## Sun Mar 16 16:32:24 2025 ## emapper-2.1.9 ## /home/zhangkaihang/.conda/envs/eggnog-mapper/bin/emapper.py -i /home/zhangkaihang/metadata_analysis/metawrap/paddysoil/4paddy/bin4gtdbtk/DYD3_bin.16.fa -m mmseqs --itype genome -o DYD3_bin.16 --output_dir /home/zhangkaihang/metadata_analysis/eggnog-mapper/paddysoil/4paddy/DYD3_bin.16 --cpu 8 ## #query seed_ortholog evalue score eggNOG_OGs max_annot_lvl COG_category Description Preferred_name GOs EC KEGG_ko KEGG_Pathway KEGG_Module KEGG_Reaction KEGG_rclass BRITE KEGG_TC CAZy BiGG_Reaction PFAMs DYD3_k127_1003662_6 700598.Niako_4909 2.103e-50 181.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INWS@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1003662_4 1185876.BN8_00875 2.566e-218 702.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NB6@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1003662_0 1279009.ADICEAN_02122 0.0 1039.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1003662_1 714943.Mucpa_2154 1.292e-296 934.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ9X@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1003662_2 1185876.BN8_01463 2.978e-252 801.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47U7G@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1003662_3 504472.Slin_4595 2.128e-245 781.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47N0R@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1003662_5 1123277.KB893172_gene538 3.209e-128 418.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1011264_2 700598.Niako_7079 2.954e-73 251.0 COG0848@1|root,COG0848@2|Bacteria,4NMT4@976|Bacteroidetes,1IRXT@117747|Sphingobacteriia 976|Bacteroidetes U PFAM Biopolymer transport protein ExbD TolR exbD1 - - - - - - - - - - - ExbD DYD3_k127_1011264_1 700598.Niako_7078 1.094e-154 492.0 COG0811@1|root,COG0811@2|Bacteria,4NE8M@976|Bacteroidetes,1INP5@117747|Sphingobacteriia 976|Bacteroidetes U PFAM MotA TolQ ExbB proton channel exbB - - ko:K03561 - - - - ko00000,ko02000 1.A.30.2.1 - - MotA_ExbB DYD3_k127_1011264_0 700598.Niako_7077 0.0 1259.0 COG5549@1|root,COG5549@2|Bacteria,4NEA0@976|Bacteroidetes,1IQA8@117747|Sphingobacteriia 976|Bacteroidetes O Domain of unknown function (DUF5118) - - - - - - - - - - - - DUF4953,DUF5117,DUF5118 DYD3_k127_1011264_3 344747.PM8797T_16048 1.969e-14 87.0 COG4409@1|root,COG4409@2|Bacteria 2|Bacteria G exo-alpha-(2->6)-sialidase activity - - - - - - - - - - - - BNR_2 DYD3_k127_1014845_1 861299.J421_0595 1.832e-36 145.0 COG0491@1|root,COG0491@2|Bacteria,1ZUBF@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Metallo-beta-lactamase superfamily - - - - - - - - - - - - - DYD3_k127_1014845_0 925409.KI911562_gene2333 1.046e-294 931.0 COG1629@1|root,COG4771@2|Bacteria,4P26N@976|Bacteroidetes,1IWRD@117747|Sphingobacteriia 976|Bacteroidetes P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarboxypepD_reg DYD3_k127_1016651_1 714943.Mucpa_1823 1.919e-22 96.0 COG2730@1|root,COG2730@2|Bacteria,4NEU5@976|Bacteroidetes,1IWQH@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 5 (cellulase A) family celA GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0033946,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0052736,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - BACON,Cellulase DYD3_k127_1016651_2 714943.Mucpa_1815 5.384e-06 49.0 COG3669@1|root,COG3669@2|Bacteria,4NEDX@976|Bacteroidetes,1IQ6C@117747|Sphingobacteriia 976|Bacteroidetes G PFAM coagulation factor 5 8 type - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,CHB_HEX_C_1,F5_F8_type_C,Fn3_assoc DYD3_k127_1016651_0 700598.Niako_2438 2.619e-291 900.0 COG2382@1|root,COG2382@2|Bacteria,4NF50@976|Bacteroidetes,1IPKM@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG2382 Enterochelin esterase - - - ko:K07214 - - - - ko00000 - - - Esterase,SASA DYD3_k127_101806_1 925409.KI911562_gene968 6.824e-40 158.0 COG2972@1|root,COG2972@2|Bacteria,4NHM5@976|Bacteroidetes,1IRRM@117747|Sphingobacteriia 976|Bacteroidetes T PFAM histidine kinase - - - - - - - - - - - - HATPase_c_5,His_kinase DYD3_k127_102087_0 485918.Cpin_6737 1.691e-129 418.0 COG2273@1|root,COG2273@2|Bacteria,4NHP5@976|Bacteroidetes,1IRKG@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase, family 16 - - 3.2.1.73 ko:K01216 - - - - ko00000,ko01000 - - - Glyco_hydro_16 DYD3_k127_102087_1 929556.Solca_1074 3.412e-60 213.0 COG2730@1|root,COG2730@2|Bacteria,4NH83@976|Bacteroidetes,1IPTK@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 5 (cellulase A) family - - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - CBM_6,Cellulase DYD3_k127_102287_2 700598.Niako_4433 9.203e-68 231.0 COG0242@1|root,COG0242@2|Bacteria,4NFB4@976|Bacteroidetes,1IRF3@117747|Sphingobacteriia 976|Bacteroidetes J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions def - 3.5.1.88 ko:K01462 - - - - ko00000,ko01000 - - - Pep_deformylase DYD3_k127_102287_1 700598.Niako_4432 6.687e-138 444.0 2CA60@1|root,2Z88P@2|Bacteria,4NJRW@976|Bacteroidetes,1IP54@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_102287_0 700598.Niako_4431 4.18e-198 623.0 COG0564@1|root,COG0564@2|Bacteria,4NEV3@976|Bacteroidetes,1IP51@117747|Sphingobacteriia 976|Bacteroidetes J Responsible for synthesis of pseudouridine from uracil rluD - 5.4.99.23 ko:K06180 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 DYD3_k127_102287_3 700598.Niako_4430 2.106e-48 176.0 COG0321@1|root,COG0321@2|Bacteria,4NE14@976|Bacteroidetes,1INNH@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate lipB GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 ko:K03801 ko00785,ko01100,map00785,map01100 - R07766,R07769 RC00039,RC00992,RC02867 ko00000,ko00001,ko01000 - - - BPL_LplA_LipB DYD3_k127_1023957_2 700598.Niako_4558 5.694e-45 164.0 COG3844@1|root,COG3844@2|Bacteria,4NECS@976|Bacteroidetes,1IQ2Y@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively kynU - 3.7.1.3 ko:K01556 ko00380,ko01100,map00380,map01100 M00038 R00987,R02668,R03936 RC00284,RC00415 ko00000,ko00001,ko00002,ko01000 - - - Aminotran_5 DYD3_k127_1023957_1 700598.Niako_4558 1.48e-112 367.0 COG3844@1|root,COG3844@2|Bacteria,4NECS@976|Bacteroidetes,1IQ2Y@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively kynU - 3.7.1.3 ko:K01556 ko00380,ko01100,map00380,map01100 M00038 R00987,R02668,R03936 RC00284,RC00415 ko00000,ko00001,ko00002,ko01000 - - - Aminotran_5 DYD3_k127_1023957_0 700598.Niako_4559 2.483e-116 380.0 COG1028@1|root,COG1028@2|Bacteria,4NICN@976|Bacteroidetes,1IRUS@117747|Sphingobacteriia 976|Bacteroidetes IQ PFAM Short-chain dehydrogenase reductase SDR - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD3_k127_1023957_3 700598.Niako_4560 1.698e-33 130.0 COG0584@1|root,COG0584@2|Bacteria,4NGI1@976|Bacteroidetes,1ISHR@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Glycerophosphoryl diester phosphodiesterase glpQ - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - GDPD,Phytase-like DYD3_k127_1024395_0 1122605.KB893628_gene4475 2.064e-238 752.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1INPI@117747|Sphingobacteriia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1024395_1 700598.Niako_7297 4.14e-95 314.0 COG0014@1|root,COG0014@2|Bacteria,4NEPQ@976|Bacteroidetes,1IPIT@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate proA GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 ko:K00147 ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230 M00015 R03313 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD3_k127_1027316_4 1121896.JMLU01000019_gene820 9.389e-26 110.0 COG0791@1|root,COG0791@2|Bacteria,4NSRM@976|Bacteroidetes,1IDNT@117743|Flavobacteriia,2NYVA@237|Flavobacterium 976|Bacteroidetes M NLP P60 protein - - - - - - - - - - - - - DYD3_k127_1027316_0 700598.Niako_5769 9.802e-127 412.0 COG3637@1|root,COG3637@2|Bacteria,4NE33@976|Bacteroidetes,1IWNX@117747|Sphingobacteriia 976|Bacteroidetes M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - - DYD3_k127_1027316_2 1121904.ARBP01000011_gene1424 4.165e-39 152.0 COG2353@1|root,COG2353@2|Bacteria,4NSJH@976|Bacteroidetes,47QHY@768503|Cytophagia 976|Bacteroidetes S Belongs to the UPF0312 family - - - - - - - - - - - - YceI DYD3_k127_1027316_3 700598.Niako_5772 1.095e-30 124.0 COG2010@1|root,COG2010@2|Bacteria,4NWPQ@976|Bacteroidetes 976|Bacteroidetes C Cytochrome c - - - - - - - - - - - - - DYD3_k127_1029062_2 1121481.AUAS01000008_gene2969 1.177e-139 451.0 COG3637@1|root,COG3637@2|Bacteria,4NE4Y@976|Bacteroidetes,47M0V@768503|Cytophagia 976|Bacteroidetes M RagB SusD domain protein - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_1029062_3 485918.Cpin_0313 6.967e-111 372.0 COG0457@1|root,COG0457@2|Bacteria,4NDTY@976|Bacteroidetes,1IPV6@117747|Sphingobacteriia 976|Bacteroidetes S Cytochrome c554 and c-prime - - - - - - - - - - - - Cytochrome_C554,Paired_CXXCH_1,TPR_2,TPR_8 DYD3_k127_1029062_0 1123248.KB893318_gene4144 2.88e-263 821.0 COG0308@1|root,COG0308@2|Bacteria,4NGUB@976|Bacteroidetes,1IWD6@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase family M1 domain - - - - - - - - - - - - Peptidase_M1 DYD3_k127_1029062_1 700598.Niako_5259 1.531e-150 481.0 COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,4NGHV@976|Bacteroidetes,1IQY1@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - - - - - - - - - - AraC_binding,Cupin_2,HTH_18 DYD3_k127_1029062_4 1121360.AUAQ01000011_gene80 6.318e-09 62.0 COG0188@1|root,COG0188@2|Bacteria,2GJ2Q@201174|Actinobacteria,22JI8@1653|Corynebacteriaceae 201174|Actinobacteria L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrA GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV,Intein_splicing,LAGLIDADG_3 DYD3_k127_1031750_0 525373.HMPREF0766_12878 1.895e-113 373.0 COG0330@1|root,COG0330@2|Bacteria,4NEBV@976|Bacteroidetes,1IQFX@117747|Sphingobacteriia 976|Bacteroidetes O Band 7 protein - - - - - - - - - - - - Band_7 DYD3_k127_1031750_1 485918.Cpin_1881 1.697e-19 89.0 COG4877@1|root,COG4877@2|Bacteria,4NXSU@976|Bacteroidetes,1IUPB@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - Arc,RHH_5 DYD3_k127_1032786_2 1123277.KB893172_gene695 7.758e-45 183.0 COG2972@1|root,COG2972@2|Bacteria,4NH1Q@976|Bacteroidetes,47PMI@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_1032786_1 313606.M23134_04067 6.419e-59 212.0 COG3279@1|root,COG3279@2|Bacteria,4NMTK@976|Bacteroidetes,47PS0@768503|Cytophagia 976|Bacteroidetes KT LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_1032786_0 700598.Niako_0941 2.513e-92 308.0 COG0475@1|root,COG0490@1|root,COG0569@1|root,COG0475@2|Bacteria,COG0490@2|Bacteria,COG0569@2|Bacteria,4NGF6@976|Bacteroidetes,1IQ4D@117747|Sphingobacteriia 976|Bacteroidetes P PFAM sodium hydrogen exchanger nhaA - - ko:K03455 - - - - ko00000 2.A.37 - - Na_H_Exchanger,TrkA_C DYD3_k127_1033631_0 700598.Niako_4427 2.776e-146 467.0 COG1208@1|root,COG1208@2|Bacteria,4PKJR@976|Bacteroidetes,1IPJU@117747|Sphingobacteriia 976|Bacteroidetes JM Nucleotidyl transferase - - - - - - - - - - - - NTP_transferase DYD3_k127_1033631_1 700598.Niako_4426 3.429e-114 379.0 COG0265@1|root,COG0265@2|Bacteria,4NGA4@976|Bacteroidetes,1IPPQ@117747|Sphingobacteriia 976|Bacteroidetes O peptidase S1 and S6 chymotrypsin Hap - - - - - - - - - - - - Trypsin_2 DYD3_k127_1033631_3 700598.Niako_4425 3.27e-93 308.0 COG1595@1|root,COG1595@2|Bacteria,4NM40@976|Bacteroidetes,1IRKZ@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - - - - - - - - - - Sigma70_r2 DYD3_k127_1033631_2 700598.Niako_4422 1.056e-95 315.0 COG0847@1|root,COG0847@2|Bacteria,4NE82@976|Bacteroidetes,1IPA8@117747|Sphingobacteriia 976|Bacteroidetes L DNA polymerase III - - 2.7.7.7 ko:K02342 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - RNase_T DYD3_k127_1042858_0 700598.Niako_5243 6.148e-150 480.0 COG1609@1|root,COG1609@2|Bacteria,4NDW6@976|Bacteroidetes,1IP9G@117747|Sphingobacteriia 976|Bacteroidetes K PFAM periplasmic binding protein LacI transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_1,Peripla_BP_3 DYD3_k127_1042858_1 172045.KS04_08535 1.026e-92 308.0 COG1331@1|root,COG1331@2|Bacteria,4PKHP@976|Bacteroidetes,1IJ9B@117743|Flavobacteriia,34QJZ@308865|Elizabethkingia 976|Bacteroidetes G Glycosyl Hydrolase Family 88 - - - - - - - - - - - - Glyco_hydro_88 DYD3_k127_1051508_0 700598.Niako_0156 1.026e-197 622.0 COG1228@1|root,COG1228@2|Bacteria,4NF27@976|Bacteroidetes,1IQD3@117747|Sphingobacteriia 976|Bacteroidetes Q amidohydrolase - - - - - - - - - - - - Amidohydro_1,Amidohydro_3 DYD3_k127_1051508_2 700598.Niako_0157 3.363e-165 530.0 COG1228@1|root,COG1228@2|Bacteria,4NE5U@976|Bacteroidetes,1IR43@117747|Sphingobacteriia 976|Bacteroidetes Q amidohydrolase - - - - - - - - - - - - Amidohydro_1,Amidohydro_3 DYD3_k127_1051508_1 1121904.ARBP01000004_gene1108 1.007e-166 539.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1053016_0 700598.Niako_6946 1.991e-191 602.0 COG2255@1|root,COG2255@2|Bacteria,4NEB9@976|Bacteroidetes,1IR3Y@117747|Sphingobacteriia 976|Bacteroidetes L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing ruvB - 3.6.4.12 ko:K03551 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvB_C,RuvB_N DYD3_k127_1053016_1 925409.KI911562_gene2506 7.13e-81 275.0 COG0518@1|root,COG0518@2|Bacteria,4NMFC@976|Bacteroidetes,1ISTT@117747|Sphingobacteriia 976|Bacteroidetes F glutamine amidotransferase - - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase DYD3_k127_1053016_3 700598.Niako_6944 9.418e-44 160.0 2C4KB@1|root,32YM4@2|Bacteria,4NUZU@976|Bacteroidetes,1IU8Z@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1053016_2 700598.Niako_6942 2.354e-68 234.0 COG0739@1|root,COG0739@2|Bacteria,4NN4Q@976|Bacteroidetes,1ISDJ@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Peptidase family M23 - - - - - - - - - - - - Peptidase_M23 DYD3_k127_1058157_3 700598.Niako_2730 1.269e-61 217.0 COG2202@1|root,COG2204@1|root,COG4585@1|root,COG2202@2|Bacteria,COG2204@2|Bacteria,COG4585@2|Bacteria,4NK7B@976|Bacteroidetes,1IW3P@117747|Sphingobacteriia 976|Bacteroidetes T signal transduction histidine kinase - - 2.7.13.3 ko:K07675 ko02020,map02020 M00473 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA_3,PAS_3,PAS_4,PAS_9,Response_reg DYD3_k127_1058157_4 700598.Niako_2731 3.563e-56 199.0 COG0745@1|root,COG0745@2|Bacteria,4NRCB@976|Bacteroidetes 976|Bacteroidetes T COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - Response_reg DYD3_k127_1058157_0 700598.Niako_2732 3.997e-225 706.0 COG3437@1|root,COG4251@1|root,COG3437@2|Bacteria,COG4251@2|Bacteria,4NDUQ@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - CHASE3,GAF_2,HAMP,HATPase_c,HisKA,PAS_3,PAS_9,Response_reg DYD3_k127_1058157_1 700598.Niako_2733 3.915e-75 256.0 COG2201@1|root,COG2201@2|Bacteria,4NNR3@976|Bacteroidetes,1ISQM@117747|Sphingobacteriia 976|Bacteroidetes NT protein-glutamate methylesterase cheB - 3.1.1.61,3.5.1.44 ko:K03412 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - CheB_methylest,Response_reg DYD3_k127_1058157_2 700598.Niako_2734 2.231e-73 248.0 COG1352@1|root,COG1352@2|Bacteria,4NFDS@976|Bacteroidetes 976|Bacteroidetes NT PFAM CheR methyltransferase, SAM binding domain cheR - 2.1.1.80 ko:K00575 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko01000,ko02035 - - - CheR,CheR_N DYD3_k127_1060657_2 468059.AUHA01000003_gene1881 4.025e-09 60.0 COG5549@1|root,COG5549@2|Bacteria,4NGSZ@976|Bacteroidetes,1IUU5@117747|Sphingobacteriia 976|Bacteroidetes O Dual-action HEIGH metallo-peptidase - - - - - - - - - - - - Peptidase_M57 DYD3_k127_1060657_0 700598.Niako_4693 2.908e-256 816.0 COG1404@1|root,COG1404@2|Bacteria,4NFMW@976|Bacteroidetes,1IU7A@117747|Sphingobacteriia 976|Bacteroidetes O Subtilase family - - - - - - - - - - - - Peptidase_S8 DYD3_k127_1060657_1 700598.Niako_4694 8.324e-17 79.0 COG0049@1|root,COG0049@2|Bacteria,4NEEM@976|Bacteroidetes,1IRJ7@117747|Sphingobacteriia 976|Bacteroidetes J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA rpsG GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02992 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S7 DYD3_k127_1062027_4 665959.HMPREF1013_01398 4.774e-08 55.0 COG4585@1|root,COG4585@2|Bacteria,1TQI3@1239|Firmicutes,4HAUU@91061|Bacilli,1ZDAA@1386|Bacillus 91061|Bacilli T Member of the two-component regulatory system DegS DegU, which plays an important role in the transition growth phase degS - 2.7.13.3 ko:K07777 ko02020,map02020 M00478 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DegS,HATPase_c,HisKA_3 DYD3_k127_1062027_3 1121930.AQXG01000007_gene413 6.114e-43 164.0 COG2197@1|root,COG2197@2|Bacteria,4NQNY@976|Bacteroidetes,1IY32@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1062027_5 351746.Pput_3129 0.0002689 46.0 COG2197@1|root,COG2197@2|Bacteria,1RJAM@1224|Proteobacteria,1S868@1236|Gammaproteobacteria 1236|Gammaproteobacteria K luxR family - - - - - - - - - - - - GerE DYD3_k127_1062027_1 700598.Niako_5273 7.192e-147 469.0 COG0224@1|root,COG0224@2|Bacteria,4NECM@976|Bacteroidetes,1IQEQ@117747|Sphingobacteriia 976|Bacteroidetes C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex atpG - - ko:K02115 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt DYD3_k127_1062027_2 700598.Niako_5272 3.027e-105 346.0 COG1386@1|root,COG1386@2|Bacteria,4NPG3@976|Bacteroidetes,1IS83@117747|Sphingobacteriia 976|Bacteroidetes D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves scpB - - ko:K06024 - - - - ko00000,ko03036 - - - SMC_ScpB DYD3_k127_1062027_0 925409.KI911562_gene51 7.049e-165 529.0 COG0019@1|root,COG0019@2|Bacteria,4NE7X@976|Bacteroidetes,1INXN@117747|Sphingobacteriia 976|Bacteroidetes E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine lysA - 4.1.1.20 ko:K01586 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R00451 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N,Orn_DAP_Arg_deC DYD3_k127_1086373_0 485918.Cpin_3395 3.784e-65 235.0 COG2972@1|root,COG2972@2|Bacteria,4NQ9H@976|Bacteroidetes,1IXAC@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_1086373_1 485918.Cpin_3396 7.517e-50 181.0 COG3279@1|root,COG3279@2|Bacteria,4NPK1@976|Bacteroidetes,1ISBE@117747|Sphingobacteriia 976|Bacteroidetes K response regulator, receiver - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_1086679_1 700598.Niako_0315 1.179e-112 367.0 COG1012@1|root,COG1012@2|Bacteria,4NEEZ@976|Bacteroidetes,1IQ3K@117747|Sphingobacteriia 976|Bacteroidetes C acyl-CoA reductase - - - - - - - - - - - - LuxC DYD3_k127_1086679_2 1123248.KB893329_gene4477 7.609e-69 233.0 COG1143@1|root,COG1143@2|Bacteria,4PKCQ@976|Bacteroidetes,1J0P2@117747|Sphingobacteriia 976|Bacteroidetes C 4Fe-4S binding domain fdx1 - - - - - - - - - - - Fer4_7 DYD3_k127_1086679_0 700598.Niako_0318 3.518e-142 455.0 COG1181@1|root,COG1181@2|Bacteria,4NE9P@976|Bacteroidetes,1INQY@117747|Sphingobacteriia 976|Bacteroidetes F Belongs to the D-alanine--D-alanine ligase family ddl - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N DYD3_k127_1087314_0 1122605.KB893639_gene3042 4.636e-196 632.0 COG4244@1|root,COG4244@2|Bacteria,4PN2J@976|Bacteroidetes,1J0ZC@117747|Sphingobacteriia 976|Bacteroidetes S Planctomycete cytochrome C - - - - - - - - - - - - CHB_HEX_C_1,F5_F8_type_C,Fn3_assoc,PSCyt1 DYD3_k127_1087314_1 1123278.KB893624_gene3209 1.702e-123 414.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47MF5@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,HTH_18,MacB_PCD DYD3_k127_1089635_2 925409.KI911562_gene3033 1.249e-94 314.0 COG0088@1|root,COG0088@2|Bacteria,4NEWZ@976|Bacteroidetes,1IRTU@117747|Sphingobacteriia 976|Bacteroidetes J Forms part of the polypeptide exit tunnel rplD - - ko:K02926 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L4 DYD3_k127_1089635_1 700598.Niako_4683 7.424e-111 363.0 COG0087@1|root,COG0087@2|Bacteria,4NEAN@976|Bacteroidetes,1IPGZ@117747|Sphingobacteriia 976|Bacteroidetes J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit rplC - - ko:K02906 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L3 DYD3_k127_1089635_3 700598.Niako_4684 3.356e-57 199.0 COG0051@1|root,COG0051@2|Bacteria,4NQ65@976|Bacteroidetes,1ISQN@117747|Sphingobacteriia 976|Bacteroidetes J Involved in the binding of tRNA to the ribosomes rpsJ GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02946 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S10 DYD3_k127_1089635_4 700598.Niako_4685 7.832e-44 170.0 2E042@1|root,32VSS@2|Bacteria,4NSXU@976|Bacteroidetes,1ITFS@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1089635_0 925409.KI911562_gene18 2.029e-232 724.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,4NETS@976|Bacteroidetes,1IQB5@117747|Sphingobacteriia 976|Bacteroidetes EU Dipeptidyl peptidase IV (DPP IV) N-terminal region - - 3.4.14.5 ko:K01278 ko04974,map04974 - - - ko00000,ko00001,ko01000,ko01002,ko04090,ko04147 - - - DPPIV_N,Peptidase_S9 DYD3_k127_1090422_1 700598.Niako_6028 7.55e-85 293.0 COG4942@1|root,COG4942@2|Bacteria 2|Bacteria D peptidase - - 2.1.1.72 ko:K03427 - - - - ko00000,ko01000,ko02048 - - - PDDEXK_2 DYD3_k127_1090422_0 700598.Niako_6029 2.378e-140 447.0 COG0528@1|root,COG0528@2|Bacteria,4NE8Z@976|Bacteroidetes,1IPN7@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the reversible phosphorylation of UMP to UDP pyrH - 2.7.4.22 ko:K09903 ko00240,ko01100,map00240,map01100 - R00158 RC00002 ko00000,ko00001,ko01000 - - - AA_kinase DYD3_k127_1090422_2 1267211.KI669560_gene2856 3.342e-58 210.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,1ITQW@117747|Sphingobacteriia 976|Bacteroidetes T COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1090422_3 398720.MED217_03190 1.308e-37 159.0 COG0457@1|root,COG4585@1|root,COG0457@2|Bacteria,COG4585@2|Bacteria,4NI1V@976|Bacteroidetes,1HWSH@117743|Flavobacteriia,2XJR8@283735|Leeuwenhoekiella 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_12,TPR_8 DYD3_k127_1090422_6 1089547.KB913013_gene4117 2.619e-11 75.0 2EUGI@1|root,33MYS@2|Bacteria,4NZ1U@976|Bacteroidetes,47T7V@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1090422_4 1121904.ARBP01000036_gene2102 8.793e-19 91.0 COG1404@1|root,COG1404@2|Bacteria,4NRWQ@976|Bacteroidetes 976|Bacteroidetes O Belongs to the peptidase S8 family - - - - - - - - - - - - - DYD3_k127_1091377_1 700598.Niako_6547 1.243e-105 344.0 COG2802@1|root,COG2802@2|Bacteria,4NEJU@976|Bacteroidetes,1IY3D@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase S16 lon domain protein - - 3.4.21.53 ko:K01338,ko:K07157 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - LON_substr_bdg DYD3_k127_1091377_0 700598.Niako_6548 1.171e-124 402.0 COG1521@1|root,COG1521@2|Bacteria,4NE9E@976|Bacteroidetes,1ISYG@117747|Sphingobacteriia 976|Bacteroidetes K Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis coaX - 2.7.1.33 ko:K03525 ko00770,ko01100,map00770,map01100 M00120 R02971,R03018,R04391 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Pan_kinase DYD3_k127_1091377_2 1123248.KB893348_gene286 8.621e-98 334.0 COG2067@1|root,COG2067@2|Bacteria,4NEP1@976|Bacteroidetes,1IPB7@117747|Sphingobacteriia 976|Bacteroidetes I membrane - - - - - - - - - - - - - DYD3_k127_1091377_3 700598.Niako_6549 1.202e-42 158.0 COG5375@1|root,COG5375@2|Bacteria,4PNV6@976|Bacteroidetes,1J0U1@117747|Sphingobacteriia 976|Bacteroidetes S Lipopolysaccharide-assembly, LptC-related - - - - - - - - - - - - LptC DYD3_k127_1095385_3 700598.Niako_5817 4.126e-28 114.0 COG0076@1|root,COG0076@2|Bacteria,4NFUP@976|Bacteroidetes,1IVP1@117747|Sphingobacteriia 976|Bacteroidetes E COGs COG0076 Glutamate decarboxylase and related PLP-dependent protein - - - - - - - - - - - - Pyridoxal_deC DYD3_k127_1095385_0 700598.Niako_5818 2.882e-182 574.0 COG0115@1|root,COG0115@2|Bacteria,4NEJY@976|Bacteroidetes,1IP2X@117747|Sphingobacteriia 976|Bacteroidetes EH Branched-chain amino acid aminotransferase ilvE - 2.6.1.42 ko:K00826 ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R10991 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 DYD3_k127_1095385_1 700598.Niako_5819 3.558e-90 304.0 COG1028@1|root,COG1028@2|Bacteria,4NQP4@976|Bacteroidetes,1IXUF@117747|Sphingobacteriia 976|Bacteroidetes IQ SPTR Short-chain dehydrogenase reductase SDR - - - - - - - - - - - - adh_short DYD3_k127_1095385_2 700598.Niako_5820 4.48e-48 173.0 COG0296@1|root,COG0296@2|Bacteria,4NJ7Z@976|Bacteroidetes,1IZWQ@117747|Sphingobacteriia 976|Bacteroidetes G Glycogen recognition site of AMP-activated protein kinase - - - - - - - - - - - - AMPK1_CBM DYD3_k127_1095385_4 925409.KI911562_gene2423 9.46e-24 109.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - - - - - - - - - - Usp DYD3_k127_1102435_2 700598.Niako_0542 1.586e-39 148.0 2BZBR@1|root,32YH6@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Transgly_assoc DYD3_k127_1102435_1 411476.BACOVA_00616 3.776e-40 158.0 28N3K@1|root,2ZB98@2|Bacteria,4NKYB@976|Bacteroidetes,2G05G@200643|Bacteroidia,4AWES@815|Bacteroidaceae 976|Bacteroidetes S L,D-transpeptidase catalytic domain - - - - - - - - - - - - YkuD_2 DYD3_k127_1102435_0 1123248.KB893359_gene2011 6.569e-50 181.0 COG0558@1|root,COG0558@2|Bacteria,4NHGH@976|Bacteroidetes,1IT19@117747|Sphingobacteriia 976|Bacteroidetes I CDP-alcohol phosphatidyltransferase - - 2.7.8.5 ko:K00995 ko00564,ko01100,map00564,map01100 - R01801 RC00002,RC00017,RC02795 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf DYD3_k127_1103964_2 1227739.Hsw_3662 4.629e-30 130.0 COG1629@1|root,COG4771@2|Bacteria,4NEIG@976|Bacteroidetes,47JGS@768503|Cytophagia 976|Bacteroidetes P TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD3_k127_1103964_0 504472.Slin_6616 1.656e-141 456.0 COG0667@1|root,COG0667@2|Bacteria,4NEB0@976|Bacteroidetes,47XE9@768503|Cytophagia 976|Bacteroidetes C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD3_k127_1103964_1 1123248.KB893326_gene1395 6.976e-33 130.0 2E373@1|root,32ZYW@2|Bacteria,4PQ2K@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1105110_1 700598.Niako_5085 2.005e-150 481.0 COG3653@1|root,COG3653@2|Bacteria,4NHDD@976|Bacteroidetes,1IVVS@117747|Sphingobacteriia 976|Bacteroidetes Q COGs COG3653 N-acyl-D-aspartate D-glutamate deacylase - - 3.5.1.81 ko:K06015 - - R02192 RC00064,RC00328 ko00000,ko01000 - - - Amidohydro_3 DYD3_k127_1105110_0 925409.KI911562_gene1496 1.398e-163 524.0 COG0626@1|root,COG0626@2|Bacteria,4NJRK@976|Bacteroidetes,1IP3G@117747|Sphingobacteriia 976|Bacteroidetes E Cys/Met metabolism PLP-dependent enzyme - - 4.4.1.11 ko:K01761 ko00270,ko00450,map00270,map00450 - R00654,R04770 RC00196,RC00348,RC01209,RC01210 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP DYD3_k127_1105110_2 700598.Niako_5086 6.203e-124 398.0 COG0332@1|root,COG0332@2|Bacteria,4NEYH@976|Bacteroidetes,1IPRR@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids fabH - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C DYD3_k127_1108625_0 1122605.KB893648_gene3677 0.0 1089.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,1IQN2@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 31 family - - 3.2.1.177 ko:K01811 - - - - ko00000,ko01000 - GH31 - DUF4968,DUF5110,Gal_mutarotas_2,Glyco_hydro_31 DYD3_k127_1108625_1 1122605.KB893648_gene3676 1.335e-78 265.0 COG1554@1|root,COG1554@2|Bacteria,4NEWW@976|Bacteroidetes,1INRU@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolase family 65, N-terminal domain - - 3.2.1.51 ko:K15923 ko00511,map00511 - - - ko00000,ko00001,ko01000 - GH95 - Glyco_hyd_65N_2 DYD3_k127_110969_2 929703.KE386491_gene3770 2.351e-77 279.0 COG0265@1|root,COG0265@2|Bacteria,4NW1E@976|Bacteroidetes 976|Bacteroidetes O Trypsin-like peptidase domain - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - Trypsin_2 DYD3_k127_110969_5 929703.KE386491_gene3766 1.214e-24 111.0 COG1716@1|root,COG1716@2|Bacteria 2|Bacteria T histone H2A K63-linked ubiquitination - - - - - - - - - - - - DUF4123,FHA,zinc_ribbon_2 DYD3_k127_110969_1 1123277.KB893182_gene4822 2.585e-83 289.0 COG2339@1|root,COG2339@2|Bacteria 2|Bacteria D peptidase activity - - - - - - - - - - - - DUF4339,PrsW-protease,zinc_ribbon_2 DYD3_k127_110969_4 153721.MYP_2859 2.846e-40 152.0 COG5646@1|root,COG5646@2|Bacteria,4NSDH@976|Bacteroidetes,47R0R@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 DYD3_k127_110969_3 755732.Fluta_3859 3.889e-58 204.0 COG3832@1|root,COG3832@2|Bacteria,4NQ4A@976|Bacteroidetes,1I391@117743|Flavobacteriia,2PBVY@246874|Cryomorphaceae 976|Bacteroidetes S PFAM Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_110969_0 1121957.ATVL01000007_gene1650 6.327e-119 397.0 COG2234@1|root,COG2234@2|Bacteria,4NFDJ@976|Bacteroidetes,47KZX@768503|Cytophagia 976|Bacteroidetes S PA domain - - - - - - - - - - - - PA,Peptidase_M28 DYD3_k127_1112498_0 1454007.JAUG01000054_gene2585 1.716e-197 627.0 COG1482@1|root,COG1940@1|root,COG1482@2|Bacteria,COG1940@2|Bacteria,4NF9A@976|Bacteroidetes,1IP62@117747|Sphingobacteriia 976|Bacteroidetes GK ROK family - - - - - - - - - - - - ROK DYD3_k127_1123317_3 700598.Niako_5471 6.766e-48 173.0 COG1866@1|root,COG1866@2|Bacteria,4NEGI@976|Bacteroidetes,1INP6@117747|Sphingobacteriia 976|Bacteroidetes C Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA pckA - 4.1.1.49 ko:K01610 ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200 M00003,M00170 R00341 RC00002,RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPCK_ATP DYD3_k127_1123317_2 700598.Niako_5472 3.812e-56 201.0 COG5661@1|root,COG5661@2|Bacteria,4NW11@976|Bacteroidetes 976|Bacteroidetes O secreted Zn-dependent protease - - - - - - - - - - - - DUF922 DYD3_k127_1123317_5 1131266.ARWQ01000081_gene704 1.644e-11 77.0 COG3119@1|root,arCOG02785@2157|Archaea 2157|Archaea P COG3119 Arylsulfatase A and related enzymes - - - - - - - - - - - - - DYD3_k127_1123317_1 700598.Niako_5473 2.573e-130 416.0 COG1428@1|root,COG1428@2|Bacteria,4NFA8@976|Bacteroidetes,1INU0@117747|Sphingobacteriia 976|Bacteroidetes F deoxynucleoside kinase dck - - - - - - - - - - - dNK DYD3_k127_1123317_0 1123248.KB893330_gene390 1.863e-158 506.0 COG0180@1|root,COG0180@2|Bacteria,4NETX@976|Bacteroidetes,1INYI@117747|Sphingobacteriia 976|Bacteroidetes J Tryptophanyl-tRNA synthetase trpS - 6.1.1.2 ko:K01867 ko00970,map00970 M00359,M00360 R03664 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_1b DYD3_k127_1123317_4 700598.Niako_5475 1.699e-38 146.0 COG0721@1|root,COG0721@2|Bacteria,4NV0A@976|Bacteroidetes,1ITUB@117747|Sphingobacteriia 976|Bacteroidetes J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) gatC - 6.3.5.6,6.3.5.7 ko:K02435 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - Glu-tRNAGln DYD3_k127_1124695_4 1121895.Q765_10635 1.747e-73 257.0 COG2204@1|root,COG3829@1|root,COG2204@2|Bacteria,COG3829@2|Bacteria,4NE89@976|Bacteroidetes,1I08N@117743|Flavobacteriia,2NV1T@237|Flavobacterium 976|Bacteroidetes KT Fis family transcriptional regulator - - - - - - - - - - - - GAF,HTH_8,PAS_3,PAS_9,Response_reg,Sigma54_activat DYD3_k127_1124695_0 1453498.LG45_02785 1.992e-129 443.0 COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1HWYS@117743|Flavobacteriia,2NVMV@237|Flavobacterium 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HATPase_c_2,HisKA_2,TPR_12,TPR_8 DYD3_k127_1124695_2 700598.Niako_3162 2.098e-93 314.0 COG2267@1|root,COG2267@2|Bacteria,4NGV3@976|Bacteroidetes,1IQWQ@117747|Sphingobacteriia 976|Bacteroidetes I Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_6 DYD3_k127_1124695_6 485918.Cpin_6060 2.177e-44 165.0 COG3279@1|root,COG3279@2|Bacteria,4NIXT@976|Bacteroidetes,1ISN5@117747|Sphingobacteriia 976|Bacteroidetes K Two component transcriptional regulator, LytTR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_1124695_1 485918.Cpin_5680 6.127e-123 405.0 COG0596@1|root,COG0596@2|Bacteria,4NFQZ@976|Bacteroidetes,1IU7T@117747|Sphingobacteriia 976|Bacteroidetes S Epoxide hydrolase domain protein - - - - - - - - - - - - Abhydrolase_1,EHN DYD3_k127_1124695_5 1246459.KB898365_gene2702 2.464e-48 175.0 COG0596@1|root,COG0596@2|Bacteria,1MWVN@1224|Proteobacteria,2TQVB@28211|Alphaproteobacteria,4B7GV@82115|Rhizobiaceae 28211|Alphaproteobacteria Q epoxide hydrolase - - 3.3.2.9 ko:K01253,ko:K21159 ko00980,ko01059,ko04976,ko05204,map00980,map01059,map04976,map05204 - R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443 RC01447,RC01728,RC01764,RC02528 ko00000,ko00001,ko01000,ko01002 - - - EHN DYD3_k127_1124695_3 990285.RGCCGE502_11641 5.591e-83 280.0 COG0596@1|root,COG0596@2|Bacteria,1MWVN@1224|Proteobacteria,2TQVB@28211|Alphaproteobacteria,4B7GV@82115|Rhizobiaceae 28211|Alphaproteobacteria Q epoxide hydrolase - - 3.3.2.9 ko:K01253,ko:K21159 ko00980,ko01059,ko04976,ko05204,map00980,map01059,map04976,map05204 - R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443 RC01447,RC01728,RC01764,RC02528 ko00000,ko00001,ko01000,ko01002 - - - EHN DYD3_k127_1138033_0 700598.Niako_6528 0.0 1172.0 COG1752@1|root,COG1752@2|Bacteria,4NF97@976|Bacteroidetes,1IWMA@117747|Sphingobacteriia 976|Bacteroidetes S Esterase of the alpha-beta hydrolase superfamily - - - - - - - - - - - - Patatin DYD3_k127_1138033_1 700598.Niako_6529 4.067e-11 64.0 COG1597@1|root,COG1597@2|Bacteria,4NJWB@976|Bacteroidetes,1IQ8Q@117747|Sphingobacteriia 976|Bacteroidetes I Diacylglycerol kinase - - - - - - - - - - - - DAGK_cat DYD3_k127_1144166_1 700598.Niako_7288 7.688e-42 156.0 COG1609@1|root,COG1609@2|Bacteria,4P1H0@976|Bacteroidetes,1IVEK@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn _helix lactose operon repressor - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI DYD3_k127_1144166_0 700598.Niako_7287 1.812e-304 939.0 COG0591@1|root,COG0591@2|Bacteria,4P03M@976|Bacteroidetes,1IW9I@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - ko:K03307 - - - - ko00000 2.A.21 - - SSF DYD3_k127_1155927_2 700598.Niako_1605 3.456e-105 345.0 COG0604@1|root,COG0604@2|Bacteria,4NGG9@976|Bacteroidetes,1INUD@117747|Sphingobacteriia 976|Bacteroidetes C Zinc-binding dehydrogenase - - - ko:K19745 ko00640,ko01100,map00640,map01100 - R00919 RC00095 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N DYD3_k127_1155927_1 700598.Niako_1604 2.124e-114 379.0 COG1018@1|root,COG1018@2|Bacteria,4NF24@976|Bacteroidetes,1IR7M@117747|Sphingobacteriia 976|Bacteroidetes C 2Fe-2S iron-sulfur cluster binding domain paaE - - ko:K02613 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001 - - - FAD_binding_6,Fer2,NAD_binding_1 DYD3_k127_1155927_4 1114922.CIFAM_06_03010 1.06e-19 96.0 COG0500@1|root,COG2226@2|Bacteria,1N8UJ@1224|Proteobacteria,1SN5A@1236|Gammaproteobacteria 1236|Gammaproteobacteria Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD3_k127_1155927_3 700598.Niako_1602 5.301e-81 273.0 COG0295@1|root,COG0295@2|Bacteria,4NQED@976|Bacteroidetes,1ITF8@117747|Sphingobacteriia 976|Bacteroidetes F cytidine and deoxycytidylate deaminase cdd - 3.5.4.5 ko:K01489 ko00240,ko00983,ko01100,map00240,map00983,map01100 - R01878,R02485,R08221 RC00074,RC00514 ko00000,ko00001,ko01000 - - - dCMP_cyt_deam_1 DYD3_k127_1155927_0 700598.Niako_1601 3.437e-251 784.0 COG0681@1|root,COG0681@2|Bacteria,4NFTP@976|Bacteroidetes,1IRAK@117747|Sphingobacteriia 976|Bacteroidetes U Belongs to the peptidase S26 family lepB - 3.4.21.89 ko:K03100 ko02024,ko03060,map02024,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S24,Peptidase_S26 DYD3_k127_1156845_2 700598.Niako_0430 1.324e-42 160.0 COG4487@1|root,COG4487@2|Bacteria,4NGZ9@976|Bacteroidetes,1IQMR@117747|Sphingobacteriia 976|Bacteroidetes S protein conserved in bacteria - - - - - - - - - - - - DUF2130 DYD3_k127_1156845_3 479432.Sros_5880 1.009e-31 130.0 2E5J0@1|root,330AB@2|Bacteria,2I805@201174|Actinobacteria,4ERAW@85012|Streptosporangiales 201174|Actinobacteria - - - - - - - - - - - - - - - DYD3_k127_1156845_0 743722.Sph21_0801 5.39e-112 368.0 COG3568@1|root,COG3568@2|Bacteria,4NHXV@976|Bacteroidetes,1IPNQ@117747|Sphingobacteriia 976|Bacteroidetes G Endonuclease Exonuclease phosphatase - - - - - - - - - - - - Exo_endo_phos DYD3_k127_1156845_1 1123248.KB893359_gene2164 1.733e-44 164.0 2EPP0@1|root,33H9M@2|Bacteria,4NXT6@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_116172_0 1150600.ADIARSV_2511 7.099e-195 618.0 COG0674@1|root,COG1013@1|root,COG1014@1|root,COG0674@2|Bacteria,COG1013@2|Bacteria,COG1014@2|Bacteria,4NF4F@976|Bacteroidetes,1IPIS@117747|Sphingobacteriia 976|Bacteroidetes C Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin nifJ - 1.2.7.1 ko:K03737 ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200 M00173,M00307 R01196,R10866 RC00004,RC02742 br01601,ko00000,ko00001,ko00002,ko01000 - - - EKR,Fer4_16,Fer4_7,PFOR_II,POR,POR_N,TPP_enzyme_C DYD3_k127_116172_1 1239962.C943_03777 1.591e-44 164.0 COG0446@1|root,COG0446@2|Bacteria,4NFUW@976|Bacteroidetes 976|Bacteroidetes S Pyridine nucleotide-disulphide oxidoreductase - - - - - - - - - - - - Pyr_redox_2 DYD3_k127_116172_2 1408813.AYMG01000039_gene2303 7.001e-17 81.0 COG0491@1|root,COG0491@2|Bacteria,4NH8C@976|Bacteroidetes,1IVMC@117747|Sphingobacteriia 976|Bacteroidetes S Metallo-beta-lactamase superfamily - - 3.5.2.6 ko:K17837 ko01501,map01501 - R06363 RC01499 ko00000,ko00001,ko01000 - - - Lactamase_B DYD3_k127_1171503_2 700598.Niako_2038 1.129e-56 