,map01100	-	R07463	RC01788	ko00000,ko00001,ko01000	-	-	-	DAO
DYD3_k127_6633756_8	1123503.KB908057_gene2511	3.984e-105	357.0	COG3591@1|root,COG3591@2|Bacteria,1NQI1@1224|Proteobacteria,2U5SD@28211|Alphaproteobacteria,2KIHQ@204458|Caulobacterales	204458|Caulobacterales	E	Belongs to the peptidase S1B family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6633756_17	1333998.M2A_2359	9.902e-87	294.0	COG4783@1|root,COG4783@2|Bacteria,1QUMJ@1224|Proteobacteria,2TXU6@28211|Alphaproteobacteria,4BTGD@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Peptidase family M48	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48
DYD3_k127_6633756_23	314254.OA2633_03986	9.46e-60	216.0	COG4783@1|root,COG4783@2|Bacteria,1QUMJ@1224|Proteobacteria,2TXU6@28211|Alphaproteobacteria,440TN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Peptidase family M48	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48
DYD3_k127_6633756_5	1122613.ATUP01000001_gene335	8.584e-143	477.0	COG2982@1|root,COG2982@2|Bacteria,1NVUY@1224|Proteobacteria,2TRSN@28211|Alphaproteobacteria,43WWJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	protein involved in outer membrane biogenesis	-	-	-	ko:K07289	-	-	-	-	ko00000	-	-	-	AsmA,AsmA_2
DYD3_k127_6633756_21	1161401.ASJA01000008_gene1588	2.292e-64	229.0	COG2859@1|root,COG2859@2|Bacteria,1QU0K@1224|Proteobacteria,2U5D2@28211|Alphaproteobacteria,43ZZM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF541)	-	-	-	ko:K09797	-	-	-	-	ko00000	-	-	-	SIMPL
DYD3_k127_6633756_19	1121949.AQXT01000002_gene843	1.135e-82	295.0	COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TZM5@28211|Alphaproteobacteria,43ZME@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
DYD3_k127_6633756_16	1280952.HJA_00865	5.892e-87	303.0	COG1232@1|root,COG1232@2|Bacteria,1Q8M7@1224|Proteobacteria,2UXPJ@28211|Alphaproteobacteria,43ZKN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Flavin containing amine oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase,NAD_binding_8
DYD3_k127_6633756_33	1218084.BBJK01000110_gene6678	1.066e-26	127.0	COG0824@1|root,COG0824@2|Bacteria,1RCSP@1224|Proteobacteria,2VXA8@28216|Betaproteobacteria,1K7DD@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Thioesterase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT_2
DYD3_k127_6633756_2	1121033.AUCF01000013_gene1547	5.486e-174	557.0	COG0469@1|root,COG0469@2|Bacteria,1MU21@1224|Proteobacteria,2TRFV@28211|Alphaproteobacteria,2JQBA@204441|Rhodospirillales	204441|Rhodospirillales	G	Belongs to the pyruvate kinase family	ttuE	-	2.7.1.40	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	M00001,M00002,M00049,M00050	R00200,R00430,R01138,R01858,R02320	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	PK,PK_C
DYD3_k127_6633756_9	314260.PB2503_05817	2.734e-104	346.0	COG0560@1|root,COG0560@2|Bacteria,1R6HK@1224|Proteobacteria,2TV4J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HAD
DYD3_k127_6633756_34	1197906.CAJQ02000003_gene3219	7.529e-07	52.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria,3JUGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Resolvase	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_6633756_3	1041147.AUFB01000019_gene5509	2.676e-159	512.0	COG0596@1|root,COG0596@2|Bacteria,1MWT6@1224|Proteobacteria,2TSCE@28211|Alphaproteobacteria,4B88J@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_6633756_20	1380390.JIAT01000011_gene2478	1.869e-69	243.0	COG1018@1|root,COG1018@2|Bacteria,2I28S@201174|Actinobacteria,4CPW9@84995|Rubrobacteria	84995|Rubrobacteria	C	Oxidoreductase FAD-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_6,NAD_binding_1
DYD3_k127_6633756_12	1037409.BJ6T_85260	1.318e-96	319.0	COG2041@1|root,COG2041@2|Bacteria,1RADR@1224|Proteobacteria,2U6HX@28211|Alphaproteobacteria,3JYKV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase molybdopterin binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_molyb
DYD3_k127_6633756_22	1040983.AXAE01000014_gene4899	2.623e-60	213.0	COG5207@1|root,COG5207@2|Bacteria,1RHKT@1224|Proteobacteria,2U95J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	PFAM Zn-finger in ubiquitin-hydrolases and other protein	-	-	-	-	-	-	-	-	-	-	-	-	zf-UBP
DYD3_k127_6633756_7	93220.LV28_07855	1.324e-111	372.0	COG0526@1|root,COG0785@1|root,COG0526@2|Bacteria,COG0785@2|Bacteria,1MVV0@1224|Proteobacteria,2VJF0@28216|Betaproteobacteria,1K43E@119060|Burkholderiaceae	28216|Betaproteobacteria	CO	cytochrome c biogenesis protein	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,DsbD,Redoxin
DYD3_k127_6633756_27	1297570.MESS4_790088	7.34e-40	151.0	COG4566@1|root,COG4566@2|Bacteria,1N460@1224|Proteobacteria,2UD2Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_6633756_18	113395.AXAI01000017_gene4716	2.615e-83	281.0	COG4566@1|root,COG4566@2|Bacteria,1R3SP@1224|Proteobacteria,2TQZN@28211|Alphaproteobacteria,3JUPQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_6633756_13	536019.Mesop_4405	1.016e-95	333.0	COG2202@1|root,COG2203@1|root,COG4191@1|root,COG2202@2|Bacteria,COG2203@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria	1224|Proteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	GAF,GAF_2,HATPase_c,HisKA,PAS_3,PAS_9
DYD3_k127_6633756_1	1121127.JAFA01000046_gene6827	5.518e-202	639.0	COG0596@1|root,COG0596@2|Bacteria,1MWVN@1224|Proteobacteria,2VZP3@28216|Betaproteobacteria,1KHJR@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Epoxide hydrolase N terminus	-	-	-	-	-	-	-	-	-	-	-	-	EHN
DYD3_k127_6642754_3	450851.PHZ_c1902	1.225e-100	334.0	COG0491@1|root,COG0491@2|Bacteria,1MUDN@1224|Proteobacteria,2TQJ9@28211|Alphaproteobacteria,2KG0M@204458|Caulobacterales	204458|Caulobacterales	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6642754_0	59538.XP_005961905.1	3.487e-162	520.0	COG0458@1|root,KOG0370@2759|Eukaryota,38CAC@33154|Opisthokonta,3B9FF@33208|Metazoa,3CS9A@33213|Bilateria,4804V@7711|Chordata,490QX@7742|Vertebrata,3J7SX@40674|Mammalia	33208|Metazoa	F	aspartate binding	Cad	-	2.1.3.2,3.5.2.3,6.3.5.5	ko:K11540	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R01397,R01993,R10948,R10949	RC00002,RC00010,RC00043,RC00064,RC00632,RC02750,RC02798,RC02850,RC03314	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	Amidohydro_1,CPSase_L_D2,CPSase_L_D3,CPSase_sm_chain,GATase,MGS,OTCace,OTCace_N
DYD3_k127_6642754_4	1161401.ASJA01000003_gene2853	1.758e-46	173.0	COG1610@1|root,COG1610@2|Bacteria,1RGZS@1224|Proteobacteria,2U7DJ@28211|Alphaproteobacteria,43Y3M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Yqey-like protein	MA20_04985	-	-	ko:K09117	-	-	-	-	ko00000	-	-	-	YqeY
DYD3_k127_6642754_1	983545.Glaag_2965	4.59e-151	489.0	COG4257@1|root,COG4257@2|Bacteria,1QR8W@1224|Proteobacteria,1RQM4@1236|Gammaproteobacteria,468S4@72275|Alteromonadaceae	1236|Gammaproteobacteria	V	Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid	vgb	-	-	ko:K18235	-	-	-	-	ko00000,ko01000,ko01504	-	-	-	SGL
DYD3_k127_6642754_2	1169161.KB897714_gene6406	1.373e-103	368.0	COG1835@1|root,COG1835@2|Bacteria,2GKI5@201174|Actinobacteria	201174|Actinobacteria	I	Acyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3,Glyco_hydro_16
DYD3_k127_6642754_5	1223543.GP2_016_00710	5.58e-23	111.0	COG3544@1|root,COG3544@2|Bacteria,2IKUE@201174|Actinobacteria,4GE1Z@85026|Gordoniaceae	201174|Actinobacteria	S	Domain of unknown function (DUF4142)	-	-	-	-	-	-	-	-	-	-	-	-	DUF305
DYD3_k127_6651930_0	627192.SLG_12260	1.201e-153	497.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1,1.17.2.2	ko:K17760,ko:K21676	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_6651930_7	627192.SLG_36720	6.384e-18	98.0	COG4319@1|root,COG4319@2|Bacteria,1QUR3@1224|Proteobacteria,2TW48@28211|Alphaproteobacteria,2K85Y@204457|Sphingomonadales	204457|Sphingomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_6651930_5	1340493.JNIF01000003_gene3442	1.369e-40	162.0	COG3386@1|root,COG3386@2|Bacteria	2|Bacteria	G	gluconolactonase activity	-	-	-	-	-	-	-	-	-	-	-	-	He_PIG,NHL,SGL
DYD3_k127_6651930_6	1340493.JNIF01000003_gene3442	1.075e-35	152.0	COG3386@1|root,COG3386@2|Bacteria	2|Bacteria	G	gluconolactonase activity	-	-	-	-	-	-	-	-	-	-	-	-	He_PIG,NHL,SGL
DYD3_k127_6651930_1	69395.JQLZ01000001_gene2982	1.052e-130	443.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2TR47@28211|Alphaproteobacteria,2KF07@204458|Caulobacterales	204458|Caulobacterales	G	Glucose / Sorbosone dehydrogenase	-	-	-	ko:K21430	-	-	-	-	ko00000,ko01000	-	-	-	GSDH
DYD3_k127_6654608_5	450851.PHZ_c1172	3.7e-10	73.0	COG0810@1|root,COG0810@2|Bacteria,1RI3K@1224|Proteobacteria,2USTZ@28211|Alphaproteobacteria,2KIVZ@204458|Caulobacterales	204458|Caulobacterales	M	Gram-negative bacterial TonB protein C-terminal	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_6654608_3	1122613.ATUP01000001_gene1965	8.324e-68	241.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,43WDG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_6654608_1	228405.HNE_0322	1.766e-142	466.0	COG0007@1|root,COG1648@1|root,COG0007@2|Bacteria,COG1648@2|Bacteria,1MUI0@1224|Proteobacteria,2TRJC@28211|Alphaproteobacteria,43X97@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme	cysG	-	1.3.1.76,2.1.1.107,4.99.1.4	ko:K02302,ko:K02303	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02864,R03194,R03947	RC00003,RC00871,RC01012,RC01034	ko00000,ko00001,ko00002,ko01000	-	-	-	CysG_dimeriser,NAD_binding_7,Sirohm_synth_M,TP_methylase
DYD3_k127_6654608_4	1280952.HJA_06717	2.799e-27	119.0	2EG12@1|root,339T3@2|Bacteria,1NGID@1224|Proteobacteria,2UK0A@28211|Alphaproteobacteria,43YP6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2849)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2849
DYD3_k127_6654608_2	1121949.AQXT01000002_gene248	5.748e-85	293.0	COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,2TUGP@28211|Alphaproteobacteria,43W8G@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	MA20_05155	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
DYD3_k127_6654608_0	402881.Plav_0889	2.303e-259	821.0	COG0155@1|root,COG0155@2|Bacteria,1MVVB@1224|Proteobacteria,2TRCR@28211|Alphaproteobacteria,1JNM8@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Nitrite and sulphite reductase 4Fe-4S domain	cysI	-	1.8.1.2	ko:K00381	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R00858	RC00065	ko00000,ko00001,ko00002,ko01000	-	-	-	NIR_SIR,NIR_SIR_ferr
DYD3_k127_6654608_6	1120792.JAFV01000001_gene3177	0.0005772	49.0	COG3749@1|root,COG3749@2|Bacteria,1RJR9@1224|Proteobacteria,2UA02@28211|Alphaproteobacteria,371E4@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF934)	-	-	-	-	-	-	-	-	-	-	-	-	DUF934
DYD3_k127_6661005_10	228405.HNE_2348	2.085e-06	57.0	COG5487@1|root,COG5487@2|Bacteria,1NGAH@1224|Proteobacteria,2VBTT@28211|Alphaproteobacteria,43YXG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	UPF0391 membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1328
DYD3_k127_6661005_0	1161401.ASJA01000008_gene1623	8.926e-107	370.0	COG2982@1|root,COG2982@2|Bacteria,1MUAN@1224|Proteobacteria,2U26R@28211|Alphaproteobacteria,43WIC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	AsmA family	-	-	-	ko:K07290	-	-	-	-	ko00000	9.B.121	-	-	AsmA,AsmA_2
DYD3_k127_6661005_7	394221.Mmar10_2261	8.425e-44	165.0	COG5319@1|root,COG5319@2|Bacteria,1MZN2@1224|Proteobacteria,2UBTA@28211|Alphaproteobacteria,43YBU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	MA20_39715	-	-	-	-	-	-	-	-	-	-	-	DUF1178
DYD3_k127_6661005_1	1161401.ASJA01000004_gene2242	9.33e-98	332.0	COG0388@1|root,COG0388@2|Bacteria,1MUUB@1224|Proteobacteria,2TRGZ@28211|Alphaproteobacteria,43W4N@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	amidohydrolase	MA20_39720	-	3.5.1.77	ko:K01459,ko:K11206	-	-	-	-	ko00000,ko01000	-	-	-	CN_hydrolase
DYD3_k127_6661005_8	551789.ATVJ01000001_gene1778	2.605e-24	119.0	COG0695@1|root,COG0695@2|Bacteria,1N72P@1224|Proteobacteria,2UFM1@28211|Alphaproteobacteria,43YDQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	grxC	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0033218,GO:0042277,GO:0043167,GO:0043168,GO:0043295,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0055114,GO:0072341,GO:1900750,GO:1901681	-	ko:K03676	-	-	-	-	ko00000,ko03110	-	-	-	Glutaredoxin
DYD3_k127_6661005_4	1479238.JQMZ01000001_gene1278	2.895e-69	244.0	COG1040@1|root,COG1040@2|Bacteria,1RHAV@1224|Proteobacteria,2TV7G@28211|Alphaproteobacteria,43XP4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Phosphoribosyl transferase domain	comF	-	-	-	-	-	-	-	-	-	-	-	Pribosyltran
DYD3_k127_6661005_12	1161401.ASJA01000004_gene2245	3.463e-05	54.0	COG0500@1|root,COG2226@2|Bacteria,1PA5F@1224|Proteobacteria,2TRFS@28211|Alphaproteobacteria,43XFB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	COG0500 SAM-dependent methyltransferases	bioC	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_6661005_3	1292034.OR37_03006	1.121e-79	276.0	COG0500@1|root,COG0500@2|Bacteria,1QUNM@1224|Proteobacteria,2TW20@28211|Alphaproteobacteria,2KF32@204458|Caulobacterales	204458|Caulobacterales	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_6661005_11	347834.RHE_CH00202	5.534e-06	57.0	COG3847@1|root,COG3847@2|Bacteria,1NGVU@1224|Proteobacteria,2UJE8@28211|Alphaproteobacteria,4BGUV@82115|Rhizobiaceae	28211|Alphaproteobacteria	U	Flp pilus assembly protein, pilin Flp	pilA	-	-	ko:K02651	ko04112,map04112	-	-	-	ko00000,ko00001,ko02035,ko02044	-	-	-	Flp_Fap
DYD3_k127_6661005_6	394221.Mmar10_2266	4.522e-59	208.0	COG0494@1|root,COG0494@2|Bacteria,1RCZM@1224|Proteobacteria,2U7A4@28211|Alphaproteobacteria,43Y4V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	mutT	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	Acetyltransf_3,NUDIX,NUDIX_4
DYD3_k127_6661005_2	1161401.ASJA01000004_gene2248	5.373e-80	273.0	COG0760@1|root,COG0760@2|Bacteria,1MZDK@1224|Proteobacteria,2TVQD@28211|Alphaproteobacteria,43XE3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Peptidylprolyl isomerase	prsA	-	5.2.1.8	ko:K01802,ko:K03769	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase,Rotamase_2,Rotamase_3
DYD3_k127_6673934_3	1280941.HY2_14155	8.471e-43	162.0	COG5489@1|root,COG5489@2|Bacteria,1RDVU@1224|Proteobacteria,2U98G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
DYD3_k127_6673934_6	1123366.TH3_19312	1.282e-14	81.0	COG3311@1|root,COG3311@2|Bacteria	2|Bacteria	K	DNA excision	-	-	-	-	-	-	-	-	-	-	-	-	HTH_17
DYD3_k127_6673934_7	94624.Bpet2188	1.225e-13	79.0	2BYDP@1|root,2Z7UG@2|Bacteria,1P8PK@1224|Proteobacteria,2VM2Q@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Protein of unknown function (DUF2840)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2840
DYD3_k127_6673934_4	314260.PB2503_03632	8.501e-40	160.0	COG4959@1|root,COG4959@2|Bacteria,1MV1E@1224|Proteobacteria,2UA6F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	OU	Type IV secretory pathway, protease	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S26
DYD3_k127_6673934_1	1038860.AXAP01000062_gene2427	1.756e-162	533.0	COG3843@1|root,COG3843@2|Bacteria,1MU0S@1224|Proteobacteria,2TSP8@28211|Alphaproteobacteria,3JSRJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Protein of unknown function (DUF3363)	traI	-	-	-	-	-	-	-	-	-	-	-	DUF3363
DYD3_k127_6673934_2	450851.PHZ_c3263	6.371e-117	395.0	COG2272@1|root,COG2272@2|Bacteria,1MVQZ@1224|Proteobacteria,2TUA9@28211|Alphaproteobacteria,2KHMF@204458|Caulobacterales	204458|Caulobacterales	M	Carboxylesterase family	-	-	-	ko:K03929	-	-	-	-	ko00000,ko01000	-	CE10	-	COesterase
DYD3_k127_6673934_0	1150469.RSPPHO_01976	1.239e-278	871.0	COG3505@1|root,COG3505@2|Bacteria,1MV1G@1224|Proteobacteria,2TR6N@28211|Alphaproteobacteria,2JQ6D@204441|Rhodospirillales	204441|Rhodospirillales	U	COG3505 Type IV secretory pathway, VirD4 components	-	-	-	ko:K03205	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	T4SS-DNA_transf
DYD3_k127_6673934_5	1280953.HOC_02686	1.52e-24	106.0	COG4962@1|root,COG4962@2|Bacteria,1QTTS@1224|Proteobacteria	1224|Proteobacteria	U	PFAM CopG domain protein DNA-binding domain protein	-	-	-	-	-	-	-	-	-	-	-	-	RHH_1
DYD3_k127_6674745_0	402881.Plav_0355	0.0	1151.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,1JQMX@119043|Rhodobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	cusA	-	-	ko:K07787	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4	-	-	ACR_tran
DYD3_k127_6674745_3	402881.Plav_0354	2.068e-138	458.0	COG0845@1|root,COG0845@2|Bacteria,1MVAS@1224|Proteobacteria,2TTGG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	cusB	-	-	ko:K07798	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4,8.A.1	-	-	CusF_Ec,HlyD_D23,HlyD_D4
DYD3_k127_6674745_14	1280941.HY2_12290	7.189e-08	63.0	COG3182@1|root,COG3182@2|Bacteria,1R59B@1224|Proteobacteria,2U5IQ@28211|Alphaproteobacteria,440YK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
DYD3_k127_6674745_8	1247963.JPHU01000004_gene524	4.732e-42	159.0	COG3182@1|root,COG3182@2|Bacteria,1R59B@1224|Proteobacteria,2UQ32@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	conserved secreted or membrane protein precursor	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
DYD3_k127_6674745_11	450851.PHZ_c1474	3.633e-24	110.0	COG3678@1|root,COG3678@2|Bacteria,1N273@1224|Proteobacteria,2UCY6@28211|Alphaproteobacteria,2KJYP@204458|Caulobacterales	204458|Caulobacterales	NPTU	Heavy-metal resistance	-	-	-	-	-	-	-	-	-	-	-	-	Metal_resist
DYD3_k127_6674745_9	509190.Cseg_2521	2.867e-39	157.0	COG1595@1|root,COG1595@2|Bacteria,1N413@1224|Proteobacteria,2U89X@28211|Alphaproteobacteria,2KGWJ@204458|Caulobacterales	204458|Caulobacterales	K	TIGRFAM RNA polymerase sigma factor, sigma-70 family	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_6674745_16	1217720.ALOX01000027_gene3635	2.364e-06	55.0	COG2372@1|root,COG2372@2|Bacteria,1PF47@1224|Proteobacteria,2UMP0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	CopC domain	-	-	-	ko:K07156	-	-	-	-	ko00000,ko02000	9.B.62.2	-	-	CopC
DYD3_k127_6674745_17	1040987.AZUY01000025_gene5526	5.885e-06	57.0	COG1276@1|root,COG2372@1|root,COG1276@2|Bacteria,COG2372@2|Bacteria,1MXGC@1224|Proteobacteria,2TVGX@28211|Alphaproteobacteria,43JA9@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Copper resistance protein D	ycnJ	-	-	ko:K07245,ko:K14166	-	-	-	-	ko00000,ko02000	9.B.62.1	-	-	CopC,CopD
DYD3_k127_6674745_1	1161401.ASJA01000013_gene771	1.254e-243	768.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TQXH@28211|Alphaproteobacteria,43ZDT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	Multicopper oxidase	copA	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
DYD3_k127_6674745_7	1280948.HY36_05990	1.08e-78	276.0	COG3667@1|root,COG3667@2|Bacteria,1MXW6@1224|Proteobacteria,2U363@28211|Alphaproteobacteria,43XI8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	protein involved in copper resistance	copB	-	-	ko:K07233	-	-	-	-	ko00000	-	-	-	CopB
DYD3_k127_6674745_10	519989.ECTPHS_09198	5.617e-36	150.0	COG3019@1|root,COG3019@2|Bacteria,1MZ9V@1224|Proteobacteria,1S9CQ@1236|Gammaproteobacteria,1WZ4Y@135613|Chromatiales	135613|Chromatiales	S	Protein of unknown function, DUF	-	-	-	-	-	-	-	-	-	-	-	-	DUF411
DYD3_k127_6674745_12	1267005.KB911255_gene2548	1.382e-22	100.0	COG1937@1|root,COG1937@2|Bacteria,1N9P2@1224|Proteobacteria,2UF3F@28211|Alphaproteobacteria,3N793@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	MA20_24475	-	-	ko:K21600	-	-	-	-	ko00000,ko03000	-	-	-	Trns_repr_metal
DYD3_k127_6674745_5	1161401.ASJA01000015_gene995	1.172e-98	327.0	COG2003@1|root,COG2003@2|Bacteria,1MXZ5@1224|Proteobacteria,2TQXM@28211|Alphaproteobacteria,43X14@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the UPF0758 family	radC	-	-	ko:K03630	-	-	-	-	ko00000	-	-	-	RadC
DYD3_k127_6674745_4	394221.Mmar10_1044	2.031e-119	391.0	COG0024@1|root,COG0024@2|Bacteria,1MU99@1224|Proteobacteria,2TQTH@28211|Alphaproteobacteria,43WNA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Methionine aminopeptidase	map	-	3.4.11.18	ko:K01265	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M24
DYD3_k127_6674745_6	1280950.HJO_15958	1.272e-83	286.0	COG1058@1|root,COG1058@2|Bacteria,1MVG6@1224|Proteobacteria,2TU5C@28211|Alphaproteobacteria,43WEB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA	cinA1	-	-	-	-	-	-	-	-	-	-	-	MoCF_biosynth
DYD3_k127_6674745_2	582402.Hbal_0949	1.132e-195	632.0	COG2304@1|root,COG2304@2|Bacteria,1MUTS@1224|Proteobacteria,2TSQU@28211|Alphaproteobacteria,43X5H@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	von Willebrand factor, type A	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	DUF3520,VWA,vWF_A
DYD3_k127_6680660_2	1123503.KB908056_gene1416	1.381e-117	405.0	COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2U0VY@28211|Alphaproteobacteria,2KG9Y@204458|Caulobacterales	204458|Caulobacterales	O	Subtilase family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S8
DYD3_k127_6680660_3	394221.Mmar10_1272	6.477e-68	235.0	COG0251@1|root,COG0251@2|Bacteria,1RHMZ@1224|Proteobacteria,2U9H4@28211|Alphaproteobacteria,43XNV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	endoribonuclease	-	-	-	-	-	-	-	-	-	-	-	-	YjgF_endoribonc
DYD3_k127_6680660_1	394221.Mmar10_1294	5.18e-154	496.0	COG3146@1|root,COG3146@2|Bacteria,1MU35@1224|Proteobacteria,2TS5I@28211|Alphaproteobacteria,43W5K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	MA20_36195	-	-	ko:K09919	-	-	-	-	ko00000	-	-	-	FemAB_like
DYD3_k127_6680660_4	1333998.M2A_2723	1.851e-66	234.0	COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2TU60@28211|Alphaproteobacteria,4BR27@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Glutamine amidotransferase class-I	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
DYD3_k127_6680660_6	1479238.JQMZ01000001_gene1585	3.305e-46	180.0	COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,2U956@28211|Alphaproteobacteria,43XX3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	FG	COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	hit	-	-	ko:K02503	-	-	-	-	ko00000,ko04147	-	-	-	HIT
DYD3_k127_6680660_7	290315.Clim_2247	7.27e-36	149.0	COG0500@1|root,COG2226@2|Bacteria	2|Bacteria	Q	methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_13,Methyltransf_14,Methyltransf_23,Methyltransf_25
DYD3_k127_6680660_0	1267005.KB911256_gene2018	0.0	1126.0	COG0542@1|root,COG0542@2|Bacteria,1MV8B@1224|Proteobacteria,2TQUZ@28211|Alphaproteobacteria,3N627@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	O	Belongs to the ClpA ClpB family	clpA	GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564	-	ko:K03694	-	-	-	-	ko00000,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD3_k127_6680660_5	1161401.ASJA01000001_gene537	3.007e-46	169.0	COG2127@1|root,COG2127@2|Bacteria,1MZU8@1224|Proteobacteria,2U982@28211|Alphaproteobacteria,43XVS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation	clpS	-	-	ko:K06891	-	-	-	-	ko00000	-	-	-	ClpS
DYD3_k127_6694125_1	1123229.AUBC01000033_gene3585	2.316e-110	372.0	COG3263@1|root,COG3263@2|Bacteria,1MVKV@1224|Proteobacteria,2TSZJ@28211|Alphaproteobacteria,3JR2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transporter associated domain	cvrA	-	-	ko:K11105	-	-	-	-	ko00000,ko02000	2.A.36.6	-	-	CorC_HlyC,Na_H_Exchanger
DYD3_k127_6694125_0	1122613.ATUP01000001_gene1949	9.031e-155	503.0	COG0624@1|root,COG0624@2|Bacteria,1MW6G@1224|Proteobacteria,2TT0J@28211|Alphaproteobacteria,43W7B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	dapE	-	3.5.1.18	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R02734	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_6694125_8	1161401.ASJA01000006_gene1877	3.72e-19	101.0	2ADP9@1|root,313E8@2|Bacteria,1PS9C@1224|Proteobacteria,2V4GC@28211|Alphaproteobacteria,43YWK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6694125_3	1211115.ALIQ01000018_gene2164	1.109e-93	323.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2TR47@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	glucose sorbosone	yliI	GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016901,GO:0019842,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046872,GO:0048037,GO:0048038,GO:0055114,GO:0070968,GO:0097159,GO:1901363	1.1.5.2	ko:K00117,ko:K21430	ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130	-	R06620	RC00066	ko00000,ko00001,ko01000	-	-	-	GSDH
DYD3_k127_6694125_2	1333998.M2A_1808	5.826e-106	355.0	COG1322@1|root,COG1322@2|Bacteria,1MWHV@1224|Proteobacteria,2TTX6@28211|Alphaproteobacteria,4BQ1C@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	RmuC family	rmuC	-	-	ko:K09760	-	-	-	-	ko00000	-	-	-	RmuC
DYD3_k127_6694125_7	1282360.ABAC460_22810	1.393e-24	110.0	COG2261@1|root,COG2261@2|Bacteria,1N72Y@1224|Proteobacteria,2UFM5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PFAM Transglycosylase-associated protein	MA20_19350	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
DYD3_k127_6694125_6	1122137.AQXF01000003_gene2445	7.4e-26	117.0	COG2771@1|root,COG2771@2|Bacteria,1N6UR@1224|Proteobacteria,2U10Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Autoind_bind,GerE
DYD3_k127_6694125_5	1161401.ASJA01000014_gene1044	5.153e-35	140.0	COG1629@1|root,COG4771@2|Bacteria,1R0WC@1224|Proteobacteria,2U1A6@28211|Alphaproteobacteria,43WF4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl_3,Plug,TonB_dep_Rec
DYD3_k127_6700449_1	1411123.JQNH01000001_gene342	3.507e-60	218.0	COG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,2TTP3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Ribosomal protein L11 methyltransferase	prmA	-	-	ko:K02687	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PrmA
DYD3_k127_6700449_3	251221.35212644	2.6e-06	52.0	COG3668@1|root,COG3668@2|Bacteria	2|Bacteria	D	Plasmid stabilization system	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_6700449_0	1479238.JQMZ01000001_gene2492	0.0	1109.0	COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,2TS2B@28211|Alphaproteobacteria,43W5A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA helicase	uvrD	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
DYD3_k127_6700449_2	4787.PITG_01873T0	5.811e-09	67.0	COG4642@1|root,COG5253@1|root,KOG0229@2759|Eukaryota,KOG0231@2759|Eukaryota,3QFTN@4776|Peronosporales	4776|Peronosporales	T	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.	-	-	-	-	-	-	-	-	-	-	-	-	MORN
DYD3_k127_6700943_1	582402.Hbal_2379	7.3e-91	304.0	COG0302@1|root,COG0302@2|Bacteria,1MY3N@1224|Proteobacteria,2TSZI@28211|Alphaproteobacteria,43W63@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	GTP cyclohydrolase	folE	-	3.5.4.16	ko:K01495	ko00790,ko01100,map00790,map01100	M00126,M00841,M00842,M00843	R00428,R04639,R05046,R05048	RC00263,RC00294,RC00323,RC00945,RC01188	ko00000,ko00001,ko00002,ko01000	-	-	-	GTP_cyclohydroI
DYD3_k127_6700943_0	394221.Mmar10_2398	2.509e-161	522.0	COG0215@1|root,COG0215@2|Bacteria,1MV8H@1224|Proteobacteria,2TQQ1@28211|Alphaproteobacteria,43WG1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	cysS	-	6.1.1.16	ko:K01883	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_2,tRNA-synt_1e
DYD3_k127_6705469_8	1161401.ASJA01000018_gene1236	3.196e-32	129.0	COG0628@1|root,COG0628@2|Bacteria,1MXXU@1224|Proteobacteria,2TVPN@28211|Alphaproteobacteria,43WS1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	AI-2E family transporter	-	-	-	-	-	-	-	-	-	-	-	-	AI-2E_transport
DYD3_k127_6705469_11	1161401.ASJA01000008_gene1611	2.357e-05	51.0	COG4575@1|root,COG4575@2|Bacteria,1NGZU@1224|Proteobacteria,2V708@28211|Alphaproteobacteria,43YSH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF883)	-	-	-	-	-	-	-	-	-	-	-	-	DUF883
DYD3_k127_6705469_2	1449351.RISW2_11995	2.369e-156	503.0	COG0019@1|root,COG0019@2|Bacteria,1MUA6@1224|Proteobacteria,2TQPB@28211|Alphaproteobacteria,4KKZV@93682|Roseivivax	28211|Alphaproteobacteria	E	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine	lysA	GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.1.1.20	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R00451	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Orn_Arg_deC_N,Orn_DAP_Arg_deC
DYD3_k127_6705469_1	1479238.JQMZ01000001_gene151	2.942e-176	566.0	COG0165@1|root,COG0165@2|Bacteria,1MUTU@1224|Proteobacteria,2TR4H@28211|Alphaproteobacteria,43W4D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	argininosuccinate lyase	argH	GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.3.2.1	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	M00029,M00844,M00845	R01086	RC00445,RC00447	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ASL_C2,Lyase_1
DYD3_k127_6705469_6	1479238.JQMZ01000001_gene150	6.704e-44	175.0	COG0526@1|root,COG0526@2|Bacteria,1MZ5J@1224|Proteobacteria,2TR0C@28211|Alphaproteobacteria,43Y5N@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CO	Thiol disulfide interchange protein	tlpA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_6705469_5	1397528.Q671_08470	1.616e-53	196.0	COG3128@1|root,COG3128@2|Bacteria,1MUI7@1224|Proteobacteria,1RQ0M@1236|Gammaproteobacteria,1XKW7@135619|Oceanospirillales	135619|Oceanospirillales	S	PKHD-type hydroxylase	-	-	-	ko:K07336	-	-	-	-	ko00000,ko01000	-	-	-	2OG-FeII_Oxy_3
DYD3_k127_6705469_10	1530186.JQEY01000001_gene917	2.7e-16	89.0	COG1555@1|root,COG1555@2|Bacteria,1RFDG@1224|Proteobacteria,2UEJG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	photosystem II stabilization	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6705469_0	1161401.ASJA01000008_gene1718	5.649e-206	672.0	COG0492@1|root,COG0664@1|root,COG0492@2|Bacteria,COG0664@2|Bacteria,1MVX2@1224|Proteobacteria,2TQN3@28211|Alphaproteobacteria,43Z8W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	OT	Cyclic nucleotide-monophosphate binding domain	MA20_21135	-	1.8.1.9	ko:K00384	ko00450,map00450	-	R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_3,cNMP_binding
DYD3_k127_6705469_4	1054213.HMPREF9946_05107	6.345e-71	251.0	COG0671@1|root,COG0671@2|Bacteria,1RDK3@1224|Proteobacteria,2U7BJ@28211|Alphaproteobacteria,2JSGN@204441|Rhodospirillales	204441|Rhodospirillales	I	Acid phosphatase homologues	-	-	3.6.1.27	ko:K19302	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	PAP2
DYD3_k127_6705469_7	402881.Plav_0787	5.654e-39	155.0	COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,2TR01@28211|Alphaproteobacteria,1JNK4@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	DnaJ C terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	DnaJ,DnaJ_C
DYD3_k127_6705469_3	450851.PHZ_c2738	1.917e-85	288.0	COG0259@1|root,COG0259@2|Bacteria,1NZUU@1224|Proteobacteria,2TT1U@28211|Alphaproteobacteria,2KFPI@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP)	pdxH	-	1.4.3.5	ko:K00275	ko00750,ko01100,ko01120,map00750,map01100,map01120	M00124	R00277,R00278,R01710,R01711	RC00048,RC00116	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_phzG_C,Putative_PNPOx
DYD3_k127_6706989_29	671143.DAMO_0613	7.367e-40	154.0	COG0535@1|root,COG0535@2|Bacteria,2NRPX@2323|unclassified Bacteria	2|Bacteria	S	Radical SAM superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Fer4_12,Fer4_14,Radical_SAM,SPASM
DYD3_k127_6706989_21	1136417.AZWE01000006_gene4252	5.791e-64	236.0	COG4188@1|root,COG4188@2|Bacteria,2GJVV@201174|Actinobacteria,4D95E@85008|Micromonosporales	201174|Actinobacteria	S	dienelactone hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	PAF-AH_p_II
DYD3_k127_6706989_4	1161401.ASJA01000010_gene1462	1.31e-257	799.0	COG0055@1|root,COG0055@2|Bacteria,1MUFU@1224|Proteobacteria,2TRGP@28211|Alphaproteobacteria,43WIX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits	atpD	-	3.6.3.14	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_N
DYD3_k127_6706989_17	366602.Caul_5063	1.785e-86	299.0	COG5285@1|root,COG5285@2|Bacteria,1N0PE@1224|Proteobacteria,2UDQG@28211|Alphaproteobacteria,2KHB6@204458|Caulobacterales	204458|Caulobacterales	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_6706989_5	394221.Mmar10_1020	2.647e-215	679.0	COG0380@1|root,COG0380@2|Bacteria,1MUIY@1224|Proteobacteria,2TQMP@28211|Alphaproteobacteria,43X9B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	COG0380 Trehalose-6-phosphate synthase	otsA	-	2.4.1.15,2.4.1.347	ko:K00697	ko00500,ko01100,map00500,map01100	-	R02737	RC00005,RC00049,RC02748	ko00000,ko00001,ko01000,ko01003	-	GT20	-	Glyco_transf_20
DYD3_k127_6706989_20	394221.Mmar10_1019	1.001e-68	241.0	COG1877@1|root,COG1877@2|Bacteria,1RGY2@1224|Proteobacteria,2U9NF@28211|Alphaproteobacteria,43XN9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Removes the phosphate from trehalose 6-phosphate to produce free trehalose	otsB	-	3.1.3.12	ko:K01087	ko00500,ko01100,map00500,map01100	-	R02778	RC00017	ko00000,ko00001,ko01000	-	-	-	Trehalose_PPase
DYD3_k127_6706989_2	394221.Mmar10_1018	7.988e-281	885.0	COG3387@1|root,COG3387@2|Bacteria,1MV08@1224|Proteobacteria,2TRMQ@28211|Alphaproteobacteria,43WFF@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	COG3387 Glucoamylase and related glycosyl hydrolases	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_15
DYD3_k127_6706989_22	228405.HNE_2676	1.525e-62	225.0	COG3271@1|root,COG3271@2|Bacteria	2|Bacteria	-	-	-	-	-	ko:K12541	ko02010,map02010	M00330	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	3.A.1.109.3,3.A.1.109.4	-	-	Peptidase_C39,Peptidase_C70
DYD3_k127_6706989_24	675635.Psed_0259	2.712e-56	210.0	COG2813@1|root,COG2813@2|Bacteria,2I4JN@201174|Actinobacteria,4EE6D@85010|Pseudonocardiales	201174|Actinobacteria	J	O-methyltransferase	-	-	2.1.1.304	ko:K21460	-	-	-	-	ko00000,ko01000	-	-	-	Dimerisation2,Methyltransf_2
DYD3_k127_6706989_19	1121033.AUCF01000009_gene1089	4.352e-71	263.0	COG0642@1|root,COG5002@1|root,COG0642@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2TZDS@28211|Alphaproteobacteria,2JZ03@204441|Rhodospirillales	204441|Rhodospirillales	T	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA,Hpt,PAS_3,PAS_4,PAS_9,Response_reg
DYD3_k127_6706989_36	215803.DB30_7974	1.302e-08	66.0	COG0666@1|root,COG0666@2|Bacteria,1N0BQ@1224|Proteobacteria,42VU1@68525|delta/epsilon subdivisions,2WSF4@28221|Deltaproteobacteria,2YXAN@29|Myxococcales	28221|Deltaproteobacteria	S	Ankyrin repeats (many copies)	-	-	-	ko:K06867	-	-	-	-	ko00000	-	-	-	Ank_2,Ank_4
DYD3_k127_6706989_26	1144319.PMI16_04630	4.626e-53	190.0	COG0454@1|root,COG0456@2|Bacteria,1NHGD@1224|Proteobacteria	1224|Proteobacteria	K	-acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_9
DYD3_k127_6706989_10	314254.OA2633_09019	2.146e-111	366.0	COG0224@1|root,COG0224@2|Bacteria,1MU28@1224|Proteobacteria,2TR11@28211|Alphaproteobacteria,43WDN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex	atpG	-	-	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt
DYD3_k127_6706989_3	394221.Mmar10_2804	5.118e-277	857.0	COG0056@1|root,COG0056@2|Bacteria,1MUG7@1224|Proteobacteria,2TQYK@28211|Alphaproteobacteria,43X0V@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit	atpA	-	3.6.3.14	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
DYD3_k127_6706989_28	509190.Cseg_0234	2.359e-43	168.0	COG0712@1|root,COG0712@2|Bacteria,1MVRH@1224|Proteobacteria,2U5IC@28211|Alphaproteobacteria,2KGEU@204458|Caulobacterales	204458|Caulobacterales	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpH	-	-	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	OSCP
DYD3_k127_6706989_30	1300345.LF41_2649	3.907e-39	166.0	COG0457@1|root,COG5616@1|root,COG0457@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,1S1MS@1236|Gammaproteobacteria,1X9I0@135614|Xanthomonadales	135614|Xanthomonadales	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6706989_14	1161401.ASJA01000010_gene1467	3.514e-99	330.0	COG0861@1|root,COG0861@2|Bacteria,1MWC9@1224|Proteobacteria,2U6N7@28211|Alphaproteobacteria,43WY1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Integral membrane protein TerC family	-	-	-	-	-	-	-	-	-	-	-	-	TerC
DYD3_k127_6706989_23	450851.PHZ_c2719	3.859e-61	237.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2V5S6@28211|Alphaproteobacteria,2KHZ3@204458|Caulobacterales	204458|Caulobacterales	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,Response_reg
DYD3_k127_6706989_1	1479238.JQMZ01000001_gene298	2.608e-288	905.0	COG1198@1|root,COG1198@2|Bacteria,1MUUZ@1224|Proteobacteria,2TQTQ@28211|Alphaproteobacteria,43WQR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA	priA	-	-	ko:K04066	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C
DYD3_k127_6706989_32	1121949.AQXT01000002_gene743	5.966e-32	132.0	COG4067@1|root,COG4067@2|Bacteria,1N7Y2@1224|Proteobacteria,2VG0M@28211|Alphaproteobacteria,44058@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Putative ATP-dependant zinc protease	-	-	-	-	-	-	-	-	-	-	-	-	Zn_protease
DYD3_k127_6706989_11	394221.Mmar10_2809	9.528e-103	355.0	COG4974@1|root,COG4974@2|Bacteria,1QU6A@1224|Proteobacteria,2TS7W@28211|Alphaproteobacteria,43WP7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family. XerC subfamily	xerC	-	-	ko:K03733	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD3_k127_6706989_33	314254.OA2633_09059	4.788e-21	100.0	COG1670@1|root,COG1670@2|Bacteria,1NG0Z@1224|Proteobacteria,2UT9P@28211|Alphaproteobacteria,44008@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
DYD3_k127_6706989_12	1161401.ASJA01000014_gene1020	1.175e-102	354.0	COG3898@1|root,COG3898@2|Bacteria,1P5RR@1224|Proteobacteria,2TT5Q@28211|Alphaproteobacteria,43WUD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	HemY protein N-terminus	lapB	-	-	ko:K02498	-	-	-	-	ko00000	-	-	-	HemY_N,TPR_19
DYD3_k127_6706989_35	394221.Mmar10_0042	5.271e-12	78.0	COG4223@1|root,COG4223@2|Bacteria	2|Bacteria	DZ	transferase activity, transferring acyl groups other than amino-acyl groups	-	-	4.2.1.75	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03165	RC01861	ko00000,ko00001,ko00002,ko01000	-	-	-	FlxA,Mitofilin
DYD3_k127_6706989_31	1207063.P24_06831	1.376e-38	153.0	COG1587@1|root,COG4223@1|root,COG1587@2|Bacteria,COG4223@2|Bacteria,1NMTP@1224|Proteobacteria,2U1Y2@28211|Alphaproteobacteria,2JS8C@204441|Rhodospirillales	204441|Rhodospirillales	H	COG1587 Uroporphyrinogen-III synthase	hemD	-	4.2.1.75	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03165	RC01861	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4,Mitofilin
DYD3_k127_6706989_15	1161401.ASJA01000014_gene1023	2.007e-94	321.0	COG0181@1|root,COG0181@2|Bacteria,1MU56@1224|Proteobacteria,2TS3D@28211|Alphaproteobacteria,43XIE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps	hemC	-	2.5.1.61	ko:K01749	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00084	RC02317	ko00000,ko00001,ko00002,ko01000	-	-	-	Porphobil_deam,Porphobil_deamC
DYD3_k127_6706989_8	394221.Mmar10_0039	2.522e-135	451.0	COG0533@1|root,COG0533@2|Bacteria,1MU6S@1224|Proteobacteria,2TSF7@28211|Alphaproteobacteria,43W7K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction	tsaD	GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360,GO:1901564	2.3.1.234	ko:K01409	-	-	R10648	RC00070,RC00416	ko00000,ko01000,ko03016	-	-	-	Peptidase_M22
DYD3_k127_6706989_9	1123503.KB908057_gene2322	6.137e-124	407.0	COG0240@1|root,COG0240@2|Bacteria,1MUU3@1224|Proteobacteria,2TT75@28211|Alphaproteobacteria,2KFVM@204458|Caulobacterales	204458|Caulobacterales	I	Glycerol-3-phosphate dehydrogenase	gpsA	-	1.1.1.94	ko:K00057	ko00564,ko01110,map00564,map01110	-	R00842,R00844	RC00029	ko00000,ko00001,ko01000	-	-	-	NAD_Gly3P_dh_C,NAD_Gly3P_dh_N
DYD3_k127_6706989_18	335659.S23_63550	8.931e-85	285.0	28N0F@1|root,2ZB6V@2|Bacteria,1R4J3@1224|Proteobacteria,2TYJU@28211|Alphaproteobacteria,3JTQM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	MA20_06690	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_6706989_16	1304872.JAGC01000009_gene16	4.336e-93	311.0	COG0745@1|root,COG0745@2|Bacteria,1MY2Z@1224|Proteobacteria,42MP1@68525|delta/epsilon subdivisions,2WJPD@28221|Deltaproteobacteria,2M7S0@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	PFAM response regulator receiver	-	-	-	ko:K07663,ko:K07664,ko:K11329	ko02020,map02020	M00449,M00450,M00467,M00645,M00646,M00648	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_6706989_6	1040986.ATYO01000032_gene37	3.566e-152	510.0	COG0642@1|root,COG2205@2|Bacteria,1NFY3@1224|Proteobacteria,2TSQR@28211|Alphaproteobacteria,43MKT@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	T	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	MA20_06300	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
DYD3_k127_6706989_7	314254.OA2633_09749	1.042e-145	490.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,43Z1Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	Cache domain	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal,PilZ,dCache_1
DYD3_k127_6706989_27	551275.KB899549_gene800	2.29e-46	186.0	298RU@1|root,319DZ@2|Bacteria,1RM4R@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6706989_34	194867.ALBQ01000059_gene3309	9.176e-19	91.0	2EJQK@1|root,33DFE@2|Bacteria,1NJMW@1224|Proteobacteria,2V0ZT@28211|Alphaproteobacteria,2KAYZ@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6706989_0	438753.AZC_0301	1e-323	1002.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRKS@28211|Alphaproteobacteria,3EYAB@335928|Xanthobacteraceae	28211|Alphaproteobacteria	F	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	acsA	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
DYD3_k127_6706989_13	1123054.KB907703_gene1342	6.619e-100	363.0	COG3174@1|root,COG3174@2|Bacteria,1NDBI@1224|Proteobacteria,1RRGY@1236|Gammaproteobacteria,1WVVW@135613|Chromatiales	135613|Chromatiales	S	Domain of unknown function (DUF4010)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4010,MgtC
DYD3_k127_6707458_2	7668.SPU_011748-tr	5.408e-36	154.0	COG0666@1|root,COG2940@1|root,KOG1082@2759|Eukaryota,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta	33154|Opisthokonta	M	protein localization to T-tubule	-	-	-	ko:K10380,ko:K15502	ko04624,ko05205,map04624,map05205	-	-	-	ko00000,ko00001,ko01009,ko03400,ko04812	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5,ZU5
DYD3_k127_6707458_1	234267.Acid_2032	8.239e-115	384.0	COG2960@1|root,COG2960@2|Bacteria	2|Bacteria	M	long-chain fatty acid transporting porin activity	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_6707458_3	1382359.JIAL01000001_gene108	6.851e-34	143.0	COG0491@1|root,COG0491@2|Bacteria,3Y48F@57723|Acidobacteria,2JIRT@204432|Acidobacteriia	204432|Acidobacteriia	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6707458_0	331869.BAL199_02819	4.848e-239	747.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TSG6@28211|Alphaproteobacteria,4BPHN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	FAD linked oxidases, C-terminal domain	glcD	-	1.1.3.15	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_6721010_7	1123503.KB908063_gene641	2.087e-50	198.0	COG0840@1|root,COG4192@1|root,COG0840@2|Bacteria,COG4192@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,2KIFU@204458|Caulobacterales	204458|Caulobacterales	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	-	-	-	-	-	-	-	-	-	-	-	-	MCPsignal
DYD3_k127_6721010_8	394221.Mmar10_0713	1.06e-45	169.0	COG0840@1|root,COG4192@1|root,COG0840@2|Bacteria,COG4192@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,43XBM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	4HB_MCP_1,HAMP,MCPsignal
DYD3_k127_6721010_3	1211115.ALIQ01000072_gene3845	1.254e-120	400.0	COG2265@1|root,COG2265@2|Bacteria,1MV3A@1224|Proteobacteria,2TR40@28211|Alphaproteobacteria,3N9V0@45404|Beijerinckiaceae	28211|Alphaproteobacteria	J	tRNA (Uracil-5-)-methyltransferase	rumA	-	2.1.1.190,2.1.1.35	ko:K00557,ko:K03215	-	-	-	-	ko00000,ko01000,ko03009,ko03016	-	-	-	tRNA_U5-meth_tr
DYD3_k127_6721010_1	1161401.ASJA01000021_gene631	1.972e-186	604.0	COG1629@1|root,COG1629@2|Bacteria,1QUVF@1224|Proteobacteria,2TYQ1@28211|Alphaproteobacteria,440VC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_6721010_5	627192.SLG_31380	6.235e-71	250.0	COG4886@1|root,COG4886@2|Bacteria,1N4KB@1224|Proteobacteria	1224|Proteobacteria	S	Planctomycete cytochrome C	-	-	-	-	-	-	-	-	-	-	-	-	PSCyt1
DYD3_k127_6721010_10	1298865.H978DRAFT_0854	1.226e-26	115.0	COG3909@1|root,COG3909@2|Bacteria,1N1E5@1224|Proteobacteria,1S4BY@1236|Gammaproteobacteria,467E6@72275|Alteromonadaceae	1236|Gammaproteobacteria	C	Cytochrome C'	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C_2
DYD3_k127_6721010_11	1298865.H978DRAFT_0854	8.472e-24	108.0	COG3909@1|root,COG3909@2|Bacteria,1N1E5@1224|Proteobacteria,1S4BY@1236|Gammaproteobacteria,467E6@72275|Alteromonadaceae	1236|Gammaproteobacteria	C	Cytochrome C'	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C_2
DYD3_k127_6721010_9	1336235.JAEG01000020_gene3476	1.934e-39	159.0	COG0491@1|root,COG0491@2|Bacteria,1PKW8@1224|Proteobacteria,2TUW8@28211|Alphaproteobacteria,4B70X@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6721010_0	886293.Sinac_1153	6.063e-205	674.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	CBM60,PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5,zf-C4_Topoisom