218.0 COG0457@1|root,COG2972@1|root,COG0457@2|Bacteria,COG2972@2|Bacteria,4NF45@976|Bacteroidetes,1IXAB@117747|Sphingobacteriia 976|Bacteroidetes T Signal transduction histidine kinase, LytS - - - - - - - - - - - - 7TMR-DISMED2,7TMR-DISM_7TM,His_kinase,TPR_10,TPR_12,TPR_7,TPR_8 DYD3_k127_1171503_0 485918.Cpin_0638 1.058e-115 383.0 COG2207@1|root,COG2207@2|Bacteria,4NXE6@976|Bacteroidetes,1IU3C@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_1171503_1 1506583.JQJY01000008_gene4073 8.456e-68 237.0 COG1680@1|root,COG1680@2|Bacteria,4NI1Z@976|Bacteroidetes,1HYQF@117743|Flavobacteriia,2NT82@237|Flavobacterium 976|Bacteroidetes V beta-lactamase - - - - - - - - - - - - Beta-lactamase,DUF3471 DYD3_k127_1174032_3 485918.Cpin_2249 1.698e-18 87.0 COG3534@1|root,COG3534@2|Bacteria,4NECK@976|Bacteroidetes,1IP52@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-L-arabinofuranosidase domain protein - - 3.2.1.55 ko:K01209 ko00520,map00520 - R01762 - ko00000,ko00001,ko01000 - GH51 - Alpha-L-AF_C DYD3_k127_1174032_2 700598.Niako_4392 2.556e-162 519.0 COG2942@1|root,COG2942@2|Bacteria,4NEH7@976|Bacteroidetes,1IPKI@117747|Sphingobacteriia 976|Bacteroidetes G Catalyzes the reversible epimerization of cellobiose to 4-O-beta-D-glucopyranosyl-D-mannose (Glc-Man) bfce - 5.1.3.11 ko:K16213 - - R01445,R10810 RC00289 ko00000,ko01000 - - - GlcNAc_2-epim DYD3_k127_1174032_1 700598.Niako_4393 4.958e-207 649.0 COG2152@1|root,COG2152@2|Bacteria,4NGA2@976|Bacteroidetes,1IQ3P@117747|Sphingobacteriia 976|Bacteroidetes G Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose - - 2.4.1.281 ko:K16212 - - R09943 RC00049 ko00000,ko01000 - - - Glyco_hydro_130 DYD3_k127_1174032_0 700598.Niako_4394 7.056e-314 968.0 COG0591@1|root,COG0591@2|Bacteria,4PKHI@976|Bacteroidetes,1IR50@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - - - - - - - - - - SSF DYD3_k127_118262_0 1121904.ARBP01000004_gene780 1.448e-56 209.0 COG1073@1|root,COG1073@2|Bacteria,4NG6A@976|Bacteroidetes,47MDZ@768503|Cytophagia 976|Bacteroidetes S alpha beta - - - - - - - - - - - - - DYD3_k127_118262_1 471854.Dfer_0621 1.255e-34 136.0 COG2913@1|root,COG2913@2|Bacteria,4NYPJ@976|Bacteroidetes,47WT5@768503|Cytophagia 976|Bacteroidetes J Protein of unknown function (DUF3574) - - - - - - - - - - - - DUF3574 DYD3_k127_1185315_3 700598.Niako_0134 3.567e-62 216.0 COG0665@1|root,COG0665@2|Bacteria,4NFCD@976|Bacteroidetes,1IXHP@117747|Sphingobacteriia 976|Bacteroidetes E FAD dependent oxidoreductase thiO - - - - - - - - - - - DAO DYD3_k127_1185315_0 700598.Niako_5060 0.0 2784.0 COG2373@1|root,COG2373@2|Bacteria,4NEW9@976|Bacteroidetes,1INMI@117747|Sphingobacteriia 976|Bacteroidetes S alpha-2-macroglobulin domain protein - - - ko:K06894 - - - - ko00000 - - - A2M,A2M_N,A2M_N_2,MG1,Thiol-ester_cl DYD3_k127_1185315_1 700598.Niako_5061 0.0 1249.0 COG4953@1|root,COG4953@2|Bacteria,4NEG5@976|Bacteroidetes,1IP6N@117747|Sphingobacteriia 976|Bacteroidetes M Penicillin-binding Protein pbpC - 2.4.1.129 ko:K05367 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - BiPBP_C,Transgly,Transpeptidase DYD3_k127_1185315_2 700598.Niako_5063 6.936e-71 248.0 COG3595@1|root,COG3595@2|Bacteria,4NSAQ@976|Bacteroidetes,1ITBV@117747|Sphingobacteriia 976|Bacteroidetes S Putative auto-transporter adhesin, head GIN domain - - - - - - - - - - - - DUF2807 DYD3_k127_1187544_0 946077.W5A_05828 0.0 1199.0 COG0823@1|root,COG1228@1|root,COG0823@2|Bacteria,COG1228@2|Bacteria,4PM8I@976|Bacteroidetes,1HZ2Z@117743|Flavobacteriia 976|Bacteroidetes QU COG0823 Periplasmic component of the Tol biopolymer transport system - - - - - - - - - - - - Amidohydro_1,PD40 DYD3_k127_1187544_1 700598.Niako_5668 5.246e-13 72.0 2CD0I@1|root,30JWK@2|Bacteria,4P4YR@976|Bacteroidetes,1IY9W@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4399) - - - - - - - - - - - - DUF4399 DYD3_k127_1196617_2 700598.Niako_6733 8.901e-113 366.0 COG2197@1|root,COG2197@2|Bacteria,4NKAD@976|Bacteroidetes,1IT3A@117747|Sphingobacteriia 976|Bacteroidetes K Two component transcriptional regulator, LuxR family - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1196617_1 700598.Niako_6732 2.743e-116 378.0 COG4585@1|root,COG4585@2|Bacteria,4NI65@976|Bacteroidetes,1J05S@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_12,TPR_8 DYD3_k127_1196617_0 700598.Niako_6728 1.46e-197 619.0 COG1533@1|root,COG1533@2|Bacteria,4NE62@976|Bacteroidetes,1IPD6@117747|Sphingobacteriia 976|Bacteroidetes L Radical SAM - - - - - - - - - - - - Radical_SAM DYD3_k127_1196617_4 700598.Niako_6727 7.879e-100 330.0 COG1514@1|root,COG1514@2|Bacteria,4NX5U@976|Bacteroidetes,1IYZ5@117747|Sphingobacteriia 976|Bacteroidetes J 2'-5' RNA ligase superfamily - - - - - - - - - - - - 2_5_RNA_ligase2 DYD3_k127_1196617_6 700598.Niako_6726 1.264e-66 233.0 COG1514@1|root,COG1514@2|Bacteria 2|Bacteria J Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester - - - - - - - - - - - - 2_5_RNA_ligase2 DYD3_k127_1196617_5 700598.Niako_6725 6.905e-68 233.0 COG1974@1|root,COG1974@2|Bacteria,4NQXK@976|Bacteroidetes 976|Bacteroidetes KT Belongs to the peptidase S24 family umuD - - ko:K03503 - - - - ko00000,ko01000,ko01002,ko03400 - - - Peptidase_S24 DYD3_k127_1196617_3 700598.Niako_6724 3.828e-102 335.0 COG0389@1|root,COG0389@2|Bacteria,4NGPH@976|Bacteroidetes,1IPQQ@117747|Sphingobacteriia 976|Bacteroidetes L COGs COG0389 Nucleotidyltransferase DNA polymerase involved in DNA repair umuC - - ko:K03502 - - - - ko00000,ko03400 - - - DUF4113,IMS,IMS_C,IMS_HHH DYD3_k127_1205477_4 700598.Niako_7284 1.016e-05 52.0 COG4977@1|root,COG4977@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - AraC_binding,HTH_18,HTH_AraC DYD3_k127_1205477_0 471854.Dfer_5587 2.768e-135 439.0 COG0673@1|root,COG0673@2|Bacteria,4NE75@976|Bacteroidetes,47JGE@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_1205477_3 1227352.C173_17751 4.962e-13 72.0 COG2312@1|root,COG2312@2|Bacteria,1V2D8@1239|Firmicutes,4HGGF@91061|Bacilli,26VAX@186822|Paenibacillaceae 91061|Bacilli M Erythromycin esterase - - - ko:K06880 - - - - ko00000,ko01000,ko01504 - - - Erythro_esteras DYD3_k127_1205477_2 463191.SSEG_02357 3.484e-28 117.0 COG0346@1|root,COG0346@2|Bacteria,2IIMV@201174|Actinobacteria 201174|Actinobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase,TetR_N DYD3_k127_1205477_1 700598.Niako_0254 7.613e-59 210.0 COG3503@1|root,COG3503@2|Bacteria,4NFAF@976|Bacteroidetes,1IVK9@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1624) - - - - - - - - - - - - DUF1624 DYD3_k127_1217612_0 700598.Niako_5795 2.254e-204 638.0 COG1530@1|root,COG1530@2|Bacteria,4NED1@976|Bacteroidetes,1IQ78@117747|Sphingobacteriia 976|Bacteroidetes J ribonuclease, Rne Rng family rng - - ko:K08301 - - - - ko00000,ko01000,ko03009,ko03019 - - - RNase_E_G,S1 DYD3_k127_1217612_1 1166018.FAES_0316 8.931e-153 495.0 COG3193@1|root,COG3193@2|Bacteria,4NENU@976|Bacteroidetes,47N6Q@768503|Cytophagia 976|Bacteroidetes S RagB SusD domain protein - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_1217612_2 468059.AUHA01000002_gene1103 7.575e-108 355.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1J0IJ@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1222341_2 700598.Niako_6415 1.527e-88 294.0 COG0370@1|root,COG0370@2|Bacteria,4NEII@976|Bacteroidetes,1IPAK@117747|Sphingobacteriia 976|Bacteroidetes P transporter of a GTP-driven Fe(2 ) uptake system feoB - - ko:K04759 - - - - ko00000,ko02000 9.A.8.1 - - FeoA,FeoB_C,FeoB_N,Gate DYD3_k127_1222341_0 700598.Niako_6416 8.761e-270 844.0 COG3589@1|root,COG3589@2|Bacteria,4NE7B@976|Bacteroidetes,1IP2A@117747|Sphingobacteriia 976|Bacteroidetes S PFAM glycoside hydrolase - - - - - - - - - - - - GH97_C,GH97_N,Glyco_hydro_97 DYD3_k127_1222341_1 700598.Niako_6417 3.817e-157 500.0 COG1052@1|root,COG1052@2|Bacteria,4NF1R@976|Bacteroidetes,1IRC8@117747|Sphingobacteriia 976|Bacteroidetes CH D-isomer specific 2-hydroxyacid dehydrogenase ldhA - 1.1.1.28 ko:K03778 ko00620,ko01120,map00620,map01120 - R00704 RC00044 ko00000,ko00001,ko01000 - - - 2-Hacid_dh,2-Hacid_dh_C DYD3_k127_1222341_3 700598.Niako_6418 2.448e-53 189.0 COG0017@1|root,COG0017@2|Bacteria,4NDY4@976|Bacteroidetes,1IPJK@117747|Sphingobacteriia 976|Bacteroidetes J Asparaginyl-tRNA synthetase asnS - 6.1.1.22 ko:K01893 ko00970,map00970 M00359,M00360 R03648 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon DYD3_k127_1224735_2 1121101.HMPREF1532_02472 6.249e-08 63.0 COG0745@1|root,COG2207@1|root,COG3292@1|root,COG5002@1|root,COG0745@2|Bacteria,COG2207@2|Bacteria,COG3292@2|Bacteria,COG5002@2|Bacteria,4NIEK@976|Bacteroidetes,2FMAP@200643|Bacteroidia,4AKI4@815|Bacteroidaceae 976|Bacteroidetes T Psort location CytoplasmicMembrane, score - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_1224735_0 700598.Niako_5463 2.372e-62 221.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,1ITQW@117747|Sphingobacteriia 976|Bacteroidetes T COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1224735_1 485918.Cpin_3101 2.599e-62 225.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NPAJ@976|Bacteroidetes 976|Bacteroidetes T Two component regulator three Y - - - - - - - - - - - - HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_1237334_0 700598.Niako_5045 6.314e-173 559.0 COG1404@1|root,COG1404@2|Bacteria,4NEIJ@976|Bacteroidetes,1IVJP@117747|Sphingobacteriia 976|Bacteroidetes O S53, subtilisin kexin sedolisin aprN - - - - - - - - - - - Peptidase_S8 DYD3_k127_1237334_1 700598.Niako_5044 6.701e-98 327.0 COG0144@1|root,COG0144@2|Bacteria,4NEV7@976|Bacteroidetes,1IPTE@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family rsmB - 2.1.1.176 ko:K03500 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,Methyltr_RsmF_N DYD3_k127_1241124_1 1122176.KB903539_gene1373 1.319e-66 230.0 COG0783@1|root,COG0783@2|Bacteria,4NQDD@976|Bacteroidetes,1ISAY@117747|Sphingobacteriia 976|Bacteroidetes P Belongs to the Dps family dps - - ko:K04047 - - - - ko00000,ko03036 - - - Ferritin DYD3_k127_1241124_0 1123248.KB893359_gene2021 7.102e-75 260.0 COG0726@1|root,COG0726@2|Bacteria,4NGMX@976|Bacteroidetes,1IPFM@117747|Sphingobacteriia 976|Bacteroidetes G xylanase chitin deacetylase - - - - - - - - - - - - Polysacc_deac_1 DYD3_k127_1241124_2 700598.Niako_3259 2.872e-23 102.0 COG1544@1|root,COG1544@2|Bacteria 2|Bacteria J regulation of translation hpf - - ko:K05808,ko:K05809 - - - - ko00000,ko03009 - - - Ribosom_S30AE_C,Ribosomal_S30AE DYD3_k127_1241124_3 1123248.KB893316_gene4617 8.827e-23 102.0 2EDGF@1|root,337CN@2|Bacteria,4NXB6@976|Bacteroidetes,1IZW7@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1253279_7 700598.Niako_5303 7.45e-31 123.0 COG1595@1|root,COG1595@2|Bacteria,4NR0P@976|Bacteroidetes,1IXSK@117747|Sphingobacteriia 976|Bacteroidetes K sigma70 factor - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_1253279_2 1123276.KB893312_gene2977 4.369e-157 501.0 COG1063@1|root,COG1063@2|Bacteria,4NHCK@976|Bacteroidetes,47K5V@768503|Cytophagia 976|Bacteroidetes E alcohol dehydrogenase - - - - - - - - - - - - ADH_N,ADH_zinc_N DYD3_k127_1253279_6 1121887.AUDK01000017_gene71 1.087e-46 174.0 COG3507@1|root,COG3507@2|Bacteria,4NFXE@976|Bacteroidetes,1HZNM@117743|Flavobacteriia,2NS8U@237|Flavobacterium 976|Bacteroidetes G Belongs to the glycosyl hydrolase 43 family xynBA - - - - - - - - - - - Glyco_hydro_43 DYD3_k127_1253279_3 1122605.KB893626_gene2590 5.333e-134 436.0 COG3866@1|root,COG3866@2|Bacteria,4P09P@976|Bacteroidetes,1IP71@117747|Sphingobacteriia 976|Bacteroidetes G Pectate lyase - - - - - - - - - - - - - DYD3_k127_1253279_1 700598.Niako_5313 5.841e-175 554.0 COG1609@1|root,COG1609@2|Bacteria,4NDW6@976|Bacteroidetes,1IPD3@117747|Sphingobacteriia 976|Bacteroidetes K PFAM periplasmic binding protein LacI transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_1,Peripla_BP_3,Peripla_BP_4 DYD3_k127_1253279_5 700598.Niako_5314 1.733e-78 268.0 COG0120@1|root,COG0120@2|Bacteria,4NMB9@976|Bacteroidetes,1ISPR@117747|Sphingobacteriia 976|Bacteroidetes G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate rpiA - 5.3.1.6 ko:K01807 ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167,M00580 R01056 RC00434 ko00000,ko00001,ko00002,ko01000 - - - Rib_5-P_isom_A DYD3_k127_1253279_8 700598.Niako_3480 5.646e-11 70.0 2DTQW@1|root,33MB8@2|Bacteria,4P99T@976|Bacteroidetes,1J00K@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1253279_0 700598.Niako_5315 1.038e-247 772.0 COG1167@1|root,COG1167@2|Bacteria,4NGKQ@976|Bacteroidetes,1IPKF@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator - - - - - - - - - - - - Aminotran_1_2,GntR DYD3_k127_1253279_4 700598.Niako_5316 1.474e-85 287.0 COG0746@1|root,COG0746@2|Bacteria,4PG92@976|Bacteroidetes,1ITAM@117747|Sphingobacteriia 976|Bacteroidetes H Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor - - 2.7.7.77 ko:K03752 ko00790,ko01100,map00790,map01100 - R11581 - ko00000,ko00001,ko01000 - - - NTP_transf_3 DYD3_k127_1260870_0 700598.Niako_2998 0.0 1235.0 COG0525@1|root,COG0525@2|Bacteria,4NETB@976|Bacteroidetes,1IPEY@117747|Sphingobacteriia 976|Bacteroidetes J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner valS GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 ko:K01873 ko00970,map00970 M00359,M00360 R03665 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1 DYD3_k127_1260870_1 700598.Niako_2995 6.242e-227 709.0 COG0322@1|root,COG0847@1|root,COG0322@2|Bacteria,COG0847@2|Bacteria,4NEQX@976|Bacteroidetes,1IQ4K@117747|Sphingobacteriia 976|Bacteroidetes L DNA polymerase III, epsilon subunit - - 2.7.7.7 ko:K02342 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - GIY-YIG,RNase_T DYD3_k127_1260870_3 700598.Niako_2994 1.36e-46 173.0 2ED32@1|root,336ZY@2|Bacteria,4NWNT@976|Bacteroidetes,1J01D@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1260870_2 925409.KI911562_gene868 1.732e-115 376.0 COG4947@1|root,COG4947@2|Bacteria,4NJWM@976|Bacteroidetes,1IVCZ@117747|Sphingobacteriia 976|Bacteroidetes S Putative esterase - - - - - - - - - - - - Esterase DYD3_k127_126238_0 688270.Celal_1773 4.987e-289 905.0 COG1629@1|root,COG4771@2|Bacteria,4NF05@976|Bacteroidetes,1HX6P@117743|Flavobacteriia,1FABD@104264|Cellulophaga 976|Bacteroidetes M COGs COG4771 Outer membrane receptor for ferrienterochelin and colicins - - - ko:K02014,ko:K16089 - - - - ko00000,ko02000 1.B.14,1.B.14.1,1.B.14.10 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1278815_0 700598.Niako_2920 0.0 1686.0 COG1807@1|root,COG1807@2|Bacteria,4PKJX@976|Bacteroidetes,1IX43@117747|Sphingobacteriia 976|Bacteroidetes M Protein of unknown function (DUF2723) - - - - - - - - - - - - DUF2723 DYD3_k127_1281787_2 1137281.D778_01040 1.709e-20 92.0 COG1524@1|root,COG1524@2|Bacteria,4NE94@976|Bacteroidetes,1HXJR@117743|Flavobacteriia 976|Bacteroidetes P type I phosphodiesterase nucleotide pyrophosphatase pafA - - - - - - - - - - - Phosphodiest DYD3_k127_1281787_1 1123037.AUDE01000014_gene458 3.068e-55 198.0 COG1670@1|root,COG1670@2|Bacteria,4NQ8K@976|Bacteroidetes,1I27H@117743|Flavobacteriia 976|Bacteroidetes J acetyltransferase speG - 2.3.1.57 ko:K00657 ko00330,ko01100,ko04216,map00330,map01100,map04216 M00135 R01154 RC00004,RC00096 ko00000,ko00001,ko00002,ko01000 - - - Acetyltransf_3 DYD3_k127_1281787_0 1267211.KI669560_gene904 1.908e-57 203.0 COG0044@1|root,COG0044@2|Bacteria,4NE3T@976|Bacteroidetes,1IQSD@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides pyrC - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 DYD3_k127_1282377_4 700598.Niako_5761 1.204e-16 82.0 COG0668@1|root,COG0668@2|Bacteria,4NHU7@976|Bacteroidetes,1INNS@117747|Sphingobacteriia 976|Bacteroidetes M mechanosensitive ion channel - - - ko:K16052 - - - - ko00000,ko02000 1.A.23.4 - - MS_channel DYD3_k127_1282377_1 700598.Niako_5762 9.369e-118 384.0 2CGN1@1|root,3348T@2|Bacteria,4NX4E@976|Bacteroidetes,1IUF2@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1282377_0 700598.Niako_5763 2.151e-147 468.0 COG2908@1|root,COG2908@2|Bacteria,4NEF1@976|Bacteroidetes,1IQ9A@117747|Sphingobacteriia 976|Bacteroidetes S Calcineurin-like phosphoesterase lpxH - 3.6.1.54 ko:K03269 ko00540,ko01100,map00540,map01100 M00060 R04549 RC00002 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Metallophos,Metallophos_2 DYD3_k127_1282377_2 700598.Niako_5764 1.823e-26 113.0 COG2105@1|root,COG2105@2|Bacteria,4NUSS@976|Bacteroidetes,1IZG0@117747|Sphingobacteriia 976|Bacteroidetes S Gamma-glutamyl cyclotransferase, AIG2-like - - - - - - - - - - - - GGACT DYD3_k127_1282377_3 700598.Niako_5765 2.448e-23 99.0 COG1556@1|root,COG1556@2|Bacteria,4NIGX@976|Bacteroidetes,1IRJ2@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Uncharacterised ACR, YkgG family COG1556 - - - ko:K00782 - - - - ko00000 - - - LUD_dom DYD3_k127_1287227_0 1123248.KB893317_gene4298 8.33e-290 895.0 COG2303@1|root,COG2303@2|Bacteria,4NEF2@976|Bacteroidetes,1IWH6@117747|Sphingobacteriia 976|Bacteroidetes E GMC oxidoreductase - - - - - - - - - - - - GMC_oxred_C,GMC_oxred_N DYD3_k127_1287227_2 485918.Cpin_5080 4.021e-33 134.0 2CDAN@1|root,309X8@2|Bacteria,4NP84@976|Bacteroidetes,1IUB9@117747|Sphingobacteriia 976|Bacteroidetes S Gluconate 2-dehydrogenase subunit 3 - - - - - - - - - - - - Gluconate_2-dh3 DYD3_k127_1287227_1 700598.Niako_0747 4.001e-93 310.0 COG0526@1|root,COG1225@1|root,COG0526@2|Bacteria,COG1225@2|Bacteria,4NMEK@976|Bacteroidetes,1IPR4@117747|Sphingobacteriia 976|Bacteroidetes CO PFAM Alkyl hydroperoxide reductase - - - - - - - - - - - - AhpC-TSA,Redoxin DYD3_k127_1291282_1 1121406.JAEX01000016_gene1882 7.834e-62 217.0 COG0500@1|root,COG2226@2|Bacteria,1N73D@1224|Proteobacteria,42XDU@68525|delta/epsilon subdivisions,2WRMM@28221|Deltaproteobacteria,2MD77@213115|Desulfovibrionales 28221|Deltaproteobacteria Q PFAM Methyltransferase type 11 - - - - - - - - - - - - Methyltransf_11 DYD3_k127_1291282_0 521011.Mpal_2194 7.071e-66 234.0 arCOG09486@1|root,arCOG09486@2157|Archaea,2Y3W1@28890|Euryarchaeota 28890|Euryarchaeota M PFAM glycosyl transferase family 11 - - - - - - - - - - - - Glyco_transf_11 DYD3_k127_1291282_2 700598.Niako_3014 7.595e-38 146.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_1294766_0 700598.Niako_5077 3.469e-92 306.0 COG2107@1|root,COG2107@2|Bacteria,4NFAN@976|Bacteroidetes,1INXU@117747|Sphingobacteriia 976|Bacteroidetes S Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) mqnD - - ko:K11785 ko00130,ko01110,map00130,map01110 - R08589 RC02330 ko00000,ko00001,ko01000 - - - VitK2_biosynth DYD3_k127_1294766_3 700598.Niako_5078 3.12e-73 254.0 COG0775@1|root,COG0775@2|Bacteria,4NQVQ@976|Bacteroidetes,1IT1C@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) mqnB - 3.2.2.26 ko:K11783 ko00130,ko01110,map00130,map01110 - R08587 RC00063,RC00318 ko00000,ko00001,ko01000 - - - PNP_UDP_1 DYD3_k127_1294766_4 1267211.KI669560_gene1224 8.969e-72 243.0 COG0720@1|root,COG0720@2|Bacteria,4NNY0@976|Bacteroidetes,1ISCG@117747|Sphingobacteriia 976|Bacteroidetes H 6-pyruvoyl tetrahydrobiopterin synthase - - 4.1.2.50,4.2.3.12 ko:K01737 ko00790,ko01100,map00790,map01100 M00842,M00843 R04286,R09959 RC01117,RC02846,RC02847 ko00000,ko00001,ko00002,ko01000,ko03016 - - - PTPS DYD3_k127_1294766_2 700598.Niako_5080 1.622e-74 251.0 COG0720@1|root,COG0720@2|Bacteria,4NNIS@976|Bacteroidetes,1IXPD@117747|Sphingobacteriia 976|Bacteroidetes H 6-pyruvoyl tetrahydropterin synthase ygcM - 4.1.2.50,4.2.3.12 ko:K01737 ko00790,ko01100,map00790,map01100 M00842,M00843 R04286,R09959 RC01117,RC02846,RC02847 ko00000,ko00001,ko00002,ko01000,ko03016 - - - PTPS DYD3_k127_1294766_1 1123248.KB893322_gene601 8.49e-83 276.0 COG0302@1|root,COG0302@2|Bacteria,4NFC2@976|Bacteroidetes,1IPBD@117747|Sphingobacteriia 976|Bacteroidetes H GTP cyclohydrolase folE GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 ko:K01495 ko00790,ko01100,map00790,map01100 M00126,M00841,M00842,M00843 R00428,R04639,R05046,R05048 RC00263,RC00294,RC00323,RC00945,RC01188 ko00000,ko00001,ko00002,ko01000 - - - GTP_cyclohydroI DYD3_k127_1295753_1 525904.Tter_1958 9.797e-82 279.0 COG0129@1|root,COG0129@2|Bacteria,2NNSM@2323|unclassified Bacteria 2|Bacteria EG Belongs to the IlvD Edd family ilvD4 - 4.2.1.82,4.2.1.9 ko:K01687,ko:K22186 ko00040,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00040,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R01209,R02429,R04441,R05070 RC00468,RC00543,RC01714 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD DYD3_k127_1295753_0 1123277.KB893174_gene6071 3.311e-100 336.0 COG0697@1|root,COG0697@2|Bacteria,4NHXC@976|Bacteroidetes,47T35@768503|Cytophagia 976|Bacteroidetes EG EamA-like transporter family - - - - - - - - - - - - EamA DYD3_k127_1295753_3 1122915.AUGY01000005_gene5771 6.083e-58 212.0 COG1028@1|root,COG1028@2|Bacteria,1TSPJ@1239|Firmicutes,4HCGT@91061|Bacilli,26VZM@186822|Paenibacillaceae 91061|Bacilli IQ KR domain - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD3_k127_1300724_0 700598.Niako_4480 7.372e-208 659.0 COG3291@1|root,COG3291@2|Bacteria,4NPDM@976|Bacteroidetes,1IW61@117747|Sphingobacteriia 976|Bacteroidetes G PFAM PKD domain - - - - - - - - - - - - CHU_C,PKD DYD3_k127_1300724_1 700598.Niako_5494 4.754e-152 487.0 COG2067@1|root,COG2067@2|Bacteria,4NIU4@976|Bacteroidetes,1IQ3Y@117747|Sphingobacteriia 976|Bacteroidetes I protein CHP03519, membrane, Bacteroidetes - - - - - - - - - - - - PorP_SprF DYD3_k127_1300724_2 700598.Niako_6992 4.016e-136 437.0 COG0770@1|root,COG0770@2|Bacteria,4NDWD@976|Bacteroidetes,1IQA5@117747|Sphingobacteriia 976|Bacteroidetes M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein murF - 6.3.2.10 ko:K01929 ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502 - R04573,R04617 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M DYD3_k127_1303903_7 1122605.KB893646_gene107 2.377e-40 151.0 COG0861@1|root,COG0861@2|Bacteria,4NH7P@976|Bacteroidetes,1IQW6@117747|Sphingobacteriia 976|Bacteroidetes P Integral membrane protein TerC - - - ko:K05794 - - - - ko00000 - - - TerC DYD3_k127_1303903_1 700598.Niako_5633 1.444e-167 544.0 COG3225@1|root,COG3225@2|Bacteria,4NF62@976|Bacteroidetes,1IR8V@117747|Sphingobacteriia 976|Bacteroidetes N transport system involved in gliding motility, auxiliary component gldG - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC_transp_aux DYD3_k127_1303903_2 700598.Niako_5634 8.58e-126 405.0 COG1277@1|root,COG1277@2|Bacteria,4NG5G@976|Bacteroidetes,1IRI4@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM Gliding motility-associated ABC transporter permease protein GldF gldF - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC2_membrane_3 DYD3_k127_1303903_6 700598.Niako_5635 6.915e-54 190.0 COG0316@1|root,COG0316@2|Bacteria,4NQC8@976|Bacteroidetes,1IT1Q@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the HesB IscA family iscA - - ko:K13628 - - - - ko00000,ko03016 - - - Fe-S_biosyn DYD3_k127_1303903_0 700598.Niako_5636 2.09e-186 588.0 COG1104@1|root,COG1104@2|Bacteria,4NG58@976|Bacteroidetes,1IQ14@117747|Sphingobacteriia 976|Bacteroidetes E Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins iscS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 DYD3_k127_1303903_5 700598.Niako_5637 7.65e-60 209.0 COG0346@1|root,COG0346@2|Bacteria,4NNGG@976|Bacteroidetes,1ISVM@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Glyoxalase bleomycin resistance protein dioxygenase mce - 5.1.99.1 ko:K05606 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00373,M00375,M00376,M00741 R02765,R09979 RC00780,RC02739 ko00000,ko00001,ko00002,ko01000 - - - Glyoxalase_4 DYD3_k127_1303903_4 700598.Niako_5638 5.296e-88 294.0 COG1846@1|root,COG1846@2|Bacteria,4NH0E@976|Bacteroidetes,1ISHG@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator, MarR - - - - - - - - - - - - MarR_2 DYD3_k127_1303903_3 313606.M23134_01381 1.009e-120 396.0 COG2133@1|root,COG2133@2|Bacteria,4NDV1@976|Bacteroidetes,47MXD@768503|Cytophagia 976|Bacteroidetes G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - GSDH DYD3_k127_1313680_0 1121481.AUAS01000017_gene2502 1.641e-314 981.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47KTF@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1313680_1 761193.Runsl_1946 1.218e-305 953.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1313680_4 1122621.ATZA01000039_gene2599 1.393e-19 89.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INSB@117747|Sphingobacteriia 976|Bacteroidetes V TIGRFAM Acidobacterial duplicated orphan permease - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1313680_2 1124780.ANNU01000013_gene3784 2.879e-263 833.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47MF5@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1313680_3 1185876.BN8_00895 3.519e-146 476.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NUS@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1324490_0 1237149.C900_01185 4.287e-236 750.0 COG1629@1|root,COG1629@2|Bacteria,4PKRD@976|Bacteroidetes,47KHW@768503|Cytophagia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1324490_1 1123277.KB893206_gene3459 3.891e-134 430.0 COG2942@1|root,COG2942@2|Bacteria,4NEH7@976|Bacteroidetes,47P5Q@768503|Cytophagia 976|Bacteroidetes G N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) - - 5.1.3.11 ko:K16213 - - R01445,R10810 RC00289 ko00000,ko01000 - - - GlcNAc_2-epim DYD3_k127_1330161_4 1120968.AUBX01000012_gene2699 1.405e-06 55.0 2A263@1|root,30QGN@2|Bacteria,4NMYV@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1330161_2 485918.Cpin_2061 6.159e-69 247.0 COG2972@1|root,COG2972@2|Bacteria,4NK09@976|Bacteroidetes,1ISFG@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase ypdA_4 - - - - - - - - - - - HATPase_c_5,His_kinase DYD3_k127_1330161_1 313606.M23134_05498 3.712e-82 280.0 COG3279@1|root,COG3279@2|Bacteria,4NNIK@976|Bacteroidetes,47XDY@768503|Cytophagia 976|Bacteroidetes K LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_1330161_0 1237149.C900_05563 1.323e-96 329.0 COG1680@1|root,COG1680@2|Bacteria,4NER1@976|Bacteroidetes,47M8G@768503|Cytophagia 976|Bacteroidetes V Beta-lactamase - - 3.4.16.4 ko:K01286 - - - - ko00000,ko01000 - - - Beta-lactamase DYD3_k127_1344716_3 700598.Niako_5810 4.469e-13 69.0 COG2928@1|root,COG2928@2|Bacteria,4NR4F@976|Bacteroidetes,1IRUG@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF502) - - - - - - - - - - - - DUF502 DYD3_k127_1344716_1 700598.Niako_5811 4.98e-141 454.0 28JI8@1|root,2Z9BM@2|Bacteria,4NE5E@976|Bacteroidetes,1IPV1@117747|Sphingobacteriia 976|Bacteroidetes S S1 P1 Nuclease - - - - - - - - - - - - S1-P1_nuclease,Zn_dep_PLPC DYD3_k127_1344716_0 700598.Niako_5812 1.483e-193 608.0 COG1932@1|root,COG1932@2|Bacteria,4NE06@976|Bacteroidetes,1IP7N@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine serC GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 ko:K00831 ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230 M00020,M00124 R04173,R05085 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_5 DYD3_k127_1344716_2 700598.Niako_5813 3.62e-44 162.0 COG4198@1|root,COG4198@2|Bacteria,4NGQH@976|Bacteroidetes,1IRVU@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1015) - - - - - - - - - - - - DUF1015 DYD3_k127_1346339_1 743722.Sph21_0281 3.848e-88 294.0 COG2217@1|root,COG2217@2|Bacteria,4NERS@976|Bacteroidetes,1IQ0B@117747|Sphingobacteriia 976|Bacteroidetes P Heavy metal translocating P-type atpase - - 3.6.3.4,3.6.3.54 ko:K01533,ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - E1-E2_ATPase,HMA,Hydrolase DYD3_k127_1346339_2 1122605.KB893631_gene3930 4.517e-61 215.0 COG2207@1|root,COG2207@2|Bacteria,4NM5G@976|Bacteroidetes,1IQNG@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator, AraC family - - - - - - - - - - - - HTH_18 DYD3_k127_1346339_3 1121898.Q766_02450 5.915e-15 77.0 COG2608@1|root,COG2608@2|Bacteria,4NGKP@976|Bacteroidetes,1HYCY@117743|Flavobacteriia,2NVYK@237|Flavobacterium 976|Bacteroidetes P heavy metal - - - - - - - - - - - - HMA DYD3_k127_1346339_0 1279009.ADICEAN_01511 3.609e-178 567.0 COG3667@1|root,COG3667@2|Bacteria,4NICY@976|Bacteroidetes,47KK4@768503|Cytophagia 976|Bacteroidetes P copper resistance - - - - - - - - - - - - - DYD3_k127_1368760_2 1048983.EL17_20815 1.434e-05 48.0 COG3280@1|root,COG3280@2|Bacteria,4PM29@976|Bacteroidetes,47Y05@768503|Cytophagia 976|Bacteroidetes G Alpha amylase, catalytic domain - - 5.4.99.15 ko:K06044 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R01824,R09995 - ko00000,ko00001,ko00002,ko01000 - GH13 - Alpha-amylase DYD3_k127_1368760_0 700598.Niako_4389 6.065e-175 555.0 COG0738@1|root,COG0738@2|Bacteria,4NFHM@976|Bacteroidetes,1IRGQ@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD3_k127_1368760_1 700598.Niako_4390 5.204e-155 506.0 COG2202@1|root,COG4585@1|root,COG2202@2|Bacteria,COG4585@2|Bacteria,4NK7B@976|Bacteroidetes,1IW3P@117747|Sphingobacteriia 976|Bacteroidetes T signal transduction histidine kinase - - 2.7.13.3 ko:K07675 ko02020,map02020 M00473 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA_3,PAS_3,PAS_4,PAS_9,Response_reg DYD3_k127_1370234_5 700598.Niako_2622 1.364e-25 109.0 COG2207@1|root,COG2207@2|Bacteria 2|Bacteria K Transcriptional regulator - - - - - - - - - - - - HTH_18 DYD3_k127_1370234_2 1121288.AULL01000015_gene133 5.327e-60 213.0 COG1357@1|root,COG1357@2|Bacteria,4NQ3B@976|Bacteroidetes,1I2VH@117743|Flavobacteriia,3ZNRA@59732|Chryseobacterium 976|Bacteroidetes S Pentapeptide repeats (9 copies) - - - - - - - - - - - - Pentapeptide,Pentapeptide_4 DYD3_k127_1370234_3 761193.Runsl_0545 2.266e-47 175.0 COG2764@1|root,COG2764@2|Bacteria,4NQD7@976|Bacteroidetes,47QQP@768503|Cytophagia 976|Bacteroidetes S PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - ko:K04750 - - - - ko00000 - - - 3-dmu-9_3-mt DYD3_k127_1370234_1 1121373.KB903643_gene3557 1.501e-79 273.0 COG2207@1|root,COG2207@2|Bacteria,4NHA5@976|Bacteroidetes,47PZG@768503|Cytophagia 976|Bacteroidetes K Helix-turn-helix domain - - - - - - - - - - - - HTH_18 DYD3_k127_1370234_4 421531.IX38_09125 1.437e-29 125.0 29SY5@1|root,30E4I@2|Bacteria,4NPXY@976|Bacteroidetes,1I2NP@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1370234_0 1121904.ARBP01000015_gene214 1.714e-87 295.0 COG4976@1|root,COG4976@2|Bacteria 2|Bacteria O Methyltransferase - - - - - - - - - - - - DinB_2,FGE-sulfatase,Glycos_transf_2,HTH_20,Methyltransf_11,Methyltransf_23,Methyltransf_25,Methyltransf_31 DYD3_k127_1370234_6 1384049.CD29_15675 5.893e-22 110.0 COG1228@1|root,COG1228@2|Bacteria,1W6UE@1239|Firmicutes,4HAQJ@91061|Bacilli 91061|Bacilli Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD3_k127_1374029_1 700598.Niako_0211 1.035e-107 352.0 COG3127@1|root,COG3127@2|Bacteria,4NF16@976|Bacteroidetes,1IR5Y@117747|Sphingobacteriia 976|Bacteroidetes Q ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1374029_0 743722.Sph21_3723 3.181e-189 603.0 COG2211@1|root,COG2211@2|Bacteria,4NJ0A@976|Bacteroidetes,1IQ3U@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD3_k127_1374029_2 1122176.KB903536_gene1868 2.239e-24 112.0 COG3391@1|root,COG3391@2|Bacteria,4NSPG@976|Bacteroidetes 976|Bacteroidetes O Belongs to the peptidase S8 family - - - - - - - - - - - - - DYD3_k127_1374029_3 1121904.ARBP01000007_gene3121 1.335e-05 55.0 COG0739@1|root,COG4099@1|root,COG4733@1|root,COG4932@1|root,COG0739@2|Bacteria,COG4099@2|Bacteria,COG4733@2|Bacteria,COG4932@2|Bacteria,4NFSH@976|Bacteroidetes,47REE@768503|Cytophagia 976|Bacteroidetes M Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_2,Peptidase_S9 DYD3_k127_1378844_0 760192.Halhy_5097 9.788e-102 344.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ9X@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1378844_2 760192.Halhy_1712 3.846e-40 153.0 2CIH2@1|root,2ZTG0@2|Bacteria,4NNM2@976|Bacteroidetes,1IZRE@117747|Sphingobacteriia 976|Bacteroidetes S Putative lumazine-binding - - - - - - - - - - - - Lumazine_bd_2 DYD3_k127_1378844_1 504472.Slin_0936 5.303e-93 312.