DYD3_k127_6721010_4	627192.SLG_31400	4.863e-97	339.0	COG2960@1|root,COG2960@2|Bacteria,1RGT9@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_6721010_6	886293.Sinac_1155	8.516e-51	199.0	COG0666@1|root,COG0666@2|Bacteria,2J1F8@203682|Planctomycetes	203682|Planctomycetes	S	Ankyrin repeat	-	-	-	-	-	-	-	-	-	-	-	-	Ank_2,Ank_4
DYD3_k127_6721010_2	450851.PHZ_c1075	1.343e-155	499.0	COG2813@1|root,COG2813@2|Bacteria,1QWWU@1224|Proteobacteria,2TX6V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	O-methyltransferase	crtF	-	2.1.1.210	ko:K09846	ko00906,ko01100,map00906,map01100	-	R07521,R07524,R07527,R07529,R07533,R07535	RC00003,RC02082	ko00000,ko00001,ko01000	-	-	-	Dimerisation2,Methyltransf_2
DYD3_k127_6721010_12	1121861.KB899914_gene2059	3.558e-15	78.0	COG2813@1|root,COG2813@2|Bacteria,1QWWU@1224|Proteobacteria,2TX6V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	O-methyltransferase	crtF	-	2.1.1.210	ko:K09846	ko00906,ko01100,map00906,map01100	-	R07521,R07524,R07527,R07529,R07533,R07535	RC00003,RC02082	ko00000,ko00001,ko01000	-	-	-	Dimerisation2,Methyltransf_2
DYD3_k127_6737456_3	1430440.MGMSRv2_1187	7.338e-89	316.0	COG2274@1|root,COG2274@2|Bacteria,1R2T0@1224|Proteobacteria,2USBQ@28211|Alphaproteobacteria,2JPQF@204441|Rhodospirillales	204441|Rhodospirillales	V	COG2274 ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	-	-	-	ko:K12541	ko02010,map02010	M00330	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	3.A.1.109.3,3.A.1.109.4	-	-	ABC_membrane,ABC_tran
DYD3_k127_6737456_0	156889.Mmc1_0731	2.271e-127	434.0	COG2274@1|root,COG2274@2|Bacteria,1R2T0@1224|Proteobacteria,2USBQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	COG2274 ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	-	-	-	ko:K06147,ko:K06148,ko:K12541	ko02010,map02010	M00330	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	3.A.1,3.A.1.106,3.A.1.109,3.A.1.109.3,3.A.1.109.4,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_6737456_10	1278309.KB907100_gene1769	1.858e-67	249.0	COG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,1RNK4@1236|Gammaproteobacteria,1XIG4@135619|Oceanospirillales	135619|Oceanospirillales	M	secretion protein	-	-	-	ko:K11003	ko03070,ko05133,map03070,map05133	M00325,M00575	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	8.A.1.3.1,8.A.1.3.2	-	-	Biotin_lipoyl_2,HlyD_3
DYD3_k127_6737456_11	1123072.AUDH01000023_gene754	2.731e-60	231.0	COG1061@1|root,COG1061@2|Bacteria,1MV9F@1224|Proteobacteria,2TUXC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Type III restriction enzyme res subunit	-	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,ResIII,UPF0547
DYD3_k127_6737456_7	1297865.APJD01000015_gene3469	7.117e-80	272.0	COG3571@1|root,COG3571@2|Bacteria,1RD20@1224|Proteobacteria,2U1XJ@28211|Alphaproteobacteria,3JSHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	hydrolase of the alpha beta-hydrolase fold	-	-	-	ko:K07020	-	-	-	-	ko00000	-	-	-	Abhydrolase_6,DLH,Thioesterase
DYD3_k127_6737456_14	1123261.AXDW01000011_gene504	0.0005505	50.0	COG2885@1|root,COG2885@2|Bacteria,1N6EM@1224|Proteobacteria,1RMJ7@1236|Gammaproteobacteria,1X9HN@135614|Xanthomonadales	135614|Xanthomonadales	M	Outer membrane protein beta-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA
DYD3_k127_6737456_13	1144305.PMI02_01738	2.316e-07	60.0	2DNBN@1|root,32WN2@2|Bacteria,1N5BF@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF3313)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3313
DYD3_k127_6737456_9	555793.WSK_3352	2.246e-70	272.0	COG0577@1|root,COG0577@2|Bacteria,1NREW@1224|Proteobacteria,2U1KH@28211|Alphaproteobacteria,2K128@204457|Sphingomonadales	204457|Sphingomonadales	V	MacB-like periplasmic core domain	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_6737456_8	555793.WSK_3352	1.254e-70	271.0	COG0577@1|root,COG0577@2|Bacteria,1NREW@1224|Proteobacteria,2U1KH@28211|Alphaproteobacteria,2K128@204457|Sphingomonadales	204457|Sphingomonadales	V	MacB-like periplasmic core domain	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_6737456_1	1449076.JOOE01000001_gene2748	9.263e-111	388.0	COG0577@1|root,COG0577@2|Bacteria,1NREW@1224|Proteobacteria,2U1KH@28211|Alphaproteobacteria,2K128@204457|Sphingomonadales	204457|Sphingomonadales	V	MacB-like periplasmic core domain	-	-	-	-	-	-	-	-	-	-	-	-	FtsX,MacB_PCD
DYD3_k127_6737456_6	555793.WSK_3352	3.542e-83	311.0	COG0577@1|root,COG0577@2|Bacteria,1NREW@1224|Proteobacteria,2U1KH@28211|Alphaproteobacteria,2K128@204457|Sphingomonadales	204457|Sphingomonadales	V	MacB-like periplasmic core domain	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_6737456_4	264731.PRU_1979	3.366e-88	300.0	COG1136@1|root,COG1136@2|Bacteria,4NFDW@976|Bacteroidetes,2FMDA@200643|Bacteroidia	976|Bacteroidetes	V	bacteriocin export ABC transporter, lactococcin 972 group	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_6737456_2	1122137.AQXF01000007_gene3497	2.413e-95	331.0	COG0845@1|root,COG0845@2|Bacteria,1NGI2@1224|Proteobacteria,2U1S9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K02005	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3
DYD3_k127_6737456_12	1163409.UUA_17230	9.488e-32	128.0	COG1725@1|root,COG1725@2|Bacteria,1MZG9@1224|Proteobacteria,1S993@1236|Gammaproteobacteria,1X6MY@135614|Xanthomonadales	135614|Xanthomonadales	K	GntR family transcriptional regulator	-	-	-	ko:K07979	-	-	-	-	ko00000,ko03000	-	-	-	GntR
DYD3_k127_6737456_5	1187851.A33M_3015	1.269e-86	295.0	COG2378@1|root,COG2378@2|Bacteria,1MX81@1224|Proteobacteria,2TTSJ@28211|Alphaproteobacteria,3FDU9@34008|Rhodovulum	28211|Alphaproteobacteria	K	WYL domain	-	-	-	-	-	-	-	-	-	-	-	-	WYL
DYD3_k127_6739834_4	1161401.ASJA01000032_gene3033	2.929e-130	426.0	COG1533@1|root,COG1533@2|Bacteria,1MW0H@1224|Proteobacteria,2TQQB@28211|Alphaproteobacteria,43X4P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Radical SAM	MA20_42330	-	-	-	-	-	-	-	-	-	-	-	Radical_SAM
DYD3_k127_6739834_12	69395.JQLZ01000002_gene1376	5.197e-50	182.0	2DMP1@1|root,32SS8@2|Bacteria,1N0XZ@1224|Proteobacteria,2UBZ9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the UPF0311 family	-	-	-	-	-	-	-	-	-	-	-	-	DUF3237
DYD3_k127_6739834_14	1123503.KB908057_gene2356	9.932e-47	180.0	COG4798@1|root,COG4798@2|Bacteria,1RHGZ@1224|Proteobacteria,2U69N@28211|Alphaproteobacteria,2KGA5@204458|Caulobacterales	204458|Caulobacterales	S	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6739834_10	1123072.AUDH01000002_gene2405	1.603e-52	200.0	COG1573@1|root,COG1573@2|Bacteria,1MWX1@1224|Proteobacteria,2TT4Q@28211|Alphaproteobacteria,2JRPG@204441|Rhodospirillales	204441|Rhodospirillales	L	Uracil-DNA glycosylase	-	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_6739834_1	551275.KB899548_gene234	1.174e-254	796.0	COG0644@1|root,COG2440@1|root,COG0644@2|Bacteria,COG2440@2|Bacteria,1MVU6@1224|Proteobacteria,2TS0R@28211|Alphaproteobacteria,43X9R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Electron transfer flavoprotein-ubiquinone oxidoreductase	etf	-	1.5.5.1	ko:K00311	-	-	-	-	ko00000,ko01000	-	-	-	ETF_QO,FAD_binding_2,NAD_binding_8
DYD3_k127_6739834_5	1161401.ASJA01000020_gene608	3.113e-121	415.0	COG0457@1|root,COG0457@2|Bacteria,1MYB8@1224|Proteobacteria,2TQV5@28211|Alphaproteobacteria,43X3J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	MA20_42300	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_19,TPR_2,TPR_6,TPR_7,TPR_8
DYD3_k127_6739834_11	1479238.JQMZ01000001_gene1430	8.944e-51	194.0	COG1947@1|root,COG1947@2|Bacteria,1MVU3@1224|Proteobacteria,2TUFV@28211|Alphaproteobacteria,43XK3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol	ispE	GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515	2.7.1.148	ko:K00919	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05634	RC00002,RC01439	ko00000,ko00001,ko00002,ko01000	-	-	-	GHMP_kinases_C,GHMP_kinases_N
DYD3_k127_6739834_16	1280954.HPO_00705	1.936e-38	157.0	COG0472@1|root,COG0472@2|Bacteria,1MWYW@1224|Proteobacteria,2TTW6@28211|Alphaproteobacteria,43Y5E@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	glycosyl transferase family	mraY2	-	2.7.8.33,2.7.8.35	ko:K02851,ko:K13007	-	-	R08856	RC00002	ko00000,ko01000,ko01003,ko01005	-	-	-	Glycos_transf_4
DYD3_k127_6739834_15	1121946.AUAX01000001_gene2398	7.763e-39	166.0	COG2273@1|root,COG2273@2|Bacteria,2IDV0@201174|Actinobacteria,4DGY8@85008|Micromonosporales	201174|Actinobacteria	G	Glycosyl hydrolases family 16	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_16
DYD3_k127_6739834_17	748280.NH8B_2260	1.917e-27	119.0	COG3467@1|root,COG3467@2|Bacteria,1RAZD@1224|Proteobacteria,2VRB2@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Pfam:Pyridox_oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Putative_PNPOx
DYD3_k127_6739834_6	1123503.KB908058_gene764	2.323e-113	375.0	COG0142@1|root,COG0142@2|Bacteria,1MUK6@1224|Proteobacteria,2TSDZ@28211|Alphaproteobacteria,2KFM3@204458|Caulobacterales	204458|Caulobacterales	H	Belongs to the FPP GGPP synthase family	-	-	2.5.1.90	ko:K02523	ko00900,ko01110,map00900,map01110	-	R09248	RC00279	ko00000,ko00001,ko01000,ko01006	-	-	-	polyprenyl_synt
DYD3_k127_6739834_18	1089552.KI911559_gene1270	1.136e-18	88.0	2E3KZ@1|root,32YJ8@2|Bacteria,1N7A7@1224|Proteobacteria,2UFMR@28211|Alphaproteobacteria,2JTZQ@204441|Rhodospirillales	204441|Rhodospirillales	S	Putative prokaryotic signal transducing protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2007
DYD3_k127_6739834_13	1161401.ASJA01000020_gene612	5.856e-50	190.0	COG4123@1|root,COG4123@2|Bacteria,1MXEQ@1224|Proteobacteria,2TUBR@28211|Alphaproteobacteria,43XSY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Methyltransferase small domain	yfiC	-	2.1.1.223	ko:K15460	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	MTS
DYD3_k127_6739834_8	1161401.ASJA01000004_gene2206	1.11e-80	277.0	COG0616@1|root,COG0616@2|Bacteria,1MUXE@1224|Proteobacteria,2TQZP@28211|Alphaproteobacteria,43ZPU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	OU	Peptidase family S49	sohB	-	-	ko:K04773,ko:K04774	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_S49
DYD3_k127_6739834_0	991905.SL003B_3434	0.0	1202.0	COG0004@1|root,COG5001@1|root,COG0004@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Diguanylate cyclase	-	-	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	Ammonium_transp,EAL,GGDEF,PAS_9
DYD3_k127_6739834_9	1449049.JONW01000003_gene2035	6.76e-58	205.0	COG1522@1|root,COG1522@2|Bacteria,1MX7R@1224|Proteobacteria,2VG6I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	-	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24
DYD3_k127_6739834_2	1381123.AYOD01000013_gene2205	8.214e-238	747.0	COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,2TSPJ@28211|Alphaproteobacteria,43IE9@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Histidine ammonia-lyase	-	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009698,GO:0009699,GO:0009987,GO:0016043,GO:0016054,GO:0016829,GO:0016840,GO:0016841,GO:0019438,GO:0019439,GO:0019748,GO:0019752,GO:0022607,GO:0042802,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044550,GO:0046395,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0052883,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606	4.3.1.23,4.3.1.3	ko:K01745,ko:K10774	ko00340,ko00350,ko01100,map00340,map00350,map01100	M00045	R00737,R01168	RC00361	ko00000,ko00001,ko00002,ko01000	-	-	-	Lyase_aromatic
DYD3_k127_6739834_3	394221.Mmar10_0124	7.554e-135	443.0	COG0477@1|root,COG2814@2|Bacteria,1QTX0@1224|Proteobacteria,2TUM5@28211|Alphaproteobacteria,43W54@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EGP	COG0477 Permeases of the major facilitator superfamily	-	-	-	ko:K08225	-	-	-	-	ko00000,ko02000	2.A.1.38	-	-	MFS_1,MFS_3
DYD3_k127_6747160_6	1122218.KB893663_gene1697	5.76e-51	188.0	COG0806@1|root,COG0806@2|Bacteria,1MWQR@1224|Proteobacteria,2U9UT@28211|Alphaproteobacteria,1JQZT@119045|Methylobacteriaceae	28211|Alphaproteobacteria	J	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes	rimM	-	-	ko:K02860	-	-	-	-	ko00000,ko03009	-	-	-	PRC,RimM
DYD3_k127_6747160_3	189753.AXAS01000010_gene7222	2.319e-118	386.0	COG0500@1|root,COG2226@2|Bacteria,1RB1Z@1224|Proteobacteria,2U64Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	ubiE/COQ5 methyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Ubie_methyltran
DYD3_k127_6747160_2	1123503.KB908057_gene2632	1.725e-119	397.0	COG2355@1|root,COG2355@2|Bacteria,1MWEW@1224|Proteobacteria,2TR5C@28211|Alphaproteobacteria,2KIF5@204458|Caulobacterales	204458|Caulobacterales	E	Membrane dipeptidase (Peptidase family M19)	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M19
DYD3_k127_6747160_4	314254.OA2633_09414	1.441e-108	356.0	COG0336@1|root,COG0336@2|Bacteria,1MUN1@1224|Proteobacteria,2TSIZ@28211|Alphaproteobacteria,43WA0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Belongs to the RNA methyltransferase TrmD family	trmD	GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.228	ko:K00554	-	-	R00597	RC00003,RC00334	ko00000,ko01000,ko03016	-	-	-	tRNA_m1G_MT
DYD3_k127_6747160_5	394221.Mmar10_2899	2.9e-52	192.0	COG0335@1|root,COG0335@2|Bacteria,1RH3A@1224|Proteobacteria,2U9DF@28211|Alphaproteobacteria,43XR3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	rplS	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02884	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L19
DYD3_k127_6747160_9	582402.Hbal_0427	1.919e-15	88.0	COG0457@1|root,COG0457@2|Bacteria,1RFRI@1224|Proteobacteria,2UK5F@28211|Alphaproteobacteria,43Y88@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6747160_7	443218.AS9A_2450	1.66e-44	166.0	COG2764@1|root,COG2764@2|Bacteria,2IFK2@201174|Actinobacteria,238JY@1762|Mycobacteriaceae	201174|Actinobacteria	S	Glyoxalase bleomycin resistance protein dioxygenase	-	-	-	ko:K04750	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_6747160_1	631454.N177_2166	8.265e-154	492.0	COG0136@1|root,COG0136@2|Bacteria,1MUHG@1224|Proteobacteria,2TSRD@28211|Alphaproteobacteria,1JN9Q@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	asd	-	1.2.1.11	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R02291	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh,Semialdhyde_dhC
DYD3_k127_6747160_13	1379270.AUXF01000002_gene1619	5.68e-05	55.0	COG0793@1|root,COG0793@2|Bacteria,1ZUAN@142182|Gemmatimonadetes	142182|Gemmatimonadetes	M	tail specific protease	-	-	-	-	-	-	-	-	-	-	-	-	PDZ_2,Peptidase_S41
DYD3_k127_6747160_12	396588.Tgr7_2570	3.302e-06	53.0	COG1765@1|root,COG1765@2|Bacteria,1MWPR@1224|Proteobacteria,1S7W4@1236|Gammaproteobacteria,1WZVN@135613|Chromatiales	135613|Chromatiales	O	OsmC-like protein	-	-	-	-	-	-	-	-	-	-	-	-	OsmC
DYD3_k127_6747160_11	566466.NOR53_420	3.705e-09	65.0	2EM9G@1|root,33EYK@2|Bacteria,1P8EM@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6747160_8	1449049.JONW01000001_gene3327	8.057e-24	103.0	COG3655@1|root,COG3655@2|Bacteria,1N6VH@1224|Proteobacteria,2UFAM@28211|Alphaproteobacteria,2KH7C@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	ko:K07727	-	-	-	-	ko00000,ko03000	-	-	-	HTH_26
DYD3_k127_6747160_10	595536.ADVE02000001_gene2841	1.473e-09	67.0	2ECD8@1|root,336BG@2|Bacteria,1NEC1@1224|Proteobacteria,2UJ4M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2975)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2975
DYD3_k127_6747160_0	438753.AZC_1575	4.395e-162	518.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TTGJ@28211|Alphaproteobacteria,3EYGP@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	MA20_26420	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
DYD3_k127_6756674_6	1336243.JAEA01000007_gene790	5.718e-53	192.0	COG4731@1|root,COG4731@2|Bacteria,1RHT2@1224|Proteobacteria,2TZZZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6756674_7	1206732.BAGD01000106_gene4698	4.971e-44	165.0	2E1PV@1|root,32X09@2|Bacteria,2H615@201174|Actinobacteria,4G2U9@85025|Nocardiaceae	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6756674_3	1408224.SAMCCGM7_c2270	4.348e-92	309.0	COG3865@1|root,COG3865@2|Bacteria,1N7IY@1224|Proteobacteria,2U993@28211|Alphaproteobacteria,4B973@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	2.1.1.222,2.1.1.64	ko:K00568	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04988,R05614,R08769,R08781	RC00003,RC00392,RC01895	ko00000,ko00001,ko00002,ko01000	-	-	-	3-dmu-9_3-mt
DYD3_k127_6756674_5	536019.Mesop_3334	4.222e-66	228.0	COG0346@1|root,COG0346@2|Bacteria,1RD0N@1224|Proteobacteria,2U7D1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_6756674_8	1530186.JQEY01000001_gene697	1.864e-05	51.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Resolvase	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_6756674_4	1280952.HJA_00045	9.004e-67	252.0	COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,43XNB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2,TPR_16,TPR_8,Trans_reg_C
DYD3_k127_6756674_2	402881.Plav_1883	4.63e-173	565.0	COG4772@1|root,COG4772@2|Bacteria,1MUIH@1224|Proteobacteria	1224|Proteobacteria	P	Receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_6756674_1	1248760.ANFZ01000002_gene2973	2.456e-223	713.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_6756674_0	1297863.APJF01000010_gene3097	3.286e-240	758.0	COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,1MVWY@1224|Proteobacteria,2TRSZ@28211|Alphaproteobacteria,3JR3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA ligase	ligD	-	6.5.1.1	ko:K01971	ko03450,map03450	-	R00381	RC00005	ko00000,ko00001,ko01000,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,LigD_N
DYD3_k127_6757561_22	323098.Nwi_1894	1.482e-26	117.0	COG2242@1|root,COG2242@2|Bacteria,1QVKC@1224|Proteobacteria,2TWH7@28211|Alphaproteobacteria,3JSSP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Vibrio cholerae RfbT protein	MA20_43520	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
DYD3_k127_6757561_3	627192.SLG_38050	2.883e-143	490.0	COG1629@1|root,COG4771@2|Bacteria,1NU2Y@1224|Proteobacteria,2UPZC@28211|Alphaproteobacteria,2K91N@204457|Sphingomonadales	204457|Sphingomonadales	P	Protein involved in receptor activity and transport	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_6757561_19	1280944.HY17_16590	5.661e-41	168.0	COG3712@1|root,COG3712@2|Bacteria,1MZCK@1224|Proteobacteria,2UD4P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	PT	Sigma factor regulatory protein FecR PupR family	-	-	-	ko:K07165	-	-	-	-	ko00000	-	-	-	DUF4880,DUF4974,FecR
DYD3_k127_6757561_20	1280952.HJA_13590	1.783e-33	141.0	COG1595@1|root,COG1595@2|Bacteria,1NB9U@1224|Proteobacteria,2UGTI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_6757561_21	631454.N177_3279	3.256e-29	126.0	COG1309@1|root,COG1309@2|Bacteria,1QE3S@1224|Proteobacteria,2U3XG@28211|Alphaproteobacteria,1JP91@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6757561_15	376733.IT41_09505	7.539e-53	204.0	COG0345@1|root,COG0345@2|Bacteria,1R5J1@1224|Proteobacteria,2TTY7@28211|Alphaproteobacteria,2PV5T@265|Paracoccus	28211|Alphaproteobacteria	E	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	proC	-	1.5.1.2	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	M00015	R01248,R01251,R03291,R03293	RC00054,RC00083	ko00000,ko00001,ko00002,ko01000	-	-	-	F420_oxidored,P5CR_dimer
DYD3_k127_6757561_16	394221.Mmar10_0763	5.605e-51	186.0	COG5465@1|root,COG5465@2|Bacteria,1REC1@1224|Proteobacteria,2U7UP@28211|Alphaproteobacteria,43XXA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Putative bacterial sensory transduction regulator	MA20_05485	-	-	-	-	-	-	-	-	-	-	-	YbjN
DYD3_k127_6757561_11	1333998.M2A_0325	5.252e-74	251.0	COG1592@1|root,COG1592@2|Bacteria,1R9WG@1224|Proteobacteria,2U5EA@28211|Alphaproteobacteria,4BRY6@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Rubrerythrin	-	-	-	-	-	-	-	-	-	-	-	-	Rubrerythrin
DYD3_k127_6757561_1	402881.Plav_3639	1.178e-174	558.0	COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2U059@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Cysteine-rich domain	-	-	1.1.5.3	ko:K00113	ko00564,ko01110,map00564,map01110	-	R00848	RC00029	ko00000,ko00001,ko01000	-	-	-	CCG
DYD3_k127_6757561_13	1220535.IMCC14465_07900	4.371e-72	248.0	COG0247@1|root,COG0247@2|Bacteria,1RF02@1224|Proteobacteria,2U69V@28211|Alphaproteobacteria,4BRYX@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Protein of unknown function (DUF3501)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3501
DYD3_k127_6757561_18	397945.Aave_2058	2.971e-43	175.0	28MSC@1|root,2ZB0S@2|Bacteria,1NG2A@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6757561_27	555793.WSK_4046	1.848e-16	93.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria,2KBI7@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6757561_25	991905.SL003B_1197	1.005e-19	93.0	COG2960@1|root,COG2960@2|Bacteria,1N725@1224|Proteobacteria,2UFEP@28211|Alphaproteobacteria,4BSU8@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Membrane fusogenic activity	MA20_05375	-	-	ko:K09806	-	-	-	-	ko00000	-	-	-	BMFP
DYD3_k127_6757561_8	450851.PHZ_c2858	1.855e-88	302.0	COG0682@1|root,COG0682@2|Bacteria,1MVE3@1224|Proteobacteria,2TTNS@28211|Alphaproteobacteria,2KFY6@204458|Caulobacterales	204458|Caulobacterales	M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	lgt	-	-	ko:K13292	-	-	-	-	ko00000,ko01000	-	-	-	LGT
DYD3_k127_6757561_4	1161401.ASJA01000006_gene1931	4.364e-129	422.0	COG1565@1|root,COG1565@2|Bacteria,1N3CJ@1224|Proteobacteria,2TRHW@28211|Alphaproteobacteria,43WZ8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Putative S-adenosyl-L-methionine-dependent methyltransferase	MA20_05390	-	2.1.1.79	ko:K00574,ko:K18164	ko04714,map04714	-	-	-	ko00000,ko00001,ko01000,ko03029	-	-	-	Methyltransf_28
DYD3_k127_6757561_28	388739.RSK20926_21749	9.534e-15	83.0	COG3474@1|root,COG3474@2|Bacteria,1QWSY@1224|Proteobacteria,2U23C@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Cytochrome P460	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_P460
DYD3_k127_6757561_26	1198114.AciX9_3013	6.254e-19	94.0	2ANK7@1|root,31DJB@2|Bacteria,3Y7J7@57723|Acidobacteria,2JMT1@204432|Acidobacteriia	204432|Acidobacteriia	S	Cytochrome P460	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_P460
DYD3_k127_6757561_9	1160718.SU9_02217	2.037e-82	286.0	COG4977@1|root,COG4977@2|Bacteria,2GM0M@201174|Actinobacteria	201174|Actinobacteria	K	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
DYD3_k127_6757561_12	1122929.KB908217_gene123	5.406e-74	273.0	COG1496@1|root,COG1496@2|Bacteria,1MW2H@1224|Proteobacteria,2TTXU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the multicopper oxidase YfiH RL5 family	yfiH	-	-	ko:K05810	-	-	-	-	ko00000,ko01000	-	-	-	Cu-oxidase_4
DYD3_k127_6757561_2	314254.OA2633_13400	1.628e-152	487.0	COG0462@1|root,COG0462@2|Bacteria,1MW21@1224|Proteobacteria,2TR4Y@28211|Alphaproteobacteria,43X4T@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)	prs	-	2.7.6.1	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	M00005	R01049	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Pribosyl_synth,Pribosyltran,Pribosyltran_N
DYD3_k127_6757561_17	1415166.NONO_c37910	4.236e-45	172.0	2APNY@1|root,31ESI@2|Bacteria,2I2YR@201174|Actinobacteria	201174|Actinobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6757561_14	1123503.KB908058_gene836	1.823e-70	245.0	COG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,2U5P0@28211|Alphaproteobacteria,2KGBD@204458|Caulobacterales	204458|Caulobacterales	J	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	ctc	-	-	ko:K02897	ko03010,map03010	M00178	-	-	ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L25p,Ribosomal_TL5_C
DYD3_k127_6757561_10	450851.PHZ_c2864	3.965e-78	266.0	COG0193@1|root,COG0193@2|Bacteria,1MX1P@1224|Proteobacteria,2TT6Q@28211|Alphaproteobacteria,2KFUJ@204458|Caulobacterales	204458|Caulobacterales	J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis	pth	-	3.1.1.29	ko:K01056	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	Pept_tRNA_hydro
DYD3_k127_6757561_23	1096546.WYO_0796	2.24e-25	111.0	COG5573@1|root,COG5573@2|Bacteria,1PC1K@1224|Proteobacteria,2V14K@28211|Alphaproteobacteria,1JWQ0@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_6757561_0	1161401.ASJA01000003_gene2914	2.478e-185	584.0	COG0012@1|root,COG0012@2|Bacteria,1MVM4@1224|Proteobacteria,2TRAD@28211|Alphaproteobacteria,43WK2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner	ychF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464	-	ko:K06942	-	-	-	-	ko00000,ko03009	-	-	-	MMR_HSR1,YchF-GTPase_C
DYD3_k127_6757561_24	551789.ATVJ01000002_gene3054	1.998e-22	107.0	2EKMJ@1|root,32FJI@2|Bacteria,1QEYT@1224|Proteobacteria,2V5UZ@28211|Alphaproteobacteria,440I4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6757561_32	1282360.ABAC460_03655	1.381e-08	57.0	COG4783@1|root,COG4783@2|Bacteria	2|Bacteria	L	chaperone-mediated protein folding	-	-	-	-	-	-	-	-	-	-	-	-	TPR_14,TPR_16,TPR_19,TPR_8
DYD3_k127_6757561_6	570967.JMLV01000002_gene1651	1.891e-112	377.0	COG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2TRJ1@28211|Alphaproteobacteria,2JRB0@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Fungal trichothecene efflux pump (TRI12)	-	-	-	ko:K07552	-	-	-	-	ko00000,ko02000	2.A.1.2	-	-	MFS_1
DYD3_k127_6757561_7	1054213.HMPREF9946_01669	6.075e-108	365.0	COG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2TRJ1@28211|Alphaproteobacteria,2JRB0@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Fungal trichothecene efflux pump (TRI12)	-	-	-	ko:K07552	-	-	-	-	ko00000,ko02000	2.A.1.2	-	-	MFS_1
DYD3_k127_6757561_5	314254.OA2633_06544	6.385e-123	403.0	COG2961@1|root,COG2961@2|Bacteria,1MWGA@1224|Proteobacteria,2TU5K@28211|Alphaproteobacteria,43X8A@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Specifically methylates the adenine in position 2030 of 23S rRNA	rlmJ	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008988,GO:0009451,GO:0009987,GO:0010467,GO:0015976,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036307,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.266	ko:K07115	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	RsmJ
DYD3_k127_6757561_30	1205680.CAKO01000002_gene2623	1.805e-11	73.0	28K4W@1|root,2Z9TP@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6757561_29	1217652.F954_02906	4.026e-12	74.0	2BY82@1|root,3033K@2|Bacteria,1QQ2T@1224|Proteobacteria,1TNW0@1236|Gammaproteobacteria,3NRFC@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6758205_22	1380380.JIAX01000008_gene2287	2.566e-40	151.0	COG0256@1|root,COG0256@2|Bacteria,1RGY7@1224|Proteobacteria,2U9A6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance	rplR	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904	-	ko:K02881	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L18p
DYD3_k127_6758205_11	1161401.ASJA01000029_gene100	1.08e-87	292.0	COG0098@1|root,COG0098@2|Bacteria,1MUS4@1224|Proteobacteria,2TSRI@28211|Alphaproteobacteria,43W8F@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body	rpsE	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02988	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S5,Ribosomal_S5_C
DYD3_k127_6758205_26	314260.PB2503_09529	5.807e-16	81.0	COG1841@1|root,COG1841@2|Bacteria,1PU2S@1224|Proteobacteria,2UF55@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Ribosomal protein L30	rpmD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02907	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L30
DYD3_k127_6758205_20	1123503.KB908065_gene1184	6.685e-57	203.0	COG0200@1|root,COG0200@2|Bacteria,1RDC8@1224|Proteobacteria,2U79D@28211|Alphaproteobacteria,2KGNG@204458|Caulobacterales	204458|Caulobacterales	J	binds to the 23S rRNA	rplO	-	-	ko:K02876	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L27A
DYD3_k127_6758205_4	744980.TRICHSKD4_5016	5.713e-193	613.0	COG0201@1|root,COG0201@2|Bacteria,1MVU7@1224|Proteobacteria,2TQMT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently	secY	-	-	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5	-	-	SecY
DYD3_k127_6758205_13	1121948.AUAC01000003_gene2467	1.811e-74	254.0	COG0563@1|root,COG0563@2|Bacteria,1MXCZ@1224|Proteobacteria,2TT6A@28211|Alphaproteobacteria,43XFX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism	adk	-	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ADK,ADK_lid
DYD3_k127_6758205_25	203275.BFO_1928	5.756e-34	143.0	2ES9V@1|root,33JUK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6758205_18	394221.Mmar10_1773	8.576e-61	214.0	COG0099@1|root,COG0099@2|Bacteria,1RD1G@1224|Proteobacteria,2U73D@28211|Alphaproteobacteria,43XSJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	rpsM	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02952	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S13
DYD3_k127_6758205_17	450851.PHZ_c1253	1.889e-64	222.0	COG0100@1|root,COG0100@2|Bacteria,1RD0A@1224|Proteobacteria,2U717@28211|Alphaproteobacteria,2KGAH@204458|Caulobacterales	204458|Caulobacterales	J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	rpsK	-	-	ko:K02948	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S11
DYD3_k127_6758205_5	509190.Cseg_1515	1.797e-174	553.0	COG0202@1|root,COG0202@2|Bacteria,1MU75@1224|Proteobacteria,2TSI0@28211|Alphaproteobacteria,2KFH6@204458|Caulobacterales	204458|Caulobacterales	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoA	-	2.7.7.6	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L
DYD3_k127_6758205_19	1161401.ASJA01000029_gene108	7.966e-59	209.0	COG0203@1|root,COG0203@2|Bacteria,1RCWN@1224|Proteobacteria,2U749@28211|Alphaproteobacteria,43XKV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Ribosomal protein L17	rplQ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02879	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L17
DYD3_k127_6758205_6	314254.OA2633_03516	4.518e-165	536.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TS6B@28211|Alphaproteobacteria,43WNI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Belongs to the peptidase S1C family	htrA2	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ_2,Trypsin_2
DYD3_k127_6758205_14	999547.KI421500_gene1518	3.417e-71	243.0	COG0590@1|root,COG0590@2|Bacteria,1RE8P@1224|Proteobacteria,2U9DE@28211|Alphaproteobacteria,2803F@191028|Leisingera	28211|Alphaproteobacteria	FJ	MafB19-like deaminase	MA20_41730	-	3.5.4.1	ko:K01485	ko00240,ko00330,ko01100,map00240,map00330,map01100	-	R00974,R01411,R02922	RC00074,RC00514,RC00809	ko00000,ko00001,ko01000	-	-	-	dCMP_cyt_deam_1
DYD3_k127_6758205_23	1144343.PMI41_03591	1.051e-37	158.0	COG0346@1|root,COG0346@2|Bacteria,1RGTU@1224|Proteobacteria,2U9R1@28211|Alphaproteobacteria,43KBR@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_6758205_16	1123399.AQVE01000002_gene2462	5.033e-65	227.0	COG2236@1|root,COG2236@2|Bacteria,1MXS1@1224|Proteobacteria,1RPSD@1236|Gammaproteobacteria	1236|Gammaproteobacteria	F	phosphoribosyltransferase	-	-	-	ko:K07101	-	-	-	-	ko00000	-	-	-	Pribosyltran
DYD3_k127_6758205_21	1265313.HRUBRA_01023	1.415e-49	192.0	COG2236@1|root,COG2236@2|Bacteria,1MXS1@1224|Proteobacteria,1RPSD@1236|Gammaproteobacteria	1236|Gammaproteobacteria	F	phosphoribosyltransferase	hpt	-	-	ko:K07101	-	-	-	-	ko00000	-	-	-	Pribosyltran
DYD3_k127_6758205_7	391937.NA2_06368	3.812e-127	435.0	COG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,2TSZ0@28211|Alphaproteobacteria,43KEV@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	-	-	3.5.4.28,3.5.4.31	ko:K12960	ko00270,ko01100,map00270,map01100	-	R09660	RC00477	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1
DYD3_k127_6758205_3	1238182.C882_1709	5.737e-200	638.0	COG0775@1|root,COG0775@2|Bacteria,1MUMQ@1224|Proteobacteria,2TSX1@28211|Alphaproteobacteria,2JRAC@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations	amn	-	3.2.2.4	ko:K01241	ko00230,map00230	-	R00182	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	AMNp_N,PNP_UDP_1
DYD3_k127_6758205_12	1380390.JIAT01000009_gene601	1.265e-74	261.0	COG0005@1|root,COG0005@2|Bacteria,2GKEI@201174|Actinobacteria,4CR8P@84995|Rubrobacteria	84995|Rubrobacteria	F	Phosphorylase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	PNP_UDP_1
DYD3_k127_6758205_15	1282360.ABAC460_10555	2.137e-67	236.0	COG3707@1|root,COG3707@2|Bacteria,1MXDV@1224|Proteobacteria,2U220@28211|Alphaproteobacteria,2KGGA@204458|Caulobacterales	204458|Caulobacterales	K	ANTAR	-	-	-	ko:K07183	-	-	-	-	ko00000,ko02022	-	-	-	ANTAR,Response_reg
DYD3_k127_6758205_9	1282360.ABAC460_10550	9.687e-117	395.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,2KGMS@204458|Caulobacterales	204458|Caulobacterales	P	NMT1-like family	-	-	-	ko:K22067	-	-	-	-	ko00000,ko02022	-	-	-	NMT1_2
DYD3_k127_6758205_10	573065.Astex_1237	2.072e-103	354.0	2C3QV@1|root,2Z7YP@2|Bacteria,1MXAM@1224|Proteobacteria,2UPR9@28211|Alphaproteobacteria,2KI6P@204458|Caulobacterales	204458|Caulobacterales	S	Alginate export	-	-	-	-	-	-	-	-	-	-	-	-	Alginate_exp
DYD3_k127_6758205_2	1353537.TP2_11505	1.753e-228	729.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,2XP47@285107|Thioclava	28211|Alphaproteobacteria	P	NMT1-like family	nasF	-	-	ko:K15576	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16.1,3.A.1.16.2	-	-	NMT1_2
DYD3_k127_6758205_8	1122214.AQWH01000007_gene1801	1.194e-126	416.0	COG0600@1|root,COG0600@2|Bacteria,1MU6Q@1224|Proteobacteria,2TQT6@28211|Alphaproteobacteria,2PK1M@255475|Aurantimonadaceae	28211|Alphaproteobacteria	U	Binding-protein-dependent transport system inner membrane component	nasE	-	-	ko:K02050,ko:K15577	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.16.2,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_6758205_1	1105367.CG50_11360	1.01e-234	739.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TUIC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	ABC-type nitrate sulfonate bicarbonate transport system ATPase component	cmpD_1	-	-	ko:K02049,ko:K15578	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.17	-	-	ABC_tran
DYD3_k127_6758205_0	573065.Astex_2599	0.0	1224.0	COG1251@1|root,COG1251@2|Bacteria,1MW58@1224|Proteobacteria,2TS8I@28211|Alphaproteobacteria,2KF65@204458|Caulobacterales	204458|Caulobacterales	C	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family	-	-	1.7.1.15	ko:K00362	ko00910,ko01120,map00910,map01120	M00530	R00787	RC00176	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,NIR_SIR,NIR_SIR_ferr,Pyr_redox_2
DYD3_k127_6758205_24	69395.JQLZ01000005_gene3855	1.81e-34	144.0	COG2146@1|root,COG2146@2|Bacteria,1N03R@1224|Proteobacteria,2UC33@28211|Alphaproteobacteria,2KGXC@204458|Caulobacterales	204458|Caulobacterales	P	Nitrite reductase NAD(P)H , small subunit	-	-	1.7.1.15	ko:K00363	ko00910,ko01120,map00910,map01120	M00530	R00787	RC00176	ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske
DYD3_k127_678265_12	1535287.JP74_07340	1.911e-45	167.0	COG0832@1|root,COG0832@2|Bacteria,1RGW0@1224|Proteobacteria,2U9T4@28211|Alphaproteobacteria,3N8RI@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	E	Urease beta subunit	ureB	-	3.5.1.5	ko:K01429	ko00220,ko00230,ko00791,ko01100,ko01120,map00220,map00230,map00791,map01100,map01120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Urease_beta
DYD3_k127_678265_16	1429046.RR21198_2523	1.158e-32	132.0	arCOG13037@1|root,3342X@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_678265_0	266779.Meso_2684	1.695e-321	989.0	COG0804@1|root,COG0804@2|Bacteria,1MU5P@1224|Proteobacteria,2TSXP@28211|Alphaproteobacteria,43IB3@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family	ureC	-	3.5.1.5	ko:K01428	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Urease_alpha
DYD3_k127_678265_13	1041138.KB890225_gene6216	8.129e-42	160.0	COG0454@1|root,COG0456@2|Bacteria,1QUS0@1224|Proteobacteria,2TXDS@28211|Alphaproteobacteria,4BEIR@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_678265_11	1122929.KB908218_gene1597	2.187e-46	174.0	COG2371@1|root,COG2371@2|Bacteria,1MZQZ@1224|Proteobacteria,2TVBW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly	ureE	-	-	ko:K03187	-	-	-	-	ko00000	-	-	-	UreE_C,UreE_N
DYD3_k127_678265_10	1254432.SCE1572_13935	4.142e-49	184.0	COG0830@1|root,COG0830@2|Bacteria,1MW8Q@1224|Proteobacteria,42VY4@68525|delta/epsilon subdivisions,2WS0F@28221|Deltaproteobacteria	28221|Deltaproteobacteria	O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter	ureF	-	-	ko:K03188	-	-	-	-	ko00000	-	-	-	UreF
DYD3_k127_678265_5	1122137.AQXF01000003_gene2120	3.63e-107	350.0	COG0378@1|root,COG0378@2|Bacteria,1MVBD@1224|Proteobacteria,2TQMU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KO	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG	ureG	-	-	ko:K03189	-	-	-	-	ko00000	-	-	-	cobW
DYD3_k127_678265_9	1299327.I546_6651	3.189e-50	190.0	COG5285@1|root,COG5285@2|Bacteria,2HSYC@201174|Actinobacteria,23EJ4@1762|Mycobacteriaceae	201174|Actinobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_678265_1	1122613.ATUP01000002_gene2643	1.961e-269	850.0	COG1629@1|root,COG4771@2|Bacteria,1MWKN@1224|Proteobacteria,2U10R@28211|Alphaproteobacteria,43W4Y@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_678265_4	450851.PHZ_c3010	1.244e-154	495.0	COG1816@1|root,COG1816@2|Bacteria,1MWBV@1224|Proteobacteria,2TSBX@28211|Alphaproteobacteria,2KF9N@204458|Caulobacterales	204458|Caulobacterales	F	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism	add	-	3.5.4.2	ko:K21053	ko00230,ko01100,map00230,map01100	-	R01244	RC00477	ko00000,ko00001,ko01000	-	-	-	A_deaminase
DYD3_k127_678265_14	1042377.AFPJ01000051_gene33	1.153e-39	160.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,1RYRB@1236|Gammaproteobacteria,46479@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_678265_2	234267.Acid_5827	7.757e-193	630.0	COG0551@1|root,COG0551@2|Bacteria	2|Bacteria	L	DNA topological change	-	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	PSCyt1,PSCyt3,PSD2,PSD3,PSD4,PSD5,zf-C4_Topoisom
DYD3_k127_678265_6	886293.Sinac_1154	3.546e-103	350.0	COG2960@1|root,COG2960@2|Bacteria,2J2KP@203682|Planctomycetes	203682|Planctomycetes	S	Protein of unknown function (DUF1552)	-	-	-	-	-	-	-	-	-	-	-	-	HXXSHH
DYD3_k127_678265_8	1340493.JNIF01000003_gene3476	1.83e-58	225.0	COG0666@1|root,COG0666@2|Bacteria	2|Bacteria	G	response to abiotic stimulus	moxJ	-	-	ko:K06867	-	-	-	-	ko00000	-	-	-	Ank,Ank_2,Ank_3,Ank_4,Ank_5,SBP_bac_3
DYD3_k127_678265_15	1121033.AUCF01000001_gene1933	3.55e-33	135.0	COG1853@1|root,COG1853@2|Bacteria,1RGYM@1224|Proteobacteria,2UCHI@28211|Alphaproteobacteria,2JT3C@204441|Rhodospirillales	204441|Rhodospirillales	S	COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
DYD3_k127_678265_3	1247963.JPHU01000008_gene2893	1.779e-178	578.0	COG1960@1|root,COG1960@2|Bacteria,1MUK0@1224|Proteobacteria,2TSAC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	-	-	1.3.8.6	ko:K00252	ko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130	M00032	R02487,R02488,R10074	RC00052,RC00156	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_678265_7	1144325.PMI22_00203	7.722e-71	246.0	COG1028@1|root,COG1028@2|Bacteria,1N8G3@1224|Proteobacteria,1RZ80@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_6796021_10	42565.FP66_11010	3.658e-18	93.0	COG1309@1|root,COG1309@2|Bacteria,1MZ9E@1224|Proteobacteria,1SYK2@1236|Gammaproteobacteria,1XMBK@135619|Oceanospirillales	135619|Oceanospirillales	K	AefR-like transcriptional repressor, C-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
DYD3_k127_6796021_9	1380391.JIAS01000011_gene5518	4.439e-40	156.0	COG5496@1|root,COG5496@2|Bacteria,1RKFT@1224|Proteobacteria,2U5DE@28211|Alphaproteobacteria,2JUSB@204441|Rhodospirillales	204441|Rhodospirillales	S	Thioesterase	-	-	3.1.2.29	ko:K18700	-	-	-	-	ko00000,ko01000	-	-	-	4HBT
DYD3_k127_6796021_5	1123503.KB908056_gene1548	6.199e-88	300.0	COG0668@1|root,COG0668@2|Bacteria,1N596@1224|Proteobacteria,2TR7U@28211|Alphaproteobacteria,2KGDE@204458|Caulobacterales	204458|Caulobacterales	M	PFAM MscS Mechanosensitive ion channel	-	-	-	ko:K03442	-	-	-	-	ko00000,ko02000	1.A.23.2	-	-	MS_channel
DYD3_k127_6796021_0	1479238.JQMZ01000001_gene548	6.902e-224	709.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,43ZIU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	exsA	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_6796021_2	1121124.JNIX01000013_gene1624	1.137e-104	346.0	COG0351@1|root,COG0351@2|Bacteria,1MU9J@1224|Proteobacteria,2TUKR@28211|Alphaproteobacteria,2KF47@204458|Caulobacterales	204458|Caulobacterales	H	Phosphomethylpyrimidine kinase	-	-	2.7.1.49,2.7.4.7	ko:K00941	ko00730,ko01100,map00730,map01100	M00127	R03471,R04509	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Phos_pyr_kin
DYD3_k127_6796021_4	1280948.HY36_04750	2.523e-97	332.0	COG0668@1|root,COG0668@2|Bacteria,1MW7V@1224|Proteobacteria,2TT0A@28211|Alphaproteobacteria,43X9P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Small-conductance mechanosensitive channel	-	-	-	-	-	-	-	-	-	-	-	-	MS_channel
DYD3_k127_6796021_1	1479238.JQMZ01000001_gene1360	1.797e-117	388.0	COG0026@1|root,COG0026@2|Bacteria,1MU70@1224|Proteobacteria,2TRSV@28211|Alphaproteobacteria,43WFZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)	purK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	6.3.4.18	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07404	RC01927	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp
DYD3_k127_6796021_7	1248917.ANFX01000026_gene1031	5.995e-65	227.0	COG0041@1|root,COG0041@2|Bacteria,1RCWJ@1224|Proteobacteria,2U58D@28211|Alphaproteobacteria,2K3Z8@204457|Sphingomonadales	204457|Sphingomonadales	F	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)	purE	-	5.4.99.18	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07405	RC01947	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRC
DYD3_k127_6796021_8	1380391.JIAS01000015_gene105	1.681e-49	185.0	COG2199@1|root,COG2199@2|Bacteria,1Q7FU@1224|Proteobacteria,2TRE7@28211|Alphaproteobacteria,2JS68@204441|Rhodospirillales	204441|Rhodospirillales	T	Diguanylate cyclase, GGDEF domain	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
DYD3_k127_6796021_11	395965.Msil_1940	7.427e-17	81.0	COG5481@1|root,COG5481@2|Bacteria,1NG9U@1224|Proteobacteria,2UFXJ@28211|Alphaproteobacteria,3NBPI@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF465)	MA20_03740	-	-	-	-	-	-	-	-	-	-	-	DUF465
DYD3_k127_6796021_12	1282360.ABAC460_19370	7.177e-15	83.0	COG5589@1|root,COG5589@2|Bacteria,1N6W5@1224|Proteobacteria,2UFIE@28211|Alphaproteobacteria,2KH5P@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF2390)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2390
DYD3_k127_6796021_6	509190.Cseg_0631	4.23e-75	263.0	COG0163@1|root,COG0163@2|Bacteria,1RA0P@1224|Proteobacteria,2U5GN@28211|Alphaproteobacteria,2KFC4@204458|Caulobacterales	204458|Caulobacterales	H	Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN	ubiX	-	2.5.1.129	ko:K03186	ko00130,ko00627,ko00940,ko01100,ko01110,ko01120,ko01220,map00130,map00627,map00940,map01100,map01110,map01120,map01220	M00117	R01238,R02952,R03367,R04985,R04986,R11225	RC00391,RC00814,RC03392	ko00000,ko00001,ko00002,ko01000	-	-	-	Flavoprotein
DYD3_k127_6796021_13	318586.Pden_2028	7.778e-07	53.0	COG5570@1|root,COG5570@2|Bacteria,1NGRE@1224|Proteobacteria,2UJAX@28211|Alphaproteobacteria,2PXW7@265|Paracoccus	28211|Alphaproteobacteria	S	Protein of unknown function (DUF465)	-	-	-	-	-	-	-	-	-	-	-	-	DUF465
DYD3_k127_6796021_3	1161401.ASJA01000013_gene740	4.307e-100	334.0	COG1028@1|root,COG1028@2|Bacteria,1MVQW@1224|Proteobacteria,2TUA2@28211|Alphaproteobacteria,440NN@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	KR domain	bacC	-	1.1.1.159	ko:K00076	ko00121,map00121	-	-	-	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
DYD3_k127_6836293_1	1122613.ATUP01000001_gene2363	2.07e-225	726.0	COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria,2TRZD@28211|Alphaproteobacteria,43ZG1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	Cation transporter/ATPase, N-terminus	-	-	3.6.3.8	ko:K01537	-	-	-	-	ko00000,ko01000	3.A.3.2	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3
DYD3_k127_6836293_5	1123229.AUBC01000032_gene3769	1.427e-37	148.0	COG4635@1|root,COG4635@2|Bacteria,1RAH2@1224|Proteobacteria,2UB32@28211|Alphaproteobacteria	28211|Alphaproteobacteria	CH	Flavodoxin domain	-	-	1.3.5.3	ko:K00230	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R09489	RC00885	ko00000,ko00001,ko00002,ko01000	-	-	-	Flavodoxin_5
DYD3_k127_6836293_0	402881.Plav_1969	2.902e-305	960.0	COG0045@1|root,COG0454@1|root,COG1042@1|root,COG0045@2|Bacteria,COG0454@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,1JNHE@119043|Rhodobiaceae	28211|Alphaproteobacteria	CJ	ATP-grasp domain	yfiQ	-	-	ko:K09181	-	-	-	-	ko00000	-	-	-	ATP-grasp_5,Acetyltransf_1,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
DYD3_k127_6836293_9	1280952.HJA_16086	5.986e-16	85.0	COG2010@1|root,COG2010@2|Bacteria,1N8V1@1224|Proteobacteria,2UG8G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C,Cytochrome_CBB3
DYD3_k127_6836293_8	648885.KB316284_gene4945	1.152e-16	85.0	COG2010@1|root,COG2010@2|Bacteria,1N8V1@1224|Proteobacteria,2UG8G@28211|Alphaproteobacteria,1JVEU@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	Cytochrome c, class I	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C,Cytochrome_CBB3