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_138730_1 700598.Niako_0903 1.622e-66 229.0 COG0196@1|root,COG0196@2|Bacteria,4NEI9@976|Bacteroidetes,1IQGU@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the ribF family ribF - 2.7.1.26,2.7.7.2 ko:K11753 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00161,R00549 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - FAD_syn,Flavokinase DYD3_k127_138730_0 700598.Niako_0904 1.93e-207 650.0 COG0150@1|root,COG0150@2|Bacteria,4NE4E@976|Bacteroidetes,1IQ5E@117747|Sphingobacteriia 976|Bacteroidetes F Phosphoribosylformylglycinamidine cyclo-ligase purM - 6.3.3.1 ko:K01933 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04208 RC01100 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C DYD3_k127_138730_2 700598.Niako_0906 4.026e-62 239.0 COG0860@1|root,COG4219@1|root,COG0860@2|Bacteria,COG4219@2|Bacteria,4NDWS@976|Bacteroidetes,1IXPP@117747|Sphingobacteriia 976|Bacteroidetes KMT BlaR1 peptidase M56 - - - - - - - - - - - - Amidase_3,Peptidase_M56,TonB_C DYD3_k127_1389763_3 700598.Niako_1611 5.29e-56 198.0 COG2912@1|root,COG2912@2|Bacteria,4NF8R@976|Bacteroidetes,1IP0V@117747|Sphingobacteriia 976|Bacteroidetes S Transglutaminase-like superfamily - - - - - - - - - - - - Transglut_core2 DYD3_k127_1389763_0 485918.Cpin_1955 0.0 1184.0 COG0550@1|root,COG1754@1|root,COG0550@2|Bacteria,COG1754@2|Bacteria,4NF9S@976|Bacteroidetes,1IPJD@117747|Sphingobacteriia 976|Bacteroidetes L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone topA - 5.99.1.2 ko:K03168 - - - - ko00000,ko01000,ko03032,ko03400 - - - Topoisom_bac,Toprim,Toprim_C_rpt DYD3_k127_1389763_1 700598.Niako_1614 7.687e-80 272.0 COG2049@1|root,COG2049@2|Bacteria,4NMNT@976|Bacteroidetes,1ISIZ@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Allophanate hydrolase subunit 1 kipI - - ko:K06351 - - - - ko00000 - - - CT_C_D DYD3_k127_1389763_4 700598.Niako_1615 2.66e-14 73.0 COG1984@1|root,COG1984@2|Bacteria,4NGIV@976|Bacteroidetes,1IQAT@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Allophanate hydrolase subunit 2 - - - ko:K06350 - - - - ko00000 - - - CT_A_B DYD3_k127_1389782_0 700598.Niako_2207 1.97e-219 687.0 COG1150@1|root,COG1150@2|Bacteria,4NF3K@976|Bacteroidetes,1IQ7C@117747|Sphingobacteriia 976|Bacteroidetes C Fe-S oxidoreductase - - - - - - - - - - - - Fer4_8,Fer4_9 DYD3_k127_1389782_5 700598.Niako_2206 7.747e-69 238.0 COG2065@1|root,COG2065@2|Bacteria,4NNRI@976|Bacteroidetes,1ISDB@117747|Sphingobacteriia 976|Bacteroidetes F Pyrimidine operon attenuation protein uracil phosphoribosyltransferase pyrR - 2.4.2.9 ko:K02825 ko00240,ko01100,map00240,map01100 - R00966 RC00063 ko00000,ko00001,ko01000,ko03000 - - - Pribosyltran DYD3_k127_1389782_1 700598.Niako_1543 2.043e-185 583.0 COG1054@1|root,COG1054@2|Bacteria,4NEG6@976|Bacteroidetes,1IT0S@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the UPF0176 family yceA - - ko:K07146 - - - - ko00000 - - - Rhodanese,Rhodanese_C DYD3_k127_1389782_2 700598.Niako_1544 3.602e-152 490.0 COG2706@1|root,COG2706@2|Bacteria,4NE87@976|Bacteroidetes,1INQI@117747|Sphingobacteriia 976|Bacteroidetes G 3-carboxymuconate cyclase - - 3.1.1.31 ko:K07404 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200 M00004,M00006,M00008 R02035 RC00537 ko00000,ko00001,ko00002,ko01000 - - - Lactonase DYD3_k127_1389782_3 649349.Lbys_0127 8.968e-80 275.0 COG0702@1|root,COG0702@2|Bacteria,4NFUX@976|Bacteroidetes,47KV7@768503|Cytophagia 976|Bacteroidetes GM SPTR NmrA family protein - - - - - - - - - - - - NAD_binding_10 DYD3_k127_1389782_4 1123277.KB893182_gene4738 6.496e-73 253.0 28PB4@1|root,2ZC42@2|Bacteria,4NJ4V@976|Bacteroidetes,47QQM@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1389782_7 1189619.pgond44_14263 1.939e-28 119.0 2DNUQ@1|root,32Z94@2|Bacteria,4NVH0@976|Bacteroidetes,1I52C@117743|Flavobacteriia,4C3UK@83612|Psychroflexus 976|Bacteroidetes S Domain of unknown function (DUF4281) - - - - - - - - - - - - DUF4281 DYD3_k127_1389782_6 700598.Niako_1547 9.55e-60 207.0 COG0152@1|root,COG0152@2|Bacteria,4NF1Z@976|Bacteroidetes,1INM8@117747|Sphingobacteriia 976|Bacteroidetes F Phosphoribosylaminoimidazolesuccinocarboxamide synthase purC GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 ko:K01923 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04591 RC00064,RC00162 ko00000,ko00001,ko00002,ko01000 - - - SAICAR_synt DYD3_k127_1394429_0 398512.JQKC01000014_gene1562 6.197e-150 519.0 COG2351@1|root,COG3409@1|root,COG2351@2|Bacteria,COG3409@2|Bacteria,1V08W@1239|Firmicutes 1239|Firmicutes M Peptidoglycan-binding domain 1 protein - - - - - - - - - - - - VRP1 DYD3_k127_1404728_2 509635.N824_17105 9.651e-07 52.0 COG4409@1|root,COG4409@2|Bacteria,4NK3N@976|Bacteroidetes,1IRMT@117747|Sphingobacteriia 976|Bacteroidetes G BNR repeat-like domain - - 3.2.1.18 ko:K01186 ko00511,ko00600,ko04142,map00511,map00600,map04142 - R04018 RC00028,RC00077 ko00000,ko00001,ko01000,ko02042 - GH33 - BNR_2 DYD3_k127_1404728_0 743722.Sph21_4586 3.943e-131 425.0 COG0329@1|root,COG0329@2|Bacteria,4NHBA@976|Bacteroidetes,1IQ1Z@117747|Sphingobacteriia 976|Bacteroidetes EM Belongs to the DapA family - - 4.1.3.3,4.2.1.41,4.3.3.7 ko:K01639,ko:K01707,ko:K01714 ko00053,ko00261,ko00300,ko00520,ko01100,ko01110,ko01120,ko01130,ko01230,map00053,map00261,map00300,map00520,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R01811,R02279,R10147 RC00159,RC00600,RC00678,RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD3_k127_1404728_1 929713.NIASO_17340 2.394e-129 429.0 COG3291@1|root,COG4409@1|root,COG3291@2|Bacteria,COG4409@2|Bacteria,4NGV7@976|Bacteroidetes 976|Bacteroidetes L PKD domain protein - - - - - - - - - - - - CarboxypepD_reg,Laminin_G_3,PKD,Peptidase_M14 DYD3_k127_1406142_0 1122605.KB893648_gene3605 1.432e-106 365.0 COG1629@1|root,COG4219@1|root,COG1629@2|Bacteria,COG4219@2|Bacteria,4NDWS@976|Bacteroidetes,1IRQZ@117747|Sphingobacteriia 976|Bacteroidetes KT BlaR1 peptidase M56 - - - - - - - - - - - - Peptidase_M56,Plug DYD3_k127_1407127_5 700598.Niako_6968 7.255e-87 297.0 COG1555@1|root,COG1555@2|Bacteria,4NK4K@976|Bacteroidetes,1IT0W@117747|Sphingobacteriia 976|Bacteroidetes L Helix-hairpin-helix motif comEA - - - - - - - - - - - HHH_3 DYD3_k127_1407127_1 700598.Niako_6969 5.837e-217 676.0 COG1960@1|root,COG1960@2|Bacteria,4NEHA@976|Bacteroidetes,1IP19@117747|Sphingobacteriia 976|Bacteroidetes I acyl-CoA dehydrogenase acdA - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD3_k127_1407127_0 700598.Niako_6972 1.85e-251 777.0 COG1219@1|root,COG1219@2|Bacteria,4NE1B@976|Bacteroidetes,1IP06@117747|Sphingobacteriia 976|Bacteroidetes O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP clpX GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - ko:K03544 ko04112,map04112 - - - ko00000,ko00001,ko03110 - - - AAA_2,ClpB_D2-small,zf-C4_ClpX DYD3_k127_1407127_4 700598.Niako_6973 1.312e-111 362.0 COG0740@1|root,COG0740@2|Bacteria,4NF77@976|Bacteroidetes,1J09A@117747|Sphingobacteriia 976|Bacteroidetes OU Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins - - 3.4.21.92 ko:K01358 ko04112,ko04212,map04112,map04212 - - - ko00000,ko00001,ko01000,ko01002 - - - CLP_protease DYD3_k127_1407127_2 700598.Niako_6974 2.706e-130 418.0 COG0740@1|root,COG0740@2|Bacteria,4NE20@976|Bacteroidetes,1IPWN@117747|Sphingobacteriia 976|Bacteroidetes OU Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins clpP - 3.4.21.92 ko:K01358 ko04112,ko04212,map04112,map04212 - - - ko00000,ko00001,ko01000,ko01002 - - - CLP_protease DYD3_k127_1407127_3 700598.Niako_5607 9.896e-113 368.0 COG0544@1|root,COG0544@2|Bacteria,4NE99@976|Bacteroidetes,1ISDW@117747|Sphingobacteriia 976|Bacteroidetes O COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) tig - - ko:K03545 - - - - ko00000 - - - Trigger_C,Trigger_N DYD3_k127_1416343_0 700598.Niako_3958 7.416e-271 845.0 COG2936@1|root,COG2936@2|Bacteria,4NFFB@976|Bacteroidetes,1IPID@117747|Sphingobacteriia 976|Bacteroidetes S PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - ko:K06978 - - - - ko00000 - - - PepX_C,Peptidase_S15 DYD3_k127_1416343_2 760192.Halhy_5846 1.526e-49 182.0 COG3631@1|root,COG3631@2|Bacteria,4NQGX@976|Bacteroidetes,1IXWE@117747|Sphingobacteriia 976|Bacteroidetes S SnoaL-like domain - - - - - - - - - - - - SnoaL_2 DYD3_k127_1416343_1 700598.Niako_3957 9.168e-170 539.0 COG1446@1|root,COG1446@2|Bacteria,4NE3D@976|Bacteroidetes,1IQZS@117747|Sphingobacteriia 976|Bacteroidetes E PFAM peptidase T2 asparaginase 2 aspG GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.26 ko:K01444,ko:K13051 ko00511,ko04142,map00511,map04142 - - - ko00000,ko00001,ko01000,ko01002 - - - Asparaginase_2 DYD3_k127_1416343_3 700598.Niako_3956 1.466e-40 151.0 COG3142@1|root,COG3142@2|Bacteria,4NINY@976|Bacteroidetes,1IRTX@117747|Sphingobacteriia 976|Bacteroidetes P Participates in the control of copper homeostasis cutC - - ko:K06201 - - - - ko00000 - - - CutC DYD3_k127_1425249_2 700598.Niako_0983 7.592e-137 441.0 COG4874@1|root,COG4874@2|Bacteria,4NFG3@976|Bacteroidetes,1IQ05@117747|Sphingobacteriia 976|Bacteroidetes S Amidinotransferase - - - - - - - - - - - - Amidinotransf DYD3_k127_1425249_0 700598.Niako_0984 2.978e-268 830.0 COG2235@1|root,COG2235@2|Bacteria,4NHKZ@976|Bacteroidetes,1IP21@117747|Sphingobacteriia 976|Bacteroidetes E Arginine deiminase - - 3.5.3.6 ko:K01478 ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130 - R00552 RC00177 ko00000,ko00001,ko01000 - - - Amidinotransf DYD3_k127_1425249_1 925409.KI911562_gene2301 6.066e-186 584.0 COG1960@1|root,COG1960@2|Bacteria,4NEHA@976|Bacteroidetes,1IPN4@117747|Sphingobacteriia 976|Bacteroidetes I acyl-CoA dehydrogenase acdA - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD3_k127_1434898_2 700598.Niako_6919 3.186e-117 379.0 COG1262@1|root,COG1262@2|Bacteria,4NEUZ@976|Bacteroidetes,1IS6V@117747|Sphingobacteriia 976|Bacteroidetes S Sulfatase-modifying factor enzyme 1 - - - - - - - - - - - - Cytochrom_NNT,FGE-sulfatase DYD3_k127_1434898_0 700598.Niako_6918 1.084e-242 754.0 COG0673@1|root,COG0673@2|Bacteria,4NF9M@976|Bacteroidetes,1IPWB@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,TAT_signal DYD3_k127_1434898_3 1237149.C900_03542 6.812e-44 165.0 COG3832@1|root,COG3832@2|Bacteria,4P3ZX@976|Bacteroidetes 976|Bacteroidetes J glyoxalase III activity - - - - - - - - - - - - AHSA1 DYD3_k127_1434898_1 700598.Niako_6917 4.016e-238 747.0 COG2972@1|root,COG4251@1|root,COG2972@2|Bacteria,COG4251@2|Bacteria,4NK9V@976|Bacteroidetes,1IW45@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,PAS_9 DYD3_k127_1435273_2 1445613.JALM01000010_gene2292 2.355e-17 94.0 COG3832@1|root,COG3832@2|Bacteria,2H75S@201174|Actinobacteria,4E225@85010|Pseudonocardiales 201174|Actinobacteria S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_1435273_0 935840.JAEQ01000001_gene2875 4.036e-41 165.0 COG3832@1|root,COG3832@2|Bacteria,1RDTP@1224|Proteobacteria,2VGIG@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_1435273_1 929556.Solca_1372 3.887e-23 100.0 COG3832@1|root,COG3832@2|Bacteria,4NST9@976|Bacteroidetes,1ISQV@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Activator of Hsp90 ATPase - - - - - - - - - - - - AHSA1 DYD3_k127_1440881_1 1122605.KB893644_gene1499 1.865e-213 676.0 COG4225@1|root,COG4225@2|Bacteria,4NFWI@976|Bacteroidetes,1IP2G@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Glycosyl Hydrolase Family 88 - - 3.2.1.172 ko:K15532 - - - - ko00000,ko01000 - GH105 - Glyco_hydro_88 DYD3_k127_1440881_0 700598.Niako_5299 1.785e-271 844.0 COG5434@1|root,COG5434@2|Bacteria,4NG4T@976|Bacteroidetes,1IPJZ@117747|Sphingobacteriia 976|Bacteroidetes G PFAM glycoside hydrolase family 28 - - - - - - - - - - - - Glyco_hydro_28,Lipase_GDSL_2,Pectate_lyase_3 DYD3_k127_1444445_3 700598.Niako_4477 9.236e-88 291.0 COG0622@1|root,COG0622@2|Bacteria,4NM4G@976|Bacteroidetes,1IRXF@117747|Sphingobacteriia 976|Bacteroidetes S Phosphoesterase - - - ko:K07095 - - - - ko00000 - - - Metallophos_2 DYD3_k127_1444445_1 700598.Niako_4478 1.794e-159 509.0 COG3325@1|root,COG3325@2|Bacteria,4NGAZ@976|Bacteroidetes,1IR7C@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 18 family - - 3.2.1.14 ko:K01183 ko00520,ko01100,map00520,map01100 - R01206,R02334 RC00467 ko00000,ko00001,ko01000 - GH18 - Glyco_hydro_18 DYD3_k127_1444445_0 700598.Niako_4481 0.0 1367.0 COG1048@1|root,COG1048@2|Bacteria,4NDZT@976|Bacteroidetes,1INUB@117747|Sphingobacteriia 976|Bacteroidetes C aconitate hydratase acnA - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C DYD3_k127_1444445_4 700598.Niako_4482 7.774e-38 142.0 COG1983@1|root,COG1983@2|Bacteria,4NUNU@976|Bacteroidetes,1IUHT@117747|Sphingobacteriia 976|Bacteroidetes KT PFAM PspC domain - - - - - - - - - - - - PspC DYD3_k127_1444445_2 700598.Niako_4483 4e-123 403.0 COG2207@1|root,COG2207@2|Bacteria,4NPJ8@976|Bacteroidetes,1IXYU@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_1445802_5 866536.Belba_1850 9.809e-15 74.0 COG2008@1|root,COG2008@2|Bacteria,4NEIH@976|Bacteroidetes,47KXF@768503|Cytophagia 976|Bacteroidetes E Threonine aldolase ltaA - 4.1.2.48 ko:K01620 ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230 - R00751,R06171 RC00312,RC00372 ko00000,ko00001,ko01000 - - - Beta_elim_lyase DYD3_k127_1445802_1 700598.Niako_1154 5.364e-106 351.0 2DNQ3@1|root,32YIN@2|Bacteria,4NUWB@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1445802_0 1123248.KB893337_gene2451 5.716e-123 403.0 COG0715@1|root,COG0715@2|Bacteria,4NH2X@976|Bacteroidetes,1IY8C@117747|Sphingobacteriia 976|Bacteroidetes P Protein of unknown function (DUF3500) - - - - - - - - - - - - DUF3500 DYD3_k127_1445802_3 1123248.KB893316_gene4597 1.385e-44 173.0 28ME7@1|root,2ZARX@2|Bacteria,4P47D@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - Hemerythrin DYD3_k127_1445802_2 1123248.KB893381_gene1107 2.481e-80 277.0 COG1917@1|root,COG1917@2|Bacteria,4NRZM@976|Bacteroidetes,1IYE8@117747|Sphingobacteriia 976|Bacteroidetes S Cupin 2, conserved barrel domain protein - - - - - - - - - - - - - DYD3_k127_1445802_4 1123248.KB893348_gene293 5.459e-29 123.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NK8Q@976|Bacteroidetes 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HTH_18,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_1450845_0 700598.Niako_0961 1.483e-137 449.0 COG5276@1|root,COG5276@2|Bacteria,4NG4W@976|Bacteroidetes,1IQNH@117747|Sphingobacteriia 976|Bacteroidetes S LVIVD repeat - - - - - - - - - - - - LVIVD DYD3_k127_1451182_0 925409.KI911562_gene2871 1.196e-130 419.0 COG1104@1|root,COG1104@2|Bacteria,4NFF6@976|Bacteroidetes,1INRF@117747|Sphingobacteriia 976|Bacteroidetes E Cysteine desulfurase iscS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 DYD3_k127_1451182_2 714943.Mucpa_3289 6.109e-33 133.0 2EQHV@1|root,33I3V@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_1451182_1 929556.Solca_2127 7.293e-38 148.0 COG2020@1|root,COG2020@2|Bacteria,4PGXX@976|Bacteroidetes,1IUNY@117747|Sphingobacteriia 976|Bacteroidetes O Phospholipid methyltransferase - - - - - - - - - - - - PEMT DYD3_k127_1451182_3 558152.IQ37_19295 4.746e-17 84.0 COG3209@1|root,COG3209@2|Bacteria,4PHY4@976|Bacteroidetes,1INC7@117743|Flavobacteriia,3ZU6M@59732|Chryseobacterium 976|Bacteroidetes M COG3209 Rhs family protein - - - - - - - - - - - - - DYD3_k127_1452561_1 700598.Niako_7294 6.235e-64 221.0 COG1286@1|root,COG2340@1|root,COG1286@2|Bacteria,COG2340@2|Bacteria,4NKR3@976|Bacteroidetes 976|Bacteroidetes S Cysteine-rich secretory protein family - - - - - - - - - - - - CAP,Colicin_V DYD3_k127_1452561_0 700598.Niako_7296 9.282e-161 512.0 COG0263@1|root,COG0263@2|Bacteria,4NH75@976|Bacteroidetes,1IQGG@117747|Sphingobacteriia 976|Bacteroidetes E glutamate 5-kinase proB - 2.7.2.11 ko:K00931 ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230 M00015 R00239 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,PUA DYD3_k127_1455072_0 700598.Niako_1029 1.935e-217 681.0 COG0308@1|root,COG0308@2|Bacteria,4NGUB@976|Bacteroidetes,1IWD6@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase family M1 domain - - - - - - - - - - - - Peptidase_M1 DYD3_k127_1455072_1 700598.Niako_1028 4.286e-173 556.0 COG2244@1|root,COG2244@2|Bacteria,4NEVQ@976|Bacteroidetes,1IP8T@117747|Sphingobacteriia 976|Bacteroidetes S Membrane protein involved in the export of O-antigen and teichoic acid - - - - - - - - - - - - Polysacc_synt,Polysacc_synt_C DYD3_k127_1455072_3 700598.Niako_1026 2.579e-29 120.0 COG4585@1|root,COG4585@2|Bacteria 2|Bacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3 DYD3_k127_1455072_2 700598.Niako_1025 1.977e-50 184.0 COG0791@1|root,COG0791@2|Bacteria,4NMT8@976|Bacteroidetes,1IRY7@117747|Sphingobacteriia 976|Bacteroidetes M Nlp p60 protein - - 3.4.17.13 ko:K13694,ko:K13695 - - - - ko00000,ko01000,ko01002,ko01011 - - - NLPC_P60 DYD3_k127_1457551_1 1270196.JCKI01000006_gene2533 3.751e-125 407.0 COG4335@1|root,COG4335@2|Bacteria,4NH5H@976|Bacteroidetes,1IR7N@117747|Sphingobacteriia 976|Bacteroidetes L DNA alkylation repair - - - - - - - - - - - - DNA_alkylation,HEAT DYD3_k127_1457551_4 700598.Niako_4760 3.254e-55 210.0 COG3656@1|root,COG5492@1|root,COG3656@2|Bacteria,COG5492@2|Bacteria,4NY36@976|Bacteroidetes 976|Bacteroidetes N TIGRFAM Fibrobacter succinogenes major paralogous domain - - - - - - - - - - - - Fib_succ_major DYD3_k127_1457551_5 1121373.KB903662_gene115 4.407e-50 183.0 COG2318@1|root,COG2318@2|Bacteria,4NREM@976|Bacteroidetes,47VNE@768503|Cytophagia 976|Bacteroidetes S DinB family - - - - - - - - - - - - DinB_2 DYD3_k127_1457551_0 760192.Halhy_5625 1.19e-148 480.0 COG0265@1|root,COG0457@1|root,COG0265@2|Bacteria,COG0457@2|Bacteria,4NWGZ@976|Bacteroidetes,1IV92@117747|Sphingobacteriia 976|Bacteroidetes O Trypsin-like peptidase domain - - - - - - - - - - - - Trypsin,Trypsin_2 DYD3_k127_1457551_10 926549.KI421517_gene562 2.334e-16 80.0 2DS9V@1|root,33F6X@2|Bacteria,4NZ2T@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1457551_3 755732.Fluta_3953 9.255e-62 220.0 COG0664@1|root,COG0664@2|Bacteria,4NN09@976|Bacteroidetes,1I99W@117743|Flavobacteriia,2PBU4@246874|Cryomorphaceae 976|Bacteroidetes T PFAM Cyclic nucleotide-binding domain - - - - - - - - - - - - cNMP_binding DYD3_k127_1457551_2 1189612.A33Q_3954 3.632e-117 384.0 COG0596@1|root,COG0596@2|Bacteria,4NFBJ@976|Bacteroidetes,47SEQ@768503|Cytophagia 976|Bacteroidetes S Alpha/beta hydrolase family - - 3.8.1.5 ko:K01563,ko:K22318 ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120 - R05284,R05367,R05368,R05369,R05370,R07669,R07670 RC01317,RC01340,RC01341,RC02013 ko00000,ko00001,ko01000 - - - Abhydrolase_1 DYD3_k127_1457551_9 251221.35211984 1.99e-20 104.0 2EA12@1|root,3346D@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF4440,SnoaL_3 DYD3_k127_1457551_7 1370122.JHXQ01000006_gene940 9.853e-22 101.0 COG2823@1|root,COG2823@2|Bacteria,1N1R4@1224|Proteobacteria,2UDII@28211|Alphaproteobacteria,4BDVK@82115|Rhizobiaceae 28211|Alphaproteobacteria S BON domain - - - - - - - - - - - - BON DYD3_k127_1457551_8 700598.Niako_0546 4.822e-21 102.0 2920B@1|root,2ZPJM@2|Bacteria,4P6S4@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1459649_0 452637.Oter_2278 0.0 1609.0 COG1073@1|root,COG3250@1|root,COG1073@2|Bacteria,COG3250@2|Bacteria,46Z55@74201|Verrucomicrobia,3K7F1@414999|Opitutae 414999|Opitutae G alpha-L-rhamnosidase - - - - - - - - - - - - Glyco_hydro_106 DYD3_k127_1469012_1 700598.Niako_5205 5.859e-181 580.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IV3C@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1469012_0 929556.Solca_0262 2.133e-270 856.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IVHM@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1469012_2 929713.NIASO_07455 3.935e-55 198.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes 976|Bacteroidetes V permease - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_148406_4 700598.Niako_4341 6.671e-32 127.0 COG1708@1|root,COG1708@2|Bacteria,4NPRU@976|Bacteroidetes,1IT5C@117747|Sphingobacteriia 976|Bacteroidetes S nucleotidyltransferase activity - - - - - - - - - - - - NTP_transf_2 DYD3_k127_148406_3 700598.Niako_4342 5.541e-80 273.0 COG2148@1|root,COG2148@2|Bacteria,4NER4@976|Bacteroidetes,1IPFF@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Bacterial sugar transferase - - - ko:K03606 ko05111,map05111 - - - ko00000,ko00001 - - - Bac_transf,CoA_binding_3 DYD3_k127_148406_2 700598.Niako_4343 5.977e-100 327.0 COG1399@1|root,COG1399@2|Bacteria,4NMQT@976|Bacteroidetes,1ISWG@117747|Sphingobacteriia 976|Bacteroidetes S acr, cog1399 - - - - - - - - - - - - DUF177 DYD3_k127_148406_5 700598.Niako_4344 1.069e-28 115.0 COG0333@1|root,COG0333@2|Bacteria,4NUXU@976|Bacteroidetes,1IU0H@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the bacterial ribosomal protein bL32 family rpmF - - ko:K02911 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_L32p DYD3_k127_148406_0 700598.Niako_4345 1.725e-165 524.0 COG0416@1|root,COG0416@2|Bacteria,4NHEX@976|Bacteroidetes,1IPMW@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA plsX - 2.3.1.15 ko:K03621 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FA_synthesis DYD3_k127_148406_1 700598.Niako_4346 1.308e-110 365.0 COG1266@1|root,COG1266@2|Bacteria,4NJAV@976|Bacteroidetes 976|Bacteroidetes S CAAX protease self-immunity - - - - - - - - - - - - Abi DYD3_k127_148508_2 700598.Niako_5708 7.558e-156 494.0 COG3959@1|root,COG3959@2|Bacteria,4NDWK@976|Bacteroidetes,1IPAD@117747|Sphingobacteriia 976|Bacteroidetes G Transketolase - - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transketolase_N DYD3_k127_148508_0 1123278.KB893567_gene2061 1.505e-260 817.0 COG0296@1|root,COG0296@2|Bacteria,4PPPS@976|Bacteroidetes 976|Bacteroidetes G Glycosyl-hydrolase 97 C-terminal, oligomerisation - - - - - - - - - - - - GH97_C,GH97_N,Glyco_hydro_97 DYD3_k127_148508_1 700598.Niako_5710 2.347e-168 537.0 COG4591@1|root,COG4591@2|Bacteria,4NG04@976|Bacteroidetes,1IPJE@117747|Sphingobacteriia 976|Bacteroidetes M ABC-type transport system involved in lipoprotein release permease component lolE_2 - - ko:K09808,ko:K09815 ko02010,map02010 M00242,M00255 - - ko00000,ko00001,ko00002,ko02000 3.A.1.125,3.A.1.15.3,3.A.1.15.5 - - FtsX,MacB_PCD DYD3_k127_148508_3 700598.Niako_5711 7.698e-51 182.0 COG0858@1|root,COG0858@2|Bacteria,4NSQJ@976|Bacteroidetes,1ISV5@117747|Sphingobacteriia 976|Bacteroidetes J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA rbfA - - ko:K02834 - - - - ko00000,ko03009 - - - RBFA DYD3_k127_1486194_0 700598.Niako_6953 0.0 1062.0 COG2217@1|root,COG2217@2|Bacteria,4NERS@976|Bacteroidetes,1IPEH@117747|Sphingobacteriia 976|Bacteroidetes P ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter - - 3.6.3.54 ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - E1-E2_ATPase,HMA,Hydrolase DYD3_k127_1486194_1 504472.Slin_0927 9.972e-111 366.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1488789_0 700598.Niako_1615 1.465e-134 432.0 COG1984@1|root,COG1984@2|Bacteria,4NGIV@976|Bacteroidetes,1IQAT@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Allophanate hydrolase subunit 2 - - - ko:K06350 - - - - ko00000 - - - CT_A_B DYD3_k127_1488789_1 760192.Halhy_3124 2.335e-74 261.0 COG1540@1|root,COG1540@2|Bacteria,4NJ86@976|Bacteroidetes,1IP2K@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the UPF0271 (lamB) family - - - ko:K07160 - - - - ko00000 - - - LamB_YcsF DYD3_k127_1488789_3 319236.JCM19294_2162 8.735e-28 124.0 2DBKE@1|root,2Z9SW@2|Bacteria,4NRWN@976|Bacteroidetes,1I012@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - Asp_protease_2 DYD3_k127_1488789_5 1166018.FAES_5125 2.771e-11 76.0 COG0793@1|root,COG0793@2|Bacteria,4NM82@976|Bacteroidetes,47PRW@768503|Cytophagia 976|Bacteroidetes M N-terminal domain of Peptidase_S41 in eukaryotic IRBP - - - - - - - - - - - - Peptidase_S41,Peptidase_S41_N,TPR_2 DYD3_k127_1488789_2 504487.JCM19302_2833 4.453e-47 187.0 COG0296@1|root,COG0296@2|Bacteria,4NJ7Z@976|Bacteroidetes,1HZ6E@117743|Flavobacteriia 976|Bacteroidetes G Glycogen recognition site of AMP-activated protein kinase - - - - - - - - - - - - AMPK1_CBM DYD3_k127_1488789_4 1189612.A33Q_0530 7.248e-22 94.0 COG1028@1|root,COG1028@2|Bacteria,4NF64@976|Bacteroidetes,47MEC@768503|Cytophagia 976|Bacteroidetes IQ PFAM Short-chain dehydrogenase reductase SDR - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD3_k127_1488869_0 1123278.KB893433_gene631 2.228e-124 403.0 28K3C@1|root,2Z9SH@2|Bacteria,4NKA2@976|Bacteroidetes,47NBG@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1488869_1 1123276.KB893245_gene1777 5.67e-96 327.0 28PTH@1|root,2ZCER@2|Bacteria,4NN6T@976|Bacteroidetes,47PQ4@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1494640_2 700598.Niako_6677 1.362e-52 188.0 COG2197@1|root,COG2197@2|Bacteria,4NJW3@976|Bacteroidetes,1IS43@117747|Sphingobacteriia 976|Bacteroidetes K COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1494640_1 1121890.AUDO01000006_gene1274 1.93e-61 216.0 COG2930@1|root,COG2930@2|Bacteria,4NP71@976|Bacteroidetes,1I20I@117743|Flavobacteriia,2NV59@237|Flavobacterium 976|Bacteroidetes S Las17-binding protein actin regulator - - - - - - - - - - - - Ysc84 DYD3_k127_1494640_0 929556.Solca_0108 4.688e-228 720.0 COG0457@1|root,COG0457@2|Bacteria,4NFMI@976|Bacteroidetes,1IV5V@117747|Sphingobacteriia 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - TPR_8 DYD3_k127_1499876_1 1346330.M472_19125 1.752e-112 376.0 COG4409@1|root,COG4409@2|Bacteria,4NFNK@976|Bacteroidetes,1IRAJ@117747|Sphingobacteriia 976|Bacteroidetes G BNR repeat-like domain - - 3.2.1.18 ko:K01186 ko00511,ko00600,ko04142,map00511,map00600,map04142 - R04018 RC00028,RC00077 ko00000,ko00001,ko01000,ko02042 - GH33 - BNR_2 DYD3_k127_1499876_0 509635.N824_17095 4.789e-216 679.0 COG2913@1|root,COG2913@2|Bacteria,4NGJI@976|Bacteroidetes,1IQYS@117747|Sphingobacteriia 976|Bacteroidetes J Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_1499876_2 509635.N824_17090 9.271e-56 196.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,4NDXS@976|Bacteroidetes,1IWMW@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1508690_0 700598.Niako_4540 5.308e-299 929.0 COG1674@1|root,COG1674@2|Bacteria,4NE86@976|Bacteroidetes,1INVI@117747|Sphingobacteriia 976|Bacteroidetes D DNA segregation ATPase FtsK SpoIIIE and related ftsK - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma DYD3_k127_1508690_2 700598.Niako_4539 6.983e-82 277.0 COG2834@1|root,COG2834@2|Bacteria,4NFGN@976|Bacteroidetes,1ISK8@117747|Sphingobacteriia 976|Bacteroidetes M outer membrane lipoprotein carrier protein LolA lolA - - ko:K03634 - - - - ko00000 - - - LolA,LolA_2 DYD3_k127_1508690_1 700598.Niako_4538 6.328e-95 316.0 COG0163@1|root,COG0163@2|Bacteria,4NIBD@976|Bacteroidetes,1INXX@117747|Sphingobacteriia 976|Bacteroidetes H Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN ubiX - 2.5.1.129 ko:K03186 ko00130,ko00627,ko00940,ko01100,ko01110,ko01120,ko01220,map00130,map00627,map00940,map01100,map01110,map01120,map01220 M00117 R01238,R02952,R03367,R04985,R04986,R11225 RC00391,RC00814,RC03392 ko00000,ko00001,ko00002,ko01000 - - - Flavoprotein DYD3_k127_1508690_3 700598.Niako_4537 1.041e-19 90.0 COG1331@1|root,COG1331@2|Bacteria,4PKPW@976|Bacteroidetes,1ITRS@117747|Sphingobacteriia 976|Bacteroidetes O COG1331 Highly conserved protein containing a thioredoxin domain - - - - - - - - - - - - Thioredox_DsbH,Thioredoxin_2,Thioredoxin_7 DYD3_k127_1520303_2 1123277.KB893172_gene569 2.572e-35 136.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NTJ@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1520303_0 865937.Gilli_2550 8.504e-208 671.0 COG0577@1|root,COG0577@2|Bacteria,4NIFV@976|Bacteroidetes,1HZ6N@117743|Flavobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1520303_1 929703.KE386491_gene1729 1.709e-172 554.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1532495_6 700598.Niako_4749 4.352e-61 228.0 COG5295@1|root,COG5295@2|Bacteria,4NJTK@976|Bacteroidetes,1IVP5@117747|Sphingobacteriia 976|Bacteroidetes UW Chaperone of endosialidase - - - - - - - - - - - - Peptidase_S74,YadA_head DYD3_k127_1532495_2 1123248.KB893316_gene4665 3.237e-121 392.0 COG2834@1|root,COG2834@2|Bacteria,4NIT5@976|Bacteroidetes,1IWMK@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane lipoprotein-sorting protein - - - - - - - - - - - - LolA_like DYD3_k127_1532495_0 468059.AUHA01000007_gene2661 1.403e-174 555.0 COG4591@1|root,COG4591@2|Bacteria,4NGJ3@976|Bacteroidetes,1IVEI@117747|Sphingobacteriia 976|Bacteroidetes M MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1532495_1 468059.AUHA01000007_gene2662 6.33e-161 516.0 COG4591@1|root,COG4591@2|Bacteria,4NHBR@976|Bacteroidetes,1IVIT@117747|Sphingobacteriia 976|Bacteroidetes M MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1532495_4 1123248.KB893316_gene4662 1.784e-113 371.0 COG1136@1|root,COG1136@2|Bacteria,4NGY1@976|Bacteroidetes,1IWQ3@117747|Sphingobacteriia 976|Bacteroidetes V ATPases associated with a variety of cellular activities - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_1532495_3 1123248.KB893316_gene4661 3.427e-120 396.0 2C2F5@1|root,32WND@2|Bacteria,4NNJR@976|Bacteroidetes,1IWDH@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1532495_5 1237149.C900_03069 5.683e-69 237.0 COG1028@1|root,COG1028@2|Bacteria,4NGQY@976|Bacteroidetes,47M76@768503|Cytophagia 976|Bacteroidetes IQ KR domain - - - - - - - - - - - - adh_short_C2 DYD3_k127_1534135_1 1123248.KB893332_gene2264 1.322e-67 233.0 COG4636@1|root,COG4636@2|Bacteria,4NFKR@976|Bacteroidetes,1IWUG@117747|Sphingobacteriia 976|Bacteroidetes S Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - - - - - - - - - - VCBS DYD3_k127_1534135_0 700598.Niako_5499 2.276e-222 692.0 COG1092@1|root,COG1092@2|Bacteria,4NG9S@976|Bacteroidetes,1INTU@117747|Sphingobacteriia 976|Bacteroidetes J PUA domain containing protein - - 2.1.1.191 ko:K06969 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_SAM DYD3_k127_1534135_2 700598.Niako_5497 1.073e-60 213.0 COG1225@1|root,COG1225@2|Bacteria,4NNHI@976|Bacteroidetes,1ISKK@117747|Sphingobacteriia 976|Bacteroidetes O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - 1.11.1.15 ko:K03564 - - - - ko00000,ko01000 - - - AhpC-TSA DYD3_k127_1543309_3 1454007.JAUG01000042_gene75 6.648e-26 109.0 COG0697@1|root,2Z7ID@2|Bacteria,4NEHB@976|Bacteroidetes,1IT8C@117747|Sphingobacteriia 976|Bacteroidetes EG L-rhamnose-proton symport protein (RhaT) rhaT - - ko:K02856 - - - - ko00000,ko02000 2.A.7.6 - - RhaT DYD3_k127_1543309_0 700598.Niako_3660 0.0 1278.0 COG3347@1|root,COG4221@1|root,COG3347@2|Bacteria,COG4221@2|Bacteria,4NEM0@976|Bacteroidetes,1IQ2J@117747|Sphingobacteriia 976|Bacteroidetes IQ rhamnulose-1-phosphate aldolase alcohol dehydrogenase - - - - - - - - - - - - Aldolase_II,adh_short,adh_short_C2 DYD3_k127_1543309_2 700598.Niako_3659 4.788e-48 173.0 COG3254@1|root,COG3254@2|Bacteria,4NSEM@976|Bacteroidetes,1ISVY@117747|Sphingobacteriia 976|Bacteroidetes G Involved in the anomeric conversion of L-rhamnose - - 5.1.3.32 ko:K03534 - - R10819 RC00563 ko00000,ko01000 - - - rhaM DYD3_k127_1543309_1 700598.Niako_3658 2.106e-121 391.0 COG4952@1|root,COG4952@2|Bacteria,4NFWW@976|Bacteroidetes,1INU9@117747|Sphingobacteriia 976|Bacteroidetes M Sugar isomerase - - 5.3.1.14 ko:K01820 ko00040,ko00051,ko01120,map00040,map00051,map01120 - R01906,R02437,R06589 RC00376,RC00434,RC00516 ko00000,ko00001,ko01000 - - - - DYD3_k127_1552534_5 172045.KS04_14450 2.262e-20 90.0 COG1574@1|root,COG1574@2|Bacteria,4NFMV@976|Bacteroidetes,1HYK7@117743|Flavobacteriia 976|Bacteroidetes S metal-dependent hydrolase with the TIM-barrel fold - - - - - - - - - - - - Amidohydro_3 DYD3_k127_1552534_4 172045.KS04_14450 4.84e-29 117.0 COG1574@1|root,COG1574@2|Bacteria,4NFMV@976|Bacteroidetes,1HYK7@117743|Flavobacteriia 976|Bacteroidetes S metal-dependent hydrolase with the TIM-barrel fold - - - - - - - - - - - - Amidohydro_3 DYD3_k127_1552534_2 700598.Niako_3167 2.573e-53 191.0 COG3238@1|root,COG3238@2|Bacteria,4NQQ3@976|Bacteroidetes,1IUC1@117747|Sphingobacteriia 976|Bacteroidetes S Putative inner membrane exporter, YdcZ - - - ko:K09936 ko02024,map02024 - - - ko00000,ko00001,ko02000 2.A.7.21 - - DMT_YdcZ DYD3_k127_1552534_0 1453498.LG45_02125 1.009e-175 561.0 28HF6@1|root,2Z7RB@2|Bacteria,4NGPM@976|Bacteroidetes,1I867@117743|Flavobacteriia,2NTB8@237|Flavobacterium 976|Bacteroidetes S Alginate export - - - - - - - - - - - - Alginate_exp DYD3_k127_1552534_1 485918.Cpin_0319 3.145e-71 243.0 COG0783@1|root,COG0783@2|Bacteria,4NNG4@976|Bacteroidetes,1ISE0@117747|Sphingobacteriia 976|Bacteroidetes P Belongs to the Dps family - - - ko:K04047 - - - - ko00000,ko03036 - - - Ferritin DYD3_k127_1552534_3 485917.Phep_3916 1.557e-37 162.0 COG1520@1|root,COG3291@1|root,COG1520@2|Bacteria,COG3291@2|Bacteria,4P0B8@976|Bacteroidetes,1IVY1@117747|Sphingobacteriia 976|Bacteroidetes M C-terminal domain of CHU protein family - - - - - - - - - - - - CHU_C,SprB DYD3_k127_1552661_0 929556.Solca_0310 2.011e-184 596.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IQ10@117747|Sphingobacteriia 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1552661_1 929556.Solca_0311 3.583e-128 425.0 COG3193@1|root,COG3193@2|Bacteria,4PKY9@976|Bacteroidetes,1J0H4@117747|Sphingobacteriia 976|Bacteroidetes S Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_1557312_0 700598.Niako_1618 2.329e-181 576.0 COG4192@1|root,COG4192@2|Bacteria,4NFY7@976|Bacteroidetes,1IQ8F@117747|Sphingobacteriia 976|Bacteroidetes T Domain of unknown function (DUF4407) - - - - - - - - - - - - DUF4407 DYD3_k127_1559572_0 714943.Mucpa_0141 1.375e-30 123.0 COG2304@1|root,COG3188@1|root,COG2304@2|Bacteria,COG3188@2|Bacteria,4NHVA@976|Bacteroidetes,1IPIV@117747|Sphingobacteriia 976|Bacteroidetes NU oxidoreductase activity - - - - - - - - - - - - PA14 DYD3_k127_1559572_1 391596.PBAL39_13377 7.462e-23 106.0 COG3209@1|root,COG4447@1|root,COG3209@2|Bacteria,COG4447@2|Bacteria,4NE5D@976|Bacteroidetes,1IP6I@117747|Sphingobacteriia 976|Bacteroidetes M YD repeat protein - - - - - - - - - - - - LRR_8,TSP_3 DYD3_k127_1567725_3 925409.KI911562_gene1816 5.224e-14 76.0 COG2250@1|root,COG2250@2|Bacteria 2|Bacteria S HEPN domain - - - - - - - - - - - - HEPN DYD3_k127_1567725_4 1358423.N180_05490 4.39e-05 46.0 COG4339@1|root,COG4339@2|Bacteria,4PKIS@976|Bacteroidetes,1J0HU@117747|Sphingobacteriia 976|Bacteroidetes S SMART Metal-dependent phosphohydrolase, HD region - - - - - - - - - - - - HD DYD3_k127_1567725_0 700598.Niako_7249 1.35e-124 408.0 COG4339@1|root,COG4339@2|Bacteria,4PKIS@976|Bacteroidetes,1J0HU@117747|Sphingobacteriia 976|Bacteroidetes S SMART Metal-dependent phosphohydrolase, HD region - - - - - - - - - - - - HD DYD3_k127_1567725_1 1150600.ADIARSV_0387 8.747e-96 322.0 COG3204@1|root,COG3204@2|Bacteria,4NNIP@976|Bacteroidetes,1IRZU@117747|Sphingobacteriia 976|Bacteroidetes S SdiA-regulated - - - - - - - - - - - - SdiA-regulated DYD3_k127_1567725_2 1550091.JROE01000004_gene1933 5.995e-65 227.0 COG1409@1|root,COG4775@1|root,COG1409@2|Bacteria,COG4775@2|Bacteria,4NF9N@976|Bacteroidetes,1IPKR@117747|Sphingobacteriia 976|Bacteroidetes M metallophosphoesterase - - - - - - - - - - - - Bac_surface_Ag,Metallophos DYD3_k127_1567850_7 700598.Niako_6330 1.214e-111 366.0 COG1030@1|root,COG1030@2|Bacteria,4NGGV@976|Bacteroidetes,1IQUS@117747|Sphingobacteriia 976|Bacteroidetes O Membrane-bound serine protease (ClpP class) - - - ko:K07403 - - - - ko00000 - - - CLP_protease,NfeD,SDH_sah DYD3_k127_1567850_5 700598.Niako_6329 1.533e-130 419.0 COG0330@1|root,COG0330@2|Bacteria,4NFPK@976|Bacteroidetes,1IRDU@117747|Sphingobacteriia 976|Bacteroidetes O PFAM SPFH domain Band 7 family - - - - - - - - - - - - Band_7 DYD3_k127_1567850_0 700598.Niako_6328 0.0 1504.0 COG3408@1|root,COG3408@2|Bacteria,4PKJG@976|Bacteroidetes,1IQX7@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Mannosyl oligosaccharide glucosidase - - - - - - - - - - - - Glyco_hydro_63 DYD3_k127_1567850_11 700598.Niako_6326 2.99e-56 202.0 COG3153@1|root,COG3153@2|Bacteria,4NP1G@976|Bacteroidetes,1ISPI@117747|Sphingobacteriia 976|Bacteroidetes S Acetyltransferase, gnat family - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_7,Acetyltransf_9,Zn_ribbon_2 DYD3_k127_1567850_10 1348583.ATLH01000029_gene1189 2.898e-69 243.0 COG0491@1|root,COG0491@2|Bacteria,4NPPW@976|Bacteroidetes,1I1N1@117743|Flavobacteriia 976|Bacteroidetes S Metallo-beta-lactamase superfamily ccrA - 3.5.2.6 ko:K17837 ko01501,map01501 - R06363 RC01499 ko00000,ko00001,ko01000 - - - Lactamase_B DYD3_k127_1567850_6 700598.Niako_6323 4.318e-128 417.0 COG0388@1|root,COG0388@2|Bacteria,4NE37@976|Bacteroidetes,1INZJ@117747|Sphingobacteriia 976|Bacteroidetes S Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase yafV - 3.5.1.3 ko:K13566 ko00250,map00250 - R00269,R00348 RC00010 ko00000,ko00001,ko01000 - - - CN_hydrolase DYD3_k127_1567850_8 925409.KI911562_gene825 1.443e-108 362.0 COG1820@1|root,COG1820@2|Bacteria,4NJ35@976|Bacteroidetes,1INWT@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the metallo-dependent hydrolases superfamily. NagA family - - 3.5.1.25 ko:K01443 ko00520,ko01130,map00520,map01130 - R02059 RC00166,RC00300 ko00000,ko00001,ko01000 - - - Amidohydro_1 DYD3_k127_1567850_1 700598.Niako_6321 4.804e-210 663.0 COG0793@1|root,COG0793@2|Bacteria,4NGGJ@976|Bacteroidetes,1ITFP@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_1567850_2 700598.Niako_6320 3.13e-199 623.0 COG0611@1|root,COG0611@2|Bacteria,4NDUT@976|Bacteroidetes,1IQ84@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 thiL - 2.7.4.16 ko:K00946 ko00730,ko01100,map00730,map01100 M00127 R00617 RC00002 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C DYD3_k127_1567850_4 700598.Niako_6319 1.524e-140 449.0 COG0483@1|root,COG0483@2|Bacteria,4NI6D@976|Bacteroidetes,1IQ46@117747|Sphingobacteriia 976|Bacteroidetes G Inositol monophosphatase - - 3.1.3.25 ko:K01092 ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070 M00131 R01185,R01186,R01187 RC00078 ko00000,ko00001,ko00002,ko01000 - - - Inositol_P DYD3_k127_1567850_9 1408473.JHXO01000006_gene1149 3.286e-101 342.0 COG1216@1|root,COG1216@2|Bacteria,4NFW5@976|Bacteroidetes,2FQ14@200643|Bacteroidia 976|Bacteroidetes S Glycosyltransferase, group 2 family protein wbbL - - ko:K07011 - - - - ko00000 - - - CoA_binding_3,Glyco_tranf_2_3,Glycos_transf_2 DYD3_k127_1567850_3 700598.Niako_6315 4.468e-183 573.0 COG0318@1|root,COG0318@2|Bacteria,4PKQG@976|Bacteroidetes,1IVSR@117747|Sphingobacteriia 976|Bacteroidetes IQ GH3 auxin-responsive promoter - - - - - - - - - - - - GH3 DYD3_k127_1568556_2 700598.Niako_5460 6.154e-65 224.0 COG0343@1|root,COG0343@2|Bacteria,4NE15@976|Bacteroidetes,1IVPN@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) tgt - 2.4.2.29 ko:K00773 - - R03789,R10209 RC00063 ko00000,ko01000,ko03016 - - - TGT DYD3_k127_1568556_0 700598.Niako_5461 1.638e-179 568.0 COG1215@1|root,COG1215@2|Bacteria,4NESG@976|Bacteroidetes,1IQGQ@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glyco_tranf_2_3,Glycos_transf_2 DYD3_k127_1568556_1 45351.EDO25669 3.985e-69 241.0 COG0217@1|root,KOG2972@2759|Eukaryota,3AV5S@33154|Opisthokonta,3C3FS@33208|Metazoa 33208|Metazoa K rRNA small subunit methyltransferase G - - - - - - - - - - - - GidB DYD3_k127_1568556_3 700598.Niako_5463 1.381e-46 170.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,1ITQW@117747|Sphingobacteriia 976|Bacteroidetes T COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_157305_0 700598.Niako_0577 8.696e-292 899.0 COG1541@1|root,COG1541@2|Bacteria,4PKJA@976|Bacteroidetes,1IP9C@117747|Sphingobacteriia 976|Bacteroidetes H GH3 auxin-responsive promoter - - - - - - - - - - - - GH3 DYD3_k127_157305_1 700598.Niako_0578 1.739e-223 695.0 COG0743@1|root,COG0743@2|Bacteria,4NG0S@976|Bacteroidetes,1IPQJ@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) dxr GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 ko:K00099 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05688 RC01452 ko00000,ko00001,ko00002,ko01000 - - - DXPR_C,DXP_redisom_C,DXP_reductoisom DYD3_k127_157305_2 700598.Niako_0579 3.015e-09 58.0 COG0750@1|root,COG0750@2|Bacteria,4NEAR@976|Bacteroidetes,1INRC@117747|Sphingobacteriia 976|Bacteroidetes M zinc metalloprotease rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 DYD3_k127_1578758_2 1296416.JACB01000010_gene1521 1.605e-30 137.0 COG2834@1|root,COG3391@1|root,COG2834@2|Bacteria,COG3391@2|Bacteria,4NNEF@976|Bacteroidetes,1I9S0@117743|Flavobacteriia 976|Bacteroidetes M Cadherin domain - - - - - - - - - - - - Cadherin,NHL DYD3_k127_1578758_0 1048983.EL17_01260 1.491e-82 282.0 2DBB1@1|root,2Z854@2|Bacteria,4NNZD@976|Bacteroidetes,47Q80@768503|Cytophagia 976|Bacteroidetes S Domain of Unknown Function (DUF1206) - - - - - - - - - - - - DUF1206 DYD3_k127_1578758_1 1185876.BN8_01714 2.639e-74 252.0 COG1387@1|root,COG1387@2|Bacteria,4NMBC@976|Bacteroidetes,47PG3@768503|Cytophagia 976|Bacteroidetes E Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_1580845_0 700598.Niako_0573 0.0 1551.0 COG1038@1|root,COG1038@2|Bacteria,4NFHU@976|Bacteroidetes,1IQ37@117747|Sphingobacteriia 976|Bacteroidetes C Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second cfiB - 6.4.1.1 ko:K01958 ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230 M00173 R00344 RC00040,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,HMGL-like,PYC_OADA DYD3_k127_1580845_1 1150600.ADIARSV_3424 5.55e-25 109.0 2BTEI@1|root,32NKR@2|Bacteria,4P9PN@976|Bacteroidetes,1IZXK@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1583075_0 1185876.BN8_02240 1.908e-93 323.0 COG0671@1|root,COG0671@2|Bacteria,4NF9W@976|Bacteroidetes,47M2K@768503|Cytophagia 976|Bacteroidetes I PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - - - - - - - - - - PAP2 DYD3_k127_1583075_2 714943.Mucpa_1801 3.364e-85 291.0 COG2207@1|root,COG2207@2|Bacteria,4NGWC@976|Bacteroidetes,1ITYF@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_1583075_3 196490.AUEZ01000073_gene7560 2.554e-48 182.0 COG0500@1|root,COG2226@2|Bacteria,1Q7A7@1224|Proteobacteria,2VDEP@28211|Alphaproteobacteria,3K3EV@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_11 DYD3_k127_1583075_1 700598.Niako_1032 1.697e-88 302.0 COG3266@1|root,COG3266@2|Bacteria,4NKYH@976|Bacteroidetes 976|Bacteroidetes S domain, Protein - - - - - - - - - - - - - DYD3_k127_1583075_4 1454007.JAUG01000082_gene4556 3.261e-16 79.0 COG0500@1|root,COG2226@2|Bacteria,4NIN6@976|Bacteroidetes,1IYEB@117747|Sphingobacteriia 976|Bacteroidetes Q Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - - - - - - - - - - Methyltransf_25,Ubie_methyltran DYD3_k127_1587111_1 63737.Npun_R3721 3.76e-79 273.0 COG0277@1|root,COG0277@2|Bacteria 2|Bacteria C FAD linked oxidase domain protein yitY - - - - - - - - - - - ALO,FAD_binding_4,Methyltransf_11 DYD3_k127_1587111_2 1229487.AMYW01000004_gene2084 3.893e-64 226.0 COG2860@1|root,COG2860@2|Bacteria,4NEXS@976|Bacteroidetes,1HX20@117743|Flavobacteriia,2NUKN@237|Flavobacterium 976|Bacteroidetes S membrane - - - - - - - - - - - - UPF0126 DYD3_k127_1587111_0 700598.Niako_4615 5.891e-98 327.0 2CAD1@1|root,2Z81J@2|Bacteria,4NJ4C@976|Bacteroidetes,1IXXS@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1587111_3 1379698.RBG1_1C00001G1079 6.614e-64 229.