DYD3_k127_6836293_2	394221.Mmar10_0239	3.644e-207	653.0	COG0446@1|root,COG0446@2|Bacteria,1QSG6@1224|Proteobacteria,2TUP1@28211|Alphaproteobacteria,43XCB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Oxidoreductase	sqr	-	1.8.5.4	ko:K17218	ko00920,map00920	-	R10152	RC03155	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD3_k127_6836293_6	1122613.ATUP01000001_gene1798	6.651e-36	139.0	2BH9T@1|root,32BB9@2|Bacteria,1PXUM@1224|Proteobacteria,2UH9D@28211|Alphaproteobacteria,43ZXG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6836293_7	1123054.KB907721_gene2992	4.889e-23	104.0	COG0607@1|root,32YCZ@2|Bacteria,1N6NN@1224|Proteobacteria,1SCRA@1236|Gammaproteobacteria,1WYYY@135613|Chromatiales	135613|Chromatiales	P	Protein of unknown function (DUF2892)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2892
DYD3_k127_6836293_4	1089552.KI911559_gene1707	2.405e-41	160.0	COG3658@1|root,COG3658@2|Bacteria,1RB03@1224|Proteobacteria,2VGBI@28211|Alphaproteobacteria,2JTFK@204441|Rhodospirillales	204441|Rhodospirillales	C	Prokaryotic cytochrome b561	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
DYD3_k127_6836293_3	266779.Meso_2286	9.142e-96	317.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,43GVM@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_6870519_3	394221.Mmar10_0627	6.661e-154	497.0	COG0151@1|root,COG0151@2|Bacteria,1MUAH@1224|Proteobacteria,2TQR5@28211|Alphaproteobacteria,43WCH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the GARS family	purD	-	6.3.4.13	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04144	RC00090,RC00166	ko00000,ko00001,ko00002,ko01000	-	-	-	GARS_A,GARS_C,GARS_N
DYD3_k127_6870519_2	414684.RC1_0026	2.253e-171	545.0	COG3540@1|root,COG3540@2|Bacteria,1R5RU@1224|Proteobacteria,2U4KZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	COG3540 Phosphodiesterase alkaline phosphatase D	-	-	3.1.3.1	ko:K01113	ko00790,ko01100,ko02020,map00790,map01100,map02020	M00126	R04620	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PhoD
DYD3_k127_6870519_0	414684.RC1_0027	3.123e-276	872.0	COG1629@1|root,COG4771@2|Bacteria,1R9TW@1224|Proteobacteria,2TTKV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_6870519_6	234267.Acid_4191	3.291e-37	145.0	COG3324@1|root,COG3324@2|Bacteria	2|Bacteria	E	translation initiation factor activity	-	-	-	ko:K06996	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_6870519_5	366602.Caul_4458	1.206e-56	214.0	COG2207@1|root,COG2207@2|Bacteria,1P1FH@1224|Proteobacteria,2TRGB@28211|Alphaproteobacteria,2KHDI@204458|Caulobacterales	204458|Caulobacterales	K	AraC-like ligand binding domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,HTH_18
DYD3_k127_6870519_1	1121124.JNIX01000008_gene2648	1.216e-188	608.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TRAP@28211|Alphaproteobacteria,2KEXI@204458|Caulobacterales	204458|Caulobacterales	EGP	Major Facilitator	-	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
DYD3_k127_6870519_4	627192.SLG_27300	1.731e-115	388.0	COG3670@1|root,COG3670@2|Bacteria,1NR29@1224|Proteobacteria,2UNTM@28211|Alphaproteobacteria,2K8W8@204457|Sphingomonadales	204457|Sphingomonadales	C	Retinal pigment epithelial membrane protein	-	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_6873334_3	1156935.QWE_17708	1.011e-60	214.0	COG3384@1|root,COG3384@2|Bacteria,1MXJZ@1224|Proteobacteria,2TRJT@28211|Alphaproteobacteria,4BARI@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Catalytic LigB subunit of aromatic ring-opening dioxygenase	MA20_02555	-	-	-	-	-	-	-	-	-	-	-	LigB
DYD3_k127_6873334_4	314254.OA2633_06594	4.869e-60	214.0	COG1309@1|root,COG1309@2|Bacteria,1MVQV@1224|Proteobacteria,2TRPA@28211|Alphaproteobacteria,43YY8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	MA20_09445	-	-	-	-	-	-	-	-	-	-	-	TetR_C_11,TetR_N
DYD3_k127_6873334_2	314254.OA2633_06599	8.366e-73	265.0	COG0845@1|root,COG0845@2|Bacteria,1R3U4@1224|Proteobacteria,2TW9A@28211|Alphaproteobacteria,43ZQD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Biotin-lipoyl like	MA20_09450	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3
DYD3_k127_6873334_0	394221.Mmar10_0505	2.724e-140	469.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TR2P@28211|Alphaproteobacteria,43Z13@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG1131 ABC-type multidrug transport system, ATPase component	MA20_09455	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_6873334_1	314254.OA2633_06609	2.513e-105	354.0	COG0842@1|root,COG0842@2|Bacteria,1MW5R@1224|Proteobacteria,2TU59@28211|Alphaproteobacteria,43XA1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	COG0842 ABC-type multidrug transport system, permease component	MA20_09460	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD3_k127_689314_0	394221.Mmar10_1506	6.308e-183	592.0	COG0608@1|root,COG0608@2|Bacteria,1MU1M@1224|Proteobacteria,2TRZQ@28211|Alphaproteobacteria,43X07@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Exonuclease RecJ	recJ	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360	-	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DHH,DHHA1
DYD3_k127_689314_1	551275.KB899544_gene1663	4.7e-83	280.0	COG1494@1|root,COG1494@2|Bacteria,1MUB1@1224|Proteobacteria,2TSPE@28211|Alphaproteobacteria,43WR4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	in Escherichia coli this protein forms a dimer and binds manganese	glpX	-	3.1.3.11,3.1.3.37	ko:K02446,ko:K11532	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00165,M00167	R00762,R01845,R04780	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FBPase_glpX
DYD3_k127_6898147_3	1207055.C100_08025	1.331e-39	166.0	28KET@1|root,2ZA11@2|Bacteria,1PPW8@1224|Proteobacteria,2USAI@28211|Alphaproteobacteria,2KAD9@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6898147_1	1280954.HPO_01250	1.261e-80	281.0	COG1708@1|root,COG1708@2|Bacteria,1PWC5@1224|Proteobacteria,2TT5M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	nucleotidyltransferase	-	-	-	ko:K07076	-	-	-	-	ko00000	-	-	-	HEPN,NTP_transf_2
DYD3_k127_6898147_0	1502850.FG91_00816	1.466e-207	658.0	COG3177@1|root,COG3177@2|Bacteria,1MX0V@1224|Proteobacteria,2U26G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Fic/DOC family	-	-	-	-	-	-	-	-	-	-	-	-	Fic
DYD3_k127_6898147_4	1177928.TH2_15617	1.666e-15	79.0	COG0457@1|root,COG0457@2|Bacteria,1R8JA@1224|Proteobacteria,2V9GZ@28211|Alphaproteobacteria,2JXVU@204441|Rhodospirillales	204441|Rhodospirillales	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6898147_2	1082933.MEA186_09620	1.19e-53	193.0	COG3920@1|root,COG3920@2|Bacteria,1NU8D@1224|Proteobacteria,2U4H4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	HWE histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HWE_HK,PAS_9
DYD3_k127_6898147_5	118166.JH976537_gene2611	3.012e-15	85.0	COG1672@1|root,COG1672@2|Bacteria,1G0F4@1117|Cyanobacteria,1H73P@1150|Oscillatoriales	1117|Cyanobacteria	KLT	K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit	-	-	-	-	-	-	-	-	-	-	-	-	AAA_35,CHAT,Guanylate_cyc,Pkinase,TIR_2
DYD3_k127_6898147_7	1246995.AFR_40880	6.212e-11	77.0	COG1361@1|root,COG2304@1|root,COG1361@2|Bacteria,COG2304@2|Bacteria,2I8F1@201174|Actinobacteria,4DFBB@85008|Micromonosporales	201174|Actinobacteria	M	Conserved repeat domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF11,DUF3344
DYD3_k127_6903584_13	1449049.JONW01000006_gene2932	2.241e-26	116.0	COG2913@1|root,COG2913@2|Bacteria,1RJS2@1224|Proteobacteria,2UDWH@28211|Alphaproteobacteria,2KH9V@204458|Caulobacterales	204458|Caulobacterales	J	Protein of unknown function (DUF3574)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3574
DYD3_k127_6903584_3	1121949.AQXT01000002_gene2315	8.955e-144	458.0	COG0479@1|root,COG0479@2|Bacteria,1MVHS@1224|Proteobacteria,2TQYF@28211|Alphaproteobacteria,43X0U@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family	sdhB	-	1.3.5.1,1.3.5.4	ko:K00240	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_3,Fer4_10,Fer4_17,Fer4_8
DYD3_k127_6903584_5	59538.XP_005981185.1	1.433e-110	376.0	2CMC3@1|root,2QPXZ@2759|Eukaryota,38CYT@33154|Opisthokonta	33154|Opisthokonta	G	feruloyl esterase activity	faeB-1	GO:0000272,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010393,GO:0010410,GO:0016052,GO:0016787,GO:0016788,GO:0016998,GO:0017144,GO:0030600,GO:0042737,GO:0042802,GO:0042803,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0045488,GO:0045490,GO:0045491,GO:0045493,GO:0046983,GO:0052689,GO:0071554,GO:0071704,GO:1901575	3.1.1.73	ko:K09252	-	-	-	-	ko00000,ko01000	-	-	-	Tannase
DYD3_k127_6903584_8	279238.Saro_2964	1.36e-92	313.0	COG0491@1|root,COG0491@2|Bacteria,1NGQE@1224|Proteobacteria,2TUZS@28211|Alphaproteobacteria,2KA9U@204457|Sphingomonadales	204457|Sphingomonadales	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6903584_7	1123503.KB908056_gene1897	1.714e-99	334.0	COG0204@1|root,COG0204@2|Bacteria,1QU3F@1224|Proteobacteria,2U0QJ@28211|Alphaproteobacteria,2KG3R@204458|Caulobacterales	204458|Caulobacterales	I	Acyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acyltransferase
DYD3_k127_6903584_10	1547437.LL06_17665	5.657e-68	240.0	COG0394@1|root,COG0394@2|Bacteria,1MWYQ@1224|Proteobacteria,2TU1U@28211|Alphaproteobacteria,43J6K@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	T	Belongs to the low molecular weight phosphotyrosine protein phosphatase family	-	-	1.20.4.1	ko:K03741	-	-	-	-	ko00000,ko01000	-	-	-	HTH_20,LMWPc
DYD3_k127_6903584_11	314231.FP2506_15474	3.75e-62	231.0	COG0580@1|root,COG0580@2|Bacteria,1PPTN@1224|Proteobacteria,2TW8M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Belongs to the MIP aquaporin (TC 1.A.8) family	aqpZ	-	-	-	-	-	-	-	-	-	-	-	MIP
DYD3_k127_6903584_0	59538.XP_005973540.1	3.354e-250	784.0	KOG2449@1|root,KOG2449@2759|Eukaryota,38EU5@33154|Opisthokonta,3BBIA@33208|Metazoa,3CTRG@33213|Bilateria,48BFM@7711|Chordata,49263@7742|Vertebrata,3JDTJ@40674|Mammalia,4J4QW@91561|Cetartiodactyla	33208|Metazoa	EG	Methylmalonate-semialdehyde dehydrogenase acylating	alh-8	GO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0004491,GO:0005488,GO:0006082,GO:0006139,GO:0006206,GO:0006520,GO:0006573,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009081,GO:0009112,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0017076,GO:0018478,GO:0019752,GO:0019859,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0048037,GO:0050662,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901567,GO:1901605,GO:1901681	1.2.1.18,1.2.1.27	ko:K00140	ko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200	M00013	R00705,R00706,R00922,R00935	RC00004,RC02723,RC02817	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_6903584_15	1229204.AMYY01000013_gene203	3.082e-14	83.0	2E6T7@1|root,331D5@2|Bacteria,1N7TB@1224|Proteobacteria,2UHH6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6903584_6	1123503.KB908056_gene1902	1.069e-104	352.0	COG1485@1|root,COG1485@2|Bacteria,1MUUW@1224|Proteobacteria,2TRG1@28211|Alphaproteobacteria,2KF8I@204458|Caulobacterales	204458|Caulobacterales	S	PFAM AFG1-family ATPase	-	-	-	ko:K06916	-	-	-	-	ko00000,ko03036	-	-	-	AFG1_ATPase
DYD3_k127_6903584_1	394221.Mmar10_2829	2.099e-178	562.0	COG0039@1|root,COG0039@2|Bacteria,1MV57@1224|Proteobacteria,2TSV6@28211|Alphaproteobacteria,43WMI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Catalyzes the reversible oxidation of malate to oxaloacetate	mdh	GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	1.1.1.37	ko:K00024	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740	R00342,R07136	RC00031	ko00000,ko00001,ko00002,ko01000	-	-	-	Ldh_1_C,Ldh_1_N
DYD3_k127_6903584_16	1028800.RG540_CH09320	2.235e-07	59.0	COG4113@1|root,COG4113@2|Bacteria,1N7ET@1224|Proteobacteria,2UG7M@28211|Alphaproteobacteria,4BG2A@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	PIN domain	-	-	-	ko:K07065	-	-	-	-	ko00000	-	-	-	PIN
DYD3_k127_6903584_17	1297863.APJF01000016_gene4267	0.0003129	47.0	COG0452@1|root,COG0452@2|Bacteria,1MVQP@1224|Proteobacteria,2TRN1@28211|Alphaproteobacteria,3JSH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine	coaBC	-	4.1.1.36,6.3.2.5	ko:K13038,ko:K21977	ko00770,ko01100,map00770,map01100	M00120	R03269,R04231	RC00064,RC00090,RC00822	ko00000,ko00001,ko00002,ko01000	-	-	-	DFP,Flavoprotein
DYD3_k127_6903584_4	1123020.AUIE01000005_gene4232	3.591e-115	381.0	COG4638@1|root,COG4638@2|Bacteria,1MV2G@1224|Proteobacteria,1RYCK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit	-	-	1.14.15.23	ko:K22325	-	-	-	-	ko00000,ko01000	-	-	-	Rieske
DYD3_k127_6903584_14	1282876.BAOK01000001_gene1896	2.93e-19	92.0	COG1017@1|root,COG1017@2|Bacteria,1QVJP@1224|Proteobacteria,2U5M6@28211|Alphaproteobacteria,4BSEB@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Globin	MA20_17055	-	1.14.12.17	ko:K05916	ko05132,map05132	-	-	-	ko00000,ko00001,ko01000	-	-	-	Globin
DYD3_k127_6903584_12	394221.Mmar10_2827	7.91e-53	210.0	COG1670@1|root,COG1670@2|Bacteria,1RD77@1224|Proteobacteria,2U851@28211|Alphaproteobacteria,43XRP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins	-	-	2.3.1.128	ko:K03790	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_3
DYD3_k127_6903584_9	1161401.ASJA01000021_gene654	9.148e-86	300.0	COG0477@1|root,COG2814@2|Bacteria,1MVUF@1224|Proteobacteria,2TU4M@28211|Alphaproteobacteria,43X6Q@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EGP	COG0477 Permeases of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_1_like
DYD3_k127_6903584_2	1121479.AUBS01000005_gene2717	6.113e-169	539.0	COG0045@1|root,COG0045@2|Bacteria,1MVCE@1224|Proteobacteria,2TRXK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	sucC	GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,Ligase_CoA
DYD3_k127_6906381_0	522373.Smlt2569	9.139e-275	869.0	COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,1RMA0@1236|Gammaproteobacteria,1X38M@135614|Xanthomonadales	135614|Xanthomonadales	G	COG1472 Beta-glucosidase-related glycosidases	celD	-	3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	-	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000	-	GH3	-	Glyco_hydro_3,Glyco_hydro_3_C
DYD3_k127_6906381_1	1123270.ATUR01000004_gene1679	6.072e-63	223.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TV11@28211|Alphaproteobacteria,2K0M0@204457|Sphingomonadales	204457|Sphingomonadales	J	Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
DYD3_k127_6934809_1	1161401.ASJA01000004_gene2157	1.099e-112	377.0	COG1680@1|root,COG1680@2|Bacteria,1P3SQ@1224|Proteobacteria,2TTI5@28211|Alphaproteobacteria,43XFI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	Beta-lactamase	nylB	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_6934809_7	1120792.JAFV01000001_gene1824	3.076e-29	123.0	2BNNA@1|root,32HB8@2|Bacteria,1R624@1224|Proteobacteria,2U216@28211|Alphaproteobacteria,36YX2@31993|Methylocystaceae	28211|Alphaproteobacteria	-	-	MA20_42065	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6934809_6	715226.ABI_40260	2.053e-33	132.0	COG3324@1|root,COG3324@2|Bacteria,1N0AD@1224|Proteobacteria,2UD6F@28211|Alphaproteobacteria,2KGQD@204458|Caulobacterales	204458|Caulobacterales	S	Glyoxalase bleomycin resistance protein dioxygenase	-	-	-	ko:K06996	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_6934809_3	1161401.ASJA01000019_gene1137	2.069e-65	227.0	COG0105@1|root,COG0105@2|Bacteria,1R9ZA@1224|Proteobacteria,2U5CS@28211|Alphaproteobacteria,43XMA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate	ndk	GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564	2.7.4.6	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	M00049,M00050,M00052,M00053	R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895	RC00002	ko00000,ko00001,ko00002,ko01000,ko04131	-	-	-	NDK
DYD3_k127_6934809_4	1380394.JADL01000008_gene3449	3.848e-44	170.0	COG3812@1|root,COG3812@2|Bacteria,1RGUV@1224|Proteobacteria,2U9BA@28211|Alphaproteobacteria,2JTI2@204441|Rhodospirillales	204441|Rhodospirillales	S	Domain of unknown function (DUF1993)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1993
DYD3_k127_6934809_2	349163.Acry_2538	5.211e-72	248.0	COG0299@1|root,COG0299@2|Bacteria,1MWN1@1224|Proteobacteria,2TRY6@28211|Alphaproteobacteria,2JVTG@204441|Rhodospirillales	204441|Rhodospirillales	F	Formyl transferase	-	-	2.1.2.2	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	M00048	R04325,R04326	RC00026,RC00197,RC01128	ko00000,ko00001,ko00002,ko01000	-	-	-	Formyl_trans_N
DYD3_k127_6934809_0	314254.OA2633_01069	6.179e-139	452.0	COG0150@1|root,COG0150@2|Bacteria,1MURG@1224|Proteobacteria,2TR6G@28211|Alphaproteobacteria,43W6D@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Phosphoribosylformylglycinamidine cyclo-ligase	purM	-	6.3.3.1	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04208	RC01100	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_6934809_5	1161401.ASJA01000019_gene1134	1.344e-38	168.0	COG3249@1|root,COG3249@2|Bacteria,1RE2R@1224|Proteobacteria,2U7HJ@28211|Alphaproteobacteria,43XUT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2066)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2066
DYD3_k127_6967415_2	670292.JH26_10020	2.376e-109	362.0	COG2801@1|root,COG2801@2|Bacteria,1MWNX@1224|Proteobacteria,2TZ7M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	LZ_Tnp_IS481,rve,rve_3
DYD3_k127_6967415_1	1280946.HY29_12945	1.312e-115	383.0	COG0334@1|root,COG0334@2|Bacteria,1MUXS@1224|Proteobacteria,2VGKD@28211|Alphaproteobacteria,43WGI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Belongs to the Glu Leu Phe Val dehydrogenases family	-	-	1.4.1.9	ko:K00263	ko00280,ko00290,ko01100,ko01110,ko01130,map00280,map00290,map01100,map01110,map01130	-	R01088,R01434,R02196	RC00006,RC00036	ko00000,ko00001,ko01000	-	-	-	ELFV_dehydrog,ELFV_dehydrog_N
DYD3_k127_6967415_3	582402.Hbal_2408	7.605e-94	339.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,43X6J@69657|Hyphomonadaceae	28211|Alphaproteobacteria	NT	Protoglobin	-	-	-	-	-	-	-	-	-	-	-	-	MCPsignal,Protoglobin
DYD3_k127_6967415_4	1382303.JPOM01000001_gene975	2.474e-83	293.0	COG2267@1|root,COG2267@2|Bacteria,1MWF5@1224|Proteobacteria,2TV6U@28211|Alphaproteobacteria,2KF03@204458|Caulobacterales	204458|Caulobacterales	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
DYD3_k127_6967415_5	394221.Mmar10_0962	5.743e-66	233.0	COG1573@1|root,COG1573@2|Bacteria,1R9XV@1224|Proteobacteria,2TSWU@28211|Alphaproteobacteria,43XM7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	COG1573 Uracil-DNA glycosylase	-	-	-	-	-	-	-	-	-	-	-	-	UDG
DYD3_k127_6967415_0	1280954.HPO_18133	5.758e-277	876.0	COG4774@1|root,COG4774@2|Bacteria,1NMCN@1224|Proteobacteria,2TYWN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_6974823_7	670292.JH26_10020	3.682e-06	48.0	COG2801@1|root,COG2801@2|Bacteria,1MWNX@1224|Proteobacteria,2TZ7M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	LZ_Tnp_IS481,rve,rve_3
DYD3_k127_6974823_2	1430440.MGMSRv2_3493	6.199e-133	440.0	COG2089@1|root,COG2089@2|Bacteria,1MWG3@1224|Proteobacteria,2TRA6@28211|Alphaproteobacteria,2JRJX@204441|Rhodospirillales	204441|Rhodospirillales	M	COG2089 Sialic acid synthase	-	-	-	-	-	-	-	-	-	-	-	-	NeuB,SAF
DYD3_k127_6974823_1	709797.CSIRO_3855	1.155e-138	452.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2TRIQ@28211|Alphaproteobacteria,3JSRK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the DegT DnrJ EryC1 family	-	-	-	-	-	-	-	-	-	-	-	-	DegT_DnrJ_EryC1
DYD3_k127_6974823_3	570967.JMLV01000004_gene506	1.966e-128	420.0	COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria,2TT4K@28211|Alphaproteobacteria,2JPRH@204441|Rhodospirillales	204441|Rhodospirillales	M	Polysaccharide biosynthesis protein	-	-	4.2.1.115	ko:K13013,ko:K15894	ko00520,map00520	-	R09697	RC02609	ko00000,ko00001,ko01000,ko01005	-	-	-	Polysacc_synt_2
DYD3_k127_6974823_0	450851.PHZ_c2988	1.03e-168	541.0	COG0477@1|root,COG0477@2|Bacteria,1MVZG@1224|Proteobacteria,2TRS1@28211|Alphaproteobacteria,2KFK8@204458|Caulobacterales	204458|Caulobacterales	EGP	transporter	-	-	-	ko:K03761	-	-	-	-	ko00000,ko02000	2.A.1.6.2	-	-	Sugar_tr
DYD3_k127_6974823_6	1268622.AVS7_03901	2.655e-18	86.0	COG4430@1|root,COG4430@2|Bacteria,1NASK@1224|Proteobacteria	1224|Proteobacteria	S	Bacteriocin-protection, YdeI or OmpD-Associated	-	-	-	-	-	-	-	-	-	-	-	-	OmdA
DYD3_k127_6974823_4	1244869.H261_08933	3.06e-62	222.0	COG1861@1|root,COG1861@2|Bacteria,1RG42@1224|Proteobacteria,2UABZ@28211|Alphaproteobacteria,2JSG9@204441|Rhodospirillales	204441|Rhodospirillales	M	Cytidylyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	CTP_transf_3
DYD3_k127_6974823_5	1123503.KB908056_gene1312	6.466e-58	208.0	COG0500@1|root,COG2226@2|Bacteria,1QYPB@1224|Proteobacteria,2TXU7@28211|Alphaproteobacteria,2KIP5@204458|Caulobacterales	204458|Caulobacterales	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_6981511_2	383381.EH30_06100	3.116e-74	262.0	COG0500@1|root,COG2226@2|Bacteria,1PPKI@1224|Proteobacteria,2TRIB@28211|Alphaproteobacteria,2K0RA@204457|Sphingomonadales	204457|Sphingomonadales	Q	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_6981511_6	1429916.X566_05805	7.08e-48	178.0	COG0432@1|root,COG0432@2|Bacteria,1RH13@1224|Proteobacteria,2U945@28211|Alphaproteobacteria,3JYEH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family UPF0047	-	-	-	-	-	-	-	-	-	-	-	-	UPF0047
DYD3_k127_6981511_3	1292034.OR37_02028	1.725e-66	236.0	COG2267@1|root,COG2267@2|Bacteria,1N8UK@1224|Proteobacteria,2U35V@28211|Alphaproteobacteria,2KG36@204458|Caulobacterales	204458|Caulobacterales	I	PFAM alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_6981511_8	1292034.OR37_01072	2.959e-23	106.0	293ZC@1|root,2ZREC@2|Bacteria,1RDYU@1224|Proteobacteria,2U7U4@28211|Alphaproteobacteria,2KJCE@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6981511_5	399739.Pmen_0809	2.726e-57	207.0	COG2910@1|root,COG2910@2|Bacteria,1MV9B@1224|Proteobacteria,1S0ZG@1236|Gammaproteobacteria,1YG0Z@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	S	NmrA-like family	-	-	-	ko:K07118	-	-	-	-	ko00000	-	-	-	NAD_binding_10
DYD3_k127_6981511_1	216591.BCAM2645	2.61e-114	398.0	COG1090@1|root,COG1090@2|Bacteria,1MUB4@1224|Proteobacteria,2VK3U@28216|Betaproteobacteria,1K94P@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Domain of unknown function (DUF1731)	-	-	-	ko:K07071	-	-	-	-	ko00000	-	-	-	DUF1731,Epimerase
DYD3_k127_6981511_7	715226.ABI_45580	9.549e-31	134.0	29Q66@1|root,30B54@2|Bacteria,1N9YZ@1224|Proteobacteria,2TS6J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4166)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4166
DYD3_k127_6981511_4	748658.KB907321_gene848	6.689e-61	215.0	COG1510@1|root,COG1510@2|Bacteria,1RA49@1224|Proteobacteria,1RRGB@1236|Gammaproteobacteria,1X08N@135613|Chromatiales	135613|Chromatiales	K	Bacterial regulatory protein, arsR family	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
DYD3_k127_6981511_0	1056820.KB900640_gene290	1.511e-246	787.0	COG3794@1|root,COG3794@2|Bacteria,1R29B@1224|Proteobacteria	1224|Proteobacteria	C	G8	-	-	-	-	-	-	-	-	-	-	-	-	G8
DYD3_k127_7000668_11	450851.PHZ_c0022	1.122e-113	374.0	COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,2TRZU@28211|Alphaproteobacteria,2KF3N@204458|Caulobacterales	204458|Caulobacterales	CH	Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family	-	-	-	ko:K03185	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04989,R08773	RC02670	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3,SE
DYD3_k127_7000668_29	314254.OA2633_11233	4.179e-36	143.0	COG3536@1|root,COG3536@2|Bacteria,1MZ5M@1224|Proteobacteria,2U9GJ@28211|Alphaproteobacteria,440PA@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF971)	-	-	-	-	-	-	-	-	-	-	-	-	DUF971
DYD3_k127_7000668_35	450851.PHZ_c0021	3.234e-18	97.0	COG2835@1|root,COG2835@2|Bacteria,1N6Y2@1224|Proteobacteria,2UF4N@28211|Alphaproteobacteria,2KHAU@204458|Caulobacterales	204458|Caulobacterales	S	Belongs to the UPF0434 family	-	-	-	ko:K09791	-	-	-	-	ko00000	-	-	-	Trm112p
DYD3_k127_7000668_18	1280953.HOC_10898	4.767e-69	240.0	COG2802@1|root,COG2802@2|Bacteria,1NV9N@1224|Proteobacteria,2TQZ4@28211|Alphaproteobacteria,43XV8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	to the N-terminal domain of Lon protease	lonD	-	3.4.21.53	ko:K01338,ko:K07157	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	LON_substr_bdg
DYD3_k127_7000668_12	1161401.ASJA01000002_gene2740	3.233e-94	319.0	COG3118@1|root,COG3118@2|Bacteria,1MV0R@1224|Proteobacteria,2TS5X@28211|Alphaproteobacteria,43WE6@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	COG3118 Thioredoxin domain-containing protein	trxA2	-	-	ko:K03671,ko:K05838	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	TPR_19,TPR_20,Thioredoxin
DYD3_k127_7000668_22	1479238.JQMZ01000001_gene515	9.008e-59	210.0	COG3760@1|root,COG3760@2|Bacteria,1RDIG@1224|Proteobacteria,2U87T@28211|Alphaproteobacteria,43XX0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	YbaK prolyl-tRNA synthetase	-	-	-	ko:K19055	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	tRNA_edit
DYD3_k127_7000668_27	190650.CC_3555	7.056e-41	164.0	COG1597@1|root,COG1597@2|Bacteria,1RB1K@1224|Proteobacteria,2U6JV@28211|Alphaproteobacteria,2KGEJ@204458|Caulobacterales	204458|Caulobacterales	I	Diacylglycerol kinase catalytic	-	-	-	-	-	-	-	-	-	-	-	-	DAGK_cat
DYD3_k127_7000668_25	190650.CC_3556	2.89e-42	168.0	COG1409@1|root,COG1409@2|Bacteria,1MW6B@1224|Proteobacteria,2U83Q@28211|Alphaproteobacteria,2KH0Y@204458|Caulobacterales	204458|Caulobacterales	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos,Metallophos_2
DYD3_k127_7000668_15	627192.SLG_05210	8.889e-86	289.0	2CPHS@1|root,32SJ6@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7000668_14	698761.RTCIAT899_CH14760	3.273e-86	293.0	COG1028@1|root,COG1028@2|Bacteria,1P9R4@1224|Proteobacteria,2TUAM@28211|Alphaproteobacteria,4BCW7@82115|Rhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_7000668_10	290400.Jann_3479	1.934e-114	388.0	COG0596@1|root,COG0596@2|Bacteria,1MWVN@1224|Proteobacteria,2TQVB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	epoxide hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	EHN
DYD3_k127_7000668_7	1121861.KB899938_gene4013	9.997e-138	453.0	COG0108@1|root,COG0108@2|Bacteria,1MU8P@1224|Proteobacteria,2TSMA@28211|Alphaproteobacteria,2JQC7@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate	ribA	-	3.5.4.25,4.1.99.12	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	M00125,M00840	R00425,R07281	RC00293,RC01792,RC01815,RC02504	ko00000,ko00001,ko00002,ko01000	-	-	-	DHBP_synthase,GTP_cyclohydro2
DYD3_k127_7000668_9	1161401.ASJA01000024_gene199	3.312e-119	404.0	COG0729@1|root,COG0729@2|Bacteria,1MUKM@1224|Proteobacteria,2TRWD@28211|Alphaproteobacteria,43WF0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0729 Outer membrane protein	tamA	-	-	ko:K07278	-	-	-	-	ko00000,ko02000	1.B.33.2.4	-	-	Bac_surface_Ag,POTRA
DYD3_k127_7000668_8	1121124.JNIX01000007_gene359	7.93e-128	457.0	COG2911@1|root,COG2911@2|Bacteria,1MUVD@1224|Proteobacteria,2TR45@28211|Alphaproteobacteria,2KFIH@204458|Caulobacterales	204458|Caulobacterales	S	TamB, inner membrane protein subunit of TAM complex	-	-	-	ko:K09800	-	-	-	-	ko00000,ko02000	-	-	-	TamB
DYD3_k127_7000668_28	391600.ABRU01000009_gene3302	4.637e-38	145.0	COG0640@1|root,COG0640@2|Bacteria,1QVFX@1224|Proteobacteria,2TWEG@28211|Alphaproteobacteria,2KH4Z@204458|Caulobacterales	204458|Caulobacterales	K	Winged helix DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_34
DYD3_k127_7000668_38	573065.Astex_1543	4.596e-08	63.0	2EATF@1|root,33ZAA@2|Bacteria,1NXQ7@1224|Proteobacteria,2USTB@28211|Alphaproteobacteria,2KIYR@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7000668_31	1121019.AUMN01000019_gene3838	1.243e-26	116.0	COG3832@1|root,COG3832@2|Bacteria,2IKRU@201174|Actinobacteria	201174|Actinobacteria	S	Activator of hsp90 atpase 1 family protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_7000668_16	438753.AZC_4348	5.466e-81	280.0	COG0189@1|root,COG0189@2|Bacteria,1MVUA@1224|Proteobacteria,2TQNE@28211|Alphaproteobacteria,3EYCG@335928|Xanthobacteraceae	28211|Alphaproteobacteria	H	Prokaryotic glutathione synthetase, N-terminal domain	gshB	GO:0003674,GO:0003824,GO:0004363,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0019184,GO:0034641,GO:0042398,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901564,GO:1901566,GO:1901576	6.3.2.3	ko:K01920	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00497,R10994	RC00096,RC00141	ko00000,ko00001,ko00002,ko01000	-	-	-	GSH-S_ATP,GSH-S_N
DYD3_k127_7000668_6	1040986.ATYO01000017_gene802	7.381e-178	567.0	COG0446@1|root,COG0446@2|Bacteria,1N5MC@1224|Proteobacteria,2U28M@28211|Alphaproteobacteria,43QZ7@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Pyridine nucleotide-disulphide oxidoreductase	-	-	1.8.5.4	ko:K17218	ko00920,map00920	-	R10152	RC03155	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD3_k127_7000668_23	1082931.KKY_123	1.123e-48	190.0	2CBAE@1|root,3343U@2|Bacteria,1Q6VU@1224|Proteobacteria,2UJ1K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7000668_19	1205680.CAKO01000030_gene4837	5.479e-67	243.0	COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,2TS1B@28211|Alphaproteobacteria,2JTGR@204441|Rhodospirillales	204441|Rhodospirillales	O	Glutathione S-transferase, N-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_3
DYD3_k127_7000668_17	595536.ADVE02000001_gene5	6.08e-78	271.0	COG4122@1|root,COG4122@2|Bacteria,1R4VI@1224|Proteobacteria,2U6AD@28211|Alphaproteobacteria,36YX5@31993|Methylocystaceae	28211|Alphaproteobacteria	S	O-methyltransferase	mdmC	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_3
DYD3_k127_7000668_5	551275.KB899544_gene1081	3.585e-191	616.0	COG0433@1|root,COG0433@2|Bacteria,1MU59@1224|Proteobacteria,2TRU8@28211|Alphaproteobacteria,43WH4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF853)	yjgR	-	-	ko:K06915	-	-	-	-	ko00000	-	-	-	DUF853
DYD3_k127_7000668_13	1161401.ASJA01000002_gene2542	1.077e-91	315.0	COG0628@1|root,COG0628@2|Bacteria,1MXXU@1224|Proteobacteria,2TQJJ@28211|Alphaproteobacteria,43W60@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	AI-2E family transporter	-	-	-	-	-	-	-	-	-	-	-	-	AI-2E_transport
DYD3_k127_7000668_3	551789.ATVJ01000003_gene193	1.368e-208	668.0	COG1164@1|root,COG1164@2|Bacteria,1MXAC@1224|Proteobacteria,2TRPY@28211|Alphaproteobacteria,43ZGH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Oligopeptidase F	-	-	-	ko:K08602	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M3,Peptidase_M3_N
DYD3_k127_7000668_0	1161401.ASJA01000002_gene2539	0.0	1876.0	COG2902@1|root,COG2902@2|Bacteria,1MXNV@1224|Proteobacteria,2TS89@28211|Alphaproteobacteria,43X99@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	COG2902 NAD-specific glutamate dehydrogenase	gdhB	GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0008150,GO:0008152,GO:0016491,GO:0016638,GO:0016639,GO:0055114	1.4.1.2	ko:K15371	ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100	-	R00243	RC00006,RC02799	ko00000,ko00001,ko01000	-	-	-	Bac_GDH
DYD3_k127_7000668_20	1267535.KB906767_gene5360	7.594e-60	219.0	COG3622@1|root,COG3622@2|Bacteria,3Y6XP@57723|Acidobacteria	57723|Acidobacteria	G	Xylose isomerase-like TIM barrel	-	-	5.3.1.22	ko:K01816	ko00630,ko01100,map00630,map01100	-	R01394	RC00511	ko00000,ko00001,ko01000	-	-	-	AP_endonuc_2
DYD3_k127_7000668_4	861299.J421_0317	1.721e-203	673.0	28JZZ@1|root,2Z9PZ@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7000668_42	1173028.ANKO01000197_gene6046	0.0002385	49.0	COG2261@1|root,COG2261@2|Bacteria,1G9AW@1117|Cyanobacteria,1HCGA@1150|Oscillatoriales	1117|Cyanobacteria	S	PFAM Transglycosylase associated protein	-	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
DYD3_k127_7000668_26	1161401.ASJA01000013_gene679	2.266e-41	156.0	COG3339@1|root,COG3339@2|Bacteria,1MZR5@1224|Proteobacteria,2UCIB@28211|Alphaproteobacteria,43YH5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1232)	MA20_25305	-	-	-	-	-	-	-	-	-	-	-	DUF1232
DYD3_k127_7000668_21	314254.OA2633_09869	1.172e-59	212.0	2CX65@1|root,32T1A@2|Bacteria,1MZ48@1224|Proteobacteria,2VGPF@28211|Alphaproteobacteria,4413Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7000668_33	450851.PHZ_c1265	2.999e-25	115.0	2DQK4@1|root,337DP@2|Bacteria,1NC4R@1224|Proteobacteria,2UJ8I@28211|Alphaproteobacteria,2KJR9@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7000668_34	1123503.KB908057_gene2319	1.258e-24	115.0	COG5425@1|root,COG5425@2|Bacteria,1N08I@1224|Proteobacteria,2UBVR@28211|Alphaproteobacteria,2KH6Z@204458|Caulobacterales	204458|Caulobacterales	E	Usg-like family	-	-	-	-	-	-	-	-	-	-	-	-	Usg
DYD3_k127_7000668_41	1248917.ANFX01000013_gene1415	4.5e-06	59.0	COG5517@1|root,COG5517@2|Bacteria,1NDVD@1224|Proteobacteria,2VGRK@28211|Alphaproteobacteria,2K37V@204457|Sphingomonadales	204457|Sphingomonadales	Q	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_7000668_37	420324.KI911954_gene3756	8.747e-09	64.0	COG5517@1|root,COG5517@2|Bacteria,1R9S1@1224|Proteobacteria,2U6QU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_7000668_1	402881.Plav_1377	5.204e-222	695.0	COG0137@1|root,COG0137@2|Bacteria,1MV0Y@1224|Proteobacteria,2TTGS@28211|Alphaproteobacteria,1JNAY@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Arginosuccinate synthase	argG	GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	6.3.4.5	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	M00029,M00844,M00845	R01954	RC00380,RC00629	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Arginosuc_synth
DYD3_k127_7000668_39	272123.Anacy_2501	6.764e-08	59.0	COG1807@1|root,COG1807@2|Bacteria,1GEMY@1117|Cyanobacteria,1HS3I@1161|Nostocales	1117|Cyanobacteria	M	Alg9-like mannosyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_22
DYD3_k127_7000668_32	272123.Anacy_2501	1.209e-25	113.0	COG1807@1|root,COG1807@2|Bacteria,1GEMY@1117|Cyanobacteria,1HS3I@1161|Nostocales	1117|Cyanobacteria	M	Alg9-like mannosyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_22
DYD3_k127_7000668_2	331869.BAL199_08938	1.277e-213	675.0	COG0747@1|root,COG0747@2|Bacteria,1MUPE@1224|Proteobacteria,2TS4U@28211|Alphaproteobacteria,4BQ8P@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	transport system, periplasmic component	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
DYD3_k127_7000668_24	1347369.CCAD010000041_gene871	1.888e-46	172.0	COG1064@1|root,COG1064@2|Bacteria,1TP5B@1239|Firmicutes,4HA9Z@91061|Bacilli,1ZB8Z@1386|Bacillus	91061|Bacilli	C	alcohol dehydrogenase	-	-	1.1.1.1	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_7027940_4	1161401.ASJA01000002_gene2680	5.277e-28	119.0	2CJDM@1|root,32Z3W@2|Bacteria,1N7ZP@1224|Proteobacteria,2UF79@28211|Alphaproteobacteria,43YPZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	YMGG-like Gly-zipper	-	-	-	-	-	-	-	-	-	-	-	-	Gly-zipper_Omp,Gly-zipper_YMGG
DYD3_k127_7027940_3	1479238.JQMZ01000001_gene417	2.185e-61	216.0	COG5400@1|root,COG5400@2|Bacteria,1RB2D@1224|Proteobacteria,2VGPA@28211|Alphaproteobacteria,440T0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1134)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1134
DYD3_k127_7027940_0	1123503.KB908057_gene2458	4.995e-102	355.0	COG3920@1|root,COG3920@2|Bacteria,1MVPJ@1224|Proteobacteria,2TSSQ@28211|Alphaproteobacteria,2KG4E@204458|Caulobacterales	204458|Caulobacterales	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HisKA_2
DYD3_k127_7027940_2	1229204.AMYY01000014_gene2056	4.95e-74	255.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2TUUZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_7027940_5	1382303.JPOM01000001_gene149	3.193e-07	56.0	2DSDV@1|root,33FQ3@2|Bacteria,1NGE8@1224|Proteobacteria,2UKRI@28211|Alphaproteobacteria,2KHF0@204458|Caulobacterales	204458|Caulobacterales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7027940_1	1161401.ASJA01000008_gene1610	1.736e-98	330.0	COG0784@1|root,COG0784@2|Bacteria,1MX3Y@1224|Proteobacteria,2TT2R@28211|Alphaproteobacteria,43WD0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	response regulator	phyR	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Sigma70_r4_2
DYD3_k127_7037011_2	330084.JNYZ01000020_gene4699	3.288e-16	88.0	COG0028@1|root,COG0028@2|Bacteria,2GKGX@201174|Actinobacteria,4DZZ5@85010|Pseudonocardiales	2|Bacteria	EH	Belongs to the TPP enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_7037011_1	997346.HMPREF9374_0271	3.739e-21	103.0	COG0757@1|root,COG0757@2|Bacteria,1V6E8@1239|Firmicutes,4HJ2V@91061|Bacilli,27C0C@186824|Thermoactinomycetaceae	91061|Bacilli	E	Dehydroquinase class II	aroQ	-	4.2.1.10	ko:K03786	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03084	RC00848	ko00000,ko00001,ko00002,ko01000	-	-	-	DHquinase_II
DYD3_k127_7037011_0	1123320.KB889596_gene8775	4.964e-23	102.0	COG0251@1|root,COG0251@2|Bacteria,2IHQ7@201174|Actinobacteria	201174|Actinobacteria	J	endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_7061594_9	1122197.ATWI01000002_gene2380	7.18e-15	76.0	COG3666@1|root,COG3666@2|Bacteria,1N3QR@1224|Proteobacteria,1RR2W@1236|Gammaproteobacteria,465RW@72275|Alteromonadaceae	1236|Gammaproteobacteria	L	COG3666 Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_6,DUF772
DYD3_k127_7061594_2	394221.Mmar10_2082	9.442e-129	426.0	COG0770@1|root,COG0770@2|Bacteria,1QTSF@1224|Proteobacteria,2TR0Q@28211|Alphaproteobacteria,43WJW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein	murF	-	6.3.2.10,6.3.2.13	ko:K01928,ko:K01929,ko:K15792	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	-	R02788,R04573,R04617	RC00064,RC00090,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_7061594_0	314254.OA2633_05431	1.508e-163	527.0	COG0769@1|root,COG0769@2|Bacteria,1MU6P@1224|Proteobacteria,2TVXI@28211|Alphaproteobacteria,43WTS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan	murE	-	6.3.2.13	ko:K01928	ko00300,ko00550,map00300,map00550	-	R02788	RC00064,RC00090	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_7061594_1	1161401.ASJA01000001_gene387	5.206e-147	487.0	COG0768@1|root,COG0768@2|Bacteria,1MUNY@1224|Proteobacteria,2TSHQ@28211|Alphaproteobacteria,43WZ2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	COG0768 Cell division protein FtsI penicillin-binding protein 2	ftsI	-	3.4.16.4	ko:K03587	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011,ko03036	-	-	-	PBP_dimer,Transpeptidase
DYD3_k127_7061594_8	394221.Mmar10_2085	4.803e-19	91.0	COG5462@1|root,COG5462@2|Bacteria,1PVU6@1224|Proteobacteria,2V72C@28211|Alphaproteobacteria,43YXE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	secreted (periplasmic) protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7061594_3	1122613.ATUP01000001_gene629	5.541e-107	362.0	COG0275@1|root,COG0275@2|Bacteria,1MUT4@1224|Proteobacteria,2TRQA@28211|Alphaproteobacteria,43WD8@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	rsmH	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.199	ko:K03438	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltransf_5
DYD3_k127_7061594_6	394221.Mmar10_2087	1.515e-40	155.0	COG2001@1|root,COG2001@2|Bacteria,1RHCG@1224|Proteobacteria,2UD3W@28211|Alphaproteobacteria,43Y25@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Belongs to the MraZ family	mraZ	-	-	ko:K03925	-	-	-	-	ko00000	-	-	-	MraZ
DYD3_k127_7061594_4	1054213.HMPREF9946_03478	4.369e-85	302.0	COG3484@1|root,COG3484@2|Bacteria,1N057@1224|Proteobacteria,2U09K@28211|Alphaproteobacteria,2JRQ8@204441|Rhodospirillales	204441|Rhodospirillales	O	Proteasome-type protease	-	-	-	ko:K07395	-	-	-	-	ko00000	-	-	-	Proteasome
DYD3_k127_7061594_5	1380394.JADL01000002_gene1405	3.352e-52	195.0	COG1305@1|root,COG1305@2|Bacteria,1MVMI@1224|Proteobacteria,2TTZY@28211|Alphaproteobacteria,2JS4D@204441|Rhodospirillales	204441|Rhodospirillales	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_7061594_7	648885.KB316283_gene3417	3.465e-31	127.0	COG2307@1|root,COG2307@2|Bacteria,1MVZK@1224|Proteobacteria,2TQUM@28211|Alphaproteobacteria,1JRCN@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	A predicted alpha-helical domain with a conserved ER motif.	MA20_32425	-	-	-	-	-	-	-	-	-	-	-	Alpha-E
DYD3_k127_7061594_10	1316936.K678_03362	2.049e-09	64.0	COG3408@1|root,COG3408@2|Bacteria,1MW01@1224|Proteobacteria,2U38G@28211|Alphaproteobacteria,2JRNY@204441|Rhodospirillales	204441|Rhodospirillales	G	Glycogen debranching enzyme N terminal	-	-	-	-	-	-	-	-	-	-	-	-	GDE_C,GDE_N
DYD3_k127_7071393_1	1229204.AMYY01000021_gene675	1.259e-85	310.0	COG1281@1|root,COG1281@2|Bacteria,1MUMU@1224|Proteobacteria,2TTUR@28211|Alphaproteobacteria,4BQ76@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress	hslO	-	-	ko:K04083	-	-	-	-	ko00000,ko03110	-	-	-	HSP33
DYD3_k127_7071393_0	1122613.ATUP01000001_gene808	5.629e-163	524.0	COG4992@1|root,COG4992@2|Bacteria,1MV3C@1224|Proteobacteria,2TSGT@28211|Alphaproteobacteria,43WIK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	acetylornithine aminotransferase	argD	GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363	2.6.1.11,2.6.1.17	ko:K00821	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00028,M00845	R02283,R04475	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_7071393_3	266834.SMc00178	3.19e-27	120.0	COG3636@1|root,COG3657@1|root,COG3636@2|Bacteria,COG3657@2|Bacteria,1N75D@1224|Proteobacteria,2UGDM@28211|Alphaproteobacteria,4BFG3@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	addiction module antidote protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_7071393_2	1479238.JQMZ01000001_gene823	1.321e-74	255.0	COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,2TQSY@28211|Alphaproteobacteria,43WIB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	V	Transport permease protein	yadH	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_7095383_5	946235.CAER01000008_gene395	2.557e-47	178.0	COG4993@1|root,COG4993@2|Bacteria,1V091@1239|Firmicutes,4HCPE@91061|Bacilli	91061|Bacilli	CG	PQQ enzyme repeat	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
DYD3_k127_7095383_0	228405.HNE_0575	2.896e-154	503.0	COG2059@1|root,COG2059@2|Bacteria,1MUBW@1224|Proteobacteria,2TRXF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TIGRFAM chromate transporter, chromate ion transporter (CHR) family	chrA	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
DYD3_k127_7095383_2	582402.Hbal_3000	3.908e-67	236.0	COG3738@1|root,COG3738@2|Bacteria,1RE1M@1224|Proteobacteria,2U9JW@28211|Alphaproteobacteria,43XXQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	ko:K09974	-	-	-	-	ko00000	-	-	-	DUF1287
DYD3_k127_7095383_1	264732.Moth_1975	1.798e-74	269.0	COG1116@1|root,COG1116@2|Bacteria,1TRM6@1239|Firmicutes,248CG@186801|Clostridia,42G6K@68295|Thermoanaerobacterales	186801|Clostridia	P	PFAM ABC transporter related	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_7095383_4	589865.DaAHT2_2528	1.69e-60	218.0	COG0600@1|root,COG0600@2|Bacteria,1MWDJ@1224|Proteobacteria,43ASE@68525|delta/epsilon subdivisions,2X66K@28221|Deltaproteobacteria	28221|Deltaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_7095383_3	316067.Geob_0361	6.48e-67	240.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,42RYI@68525|delta/epsilon subdivisions,2WM7W@28221|Deltaproteobacteria	28221|Deltaproteobacteria	K	NMT1-like family	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1_2,Sigma70_r2,Sigma70_r4_2,TAT_signal
DYD3_k127_7172015_11	1209072.ALBT01000032_gene2122	4.273e-05	55.0	COG0491@1|root,COG0491@2|Bacteria,1R6GR@1224|Proteobacteria,1SHXM@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_7172015_5	1122135.KB893134_gene3531	3.383e-50	186.0	COG0625@1|root,COG0625@2|Bacteria,1RA4M@1224|Proteobacteria,2TV0I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
DYD3_k127_7172015_2	1280944.HY17_16160	4.281e-72	263.0	COG2378@1|root,COG2378@2|Bacteria,1MXS8@1224|Proteobacteria,2TT5H@28211|Alphaproteobacteria,43WKY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	MA20_18740	-	-	-	-	-	-	-	-	-	-	-	HTH_11,WYL
DYD3_k127_7172015_6	29581.BW37_04647	1.608e-49	187.0	COG2010@1|root,COG2010@2|Bacteria,1MV6D@1224|Proteobacteria,2VJ0F@28216|Betaproteobacteria,4732E@75682|Oxalobacteraceae	28216|Betaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	1.17.2.1	ko:K18030	ko00760,ko01120,map00760,map01120	M00622	R09473	RC00589	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C2,Cytochrom_C,Cytochrome_CBB3
DYD3_k127_7172015_10	649747.HMPREF0083_05599	6.805e-16	82.0	COG2315@1|root,COG2315@2|Bacteria,1VFPJ@1239|Firmicutes,4HP5X@91061|Bacilli,26Y7S@186822|Paenibacillaceae	91061|Bacilli	S	YjbR	yyaQ	-	-	-	-	-	-	-	-	-	-	-	YjbR
DYD3_k127_7172015_9	627192.SLG_25130	4.458e-20	102.0	2EVK9@1|root,33P0C@2|Bacteria,1NDYB@1224|Proteobacteria,2UQHZ@28211|Alphaproteobacteria,2K9N4@204457|Sphingomonadales	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7172015_8	314266.SKA58_07223	2.82e-21	98.0	2E3GE@1|root,32YF6@2|Bacteria,1N7MX@1224|Proteobacteria,2UFWC@28211|Alphaproteobacteria,2K8CY@204457|Sphingomonadales	204457|Sphingomonadales	S	Uncharacterized protein conserved in bacteria (DUF2188)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2188