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - Big_3_5,Calx-beta,FG-GAP,VCBS DYD3_k127_1611710_1 1122179.KB890452_gene4653 8.536e-57 204.0 COG2197@1|root,COG2197@2|Bacteria,4NF5P@976|Bacteroidetes,1IT9D@117747|Sphingobacteriia 976|Bacteroidetes T helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1611710_0 1123037.AUDE01000023_gene2810 7.768e-94 339.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NHSC@976|Bacteroidetes,1HXPR@117743|Flavobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,SpoIIE,Y_Y_Y DYD3_k127_1614574_1 1123277.KB893182_gene4738 1.335e-84 288.0 28PB4@1|root,2ZC42@2|Bacteria,4NJ4V@976|Bacteroidetes,47QQM@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1614574_4 204669.Acid345_3876 3.458e-27 115.0 COG5580@1|root,COG5580@2|Bacteria,3Y90D@57723|Acidobacteria,2JNT0@204432|Acidobacteriia 204432|Acidobacteriia O Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_1614574_3 760192.Halhy_2301 1.31e-66 236.0 COG1595@1|root,COG1595@2|Bacteria,4NK4D@976|Bacteroidetes 976|Bacteroidetes K COGs COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2 DYD3_k127_1614574_0 700598.Niako_1431 3.456e-173 559.0 COG0793@1|root,COG0793@2|Bacteria,4NEK8@976|Bacteroidetes,1IPC4@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase, S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_1614574_2 485918.Cpin_4394 7.536e-81 284.0 COG3291@1|root,COG3291@2|Bacteria,4NPDM@976|Bacteroidetes,1IW61@117747|Sphingobacteriia 976|Bacteroidetes G PFAM PKD domain - - - - - - - - - - - - CHU_C,PKD DYD3_k127_1646739_1 700598.Niako_5546 2.363e-81 274.0 COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1IT68@117747|Sphingobacteriia 976|Bacteroidetes T PFAM histidine kinase - - - - - - - - - - - - HATPase_c,HATPase_c_2,HisKA_2,TPR_10,TPR_12,TPR_8 DYD3_k127_1646739_0 700598.Niako_5547 8.778e-104 343.0 COG3279@1|root,COG3279@2|Bacteria,4NKXC@976|Bacteroidetes,1ITHP@117747|Sphingobacteriia 976|Bacteroidetes KT Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_1649652_0 929703.KE386491_gene1730 8.188e-191 608.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47MYR@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1659421_3 1123248.KB893314_gene3466 1.898e-46 168.0 COG0577@1|root,COG0577@2|Bacteria,4P243@976|Bacteroidetes,1IVV7@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1659421_0 1122621.ATZA01000002_gene1701 1.534e-243 762.0 COG2234@1|root,COG2234@2|Bacteria,4NE66@976|Bacteroidetes,1IUY6@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 DYD3_k127_1659421_1 929562.Emtol_2268 1.802e-159 507.0 COG0329@1|root,COG0329@2|Bacteria,4NHBA@976|Bacteroidetes,47KI9@768503|Cytophagia 976|Bacteroidetes EM Belongs to the DapA family nanA - 4.1.3.3,4.2.1.41,4.3.3.7 ko:K01639,ko:K01707,ko:K01714 ko00053,ko00261,ko00300,ko00520,ko01100,ko01110,ko01120,ko01130,ko01230,map00053,map00261,map00300,map00520,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R01811,R02279,R10147 RC00159,RC00600,RC00678,RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD3_k127_1659421_2 929562.Emtol_2267 5.187e-51 181.0 COG4948@1|root,COG4948@2|Bacteria,4NFHR@976|Bacteroidetes,47KJ8@768503|Cytophagia 976|Bacteroidetes M PFAM Mandelate racemase muconate lactonizing - - 4.2.1.40 ko:K01706 ko00053,ko01100,map00053,map01100 - R02752,R08056 RC00543 ko00000,ko00001,ko01000 - - - MR_MLE_C,MR_MLE_N DYD3_k127_1671081_4 700598.Niako_2164 3.651e-50 191.0 COG3119@1|root,COG3119@2|Bacteria 2|Bacteria P arylsulfatase activity - - - - - - - - - - - - Bac_rhamnosid6H,Bac_rhamnosid_C,Sulfatase DYD3_k127_1671081_5 1122605.KB893625_gene2315 2.481e-43 177.0 COG3119@1|root,COG3119@2|Bacteria 2|Bacteria P arylsulfatase activity - - - - - - - - - - - - Bac_rhamnosid6H,Bac_rhamnosid_C,Sulfatase DYD3_k127_1671081_3 700598.Niako_3680 2.416e-66 242.0 COG1305@1|root,COG1305@2|Bacteria 2|Bacteria E Transglutaminase-like superfamily - - - - - - - - - - - - Transglut_core DYD3_k127_1671081_0 700598.Niako_3683 2.072e-189 593.0 COG0502@1|root,COG0502@2|Bacteria,4NEMA@976|Bacteroidetes,1IPD7@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism bioB - 2.8.1.6 ko:K01012 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R01078 RC00441 ko00000,ko00001,ko00002,ko01000 - - - BATS,Radical_SAM DYD3_k127_1671081_2 700598.Niako_3684 1.638e-69 237.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - ko:K07689 ko02020,ko02025,ko02026,ko05111,map02020,map02025,map02026,map05111 M00475 - - ko00000,ko00001,ko00002,ko02022 - - - Biotin_lipoyl_2,HlyD_3,HlyD_D23,Response_reg DYD3_k127_1671081_1 700598.Niako_3685 2.453e-154 494.0 COG2067@1|root,COG2067@2|Bacteria,4NHNC@976|Bacteroidetes,1IXQD@117747|Sphingobacteriia 976|Bacteroidetes I penicillin-binding protein porQ - - - - - - - - - - - PorP_SprF DYD3_k127_1685032_0 1185876.BN8_04391 2.111e-163 529.0 COG0457@1|root,COG0457@2|Bacteria,4NGS0@976|Bacteroidetes,47MD8@768503|Cytophagia 976|Bacteroidetes K Tetratricopeptide repeat - - - - - - - - - - - - GerE,TPR_12,TPR_7,TPR_8 DYD3_k127_1686370_1 509635.N824_05550 2.767e-26 108.0 COG1524@1|root,COG1524@2|Bacteria,4NE94@976|Bacteroidetes,1IQXH@117747|Sphingobacteriia 976|Bacteroidetes S PFAM type I phosphodiesterase nucleotide pyrophosphatase pafA - - - - - - - - - - - Phosphodiest DYD3_k127_1686370_0 700598.Niako_4533 2.583e-218 687.0 COG0612@1|root,COG0612@2|Bacteria,4NFY0@976|Bacteroidetes,1IP4P@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase M16 - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C DYD3_k127_1686726_2 700598.Niako_1526 2.668e-69 235.0 COG0297@1|root,COG0297@2|Bacteria,4NFP8@976|Bacteroidetes,1IPR7@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Starch synthase, catalytic domain glgA - 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5 DYD3_k127_1686726_1 700598.Niako_1525 2.223e-99 332.0 COG0414@1|root,COG0414@2|Bacteria,4NFT9@976|Bacteroidetes,1IQ34@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate panC GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 ko:K01918 ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110 M00119 R02473 RC00096,RC00141 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_ligase DYD3_k127_1686726_3 700598.Niako_1524 8.397e-57 199.0 COG0853@1|root,COG0853@2|Bacteria,4NQ42@976|Bacteroidetes,1IT2H@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine panD - 4.1.1.11 ko:K01579 ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110 M00119 R00489 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Asp_decarbox DYD3_k127_1686726_0 700598.Niako_1523 1.571e-123 405.0 COG0392@1|root,COG0392@2|Bacteria,4NGPD@976|Bacteroidetes,1ISJK@117747|Sphingobacteriia 976|Bacteroidetes S Lysylphosphatidylglycerol synthase TM region - - - ko:K07027 - - - - ko00000,ko02000 4.D.2 - - LPG_synthase_TM DYD3_k127_1686726_4 700598.Niako_1522 8.776e-42 156.0 COG0615@1|root,COG0615@2|Bacteria,4NNKK@976|Bacteroidetes,1ISYY@117747|Sphingobacteriia 976|Bacteroidetes IM Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - 2.7.1.167,2.7.7.70 ko:K03272 ko00540,ko01100,map00540,map01100 M00064 R05644,R05646 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_like DYD3_k127_1696008_0 700598.Niako_6088 4.884e-220 689.0 COG0436@1|root,COG0436@2|Bacteria,4NFPR@976|Bacteroidetes,1IPI0@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Aminotransferase class I and II - - 2.6.1.1 ko:K00812 ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00355,R00694,R00734,R00896,R02433,R02619,R05052 RC00006 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_1696008_3 1415780.JPOG01000001_gene1457 1.842e-76 267.0 COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,1RMFE@1236|Gammaproteobacteria,1X43J@135614|Xanthomonadales 135614|Xanthomonadales I Alpha beta hydrolase cpo - 1.11.1.10 ko:K00433 - - - - ko00000,ko01000 - - - Abhydrolase_1 DYD3_k127_1696008_5 1469557.JSWF01000015_gene2720 1.021e-39 162.0 COG1520@1|root,COG1520@2|Bacteria,4NZRS@976|Bacteroidetes 976|Bacteroidetes S Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - - - - - - - - - - - DYD3_k127_1696008_2 700598.Niako_4283 8.057e-110 374.0 COG5295@1|root,COG5295@2|Bacteria,4NJTK@976|Bacteroidetes,1IVP5@117747|Sphingobacteriia 976|Bacteroidetes UW Chaperone of endosialidase - - - - - - - - - - - - Peptidase_S74,YadA_head DYD3_k127_1696008_1 1121889.AUDM01000002_gene337 4.847e-118 409.0 COG5295@1|root,COG5295@2|Bacteria,4NJTK@976|Bacteroidetes,1HZNB@117743|Flavobacteriia,2NVE3@237|Flavobacterium 976|Bacteroidetes UW Chaperone of endosialidase - - - - - - - - - - - - Peptidase_S74,YadA_head DYD3_k127_1696008_6 1267211.KI669560_gene348 7.504e-39 151.0 COG4447@1|root,COG4447@2|Bacteria,4NESU@976|Bacteroidetes,1IVNR@117747|Sphingobacteriia 976|Bacteroidetes S Sortilin, neurotensin receptor 3, - - - - - - - - - - - - Sortilin-Vps10 DYD3_k127_1701438_2 468059.AUHA01000002_gene1003 1.829e-95 314.0 COG3193@1|root,COG3193@2|Bacteria,4PKD2@976|Bacteroidetes,1J0II@117747|Sphingobacteriia 976|Bacteroidetes S SusD family - - - - - - - - - - - - SusD-like_3,SusD_RagB DYD3_k127_1701438_0 468059.AUHA01000002_gene1002 9.888e-194 609.0 COG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1INMT@117747|Sphingobacteriia 976|Bacteroidetes HP TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1701438_1 468059.AUHA01000002_gene1002 1.026e-141 453.0 COG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1INMT@117747|Sphingobacteriia 976|Bacteroidetes HP TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1705349_4 945713.IALB_2311 1.245e-06 57.0 COG1409@1|root,COG2382@1|root,COG2885@1|root,COG1409@2|Bacteria,COG2382@2|Bacteria,COG2885@2|Bacteria 2|Bacteria M chlorophyll binding - - 3.1.4.53,5.2.1.8 ko:K03651,ko:K03771,ko:K07017 ko00230,ko02025,map00230,map02025 - R00191 RC00296 ko00000,ko00001,ko01000,ko03110 - - - DUF3575,Esterase,Metallophos,OmpA,PD40,Rotamase,Rotamase_3 DYD3_k127_1705349_1 509635.N824_26440 6.148e-150 480.0 COG2267@1|root,COG2267@2|Bacteria,4PN25@976|Bacteroidetes 976|Bacteroidetes I PFAM Alpha Beta hydrolase - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_1705349_3 700598.Niako_6112 9.094e-46 167.0 COG2146@1|root,COG2146@2|Bacteria,4NV9E@976|Bacteroidetes,1ITVU@117747|Sphingobacteriia 976|Bacteroidetes P Rieske (2Fe-2S) domain - - - ko:K05710 ko00360,ko01120,ko01220,map00360,map01120,map01220 M00545 R06782,R06783 RC00098 br01602,ko00000,ko00001,ko00002 - - - Rieske,Rieske_2 DYD3_k127_1705349_0 700598.Niako_6111 1.831e-211 663.0 COG2262@1|root,COG2262@2|Bacteria,4NF0P@976|Bacteroidetes,1IR5V@117747|Sphingobacteriia 976|Bacteroidetes S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis hflX - - ko:K03665 - - - - ko00000,ko03009 - - - GTP-bdg_M,GTP-bdg_N,MMR_HSR1 DYD3_k127_1705349_2 700598.Niako_6110 2.966e-82 278.0 2A7CX@1|root,334RT@2|Bacteria,4NVQR@976|Bacteroidetes 976|Bacteroidetes S Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl_2 DYD3_k127_1709360_0 1346330.M472_08740 2.081e-118 413.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IQPS@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_1709360_1 700598.Niako_4101 3.54e-88 305.0 COG3712@1|root,COG3712@2|Bacteria,4NS1Z@976|Bacteroidetes 976|Bacteroidetes PT COGs COG3712 Fe2 -dicitrate sensor membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_1709360_2 485917.Phep_0954 6.813e-47 177.0 COG1595@1|root,COG1595@2|Bacteria,4NSXH@976|Bacteroidetes,1ITZ1@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_1711197_3 700598.Niako_5642 2.491e-08 55.0 COG0236@1|root,COG0236@2|Bacteria,4NS6C@976|Bacteroidetes,1ITA3@117747|Sphingobacteriia 976|Bacteroidetes IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis acpP - - ko:K02078 - - - - ko00000,ko00001 - - - PP-binding DYD3_k127_1711197_1 700598.Niako_5643 4.62e-79 265.0 COG0454@1|root,COG0456@2|Bacteria,4NWTW@976|Bacteroidetes,1IZJT@117747|Sphingobacteriia 976|Bacteroidetes K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_10 DYD3_k127_1711197_0 385682.AFSL01000082_gene1174 0.0 1076.0 COG1197@1|root,COG1197@2|Bacteria,4NEPA@976|Bacteroidetes,2FP1Q@200643|Bacteroidia,3XIPX@558415|Marinilabiliaceae 976|Bacteroidetes L TRCF mfd - - ko:K03723 ko03420,map03420 - - - ko00000,ko00001,ko01000,ko03400 - - - CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF DYD3_k127_1711197_2 313606.M23134_01058 2.779e-38 154.0 COG1404@1|root,COG4447@1|root,COG1404@2|Bacteria,COG4447@2|Bacteria,4NEJ8@976|Bacteroidetes,47N4Z@768503|Cytophagia 976|Bacteroidetes DZ Pkd domain containing protein - - - - - - - - - - - - MAM,TIG,fn3 DYD3_k127_1732923_0 1123276.KB893245_gene1427 6.383e-69 247.0 COG1858@1|root,COG1858@2|Bacteria 2|Bacteria C electron transfer activity - - - - - - - - - - - - DHOR DYD3_k127_1732923_1 1123248.KB893327_gene795 4.164e-61 214.0 COG2197@1|root,COG2197@2|Bacteria,4NNEU@976|Bacteroidetes,1J05I@117747|Sphingobacteriia 976|Bacteroidetes K response regulator, receiver - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1738491_2 468059.AUHA01000003_gene1725 3.535e-37 140.0 COG1028@1|root,COG1028@2|Bacteria,4NGQY@976|Bacteroidetes,1IRGR@117747|Sphingobacteriia 976|Bacteroidetes IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 DYD3_k127_1738491_0 700598.Niako_1894 3.385e-276 857.0 COG0058@1|root,COG0058@2|Bacteria,4NGR1@976|Bacteroidetes,1IPKK@117747|Sphingobacteriia 976|Bacteroidetes G COGs COG0058 Glucan phosphorylase glgP - 2.4.1.1,2.4.1.8 ko:K00688,ko:K00691 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R01555,R02111 RC00049 ko00000,ko00001,ko01000 - GH65,GT35 - DUF3417,Phosphorylase DYD3_k127_1738491_3 700598.Niako_1872 2.232e-26 110.0 COG3708@1|root,COG3708@2|Bacteria,4NXU8@976|Bacteroidetes 976|Bacteroidetes K Putative zinc ribbon domain - - - - - - - - - - - - Zn_ribbon_2 DYD3_k127_1738491_1 700598.Niako_1883 2.53e-172 545.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,4NEHE@976|Bacteroidetes,1INV9@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the PEP-utilizing enzyme family ppsA - 2.7.9.2 ko:K01007 ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200 M00173,M00374 R00199 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N DYD3_k127_1742344_1 700598.Niako_0170 2.453e-143 468.0 COG1555@1|root,COG1555@2|Bacteria,4NE88@976|Bacteroidetes,1INMF@117747|Sphingobacteriia 976|Bacteroidetes L Psort location OuterMembrane, score - - - - - - - - - - - - HHH_3 DYD3_k127_1742344_3 1237149.C900_00211 2.224e-28 116.0 COG4198@1|root,COG4198@2|Bacteria,4NFUK@976|Bacteroidetes,47MZ4@768503|Cytophagia 976|Bacteroidetes S Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_1742344_0 926556.Echvi_0789 1.088e-282 902.0 COG1629@1|root,COG4774@1|root,COG1629@2|Bacteria,COG4774@2|Bacteria,4PKAS@976|Bacteroidetes,47Y5U@768503|Cytophagia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_1742344_2 926556.Echvi_0788 1.444e-140 461.0 COG4198@1|root,COG4198@2|Bacteria,4NFUK@976|Bacteroidetes,47MZ4@768503|Cytophagia 976|Bacteroidetes S Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_1759175_1 700598.Niako_4724 5.308e-107 348.0 COG0283@1|root,COG0283@2|Bacteria,4NEMB@976|Bacteroidetes,1IRY5@117747|Sphingobacteriia 976|Bacteroidetes F Belongs to the cytidylate kinase family. Type 1 subfamily cmk GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 ko:K00945 ko00240,ko01100,map00240,map01100 M00052 R00158,R00512,R01665 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Cytidylate_kin DYD3_k127_1759175_0 700598.Niako_4725 5.455e-314 964.0 COG0542@1|root,COG0542@2|Bacteria,4NE1J@976|Bacteroidetes,1IPYI@117747|Sphingobacteriia 976|Bacteroidetes O with chaperone activity ATP-binding subunit clpC - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N,UVR DYD3_k127_1760629_5 700598.Niako_5529 1.568e-19 89.0 COG0500@1|root,COG2226@2|Bacteria,4NM9E@976|Bacteroidetes,1ISSP@117747|Sphingobacteriia 976|Bacteroidetes Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_23,Methyltransf_25,Methyltransf_31 DYD3_k127_1760629_0 700598.Niako_5530 2.842e-201 631.0 COG0644@1|root,COG0644@2|Bacteria,4NE67@976|Bacteroidetes,1IQN7@117747|Sphingobacteriia 976|Bacteroidetes C PFAM FAD dependent oxidoreductase - - - - - - - - - - - - FAD_binding_2,FAD_binding_3,Lycopene_cycl,SE,Trp_halogenase DYD3_k127_1760629_1 700598.Niako_5531 7.22e-162 523.0 COG2885@1|root,COG2885@2|Bacteria 2|Bacteria M chlorophyll binding - - - - - - - - - - - - - DYD3_k127_1760629_3 700598.Niako_5534 3.49e-82 275.0 COG1510@1|root,COG1510@2|Bacteria,4NQPD@976|Bacteroidetes,1ISGU@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the GbsR family - - - - - - - - - - - - HTH_5,MarR_2,TrmB DYD3_k127_1760629_4 700598.Niako_5535 3.308e-80 276.0 COG3011@1|root,COG3011@2|Bacteria,4NN81@976|Bacteroidetes,1ITQT@117747|Sphingobacteriia 976|Bacteroidetes S Protein conserved in bacteria - - - - - - - - - - - - DUF393 DYD3_k127_1760629_2 700598.Niako_5536 2.488e-91 306.0 COG1090@1|root,COG1090@2|Bacteria,4NH8J@976|Bacteroidetes,1IPH3@117747|Sphingobacteriia 976|Bacteroidetes S NAD dependent epimerase dehydratase - - - ko:K07071 - - - - ko00000 - - - DUF1731,Epimerase DYD3_k127_1763071_0 1453498.LG45_09625 6.099e-131 425.0 COG3781@1|root,COG3781@2|Bacteria,4NGJ0@976|Bacteroidetes,1HYG9@117743|Flavobacteriia,2NVTB@237|Flavobacterium 976|Bacteroidetes S Bestrophin, RFP-TM, chloride channel - - - ko:K08994 - - - - ko00000,ko02000 1.A.46.2 - - Bestrophin DYD3_k127_1763071_1 700598.Niako_0970 1.361e-122 403.0 COG1680@1|root,COG1680@2|Bacteria,4NJ9H@976|Bacteroidetes,1ISUH@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase DYD3_k127_1768252_3 1121481.AUAS01000012_gene346 6.483e-49 177.0 COG2203@1|root,COG2203@2|Bacteria,4NE84@976|Bacteroidetes,47K2E@768503|Cytophagia 976|Bacteroidetes T Gaf domain - - - - - - - - - - - - - DYD3_k127_1768252_1 471854.Dfer_3275 3.714e-130 424.0 COG2114@1|root,COG2114@2|Bacteria,4NKWT@976|Bacteroidetes,47XVT@768503|Cytophagia 976|Bacteroidetes T Protein of unknown function (DUF2652) - - - - - - - - - - - - DUF2652 DYD3_k127_1768252_0 509635.N824_00305 2.745e-139 451.0 COG1028@1|root,COG1028@2|Bacteria,4NK8E@976|Bacteroidetes,1IUU6@117747|Sphingobacteriia 976|Bacteroidetes IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short DYD3_k127_1768252_2 525257.HMPREF0204_14659 1.607e-111 365.0 COG2207@1|root,COG2207@2|Bacteria,4NGWC@976|Bacteroidetes,1I3RY@117743|Flavobacteriia,3ZQUQ@59732|Chryseobacterium 976|Bacteroidetes K AraC family transcriptional regulator - - - - - - - - - - - - HTH_18 DYD3_k127_1770523_1 1283300.ATXB01000001_gene1463 1.554e-28 120.0 2BXI0@1|root,2Z9A2@2|Bacteria,1R9XN@1224|Proteobacteria,1S39A@1236|Gammaproteobacteria,1XGER@135618|Methylococcales 135618|Methylococcales S Protein of unknown function (DUF2459) - - - - - - - - - - - - DUF2459 DYD3_k127_1770523_2 525257.HMPREF0204_10711 6.768e-05 55.0 2A91S@1|root,30Y5S@2|Bacteria,4PHUT@976|Bacteroidetes,1ID3S@117743|Flavobacteriia,3ZSXE@59732|Chryseobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1770523_0 1123276.KB893245_gene1332 1.647e-125 409.0 COG3394@1|root,COG3394@2|Bacteria,4PNAT@976|Bacteroidetes,47TGM@768503|Cytophagia 976|Bacteroidetes G YdjC-like protein - - 3.5.1.105 ko:K03478 - - - - ko00000,ko01000 - - - YdjC DYD3_k127_17710_2 313606.M23134_01410 9.268e-38 148.0 COG1595@1|root,COG1595@2|Bacteria,4NQCH@976|Bacteroidetes,47PTY@768503|Cytophagia 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_17710_0 880070.Cycma_2225 4.224e-225 706.0 COG1696@1|root,COG1696@2|Bacteria,4NFK5@976|Bacteroidetes,47KQS@768503|Cytophagia 976|Bacteroidetes M membrane protein involved in D-alanine export - - - - - - - - - - - - MBOAT DYD3_k127_17710_1 1341155.FSS13T_19110 1.8e-48 183.0 COG2755@1|root,COG2755@2|Bacteria,4NNAQ@976|Bacteroidetes,1I24P@117743|Flavobacteriia 976|Bacteroidetes E lipolytic protein G-D-S-L family - - - - - - - - - - - - - DYD3_k127_1772755_3 700598.Niako_4484 1.967e-86 295.0 2DKFZ@1|root,309D6@2|Bacteria,4NEGR@976|Bacteroidetes,1IY3C@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4382) - - - - - - - - - - - - CarboxypepD_reg,DUF4382 DYD3_k127_1772755_4 1042377.AFPJ01000032_gene2781 3.104e-20 95.0 COG2350@1|root,COG2350@2|Bacteria,1NCHB@1224|Proteobacteria,1SG2M@1236|Gammaproteobacteria,46BI7@72275|Alteromonadaceae 1236|Gammaproteobacteria S YCII-related domain - - - - - - - - - - - - YCII DYD3_k127_1772755_1 700598.Niako_5880 4.962e-260 806.0 COG1488@1|root,COG1488@2|Bacteria,4NGVU@976|Bacteroidetes,1IS54@117747|Sphingobacteriia 976|Bacteroidetes H PFAM Nicotinate phosphoribosyltransferase (NAPRTase) family nadV - 2.4.2.12 ko:K03462 ko00760,ko01100,ko04621,map00760,map01100,map04621 - R01271 RC00033 ko00000,ko00001,ko01000 - - - NAPRTase DYD3_k127_1772755_0 504472.Slin_0947 2.191e-300 941.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NWV@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_1772755_2 700598.Niako_4557 7.256e-89 296.0 COG0284@1|root,COG0284@2|Bacteria,4NE12@976|Bacteroidetes,1IQ9S@117747|Sphingobacteriia 976|Bacteroidetes F Orotidine 5''-phosphate decarboxylase pyrF GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 ko:K01591 ko00240,ko01100,map00240,map01100 M00051 R00965 RC00409 ko00000,ko00001,ko00002,ko01000 - - - OMPdecase DYD3_k127_177803_3 509635.N824_29625 2.095e-06 50.0 COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,4NESR@976|Bacteroidetes,1IQI9@117747|Sphingobacteriia 976|Bacteroidetes L DNA ligase - - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,LigD_N DYD3_k127_177803_1 1305737.JAFX01000001_gene2484 1.41e-127 420.0 COG1373@1|root,COG1373@2|Bacteria,4NE3E@976|Bacteroidetes,47P2P@768503|Cytophagia 976|Bacteroidetes S AAA domain - - - - - - - - - - - - AAA_14 DYD3_k127_177803_2 509635.N824_00110 1.072e-44 184.0 COG0584@1|root,COG0584@2|Bacteria,4NMIW@976|Bacteroidetes,1IV3W@117747|Sphingobacteriia 976|Bacteroidetes C Glycerophosphoryl diester phosphodiesterase family - - - - - - - - - - - - GDPD DYD3_k127_177803_0 1123248.KB893317_gene4359 4.531e-183 595.0 COG2333@1|root,COG2333@2|Bacteria,4NH12@976|Bacteroidetes,1ISHP@117747|Sphingobacteriia 976|Bacteroidetes S competence protein COMEC - - - - - - - - - - - - Lactamase_B DYD3_k127_1779706_0 1267211.KI669560_gene1989 3.778e-167 529.0 COG1506@1|root,COG1506@2|Bacteria,4NE2Q@976|Bacteroidetes,1IQRG@117747|Sphingobacteriia 976|Bacteroidetes E peptidase S9 - - - - - - - - - - - - DPPIV_N,Peptidase_S9 DYD3_k127_1779706_1 1392490.JHZX01000001_gene3059 1.563e-90 304.0 COG3279@1|root,COG3279@2|Bacteria,4NKXC@976|Bacteroidetes,1I0BK@117743|Flavobacteriia 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_1779706_2 746697.Aeqsu_0610 1.961e-85 309.0 COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1HWYS@117743|Flavobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HATPase_c_2,HisKA_2,TPR_10,TPR_12,TPR_7,TPR_8,Y_Y_Y DYD3_k127_1779706_3 1131812.JQMS01000001_gene2956 3.232e-54 199.0 COG2329@1|root,COG2329@2|Bacteria,4PCJP@976|Bacteroidetes,1IN27@117743|Flavobacteriia,2NXCQ@237|Flavobacterium 976|Bacteroidetes S Antibiotic biosynthesis monooxygenase - - - - - - - - - - - - - DYD3_k127_178421_0 504472.Slin_1719 0.0 1290.0 COG3250@1|root,COG3250@2|Bacteria,4NEWN@976|Bacteroidetes,47NBM@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 2 family - - 3.2.1.23 ko:K01190 ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100 - R01105,R01678,R03355,R04783,R06114 RC00049,RC00452 ko00000,ko00001,ko01000 - - - DUF4982,Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N DYD3_k127_178421_1 700598.Niako_0752 2.359e-164 523.0 COG1609@1|root,COG1609@2|Bacteria,4NDW6@976|Bacteroidetes,1INZB@117747|Sphingobacteriia 976|Bacteroidetes K PFAM periplasmic binding protein LacI transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_1,Peripla_BP_3 DYD3_k127_1792425_7 1123248.KB893316_gene4543 2.581e-27 111.0 COG0512@1|root,COG0512@2|Bacteria,4NE4I@976|Bacteroidetes,1IQIF@117747|Sphingobacteriia 976|Bacteroidetes EH TIGRFAM glutamine amidotransferase of anthranilate synthase trpG - 4.1.3.27 ko:K01658 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - GATase DYD3_k127_1792425_6 46234.ANA_C20489 1.527e-45 168.0 COG0614@1|root,COG0614@2|Bacteria,1G79B@1117|Cyanobacteria,1HNFV@1161|Nostocales 1117|Cyanobacteria P PD-(D/E)XK nuclease superfamily - - - - - - - - - - - - PDDEXK_3 DYD3_k127_1792425_0 700598.Niako_0358 7.89e-170 534.0 COG0547@1|root,COG0547@2|Bacteria,4NH2J@976|Bacteroidetes,1INY5@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) trpD GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 ko:K00766,ko:K13497 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R00985,R00986,R01073 RC00010,RC00440,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 DYD3_k127_1792425_8 700598.Niako_0358 2.319e-19 87.0 COG0547@1|root,COG0547@2|Bacteria,4NH2J@976|Bacteroidetes,1INY5@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) trpD GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 ko:K00766,ko:K13497 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R00985,R00986,R01073 RC00010,RC00440,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 DYD3_k127_1792425_3 700598.Niako_0359 4.801e-89 301.0 COG0134@1|root,COG0134@2|Bacteria,4NFJT@976|Bacteroidetes,1IPVG@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the TrpC family trpC GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 ko:K01609 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03508 RC00944 ko00000,ko00001,ko00002,ko01000 - - - IGPS DYD3_k127_1792425_2 700598.Niako_0360 2.116e-123 397.0 COG0135@1|root,COG0135@2|Bacteria,4NNQ1@976|Bacteroidetes,1IS9C@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the TrpF family trpF - 5.3.1.24 ko:K01817 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03509 RC00945 ko00000,ko00001,ko00002,ko01000 - - - PRAI DYD3_k127_1792425_5 700598.Niako_0361 1.241e-72 248.0 COG1247@1|root,COG1247@2|Bacteria,4NPIE@976|Bacteroidetes,1IZMK@117747|Sphingobacteriia 976|Bacteroidetes M Acetyltransferase (GNAT) domain yncA - 2.3.1.183 ko:K03823 ko00440,ko01130,map00440,map01130 - R08871,R08938 RC00004,RC00064 ko00000,ko00001,ko01000 - - - Acetyltransf_4 DYD3_k127_1792425_4 1287116.X734_27895 1.116e-73 256.0 COG0504@1|root,COG0504@2|Bacteria,1MUIT@1224|Proteobacteria,2TS4Y@28211|Alphaproteobacteria 2|Bacteria F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates pyrG2 - 6.3.4.2 ko:K01937 ko00240,ko01100,map00240,map01100 M00052 R00571,R00573 RC00010,RC00074 ko00000,ko00001,ko00002,ko01000 - - - GATase DYD3_k127_1792425_9 1392488.JHZY01000002_gene534 3.117e-11 75.0 COG0515@1|root,COG0515@2|Bacteria,4NJH8@976|Bacteroidetes,1I4US@117743|Flavobacteriia 976|Bacteroidetes KLT WG containing repeat - - - - - - - - - - - - WG_beta_rep DYD3_k127_1792425_1 700598.Niako_0362 1.226e-148 473.0 COG0133@1|root,COG0133@2|Bacteria,4NDWP@976|Bacteroidetes,1IP5T@117747|Sphingobacteriia 976|Bacteroidetes E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine trpB - 4.2.1.20,5.3.1.24 ko:K01696,ko:K01817 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722,R03509 RC00209,RC00210,RC00700,RC00701,RC00945,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP DYD3_k127_180863_0 204669.Acid345_3584 2.068e-35 139.0 COG0346@1|root,COG0346@2|Bacteria,3Y5YF@57723|Acidobacteria,2JNP7@204432|Acidobacteriia 204432|Acidobacteriia E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD3_k127_180863_1 431943.CKL_2571 2.196e-22 99.0 COG0574@1|root,COG0574@2|Bacteria,1UIEA@1239|Firmicutes,25EJM@186801|Clostridia,36DBV@31979|Clostridiaceae 186801|Clostridia GT pyruvate phosphate dikinase, PEP ppdK - 2.7.9.1,2.7.9.2 ko:K01006,ko:K01007 ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200 M00169,M00171,M00172,M00173,M00374 R00199,R00206 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N DYD3_k127_1815413_3 700598.Niako_4671 1.014e-101 333.0 COG0094@1|root,COG0094@2|Bacteria,4NEGY@976|Bacteroidetes,1IPX4@117747|Sphingobacteriia 976|Bacteroidetes J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits rplE GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02931 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L5,Ribosomal_L5_C DYD3_k127_1815413_10 700598.Niako_4670 5.931e-44 160.0 COG0199@1|root,COG0199@2|Bacteria,4NQ6N@976|Bacteroidetes,1ISRK@117747|Sphingobacteriia 976|Bacteroidetes J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site rpsN GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02954 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S14 DYD3_k127_1815413_6 700598.Niako_4669 1.676e-73 248.0 COG0096@1|root,COG0096@2|Bacteria,4NNFW@976|Bacteroidetes,1IS0B@117747|Sphingobacteriia 976|Bacteroidetes J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit rpsH GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02994 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S8 DYD3_k127_1815413_5 1267211.KI669560_gene1332 1.125e-88 295.0 COG0097@1|root,COG0097@2|Bacteria,4NGJM@976|Bacteroidetes,1IRC9@117747|Sphingobacteriia 976|Bacteroidetes J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center rplF GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02933 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L6 DYD3_k127_1815413_9 700598.Niako_4667 8.341e-51 182.0 COG0256@1|root,COG0256@2|Bacteria,4NQAS@976|Bacteroidetes,1ITI7@117747|Sphingobacteriia 976|Bacteroidetes J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance rplR GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - ko:K02881 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L18p DYD3_k127_1815413_4 700598.Niako_4666 1.345e-93 308.0 COG0098@1|root,COG0098@2|Bacteria,4NG1Z@976|Bacteroidetes,1IQ9B@117747|Sphingobacteriia 976|Bacteroidetes J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body rpsE GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02988 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S5,Ribosomal_S5_C DYD3_k127_1815413_11 700598.Niako_4665 2.484e-26 109.0 COG1841@1|root,COG1841@2|Bacteria,4NUXV@976|Bacteroidetes,1IUA3@117747|Sphingobacteriia 976|Bacteroidetes J Ribosomal protein L30 rpmD GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02907 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L30 DYD3_k127_1815413_8 1267211.KI669560_gene1336 4.472e-71 242.0 COG0200@1|root,COG0200@2|Bacteria,4NNFQ@976|Bacteroidetes,1IRSX@117747|Sphingobacteriia 976|Bacteroidetes J binds to the 23S rRNA rplO GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02876 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27A DYD3_k127_1815413_0 700598.Niako_4663 3.255e-244 759.0 COG0201@1|root,COG0201@2|Bacteria,4NEPU@976|Bacteroidetes,1IPEC@117747|Sphingobacteriia 976|Bacteroidetes U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently secY - - ko:K03076 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5 - - SecY DYD3_k127_1815413_2 700598.Niako_4662 2.111e-141 452.0 COG0024@1|root,COG0024@2|Bacteria,4NERQ@976|Bacteroidetes,1IP59@117747|Sphingobacteriia 976|Bacteroidetes J Methionine aminopeptidase map - 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 DYD3_k127_1815413_1 700598.Niako_4661 1.432e-199 628.0 COG2081@1|root,COG2081@2|Bacteria,4NFME@976|Bacteroidetes,1IP0F@117747|Sphingobacteriia 976|Bacteroidetes S HI0933 family yhiN - - ko:K07007 - - - - ko00000 - - - HI0933_like DYD3_k127_1815413_7 700598.Niako_4660 5.969e-72 245.0 COG2318@1|root,COG2318@2|Bacteria,4NQEI@976|Bacteroidetes,1IXPF@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1572) - - - - - - - - - - - - DUF1572 DYD3_k127_182382_3 1340493.JNIF01000004_gene875 2.482e-05 55.0 COG1361@1|root,COG4625@1|root,COG1361@2|Bacteria,COG4625@2|Bacteria,3Y354@57723|Acidobacteria 57723|Acidobacteria M PKD domain containing protein - - - - - - - - - - - - He_PIG DYD3_k127_182382_0 700598.Niako_3251 1.616e-74 265.0 COG3055@1|root,COG3055@2|Bacteria,4NG50@976|Bacteroidetes,1IRK4@117747|Sphingobacteriia 976|Bacteroidetes DZ Kelch repeat type 1 - - - - - - - - - - - - Kelch_1,Kelch_3,Kelch_4,Kelch_6,TIG DYD3_k127_182382_1 1121481.AUAS01000018_gene477 3.804e-50 186.0 COG3279@1|root,COG3279@2|Bacteria,4NK6R@976|Bacteroidetes,47XDW@768503|Cytophagia 976|Bacteroidetes T Two component transcriptional regulator, LytTR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_1827644_0 700598.Niako_0001 9.836e-305 935.0 COG0593@1|root,COG0593@2|Bacteria,4NE6Q@976|Bacteroidetes,1INXF@117747|Sphingobacteriia 976|Bacteroidetes L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids dnaA GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - ko:K02313 ko02020,ko04112,map02020,map04112 - - - ko00000,ko00001,ko03032,ko03036 - - - Bac_DnaA,Bac_DnaA_C,DnaA_N DYD3_k127_1827644_1 700598.Niako_7366 9.896e-257 799.0 COG2509@1|root,COG2509@2|Bacteria,4NEUQ@976|Bacteroidetes,1IQIE@117747|Sphingobacteriia 976|Bacteroidetes S FAD-dependent dehydrogenase - - - ko:K07137 - - - - ko00000 - - - FAD_binding_2,FAD_binding_3,GIDA,HI0933_like,Pyr_redox_2 DYD3_k127_1829962_2 589865.DaAHT2_0375 1.166e-60 220.0 COG4976@1|root,COG4976@2|Bacteria,1QWSE@1224|Proteobacteria,43CPQ@68525|delta/epsilon subdivisions,2X7WX@28221|Deltaproteobacteria 28221|Deltaproteobacteria S PFAM Methyltransferase type 11 - - - - - - - - - - - - Methyltransf_25 DYD3_k127_1829962_0 1173028.ANKO01000250_gene2401 1.442e-97 321.0 COG0399@1|root,COG0399@2|Bacteria,1G0XH@1117|Cyanobacteria,1H93R@1150|Oscillatoriales 1117|Cyanobacteria E Belongs to the DegT DnrJ EryC1 family - - 2.6.1.102 ko:K13010 ko00520,map00520 - R10460 RC00006,RC00781 ko00000,ko00001,ko01000,ko01005,ko01007 - - - DegT_DnrJ_EryC1 DYD3_k127_1831963_0 485918.Cpin_0081 6.774e-223 699.0 COG1231@1|root,COG1231@2|Bacteria,4NH02@976|Bacteroidetes 976|Bacteroidetes E Flavin containing amine oxidoreductase - - 1.4.3.4 ko:K00274 ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034 M00135 R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354 RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713 ko00000,ko00001,ko00002,ko01000 - - - Amino_oxidase DYD3_k127_1831963_1 700598.Niako_1512 1.271e-95 319.0 COG5495@1|root,COG5495@2|Bacteria,4NI4M@976|Bacteroidetes,1IRXA@117747|Sphingobacteriia 976|Bacteroidetes S NADP oxidoreductase coenzyme F420-dependent - - - - - - - - - - - - DUF2520,F420_oxidored,Rossmann-like DYD3_k127_1831963_2 700598.Niako_1513 5.235e-79 270.0 COG2318@1|root,COG2318@2|Bacteria,4NQBY@976|Bacteroidetes,1ISTP@117747|Sphingobacteriia 976|Bacteroidetes S DinB superfamily - - - - - - - - - - - - DinB_2 DYD3_k127_1831963_4 485918.Cpin_1661 1.917e-18 95.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis - - - - - - - - - - - - Big_5,CBM_3,PKD DYD3_k127_1831963_5 485918.Cpin_1661 1.386e-16 91.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis - - - - - - - - - - - - Big_5,CBM_3,PKD DYD3_k127_1831963_3 700598.Niako_1514 1.561e-36 140.0 COG1404@1|root,COG1404@2|Bacteria,4NF1M@976|Bacteroidetes,1IV25@117747|Sphingobacteriia 976|Bacteroidetes O Peptidase S8 and S53 subtilisin kexin sedolisin - - - - - - - - - - - - Peptidase_S8 DYD3_k127_184042_2 485913.Krac_4793 1.408e-14 74.0 COG3832@1|root,COG3832@2|Bacteria 2|Bacteria J glyoxalase III activity - - - - - - - - - - - - AHSA1 DYD3_k127_184042_1 700598.Niako_2188 2.682e-179 589.0 COG1629@1|root,COG4771@2|Bacteria,4NF4B@976|Bacteroidetes,1IW7P@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_184042_3 1229276.DI53_2646 5.266e-05 54.0 28PKM@1|root,2ZCA0@2|Bacteria 2|Bacteria S Domain of unknown function (DUF4249) - - - - - - - - - - - - DUF4249 DYD3_k127_184042_0 1123248.KB893326_gene1541 6.638e-215 671.0 COG0129@1|root,COG0129@2|Bacteria,4NEKY@976|Bacteroidetes,1IQEN@117747|Sphingobacteriia 976|Bacteroidetes EG Belongs to the IlvD Edd family - - - - - - - - - - - - ILVD_EDD DYD3_k127_1860214_1 700598.Niako_0313 1.92e-128 415.0 COG0366@1|root,COG3280@1|root,COG0366@2|Bacteria,COG3280@2|Bacteria,4NEVK@976|Bacteroidetes,1IP3J@117747|Sphingobacteriia 976|Bacteroidetes G Alpha amylase, catalytic domain amyB - - - - - - - - - - - Alpha-amylase,Alpha-amylase_C,Malt_amylase_C DYD3_k127_1860214_0 700598.Niako_0312 1.035e-148 473.0 COG0761@1|root,COG0761@2|Bacteria 2|Bacteria IM 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity ispH - 1.17.7.4,2.7.4.25 ko:K00945,ko:K02945,ko:K03527 ko00240,ko00900,ko01100,ko01110,ko01130,ko03010,map00240,map00900,map01100,map01110,map01130,map03010 M00052,M00096,M00178 R00158,R00512,R01665,R05884,R08210 RC00002,RC01137,RC01487 br01610,ko00000,ko00001,ko00002,ko01000,ko03011 - - iIT341.HP0400,iLJ478.TM1444 LYTB,S1 DYD3_k127_1865593_1 485918.Cpin_1924 3.844e-18 84.0 COG1171@1|root,COG1171@2|Bacteria,4NEY2@976|Bacteroidetes,1INNU@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA ilvA - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - PALP,Thr_dehydrat_C DYD3_k127_1865593_0 700598.Niako_0108 0.0 1603.