DYD3_k127_7172015_4	314266.SKA58_07218	4.407e-63	222.0	2AP2K@1|root,31E40@2|Bacteria,1N3BH@1224|Proteobacteria,2UG7N@28211|Alphaproteobacteria,2K47E@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7172015_1	864069.MicloDRAFT_00020350	4.809e-116	383.0	COG1509@1|root,COG1509@2|Bacteria,1MUPJ@1224|Proteobacteria,2TT31@28211|Alphaproteobacteria,1JSQW@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	TIGRFAM lysine 2,3-aminomutase YodO family protein	kamA	-	5.4.3.2	ko:K01843	ko00310,map00310	-	R00461	RC00303	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Fer4_14,LAM_C,Radical_SAM
DYD3_k127_7172015_0	551789.ATVJ01000001_gene2034	1.594e-144	479.0	COG3211@1|root,COG3211@2|Bacteria,1PUZ2@1224|Proteobacteria,2V6GA@28211|Alphaproteobacteria,43X5M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF839)	-	-	-	ko:K07093	-	-	-	-	ko00000	-	-	-	DUF839
DYD3_k127_7172015_7	1121948.AUAC01000002_gene1198	1.145e-39	168.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2V7FB@28211|Alphaproteobacteria,43Y8Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0790 FOG TPR repeat, SEL1 subfamily	-	-	-	-	-	-	-	-	-	-	-	-	Sel1
DYD3_k127_7172015_3	1279038.KB907345_gene3440	1.37e-68	238.0	COG0352@1|root,COG0352@2|Bacteria,1MV42@1224|Proteobacteria,2TSSA@28211|Alphaproteobacteria,2JQJQ@204441|Rhodospirillales	204441|Rhodospirillales	H	Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)	thiE	-	2.5.1.3	ko:K00788	ko00730,ko01100,map00730,map01100	M00127	R03223,R10712	RC00224,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000	-	-	-	TMP-TENI
DYD3_k127_7197589_10	1502851.FG93_05138	1.055e-91	308.0	COG0500@1|root,COG2226@2|Bacteria,1MW7J@1224|Proteobacteria,2TSZC@28211|Alphaproteobacteria,3JSGH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dimerisation domain	crtF	-	2.1.1.210	ko:K09846	ko00906,ko01100,map00906,map01100	-	R07521,R07524,R07527,R07529,R07533,R07535	RC00003,RC02082	ko00000,ko00001,ko01000	-	-	-	Dimerisation2,Methyltransf_2
DYD3_k127_7197589_21	1122613.ATUP01000001_gene2290	1.091e-11	74.0	COG0810@1|root,COG0810@2|Bacteria,1PEDH@1224|Proteobacteria,2UEEK@28211|Alphaproteobacteria,43XZ3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Gram-negative bacterial TonB protein C-terminal	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_7197589_15	685727.REQ_44400	1.465e-56	214.0	COG2807@1|root,COG2807@2|Bacteria,2IBVK@201174|Actinobacteria	201174|Actinobacteria	P	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
DYD3_k127_7197589_11	450851.PHZ_c1924	6.867e-91	310.0	COG0655@1|root,COG0655@2|Bacteria,1N5Q7@1224|Proteobacteria,2U5RW@28211|Alphaproteobacteria,2KICW@204458|Caulobacterales	204458|Caulobacterales	S	Flavodoxin-like fold	-	-	-	-	-	-	-	-	-	-	-	-	FMN_red
DYD3_k127_7197589_1	551275.KB899546_gene1908	2.139e-167	536.0	COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,43WQ0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	P	ammonium transporter	amtB	-	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	Ammonium_transp
DYD3_k127_7197589_16	1123367.C666_09585	3.734e-46	169.0	COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2VSEZ@28216|Betaproteobacteria,2KWCQ@206389|Rhodocyclales	206389|Rhodocyclales	K	Belongs to the P(II) protein family	glnK	-	-	ko:K04752	-	-	-	-	ko00000	-	-	-	P-II
DYD3_k127_7197589_12	1280954.HPO_12453	9.322e-82	288.0	2DKUD@1|root,30C6A@2|Bacteria,1R2ZP@1224|Proteobacteria,2TZUB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Pfam:DUF2029	-	-	-	-	-	-	-	-	-	-	-	-	GT87
DYD3_k127_7197589_2	1161401.ASJA01000008_gene1707	2.164e-147	478.0	COG1972@1|root,COG1972@2|Bacteria,1MXXX@1224|Proteobacteria,2TU8A@28211|Alphaproteobacteria,43WJ9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	nucleoside transporter	-	-	-	ko:K03317	-	-	-	-	ko00000	2.A.41	-	-	Gate,Nucleos_tra2_C,Nucleos_tra2_N
DYD3_k127_7197589_13	1380391.JIAS01000012_gene4259	5.149e-60	236.0	COG1262@1|root,COG4249@1|root,COG1262@2|Bacteria,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TR94@28211|Alphaproteobacteria,2JWIY@204441|Rhodospirillales	204441|Rhodospirillales	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
DYD3_k127_7197589_18	509190.Cseg_1593	1.265e-29	124.0	COG3577@1|root,COG3577@2|Bacteria,1MZCI@1224|Proteobacteria,2U9K2@28211|Alphaproteobacteria,2KH14@204458|Caulobacterales	204458|Caulobacterales	S	gag-polyprotein putative aspartyl protease	-	-	-	ko:K06985	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	gag-asp_proteas
DYD3_k127_7197589_5	394221.Mmar10_0954	4.275e-121	396.0	COG0042@1|root,COG0042@2|Bacteria,1MUY1@1224|Proteobacteria,2TSRR@28211|Alphaproteobacteria,43X56@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs	dusA	-	-	ko:K05539	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Dus
DYD3_k127_7197589_3	1280953.HOC_01425	1.086e-145	471.0	COG0582@1|root,COG0582@2|Bacteria,1NWGS@1224|Proteobacteria,2TQWR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
DYD3_k127_7197589_9	224911.27350180	2.448e-94	323.0	COG2253@1|root,COG2253@2|Bacteria,1NJT9@1224|Proteobacteria,2U243@28211|Alphaproteobacteria,3JV53@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nucleotidyl transferase AbiEii toxin, Type IV TA system	-	-	-	-	-	-	-	-	-	-	-	-	AbiEii
DYD3_k127_7197589_19	1045855.DSC_02480	2.309e-14	81.0	COG5340@1|root,COG5340@2|Bacteria,1P6MT@1224|Proteobacteria	1224|Proteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	AbiEi_4
DYD3_k127_7197589_0	1144343.PMI41_02431	3.677e-201	634.0	COG3064@1|root,COG3064@2|Bacteria,1N4GX@1224|Proteobacteria,2TW3Q@28211|Alphaproteobacteria,43PVY@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	M	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7197589_17	158500.BV97_03160	3.034e-39	151.0	COG1813@1|root,COG1813@2|Bacteria,1QVBI@1224|Proteobacteria,2TWXC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_31
DYD3_k127_7197589_8	1320556.AVBP01000002_gene4151	2.624e-97	338.0	COG2253@1|root,COG2253@2|Bacteria	2|Bacteria	V	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	AbiEii
DYD3_k127_7197589_14	1320556.AVBP01000002_gene4150	2.194e-58	216.0	COG5340@1|root,COG5340@2|Bacteria,1R6RH@1224|Proteobacteria	1224|Proteobacteria	K	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	AbiEi_4
DYD3_k127_7197589_20	765698.Mesci_5513	2.951e-12	72.0	COG5639@1|root,COG5639@2|Bacteria,1NDG3@1224|Proteobacteria,2UFI1@28211|Alphaproteobacteria,43Q5X@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2274)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2274
DYD3_k127_7197589_4	1280952.HJA_03211	1.001e-123	424.0	COG2948@1|root,COG2948@2|Bacteria,1MU7U@1224|Proteobacteria,2TRRR@28211|Alphaproteobacteria,43XIX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Conjugal transfer protein trbI	trbI	-	-	ko:K20533	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	TrbI
DYD3_k127_7197589_6	1331060.RLDS_11665	2.081e-110	375.0	COG3504@1|root,COG3504@2|Bacteria,1MVEF@1224|Proteobacteria,2TR8Y@28211|Alphaproteobacteria,2K1EQ@204457|Sphingomonadales	204457|Sphingomonadales	U	transfer protein TrbG	trbG	-	-	ko:K20532	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	CagX
DYD3_k127_7197589_7	1280953.HOC_15072	5.457e-99	327.0	COG3701@1|root,COG3701@2|Bacteria,1MVUC@1224|Proteobacteria,2TRQ6@28211|Alphaproteobacteria,43XQZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Conjugal transfer protein TrbF	-	-	-	-	-	-	-	-	-	-	-	-	VirB8
DYD3_k127_7197589_22	1280948.HY36_16595	6.251e-10	62.0	COG3846@1|root,COG3846@2|Bacteria,1MVFD@1224|Proteobacteria,2TSHU@28211|Alphaproteobacteria,43WS3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	conjugal transfer protein TrbL	-	-	-	ko:K07344	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	TrbL
DYD3_k127_725013_1	1041146.ATZB01000042_gene1590	2.18e-133	435.0	COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,2TR7V@28211|Alphaproteobacteria,4B7JW@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Helicase	lhr	-	-	ko:K03724	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DEAD,DEAD_assoc,Helicase_C
DYD3_k127_725013_2	426117.M446_3904	1.792e-25	114.0	2C6BU@1|root,32S87@2|Bacteria,1NIFE@1224|Proteobacteria,2UIAW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_725013_0	633149.Bresu_2457	4.303e-154	496.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TV11@28211|Alphaproteobacteria,2KEYK@204458|Caulobacterales	204458|Caulobacterales	J	PFAM Amidase	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
DYD3_k127_781293_4	1161401.ASJA01000006_gene1934	1.124e-108	368.0	COG0520@1|root,COG0520@2|Bacteria,1QU0N@1224|Proteobacteria,2TW6K@28211|Alphaproteobacteria,43WBB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Aminotransferase class-V	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_5
DYD3_k127_781293_6	1200792.AKYF01000018_gene5779	2.945e-88	308.0	COG0604@1|root,COG0604@2|Bacteria,1TQ0M@1239|Firmicutes,4HA8M@91061|Bacilli,26QXS@186822|Paenibacillaceae	91061|Bacilli	C	COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N_2
DYD3_k127_781293_9	492774.JQMB01000001_gene5887	3.282e-59	211.0	COG3795@1|root,COG3795@2|Bacteria,1N5HC@1224|Proteobacteria,2UCA7@28211|Alphaproteobacteria,4BMXH@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	DoxX-like family	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_2
DYD3_k127_781293_2	190650.CC_1841	7.483e-144	488.0	COG1804@1|root,COG1804@2|Bacteria,1MW1H@1224|Proteobacteria,2TR7D@28211|Alphaproteobacteria,2KFRK@204458|Caulobacterales	204458|Caulobacterales	C	PFAM L-carnitine dehydratase bile acid-inducible protein F	-	-	5.1.99.4	ko:K01796	ko00120,ko01100,ko04146,map00120,map01100,map04146	M00104	R08734,R08739	RC02345	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_transf_3
DYD3_k127_781293_0	1123020.AUIE01000005_gene4257	2.056e-155	511.0	COG0318@1|root,COG0318@2|Bacteria,1MWSD@1224|Proteobacteria,1RQ1C@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	6.2.1.48	ko:K02182	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_781293_3	1247963.JPHU01000012_gene933	1.941e-120	402.0	COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,2U0A3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	Beta-lactamase class C and other penicillin binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_781293_10	670307.HYPDE_35028	4.059e-30	122.0	COG3668@1|root,COG3668@2|Bacteria,1NHYK@1224|Proteobacteria,2UK0V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	ko:K07746,ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_781293_11	316055.RPE_1421	1.069e-21	97.0	COG3609@1|root,COG3609@2|Bacteria,1NAEV@1224|Proteobacteria,2UHUP@28211|Alphaproteobacteria,3K4HC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_781293_1	450851.PHZ_c0409	1.343e-145	466.0	COG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,2TR9Q@28211|Alphaproteobacteria,2KFUM@204458|Caulobacterales	204458|Caulobacterales	K	RNA polymerase sigma factor RpoH	rpoH	-	-	ko:K03089	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r1_2,Sigma70_r2,Sigma70_r4
DYD3_k127_781293_5	1030157.AFMP01000011_gene3799	2.822e-107	367.0	COG2244@1|root,COG2244@2|Bacteria,1R9I0@1224|Proteobacteria,2U3NB@28211|Alphaproteobacteria,2K0X3@204457|Sphingomonadales	204457|Sphingomonadales	S	Membrane protein involved in the export of O-antigen and teichoic acid	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt_3,Polysacc_synt_C
DYD3_k127_781293_7	1161401.ASJA01000006_gene1964	6.504e-84	290.0	COG2321@1|root,COG2321@2|Bacteria,1MU4U@1224|Proteobacteria,2TRCS@28211|Alphaproteobacteria,43XMY@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	metalloprotease	-	-	-	ko:K07054	-	-	-	-	ko00000	-	-	-	Zn_peptidase
DYD3_k127_781293_13	243233.MCA2608	0.0005122	52.0	COG3264@1|root,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,1RQW8@1236|Gammaproteobacteria,1XGZI@135618|Methylococcales	135618|Methylococcales	M	Protein of unknown function (DUF3772)	-	-	-	ko:K05802	-	-	-	-	ko00000,ko02000	1.A.23.1.1	-	-	DUF3772,MS_channel
DYD3_k127_788917_0	517418.Ctha_1226	1.141e-35	145.0	COG3204@1|root,COG3204@2|Bacteria,1FEUK@1090|Chlorobi	1090|Chlorobi	S	SdiA-regulated	-	-	-	-	-	-	-	-	-	-	-	-	SdiA-regulated
DYD3_k127_788917_1	118161.KB235922_gene3936	3.058e-32	136.0	2C4HM@1|root,2ZFRV@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_790854_2	1247963.JPHU01000001_gene1846	1.287e-25	110.0	COG0046@1|root,COG0271@1|root,COG0046@2|Bacteria,COG0271@2|Bacteria,1MYN4@1224|Proteobacteria,2TRGM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purL	-	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_790854_0	190650.CC_2500	2.895e-319	994.0	COG0046@1|root,COG0046@2|Bacteria,1MYN4@1224|Proteobacteria,2TRGM@28211|Alphaproteobacteria,2KFW0@204458|Caulobacterales	204458|Caulobacterales	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purL	-	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_790854_1	1161401.ASJA01000033_gene3050	1.542e-47	172.0	COG0047@1|root,COG0047@2|Bacteria,1MU4Y@1224|Proteobacteria,2TS67@28211|Alphaproteobacteria,43WZQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase_5
DYD3_k127_860665_2	1479238.JQMZ01000001_gene2336	1.608e-162	518.0	COG2255@1|root,COG2255@2|Bacteria,1MU38@1224|Proteobacteria,2TQNG@28211|Alphaproteobacteria,43W79@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing	ruvB	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03551	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvB_C,RuvB_N
DYD3_k127_860665_3	420662.Mpe_A3329	7.425e-140	475.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria	1224|Proteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF
DYD3_k127_860665_1	1161401.ASJA01000006_gene1906	1.123e-171	551.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TRYI@28211|Alphaproteobacteria,43WXB@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	COG0277 FAD FMN-containing dehydrogenases	-	-	-	-	-	-	-	-	-	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_860665_6	1161401.ASJA01000003_gene2959	5.528e-90	314.0	COG0009@1|root,COG0009@2|Bacteria,1MVPM@1224|Proteobacteria,2TRIM@28211|Alphaproteobacteria,43X5B@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine	sua5	GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363	2.7.7.87	ko:K07566	-	-	R10463	RC00745	ko00000,ko01000,ko03009,ko03016	-	-	-	SUA5,Sua5_yciO_yrdC
DYD3_k127_860665_7	1280954.HPO_06963	3.608e-89	309.0	COG2353@1|root,COG3038@1|root,COG2353@2|Bacteria,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2UBYU@28211|Alphaproteobacteria,43X7K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Belongs to the UPF0312 family	-	-	-	ko:K12262	-	-	-	-	ko00000	-	-	-	Ni_hydr_CYTB,YceI
DYD3_k127_860665_10	582402.Hbal_1167	2.357e-39	154.0	COG2353@1|root,COG2353@2|Bacteria,1R9XD@1224|Proteobacteria,2TVD3@28211|Alphaproteobacteria,440Q5@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0312 family	-	-	-	-	-	-	-	-	-	-	-	-	YceI
DYD3_k127_860665_9	394221.Mmar10_0834	1.35e-48	181.0	COG2353@1|root,COG2353@2|Bacteria,1R9XD@1224|Proteobacteria,2TVD3@28211|Alphaproteobacteria,43YBR@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0312 family	-	-	-	-	-	-	-	-	-	-	-	-	YceI
DYD3_k127_860665_0	1123503.KB908058_gene828	1.43e-205	668.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQJS@28211|Alphaproteobacteria,2KFI7@204458|Caulobacterales	204458|Caulobacterales	I	acyl-CoA dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N
DYD3_k127_860665_5	94624.Bpet1117	1.016e-96	328.0	COG0491@1|root,COG0491@2|Bacteria,1MUXF@1224|Proteobacteria,2VKJX@28216|Betaproteobacteria,3T31I@506|Alcaligenaceae	28216|Betaproteobacteria	S	Zn-dependent hydrolases including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_860665_8	314254.OA2633_14461	7.388e-74	259.0	COG0681@1|root,COG0681@2|Bacteria,1MXUF@1224|Proteobacteria,2TR9N@28211|Alphaproteobacteria,43WDD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	U	Belongs to the peptidase S26 family	lepB	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24
DYD3_k127_860665_4	1479238.JQMZ01000001_gene1410	2.632e-126	411.0	COG1028@1|root,COG1028@2|Bacteria,1MUSQ@1224|Proteobacteria,2TTJC@28211|Alphaproteobacteria,43WCC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	ko:K13775	ko00281,map00281	-	R08087,R08096,R10125,R10126	RC00080,RC00087	ko00000,ko00001	-	-	-	adh_short,adh_short_C2
DYD3_k127_860665_11	1479238.JQMZ01000001_gene1586	3.856e-36	144.0	COG2940@1|root,COG2940@2|Bacteria,1N3VM@1224|Proteobacteria,2UDY0@28211|Alphaproteobacteria,43YPC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	-	-	-	ko:K07117	-	-	-	-	ko00000	-	-	-	SET
DYD3_k127_873464_12	1354722.JQLS01000008_gene2758	4.266e-13	70.0	COG3293@1|root,COG3293@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2
DYD3_k127_873464_14	1296990.H845_758	2.007e-07	55.0	COG3293@1|root,COG3293@2|Bacteria,1REEB@1224|Proteobacteria,2U74J@28211|Alphaproteobacteria,2JYDD@204441|Rhodospirillales	204441|Rhodospirillales	L	Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_2
DYD3_k127_873464_5	1320556.AVBP01000001_gene4782	2.518e-79	280.0	COG0789@1|root,COG0789@2|Bacteria,1REB7@1224|Proteobacteria,2U7WY@28211|Alphaproteobacteria,43MX9@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	TipAS antibiotic-recognition domain	-	-	-	-	-	-	-	-	-	-	-	-	MerR_1,TipAS
DYD3_k127_873464_13	1206741.BAFX01000083_gene6298	1.79e-11	68.0	COG0346@1|root,COG0346@2|Bacteria,2I8FW@201174|Actinobacteria,4G1J6@85025|Nocardiaceae	201174|Actinobacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_873464_0	1122613.ATUP01000001_gene1917	0.0	1285.0	COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,2TRKI@28211|Alphaproteobacteria,43WEC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD3_k127_873464_11	450851.PHZ_c0826	3.683e-22	104.0	COG5373@1|root,COG5373@2|Bacteria,1N7JV@1224|Proteobacteria,2TR7A@28211|Alphaproteobacteria,2KGUA@204458|Caulobacterales	204458|Caulobacterales	L	Domain of unknown function (DUF4167)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4167
DYD3_k127_873464_6	59538.XP_005973668.1	2.587e-73	257.0	COG2890@1|root,KOG2904@2759|Eukaryota,38S3X@33154|Opisthokonta,3BH12@33208|Metazoa,3D4HC@33213|Bilateria	33208|Metazoa	J	protein methyltransferase activity	-	-	2.1.1.297	ko:K02493	-	-	R10806	RC00003,RC03279	ko00000,ko01000,ko03012	-	-	-	MTS,Methyltransf_31
DYD3_k127_873464_8	450851.PHZ_c2886	2.564e-53	190.0	COG1959@1|root,COG1959@2|Bacteria,1RDA4@1224|Proteobacteria,2U9GW@28211|Alphaproteobacteria,2KGZC@204458|Caulobacterales	204458|Caulobacterales	K	Rrf2 family	-	-	-	-	-	-	-	-	-	-	-	-	Rrf2
DYD3_k127_873464_4	1121123.AUAO01000001_gene909	1.269e-100	334.0	COG0730@1|root,COG0730@2|Bacteria,1PGTZ@1224|Proteobacteria,2U5IZ@28211|Alphaproteobacteria,2KHJX@204458|Caulobacterales	204458|Caulobacterales	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
DYD3_k127_873464_3	1479238.JQMZ01000001_gene2424	2.929e-149	493.0	COG0216@1|root,COG0216@2|Bacteria,1MV28@1224|Proteobacteria,2TQSV@28211|Alphaproteobacteria,43WXX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA	prfA	-	-	ko:K02835	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD3_k127_873464_9	1385935.N836_28270	4.198e-38	154.0	2F320@1|root,33VX3@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_873464_2	717785.HYPMC_4861	4.174e-184	599.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3N88K@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	exaA	-	1.1.2.8,1.1.5.5,1.1.9.1	ko:K00114,ko:K17760,ko:K22473	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285,R09479	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_873464_1	1038858.AXBA01000013_gene2359	3.669e-231	728.0	COG1620@1|root,COG1620@2|Bacteria,1MV13@1224|Proteobacteria,2TQY1@28211|Alphaproteobacteria,3F0NG@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	TIGRFAM L-lactate transport	glcA	-	-	ko:K03303	-	-	-	-	ko00000,ko02000	2.A.14	-	-	Lactate_perm
DYD3_k127_873464_7	1042326.AZNV01000074_gene2301	5.107e-63	226.0	2AAKD@1|root,30ZXW@2|Bacteria,1PMXB@1224|Proteobacteria,2V0HW@28211|Alphaproteobacteria,4BGP9@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_873464_10	1280952.HJA_07762	1.374e-33	132.0	COG1331@1|root,COG1331@2|Bacteria,1NFE0@1224|Proteobacteria,2V8MZ@28211|Alphaproteobacteria,43ZXU@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Protein of unknown function, DUF255	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_7
DYD3_k127_878424_0	1123503.KB908058_gene797	0.0	1294.0	COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2TR3C@28211|Alphaproteobacteria,2KF8E@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the PEP-utilizing enzyme family	ppdK	-	2.7.9.1	ko:K01006	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200	M00169,M00171,M00172,M00173	R00206	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PEP-utilizers_C,PPDK_N
DYD3_k127_878424_3	1161401.ASJA01000017_gene1254	2.634e-51	194.0	COG3773@1|root,COG3773@2|Bacteria,1MWX3@1224|Proteobacteria,2TT15@28211|Alphaproteobacteria,440Q7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Cell Wall Hydrolase	sleB	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_2
DYD3_k127_878424_2	1110502.TMO_1903	1.919e-85	294.0	COG0157@1|root,COG0157@2|Bacteria,1MW0C@1224|Proteobacteria,2TS7C@28211|Alphaproteobacteria,2JPCM@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the NadC ModD family	nadC	-	2.4.2.19	ko:K00767	ko00760,ko01100,map00760,map01100	M00115	R03348	RC02877	ko00000,ko00001,ko00002,ko01000	-	-	-	QRPTase_C,QRPTase_N
DYD3_k127_878424_1	1161401.ASJA01000017_gene1252	6.826e-157	510.0	COG0029@1|root,COG0029@2|Bacteria,1RBQW@1224|Proteobacteria,2TS0E@28211|Alphaproteobacteria,43WAE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	L-aspartate oxidase	nadB	-	1.4.3.16	ko:K00278	ko00250,ko00760,ko01100,map00250,map00760,map01100	M00115	R00357,R00481	RC00006,RC02566	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_2,Succ_DH_flav_C
DYD3_k127_878424_4	1280950.HJO_13306	1.683e-16	87.0	2AFF9@1|root,315FA@2|Bacteria,1PVI1@1224|Proteobacteria,2V6WX@28211|Alphaproteobacteria,43YG1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_907305_0	395964.KE386496_gene1307	5.539e-127	412.0	COG1305@1|root,COG1305@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,3NBDA@45404|Beijerinckiaceae	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_907305_1	69395.JQLZ01000003_gene241	4.636e-116	381.0	COG3677@1|root,COG3677@2|Bacteria,1MXYX@1224|Proteobacteria,2TQR3@28211|Alphaproteobacteria,2KHRA@204458|Caulobacterales	204458|Caulobacterales	L	ISXO2-like transposase domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS1595,Zn_Tnp_IS1595