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,4NFKH@976|Bacteroidetes,1IP8F@117747|Sphingobacteriia 976|Bacteroidetes E glutamate synthase gltB - 1.4.1.13,1.4.1.14,1.4.7.1 ko:K00265,ko:K00284 ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230 - R00021,R00093,R00114,R00248,R10086 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase DYD3_k127_1875052_0 700598.Niako_2627 0.0 1302.0 COG0480@1|root,COG0480@2|Bacteria,4NG4H@976|Bacteroidetes,1IPW9@117747|Sphingobacteriia 976|Bacteroidetes J elongation factor G domain IV fusA2 - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 DYD3_k127_1875052_1 1122176.KB903532_gene2494 5.192e-75 286.0 COG1404@1|root,COG1404@2|Bacteria,4PPNW@976|Bacteroidetes 976|Bacteroidetes O domain protein - - - - - - - - - - - - - DYD3_k127_1875052_2 760192.Halhy_4069 1.92e-62 221.0 COG2197@1|root,COG2197@2|Bacteria,4NUSF@976|Bacteroidetes 976|Bacteroidetes K COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_1875052_3 760192.Halhy_6197 1.783e-61 220.0 COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1IT68@117747|Sphingobacteriia 976|Bacteroidetes T PFAM histidine kinase - - - - - - - - - - - - HATPase_c,HATPase_c_2,HisKA_2,TPR_10,TPR_12,TPR_8 DYD3_k127_1895676_4 700598.Niako_7038 4.535e-77 262.0 COG0664@1|root,COG0664@2|Bacteria,4NN09@976|Bacteroidetes,1ISVW@117747|Sphingobacteriia 976|Bacteroidetes T cyclic nucleotide-binding domain - - - - - - - - - - - - cNMP_binding DYD3_k127_1895676_2 700598.Niako_7039 1.779e-208 653.0 COG0389@1|root,COG0389@2|Bacteria,4NGPH@976|Bacteroidetes,1J04T@117747|Sphingobacteriia 976|Bacteroidetes L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII - - 2.7.7.7 ko:K02346 - - - - ko00000,ko01000,ko03400 - - - IMS,IMS_C,IMS_HHH DYD3_k127_1895676_3 700598.Niako_7041 4.312e-123 396.0 COG0450@1|root,COG0450@2|Bacteria,4NEZZ@976|Bacteroidetes,1IPQ0@117747|Sphingobacteriia 976|Bacteroidetes O AhpC TSA family - - 1.11.1.15 ko:K03386 ko04214,map04214 - - - ko00000,ko00001,ko01000,ko04147 - - - 1-cysPrx_C,AhpC-TSA DYD3_k127_1895676_0 700598.Niako_7043 1.152e-229 716.0 COG1228@1|root,COG1228@2|Bacteria,4NFI3@976|Bacteroidetes 976|Bacteroidetes Q COG1228 Imidazolonepropionase and related - - - - - - - - - - - - Amidohydro_1 DYD3_k127_1895676_5 86416.Clopa_1706 1.644e-30 125.0 COG0454@1|root,COG0456@2|Bacteria,1VC2F@1239|Firmicutes,24JDW@186801|Clostridia,36PXD@31979|Clostridiaceae 186801|Clostridia K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 DYD3_k127_1895676_1 504472.Slin_0936 1.948e-226 719.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_1904016_0 700598.Niako_0166 6.002e-303 938.0 COG0457@1|root,COG0823@1|root,COG2885@1|root,COG0457@2|Bacteria,COG0823@2|Bacteria,COG2885@2|Bacteria,4NE6G@976|Bacteroidetes,1IPCG@117747|Sphingobacteriia 976|Bacteroidetes MU Belongs to the ompA family - - - - - - - - - - - - OmpA,PD40,TPR_16,TPR_2,TPR_8 DYD3_k127_1904016_1 700598.Niako_0165 1.906e-143 465.0 COG0272@1|root,COG0758@1|root,COG0272@2|Bacteria,COG0758@2|Bacteria,4NF7T@976|Bacteroidetes,1IPSK@117747|Sphingobacteriia 976|Bacteroidetes L DNA protecting protein DprA dprA - - ko:K04096 - - - - ko00000 - - - DNA_processg_A,HHH_5 DYD3_k127_1904016_2 700598.Niako_0164 3.49e-124 403.0 COG0653@1|root,COG0653@2|Bacteria,4NF7C@976|Bacteroidetes,1IPHM@117747|Sphingobacteriia 976|Bacteroidetes U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - Helicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW DYD3_k127_1905543_0 700598.Niako_5733 2.329e-208 653.0 COG0064@1|root,COG0064@2|Bacteria,4NF3B@976|Bacteroidetes,1INQU@117747|Sphingobacteriia 976|Bacteroidetes J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) gatB - 6.3.5.6,6.3.5.7 ko:K02434 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - GatB_N,GatB_Yqey DYD3_k127_1905543_1 700598.Niako_5734 4.346e-34 136.0 COG0526@1|root,COG0526@2|Bacteria,4NQ06@976|Bacteroidetes,1ISI1@117747|Sphingobacteriia 976|Bacteroidetes O Domain of unknown function (DUF4369) - - - - - - - - - - - - AhpC-TSA,DUF4369 DYD3_k127_1907624_0 504472.Slin_2897 4.663e-88 297.0 COG3503@1|root,COG3503@2|Bacteria,4NFAF@976|Bacteroidetes,47KPK@768503|Cytophagia 976|Bacteroidetes S Protein of unknown function (DUF1624) - - - - - - - - - - - - DUF1624 DYD3_k127_1907624_1 1121904.ARBP01000045_gene1842 2.411e-45 181.0 COG0457@1|root,COG0642@1|root,COG0745@1|root,COG0457@2|Bacteria,COG0745@2|Bacteria,COG2205@2|Bacteria,4NDXU@976|Bacteroidetes,47TVA@768503|Cytophagia 976|Bacteroidetes T helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,TPR_12,TPR_8,Y_Y_Y DYD3_k127_1933356_5 700598.Niako_6624 8.021e-26 113.0 COG0457@1|root,COG0457@2|Bacteria,4NERG@976|Bacteroidetes,1IR9Z@117747|Sphingobacteriia 976|Bacteroidetes S Oxygen tolerance batD - - - - - - - - - - - BatD,TPR_2 DYD3_k127_1933356_1 700598.Niako_6625 9.37e-127 407.0 COG0745@1|root,COG0745@2|Bacteria,4NGXP@976|Bacteroidetes,1INQ4@117747|Sphingobacteriia 976|Bacteroidetes T COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - ko:K07658 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C DYD3_k127_1933356_2 700598.Niako_6626 1.167e-126 412.0 COG0642@1|root,COG2205@2|Bacteria,4NK58@976|Bacteroidetes,1IPNM@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA DYD3_k127_1933356_3 700598.Niako_6627 4.31e-51 187.0 2ADSH@1|root,313I2@2|Bacteria,4NQMU@976|Bacteroidetes,1IU3P@117747|Sphingobacteriia 976|Bacteroidetes S GldH lipoprotein gldH GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0017144,GO:0040011,GO:0042737,GO:0043170,GO:0044237,GO:0044248,GO:0046348,GO:0048870,GO:0051179,GO:0051674,GO:0071704,GO:0071976,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - - - - - - - - - - GldH_lipo DYD3_k127_1933356_0 700598.Niako_6628 1.924e-145 466.0 COG1561@1|root,COG1561@2|Bacteria,4NEU4@976|Bacteroidetes,1IQ8K@117747|Sphingobacteriia 976|Bacteroidetes S PFAM YicC-like family, N-terminal region - - - - - - - - - - - - DUF1732,YicC_N DYD3_k127_1933356_4 485918.Cpin_0677 1.678e-26 109.0 COG1187@1|root,COG1187@2|Bacteria,4NM4U@976|Bacteroidetes,1IY6P@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the pseudouridine synthase RsuA family rluE - 5.4.99.20 ko:K06181 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2 DYD3_k127_193550_0 700598.Niako_1231 2.605e-204 646.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IP40@117747|Sphingobacteriia 976|Bacteroidetes S SPTR ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_1936063_0 1123248.KB893327_gene772 1.645e-134 431.0 COG4977@1|root,COG4977@2|Bacteria,4NGSR@976|Bacteroidetes,1IP0J@117747|Sphingobacteriia 976|Bacteroidetes K DJ-1/PfpI family - - - - - - - - - - - - DJ-1_PfpI,HTH_18 DYD3_k127_1936063_2 491205.JARQ01000005_gene1479 1.114e-29 132.0 2B9NZ@1|root,3231D@2|Bacteria,4NR0T@976|Bacteroidetes,1I4J7@117743|Flavobacteriia,3ZUFF@59732|Chryseobacterium 976|Bacteroidetes S Protein of unknown function (DUF1579) - - - - - - - - - - - - DUF1579 DYD3_k127_1936063_3 485918.Cpin_2572 1.278e-10 65.0 COG1961@1|root,COG1961@2|Bacteria,4NFJA@976|Bacteroidetes,1IW8Y@117747|Sphingobacteriia 976|Bacteroidetes L resolvase domain protein - - - - - - - - - - - - Recombinase,Resolvase,Zn_ribbon_recom DYD3_k127_1936063_1 700598.Niako_1982 1.641e-55 197.0 COG0697@1|root,COG0697@2|Bacteria,4NGPQ@976|Bacteroidetes,1IXG8@117747|Sphingobacteriia 976|Bacteroidetes EG EamA-like transporter family - - - - - - - - - - - - EamA DYD3_k127_1944714_2 1408813.AYMG01000001_gene3335 5.392e-23 98.0 COG4225@1|root,COG4225@2|Bacteria,4NFWI@976|Bacteroidetes,1IP2G@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Glycosyl Hydrolase Family 88 - - 3.2.1.172 ko:K15532 - - - - ko00000,ko01000 - GH105 - Glyco_hydro_88 DYD3_k127_1944714_1 700598.Niako_5297 4.965e-255 793.0 COG0246@1|root,COG0246@2|Bacteria,4NEMT@976|Bacteroidetes,1INT3@117747|Sphingobacteriia 976|Bacteroidetes G Mannitol dehydrogenase domain protein uxaB GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006063,GO:0006082,GO:0008150,GO:0008152,GO:0009026,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019586,GO:0019698,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046395,GO:0046396,GO:0046397,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 1.1.1.17,1.1.1.58 ko:K00009,ko:K00041 ko00040,ko00051,ko01100,map00040,map00051,map01100 M00631 R02555,R02703 RC00085 ko00000,ko00001,ko00002,ko01000 - - - Mannitol_dh,Mannitol_dh_C DYD3_k127_1944714_0 926549.KI421517_gene2789 4.944e-278 862.0 COG2721@1|root,COG2721@2|Bacteria,4NFVQ@976|Bacteroidetes,47K7S@768503|Cytophagia 976|Bacteroidetes G PFAM D-galactarate dehydratase Altronate hydrolase uxaA - 4.2.1.7 ko:K01685 ko00040,ko01100,map00040,map01100 M00631 R01540 RC00543 ko00000,ko00001,ko00002,ko01000 - - - GD_AH_C,SAF DYD3_k127_1944714_3 700598.Niako_5295 3.656e-18 83.0 COG1904@1|root,COG1904@2|Bacteria,4NFHS@976|Bacteroidetes,1IQ2E@117747|Sphingobacteriia 976|Bacteroidetes G Glucuronate isomerase uxaC - 5.3.1.12 ko:K01812 ko00040,ko01100,map00040,map01100 M00061,M00631 R01482,R01983 RC00376 ko00000,ko00001,ko00002,ko01000 - - - UxaC DYD3_k127_194516_2 700598.Niako_7237 2.524e-101 340.0 COG0457@1|root,COG0457@2|Bacteria,4NIEU@976|Bacteroidetes,1IPR2@117747|Sphingobacteriia 976|Bacteroidetes NU PFAM Tetratricopeptide - - - - - - - - - - - - TPR_16,TPR_19,TPR_2,TPR_6,TPR_8 DYD3_k127_194516_1 700598.Niako_7236 2.033e-112 367.0 COG0745@1|root,COG0745@2|Bacteria,4NHNZ@976|Bacteroidetes 976|Bacteroidetes T transcriptional regulator - - - - - - - - - - - - Response_reg,Trans_reg_C DYD3_k127_194516_0 700598.Niako_7235 4.098e-172 552.0 COG0642@1|root,COG2205@2|Bacteria,4NEIS@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HAMP,HATPase_c,HisKA DYD3_k127_1948058_2 700598.Niako_4885 2.184e-67 233.0 COG0739@1|root,COG0739@2|Bacteria,4NPNT@976|Bacteroidetes 976|Bacteroidetes M peptidase M23 - - - - - - - - - - - - Peptidase_M23 DYD3_k127_1948058_1 700598.Niako_4620 5.283e-165 526.0 COG1594@1|root,COG1594@2|Bacteria,4PKAQ@976|Bacteroidetes,1IWYV@117747|Sphingobacteriia 976|Bacteroidetes K Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen - - - - - - - - - - - - - DYD3_k127_1948058_0 700598.Niako_4619 1.088e-168 535.0 COG4260@1|root,COG4260@2|Bacteria,4NHXG@976|Bacteroidetes,1IWDA@117747|Sphingobacteriia 976|Bacteroidetes S virion core protein (lumpy skin disease virus) - - - - - - - - - - - - Band_7_1,SHOCT DYD3_k127_1948058_3 1123508.JH636453_gene5802 7.31e-06 51.0 COG3210@1|root,COG3391@1|root,COG3827@1|root,COG4932@1|root,COG3210@2|Bacteria,COG3391@2|Bacteria,COG3827@2|Bacteria,COG4932@2|Bacteria,2IY8U@203682|Planctomycetes 203682|Planctomycetes M Integrin alpha (beta-propellor repeats). - - - - - - - - - - - - VCBS DYD3_k127_1956898_1 700598.Niako_1943 2.273e-71 249.0 COG2010@1|root,COG2010@2|Bacteria,4NFMJ@976|Bacteroidetes,1IRZW@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Cytochrome c, class I ccoP - - ko:K00406 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrome_CBB3,FixP_N DYD3_k127_1956898_2 700598.Niako_1942 1.672e-17 83.0 COG2010@1|root,COG2010@2|Bacteria,4PJ6S@976|Bacteroidetes,1IZP1@117747|Sphingobacteriia 976|Bacteroidetes C Cytochrome c - - - - - - - - - - - - - DYD3_k127_1956898_0 700598.Niako_1941 6.851e-279 863.0 COG2993@1|root,COG3278@1|root,COG2993@2|Bacteria,COG3278@2|Bacteria,4NEGM@976|Bacteroidetes,1IP6D@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the heme-copper respiratory oxidase family ccoN - 1.9.3.1 ko:K15862 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - COX1,FixO DYD3_k127_19597_1 700598.Niako_4806 2.485e-88 298.0 2C08D@1|root,2Z9UN@2|Bacteria,4NGRP@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - FHA DYD3_k127_19597_0 700598.Niako_5362 1.367e-135 439.0 COG1609@1|root,COG1609@2|Bacteria,4NDW6@976|Bacteroidetes 976|Bacteroidetes K Periplasmic binding protein LacI transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_1,Peripla_BP_3 DYD3_k127_19597_2 700598.Niako_5365 6.963e-72 244.0 COG2207@1|root,COG2207@2|Bacteria,4NE6T@976|Bacteroidetes,1INM9@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - - - - - - - - - - AraC_binding,Cupin_2,HTH_18 DYD3_k127_1966330_2 700598.Niako_2425 1.561e-266 826.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,1IP17@117747|Sphingobacteriia 976|Bacteroidetes G COGs COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase - - 3.2.1.177 ko:K01811 - - - - ko00000,ko01000 - GH31 - DUF4968,DUF5110,Gal_mutarotas_2,Glyco_hydro_31 DYD3_k127_1966330_3 1123248.KB893318_gene4094 1.806e-151 486.0 COG0667@1|root,COG0667@2|Bacteria,4NGRK@976|Bacteroidetes,1IQSB@117747|Sphingobacteriia 976|Bacteroidetes C Aldo/keto reductase family - - 1.1.1.122 ko:K00064 ko00051,ko00053,ko01100,ko01110,ko01120,map00051,map00053,map01100,map01110,map01120 M00114 R07675,R08926 RC00066,RC00161 ko00000,ko00001,ko00002,ko01000 - - - Aldo_ket_red DYD3_k127_1966330_0 926549.KI421517_gene48 0.0 1373.0 COG1554@1|root,COG1554@2|Bacteria,4NEWW@976|Bacteroidetes,47JFT@768503|Cytophagia 976|Bacteroidetes G Glycosyl hydrolase family 65, N-terminal domain - - 3.2.1.51 ko:K15923 ko00511,map00511 - - - ko00000,ko00001,ko01000 - GH95 - Glyco_hyd_65N_2 DYD3_k127_1966330_4 700598.Niako_5390 4.577e-65 229.0 2DB9P@1|root,2Z7Y1@2|Bacteria,4NHQN@976|Bacteroidetes,1IYRD@117747|Sphingobacteriia 976|Bacteroidetes S Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_1966330_1 926549.KI421517_gene807 0.0 1070.0 COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,4NH58@976|Bacteroidetes,47TQS@768503|Cytophagia 976|Bacteroidetes CG PQQ-like domain - - - - - - - - - - - - Cytochrome_CBB3,PQQ DYD3_k127_1966330_5 926549.KI421517_gene2802 1.773e-30 126.0 COG1082@1|root,COG1082@2|Bacteria,4NG1K@976|Bacteroidetes,47JT7@768503|Cytophagia 976|Bacteroidetes G Xylose isomerase-like TIM barrel - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_1972777_1 700598.Niako_2352 4.944e-50 197.0 2F79S@1|root,33ZR0@2|Bacteria,4P445@976|Bacteroidetes,1IYA7@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1972777_0 700598.Niako_2352 2.192e-75 272.0 2F79S@1|root,33ZR0@2|Bacteria,4P445@976|Bacteroidetes,1IYA7@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1975868_1 1237149.C900_03820 7.419e-92 313.0 COG0859@1|root,COG0859@2|Bacteria,4P2TG@976|Bacteroidetes 976|Bacteroidetes M Glycosyltransferase family 9 (heptosyltransferase) - - - - - - - - - - - - Glyco_transf_9 DYD3_k127_1975868_2 1163409.UUA_15263 2.508e-10 72.0 COG1853@1|root,COG1853@2|Bacteria 2|Bacteria S FMN binding flr - - - - - - - - - - - Flavin_Reduct DYD3_k127_1975868_4 391589.RGAI101_3763 0.0001701 52.0 COG0500@1|root,COG2226@2|Bacteria,1R8N9@1224|Proteobacteria 1224|Proteobacteria Q methyltransferase - - - - - - - - - - - - Methyltransf_25 DYD3_k127_1975868_0 714943.Mucpa_3269 1.561e-96 327.0 COG0438@1|root,COG0438@2|Bacteria,4NPXB@976|Bacteroidetes,1IXRZ@117747|Sphingobacteriia 976|Bacteroidetes M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 DYD3_k127_1975868_3 700598.Niako_4331 1.7e-06 50.0 COG1132@1|root,COG1132@2|Bacteria,4NIFZ@976|Bacteroidetes,1IV2P@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1132 ABC-type multidrug transport system ATPase and permease components - - - ko:K06148 - - - - ko00000,ko02000 3.A.1 - - ABC_membrane,ABC_tran DYD3_k127_1993280_1 700598.Niako_1600 1.612e-118 387.0 COG0789@1|root,COG5012@1|root,COG0789@2|Bacteria,COG5012@2|Bacteria,4NERC@976|Bacteroidetes,1IS5U@117747|Sphingobacteriia 976|Bacteroidetes K MerR family - - - ko:K22491 - - - - ko00000,ko03000 - - - B12-binding_2,MerR_1 DYD3_k127_1993280_0 700598.Niako_1599 4.507e-230 714.0 COG2204@1|root,COG2204@2|Bacteria,4NE89@976|Bacteroidetes,1IPCA@117747|Sphingobacteriia 976|Bacteroidetes T COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains ntrX - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD3_k127_1997742_1 700598.Niako_2191 3.997e-141 453.0 COG0488@1|root,COG0488@2|Bacteria,4NG1W@976|Bacteroidetes,1IPB4@117747|Sphingobacteriia 976|Bacteroidetes S ABC transporter - - - ko:K06158 - - - - ko00000,ko03012 - - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn DYD3_k127_1997742_0 700598.Niako_2193 0.0 1099.0 COG1752@1|root,COG4775@1|root,COG1752@2|Bacteria,COG4775@2|Bacteria,4NDXY@976|Bacteroidetes,1IPVY@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Patatin-like phospholipase - - - ko:K07001 - - - - ko00000 - - - Bac_surface_Ag,POTRA,Patatin DYD3_k127_1997742_2 700598.Niako_2194 1.379e-41 154.0 COG0010@1|root,COG0010@2|Bacteria,4NEFA@976|Bacteroidetes,1IRUU@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the arginase family hutG - 3.5.3.7,3.5.3.8 ko:K01479,ko:K12255 ko00330,ko00340,ko01100,map00330,map00340,map01100 M00045 R01990,R02285 RC00024,RC00221,RC00329,RC00681 ko00000,ko00001,ko00002,ko01000 - - - Arginase DYD3_k127_1998257_2 700598.Niako_6679 3.937e-166 527.0 COG1660@1|root,COG3178@1|root,COG1660@2|Bacteria,COG3178@2|Bacteria,4NIT0@976|Bacteroidetes,1IV8P@117747|Sphingobacteriia 976|Bacteroidetes S P-loop ATPase protein family - - - - - - - - - - - - APH,ATP_bind_2 DYD3_k127_1998257_1 700598.Niako_4180 2.859e-247 777.0 COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,4NGF6@976|Bacteroidetes,1IRGD@117747|Sphingobacteriia 976|Bacteroidetes P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family kefC - - ko:K03455,ko:K11747 - - - - ko00000,ko02000 2.A.37,2.A.37.1.2 - - Na_H_Exchanger,TrkA_N DYD3_k127_1998257_6 700598.Niako_4181 4.362e-67 235.0 COG2249@1|root,COG2249@2|Bacteria,4NGF7@976|Bacteroidetes,1ISQT@117747|Sphingobacteriia 976|Bacteroidetes S NADPH-dependent FMN reductase yheR - - ko:K11748 - - - - ko00000,ko02000 2.A.37.1.2 - - Flavodoxin_2 DYD3_k127_1998257_4 700598.Niako_6681 2.891e-111 363.0 COG1208@1|root,COG1208@2|Bacteria,4NMJ5@976|Bacteroidetes,1IXAV@117747|Sphingobacteriia 976|Bacteroidetes JM COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) hddC - - - - - - - - - - - NTP_transferase DYD3_k127_1998257_0 700598.Niako_6682 3.014e-307 945.0 COG0029@1|root,COG0029@2|Bacteria,4NGUE@976|Bacteroidetes,1IQPX@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the oxidation of L-aspartate to iminoaspartate nadB - 1.4.3.16 ko:K00278 ko00250,ko00760,ko01100,map00250,map00760,map01100 M00115 R00357,R00481 RC00006,RC02566 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C DYD3_k127_1998257_5 700598.Niako_6683 2.185e-86 293.0 2BRQH@1|root,32KQ7@2|Bacteria,4NZEF@976|Bacteroidetes,1IUQU@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_1998257_3 700598.Niako_6684 2.106e-130 422.0 COG2017@1|root,COG2017@2|Bacteria,4NKUK@976|Bacteroidetes,1IYMB@117747|Sphingobacteriia 976|Bacteroidetes G Aldose 1-epimerase - - 5.1.3.3 ko:K01785 ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130 M00632 R01602,R10619 RC00563 ko00000,ko00001,ko00002,ko01000 - - - Aldose_epim DYD3_k127_2007654_1 1492737.FEM08_21670 1.029e-92 309.0 COG3537@1|root,COG3537@2|Bacteria,4NDYB@976|Bacteroidetes,1HZAM@117743|Flavobacteriia,2NUP9@237|Flavobacterium 976|Bacteroidetes G hydrolase family 92 - - - - - - - - - - - - Glyco_hydro_92 DYD3_k127_2007654_0 926549.KI421517_gene1653 0.0 1299.0 COG3387@1|root,COG3387@2|Bacteria,4PKWH@976|Bacteroidetes,47YI3@768503|Cytophagia 976|Bacteroidetes G Bacterial alpha-L-rhamnosidase C-terminal domain - - 3.2.1.40 ko:K05989 - - - - ko00000,ko01000 - - - Bac_rhamnosid,Bac_rhamnosid6H,Bac_rhamnosid_C,Bac_rhamnosid_N DYD3_k127_2007654_2 504472.Slin_4697 4.825e-53 191.0 COG0607@1|root,COG1996@1|root,COG0607@2|Bacteria,COG1996@2|Bacteria,4PIDM@976|Bacteroidetes,47X19@768503|Cytophagia 976|Bacteroidetes P Rhodanese Homology Domain - - - - - - - - - - - - Rhodanese DYD3_k127_2007654_3 1460635.JCM19038_3729 4.135e-28 117.0 COG0141@1|root,COG0141@2|Bacteria,1TPAW@1239|Firmicutes,4H9XK@91061|Bacilli 91061|Bacilli E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine hisD - 1.1.1.23,1.1.1.308 ko:K00013,ko:K15509 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01158,R01163,R03012 RC00099,RC00242,RC00463 ko00000,ko00001,ko00002,ko01000 - - - Histidinol_dh DYD3_k127_203046_2 926549.KI421517_gene2913 1.808e-50 181.0 COG0079@1|root,COG0079@2|Bacteria,4NEW8@976|Bacteroidetes,47M27@768503|Cytophagia 976|Bacteroidetes E PFAM Aminotransferase class I and II - - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_203046_0 926549.KI421517_gene2914 1.904e-107 359.0 2DB91@1|root,2Z7TQ@2|Bacteria,4NJ03@976|Bacteroidetes,47NSH@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - Hint DYD3_k127_203046_1 700598.Niako_1511 5.701e-99 324.0 COG2518@1|root,COG2518@2|Bacteria,4NFCU@976|Bacteroidetes,1IQ1X@117747|Sphingobacteriia 976|Bacteroidetes O Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins pcm - 2.1.1.77 ko:K00573 - - - - ko00000,ko01000 - - - PCMT DYD3_k127_204132_0 700598.Niako_5486 0.0 1084.0 COG2373@1|root,COG2373@2|Bacteria,4NG2S@976|Bacteroidetes,1IQ4C@117747|Sphingobacteriia 976|Bacteroidetes Q COG2373 Large extracellular alpha-helical protein - - - - - - - - - - - - Plug DYD3_k127_2041487_4 234267.Acid_5193 4.317e-68 237.0 COG0500@1|root,COG2226@2|Bacteria,3Y5GM@57723|Acidobacteria 57723|Acidobacteria Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_25 DYD3_k127_2041487_5 388413.ALPR1_16853 6.281e-44 166.0 COG1765@1|root,COG1765@2|Bacteria 2|Bacteria O OsmC-like protein - - - - - - - - - - - - OsmC DYD3_k127_2041487_0 700598.Niako_5525 7.434e-302 934.0 COG1409@1|root,COG1520@1|root,COG1409@2|Bacteria,COG1520@2|Bacteria,4NFA9@976|Bacteroidetes,1IPWE@117747|Sphingobacteriia 976|Bacteroidetes S PQQ enzyme repeat - - - - - - - - - - - - Metallophos,PQQ,PQQ_2,PQQ_3 DYD3_k127_2041487_6 926562.Oweho_2898 7.624e-41 158.0 29F7N@1|root,3025B@2|Bacteria,4NNR8@976|Bacteroidetes,1I26I@117743|Flavobacteriia,2PBTS@246874|Cryomorphaceae 976|Bacteroidetes S serine protease - - - - - - - - - - - - NfeD DYD3_k127_2041487_1 1237149.C900_01867 9.032e-210 660.0 COG2268@1|root,COG2268@2|Bacteria,4NIH3@976|Bacteroidetes,47TCM@768503|Cytophagia 976|Bacteroidetes S prohibitin homologues yqiK - - ko:K07192 ko04910,map04910 - - - ko00000,ko00001,ko03036,ko04131,ko04147 - - - Band_7,Flot DYD3_k127_2041487_3 700598.Niako_1120 1.911e-83 284.0 COG1670@1|root,COG1670@2|Bacteria,4NZC1@976|Bacteroidetes 976|Bacteroidetes J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - - - - - - - - - - FR47 DYD3_k127_2041487_2 700598.Niako_5527 1.518e-138 445.0 COG0382@1|root,COG0382@2|Bacteria,4NK26@976|Bacteroidetes,1IS1A@117747|Sphingobacteriia 976|Bacteroidetes H PFAM UbiA prenyltransferase family - - 2.5.1.74 ko:K02548 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116 R05617,R06858,R10757 RC02935,RC02936,RC03264 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA DYD3_k127_2046547_4 589924.Ferp_0798 3.818e-14 83.0 arCOG02559@1|root,arCOG02559@2157|Archaea,2Y689@28890|Euryarchaeota,24746@183980|Archaeoglobi 183980|Archaeoglobi S by modhmm - - - - - - - - - - - - - DYD3_k127_2046547_2 925409.KI911562_gene1390 1.359e-47 182.0 2F80M@1|root,340E7@2|Bacteria,4P4VX@976|Bacteroidetes,1IYG6@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2046547_5 1121904.ARBP01000002_gene7150 1.831e-06 56.0 COG3291@1|root,COG3291@2|Bacteria,4NJ9V@976|Bacteroidetes,47N8F@768503|Cytophagia 976|Bacteroidetes G Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - - - - - - - - - - CHU_C,PKD DYD3_k127_2046547_0 700598.Niako_6039 4.192e-114 369.0 COG2316@1|root,COG2316@2|Bacteria,4NIAC@976|Bacteroidetes,1IPCJ@117747|Sphingobacteriia 976|Bacteroidetes S Metal dependent phosphohydrolases with conserved 'HD' motif. - - - - - - - - - - - - HD DYD3_k127_2046547_1 489825.LYNGBM3L_44950 2.042e-73 255.0 COG3751@1|root,COG3751@2|Bacteria,1G4YQ@1117|Cyanobacteria,1HF5B@1150|Oscillatoriales 1117|Cyanobacteria O 2OG-Fe(II) oxygenase superfamily - - - - - - - - - - - - 2OG-FeII_Oxy_3 DYD3_k127_2046547_3 313595.P700755_004059 3.924e-44 168.0 2BFRA@1|root,329K3@2|Bacteria,4PPXW@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2080317_1 1144313.PMI10_02665 5.331e-71 250.0 COG0702@1|root,COG0702@2|Bacteria,4NFWH@976|Bacteroidetes,1I01X@117743|Flavobacteriia,2NSR7@237|Flavobacterium 976|Bacteroidetes GM Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_2080317_0 1048983.EL17_06750 1.299e-254 824.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes,47Y7Y@768503|Cytophagia 976|Bacteroidetes H PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2080317_2 743722.Sph21_2769 3.836e-12 68.0 COG3712@1|root,COG3712@2|Bacteria,4NNTM@976|Bacteroidetes,1IVBK@117747|Sphingobacteriia 976|Bacteroidetes PT Domain of unknown function (DUF4974) - - - - - - - - - - - - DUF4974,FecR DYD3_k127_2086908_1 485918.Cpin_6289 1.027e-93 314.0 COG1595@1|root,COG1595@2|Bacteria,4NMK4@976|Bacteroidetes,1ISCY@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_2086908_4 1233950.IW22_06795 1.455e-36 146.0 COG0251@1|root,COG0251@2|Bacteria,4NV61@976|Bacteroidetes,1I5YT@117743|Flavobacteriia,3ZS5T@59732|Chryseobacterium 976|Bacteroidetes J Endoribonuclease L-PSP - - - - - - - - - - - - Ribonuc_L-PSP DYD3_k127_2086908_5 1121889.AUDM01000002_gene262 6.609e-18 86.0 COG3224@1|root,COG3224@2|Bacteria 2|Bacteria - - - - - ko:K09932 - - - - ko00000 - - - ABM DYD3_k127_2086908_3 485918.Cpin_6288 4.506e-52 189.0 COG2128@1|root,COG2128@2|Bacteria,4NQI7@976|Bacteroidetes,1ISTM@117747|Sphingobacteriia 976|Bacteroidetes O Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - - - - - - - - - - CMD DYD3_k127_2086908_0 760192.Halhy_4899 9.286e-161 511.0 COG3867@1|root,COG3867@2|Bacteria,4NI3G@976|Bacteroidetes,1IQD1@117747|Sphingobacteriia 976|Bacteroidetes G PFAM glycosyl hydrolase 53 ganB - 3.2.1.89 ko:K01224 - - - - ko00000,ko01000 - - - Glyco_hydro_53 DYD3_k127_2086908_2 1270196.JCKI01000009_gene3309 1.18e-79 271.0 COG3934@1|root,COG3934@2|Bacteria,4NFVS@976|Bacteroidetes,1IRA5@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - - - - - - - - - - Cellulase DYD3_k127_2094486_2 485918.Cpin_5156 4.068e-45 166.0 COG4297@1|root,COG4297@2|Bacteria,4NNG0@976|Bacteroidetes,1ISDM@117747|Sphingobacteriia 976|Bacteroidetes S Cupin - - - - - - - - - - - - Cupin_1,Cupin_2 DYD3_k127_2094486_1 1408813.AYMG01000019_gene1705 6.454e-105 348.0 COG4221@1|root,COG4221@2|Bacteria,4NF39@976|Bacteroidetes,1J0HX@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the short-chain dehydrogenases reductases (SDR) family - - - - - - - - - - - - adh_short DYD3_k127_2094486_0 1185876.BN8_03150 1.064e-128 415.0 COG2207@1|root,COG2207@2|Bacteria,4NEHD@976|Bacteroidetes,47KBW@768503|Cytophagia 976|Bacteroidetes K Transcriptional regulator, AraC family - - - - - - - - - - - - HTH_18 DYD3_k127_2121191_0 743722.Sph21_2610 1.076e-232 732.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INWS@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_212328_3 700598.Niako_1537 9.564e-45 164.0 COG0156@1|root,COG0156@2|Bacteria,4NEXI@976|Bacteroidetes,1IRHF@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Aminotransferase class I and II bioF - 2.3.1.29,2.3.1.47 ko:K00639,ko:K00652 ko00260,ko00780,ko01100,map00260,map00780,map01100 M00123,M00573,M00577 R00371,R03210,R10124 RC00004,RC00039,RC00394,RC02725 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_212328_2 700598.Niako_1538 1.462e-58 207.0 COG1917@1|root,COG1917@2|Bacteria 2|Bacteria L Cupin 2, conserved barrel domain protein - - 5.3.1.15 ko:K09988 ko00040,map00040 - R01898 RC00516 ko00000,ko00001,ko01000 - - - Cupin_2,Cupin_7 DYD3_k127_212328_0 700598.Niako_1539 0.0 1108.0 COG2366@1|root,COG2366@2|Bacteria,4NEIX@976|Bacteroidetes,1IPU7@117747|Sphingobacteriia 976|Bacteroidetes S COG2366 Protein related to penicillin acylase - - 3.5.1.11 ko:K01434 ko00311,ko01130,map00311,map01130 - R02170 RC00166,RC00328 ko00000,ko00001,ko01000,ko01002 - - - Penicil_amidase DYD3_k127_212328_4 1123248.KB893318_gene4192 6.893e-27 113.0 2DTGN@1|root,33K97@2|Bacteria,4NZIF@976|Bacteroidetes,1IU43@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_212328_1 485918.Cpin_3734 3.87e-275 870.0 COG1470@1|root,COG1470@2|Bacteria,4NFPN@976|Bacteroidetes,1IPAV@117747|Sphingobacteriia 976|Bacteroidetes S CarboxypepD_reg-like domain - - - - - - - - - - - - CarbopepD_reg_2 DYD3_k127_2124689_1 700598.Niako_0401 3.413e-53 189.0 COG2911@1|root,COG2911@2|Bacteria,4NF7F@976|Bacteroidetes,1IPAB@117747|Sphingobacteriia 976|Bacteroidetes S TamB, inner membrane protein subunit of TAM complex - - - - - - - - - - - - TamB DYD3_k127_2124689_0 700598.Niako_0400 1.006e-235 733.0 COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,4NF6I@976|Bacteroidetes,1INQM@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ribBA - 3.5.4.25,4.1.99.12 ko:K14652 ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110 M00125,M00840 R00425,R07281 RC00293,RC01792,RC01815,RC02504 ko00000,ko00001,ko00002,ko01000 - - - DHBP_synthase,GTP_cyclohydro2 DYD3_k127_2124689_2 1122605.KB893632_gene4357 5.65e-34 137.0 COG1629@1|root,COG4771@2|Bacteria,4NF66@976|Bacteroidetes,1IP8M@117747|Sphingobacteriia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarboxypepD_reg,TonB_dep_Rec DYD3_k127_2127584_2 700598.Niako_5864 5.968e-132 428.0 COG1807@1|root,COG1807@2|Bacteria,4PKJX@976|Bacteroidetes,1IX43@117747|Sphingobacteriia 976|Bacteroidetes M Protein of unknown function (DUF2723) - - - - - - - - - - - - DUF2723 DYD3_k127_2127584_0 700598.Niako_0547 6.995e-205 661.0 COG1529@1|root,COG1529@2|Bacteria,4NFFU@976|Bacteroidetes,1IR1H@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Aldehyde oxidase xanthine dehydrogenase, molybdopterin binding - - 1.3.99.16 ko:K07303 - - - - ko00000,ko01000 - - - Ald_Xan_dh_C2 DYD3_k127_2127584_1 926549.KI421517_gene4135 3.305e-197 619.0 COG2730@1|root,COG2730@2|Bacteria,4NGAC@976|Bacteroidetes,47MSS@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 5 (cellulase A) family - - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - Cellulase DYD3_k127_2127584_3 929556.Solca_1368 1.143e-52 192.0 COG0624@1|root,COG0624@2|Bacteria,4NEHJ@976|Bacteroidetes,1IS2Y@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase dimerisation domain - - - ko:K13049 - - - - ko00000,ko01000,ko01002 - - - M20_dimer,Peptidase_M20,Peptidase_M28 DYD3_k127_2129478_0 700598.Niako_3686 4.182e-280 865.0 COG0466@1|root,COG0466@2|Bacteria,4NE1G@976|Bacteroidetes,1IQDQ@117747|Sphingobacteriia 976|Bacteroidetes O ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner lon - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA,LON_substr_bdg,Lon_C DYD3_k127_21316_0 926549.KI421517_gene3363 8.826e-154 494.0 COG3191@1|root,COG3191@2|Bacteria,4NGDT@976|Bacteroidetes,47K9S@768503|Cytophagia 976|Bacteroidetes EQ Peptidase family S58 - - 3.4.11.19 ko:K01266 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S58 DYD3_k127_21316_2 1121012.AUKX01000032_gene687 1.655e-18 91.0 COG3577@1|root,COG3577@2|Bacteria,4NNI0@976|Bacteroidetes,1I1Z6@117743|Flavobacteriia,23H7C@178469|Arenibacter 976|Bacteroidetes S gag-polyprotein putative aspartyl protease - - - - - - - - - - - - Asp_protease_2 DYD3_k127_21316_3 1123277.KB893201_gene6424 2.459e-10 62.0 COG0262@1|root,COG0262@2|Bacteria,4NJIQ@976|Bacteroidetes,47PHT@768503|Cytophagia 976|Bacteroidetes H RibD C-terminal domain - - 1.5.1.3 ko:K00287 ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523 M00126,M00840 R00936,R00937,R00939,R00940,R02235,R02236,R11765 RC00109,RC00110,RC00158 ko00000,ko00001,ko00002,ko01000 - - - RibD_C DYD3_k127_2191128_0 700598.Niako_6867 2.527e-272 841.0 COG0473@1|root,COG0473@2|Bacteria,4NGUA@976|Bacteroidetes 976|Bacteroidetes CE Isocitrate isopropylmalate dehydrogenase - - 1.1.1.42,1.1.1.85 ko:K00031,ko:K00052 ko00020,ko00290,ko00480,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00290,map00480,map00660,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 M00009,M00010,M00173,M00432,M00535,M00740 R00267,R00268,R00994,R01899,R04426,R10052 RC00001,RC00084,RC00114,RC00417,RC00626,RC02801,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh DYD3_k127_2191128_1 1380384.JADN01000003_gene921 3.151e-28 115.0 COG3369@1|root,COG3592@1|root,COG3369@2|Bacteria,COG3592@2|Bacteria,4NVG3@976|Bacteroidetes,1I5MP@117743|Flavobacteriia 976|Bacteroidetes S Divergent 4Fe-4S mono-cluster - - - - - - - - - - - - Fer4_19,zf-CDGSH DYD3_k127_2193190_0 700598.Niako_2169 5.112e-160 510.0 COG1207@1|root,COG1207@2|Bacteria,4NDZP@976|Bacteroidetes,1IP3D@117747|Sphingobacteriia 976|Bacteroidetes M Sugar nucleotidyl transferase glmU - - - - - - - - - - - NTP_transf_4 DYD3_k127_2193190_1 700598.Niako_2168 1.386e-128 414.0 COG0149@1|root,COG0149@2|Bacteria,4NE2F@976|Bacteroidetes,1IPGF@117747|Sphingobacteriia 976|Bacteroidetes G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) tpiA GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01015 RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - TIM DYD3_k127_2198783_2 700598.Niako_2927 5.713e-78 265.0 COG0204@1|root,COG0204@2|Bacteria,4NG5R@976|Bacteroidetes,1ISRE@117747|Sphingobacteriia 976|Bacteroidetes I Phosphate acyltransferases plsC - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase DYD3_k127_2198783_6 700598.Niako_2928 8.927e-33 131.0 2EWYR@1|root,346M6@2|Bacteria,4P5DU@976|Bacteroidetes,1IZAP@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4258) - - - - - - - - - - - - DUF4258 DYD3_k127_2198783_1 700598.Niako_2929 8.148e-227 707.0 COG0621@1|root,COG0621@2|Bacteria,4NE0R@976|Bacteroidetes,1INWM@117747|Sphingobacteriia 976|Bacteroidetes J 2-methylthioadenine synthetase yqeV - 2.8.4.5 ko:K18707 - - R10649 RC00003,RC03221 ko00000,ko01000,ko03016 - - - Radical_SAM,UPF0004 DYD3_k127_2198783_3 1122605.KB893645_gene1225 3.612e-77 265.0 COG2818@1|root,COG2818@2|Bacteria,4NGRC@976|Bacteroidetes,1IQD8@117747|Sphingobacteriia 976|Bacteroidetes L Methyladenine glycosylase - - 3.2.2.20 ko:K01246 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Adenine_glyco DYD3_k127_2198783_0 700598.Niako_2930 1.096e-229 719.0 COG2197@1|root,COG2202@1|root,COG4585@1|root,COG2197@2|Bacteria,COG2202@2|Bacteria,COG4585@2|Bacteria,4NK7B@976|Bacteroidetes,1IW3P@117747|Sphingobacteriia 976|Bacteroidetes T signal transduction histidine kinase - - 2.7.13.3 ko:K07675 ko02020,map02020 M00473 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA_3,PAS_3,PAS_4,PAS_9,Response_reg DYD3_k127_2198783_4 700598.Niako_2931 1.697e-50 183.0 COG0784@1|root,COG0784@2|Bacteria,4NSX5@976|Bacteroidetes,1IZ5I@117747|Sphingobacteriia 976|Bacteroidetes T PFAM response regulator receiver - - - - - - - - - - - - Response_reg DYD3_k127_2198783_5 700598.Niako_2992 2.92e-49 177.0 COG2127@1|root,COG2127@2|Bacteria,4NS8R@976|Bacteroidetes,1IUIV@117747|Sphingobacteriia 976|Bacteroidetes S Clp protease adaptor protein ClpS clpS - - ko:K06891 - - - - ko00000 - - - ClpS DYD3_k127_2219123_5 1121481.AUAS01000016_gene2625 1.485e-86 290.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,47JJJ@768503|Cytophagia 976|Bacteroidetes P TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_2219123_3 1121481.AUAS01000016_gene2625 2.209e-231 726.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,47JJJ@768503|Cytophagia 976|Bacteroidetes P TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_2219123_1 1121481.AUAS01000016_gene2624 8.045e-298 924.0 COG1435@1|root,COG1435@2|Bacteria,4NE0A@976|Bacteroidetes 976|Bacteroidetes F PFAM RagB SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_2219123_0 1121481.AUAS01000016_gene2623 0.0 1060.0 COG2010@1|root,COG2010@2|Bacteria,4NEPV@976|Bacteroidetes,47JYA@768503|Cytophagia 976|Bacteroidetes C Planctomycete cytochrome C - - - - - - - - - - - - PSCyt1,PSCyt2,PSD1 DYD3_k127_2219123_2 1122605.KB893639_gene3044 6.776e-269 833.0 COG4102@1|root,COG4102@2|Bacteria,4NE73@976|Bacteroidetes,1IQYR@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD3_k127_2219123_4 1122605.KB893639_gene3043 5.451e-162 516.0 COG3391@1|root,COG3391@2|Bacteria,4NH92@976|Bacteroidetes,1IQ1F@117747|Sphingobacteriia 976|Bacteroidetes S NHL repeat containing protein - - - - - - - - - - - - DUF5128 DYD3_k127_2219123_6 471854.Dfer_1593 4.469e-25 108.0 COG4244@1|root,COG4244@2|Bacteria,4PN2J@976|Bacteroidetes,47Y6H@768503|Cytophagia 976|Bacteroidetes S Chitobiase/beta-hexosaminidase C-terminal domain - - - - - - - - - - - - CHB_HEX_C_1,F5_F8_type_C,Fn3_assoc,PSCyt1 DYD3_k127_2249875_1 700598.Niako_5610 6.217e-123 402.0 COG0697@1|root,COG0697@2|Bacteria,4NH9M@976|Bacteroidetes,1ISD3@117747|Sphingobacteriia 976|Bacteroidetes EG PFAM EamA-like transporter family - - - - - - - - - - - - EamA DYD3_k127_2249875_0 485918.Cpin_7219 2.742e-225 717.0 COG1629@1|root,COG4771@2|Bacteria,4NET0@976|Bacteroidetes,1IP2C@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - ko:K16089 - - - - ko00000,ko02000 1.B.14.1,1.B.14.10 - - CarbopepD_reg_2,OMP_b-brl_3,Plug,TonB_dep_Rec DYD3_k127_2249875_2 1123277.KB893179_gene3091 2.196e-105 352.0 2CD2G@1|root,2Z833@2|Bacteria,4NHAR@976|Bacteroidetes,47NE7@768503|Cytophagia 976|Bacteroidetes S HmuY protein - - - - - - - - - - - - HmuY DYD3_k127_2249875_3 1313301.AUGC01000004_gene2310 1.047e-31 126.0 2CCG4@1|root,2Z873@2|Bacteria,4NEW2@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2253414_6 388413.ALPR1_04698 4.486e-22 99.0 COG1001@1|root,COG1001@2|Bacteria,4NFD9@976|Bacteroidetes,47KX0@768503|Cytophagia 976|Bacteroidetes F Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family ade - 3.5.4.2 ko:K01486 ko00230,ko01100,map00230,map01100 - R01244 RC00477 ko00000,ko00001,ko01000 - - - Adenine_deam_C,Amidohydro_1 DYD3_k127_2253414_3 700598.Niako_7024 4.028e-67 237.0 COG2834@1|root,COG2834@2|Bacteria,4NHV3@976|Bacteroidetes,1IZ7F@117747|Sphingobacteriia 976|Bacteroidetes M Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - - - - - - - - - - LolA_like DYD3_k127_2253414_1 700598.Niako_7025 0.0 1089.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,1IUYM@117747|Sphingobacteriia 976|Bacteroidetes G Galactose mutarotase-like - - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - DUF4968,DUF5110,Esterase,Gal_mutarotas_2,Glyco_hydro_31 DYD3_k127_2253414_0 925409.KI911562_gene1379 0.0 1560.0 COG4447@1|root,COG4447@2|Bacteria,4NESU@976|Bacteroidetes,1IUT7@117747|Sphingobacteriia 976|Bacteroidetes S Sortilin, neurotensin receptor 3, - - - - - - - - - - - - Sortilin-Vps10 DYD3_k127_2253414_2 700598.Niako_7026 1.265e-130 419.0 COG0336@1|root,COG0336@2|Bacteria,4NF2Q@976|Bacteroidetes,1IQ54@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the RNA methyltransferase TrmD family trmD GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 ko:K00554 - - R00597 RC00003,RC00334 ko00000,ko01000,ko03016 - - - tRNA_m1G_MT DYD3_k127_2253414_5 1121481.AUAS01000005_gene1918 3.989e-25 106.0 COG0598@1|root,COG0598@2|Bacteria,4NG3C@976|Bacteroidetes,47MPJ@768503|Cytophagia 976|Bacteroidetes P CorA-like Mg2+ transporter protein corA - - ko:K03284 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3 - - CorA DYD3_k127_2253414_4 700598.Niako_7027 2.542e-60 210.0 COG1188@1|root,COG1188@2|Bacteria,4NP8I@976|Bacteroidetes,1ISBI@117747|Sphingobacteriia 976|Bacteroidetes J COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) hslR - - ko:K04762 - - - - ko00000,ko03110 - - - S4 DYD3_k127_2253505_1 1408813.AYMG01000023_gene2092 1.31e-18 86.0 COG1506@1|root,COG1506@2|Bacteria,4NE60@976|Bacteroidetes,1IRKN@117747|Sphingobacteriia 976|Bacteroidetes E Prolyl oligopeptidase family - - - - - - - - - - - - Peptidase_S9 DYD3_k127_2253505_0 1123234.AUKI01000019_gene467 1.581e-149 481.0 28I9R@1|root,2Z8CE@2|Bacteria,4NNRK@976|Bacteroidetes,1I2Q7@117743|Flavobacteriia 976|Bacteroidetes S Lipid A 3-O-deacylase (PagL) - - - - - - - - - - - - PagL DYD3_k127_2253505_2 1408433.JHXV01000008_gene54 9.081e-06 50.0 arCOG08211@1|root,2ZBM3@2|Bacteria,4P2GT@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2277502_3 700598.Niako_5670 2.961e-27 111.0 COG0663@1|root,COG0663@2|Bacteria,4NG6R@976|Bacteroidetes,1IS18@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG0663 Carbonic anhydrase acetyltransferase isoleucine patch superfamily dapH - - - - - - - - - - - Hexapep DYD3_k127_2277502_0 700598.Niako_5669 5.133e-194 614.0 COG4992@1|root,COG4992@2|Bacteria,4NFMC@976|Bacteroidetes,1IQCC@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family argD - 2.6.1.11,2.6.1.17 ko:K00821 ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00028,M00845 R02283,R04475 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 DYD3_k127_2277502_2 143224.JQMD01000002_gene3435 4.725e-68 235.0 COG0251@1|root,COG0251@2|Bacteria,4NPF9@976|Bacteroidetes,1I1J9@117743|Flavobacteriia 976|Bacteroidetes J endoribonuclease L-PSP - - - - - - - - - - - - YjgF_endoribonc DYD3_k127_2277502_1 1305737.JAFX01000001_gene2438 7.625e-70 242.0 COG0823@1|root,COG1228@1|root,COG0823@2|Bacteria,COG1228@2|Bacteria,4PM8I@976|Bacteroidetes,47KK7@768503|Cytophagia 976|Bacteroidetes QU Amidohydrolase family - - - - - - - - - - - - Amidohydro_1,PD40 DYD3_k127_2280096_0 700598.Niako_4521 1.575e-299 927.0 COG2183@1|root,COG2183@2|Bacteria,4NETD@976|Bacteroidetes,1IPB3@117747|Sphingobacteriia 976|Bacteroidetes K Tex-like protein N-terminal domain yhgF - - ko:K06959 - - - - ko00000 - - - HHH_3,S1,Tex_N,Tex_YqgF DYD3_k127_2280096_1 700598.Niako_4522 3.444e-85 287.0 COG1073@1|root,COG1073@2|Bacteria,4NFVJ@976|Bacteroidetes,1J0PC@117747|Sphingobacteriia 976|Bacteroidetes S Alpha beta hydrolase - - - - - - - - - - - - UPF0227 DYD3_k127_2280096_2 700598.Niako_4523 3.007e-46 168.0 COG0031@1|root,COG3620@1|root,COG0031@2|Bacteria,COG3620@2|Bacteria,4NDZ9@976|Bacteroidetes,1IQU6@117747|Sphingobacteriia 976|Bacteroidetes E Cystathionine beta-synthase - - 4.2.1.22 ko:K01697 ko00260,ko00270,ko01100,ko01130,ko01230,map00260,map00270,map01100,map01130,map01230 M00035,M00338 R00891,R01290,R04942 RC00056,RC00069,RC00256,RC00489,RC01246 ko00000,ko00001,ko00002,ko01000 - - - CBS,PALP DYD3_k127_228168_2 1279009.ADICEAN_01702 3.081e-67 231.0 COG4914@1|root,COG4914@2|Bacteria,4NJHM@976|Bacteroidetes,47TQW@768503|Cytophagia 976|Bacteroidetes S Nucleotidyl transferase of unknown function (DUF2204) - - - - - - - - - - - - DUF2204,NTP_transf_5 DYD3_k127_228168_0 1123248.KB893318_gene4195 2.473e-121 392.0 COG2129@1|root,COG2129@2|Bacteria,4NH2S@976|Bacteroidetes,1IQCI@117747|Sphingobacteriia 976|Bacteroidetes S Calcineurin-like phosphoesterase superfamily domain - - - - - - - - - - - - Metallophos DYD3_k127_228168_1 485918.Cpin_3935 5.041e-107 360.0 COG2989@1|root,COG2989@2|Bacteria,4NH3J@976|Bacteroidetes,1INPY@117747|Sphingobacteriia 976|Bacteroidetes S L,D-transpeptidase catalytic domain - - - ko:K21470 - - - - ko00000,ko01002,ko01011 - - - PG_binding_1,YkuD DYD3_k127_2295593_0 700598.Niako_5667 0.0 1166.0 COG4775@1|root,COG4775@2|Bacteria,4NDYT@976|Bacteroidetes,1IPK5@117747|Sphingobacteriia 976|Bacteroidetes M CarboxypepD_reg-like domain - - - - - - - - - - - - CarbopepD_reg_2 DYD3_k127_2295593_2 700598.Niako_5665 2.83e-89 301.0 COG3127@1|root,COG3127@2|Bacteria,4NN8S@976|Bacteroidetes 976|Bacteroidetes Q membrane - - - - - - - - - - - - - DYD3_k127_2295593_3 700598.Niako_5664 1.086e-52 186.0 COG1846@1|root,COG1846@2|Bacteria,4PKFS@976|Bacteroidetes,1J0KN@117747|Sphingobacteriia 976|Bacteroidetes K Winged helix DNA-binding domain - - - - - - - - - - - - HTH_34 DYD3_k127_2295593_1 700598.Niako_5662 1.355e-196 615.0 COG1032@1|root,COG1032@2|Bacteria,4NFPW@976|Bacteroidetes 976|Bacteroidetes C radical SAM domain protein - - - - - - - - - - - - B12-binding,DUF4070,Radical_SAM DYD3_k127_2298725_0 760192.Halhy_6469 0.0 1035.0 COG3408@1|root,COG3408@2|Bacteria,4NESP@976|Bacteroidetes,1IQ5X@117747|Sphingobacteriia 976|Bacteroidetes G Bacterial alpha-L-rhamnosidase C-terminal domain - - 3.2.1.40 ko:K05989 - - - - ko00000,ko01000 - - - Bac_rhamnosid,Bac_rhamnosid6H,Bac_rhamnosid_C,Bac_rhamnosid_N DYD3_k127_2298725_1 485918.Cpin_2704 3.232e-82 276.0 COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,4NFK0@976|Bacteroidetes,1IQUR@117747|Sphingobacteriia 976|Bacteroidetes C Pyrrolo-quinoline quinone - - 1.1.5.2 ko:K00117 ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130 - R06620 RC00066 ko00000,ko00001,ko01000 - - - Cytochrome_CBB3,PQQ,PQQ_2 DYD3_k127_2314230_5 1434325.AZQN01000001_gene574 3.018e-59 209.0 2976S@1|root,2ZUEM@2|Bacteria,4NPEH@976|Bacteroidetes,47Q3C@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2314230_7 491205.JARQ01000006_gene2694 1.044e-27 117.0 COG1672@1|root,COG1672@2|Bacteria,4PHWK@976|Bacteroidetes,1IN1D@117743|Flavobacteriia,3ZTRG@59732|Chryseobacterium 976|Bacteroidetes S Electron transfer DM13 - - - - - - - - - - - - DM13 DYD3_k127_2314230_4 700598.Niako_2213 5.679e-63 221.0 COG2353@1|root,COG2353@2|Bacteria,4NT3W@976|Bacteroidetes,1IUC5@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the UPF0312 family - - - - - - - - - - - - YceI DYD3_k127_2314230_6 1434325.AZQN01000001_gene573 3.898e-40 154.0 COG2318@1|root,COG2318@2|Bacteria,4NSP0@976|Bacteroidetes,47R5Z@768503|Cytophagia 976|Bacteroidetes S DinB family - - - - - - - - - - - - DinB,DinB_2 DYD3_k127_2314230_1 700598.Niako_2211 1.486e-106 349.0 COG0189@1|root,COG0189@2|Bacteria,4PN9C@976|Bacteroidetes 976|Bacteroidetes HJ Transport and Golgi organisation 2 - - - - - - - - - - - - TANGO2 DYD3_k127_2314230_0 700598.Niako_2210 1.117e-171 544.0 COG0189@1|root,COG0189@2|Bacteria,4NH4U@976|Bacteroidetes,1IX9C@117747|Sphingobacteriia 976|Bacteroidetes HJ ligase activity - - - - - - - - - - - - RimK DYD3_k127_2314230_2 700598.Niako_2209 7.132e-92 306.0 COG1280@1|root,COG1280@2|Bacteria,4NUV7@976|Bacteroidetes,1IUGQ@117747|Sphingobacteriia 976|Bacteroidetes E PFAM LysE type translocator - - - - - - - - - - - - LysE DYD3_k127_2314230_3 700598.Niako_2208 3.477e-72 251.0 28M3Z@1|root,32ZEY@2|Bacteria,4NUZS@976|Bacteroidetes,1IU2K@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2319052_2 929703.KE386491_gene2442 1.957e-30 124.0 COG1680@1|root,COG1680@2|Bacteria,4NHW2@976|Bacteroidetes,47SIR@768503|Cytophagia 976|Bacteroidetes V Beta-lactamase - - - - - - - - - - - - Abhydrolase_1,Beta-lactamase DYD3_k127_2319052_1 743722.Sph21_2173 3.765e-48 177.0 COG2323@1|root,COG2323@2|Bacteria,4NNDP@976|Bacteroidetes,1IUPV@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF421) - - - - - - - - - - - - DUF421 DYD3_k127_2319052_3 743722.Sph21_2172 2.273e-23 106.0 2AGIH@1|root,316R8@2|Bacteria,4P70D@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2319052_0 760192.Halhy_4968 4.033e-86 293.0 COG0457@1|root,COG1680@1|root,COG0457@2|Bacteria,COG1680@2|Bacteria,4NGKK@976|Bacteroidetes,1IRV5@117747|Sphingobacteriia 976|Bacteroidetes V COG1680 Beta-lactamase class C and other penicillin binding - - - - - - - - - - - - Beta-lactamase,DUF3471,TPR_2 DYD3_k127_233233_1 700598.Niako_6560 2.393e-150 479.0 COG1853@1|root,COG1853@2|Bacteria,4NF4H@976|Bacteroidetes,1IQ9R@117747|Sphingobacteriia 976|Bacteroidetes S flavin reductase - - - - - - - - - - - - Flavin_Reduct DYD3_k127_233233_4 665959.HMPREF1013_05382 2.757e-17 95.0 COG3428@1|root,COG3428@2|Bacteria,1TSRJ@1239|Firmicutes,4HB8P@91061|Bacilli,1ZBIF@1386|Bacillus 91061|Bacilli S Membrane ydbT - - ko:K08981 - - - - ko00000 - - - bPH_2 DYD3_k127_233233_3 1267211.KI669560_gene1928 4.911e-30 125.0 COG0346@1|root,COG3402@1|root,COG0346@2|Bacteria,COG3402@2|Bacteria,4NQCJ@976|Bacteroidetes 976|Bacteroidetes E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - - - - - - - - - - Glyoxalase DYD3_k127_233233_0 700598.Niako_6559 2.264e-286 884.0 COG1190@1|root,COG1190@2|Bacteria,4NDZN@976|Bacteroidetes,1IQRC@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class-II aminoacyl-tRNA synthetase family lysS - 6.1.1.6 ko:K04567 ko00970,map00970 M00359,M00360 R03658 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DUF4332,tRNA-synt_2,tRNA_anti-codon DYD3_k127_233233_2 1034807.FBFL15_1399 4.82e-36 142.0 2DZKQ@1|root,32VDA@2|Bacteria,4NSEZ@976|Bacteroidetes,1IBH6@117743|Flavobacteriia,2NXU0@237|Flavobacterium 976|Bacteroidetes S Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - - DYD3_k127_233574_1 926549.KI421517_gene3078 1.218e-174 571.0 COG4993@1|root,COG4993@2|Bacteria,4NFK0@976|Bacteroidetes,47N4C@768503|Cytophagia 976|Bacteroidetes C PQQ-like domain - - 1.1.5.2 ko:K00117 ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130 - R06620 RC00066 ko00000,ko00001,ko01000 - - - Cytochrome_CBB3,PQQ,PQQ_2 DYD3_k127_233574_3 1233950.IW22_20225 5.265e-05 51.0 2E0E1@1|root,32W0P@2|Bacteria,4NU86@976|Bacteroidetes,1IA3Q@117743|Flavobacteriia,3ZRZ3@59732|Chryseobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_233574_2 1492737.FEM08_21720 2.974e-24 113.0 2FD2D@1|root,3454V@2|Bacteria,4P66V@976|Bacteroidetes,1IDWK@117743|Flavobacteriia,2NZD3@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_233574_0 1123248.KB893386_gene1945 8.133e-269 835.0 COG2382@1|root,COG3386@1|root,COG2382@2|Bacteria,COG3386@2|Bacteria,4NK15@976|Bacteroidetes,1IWMS@117747|Sphingobacteriia 976|Bacteroidetes GP Arylesterase - - - ko:K07214 - - - - ko00000 - - - Esterase,SGL DYD3_k127_2336356_1 1124780.ANNU01000013_gene3786 4.659e-74 265.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2336356_0 1123248.KB893338_gene2304 1.496e-106 356.0 COG3595@1|root,COG3595@2|Bacteria,4NJCC@976|Bacteroidetes,1IRTV@117747|Sphingobacteriia 976|Bacteroidetes S Putative adhesin - - - - - - - - - - - - DUF4097 DYD3_k127_2336356_2 1121481.AUAS01000017_gene2494 1.102e-23 104.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47MUE@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_2339366_0 1469607.KK073768_gene3537 9.633e-134 455.0 COG0457@1|root,COG0457@2|Bacteria,1G1PZ@1117|Cyanobacteria 1117|Cyanobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_8 DYD3_k127_2342208_3 700598.Niako_4142 2.442e-71 245.0 COG1947@1|root,COG1947@2|Bacteria,4NGFC@976|Bacteroidetes,1IPQ2@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol ispE GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 ko:K00919 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05634 RC00002,RC01439 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD3_k127_2342208_0 700598.Niako_4143 1.058e-210 660.0 COG4992@1|root,COG4992@2|Bacteria,4NE93@976|Bacteroidetes,1INU3@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family rocD - 2.6.1.13 ko:K00819 ko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130 - R00667 RC00006,RC00062 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_3 DYD3_k127_2342208_1 700598.Niako_4325 1.882e-148 475.0 COG2820@1|root,COG2820@2|Bacteria,4NG5S@976|Bacteroidetes,1INVP@117747|Sphingobacteriia 976|Bacteroidetes F phosphorylase udp - 2.4.2.3 ko:K00757 ko00240,ko00983,ko01100,map00240,map00983,map01100 - R01876,R02484,R08229 RC00063 ko00000,ko00001,ko01000 - - - PNP_UDP_1 DYD3_k127_2342208_2 700598.Niako_4326 5.673e-135 433.0 COG0253@1|root,COG0253@2|Bacteria,4NF26@976|Bacteroidetes,1IP6C@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan dapF GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 ko:K01778 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00527 R02735 RC00302 ko00000,ko00001,ko00002,ko01000 - - - DAP_epimerase DYD3_k127_23519_1 700598.Niako_4737 7.832e-50 181.0 COG3279@1|root,COG3279@2|Bacteria,4NI3K@976|Bacteroidetes 2|Bacteria KT Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_23519_0 700598.Niako_5817 1.186e-184 584.0 COG0076@1|root,COG0076@2|Bacteria,4NFUP@976|Bacteroidetes,1IVP1@117747|Sphingobacteriia 976|Bacteroidetes E COGs COG0076 Glutamate decarboxylase and related PLP-dependent protein - - - - - - - - - - - - Pyridoxal_deC DYD3_k127_2354428_4 700598.Niako_3014 6.547e-05 45.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_2354428_1 700598.Niako_3016 1.58e-170 561.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IPPI@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - HATPase_c,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_2354428_3 700598.Niako_3016 2.25e-44 171.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IPPI@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - HATPase_c,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_2354428_2 700598.Niako_3014 7.453e-89 299.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_2354428_0 700598.Niako_3016 3.194e-216 704.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IPPI@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - HATPase_c,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_2362570_1 1380393.JHVP01000022_gene3257 4.323e-42 164.0 COG1131@1|root,COG1131@2|Bacteria,2GN8P@201174|Actinobacteria,4EV93@85013|Frankiales 201174|Actinobacteria V ABC transporter - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_2362570_0 1121373.KB903623_gene2323 2.699e-43 170.0 2A0PG@1|root,30NTS@2|Bacteria,4PB8I@976|Bacteroidetes,47VFB@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2374752_0 485918.Cpin_2573 3.972e-190 611.0 COG3280@1|root,COG3280@2|Bacteria,4PM29@976|Bacteroidetes,1J0MJ@117747|Sphingobacteriia 976|Bacteroidetes G Alpha amylase, catalytic domain - - 5.4.99.15 ko:K06044 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R01824,R09995 - ko00000,ko00001,ko00002,ko01000 - GH13 - Alpha-amylase DYD3_k127_2385999_1 471854.Dfer_1280 7.36e-54 213.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,47XEG@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase,Reg_prop,Y_Y_Y DYD3_k127_2385999_2 1122179.KB890413_gene4732 6.674e-05 53.0 COG1404@1|root,COG1404@2|Bacteria 2|Bacteria O Belongs to the peptidase S8 family - - - - - - - - - - - - B_lectin,DUF5011,PA,PPC,Peptidase_S8 DYD3_k127_2385999_0 1120966.AUBU01000026_gene524 3.281e-103 354.0 COG1262@1|root,COG1262@2|Bacteria,4NKVR@976|Bacteroidetes,47PRM@768503|Cytophagia 976|Bacteroidetes S Sulfatase-modifying factor enzyme 1 - - - - - - - - - - - - FGE-sulfatase DYD3_k127_2388131_2 929713.NIASO_16420 4.314e-23 105.0 COG0526@1|root,COG0526@2|Bacteria,4NS44@976|Bacteroidetes,1IYYE@117747|Sphingobacteriia 976|Bacteroidetes CO Thioredoxin - - - - - - - - - - - - AhpC-TSA,DUF3738 DYD3_k127_2388131_1 1202532.FF52_19875 8.08e-35 138.0 COG0745@1|root,COG0745@2|Bacteria,4NXE8@976|Bacteroidetes,1IIY7@117743|Flavobacteriia,2NWJG@237|Flavobacterium 976|Bacteroidetes T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg DYD3_k127_2388131_0 761193.Runsl_5529 2.256e-257 833.0 COG0642@1|root,COG0745@1|root,COG4251@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG4251@2|Bacteria,4NE3J@976|Bacteroidetes,47JCX@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg DYD3_k127_2390560_0 700598.Niako_0406 0.0 1034.0 COG2866@1|root,COG2866@2|Bacteria,4NEJA@976|Bacteroidetes,1IQWN@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Zinc carboxypeptidase - - - - - - - - - - - - ABC_transp_aux,Peptidase_M14 DYD3_k127_2390963_1 925409.KI911562_gene1403 1.607e-177 557.0 COG0524@1|root,COG0524@2|Bacteria,4NFH8@976|Bacteroidetes,1IRCP@117747|Sphingobacteriia 976|Bacteroidetes G pfkB family carbohydrate kinase - - 2.7.1.45 ko:K00874 ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200 M00061,M00308,M00631 R01541 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - PfkB DYD3_k127_2390963_0 700598.Niako_5295 3.867e-235 731.0 COG1904@1|root,COG1904@2|Bacteria,4NFHS@976|Bacteroidetes,1IQ2E@117747|Sphingobacteriia 976|Bacteroidetes G Glucuronate isomerase uxaC - 5.3.1.12 ko:K01812 ko00040,ko01100,map00040,map01100 M00061,M00631 R01482,R01983 RC00376 ko00000,ko00001,ko00002,ko01000 - - - UxaC DYD3_k127_2393154_1 1121898.Q766_19185 1.739e-65 233.0 COG0366@1|root,COG0366@2|Bacteria,4NEXF@976|Bacteroidetes,1IN89@117743|Flavobacteriia,2NYDF@237|Flavobacterium 976|Bacteroidetes G Alpha amylase, catalytic domain - GO:0000272,GO:0000287,GO:0001871,GO:0003674,GO:0003824,GO:0004553,GO:0004556,GO:0005488,GO:0005509,GO:0005575,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0016020,GO:0016052,GO:0016160,GO:0016787,GO:0016798,GO:0019867,GO:0030246,GO:0030247,GO:0043167,GO:0043169,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0046872,GO:0071704,GO:1901575,GO:2001070 3.2.1.1,3.2.1.133,3.2.1.135,3.2.1.54 ko:K01176,ko:K01208 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R03122,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,BACON,Malt_amylase_C DYD3_k127_2393154_0 1408473.JHXO01000008_gene2710 1.075e-84 291.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,2FN74@200643|Bacteroidia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 31 family - - 3.2.1.177 ko:K01811 - - - - ko00000,ko01000 - GH31 - DUF4968,Gal_mutarotas_2,Glyco_hydro_31 DYD3_k127_23975_3 700598.Niako_0299 2.769e-34 133.0 COG0859@1|root,COG0859@2|Bacteria,4NEPH@976|Bacteroidetes,1INZA@117747|Sphingobacteriia 976|Bacteroidetes M Glycosyl transferase, family 9 - - - ko:K02843 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 DYD3_k127_23975_0 1267211.KI669560_gene2542 4.852e-195 615.0 COG0477@1|root,COG0477@2|Bacteria,4PKN6@976|Bacteroidetes,1J0M5@117747|Sphingobacteriia 976|Bacteroidetes EGP PFAM Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD3_k127_23975_1 700598.Niako_0297 2.244e-120 395.0 COG0586@1|root,COG0586@2|Bacteria,4NMPN@976|Bacteroidetes,1IWBE@117747|Sphingobacteriia 976|Bacteroidetes S SNARE associated Golgi protein - - - ko:K03975 - - - - ko00000 - - - SNARE_assoc DYD3_k127_23975_2 700598.Niako_0296 5.198e-84 280.0 COG1301@1|root,COG1301@2|Bacteria,4NDUU@976|Bacteroidetes,1INWV@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family gltP - - ko:K11102,ko:K11103 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.23.1.1,2.A.23.1.2,2.A.23.1.3,2.A.23.1.6,2.A.23.1.7 - - SDF DYD3_k127_2422611_1 468059.AUHA01000002_gene1002 6.911e-129 421.0 COG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1INMT@117747|Sphingobacteriia 976|Bacteroidetes HP TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2422611_0 468059.AUHA01000002_gene1000 4.833e-271 848.0 COG0642@1|root,COG0745@1|root,COG3292@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NG0B@976|Bacteroidetes 976|Bacteroidetes T Response regulator receiver domain - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_2426595_1 485918.Cpin_5675 1.796e-44 166.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ0T@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2426595_0 1237149.C900_01563 5.408e-159 512.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NTJ@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_243097_0 700598.Niako_5623 2.236e-126 412.0 arCOG09742@1|root,2ZBGR@2|Bacteria,4NRNU@976|Bacteroidetes,1IYTV@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_243097_2 700598.Niako_5622 6.256e-109 355.0 COG0726@1|root,COG0726@2|Bacteria,4NM7D@976|Bacteroidetes,1IRUN@117747|Sphingobacteriia 976|Bacteroidetes G polysaccharide deacetylase pgdA_1 - - - - - - - - - - - Polysacc_deac_1 DYD3_k127_243097_4 700598.Niako_5621 0.0007801 47.0 28M3Z@1|root,32ZEY@2|Bacteria,4NUZS@976|Bacteroidetes,1IU2K@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_243097_1 700598.Niako_5620 7.255e-115 376.0 COG0084@1|root,COG0084@2|Bacteria,4NEVW@976|Bacteroidetes,1INMV@117747|Sphingobacteriia 976|Bacteroidetes L TIGRFAM hydrolase, TatD family tatD - - ko:K03424 - - - - ko00000,ko01000 - - - TatD_DNase DYD3_k127_243097_3 1268240.ATFI01000018_gene60 5.287e-09 59.0 2A76E@1|root,30W2E@2|Bacteria,4P9FC@976|Bacteroidetes,2FZNB@200643|Bacteroidia,4AUSK@815|Bacteroidaceae 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2435551_1 1121931.AUHG01000010_gene312 1.651e-74 254.0 COG0457@1|root,COG0457@2|Bacteria,4NDX0@976|Bacteroidetes,1HYEF@117743|Flavobacteriia 976|Bacteroidetes S SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_2435551_2 555500.I215_10133 9.215e-45 165.0 COG0457@1|root,COG0457@2|Bacteria,4NDX0@976|Bacteroidetes,1HYEF@117743|Flavobacteriia 976|Bacteroidetes S SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_2435551_0 385682.AFSL01000055_gene398 4.922e-211 665.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,2FM2D@200643|Bacteroidia,3XKGS@558415|Marinilabiliaceae 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2449530_0 1296415.JACC01000029_gene2682 1.377e-55 198.0 COG0666@1|root,COG0666@2|Bacteria,4NTQ9@976|Bacteroidetes,1IKV1@117743|Flavobacteriia,2YJE6@290174|Aquimarina 976|Bacteroidetes S response to abiotic stimulus - - - - - - - - - - - - - DYD3_k127_2449530_1 485918.Cpin_4085 3.173e-40 162.0 COG2972@1|root,COG2972@2|Bacteria,4NIRC@976|Bacteroidetes,1J05H@117747|Sphingobacteriia 976|Bacteroidetes T Signal transduction histidine kinase, LytS - - - - - - - - - - - - HATPase_c_5,His_kinase DYD3_k127_2449530_2 1122931.AUAE01000028_gene160 1.096e-35 138.0 COG3279@1|root,COG3279@2|Bacteria,4NF8U@976|Bacteroidetes,2FMI5@200643|Bacteroidia,22ZCF@171551|Porphyromonadaceae 976|Bacteroidetes T LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_2482660_0 700598.Niako_2583 5.875e-206 647.0 COG0855@1|root,COG0855@2|Bacteria,4NE3P@976|Bacteroidetes,1IPGC@117747|Sphingobacteriia 976|Bacteroidetes P Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) ppk - 2.7.4.1 ko:K00937 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PP_kinase,PP_kinase_C,PP_kinase_N DYD3_k127_2482660_2 700598.Niako_2584 5.325e-143 458.0 COG0248@1|root,COG0248@2|Bacteria,4NEI0@976|Bacteroidetes,1IQKP@117747|Sphingobacteriia 976|Bacteroidetes FP PFAM Ppx GppA phosphatase ppx - 3.6.1.11,3.6.1.40 ko:K01524 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000 - - - Ppx-GppA DYD3_k127_2482660_1 700598.Niako_2585 6.725e-147 467.0 COG0413@1|root,COG0413@2|Bacteria,4NDX4@976|Bacteroidetes,1IRN1@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate panB - 2.1.2.11 ko:K00606 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R01226 RC00022,RC00200 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_transf DYD3_k127_2482660_3 700598.Niako_1516 1.404e-36 140.0 COG1012@1|root,COG1012@2|Bacteria,4NFPJ@976|Bacteroidetes,1INP0@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the aldehyde dehydrogenase family pcd - 1.2.1.3 ko:K00128 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD3_k127_2482853_4 1121904.ARBP01000003_gene6544 1.789e-07 52.0 COG3291@1|root,COG5184@1|root,COG3291@2|Bacteria,COG5184@2|Bacteria,4PPKF@976|Bacteroidetes,47VK5@768503|Cytophagia 976|Bacteroidetes DZ Pkd domain containing protein - - - - - - - - - - - - - DYD3_k127_2482853_1 700598.Niako_3925 5.303e-164 522.0 COG0226@1|root,COG0226@2|Bacteria,4PKPM@976|Bacteroidetes,1J0PW@117747|Sphingobacteriia 976|Bacteroidetes P Type IX secretion system membrane protein PorP/SprF - - - - - - - - - - - - PorP_SprF DYD3_k127_2482853_0 700598.Niako_1175 2.005e-184 595.0 COG4219@1|root,COG4219@2|Bacteria,4NKKC@976|Bacteroidetes,1IPFV@117747|Sphingobacteriia 976|Bacteroidetes KT BlaR1 peptidase M56 - - - - - - - - - - - - Peptidase_M56 DYD3_k127_2482853_3 700598.Niako_1176 2.056e-62 216.0 COG3682@1|root,COG3682@2|Bacteria,4NSQR@976|Bacteroidetes,1ISTV@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional repressor, CopY family - - - - - - - - - - - - Penicillinase_R DYD3_k127_2482853_2 700598.Niako_1178 1.766e-151 483.0 COG3000@1|root,COG3000@2|Bacteria,4NI60@976|Bacteroidetes,1IRF9@117747|Sphingobacteriia 976|Bacteroidetes I Fatty acid hydroxylase superfamily - - - - - - - - - - - - FA_hydroxylase DYD3_k127_2484468_1 700598.Niako_4411 7.792e-241 754.0 COG1629@1|root,COG4771@2|Bacteria,4PKB3@976|Bacteroidetes,1IPFQ@117747|Sphingobacteriia 976|Bacteroidetes P receptor - - - - - - - - - - - - TonB_dep_Rec DYD3_k127_2484468_0 700598.Niako_4412 0.0 1405.0 COG0457@1|root,COG1729@1|root,COG0457@2|Bacteria,COG1729@2|Bacteria,4NE4W@976|Bacteroidetes,1IPPH@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Tetratricopeptide - - - - - - - - - - - - TPR_16,TPR_2,TPR_21,TPR_6,TPR_8 DYD3_k127_2492559_1 700598.Niako_1223 2.094e-110 364.0 COG0860@1|root,COG0860@2|Bacteria 2|Bacteria M N-Acetylmuramoyl-L-alanine amidase amiA - 3.5.1.28 ko:K01448 ko01503,map01503 M00727 R04112 RC00064,RC00141 ko00000,ko00001,ko00002,ko01000,ko01011,ko03036 - - - Amidase_3 DYD3_k127_2492559_0 700598.Niako_1224 0.0 1196.0 COG1452@1|root,COG1452@2|Bacteria,4NFWD@976|Bacteroidetes,1IQE0@117747|Sphingobacteriia 976|Bacteroidetes M Organic solvent tolerance protein OstA - - - - - - - - - - - - - DYD3_k127_2492559_2 700598.Niako_1225 7.391e-110 359.0 COG0204@1|root,COG0204@2|Bacteria,4NG5R@976|Bacteroidetes,1IS1B@117747|Sphingobacteriia 976|Bacteroidetes I Acyltransferase plsC - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase DYD3_k127_2492559_3 700598.Niako_1226 1.541e-57 201.0 COG0692@1|root,COG0692@2|Bacteria,4NE2B@976|Bacteroidetes,1IQ5P@117747|Sphingobacteriia 976|Bacteroidetes L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine ung - 3.2.2.27 ko:K03648 ko03410,ko05340,map03410,map05340 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG DYD3_k127_2508002_0 1123057.P872_05260 2.883e-117 388.0 COG0469@1|root,COG0469@2|Bacteria,4NGQX@976|Bacteroidetes,47T9Y@768503|Cytophagia 976|Bacteroidetes G Pyruvate kinase, barrel domain - - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK DYD3_k127_2508002_2 1270193.JARP01000003_gene2038 7.084e-86 289.0 COG0640@1|root,COG0640@2|Bacteria,4NPW9@976|Bacteroidetes,1I25Q@117743|Flavobacteriia,2NTA9@237|Flavobacterium 976|Bacteroidetes K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20 DYD3_k127_2508002_1 991.IW20_04550 3.781e-88 303.0 COG2124@1|root,COG2124@2|Bacteria,4PDAQ@976|Bacteroidetes,1ICWM@117743|Flavobacteriia,2NVNB@237|Flavobacterium 976|Bacteroidetes Q Cytochrome P450 - - - - - - - - - - - - p450 DYD3_k127_2508002_3 700598.Niako_5264 2.319e-20 93.0 COG2885@1|root,COG2885@2|Bacteria,4NE8J@976|Bacteroidetes,1IPSE@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the ompA family - - - - - - - - - - - - OmpA,TSP_3 DYD3_k127_2526557_5 929713.NIASO_13285 1.187e-08 57.0 COG3525@1|root,COG3525@2|Bacteria,4NGV2@976|Bacteroidetes,1IRPA@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolase family 20, catalytic domain - - - - - - - - - - - - Glyco_hydro_20 DYD3_k127_2526557_2 700598.Niako_5726 3.013e-148 478.0 COG4299@1|root,COG4299@2|Bacteria,4NIQV@976|Bacteroidetes,1IR87@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF5009) - - - - - - - - - - - - DUF1624,DUF5009 DYD3_k127_2526557_3 279714.FuraDRAFT_1535 1.414e-47 178.0 COG2141@1|root,COG2141@2|Bacteria,1RGXC@1224|Proteobacteria,2VW8E@28216|Betaproteobacteria 28216|Betaproteobacteria C COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - - - - - - - - - - - DYD3_k127_2526557_0 700598.Niako_5725 4.036e-234 728.0 COG0001@1|root,COG0001@2|Bacteria,4NDXG@976|Bacteroidetes,1INWD@117747|Sphingobacteriia 976|Bacteroidetes H Glutamate-1-semialdehyde aminotransferase hemL - 5.4.3.8 ko:K01845 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02272 RC00677 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 DYD3_k127_2526557_1 700598.Niako_5724 2.992e-184 578.0 COG0113@1|root,COG0113@2|Bacteria,4NFW6@976|Bacteroidetes,1INPZ@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the ALAD family hemB - 4.2.1.24 ko:K01698 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00036 RC00918,RC01781 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ALAD DYD3_k127_2526557_4 1123248.KB893348_gene72 3.042e-44 162.0 COG4804@1|root,COG4804@2|Bacteria,4NGY8@976|Bacteroidetes,1IRN5@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1016) - - - - - - - - - - - - DUF1016 DYD3_k127_253009_1 700598.Niako_2577 8.067e-95 312.0 COG0621@1|root,COG0621@2|Bacteria,4NEJK@976|Bacteroidetes,1IP0Q@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,TRAM,UPF0004 DYD3_k127_253009_4 925409.KI911562_gene2497 1.412e-27 117.0 COG3637@1|root,COG3637@2|Bacteria,4NNFR@976|Bacteroidetes,1IU44@117747|Sphingobacteriia 976|Bacteroidetes M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - - DYD3_k127_253009_0 700598.Niako_2579 1.454e-172 544.0 COG0552@1|root,COG0552@2|Bacteria,4NE9Z@976|Bacteroidetes,1IPD8@117747|Sphingobacteriia 976|Bacteroidetes U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) ftsY - - ko:K03110 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2,3.A.5.7 - - SRP54,SRP54_N DYD3_k127_253009_5 1123248.KB893323_gene1572 5.079e-22 96.0 2ACFD@1|root,31210@2|Bacteria,4PGVP@976|Bacteroidetes,1IUGW@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4295) - - - - - - - - - - - - DUF4295 DYD3_k127_253009_3 925409.KI911562_gene2500 6.478e-28 113.0 COG0267@1|root,COG0267@2|Bacteria,4NURM@976|Bacteroidetes,1IU0P@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the bacterial ribosomal protein bL33 family rpmG - - ko:K02913 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L33 DYD3_k127_253009_2 700598.Niako_2582 1.318e-36 139.0 COG0227@1|root,COG0227@2|Bacteria,4NS7Q@976|Bacteroidetes,1IUBT@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the bacterial ribosomal protein bL28 family rpmB GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02902 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L28 DYD3_k127_2533684_2 485918.Cpin_6148 2.295e-23 109.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1IR9P@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2533684_1 694427.Palpr_2513 5.274e-44 177.0 COG0388@1|root,COG0388@2|Bacteria,4PKF8@976|Bacteroidetes,2FM77@200643|Bacteroidia,22YAR@171551|Porphyromonadaceae 976|Bacteroidetes S SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_2533684_0 1313421.JHBV01000029_gene1865 1.51e-51 196.0 COG4232@1|root,COG4232@2|Bacteria,4NIXX@976|Bacteroidetes,1ISA3@117747|Sphingobacteriia 976|Bacteroidetes CO Protein of unknown function, DUF255 - - - - - - - - - - - - Thioredox_DsbH,Thioredoxin,Thioredoxin_2,Thioredoxin_7 DYD3_k127_2533820_2 700598.Niako_6510 1.866e-17 82.0 COG3304@1|root,COG3304@2|Bacteria,4NQSS@976|Bacteroidetes,1IXGC@117747|Sphingobacteriia 976|Bacteroidetes S Inner membrane component domain - - - - - - - - - - - - YccF DYD3_k127_2533820_1 700598.Niako_6511 2.71e-170 545.0 COG0739@1|root,COG0739@2|Bacteria,4NECF@976|Bacteroidetes,1IRH5@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase family M23 - - - - - - - - - - - - Peptidase_M23 DYD3_k127_2533820_0 700598.Niako_6513 4.555e-302 934.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,4NHS5@976|Bacteroidetes,1INY1@117747|Sphingobacteriia 976|Bacteroidetes EU Prolyl oligopeptidase family - - - - - - - - - - - - PD40,Peptidase_S9 DYD3_k127_2534939_2 700598.Niako_5615 9.5e-89 295.0 COG2010@1|root,COG2010@2|Bacteria,4PM2M@976|Bacteroidetes,1J0TU@117747|Sphingobacteriia 976|Bacteroidetes C Cytochrome c - - - - - - - - - - - - - DYD3_k127_2534939_0 700598.Niako_5616 5.572e-253 796.0 COG3291@1|root,COG3291@2|Bacteria,4NJTH@976|Bacteroidetes,1IPZ0@117747|Sphingobacteriia 976|Bacteroidetes S PFAM PKD domain - - - - - - - - - - - - PKD DYD3_k127_2534939_1 700598.Niako_5617 1.107e-158 519.