DYD3_k127_907305_5	1161401.ASJA01000015_gene985	1.351e-35	154.0	28JTG@1|root,2Z9IR@2|Bacteria,1R0GC@1224|Proteobacteria,2TWC3@28211|Alphaproteobacteria,43XUK@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2793)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2793
DYD3_k127_907305_2	1300345.LF41_1328	6.483e-68	256.0	COG4782@1|root,COG4782@2|Bacteria,1MVAD@1224|Proteobacteria,1TJ90@1236|Gammaproteobacteria,1X98N@135614|Xanthomonadales	135614|Xanthomonadales	S	Alpha/beta hydrolase of unknown function (DUF900)	-	-	-	-	-	-	-	-	-	-	-	-	DUF900
DYD3_k127_907305_6	999611.KI421506_gene4019	1.047e-19	104.0	COG4249@1|root,COG4249@2|Bacteria,1R3WZ@1224|Proteobacteria,2TUBK@28211|Alphaproteobacteria,281Y3@191028|Leisingera	28211|Alphaproteobacteria	S	Caspase domain	MA20_02090	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
DYD3_k127_907519_4	1161401.ASJA01000018_gene1189	2.874e-15	87.0	COG3087@1|root,COG3087@2|Bacteria,1Q2NJ@1224|Proteobacteria,2V9XS@28211|Alphaproteobacteria,43XYQ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Sporulation related domain	-	-	-	-	-	-	-	-	-	-	-	-	SPOR
DYD3_k127_907519_1	394221.Mmar10_1914	8.253e-165	527.0	COG0232@1|root,COG0232@2|Bacteria,1MVQ2@1224|Proteobacteria,2TRCD@28211|Alphaproteobacteria,43X01@69657|Hyphomonadaceae	28211|Alphaproteobacteria	F	Belongs to the dGTPase family. Type 2 subfamily	dgt	GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576	3.1.5.1	ko:K01129	ko00230,map00230	-	R01856	RC00017	ko00000,ko00001,ko01000	-	-	-	HD,HD_assoc
DYD3_k127_907519_2	1280954.HPO_12578	9.575e-41	153.0	COG0316@1|root,COG0316@2|Bacteria,1RHCW@1224|Proteobacteria,2UBR8@28211|Alphaproteobacteria,43XUS@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Belongs to the HesB IscA family	erpA	-	-	ko:K13628,ko:K15724	-	-	-	-	ko00000,ko03016	-	-	-	Fe-S_biosyn
DYD3_k127_907519_3	313624.NSP_31080	3.017e-30	124.0	COG4374@1|root,COG4374@2|Bacteria,1G8PQ@1117|Cyanobacteria,1HPVX@1161|Nostocales	1117|Cyanobacteria	S	PFAM PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_907519_5	1449080.JQMV01000003_gene2127	3.963e-11	70.0	COG2002@1|root,COG2002@2|Bacteria,1WKM3@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	K	Antidote-toxin recognition MazE, bacterial antitoxin	-	-	-	-	-	-	-	-	-	-	-	-	MazE_antitoxin
DYD3_k127_907519_0	1161401.ASJA01000001_gene520	5.137e-191	602.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TREJ@28211|Alphaproteobacteria,43W6X@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA	ivd	-	1.3.8.4	ko:K00253	ko00280,ko01100,map00280,map01100	M00036	R04095	RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_919745_25	1411123.JQNH01000001_gene1167	2.419e-05	46.0	COG3293@1|root,COG3293@2|Bacteria,1P5HD@1224|Proteobacteria,2TUQI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Transposase and inactivated	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2,DUF4096
DYD3_k127_919745_17	1449076.JOOE01000002_gene1169	6.107e-42	165.0	COG1073@1|root,COG1073@2|Bacteria,1N319@1224|Proteobacteria,2VD42@28211|Alphaproteobacteria,2K432@204457|Sphingomonadales	204457|Sphingomonadales	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_919745_22	555793.WSK_1442	2.38e-15	91.0	28NHI@1|root,2ZBJA@2|Bacteria,1RCPZ@1224|Proteobacteria,2UKQP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_919745_26	1082931.KKY_144	6.673e-05	56.0	2C42J@1|root,336T0@2|Bacteria,1NFNW@1224|Proteobacteria,2UHWX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_919745_0	392499.Swit_3271	1.834e-253	794.0	COG0129@1|root,COG0129@2|Bacteria,1MUTQ@1224|Proteobacteria,2TRTQ@28211|Alphaproteobacteria,2K026@204457|Sphingomonadales	204457|Sphingomonadales	EG	Belongs to the IlvD Edd family	ilvD	-	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
DYD3_k127_919745_11	395495.Lcho_1121	1.285e-66	241.0	COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2VIVP@28216|Betaproteobacteria,1KJPA@119065|unclassified Burkholderiales	28216|Betaproteobacteria	C	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_919745_3	394221.Mmar10_1070	2.395e-159	522.0	COG1174@1|root,COG1732@1|root,COG1174@2|Bacteria,COG1732@2|Bacteria,1MXA1@1224|Proteobacteria,2TUNH@28211|Alphaproteobacteria,43WPP@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EM	Substrate binding domain of ABC-type glycine betaine transport system	MA20_02380	-	-	ko:K05845,ko:K05846	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1,OpuAC
DYD3_k127_919745_7	1254432.SCE1572_44215	9.223e-82	279.0	COG1125@1|root,COG1125@2|Bacteria,1QTUC@1224|Proteobacteria,42MXW@68525|delta/epsilon subdivisions,2WK94@28221|Deltaproteobacteria,2YWE8@29|Myxococcales	28221|Deltaproteobacteria	E	ABC transporter	-	-	-	ko:K05847	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	ABC_tran,CBS
DYD3_k127_919745_19	394221.Mmar10_1068	7.153e-21	94.0	2E4B6@1|root,32Z6W@2|Bacteria,1N7QS@1224|Proteobacteria,2UFNH@28211|Alphaproteobacteria,43YF9@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3126)	MA20_32250	-	-	-	-	-	-	-	-	-	-	-	DUF3126
DYD3_k127_919745_5	314254.OA2633_15145	7.656e-104	345.0	COG1045@1|root,COG1045@2|Bacteria,1MVFX@1224|Proteobacteria,2TQQ5@28211|Alphaproteobacteria,43WQ3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	serine acetyltransferase	cysE	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009314,GO:0009333,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234	2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,SATase_N
DYD3_k127_919745_13	394221.Mmar10_1062	1.184e-55	202.0	COG1309@1|root,COG1309@2|Bacteria,1N6R3@1224|Proteobacteria,2U76N@28211|Alphaproteobacteria,43XXD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	COG1309 Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
DYD3_k127_919745_14	935557.ATYB01000014_gene2437	6.166e-55	202.0	COG0778@1|root,COG0778@2|Bacteria,1PKUV@1224|Proteobacteria,2U5MZ@28211|Alphaproteobacteria,4B8TM@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	nitroreductase	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
DYD3_k127_919745_9	570967.JMLV01000001_gene2594	1.597e-71	244.0	COG0780@1|root,COG0780@2|Bacteria,1MW0M@1224|Proteobacteria,2U57X@28211|Alphaproteobacteria,2JRW3@204441|Rhodospirillales	204441|Rhodospirillales	S	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)	queF	-	1.7.1.13	ko:K09457	ko00790,ko01100,map00790,map01100	-	R07605	RC01875	ko00000,ko00001,ko01000,ko03016	-	-	-	QueF
DYD3_k127_919745_20	702113.PP1Y_AT23096	1.426e-18	95.0	COG0664@1|root,COG0664@2|Bacteria,1PIN3@1224|Proteobacteria,2TSFE@28211|Alphaproteobacteria,2KCW2@204457|Sphingomonadales	204457|Sphingomonadales	T	helix_turn_helix, cAMP Regulatory protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_919745_2	1280953.HOC_15347	2.098e-163	522.0	COG0082@1|root,COG0082@2|Bacteria,1MU98@1224|Proteobacteria,2TQY2@28211|Alphaproteobacteria,43WI3@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system	aroC	GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	4.2.3.5	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R01714	RC00586	ko00000,ko00001,ko00002,ko01000	-	-	-	Chorismate_synt
DYD3_k127_919745_24	1333998.M2A_2626	1.841e-05	53.0	2BZSP@1|root,331XA@2|Bacteria,1R6PZ@1224|Proteobacteria,2TSEG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_919745_18	390989.JOEG01000012_gene3446	1.872e-37	146.0	COG0454@1|root,COG0456@2|Bacteria,2IFM6@201174|Actinobacteria,4DD4K@85008|Micromonosporales	201174|Actinobacteria	K	Gcn5-related n-acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Condensation
DYD3_k127_919745_6	1007104.SUS17_2461	8.467e-84	294.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2TR47@28211|Alphaproteobacteria,2K0QG@204457|Sphingomonadales	204457|Sphingomonadales	G	glucose sorbosone	-	-	-	-	-	-	-	-	-	-	-	-	GSDH
DYD3_k127_919745_10	420324.KI911965_gene482	4.926e-71	250.0	COG4711@1|root,COG4711@2|Bacteria,1R9Y5@1224|Proteobacteria,2U58R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF2391
DYD3_k127_919745_21	240016.ABIZ01000001_gene103	1.569e-18	91.0	COG1572@1|root,COG1572@2|Bacteria	2|Bacteria	NU	bacterial-type flagellum-dependent cell motility	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_919745_1	1379270.AUXF01000002_gene1148	1.372e-198	644.0	COG4993@1|root,COG4993@2|Bacteria,1ZSSJ@142182|Gemmatimonadetes	2|Bacteria	G	PQQ-like domain	-	-	1.1.5.2	ko:K00117	ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130	-	R06620	RC00066	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
DYD3_k127_919745_16	1121949.AQXT01000002_gene1863	1.929e-44	168.0	COG0671@1|root,COG0671@2|Bacteria,1NBH3@1224|Proteobacteria,2UICF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	PAP2 superfamily	-	-	-	-	-	-	-	-	-	-	-	-	PAP2
DYD3_k127_919745_15	1218076.BAYB01000027_gene4480	4.391e-49	189.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2VMPC@28216|Betaproteobacteria,1K5RV@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	FAA_hydrolase
DYD3_k127_919745_4	1122604.JONR01000018_gene1121	1.168e-105	348.0	COG0607@1|root,COG0664@1|root,COG0607@2|Bacteria,COG0664@2|Bacteria,1R9Q1@1224|Proteobacteria,1RSKD@1236|Gammaproteobacteria,1X71M@135614|Xanthomonadales	135614|Xanthomonadales	PT	Cyclic nucleotide-monophosphate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Rhodanese,cNMP_binding
DYD3_k127_919745_12	1123256.KB907927_gene1603	4.79e-61	223.0	COG1734@1|root,COG1734@2|Bacteria,1RD08@1224|Proteobacteria,1S47H@1236|Gammaproteobacteria,1XCJH@135614|Xanthomonadales	135614|Xanthomonadales	T	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression	dksA	-	-	ko:K06204	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000,ko03009,ko03021	-	-	-	zf-dskA_traR
DYD3_k127_919745_8	1123257.AUFV01000002_gene2639	1.292e-78	266.0	COG0603@1|root,COG0603@2|Bacteria,1MU5V@1224|Proteobacteria,1RMG9@1236|Gammaproteobacteria,1X3TT@135614|Xanthomonadales	135614|Xanthomonadales	F	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	queC	-	6.3.4.20	ko:K06920	ko00790,ko01100,map00790,map01100	-	R09978	RC00959	ko00000,ko00001,ko01000,ko03016	-	-	-	QueC
DYD3_k127_921994_3	1280954.HPO_12473	4.848e-64	231.0	2E53X@1|root,32ZWX@2|Bacteria,1NJTX@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_921994_0	386415.NT01CX_1554	1.149e-125	419.0	COG1696@1|root,COG1696@2|Bacteria,1TP52@1239|Firmicutes,248V4@186801|Clostridia,36DV2@31979|Clostridiaceae	186801|Clostridia	M	membrane protein involved in D-alanine export	-	-	-	-	-	-	-	-	-	-	-	-	MBOAT
DYD3_k127_921994_4	1114970.PSF113_2069	1.323e-50	203.0	COG2303@1|root,COG2303@2|Bacteria,1PICJ@1224|Proteobacteria,1RV5E@1236|Gammaproteobacteria,1YTFY@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	C	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_921994_6	882083.SacmaDRAFT_3584	2.477e-24	113.0	COG0702@1|root,COG0702@2|Bacteria,2IQ0Z@201174|Actinobacteria	201174|Actinobacteria	GM	NmrA-like family	-	-	1.6.5.3,1.6.99.3	ko:K00329,ko:K00356	ko00190,map00190	-	R11945	RC00061	ko00000,ko00001,ko01000	-	-	-	Methyltransf_21,NAD_binding_10
DYD3_k127_921994_1	596153.Alide_1984	3.918e-113	375.0	COG0463@1|root,COG0463@2|Bacteria,1MWE5@1224|Proteobacteria,2VIY2@28216|Betaproteobacteria,4AB91@80864|Comamonadaceae	28216|Betaproteobacteria	M	glycosyl transferase family 2	-	-	-	ko:K20534	-	-	-	-	ko00000,ko01000,ko01005,ko02000	4.D.2.1.9	GT2	-	Glycos_transf_2
DYD3_k127_921994_2	1280944.HY17_17270	1.537e-68	250.0	2BB2J@1|root,324IQ@2|Bacteria	2|Bacteria	S	Glycosyltransferase family 87	-	-	-	-	-	-	-	-	-	-	-	-	GT87
DYD3_k127_921994_5	593750.Metfor_0430	3.358e-30	130.0	COG1004@1|root,arCOG00253@2157|Archaea,2XTQY@28890|Euryarchaeota,2N99M@224756|Methanomicrobia	224756|Methanomicrobia	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	ugd	-	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	iAF692.Mbar_A1119,iAF692.Mbar_A1120	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_95972_1	485913.Krac_6352	3.415e-59	233.0	COG0402@1|root,COG0402@2|Bacteria,2G6DG@200795|Chloroflexi	200795|Chloroflexi	F	Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine	mtaD	-	3.5.4.28,3.5.4.31	ko:K12960	ko00270,ko01100,map00270,map01100	-	R09660	RC00477	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,CYTH
DYD3_k127_95972_0	1333998.M2A_1353	4.822e-233	728.0	COG0114@1|root,COG0114@2|Bacteria,1MUQI@1224|Proteobacteria,2TQM7@28211|Alphaproteobacteria,4BP5W@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate	fumC	GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	4.2.1.2	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	M00009,M00011,M00173,M00376	R01082	RC00443	ko00000,ko00001,ko00002,ko01000	-	-	-	FumaraseC_C,Lyase_1
DYD3_k127_95972_4	1112214.AHIS01000009_gene194	4e-05	56.0	2EFUM@1|root,339KS@2|Bacteria,1NGG6@1224|Proteobacteria,2UJA7@28211|Alphaproteobacteria,2K7RI@204457|Sphingomonadales	204457|Sphingomonadales	S	Domain of unknown function (DUF4169)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4169
DYD3_k127_95972_2	1161401.ASJA01000001_gene427	2.471e-14	77.0	COG4321@1|root,COG4321@2|Bacteria,1Q7P3@1224|Proteobacteria,2V72Z@28211|Alphaproteobacteria,43YZ4@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Ribbon-helix-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	RHH_4
DYD3_k127_95972_3	172088.AUGA01000080_gene5353	1.857e-05	47.0	COG3335@1|root,COG3335@2|Bacteria,1MZ39@1224|Proteobacteria,2UCFH@28211|Alphaproteobacteria,3K69M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
DYD3_k127_961664_1	1121948.AUAC01000007_gene407	1.226e-90	308.0	COG0128@1|root,COG0128@2|Bacteria,1MWMK@1224|Proteobacteria,2TR6W@28211|Alphaproteobacteria,43W5R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	aroA	GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576	2.5.1.19	ko:K00800	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03460	RC00350	ko00000,ko00001,ko00002,ko01000	-	-	-	EPSP_synthase
DYD3_k127_961664_2	1333998.M2A_2827	1.857e-57	207.0	COG0283@1|root,COG0283@2|Bacteria,1MUUD@1224|Proteobacteria,2U71H@28211|Alphaproteobacteria,4BQBA@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Cytidylate kinase	cmk	GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	2.7.4.25	ko:K00945	ko00240,ko01100,map00240,map01100	M00052	R00158,R00512,R01665	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Cytidylate_kin
DYD3_k127_961664_0	1161401.ASJA01000002_gene2587	2.154e-283	881.0	COG0539@1|root,COG0539@2|Bacteria,1MVAV@1224|Proteobacteria,2TQPV@28211|Alphaproteobacteria,43W6M@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Ribosomal protein S1	rpsA	-	-	ko:K02945	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	S1
DYD3_k127_961664_4	394221.Mmar10_0097	9.087e-34	134.0	COG0776@1|root,COG0776@2|Bacteria,1MZ7M@1224|Proteobacteria,2UBR5@28211|Alphaproteobacteria,43Y76@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	himD	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141	-	ko:K05788	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_961664_3	945713.IALB_1077	2.187e-44	165.0	COG1970@1|root,COG1970@2|Bacteria	2|Bacteria	M	mechanosensitive ion channel activity	mscL	GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066	-	ko:K03282	-	-	-	-	ko00000,ko02000	1.A.22.1	-	-	MscL
DYD3_k127_965471_5	316279.Syncc9902_1775	0.0002456	48.0	COG3118@1|root,COG3118@2|Bacteria,1G7YS@1117|Cyanobacteria,1H0SX@1129|Synechococcus	1117|Cyanobacteria	O	Belongs to the thioredoxin family	-	GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748	-	ko:K03671	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	Thioredoxin
DYD3_k127_965471_3	477228.YO5_09210	4.181e-16	92.0	COG5496@1|root,COG5496@2|Bacteria,1RKFT@1224|Proteobacteria,1TA24@1236|Gammaproteobacteria,1Z44V@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	S	Thioesterase	-	-	3.1.2.29	ko:K18700	-	-	-	-	ko00000,ko01000	-	-	-	-
DYD3_k127_965471_4	1294143.H681_18370	8.595e-12	78.0	COG1309@1|root,COG1309@2|Bacteria,1MZ9E@1224|Proteobacteria,1S7E9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional regulator	-	-	-	ko:K18301	-	M00642	-	-	ko00000,ko00002,ko01504,ko03000	-	-	-	TetR_C_7,TetR_N
DYD3_k127_965471_1	1028801.RG1141_PA05850	5.027e-71	263.0	COG3618@1|root,COG3618@2|Bacteria,1R5V9@1224|Proteobacteria,2TU5F@28211|Alphaproteobacteria,4BBW5@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
DYD3_k127_965471_0	1028801.RG1141_CH43620	2.513e-76	272.0	COG3181@1|root,COG3181@2|Bacteria,1NBZ9@1224|Proteobacteria,2TR2A@28211|Alphaproteobacteria,4B7YX@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
DYD3_k127_965471_2	1054213.HMPREF9946_00853	7.631e-36	139.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,2JPTU@204441|Rhodospirillales	204441|Rhodospirillales	S	Tripartite tricarboxylate transporter TctA family	-	-	-	-	-	-	-	-	-	-	-	-	TctA
DYD3_k127_987507_1	1479238.JQMZ01000001_gene884	4.306e-112	376.0	COG1195@1|root,COG1195@2|Bacteria,1MX8N@1224|Proteobacteria,2TQRD@28211|Alphaproteobacteria,43WJX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP	recF	-	-	ko:K03629	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	AAA_21,AAA_23,SMC_N
DYD3_k127_987507_0	1161401.ASJA01000002_gene2548	2.705e-153	495.0	COG0592@1|root,COG0592@2|Bacteria,1MVD9@1224|Proteobacteria,2TSRZ@28211|Alphaproteobacteria,43WF2@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	dnaN	-	2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3
DYD3_k127_987507_2	1161401.ASJA01000002_gene2547	6.481e-71	256.0	COG0593@1|root,COG0593@2|Bacteria,1MU5H@1224|Proteobacteria,2TT03@28211|Alphaproteobacteria,43WSG@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	dnaA	GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837	-	ko:K02313	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001,ko03032,ko03036	-	-	-	Bac_DnaA,Bac_DnaA_C,DnaA_N
DYD3_k127_999662_10	1161401.ASJA01000013_gene724	1.306e-42	158.0	COG3288@1|root,COG3288@2|Bacteria,1MZ3E@1224|Proteobacteria,2UBXS@28211|Alphaproteobacteria,43Y9Z@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	NADP transhydrogenase	pntAB	GO:0008150,GO:0008152,GO:0055114	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	PNTB_4TM
DYD3_k127_999662_5	1229204.AMYY01000021_gene650	3.137e-138	452.0	COG3288@1|root,COG3288@2|Bacteria,1MVXU@1224|Proteobacteria,2TSZN@28211|Alphaproteobacteria,4BPHX@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	NAD(P) transhydrogenase, alpha subunit	pntAA	GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
DYD3_k127_999662_15	394221.Mmar10_2546	2.615e-16	82.0	2AKP2@1|root,31BFP@2|Bacteria,1Q7AE@1224|Proteobacteria,2V70P@28211|Alphaproteobacteria,43YTJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Bacterial aa3 type cytochrome c oxidase subunit IV	-	-	-	-	-	-	-	-	-	-	-	-	COX4_pro_2
DYD3_k127_999662_14	1090319.KE386571_gene758	2.512e-16	91.0	2DSF2@1|root,33FWB@2|Bacteria,1NGGP@1224|Proteobacteria,2UMB6@28211|Alphaproteobacteria,2K71I@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_999662_2	1122929.KB908215_gene902	4.235e-146	470.0	COG1236@1|root,COG1236@2|Bacteria,1MV7U@1224|Proteobacteria,2TQU5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	exonuclease of the beta-lactamase fold involved in RNA processing	MA20_22065	-	-	ko:K07577	-	-	-	-	ko00000	-	-	-	Lactamase_B
DYD3_k127_999662_0	1510531.JQJJ01000009_gene480	2.02e-237	745.0	COG1793@1|root,COG1793@2|Bacteria,1MV3S@1224|Proteobacteria,2TRQ9@28211|Alphaproteobacteria,3JRIV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA ligase	lig	-	6.5.1.1,6.5.1.6,6.5.1.7	ko:K10747	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00381,R00382,R10822,R10823	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N
DYD3_k127_999662_8	228405.HNE_3153	5.285e-85	292.0	COG2267@1|root,COG2267@2|Bacteria,1R9GQ@1224|Proteobacteria,2U3YF@28211|Alphaproteobacteria,43X16@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_999662_4	1082931.KKY_245	3.948e-140	451.0	COG0667@1|root,COG0667@2|Bacteria,1MWGZ@1224|Proteobacteria,2TTY4@28211|Alphaproteobacteria,3N64C@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	aldo keto reductase	-	-	1.1.1.65	ko:K05275	ko00750,ko01100,ko01120,map00750,map01100,map01120	-	R01708	RC00116	ko00000,ko00001,ko01000	-	-	-	Aldo_ket_red
DYD3_k127_999662_9	1160137.KB907308_gene6991	2.304e-60	218.0	COG2084@1|root,COG2084@2|Bacteria,2GTGE@201174|Actinobacteria,4G4IQ@85025|Nocardiaceae	201174|Actinobacteria	I	Domain of unknown function (DUF1932)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1932,F420_oxidored,NAD_binding_2
DYD3_k127_999662_12	1236959.BAMT01000015_gene2850	3.138e-18	95.0	28MSC@1|root,2ZB0S@2|Bacteria,1R8PG@1224|Proteobacteria,2W82N@28216|Betaproteobacteria,2KNHR@206350|Nitrosomonadales	206350|Nitrosomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_999662_13	1335760.ASTG01000003_gene1749	6.903e-17	85.0	2C42J@1|root,3359Y@2|Bacteria,1NJYP@1224|Proteobacteria,2UJHF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_999662_1	1248760.ANFZ01000002_gene2973	3.339e-218	704.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,2K18E@204457|Sphingomonadales	204457|Sphingomonadales	CG	Dehydrogenase	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_999662_11	1121013.P873_04870	5.964e-42	163.0	COG3751@1|root,COG3751@2|Bacteria,1N3MA@1224|Proteobacteria,1T0KF@1236|Gammaproteobacteria,1X7U3@135614|Xanthomonadales	135614|Xanthomonadales	O	2OG-Fe(II) oxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy_4
DYD3_k127_999662_3	627192.SLG_26390	9.487e-146	500.0	COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1QU0Y@1224|Proteobacteria,2TW5W@28211|Alphaproteobacteria,2KEBP@204457|Sphingomonadales	204457|Sphingomonadales	HP	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_999662_7	366602.Caul_4744	3.245e-125	416.0	COG0665@1|root,COG0665@2|Bacteria,1Q9VR@1224|Proteobacteria,2U05R@28211|Alphaproteobacteria,2KHYS@204458|Caulobacterales	204458|Caulobacterales	E	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_999662_6	450851.PHZ_c1075	3.829e-130	420.0	COG2813@1|root,COG2813@2|Bacteria,1QWWU@1224|Proteobacteria,2TX6V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	O-methyltransferase	crtF	-	2.1.1.210	ko:K09846	ko00906,ko01100,map00906,map01100	-	R07521,R07524,R07527,R07529,R07533,R07535	RC00003,RC02082	ko00000,ko00001,ko01000	-	-	-	Dimerisation2,Methyltransf_2
## 3802 queries scanned
## Total time (seconds): 10.247752904891968
## Rate: 371.01 q/s