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,4NJY0@976|Bacteroidetes,1ISCB@117747|Sphingobacteriia 976|Bacteroidetes S Tetratricopeptide domain protein - - - - - - - - - - - - CHAT,TPR_10,TPR_12,TPR_8 DYD3_k127_2537110_2 700598.Niako_6877 5.661e-124 400.0 COG0491@1|root,COG0491@2|Bacteria,4NHW8@976|Bacteroidetes,1IQ1J@117747|Sphingobacteriia 976|Bacteroidetes S Metallo-beta-lactamase - - - - - - - - - - - - Lactamase_B DYD3_k127_2537110_1 700598.Niako_6876 1.683e-212 667.0 COG0772@1|root,COG0772@2|Bacteria,4NDZD@976|Bacteroidetes,1INPB@117747|Sphingobacteriia 976|Bacteroidetes D Belongs to the SEDS family rodA - - ko:K05837 - - - - ko00000,ko03036 - - - FTSW_RODA_SPOVE DYD3_k127_2537110_0 700598.Niako_6875 1.482e-298 929.0 COG0768@1|root,COG0768@2|Bacteria,4NE47@976|Bacteroidetes,1IQ2C@117747|Sphingobacteriia 976|Bacteroidetes M Penicillin-binding protein 2 mrdA - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase DYD3_k127_2537110_4 700598.Niako_6874 7.295e-85 283.0 2AFDM@1|root,315DF@2|Bacteria,4NQ5K@976|Bacteroidetes,1ISUS@117747|Sphingobacteriia 976|Bacteroidetes S rod shape-determining protein MreD mreD - - - - - - - - - - - - DYD3_k127_2537110_3 700598.Niako_6873 3.567e-106 351.0 COG1792@1|root,COG1792@2|Bacteria,4NF14@976|Bacteroidetes,1IPE1@117747|Sphingobacteriia 976|Bacteroidetes M shape-determining protein MreC mreC - - ko:K03570 - - - - ko00000,ko03036 9.B.157.1 - - MreC DYD3_k127_2537110_5 700598.Niako_6872 1.54e-57 200.0 COG1077@1|root,COG1077@2|Bacteria,4NETQ@976|Bacteroidetes,1IPMZ@117747|Sphingobacteriia 976|Bacteroidetes D Cell shape determining protein MreB Mrl mreB - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl DYD3_k127_2545945_0 700598.Niako_7075 4.7e-201 631.0 COG1007@1|root,COG1007@2|Bacteria,4NF94@976|Bacteroidetes,1IP5V@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoN - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M DYD3_k127_2545945_1 700598.Niako_7076 3.01e-68 236.0 COG0577@1|root,COG0577@2|Bacteria,4NEBD@976|Bacteroidetes,1IR3W@117747|Sphingobacteriia 976|Bacteroidetes V ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_2546466_1 700598.Niako_4459 9.904e-69 234.0 COG0099@1|root,COG0099@2|Bacteria,4NNGZ@976|Bacteroidetes,1ISH0@117747|Sphingobacteriia 976|Bacteroidetes J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits rpsM GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02952 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S13 DYD3_k127_2546466_6 216432.CA2559_05830 1.798e-15 76.0 COG0257@1|root,COG0257@2|Bacteria,4NXGE@976|Bacteroidetes,1I6A2@117743|Flavobacteriia 976|Bacteroidetes J Belongs to the bacterial ribosomal protein bL36 family rpmJ - - ko:K02919 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L36 DYD3_k127_2546466_4 700598.Niako_4461 2.161e-39 146.0 COG0361@1|root,COG0361@2|Bacteria,4NS6S@976|Bacteroidetes,1IT95@117747|Sphingobacteriia 976|Bacteroidetes J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex infA GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - ko:K02518 - - - - ko00000,ko03012 - - - eIF-1a DYD3_k127_2546466_8 700598.Niako_4464 1.839e-12 70.0 COG2608@1|root,COG2608@2|Bacteria 2|Bacteria P mercury ion transmembrane transporter activity - - - ko:K07213 ko04978,map04978 - - - ko00000,ko00001 - - - HMA DYD3_k127_2546466_2 700598.Niako_4465 1.422e-51 186.0 COG1309@1|root,COG1309@2|Bacteria,4NMW1@976|Bacteroidetes,1IS3Z@117747|Sphingobacteriia 976|Bacteroidetes K PFAM Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N DYD3_k127_2546466_7 700598.Niako_4465 1.539e-13 71.0 COG1309@1|root,COG1309@2|Bacteria,4NMW1@976|Bacteroidetes,1IS3Z@117747|Sphingobacteriia 976|Bacteroidetes K PFAM Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N DYD3_k127_2546466_0 1185876.BN8_04398 4.546e-138 446.0 COG0667@1|root,COG0667@2|Bacteria,4NF06@976|Bacteroidetes,47K7K@768503|Cytophagia 976|Bacteroidetes C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD3_k127_2546466_5 700598.Niako_4468 4.402e-29 116.0 COG0842@1|root,COG0842@2|Bacteria,4NFM0@976|Bacteroidetes 976|Bacteroidetes V ABC-2 type transporter - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_3 DYD3_k127_2550059_5 700598.Niako_5746 8.084e-46 177.0 COG5343@1|root,COG5343@2|Bacteria,4NI2H@976|Bacteroidetes,1IS07@117747|Sphingobacteriia 976|Bacteroidetes S Anti-sigma-K factor rskA - - - - - - - - - - - - RskA DYD3_k127_2550059_1 700598.Niako_5747 1.775e-79 270.0 COG1595@1|root,COG1595@2|Bacteria,4NMIY@976|Bacteroidetes,1IS9P@117747|Sphingobacteriia 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4,Sigma70_r4_2 DYD3_k127_2550059_2 700598.Niako_5748 2.226e-62 216.0 COG0509@1|root,COG0509@2|Bacteria,4NQ35@976|Bacteroidetes,1IXRK@117747|Sphingobacteriia 976|Bacteroidetes E Glycine cleavage H-protein gcvH - - ko:K02437 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221 RC00022,RC02834 ko00000,ko00001,ko00002 - - - GCV_H DYD3_k127_2550059_0 700598.Niako_5749 4.145e-81 276.0 COG0652@1|root,COG0652@2|Bacteria,4NGT6@976|Bacteroidetes,1IRYC@117747|Sphingobacteriia 976|Bacteroidetes M Peptidyl-prolyl cis-trans isomerase - - 5.2.1.8 ko:K03768 - - - - ko00000,ko01000,ko03110 - - - Pro_isomerase DYD3_k127_2550059_3 700598.Niako_5750 1.636e-59 208.0 29D8R@1|root,3006P@2|Bacteria,4NNGD@976|Bacteroidetes,1ISQF@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2550059_4 700598.Niako_5751 8.463e-59 208.0 COG0454@1|root,COG0454@2|Bacteria,4PKSA@976|Bacteroidetes,1IT4P@117747|Sphingobacteriia 976|Bacteroidetes K Gnat family - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_10,Acetyltransf_7 DYD3_k127_2550059_7 1353276.JADR01000003_gene2727 2.985e-11 66.0 COG0172@1|root,COG0172@2|Bacteria,4NED6@976|Bacteroidetes,1HY6A@117743|Flavobacteriia 976|Bacteroidetes J seryl-tRNA synthetase serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b DYD3_k127_2550849_3 545243.BAEV01000004_gene873 1.214e-18 89.0 COG3118@1|root,COG3118@2|Bacteria,1VA3Y@1239|Firmicutes,24MM5@186801|Clostridia,36KFX@31979|Clostridiaceae 186801|Clostridia O Belongs to the thioredoxin family trxA - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin DYD3_k127_2550849_2 929703.KE386491_gene2196 6.742e-48 179.0 COG0664@1|root,COG0664@2|Bacteria,4NKW5@976|Bacteroidetes,47N83@768503|Cytophagia 976|Bacteroidetes K Crp-like helix-turn-helix domain - - - ko:K10914 ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111 - - - ko00000,ko00001,ko03000 - - - HTH_Crp_2,cNMP_binding DYD3_k127_2550849_1 153721.MYP_329 3.613e-64 231.0 COG1449@1|root,COG1449@2|Bacteria,4NFXW@976|Bacteroidetes,47P2J@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 57 family amyA - 3.2.1.1 ko:K07405 ko00500,ko01100,map00500,map01100 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH57 - Glyco_hydro_57 DYD3_k127_2550849_0 1185876.BN8_03828 3.081e-114 374.0 COG1028@1|root,COG1028@2|Bacteria,4NH1Y@976|Bacteroidetes,47JW6@768503|Cytophagia 976|Bacteroidetes IQ Short-chain dehydrogenase reductase SDR gdh3 - 1.1.1.47 ko:K00034 ko00030,ko01120,ko01200,map00030,map01120,map01200 - R01520,R01521 RC00066 ko00000,ko00001,ko01000 - - - adh_short_C2 DYD3_k127_255374_4 745718.JADT01000001_gene1891 2.317e-12 80.0 COG5295@1|root,COG5295@2|Bacteria,4NE4G@976|Bacteroidetes,1HY8R@117743|Flavobacteriia 976|Bacteroidetes UW Hep Hag repeat protein - - - - - - - - - - - - - DYD3_k127_255374_1 1121957.ATVL01000008_gene4553 1.542e-61 233.0 COG5295@1|root,COG5295@2|Bacteria,4NKG1@976|Bacteroidetes,47NK6@768503|Cytophagia 976|Bacteroidetes MUW domain, Protein - - - - - - - - - - - - Peptidase_S74 DYD3_k127_255374_3 926562.Oweho_1818 1.329e-17 87.0 COG3279@1|root,COG3279@2|Bacteria,4NNHE@976|Bacteroidetes,1HZAH@117743|Flavobacteriia,2PATW@246874|Cryomorphaceae 976|Bacteroidetes K Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_255374_0 700598.Niako_5613 9.101e-65 229.0 COG4783@1|root,COG4783@2|Bacteria,4NM73@976|Bacteroidetes,1IU03@117747|Sphingobacteriia 976|Bacteroidetes S chaperone-mediated protein folding - - - - - - - - - - - - ANAPC3,TPR_16,TPR_19 DYD3_k127_255374_2 700598.Niako_5614 5.392e-53 188.0 COG1595@1|root,COG1595@2|Bacteria,4NIB5@976|Bacteroidetes,1IT9A@117747|Sphingobacteriia 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - - - - - - - - - - Sigma70_r2 DYD3_k127_2556801_2 926559.JoomaDRAFT_3932 1.242e-23 102.0 COG1396@1|root,COG1396@2|Bacteria,4NVWR@976|Bacteroidetes,1IK6W@117743|Flavobacteriia 976|Bacteroidetes K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_3 DYD3_k127_2556801_1 700598.Niako_4583 1.631e-111 369.0 COG1388@1|root,COG1388@2|Bacteria,4PFVG@976|Bacteroidetes,1ISAE@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Peptidoglycan-binding lysin domain - - - - - - - - - - - - LysM DYD3_k127_2556801_0 700598.Niako_4584 9.33e-200 631.0 COG0144@1|root,COG3270@1|root,COG0144@2|Bacteria,COG3270@2|Bacteria,4NEV7@976|Bacteroidetes,1IPRI@117747|Sphingobacteriia 976|Bacteroidetes J PFAM Bacterial Fmu (Sun) eukaryotic nucleolar NOL1 Nop2p rsmF - - - - - - - - - - - Methyltr_RsmB-F,Methyltr_RsmF_N,Methyltranf_PUA DYD3_k127_2562782_3 700598.Niako_5581 9.111e-14 71.0 COG0457@1|root,COG0642@1|root,COG0457@2|Bacteria,COG2205@2|Bacteria,4NQHU@976|Bacteroidetes 976|Bacteroidetes T Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,TPR_12,TPR_8 DYD3_k127_2562782_1 1267211.KI669560_gene870 3.542e-36 142.0 2CH3Z@1|root,32RP9@2|Bacteria,4NQUA@976|Bacteroidetes,1IYRN@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2721) - - - - - - - - - - - - DUF2721 DYD3_k127_2562782_0 1492737.FEM08_19750 5.748e-43 166.0 COG0500@1|root,COG0500@2|Bacteria,4NRXV@976|Bacteroidetes,1I9VG@117743|Flavobacteriia 976|Bacteroidetes Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_23 DYD3_k127_2562782_2 1526927.Plano_2261 1.047e-27 122.0 COG1215@1|root,COG1215@2|Bacteria,1UI1V@1239|Firmicutes,4ISB6@91061|Bacilli,26G60@186818|Planococcaceae 91061|Bacilli M Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD3_k127_2568183_1 700598.Niako_1153 1.059e-138 446.0 COG2008@1|root,COG2008@2|Bacteria,4NEIH@976|Bacteroidetes,1IQZT@117747|Sphingobacteriia 976|Bacteroidetes E Threonine aldolase ltaA - 4.1.2.48 ko:K01620 ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230 - R00751,R06171 RC00312,RC00372 ko00000,ko00001,ko01000 - - - Beta_elim_lyase DYD3_k127_2568183_0 700598.Niako_1152 1.918e-296 915.0 COG0166@1|root,COG0166@2|Bacteria,4NDV0@976|Bacteroidetes,1IPXI@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the GPI family pgi - 5.3.1.9 ko:K01810 ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200 M00001,M00004,M00114 R02739,R02740,R03321 RC00376,RC00563 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGI DYD3_k127_2569425_0 1123277.KB893178_gene2670 5.94e-225 714.0 COG4585@1|root,COG4585@2|Bacteria,4NI65@976|Bacteroidetes,47P48@768503|Cytophagia 976|Bacteroidetes T histidine kinase dimerisation and phosphoacceptor region - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_12 DYD3_k127_2569425_1 1166018.FAES_0009 5.141e-70 239.0 COG0388@1|root,COG0388@2|Bacteria,4NGWX@976|Bacteroidetes,47JH4@768503|Cytophagia 976|Bacteroidetes S PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - - - - - - - - - - CN_hydrolase DYD3_k127_2576175_0 485918.Cpin_5378 9.948e-54 190.0 COG0376@1|root,COG0376@2|Bacteria,4NG30@976|Bacteroidetes,1IQZ2@117747|Sphingobacteriia 976|Bacteroidetes P Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity katG - 1.11.1.21 ko:K03782 ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110 - R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906 RC00034,RC00213,RC00767,RC02141 ko00000,ko00001,ko01000 - - - peroxidase DYD3_k127_2576175_5 1346330.M472_00125 5.125e-23 102.0 COG1724@1|root,COG1724@2|Bacteria,4NWJM@976|Bacteroidetes,1J02P@117747|Sphingobacteriia 976|Bacteroidetes N HicA toxin of bacterial toxin-antitoxin, - - - - - - - - - - - - HicA_toxin DYD3_k127_2576175_1 1346330.M472_00115 1.598e-45 168.0 COG1598@1|root,COG1598@2|Bacteria,4NTHM@976|Bacteroidetes,1IUFF@117747|Sphingobacteriia 976|Bacteroidetes S Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - HTH_3 DYD3_k127_2576175_4 1453498.LG45_02785 4.987e-28 117.0 COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1HWYS@117743|Flavobacteriia,2NVMV@237|Flavobacterium 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HATPase_c_2,HisKA_2,TPR_12,TPR_8 DYD3_k127_2576175_8 1166018.FAES_3715 0.0002817 44.0 COG3781@1|root,COG3781@2|Bacteria,4NGJ0@976|Bacteroidetes,47M3V@768503|Cytophagia 976|Bacteroidetes S Bestrophin, RFP-TM, chloride channel - - - ko:K08994 - - - - ko00000,ko02000 1.A.46.2 - - Bestrophin DYD3_k127_2576175_3 639030.JHVA01000001_gene2913 6.207e-37 151.0 COG4270@1|root,COG4270@2|Bacteria,3Y5DS@57723|Acidobacteria,2JN6B@204432|Acidobacteriia 204432|Acidobacteriia S Membrane - - - - - - - - - - - - - DYD3_k127_2576175_7 1123277.KB893180_gene2340 5.779e-07 57.0 2EB61@1|root,3356S@2|Bacteria,4NUNR@976|Bacteroidetes,47SGC@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - Lipocalin_4 DYD3_k127_2576175_6 504472.Slin_3197 1.565e-13 72.0 COG0662@1|root,COG0662@2|Bacteria,4NT7A@976|Bacteroidetes,47RUT@768503|Cytophagia 976|Bacteroidetes G Cupin domain - - - - - - - - - - - - Cupin_2 DYD3_k127_2576175_2 497965.Cyan7822_5116 1.15e-38 168.0 COG2931@1|root,COG3210@1|root,COG2931@2|Bacteria,COG3210@2|Bacteria,1GC1J@1117|Cyanobacteria,3KJVM@43988|Cyanothece 1117|Cyanobacteria QU Polymorphic membrane protein Chlamydia - - - - - - - - - - - - Cadherin DYD3_k127_2577041_3 1434325.AZQN01000003_gene2041 4.241e-27 116.0 COG3238@1|root,COG3238@2|Bacteria,4NQQ3@976|Bacteroidetes,47QPV@768503|Cytophagia 976|Bacteroidetes S Putative inner membrane exporter, YdcZ - - - ko:K09936 ko02024,map02024 - - - ko00000,ko00001,ko02000 2.A.7.21 - - DMT_YdcZ DYD3_k127_2577041_0 700598.Niako_6665 1.5e-109 360.0 28NPZ@1|root,2ZBPQ@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - OMP_b-brl_2 DYD3_k127_2577041_1 700598.Niako_6667 1.1e-89 297.0 COG1595@1|root,COG1595@2|Bacteria,4NQ7S@976|Bacteroidetes 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_2584075_4 929713.NIASO_18180 1.179e-49 181.0 COG0795@1|root,COG0795@2|Bacteria,4NE8B@976|Bacteroidetes,1INY8@117747|Sphingobacteriia 976|Bacteroidetes S Permease, YjgP YjgQ family - - - ko:K07091 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ DYD3_k127_2584075_3 700598.Niako_7031 2.928e-70 244.0 2E469@1|root,32Z27@2|Bacteria,4P4UV@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2584075_2 700598.Niako_7032 1.481e-70 239.0 COG3832@1|root,COG3832@2|Bacteria,4NNY1@976|Bacteroidetes,1ISF1@117747|Sphingobacteriia 976|Bacteroidetes S Pfam Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_2584075_1 700598.Niako_7033 3.641e-166 524.0 COG0568@1|root,COG0568@2|Bacteria,4NEBF@976|Bacteroidetes,1INNM@117747|Sphingobacteriia 976|Bacteroidetes K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released rpoD - - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 DYD3_k127_2584075_0 700598.Niako_7034 8.945e-237 737.0 COG0541@1|root,COG0541@2|Bacteria,4NDZ2@976|Bacteroidetes,1INMC@117747|Sphingobacteriia 976|Bacteroidetes U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY ffh - 3.6.5.4 ko:K03106 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko01000,ko02044 3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9 - - SRP54,SRP54_N,SRP_SPB DYD3_k127_2584075_5 700598.Niako_7035 1.149e-48 175.0 COG0228@1|root,COG0228@2|Bacteria,4NNY8@976|Bacteroidetes,1IRXR@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the bacterial ribosomal protein bS16 family rpsP GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02959 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S16 DYD3_k127_2586035_2 700598.Niako_0539 3.395e-43 160.0 COG0521@1|root,COG0521@2|Bacteria,4NEQZ@976|Bacteroidetes,1IR62@117747|Sphingobacteriia 976|Bacteroidetes H Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like,SusD-like_2 DYD3_k127_2586035_0 700598.Niako_0540 0.0 1658.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,4NDU8@976|Bacteroidetes,1IPD4@117747|Sphingobacteriia 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2586035_1 700598.Niako_4625 1.805e-127 417.0 COG2114@1|root,COG2207@1|root,COG2114@2|Bacteria,COG2207@2|Bacteria,4NFVC@976|Bacteroidetes,1IXZX@117747|Sphingobacteriia 976|Bacteroidetes K Protein of unknown function (DUF4242) - - - - - - - - - - - - DUF4242,HTH_18 DYD3_k127_2586035_5 224911.27349170 0.0006089 44.0 COG1765@1|root,COG1765@2|Bacteria,1R9XU@1224|Proteobacteria,2U6E4@28211|Alphaproteobacteria,3JSDI@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria O OsmC-like protein MA20_23315 - - - - - - - - - - - OsmC DYD3_k127_2611207_3 485917.Phep_2715 9.019e-29 117.0 COG2010@1|root,COG2010@2|Bacteria,4NFP6@976|Bacteroidetes,1IQMT@117747|Sphingobacteriia 976|Bacteroidetes C Protein of unknown function (DUF1553) - - - - - - - - - - - - CBM_6,PSCyt1,PSCyt2,PSD1 DYD3_k127_2611207_0 661478.OP10G_2391 3.491e-197 634.0 COG1409@1|root,COG3669@1|root,COG1409@2|Bacteria,COG3669@2|Bacteria 2|Bacteria G Alpha-L-fucosidase - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,Fucosidase_C,PA14 DYD3_k127_2611207_1 700598.Niako_5628 4.096e-166 529.0 COG1609@1|root,COG1609@2|Bacteria,4NIJP@976|Bacteroidetes,1INQR@117747|Sphingobacteriia 976|Bacteroidetes K lacI family - - - - - - - - - - - - LacI,Peripla_BP_1,Peripla_BP_3,Peripla_BP_4 DYD3_k127_2611207_2 1122605.KB893646_gene102 4.298e-78 263.0 COG0114@1|root,COG0114@2|Bacteria,4NEQP@976|Bacteroidetes,1IPCY@117747|Sphingobacteriia 976|Bacteroidetes C Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate fumC - 4.2.1.2 ko:K01679 ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211 M00009,M00011,M00173,M00376 R01082 RC00443 ko00000,ko00001,ko00002,ko01000 - - - FumaraseC_C,Lyase_1 DYD3_k127_2616269_1 700598.Niako_6489 6.254e-88 291.0 COG1522@1|root,COG1522@2|Bacteria,4NMEN@976|Bacteroidetes,1IRYP@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator, asnc family asnC - - ko:K03718 - - - - ko00000,ko03000 - - - AsnC_trans_reg,HTH_24,HTH_AsnC-type DYD3_k127_2616269_3 485918.Cpin_4427 1.978e-11 74.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis - - - - - - - - - - - - Big_5,CBM_3,PKD DYD3_k127_2616269_0 700598.Niako_6486 5.436e-122 393.0 COG0220@1|root,COG0220@2|Bacteria,4NG4V@976|Bacteroidetes,1ISBF@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA trmB GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 ko:K03439 - - - - ko00000,ko01000,ko03016 - - - Methyltransf_4 DYD3_k127_2620805_1 700598.Niako_1661 5.395e-45 167.0 COG2259@1|root,33816@2|Bacteria,4NUVH@976|Bacteroidetes 976|Bacteroidetes S DoxX-like family - - - - - - - - - - - - DoxX_2 DYD3_k127_2620805_0 929556.Solca_2140 2.291e-206 647.0 COG0464@1|root,COG0464@2|Bacteria,4NFWG@976|Bacteroidetes,1IR7U@117747|Sphingobacteriia 976|Bacteroidetes O AAA ATPase central domain protein - - - - - - - - - - - - AAA DYD3_k127_2622713_1 1358423.N180_08095 7.91e-94 319.0 COG1680@1|root,COG1680@2|Bacteria,4NG6Z@976|Bacteroidetes,1IUBB@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase,CBM9_1 DYD3_k127_2622713_2 1233950.IW22_22390 5.932e-82 280.0 COG2513@1|root,COG2513@2|Bacteria,4NMEH@976|Bacteroidetes,1I2BJ@117743|Flavobacteriia,3ZPSK@59732|Chryseobacterium 976|Bacteroidetes G Carboxyvinyl-carboxyphosphonate phosphorylmutase - - - - - - - - - - - - PEP_mutase DYD3_k127_2622713_5 509635.N824_01645 8.577e-38 149.0 COG3554@1|root,COG3554@2|Bacteria,4NTFB@976|Bacteroidetes,1IZ90@117747|Sphingobacteriia 976|Bacteroidetes S Putative glycolipid-binding - - - ko:K09957 - - - - ko00000 - - - Glycolipid_bind DYD3_k127_2622713_4 1123277.KB893243_gene135 2.563e-50 187.0 2EDR9@1|root,33BZ6@2|Bacteria,4NYGY@976|Bacteroidetes,47VFV@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2622713_3 1089547.KB913013_gene3595 1.512e-61 229.0 COG3203@1|root,COG3203@2|Bacteria,4PM6S@976|Bacteroidetes,47Y33@768503|Cytophagia 976|Bacteroidetes M FG-GAP repeat - - - - - - - - - - - - FG-GAP_2 DYD3_k127_2622713_0 700598.Niako_1951 3.877e-130 424.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INSB@117747|Sphingobacteriia 976|Bacteroidetes V TIGRFAM Acidobacterial duplicated orphan permease - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_2632974_1 700598.Niako_6697 1.613e-177 561.0 COG0671@1|root,COG0671@2|Bacteria,4NF9W@976|Bacteroidetes,1IRBB@117747|Sphingobacteriia 976|Bacteroidetes I SPTR Phosphoesterase, PA-phosphatase related - - - - - - - - - - - - PAP2 DYD3_k127_2632974_3 700598.Niako_6698 3.663e-72 248.0 2EHHG@1|root,33B9E@2|Bacteria,4NXY9@976|Bacteroidetes,1IUFY@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2632974_0 468059.AUHA01000004_gene2220 0.0 1135.0 COG1554@1|root,COG1554@2|Bacteria,4NFG1@976|Bacteroidetes,1IPYF@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolase family 65 central catalytic domain kojP - - - - - - - - - - - Glyco_hydro_65N,Glyco_hydro_65m DYD3_k127_2632974_2 700598.Niako_6699 5.432e-119 385.0 COG1028@1|root,COG1028@2|Bacteria,4NH6Y@976|Bacteroidetes,1IQBS@117747|Sphingobacteriia 976|Bacteroidetes IQ short-chain dehydrogenase - - - - - - - - - - - - adh_short_C2 DYD3_k127_2635792_2 1267211.KI669560_gene348 5.187e-99 326.0 COG4447@1|root,COG4447@2|Bacteria,4NESU@976|Bacteroidetes,1IVNR@117747|Sphingobacteriia 976|Bacteroidetes S Sortilin, neurotensin receptor 3, - - - - - - - - - - - - Sortilin-Vps10 DYD3_k127_2635792_4 983544.Lacal_2232 4.918e-75 259.0 COG2227@1|root,COG2227@2|Bacteria,4NJXV@976|Bacteroidetes,1HYP0@117743|Flavobacteriia 976|Bacteroidetes H AdoMet dependent proline di-methyltransferase - - - - - - - - - - - - Methyltransf_12,Methyltransf_23 DYD3_k127_2635792_1 1121889.AUDM01000003_gene2387 1.648e-120 392.0 COG1215@1|root,COG1215@2|Bacteria,4NF0S@976|Bacteroidetes,1HYRX@117743|Flavobacteriia,2NST0@237|Flavobacterium 976|Bacteroidetes M glycosyl transferase - - - - - - - - - - - - Glycos_transf_2 DYD3_k127_2635792_3 1123248.KB893338_gene2301 1.096e-76 262.0 COG2353@1|root,COG2353@2|Bacteria,4NPGK@976|Bacteroidetes,1IY81@117747|Sphingobacteriia 976|Bacteroidetes S YceI-like domain - - - - - - - - - - - - YceI DYD3_k127_2635792_0 700598.Niako_6087 4.81e-224 702.0 COG0526@1|root,COG0526@2|Bacteria,4NHEC@976|Bacteroidetes,1IXCQ@117747|Sphingobacteriia 976|Bacteroidetes CO PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - AhpC-TSA,DUF4369,DUF5106,Thioredoxin_8 DYD3_k127_2635792_5 700598.Niako_6086 7.366e-64 224.0 COG0760@1|root,COG0760@2|Bacteria,4NGIR@976|Bacteroidetes,1IPZ1@117747|Sphingobacteriia 976|Bacteroidetes O PPIC-type PPIASE domain - - 5.2.1.8 ko:K03771 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_2,Rotamase_3 DYD3_k127_2637174_1 700598.Niako_4999 0.0 1018.0 COG3292@1|root,COG5002@1|root,COG3292@2|Bacteria,COG5002@2|Bacteria,4NK8Q@976|Bacteroidetes 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HATPase_c,HisKA,Reg_prop,Y_Y_Y DYD3_k127_2637174_3 700598.Niako_5000 3.564e-109 358.0 COG0745@1|root,COG0745@2|Bacteria,4NJWQ@976|Bacteroidetes,1IQH8@117747|Sphingobacteriia 976|Bacteroidetes T COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - HTH_18,Response_reg DYD3_k127_2637174_0 1123277.KB893174_gene5924 0.0 1037.0 COG3533@1|root,COG3533@2|Bacteria,4NG7T@976|Bacteroidetes,47NSK@768503|Cytophagia 976|Bacteroidetes S Beta-L-arabinofuranosidase, GH127 - - - - - - - - - - - - Glyco_hydro_127 DYD3_k127_2637174_2 1123248.KB893318_gene4093 7.428e-179 571.0 COG0671@1|root,COG0671@2|Bacteria,4NF9W@976|Bacteroidetes,1IRBB@117747|Sphingobacteriia 976|Bacteroidetes I SPTR Phosphoesterase, PA-phosphatase related - - - - - - - - - - - - PAP2 DYD3_k127_2637174_5 1123248.KB893337_gene2321 5.569e-32 128.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IP40@117747|Sphingobacteriia 976|Bacteroidetes S SPTR ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_2637174_4 1123248.KB893337_gene2321 3.468e-38 145.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IP40@117747|Sphingobacteriia 976|Bacteroidetes S SPTR ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_2650342_0 861299.J421_0563 0.0 1034.0 COG1472@1|root,COG1472@2|Bacteria 2|Bacteria G Belongs to the glycosyl hydrolase 3 family - - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C,PA14 DYD3_k127_2650342_6 700598.Niako_1567 1.047e-28 117.0 COG2329@1|root,COG2329@2|Bacteria 2|Bacteria S heme oxygenase (decyclizing) activity - - 1.14.99.48 ko:K07145 ko00860,ko01110,map00860,map01110 - R10468,R10510 RC03185 ko00000,ko00001,ko01000 - - - ABM DYD3_k127_2650342_2 929556.Solca_1220 3.23e-99 331.0 COG0350@1|root,COG2207@1|root,COG0350@2|Bacteria,COG2207@2|Bacteria,4NFYC@976|Bacteroidetes,1IP7V@117747|Sphingobacteriia 976|Bacteroidetes K 6-O-methylguanine DNA methyltransferase, DNA binding domain ada - 2.1.1.63 ko:K10778 - - - - ko00000,ko01000,ko03000,ko03400 - - - DNA_binding_1,HTH_18,Methyltransf_1N DYD3_k127_2650342_1 700598.Niako_1565 7.247e-128 411.0 COG0176@1|root,COG0176@2|Bacteria,4NFVZ@976|Bacteroidetes,1IP8P@117747|Sphingobacteriia 976|Bacteroidetes G Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway tal - 2.2.1.2 ko:K00616,ko:K08314 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01827 RC00439,RC00604 ko00000,ko00001,ko00002,ko01000 - - - TAL_FSA DYD3_k127_2650342_3 700598.Niako_5437 6.981e-77 265.0 COG1794@1|root,COG1794@2|Bacteria,4NM9B@976|Bacteroidetes,1J15Z@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Asp Glu hydantoin racemase - - 5.1.1.13 ko:K01779 ko00250,ko01054,map00250,map01054 - R00491 RC00302 ko00000,ko00001,ko01000 - - - Asp_Glu_race DYD3_k127_2650342_4 929556.Solca_2680 7.515e-72 247.0 COG2885@1|root,COG2885@2|Bacteria,4NI3U@976|Bacteroidetes,1IQ3S@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the ompA family - - - ko:K03286 - - - - ko00000,ko02000 1.B.6 - - OMP_b-brl_2,OmpA DYD3_k127_2660324_0 485918.Cpin_0692 7.528e-168 532.0 COG0016@1|root,COG0016@2|Bacteria,4NF8I@976|Bacteroidetes,1IPG1@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily pheS GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 ko:K01889 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Phe_tRNA-synt_N,tRNA-synt_2d DYD3_k127_2660324_1 700598.Niako_6635 4.923e-122 396.0 COG1250@1|root,COG1250@2|Bacteria,4NF2W@976|Bacteroidetes 976|Bacteroidetes I Dehydrogenase paaH - 1.1.1.157 ko:K00074 ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120 - R01976,R05576,R06941 RC00029,RC00117 ko00000,ko00001,ko01000 - - - 3HCDH,3HCDH_N DYD3_k127_2675726_0 700598.Niako_0937 0.0 1665.0 COG0403@1|root,COG1003@1|root,COG0403@2|Bacteria,COG1003@2|Bacteria,4NEDE@976|Bacteroidetes,1INQX@117747|Sphingobacteriia 976|Bacteroidetes E The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor gcvP - 1.4.4.2 ko:K00281,ko:K00283 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko00002,ko01000 - - - GDC-P DYD3_k127_2675726_2 991.IW20_14400 6.372e-52 195.0 298D5@1|root,332DE@2|Bacteria,4NV39@976|Bacteroidetes,1I5NP@117743|Flavobacteriia 976|Bacteroidetes S Protein of unknown function (DUF3667) - - - - - - - - - - - - DUF3667 DYD3_k127_2675726_1 700598.Niako_0938 1.007e-159 508.0 COG3000@1|root,COG3000@2|Bacteria,4NI60@976|Bacteroidetes,1IQSK@117747|Sphingobacteriia 976|Bacteroidetes I PFAM Fatty acid hydroxylase superfamily - - - - - - - - - - - - FA_hydroxylase DYD3_k127_2675726_3 700598.Niako_0939 1.013e-31 125.0 COG3000@1|root,COG3000@2|Bacteria,4NI60@976|Bacteroidetes,1IQSK@117747|Sphingobacteriia 976|Bacteroidetes I PFAM Fatty acid hydroxylase superfamily - - - - - - - - - - - - FA_hydroxylase DYD3_k127_2688835_2 926569.ANT_14080 3.431e-07 52.0 COG0542@1|root,COG0542@2|Bacteria,2G5QU@200795|Chloroflexi 200795|Chloroflexi O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpB - - ko:K03695 ko04213,map04213 - - - ko00000,ko00001,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N DYD3_k127_2688835_1 700598.Niako_5707 2.94e-96 317.0 COG0472@1|root,COG0472@2|Bacteria,4NGKM@976|Bacteroidetes,1INPS@117747|Sphingobacteriia 976|Bacteroidetes M Glycosyl transferase, family 4 mraY2 - - - - - - - - - - - Glycos_transf_4 DYD3_k127_2688835_0 700598.Niako_5708 3.088e-120 390.0 COG3959@1|root,COG3959@2|Bacteria,4NDWK@976|Bacteroidetes,1IPAD@117747|Sphingobacteriia 976|Bacteroidetes G Transketolase - - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transketolase_N DYD3_k127_2692472_2 1150626.PHAMO_580013 0.0001561 44.0 COG1360@1|root,COG1360@2|Bacteria,1MW1Y@1224|Proteobacteria,2TTW2@28211|Alphaproteobacteria,2JPI3@204441|Rhodospirillales 204441|Rhodospirillales N Membrane MotB of proton-channel complex MotA/MotB motB - - ko:K02557 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - MotB_plug,OmpA DYD3_k127_2692472_0 504472.Slin_0929 0.0 1011.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2692472_1 929556.Solca_0257 1.47e-48 179.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ8S@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2697090_0 1185876.BN8_01421 1.668e-154 501.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NE2@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2697090_1 929703.KE386491_gene1729 3.978e-113 371.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2700032_2 1089547.KB913013_gene2703 1.849e-30 133.0 2EERZ@1|root,338JN@2|Bacteria,4NTN7@976|Bacteroidetes,47RB9@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF4361) - - - - - - - - - - - - DUF1735,DUF4361 DYD3_k127_2700032_0 1123037.AUDE01000012_gene171 1.565e-68 255.0 COG4676@1|root,COG4676@2|Bacteria,4NISW@976|Bacteroidetes,1I0BF@117743|Flavobacteriia 976|Bacteroidetes O Peptidyl-prolyl cis-trans isomerase - - - - - - - - - - - - UPF0560 DYD3_k127_2700032_3 700598.Niako_2401 2.018e-30 127.0 COG1595@1|root,COG1595@2|Bacteria,4NS3N@976|Bacteroidetes,1IYW6@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_2700032_1 376686.Fjoh_3803 1.543e-60 225.0 COG3712@1|root,COG3712@2|Bacteria,4NE6N@976|Bacteroidetes,1HWRF@117743|Flavobacteriia,2NTZD@237|Flavobacterium 976|Bacteroidetes PT FecR protein - - - - - - - - - - - - DUF4974,FecR DYD3_k127_2700032_4 700598.Niako_3499 9.368e-17 86.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IX7Z@117747|Sphingobacteriia 976|Bacteroidetes P CarboxypepD_reg-like domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN DYD3_k127_2705002_2 1185876.BN8_05813 1.671e-54 196.0 COG1696@1|root,COG1696@2|Bacteria,4NFK5@976|Bacteroidetes,47ME9@768503|Cytophagia 976|Bacteroidetes M membrane protein involved in D-alanine export - - - - - - - - - - - - MBOAT DYD3_k127_2705002_0 616991.JPOO01000003_gene662 1.453e-103 341.0 2DB9P@1|root,2Z7Y1@2|Bacteria,4NHQN@976|Bacteroidetes,1HZIH@117743|Flavobacteriia,23FSW@178469|Arenibacter 976|Bacteroidetes G Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_2705002_1 700598.Niako_0134 5.203e-86 289.0 COG0665@1|root,COG0665@2|Bacteria,4NFCD@976|Bacteroidetes,1IXHP@117747|Sphingobacteriia 976|Bacteroidetes E FAD dependent oxidoreductase thiO - - - - - - - - - - - DAO DYD3_k127_2708990_2 1150600.ADIARSV_2511 6.001e-102 338.0 COG0674@1|root,COG1013@1|root,COG1014@1|root,COG0674@2|Bacteria,COG1013@2|Bacteria,COG1014@2|Bacteria,4NF4F@976|Bacteroidetes,1IPIS@117747|Sphingobacteriia 976|Bacteroidetes C Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin nifJ - 1.2.7.1 ko:K03737 ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200 M00173,M00307 R01196,R10866 RC00004,RC02742 br01601,ko00000,ko00001,ko00002,ko01000 - - - EKR,Fer4_16,Fer4_7,PFOR_II,POR,POR_N,TPP_enzyme_C DYD3_k127_2708990_3 1123037.AUDE01000018_gene2866 1.221e-99 331.0 COG1814@1|root,COG1814@2|Bacteria,4NE6W@976|Bacteroidetes,1HZ1U@117743|Flavobacteriia 976|Bacteroidetes S membrane - - - - - - - - - - - - VIT1 DYD3_k127_2708990_6 1278073.MYSTI_02755 5.005e-13 71.0 28JJE@1|root,2Z9CH@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_2708990_7 1278073.MYSTI_02755 3.559e-10 61.0 28JJE@1|root,2Z9CH@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_2708990_4 700598.Niako_7222 6.782e-50 180.0 2CWXQ@1|root,32T0K@2|Bacteria,4NTPX@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2708990_1 700598.Niako_7221 9.154e-212 666.0 COG1007@1|root,COG1007@2|Bacteria,4NF94@976|Bacteroidetes,1IP5V@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoN - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M DYD3_k127_2708990_0 700598.Niako_7220 3.685e-230 721.0 COG1008@1|root,COG1008@2|Bacteria,4NEJ1@976|Bacteroidetes,1IR24@117747|Sphingobacteriia 976|Bacteroidetes C NADH-quinone oxidoreductase, chain M nuoM - 1.6.5.3 ko:K00342 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q5_N,Proton_antipo_M DYD3_k127_2708990_5 700598.Niako_7219 4.305e-25 106.0 COG1009@1|root,COG1009@2|Bacteria,4NEBM@976|Bacteroidetes,1IQWT@117747|Sphingobacteriia 976|Bacteroidetes CP Proton-translocating NADH-quinone oxidoreductase, chain L nuoL - 1.6.5.3 ko:K00341 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M,Proton_antipo_N DYD3_k127_2711657_3 1122605.KB893632_gene4389 1.099e-52 187.0 COG0331@1|root,COG0331@2|Bacteria,4NE1D@976|Bacteroidetes,1IQ02@117747|Sphingobacteriia 976|Bacteroidetes I malonyl CoA-acyl carrier protein transacylase fabD - 2.3.1.39 ko:K00645 ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212 M00082 R01626,R11671 RC00004,RC00039,RC02727 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyl_transf_1 DYD3_k127_2711657_2 1237149.C900_03897 4.219e-70 239.0 COG2764@1|root,COG2764@2|Bacteria,4NQD7@976|Bacteroidetes,47XP2@768503|Cytophagia 976|Bacteroidetes S 3-demethylubiquinone-9 3-methyltransferase - - - ko:K04750 - - - - ko00000 - - - 3-dmu-9_3-mt DYD3_k127_2711657_0 700598.Niako_5083 2.173e-168 540.0 COG0793@1|root,COG0793@2|Bacteria,4NFKJ@976|Bacteroidetes,1IS75@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase family S41 - - - - - - - - - - - - PDZ_2,Peptidase_S41 DYD3_k127_2711657_1 700598.Niako_5084 3.412e-73 248.0 COG1247@1|root,COG1247@2|Bacteria,4PM4N@976|Bacteroidetes,1ISGA@117747|Sphingobacteriia 976|Bacteroidetes M Gnat family - - - - - - - - - - - - Acetyltransf_1 DYD3_k127_2727543_1 700598.Niako_5842 7.562e-196 622.0 COG2911@1|root,COG2911@2|Bacteria,4NF7F@976|Bacteroidetes,1IPA0@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Family of - - - - - - - - - - - - TamB DYD3_k127_2727543_0 700598.Niako_5841 3.95e-307 960.0 COG4775@1|root,COG4775@2|Bacteria,4NE80@976|Bacteroidetes,1IPP9@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein protective antigen OMA87 - - - - - - - - - - - - Bac_surface_Ag DYD3_k127_2727604_1 700598.Niako_5481 1.121e-92 309.0 COG0497@1|root,COG0497@2|Bacteria,4NE3I@976|Bacteroidetes,1IQ2B@117747|Sphingobacteriia 976|Bacteroidetes L May be involved in recombinational repair of damaged DNA recN - - ko:K03631 - - - - ko00000,ko03400 - - - SMC_N DYD3_k127_2727604_0 700598.Niako_5482 4.874e-132 426.0 COG0457@1|root,COG0457@2|Bacteria,4NG8A@976|Bacteroidetes,1IP1E@117747|Sphingobacteriia 976|Bacteroidetes S TPR repeat-containing protein - - - - - - - - - - - - TPR_12,TPR_7,TPR_8 DYD3_k127_2735121_0 1122605.KB893631_gene3965 3.136e-62 216.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,1ITQW@117747|Sphingobacteriia 976|Bacteroidetes T COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_273619_3 700598.Niako_3666 3.749e-29 121.0 COG1595@1|root,COG1595@2|Bacteria,4NV4N@976|Bacteroidetes,1IYRF@117747|Sphingobacteriia 976|Bacteroidetes K COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_273619_4 1123248.KB893337_gene2617 4.975e-14 76.0 COG1396@1|root,COG1396@2|Bacteria,4NV20@976|Bacteroidetes,1IUI0@117747|Sphingobacteriia 976|Bacteroidetes K SMART Helix-turn-helix type 3 - - - - - - - - - - - - HTH_19,HTH_3 DYD3_k127_273619_1 700598.Niako_1575 4.6e-109 359.0 COG1273@1|root,COG1273@2|Bacteria,4NHHQ@976|Bacteroidetes,1IR53@117747|Sphingobacteriia 976|Bacteroidetes L With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD ku - - ko:K10979 ko03450,map03450 - - - ko00000,ko00001,ko03400 - - - Ku DYD3_k127_273619_0 700598.Niako_1577 1.524e-196 625.0 COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,4NESR@976|Bacteroidetes,1IQI9@117747|Sphingobacteriia 976|Bacteroidetes L DNA ligase - - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,LigD_N DYD3_k127_2753260_5 700598.Niako_2549 5.958e-26 108.0 COG1208@1|root,COG1208@2|Bacteria,4NFDB@976|Bacteroidetes,1IPMP@117747|Sphingobacteriia 976|Bacteroidetes JM Nucleotidyl transferase gmhB - 2.7.7.71 ko:K15669 ko00540,map00540 - R09772 RC00002 ko00000,ko00001,ko01000 - - - CBS,NTP_transferase DYD3_k127_2753260_3 700598.Niako_2550 6.957e-73 249.0 COG0241@1|root,COG0241@2|Bacteria,4NR54@976|Bacteroidetes,1IU3D@117747|Sphingobacteriia 976|Bacteroidetes E D,D-heptose 1,7-bisphosphate phosphatase - - 3.1.3.82,3.1.3.83 ko:K03273 ko00540,ko01100,map00540,map01100 M00064 R05647,R09771 RC00017 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hydrolase_like,PNK3P DYD3_k127_2753260_0 700598.Niako_2551 1.042e-145 469.0 28P29@1|root,2ZBYD@2|Bacteria,4NMK6@976|Bacteroidetes,1IRUJ@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2753260_4 471854.Dfer_3663 2.42e-48 183.0 COG5276@1|root,COG5276@2|Bacteria,4NG4W@976|Bacteroidetes,47K9R@768503|Cytophagia 976|Bacteroidetes S LVIVD repeat - - - - - - - - - - - - LVIVD DYD3_k127_2753260_6 700598.Niako_0208 4.626e-23 106.0 COG5276@1|root,COG5276@2|Bacteria,4NSVQ@976|Bacteroidetes,1IZBC@117747|Sphingobacteriia 976|Bacteroidetes S repeat protein - - - - - - - - - - - - LVIVD DYD3_k127_2753260_2 700598.Niako_2552 7.3e-82 277.0 COG3428@1|root,COG3428@2|Bacteria 2|Bacteria S Bacterial PH domain - - - ko:K08981 - - - - ko00000 - - - SHOCT,bPH_2 DYD3_k127_2753260_1 865937.Gilli_0828 7.71e-119 389.0 28HDX@1|root,2Z7QG@2|Bacteria,4NFID@976|Bacteroidetes,1HZD2@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2753781_4 1120968.AUBX01000015_gene3557 2.42e-26 109.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,47JJJ@768503|Cytophagia 976|Bacteroidetes P TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2753781_1 471854.Dfer_0301 4.102e-261 818.0 COG1435@1|root,COG1435@2|Bacteria,4NE0A@976|Bacteroidetes,47JJB@768503|Cytophagia 976|Bacteroidetes F PFAM RagB SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_2753781_0 925409.KI911562_gene669 0.0 1619.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IP40@117747|Sphingobacteriia 976|Bacteroidetes S SPTR ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_2753781_2 925409.KI911562_gene668 2.429e-195 617.0 COG0671@1|root,COG0671@2|Bacteria,4NF9W@976|Bacteroidetes,1IRE2@117747|Sphingobacteriia 976|Bacteroidetes I PAP2 superfamily - - - - - - - - - - - - PAP2 DYD3_k127_2753781_3 1123248.KB893314_gene3552 4.105e-161 518.0 COG3291@1|root,COG3291@2|Bacteria,4PKMJ@976|Bacteroidetes,1IVVT@117747|Sphingobacteriia 976|Bacteroidetes G Cellulase N-terminal ig-like domain - GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0033946,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0052736,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - CelD_N,Glyco_hydro_9 DYD3_k127_2760105_0 700598.Niako_1418 2.508e-270 835.0 COG0376@1|root,COG0376@2|Bacteria,4NG30@976|Bacteroidetes,1IQZ2@117747|Sphingobacteriia 976|Bacteroidetes P Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity katG - 1.11.1.21 ko:K03782 ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110 - R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906 RC00034,RC00213,RC00767,RC02141 ko00000,ko00001,ko01000 - - - peroxidase DYD3_k127_2760105_1 714943.Mucpa_1386 9.266e-72 269.0 COG0265@1|root,COG1404@1|root,COG0265@2|Bacteria,COG1404@2|Bacteria,4PKT1@976|Bacteroidetes,1IW78@117747|Sphingobacteriia 976|Bacteroidetes O Trypsin-like peptidase domain - - 3.4.21.50 ko:K01337 - - - - ko00000,ko01000,ko01002 - - - Trypsin_2,fn3 DYD3_k127_2760688_0 700598.Niako_1590 3.544e-165 528.0 COG1835@1|root,COG1835@2|Bacteria,4NHPE@976|Bacteroidetes,1IRRT@117747|Sphingobacteriia 976|Bacteroidetes I Acyltransferase family - - - ko:K11941 - - - - ko00000,ko01000 - - - Acyl_transf_3 DYD3_k127_2760688_1 925409.KI911562_gene1348 1.203e-140 454.0 COG2972@1|root,COG2972@2|Bacteria,4NFJ1@976|Bacteroidetes,1IWFE@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_2760688_2 700598.Niako_1588 8.676e-121 391.0 COG3279@1|root,COG3279@2|Bacteria,4NF8U@976|Bacteroidetes,1IUY9@117747|Sphingobacteriia 976|Bacteroidetes T LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_2760688_3 1185876.BN8_03780 5.4e-52 205.0 COG2374@1|root,COG3250@1|root,COG3509@1|root,COG4733@1|root,COG5297@1|root,COG2374@2|Bacteria,COG3250@2|Bacteria,COG3509@2|Bacteria,COG4733@2|Bacteria,COG5297@2|Bacteria 2|Bacteria G Belongs to the glycosyl hydrolase family 6 xynX1 - 3.1.3.8,3.2.1.23 ko:K01083,ko:K01190 ko00052,ko00511,ko00562,ko00600,ko01100,map00052,map00511,map00562,map00600,map01100 - R01105,R01678,R03355,R03371,R04783,R06114 RC00049,RC00078,RC00452 ko00000,ko00001,ko01000 - - - Exo_endo_phos,F5_F8_type_C,LTD,Laminin_G_3,SLH DYD3_k127_2763525_0 471854.Dfer_4857 3.748e-160 533.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_2763525_1 471854.Dfer_1450 1.751e-94 318.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2776067_1 700598.Niako_4136 7.104e-31 123.0 COG0705@1|root,COG0705@2|Bacteria,4NECA@976|Bacteroidetes,1IS27@117747|Sphingobacteriia 976|Bacteroidetes S Rhomboid family - - - - - - - - - - - - Rhomboid DYD3_k127_2776067_2 925409.KI911562_gene673 6.938e-25 111.0 COG1595@1|root,COG1595@2|Bacteria,4NM7Z@976|Bacteroidetes,1IRV9@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_2776067_0 929556.Solca_1240 8.129e-40 160.0 COG3712@1|root,COG3712@2|Bacteria,4NP2Y@976|Bacteroidetes,1ISC6@117747|Sphingobacteriia 976|Bacteroidetes PT Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_2776067_3 1279009.ADICEAN_04232 5.261e-06 53.0 COG1629@1|root,COG1629@2|Bacteria 2|Bacteria P transport - - - - - - - - - - - - CarbopepD_reg_2,OMP_b-brl_3 DYD3_k127_2780065_3 1284352.AOIG01000014_gene3469 7.425e-16 88.0 2DSXI@1|root,33HTX@2|Bacteria,1W443@1239|Firmicutes,4I11H@91061|Bacilli 91061|Bacilli S Pentapeptide repeats (9 copies) - - - - - - - - - - - - Pentapeptide_4 DYD3_k127_2780065_0 929713.NIASO_04755 1.191e-218 684.0 COG0673@1|root,COG0673@2|Bacteria,4NHDZ@976|Bacteroidetes 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA,TAT_signal DYD3_k127_2780065_1 1122605.KB893627_gene2857 9.536e-114 371.0 COG2133@1|root,COG2133@2|Bacteria,4NIMV@976|Bacteroidetes,1ISA9@117747|Sphingobacteriia 976|Bacteroidetes G Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_2780065_2 700598.Niako_3688 6.208e-86 289.0 COG1132@1|root,COG1132@2|Bacteria,4NDY6@976|Bacteroidetes,1IPDM@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter mdlA - - ko:K18889 ko02010,map02010 M00707 - - ko00000,ko00001,ko00002,ko02000 3.A.1.106.13,3.A.1.106.5 - - ABC_membrane,ABC_tran DYD3_k127_2780845_3 1122621.ATZA01000009_gene312 5.691e-73 254.0 2BX9T@1|root,2Z83P@2|Bacteria,4NFAA@976|Bacteroidetes,1INWI@117747|Sphingobacteriia 976|Bacteroidetes S SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_2780845_0 1122621.ATZA01000009_gene311 3.895e-245 774.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1IP91@117747|Sphingobacteriia 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2780845_2 714943.Mucpa_4569 2.125e-102 346.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1IP91@117747|Sphingobacteriia 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2780845_1 761193.Runsl_5551 1.665e-152 492.0 COG2377@1|root,COG2377@2|Bacteria,4NFZU@976|Bacteroidetes,47NI9@768503|Cytophagia 976|Bacteroidetes O Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling anmK - 2.7.1.170 ko:K09001 - - - - ko00000,ko01000 - - - AnmK DYD3_k127_2780845_4 700598.Niako_7208 1.083e-53 193.0 COG0262@1|root,COG0262@2|Bacteria,4NSY9@976|Bacteroidetes,1J05F@117747|Sphingobacteriia 976|Bacteroidetes H bifunctional deaminase-reductase domain protein - - - - - - - - - - - - RibD_C DYD3_k127_2783408_0 700598.Niako_2184 3.292e-304 935.0 COG0441@1|root,COG0441@2|Bacteria,4NEFT@976|Bacteroidetes,1IPWX@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) thrS GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 ko:K01868 ko00970,map00970 M00359,M00360 R03663 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD DYD3_k127_2783408_2 700598.Niako_2186 1.194e-41 155.0 2EPP0@1|root,33H9M@2|Bacteria,4NXT6@976|Bacteroidetes,1IYX8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2790659_2 700598.Niako_5317 3.433e-26 108.0 COG3526@1|root,COG3526@2|Bacteria,4NSBW@976|Bacteroidetes,1ITF7@117747|Sphingobacteriia 976|Bacteroidetes O TIGRFAM selT selW selH selenoprotein domain - - - ko:K07401 - - - - ko00000 - - - Rdx DYD3_k127_2790659_1 1150600.ADIARSV_0853 8.252e-55 197.0 COG0314@1|root,COG0314@2|Bacteria,4NP1X@976|Bacteroidetes,1IUNA@117747|Sphingobacteriia 976|Bacteroidetes H MoaE protein moaE - 2.8.1.12 ko:K03635 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09395 RC02507 ko00000,ko00001,ko01000 - - - MoaE DYD3_k127_2790659_3 714943.Mucpa_5271 2.908e-13 72.0 COG1977@1|root,COG1977@2|Bacteria,4NYW9@976|Bacteroidetes,1J02D@117747|Sphingobacteriia 976|Bacteroidetes H ThiS family - - - ko:K03636 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS DYD3_k127_2790659_0 700598.Niako_5318 3.216e-72 248.0 COG0155@1|root,COG1773@1|root,COG0155@2|Bacteria,COG1773@2|Bacteria,4NHF0@976|Bacteroidetes,1IQWP@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Rubredoxin-type Fe(Cys)4 protein rubR - - - - - - - - - - - Rubredoxin DYD3_k127_2809918_0 1166018.FAES_3599 1.222e-256 816.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,47KT8@768503|Cytophagia 976|Bacteroidetes P TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_2809918_1 485918.Cpin_1588 6.658e-86 295.0 COG3712@1|root,COG3712@2|Bacteria,4NKN5@976|Bacteroidetes,1IY84@117747|Sphingobacteriia 976|Bacteroidetes PT Anti-FecI sigma factor, FecR - - - - - - - - - - - - DUF4974,FecR DYD3_k127_2809918_2 485918.Cpin_1587 1.314e-27 115.0 COG1595@1|root,COG1595@2|Bacteria,4NR0P@976|Bacteroidetes 976|Bacteroidetes K RNA polymerase sigma-70 factor - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_2816077_3 929562.Emtol_2303 2.568e-08 61.0 COG0793@1|root,COG0793@2|Bacteria,4NFK4@976|Bacteroidetes,47KAN@768503|Cytophagia 976|Bacteroidetes M Belongs to the peptidase S41A family - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - DUF3340,PDZ,Peptidase_S41 DYD3_k127_2816077_0 700598.Niako_2069 2.262e-277 864.0 COG1132@1|root,COG1132@2|Bacteria,4PKCT@976|Bacteroidetes,1IQ3V@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter - - - ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106 - - ABC_membrane,ABC_tran DYD3_k127_2816077_1 700598.Niako_2071 6.617e-149 478.0 COG0837@1|root,COG0837@2|Bacteria,4NGYX@976|Bacteroidetes,1IRRS@117747|Sphingobacteriia 976|Bacteroidetes G Glucokinase glk - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Glucokinase DYD3_k127_2816077_2 700598.Niako_2072 2.572e-95 317.0 COG1680@1|root,COG1680@2|Bacteria,4NHJN@976|Bacteroidetes 976|Bacteroidetes V COG1680 Beta-lactamase class C and other penicillin binding - - - - - - - - - - - - Beta-lactamase DYD3_k127_281670_0 743722.Sph21_4314 2.857e-160 520.0 COG0577@1|root,COG0577@2|Bacteria,4NGQQ@976|Bacteroidetes 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_28193_1 1270196.JCKI01000003_gene2266 5.406e-72 252.0 COG2374@1|root,COG3210@1|root,COG3291@1|root,COG4733@1|root,COG4932@1|root,COG2374@2|Bacteria,COG3210@2|Bacteria,COG3291@2|Bacteria,COG4733@2|Bacteria,COG4932@2|Bacteria,4NTNN@976|Bacteroidetes,1J0H7@117747|Sphingobacteriia 976|Bacteroidetes MU C-terminal domain of CHU protein family - - - - - - - - - - - - CHU_C,LTD DYD3_k127_28193_0 1121481.AUAS01000020_gene5195 8.645e-122 399.0 COG1283@1|root,COG1283@2|Bacteria,4NHMY@976|Bacteroidetes,47N3M@768503|Cytophagia 976|Bacteroidetes P Na+/Pi-cotransporter - - - ko:K03324 - - - - ko00000,ko02000 2.A.58.2 - - Na_Pi_cotrans,PhoU DYD3_k127_28193_2 700598.Niako_5125 2.008e-59 210.0 COG0360@1|root,COG0360@2|Bacteria,4NQ9W@976|Bacteroidetes,1ISJI@117747|Sphingobacteriia 976|Bacteroidetes J Binds together with S18 to 16S ribosomal RNA rpsF GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - ko:K02990 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S6 DYD3_k127_28193_4 700598.Niako_5126 3.982e-45 164.0 COG0238@1|root,COG0238@2|Bacteria,4NSAR@976|Bacteroidetes,1ISSH@117747|Sphingobacteriia 976|Bacteroidetes J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit rpsR GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02963 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S18 DYD3_k127_28193_3 700598.Niako_5127 7.49e-47 170.0 COG0359@1|root,COG0359@2|Bacteria,4NNRP@976|Bacteroidetes,1IRUM@117747|Sphingobacteriia 976|Bacteroidetes J binds to the 23S rRNA rplI GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02939 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L9_C,Ribosomal_L9_N DYD3_k127_282028_2 1123035.ARLA01000026_gene164 1.04e-27 128.0 COG0526@1|root,COG0526@2|Bacteria,4NH2A@976|Bacteroidetes,1HXIW@117743|Flavobacteriia 976|Bacteroidetes O Thioredoxin - - - - - - - - - - - - AhpC-TSA,Redoxin,Thioredoxin_8 DYD3_k127_282028_1 1267211.KI669560_gene1251 2.245e-192 610.0 COG5520@1|root,COG5520@2|Bacteria,4NF4C@976|Bacteroidetes,1IPDB@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 30 family - - 3.2.1.45 ko:K01201 ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142 - R01498 RC00059,RC00451 ko00000,ko00001,ko01000 - GH30 - Glyco_hydro_30,Glyco_hydro_30C DYD3_k127_282028_0 1408813.AYMG01000039_gene2220 3.109e-215 679.0 COG5520@1|root,COG5520@2|Bacteria,4NF4C@976|Bacteroidetes,1INPD@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 30 family - - 3.2.1.45 ko:K01201 ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142 - R01498 RC00059,RC00451 ko00000,ko00001,ko01000 - GH30 - Glyco_hydro_30,Glyco_hydro_30C DYD3_k127_2836168_1 762903.Pedsa_3724 3.805e-19 101.0 COG3391@1|root,COG4733@1|root,COG3391@2|Bacteria,COG4733@2|Bacteria,4PMUD@976|Bacteroidetes,1IS0D@117747|Sphingobacteriia 976|Bacteroidetes S Fibronectin type III domain protein - - - - - - - - - - - - Laminin_G_3 DYD3_k127_2836168_3 1229276.DI53_0096 4.558e-10 72.0 COG4099@1|root,COG4099@2|Bacteria,4NFSH@976|Bacteroidetes,1IT9P@117747|Sphingobacteriia 976|Bacteroidetes S Phospholipase/Carboxylesterase - - - - - - - - - - - - Abhydrolase_2,Esterase_phd,Peptidase_S9 DYD3_k127_2836168_0 1356852.N008_15150 1.146e-21 109.0 COG2353@1|root,COG4677@1|root,COG2353@2|Bacteria,COG4677@2|Bacteria,4PP17@976|Bacteroidetes,47YSH@768503|Cytophagia 976|Bacteroidetes G YceI-like domain - - - - - - - - - - - - - DYD3_k127_2836168_2 502025.Hoch_6203 1.406e-12 80.0 COG4099@1|root,COG4099@2|Bacteria,1RHBS@1224|Proteobacteria,431BR@68525|delta/epsilon subdivisions,2WX0J@28221|Deltaproteobacteria,2Z1FR@29|Myxococcales 28221|Deltaproteobacteria S Alpha/beta hydrolase family - - - - - - - - - - - - DLH DYD3_k127_2845869_3 1288963.ADIS_4668 6.286e-26 111.0 COG0457@1|root,COG0457@2|Bacteria,4NXAA@976|Bacteroidetes,47XR9@768503|Cytophagia 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - DUF4071 DYD3_k127_2845869_2 10228.TriadP57729 1.034e-32 142.0 2CMTJ@1|root,2QRWJ@2759|Eukaryota,39SVI@33154|Opisthokonta,3BNJ9@33208|Metazoa 33208|Metazoa S TIR domain - - - - - - - - - - - - TIR_2 DYD3_k127_2845869_0 700598.Niako_6375 1.023e-71 244.0 COG1522@1|root,COG1522@2|Bacteria,4NMPD@976|Bacteroidetes,1ISU0@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - ko:K03719 - - - - ko00000,ko03000,ko03036 - - - AsnC_trans_reg,HTH_24,HTH_AsnC-type DYD3_k127_2845869_1 700598.Niako_6374 5.075e-54 193.0 COG0697@1|root,COG0697@2|Bacteria,4NGJR@976|Bacteroidetes,1IPGU@117747|Sphingobacteriia 976|Bacteroidetes EG PFAM EamA-like transporter family - - - - - - - - - - - - EamA DYD3_k127_2854393_2 700598.Niako_4418 3.282e-124 400.0 28KKN@1|root,2ZA5E@2|Bacteria,4NMKH@976|Bacteroidetes,1IPIE@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2854393_3 1120965.AUBV01000003_gene378 1.747e-25 112.0 COG0406@1|root,COG0406@2|Bacteria,4NQWA@976|Bacteroidetes,47SDA@768503|Cytophagia 976|Bacteroidetes G Phosphoglycerate mutase family - - - - - - - - - - - - His_Phos_1 DYD3_k127_2854393_1 468059.AUHA01000003_gene1779 7.906e-153 494.0 COG0508@1|root,COG0508@2|Bacteria,4NED0@976|Bacteroidetes,1IP3U@117747|Sphingobacteriia 976|Bacteroidetes C Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex bfmBB - 2.3.1.61 ko:K00658 ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R02570,R02571,R08549 RC00004,RC02727,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding DYD3_k127_2854393_0 700598.Niako_4416 2.814e-153 488.0 COG1058@1|root,COG1546@1|root,COG1058@2|Bacteria,COG1546@2|Bacteria,4NDVV@976|Bacteroidetes,1INYU@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the CinA family cinA - 3.5.1.42 ko:K03742,ko:K03743 ko00760,map00760 - R02322 RC00100 ko00000,ko00001,ko01000 - - - CinA,MoCF_biosynth DYD3_k127_2856558_0 700598.Niako_6274 8.637e-257 796.0 COG0210@1|root,COG0210@2|Bacteria,4NDWN@976|Bacteroidetes,1IP3C@117747|Sphingobacteriia 976|Bacteroidetes L DNA helicase pcrA - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C DYD3_k127_2864971_0 391596.PBAL39_13367 0.0 1075.0 COG2304@1|root,COG3188@1|root,COG2304@2|Bacteria,COG3188@2|Bacteria,4NHVA@976|Bacteroidetes,1IPIV@117747|Sphingobacteriia 976|Bacteroidetes NU oxidoreductase activity - - - - - - - - - - - - PA14 DYD3_k127_2872181_4 700598.Niako_0288 3.174e-37 142.0 2CG1Y@1|root,333IH@2|Bacteria,4NVMK@976|Bacteroidetes,1ISW4@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1573) - - - - - - - - - - - - DUF1573 DYD3_k127_2872181_2 1237149.C900_03653 1.789e-63 224.0 COG0346@1|root,COG0346@2|Bacteria,4NQCJ@976|Bacteroidetes,47QR5@768503|Cytophagia 976|Bacteroidetes E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - - - - - - - - - - Glyoxalase DYD3_k127_2872181_3 1237149.C900_03654 9.398e-50 181.0 COG2207@1|root,COG2207@2|Bacteria,4NPKU@976|Bacteroidetes,47SE6@768503|Cytophagia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18,HTH_AraC DYD3_k127_2872181_0 700598.Niako_0287 1.97e-219 686.0 COG0436@1|root,COG0436@2|Bacteria,4NG6G@976|Bacteroidetes,1IPSR@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Aminotransferase class I and II aspC - 2.6.1.1,2.6.1.2,2.6.1.66 ko:K00812,ko:K14260 ko00220,ko00250,ko00270,ko00290,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00290,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00258,R00355,R00694,R00734,R00896,R01215,R02433,R02619,R05052 RC00006,RC00008,RC00036 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_2872181_1 1237149.C900_01498 1.748e-82 297.0 COG4251@1|root,COG5000@1|root,COG4251@2|Bacteria,COG5000@2|Bacteria,4NDUQ@976|Bacteroidetes,47PTN@768503|Cytophagia 976|Bacteroidetes T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - CHASE3,GAF_2,HAMP,HATPase_c,HisKA,PAS_3,PAS_9,Response_reg DYD3_k127_2872181_5 1121104.AQXH01000001_gene1856 2.129e-19 90.0 COG0745@1|root,COG0745@2|Bacteria,4NRCB@976|Bacteroidetes 976|Bacteroidetes T COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - Response_reg DYD3_k127_2875073_5 1150600.ADIARSV_3468 8.324e-31 126.0 COG4314@1|root,COG4314@2|Bacteria,4NIPU@976|Bacteroidetes,1IR80@117747|Sphingobacteriia 976|Bacteroidetes C lipoprotein involved in nitrous oxide reduction - - - ko:K19342 - - - - ko00000 - - - NosL DYD3_k127_2875073_0 925409.KI911562_gene942 2.929e-169 541.0 COG3420@1|root,COG3420@2|Bacteria,4NEGT@976|Bacteroidetes,1IRBN@117747|Sphingobacteriia 976|Bacteroidetes P PFAM Periplasmic copper-binding protein (NosD) nosD - - ko:K07218 - - - - ko00000 - - - NosD DYD3_k127_2875073_1 925409.KI911562_gene943 8.503e-124 400.0 COG1131@1|root,COG1131@2|Bacteria,4NG9T@976|Bacteroidetes,1IPBT@117747|Sphingobacteriia 976|Bacteroidetes V ABC-type multidrug transport system ATPase component - - - ko:K19340 ko02010,map02010 M00762 - - ko00000,ko00001,ko00002,ko02000 3.A.1.132.2 - - ABC_tran DYD3_k127_2875073_2 925409.KI911562_gene944 3.538e-120 390.0 COG1277@1|root,COG1277@2|Bacteria,4NGGR@976|Bacteroidetes,1IPGQ@117747|Sphingobacteriia 976|Bacteroidetes S nitrous oxide - - - ko:K19341 ko02010,map02010 M00762 - - ko00000,ko00001,ko00002,ko02000 3.A.1.132.2 - - ABC2_membrane_2,ABC2_membrane_5 DYD3_k127_2875073_3 1406840.Q763_14335 2.194e-102 345.0 COG0530@1|root,COG0530@2|Bacteria,4NFBC@976|Bacteroidetes,1IC39@117743|Flavobacteriia,2NY56@237|Flavobacterium 976|Bacteroidetes P Sodium/calcium exchanger protein yrbG - - ko:K07301 - - - - ko00000,ko02000 2.A.19.5 - - Na_Ca_ex DYD3_k127_2875073_6 929713.NIASO_03840 0.0002152 45.0 COG1595@1|root,COG1595@2|Bacteria,4NNBY@976|Bacteroidetes,1IZA0@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_2877611_3 1052684.PPM_2466 0.0006635 51.0 COG2730@1|root,COG3325@1|root,COG4733@1|root,COG5498@1|root,COG2730@2|Bacteria,COG3325@2|Bacteria,COG4733@2|Bacteria,COG5498@2|Bacteria,1TUDC@1239|Firmicutes,4IPQ2@91061|Bacilli,26S81@186822|Paenibacillaceae 91061|Bacilli G Endoglucanase celN - 3.2.1.78 ko:K01218 ko00051,ko02024,map00051,map02024 - R01332 RC00467 ko00000,ko00001,ko01000 - GH26 - Cellulase,F5_F8_type_C,RicinB_lectin_2,fn3 DYD3_k127_2877611_1 398512.JQKC01000040_gene4112 2.311e-56 208.0 COG5520@1|root,COG5520@2|Bacteria,1TQ4E@1239|Firmicutes,24F5K@186801|Clostridia,3WH0J@541000|Ruminococcaceae 186801|Clostridia M O-Glycosyl hydrolase family 30 - - - - - - - - - - - - Dockerin_1,F5_F8_type_C,Glyco_hydr_30_2,Glyco_hydro_30C DYD3_k127_2877611_2 1514668.JOOA01000002_gene1530 2.806e-31 132.0 COG5520@1|root,COG5520@2|Bacteria,1TQ4E@1239|Firmicutes,24C60@186801|Clostridia,3WRMT@541000|Ruminococcaceae 186801|Clostridia M O-Glycosyl hydrolase family 30 - - - - - - - - - - - - Big_4,CW_binding_1,F5_F8_type_C,FIVAR,Glyco_hydr_30_2,Glyco_hydro_43 DYD3_k127_2877611_0 1229276.DI53_2869 7.178e-60 215.0 COG0526@1|root,COG0526@2|Bacteria,4NS44@976|Bacteroidetes,1IYYE@117747|Sphingobacteriia 976|Bacteroidetes CO Thioredoxin - - - - - - - - - - - - AhpC-TSA,DUF3738 DYD3_k127_2880167_0 700598.Niako_5138 0.0 1238.0 COG0308@1|root,COG1413@1|root,COG0308@2|Bacteria,COG1413@2|Bacteria,4NFTN@976|Bacteroidetes,1INM2@117747|Sphingobacteriia 976|Bacteroidetes CE PFAM Peptidase M1 membrane alanine aminopeptidase pepN - 3.4.11.2 ko:K01256 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - HEAT_2,Peptidase_M1 DYD3_k127_2886008_1 700598.Niako_6545 5.733e-100 329.0 COG1703@1|root,COG1703@2|Bacteria,4NE7Y@976|Bacteroidetes,1IQ92@117747|Sphingobacteriia 976|Bacteroidetes E LAO AO transport system ATPase - - - ko:K07588 - - - - ko00000,ko01000 - - - ArgK DYD3_k127_2886008_0 1356852.N008_03515 8.141e-120 393.0 COG0463@1|root,COG0463@2|Bacteria,4NEZP@976|Bacteroidetes,47MB5@768503|Cytophagia 976|Bacteroidetes M Glycosyl transferase, family 2 - - - - - - - - - - - - Glyco_tranf_2_4 DYD3_k127_2886008_2 485918.Cpin_0508 3.953e-19 86.0 COG2802@1|root,COG2802@2|Bacteria,4NEJU@976|Bacteroidetes,1IY3D@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase S16 lon domain protein - - 3.4.21.53 ko:K01338,ko:K07157 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - LON_substr_bdg DYD3_k127_2891591_1 700598.Niako_0126 1.656e-116 383.0 COG2067@1|root,COG2067@2|Bacteria,4PJ15@976|Bacteroidetes,1IXNX@117747|Sphingobacteriia 976|Bacteroidetes I Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl DYD3_k127_2891591_2 1267211.KI669560_gene1273 5.582e-55 196.0 COG2153@1|root,COG2153@2|Bacteria,4NQPR@976|Bacteroidetes,1IY4K@117747|Sphingobacteriia 976|Bacteroidetes S Acetyltransferase (GNAT) domain elaA - - ko:K02348 - - - - ko00000 - - - Acetyltransf_10 DYD3_k127_2891591_0 471854.Dfer_1403 4.779e-141 453.0 COG5285@1|root,COG5285@2|Bacteria,4NHQ6@976|Bacteroidetes,47NC5@768503|Cytophagia 976|Bacteroidetes Q Phytanoyl-CoA dioxygenase (PhyH) - - - - - - - - - - - - PhyH DYD3_k127_2891591_3 485918.Cpin_0165 1.945e-48 175.0 COG2256@1|root,COG2256@2|Bacteria,4NEV8@976|Bacteroidetes,1IPEJ@117747|Sphingobacteriia 976|Bacteroidetes L COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase ycaJ - - ko:K07478 - - - - ko00000 - - - AAA,AAA_assoc_2,MgsA_C,RuvB_N DYD3_k127_2895919_0 700598.Niako_6662 0.0 1105.0 COG0365@1|root,COG0365@2|Bacteria,4NEAD@976|Bacteroidetes,1IPSM@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA acsA - 6.2.1.1 ko:K01895 ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200 M00357 R00235,R00236,R00316,R00926,R01354 RC00004,RC00012,RC00043,RC00070,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACAS_N,AMP-binding,AMP-binding_C DYD3_k127_2895919_1 925409.KI911562_gene318 1.647e-183 576.0 COG0477@1|root,COG0477@2|Bacteria,4NFY1@976|Bacteroidetes,1IP90@117747|Sphingobacteriia 976|Bacteroidetes EGP transporter - - - - - - - - - - - - Sugar_tr DYD3_k127_2908248_0 700598.Niako_5744 3.228e-190 598.0 COG0216@1|root,COG0216@2|Bacteria,4NF72@976|Bacteroidetes,1IPKJ@117747|Sphingobacteriia 976|Bacteroidetes J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA prfA - - ko:K02835 - - - - ko00000,ko03012 - - - PCRF,RF-1 DYD3_k127_2908248_1 700598.Niako_5743 2.82e-159 511.0 COG0402@1|root,COG0402@2|Bacteria,4NJVU@976|Bacteroidetes,1IPAQ@117747|Sphingobacteriia 976|Bacteroidetes F amidohydrolase - - 3.5.4.40 ko:K20810 ko00130,ko01110,map00130,map01110 - R10695 RC00477 ko00000,ko00001,ko01000 - - - Amidohydro_1 DYD3_k127_2908248_2 700598.Niako_5742 4.068e-122 394.0 COG1381@1|root,COG1381@2|Bacteria,4NIBQ@976|Bacteroidetes,1IS4Q@117747|Sphingobacteriia 976|Bacteroidetes L Involved in DNA repair and RecF pathway recombination recO - - ko:K03584 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecO_C,RecO_N DYD3_k127_2911389_4 700598.Niako_6307 3.757e-60 213.0 COG3832@1|root,COG3832@2|Bacteria,4PAUN@976|Bacteroidetes,1IYZG@117747|Sphingobacteriia 976|Bacteroidetes S Polyketide cyclase / dehydrase and lipid transport - - - - - - - - - - - - Polyketide_cyc2 DYD3_k127_2911389_1 700598.Niako_6306 2.531e-114 371.0 COG0694@1|root,COG0694@2|Bacteria,4NG0Q@976|Bacteroidetes,1IQ4T@117747|Sphingobacteriia 976|Bacteroidetes O PFAM Scaffold protein Nfu NifU N terminal - - - - - - - - - - - - Nfu_N,NifU DYD3_k127_2911389_5 700598.Niako_6305 7.301e-60 209.0 2DNMN@1|root,32Y54@2|Bacteria,4NW3V@976|Bacteroidetes,1IYIN@117747|Sphingobacteriia 976|Bacteroidetes S MerC mercury resistance protein - - - - - - - - - - - - MerC DYD3_k127_2911389_2 700598.Niako_6304 4.05e-88 295.0 COG1999@1|root,COG1999@2|Bacteria,4NFH2@976|Bacteroidetes 976|Bacteroidetes S protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems - - - ko:K07152 - - - - ko00000,ko03029 - - - SCO1-SenC DYD3_k127_2911389_3 700598.Niako_6303 1.112e-67 231.0 COG0735@1|root,COG0735@2|Bacteria,4NSES@976|Bacteroidetes,1ITGU@117747|Sphingobacteriia 976|Bacteroidetes P Belongs to the Fur family - - - ko:K03711 - - - - ko00000,ko03000 - - - FUR DYD3_k127_2911389_0 700598.Niako_6302 3.036e-320 986.0 COG1164@1|root,COG1164@2|Bacteria,4NFYH@976|Bacteroidetes,1INVA@117747|Sphingobacteriia 976|Bacteroidetes E Oligoendopeptidase F pepF - - ko:K08602 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M3,Peptidase_M3_N DYD3_k127_2936497_0 1358423.N180_11660 2.908e-212 670.0 COG3250@1|root,COG3250@2|Bacteria,4NEWN@976|Bacteroidetes,1IP7K@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 2 family - - - - - - - - - - - - DUF4982,Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N DYD3_k127_2947370_1 700598.Niako_2564 1.11e-90 303.0 COG3034@1|root,COG3034@2|Bacteria,4NNK3@976|Bacteroidetes,1ISMP@117747|Sphingobacteriia 976|Bacteroidetes S ErfK YbiS YcfS YnhG family protein - - - - - - - - - - - - YkuD DYD3_k127_2947370_0 700598.Niako_2562 1.698e-190 602.0 COG1640@1|root,COG1640@2|Bacteria,4NF7Z@976|Bacteroidetes,1IPKN@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase, family 77 malQ - 2.4.1.25 ko:K00705 ko00500,ko01100,map00500,map01100 - R05196 RC00049 ko00000,ko00001,ko01000 - GH77 - CBM_20,Glyco_hydro_77 DYD3_k127_2949840_2 391625.PPSIR1_29810 2.7e-36 153.0 COG1196@1|root,COG1572@1|root,COG2931@1|root,COG1196@2|Bacteria,COG1572@2|Bacteria,COG2931@2|Bacteria,1NFCP@1224|Proteobacteria 1224|Proteobacteria M Concanavalin A-like lectin/glucanases superfamily - - - - - - - - - - - - Laminin_G_3 DYD3_k127_2949840_0 1185876.BN8_01048 5.013e-60 221.0 COG2972@1|root,COG2972@2|Bacteria,4NKGJ@976|Bacteroidetes,47K6S@768503|Cytophagia 976|Bacteroidetes T regulator of cell autolysis - - - - - - - - - - - - His_kinase DYD3_k127_2949840_1 485918.Cpin_5858 1.245e-54 196.0 COG1881@1|root,COG1881@2|Bacteria,4NH14@976|Bacteroidetes 976|Bacteroidetes S TIGRFAM Raf kinase inhibitor-like protein, YbhB YbcL family - - - ko:K06910 - - - - ko00000 - - - PBP DYD3_k127_2958651_0 313606.M23134_08279 2.091e-21 102.0 COG1361@1|root,COG1409@1|root,COG2931@1|root,COG3420@1|root,COG4886@1|root,COG1361@2|Bacteria,COG1409@2|Bacteria,COG2931@2|Bacteria,COG3420@2|Bacteria,COG4886@2|Bacteria,4PMET@976|Bacteroidetes 976|Bacteroidetes Q Concanavalin A-like lectin/glucanases superfamily - - - - - - - - - - - - Laminin_G_3 DYD3_k127_2958651_1 439493.PB7211_173 3.173e-17 86.0 COG0345@1|root,COG0345@2|Bacteria,1RGVZ@1224|Proteobacteria,2UDT5@28211|Alphaproteobacteria 28211|Alphaproteobacteria E NADP oxidoreductase coenzyme F420-dependent proC - 1.5.1.2 ko:K00286 ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230 M00015 R01248,R01251,R03291,R03293 RC00054,RC00083 ko00000,ko00001,ko00002,ko01000 - - - F420_oxidored,P5CR_dimer DYD3_k127_2961384_0 700598.Niako_6493 4.773e-61 214.0 COG2267@1|root,COG2267@2|Bacteria,4NPD2@976|Bacteroidetes,1ITX3@117747|Sphingobacteriia 976|Bacteroidetes I PFAM alpha beta hydrolase fold - - - - - - - - - - - - Abhydrolase_1,Hydrolase_4 DYD3_k127_2961384_1 504472.Slin_3296 5.933e-20 103.0 COG2755@1|root,COG2755@2|Bacteria,4NJGD@976|Bacteroidetes,47VZA@768503|Cytophagia 976|Bacteroidetes E GDSL-like Lipase/Acylhydrolase family - - - - - - - - - - - - Lipase_GDSL_2 DYD3_k127_2975590_1 700598.Niako_1547 3.516e-56 198.0 COG0152@1|root,COG0152@2|Bacteria,4NF1Z@976|Bacteroidetes,1INM8@117747|Sphingobacteriia 976|Bacteroidetes F Phosphoribosylaminoimidazolesuccinocarboxamide synthase purC GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 ko:K01923 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04591 RC00064,RC00162 ko00000,ko00001,ko00002,ko01000 - - - SAICAR_synt DYD3_k127_2975590_0 700598.Niako_1548 0.0 1223.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,4NDX3@976|Bacteroidetes,1IPS9@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug domain - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_2979899_0 700598.Niako_4953 3.916e-306 956.0 COG1572@1|root,COG1572@2|Bacteria,4NFAX@976|Bacteroidetes,1IUXA@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase family C25 - - - - - - - - - - - - CARDB,FlgD_ig,ILEI,Peptidase_C25 DYD3_k127_2979899_1 700598.Niako_4954 1.495e-194 611.0 COG2067@1|root,COG2067@2|Bacteria,4NE43@976|Bacteroidetes,1IR38@117747|Sphingobacteriia 976|Bacteroidetes I long-chain fatty acid transport protein - - - - - - - - - - - - - DYD3_k127_2982503_1 700598.Niako_5104 4.99e-133 424.0 COG2197@1|root,COG2197@2|Bacteria,4NKAD@976|Bacteroidetes,1IT3A@117747|Sphingobacteriia 976|Bacteroidetes K Two component transcriptional regulator, LuxR family - - - - - - - - - - - - GerE,Response_reg DYD3_k127_2982503_0 1185876.BN8_00883 1.619e-254 807.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_2982503_3 700598.Niako_5106 1.01e-127 409.0 COG2057@1|root,COG2057@2|Bacteria,4NG9J@976|Bacteroidetes,1IQBC@117747|Sphingobacteriia 976|Bacteroidetes I PFAM Coenzyme A transferase scoB - 2.8.3.5,2.8.3.6 ko:K01029,ko:K01032 ko00072,ko00280,ko00362,ko00650,ko01100,ko01120,map00072,map00280,map00362,map00650,map01100,map01120 - R00410,R02990 RC00014 ko00000,ko00001,ko01000 - - - CoA_trans DYD3_k127_2982503_2 700598.Niako_5107 7.357e-133 425.0 COG1788@1|root,COG1788@2|Bacteria,4NF3T@976|Bacteroidetes,1IQP0@117747|Sphingobacteriia 976|Bacteroidetes I PFAM Coenzyme A transferase scoA - 2.8.3.5,2.8.3.6,2.8.3.8,2.8.3.9 ko:K01027,ko:K01028,ko:K01031,ko:K01034 ko00072,ko00280,ko00310,ko00362,ko00627,ko00640,ko00650,ko01100,ko01120,ko02020,map00072,map00280,map00310,map00362,map00627,map00640,map00650,map01100,map01120,map02020 - R00410,R01179,R01359,R01365,R02990,R07832 RC00012,RC00014 ko00000,ko00001,ko01000 - - - CoA_trans DYD3_k127_2982503_6 700598.Niako_5109 1.268e-16 79.0 28HA8@1|root,2Z7MQ@2|Bacteria,4NEJD@976|Bacteroidetes,1IPUY@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4835) - - - - - - - - - - - - DUF4835 DYD3_k127_2983382_0 700598.Niako_4718 0.0 1330.0 COG3968@1|root,COG3968@2|Bacteria,4NG2B@976|Bacteroidetes,1INRQ@117747|Sphingobacteriia 976|Bacteroidetes S glutamine synthetase glnA - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - GSIII_N,Gln-synt_C DYD3_k127_2983382_1 700598.Niako_4717 8.008e-80 274.0 28ICP@1|root,314Q6@2|Bacteria,4PIZD@976|Bacteroidetes,1IZ0B@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_2994211_3 1123248.KB893326_gene1452 2.294e-76 260.0 COG1082@1|root,COG1082@2|Bacteria,4NFMD@976|Bacteroidetes,1IVV3@117747|Sphingobacteriia 976|Bacteroidetes G Xylose isomerase-like TIM barrel - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_2994211_0 700598.Niako_6457 5.222e-265 823.0 COG3653@1|root,COG3653@2|Bacteria,4NHDD@976|Bacteroidetes,1IR8Z@117747|Sphingobacteriia 976|Bacteroidetes Q PFAM D-aminoacylase, C-terminal region - - 3.5.1.81 ko:K06015 - - R02192 RC00064,RC00328 ko00000,ko01000 - - - Amidohydro_3 DYD3_k127_2994211_2 118161.KB235922_gene2360 1.307e-115 390.0 COG1680@1|root,COG1680@2|Bacteria,1G5M7@1117|Cyanobacteria 1117|Cyanobacteria V Beta-lactamase class C - - - - - - - - - - - - Beta-lactamase,DUF3471 DYD3_k127_2994211_1 929703.KE386491_gene4114 7.771e-156 497.0 COG2366@1|root,COG2366@2|Bacteria,4NGXQ@976|Bacteroidetes,47JE7@768503|Cytophagia 976|Bacteroidetes S Penicillin amidase - - - - - - - - - - - - Penicil_amidase DYD3_k127_2999891_0 700598.Niako_1231 4.308e-204 647.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IP40@117747|Sphingobacteriia 976|Bacteroidetes S SPTR ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_2999891_1 700598.Niako_1227 1.255e-74 257.0 COG1595@1|root,COG1595@2|Bacteria,4NUGU@976|Bacteroidetes,1IZCG@117747|Sphingobacteriia 2|Bacteria K PFAM RNA polymerase sigma factor 70, region 4 type 2 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_3002159_2 700598.Niako_5035 3.008e-123 395.0 COG0334@1|root,COG0334@2|Bacteria,4NEBH@976|Bacteroidetes,1IPRA@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the Glu Leu Phe Val dehydrogenases family gdhA - 1.4.1.3 ko:K00261 ko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964 M00740 R00243,R00248 RC00006,RC02799 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ELFV_dehydrog,ELFV_dehydrog_N DYD3_k127_3002159_3 700598.Niako_5033 8.993e-106 347.0 COG0755@1|root,COG0755@2|Bacteria,4NFUS@976|Bacteroidetes,1INSK@117747|Sphingobacteriia 976|Bacteroidetes O PFAM Cytochrome c assembly protein ccmC - - ko:K02195 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - Cytochrom_C_asm DYD3_k127_3002159_4 700598.Niako_5032 3.597e-104 342.0 COG2386@1|root,COG2386@2|Bacteria,4NFQV@976|Bacteroidetes,1IP2M@117747|Sphingobacteriia 976|Bacteroidetes O PFAM Cytochrome c-type biogenesis protein CcmB ccmB - - ko:K02194 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - CcmB DYD3_k127_3002159_7 929556.Solca_4272 7.561e-05 54.0 2E676@1|root,330VQ@2|Bacteria,4NWHJ@976|Bacteroidetes,1ITZQ@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3002159_5 700598.Niako_5031 3.815e-101 332.0 COG1435@1|root,COG1435@2|Bacteria,4NE5R@976|Bacteroidetes,1IS2H@117747|Sphingobacteriia 976|Bacteroidetes F thymidine kinase tdk GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 ko:K00857 ko00240,ko00983,ko01100,map00240,map00983,map01100 - R01567,R02099,R08233 RC00002,RC00017 ko00000,ko00001,ko01000 - - - TK DYD3_k127_3002159_8 1501391.LG35_06260 0.0002874 51.0 2EKSY@1|root,33EGP@2|Bacteria,4NXJC@976|Bacteroidetes,2FVKV@200643|Bacteroidia 976|Bacteroidetes S COG NOG23390 non supervised orthologous group - - - - - - - - - - - - - DYD3_k127_3002159_0 700598.Niako_5029 1.544e-186 591.0 COG1519@1|root,COG1519@2|Bacteria,4NESA@976|Bacteroidetes,1IQKA@117747|Sphingobacteriia 976|Bacteroidetes M transferase waaA - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 ko:K02527 ko00540,ko01100,map00540,map01100 M00060,M00080 R04658,R05074,R09763 RC00009,RC00077,RC00247 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT30 - Glycos_transf_N DYD3_k127_3002159_1 700598.Niako_5028 3.944e-128 414.0 COG0399@1|root,COG0399@2|Bacteria,4NEBI@976|Bacteroidetes,1IQH3@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the DegT DnrJ EryC1 family degT - - - - - - - - - - - DegT_DnrJ_EryC1 DYD3_k127_3002800_2 700598.Niako_6592 2.304e-145 466.0 COG3637@1|root,COG3637@2|Bacteria,4NNPF@976|Bacteroidetes,1ISTC@117747|Sphingobacteriia 976|Bacteroidetes M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - OMP_b-brl DYD3_k127_3002800_1 700598.Niako_6591 6.304e-159 504.0 COG0061@1|root,COG0061@2|Bacteria,4NFG5@976|Bacteroidetes,1IPBF@117747|Sphingobacteriia 976|Bacteroidetes G Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP nadK - 2.7.1.23 ko:K00858 ko00760,ko01100,map00760,map01100 - R00104 RC00002,RC00078 ko00000,ko00001,ko01000 - - - NAD_kinase DYD3_k127_3002800_0 700598.Niako_6590 1.12e-218 687.0 COG4775@1|root,COG4775@2|Bacteria,4NF9Y@976|Bacteroidetes,1IWQ4@117747|Sphingobacteriia 976|Bacteroidetes M COG4775 Outer membrane protein protective antigen OMA87 - - - - - - - - - - - - Bac_surface_Ag,POTRA DYD3_k127_3002800_3 700598.Niako_6589 1.737e-112 365.0 COG0517@1|root,COG0517@2|Bacteria,4NF8G@976|Bacteroidetes,1IRUD@117747|Sphingobacteriia 976|Bacteroidetes S CBS domain - - - - - - - - - - - - CBS DYD3_k127_3002800_4 700598.Niako_6588 4.717e-24 101.0 COG2267@1|root,COG2267@2|Bacteria,4NF80@976|Bacteroidetes,1INU7@117747|Sphingobacteriia 976|Bacteroidetes I Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_3003599_0 1227266.HMPREF1551_00582 0.000122 53.0 COG3209@1|root,COG3209@2|Bacteria,4PHY2@976|Bacteroidetes,1IDNE@117743|Flavobacteriia,1EQ7G@1016|Capnocytophaga 976|Bacteroidetes M COG3209 Rhs family protein - - - - - - - - - - - - - DYD3_k127_3005747_2 1150600.ADIARSV_2123 3.411e-56 200.0 COG2731@1|root,COG2731@2|Bacteria,4NQU1@976|Bacteroidetes,1ISSV@117747|Sphingobacteriia 976|Bacteroidetes G Domain of unknown function (DUF386) - - - - - - - - - - - - DUF386 DYD3_k127_3005747_1 714943.Mucpa_3653 3.125e-104 342.0 COG0800@1|root,COG0800@2|Bacteria,4NEFY@976|Bacteroidetes,1IRQT@117747|Sphingobacteriia 976|Bacteroidetes G Aldolase - - 4.1.2.14,4.1.3.42 ko:K01625 ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200 M00008,M00061,M00308,M00631 R00470,R05605 RC00307,RC00308,RC00435 ko00000,ko00001,ko00002,ko01000 - - - Aldolase DYD3_k127_3005747_0 926549.KI421517_gene2830 1.132e-178 566.0 COG2271@1|root,COG2271@2|Bacteria,4NE7R@976|Bacteroidetes,47JBJ@768503|Cytophagia 976|Bacteroidetes G PFAM Major Facilitator Superfamily - - - ko:K08191 - - - - ko00000,ko02000 2.A.1.14.2 - - MFS_1 DYD3_k127_3007531_1 700598.Niako_4412 3.444e-46 172.0 COG0457@1|root,COG1729@1|root,COG0457@2|Bacteria,COG1729@2|Bacteria,4NE4W@976|Bacteroidetes,1IPPH@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Tetratricopeptide - - - - - - - - - - - - TPR_16,TPR_2,TPR_21,TPR_6,TPR_8 DYD3_k127_3007531_2 700598.Niako_4413 5.79e-35 138.0 COG2259@1|root,COG2259@2|Bacteria 2|Bacteria S methylamine metabolic process - - - ko:K15977 - - - - ko00000 - - - DoxX DYD3_k127_3007531_4 1123277.KB893243_gene174 1.457e-25 111.0 COG2259@1|root,COG2259@2|Bacteria,4NSBJ@976|Bacteroidetes 976|Bacteroidetes S DoxX family - - - ko:K15977 - - - - ko00000 - - - DoxX DYD3_k127_3007531_0 700598.Niako_4414 1.452e-60 211.0 COG0824@1|root,COG0824@2|Bacteria,4NQGW@976|Bacteroidetes,1IYEG@117747|Sphingobacteriia 976|Bacteroidetes S Thioesterase-like superfamily ybgC - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 DYD3_k127_3007531_3 485918.Cpin_4102 1.134e-31 130.0 COG1733@1|root,COG1733@2|Bacteria,4NQHM@976|Bacteroidetes,1IY3E@117747|Sphingobacteriia 976|Bacteroidetes K HxlR-like helix-turn-helix - - - - - - - - - - - - HxlR DYD3_k127_3011946_0 743722.Sph21_0281 1.503e-211 670.0 COG2217@1|root,COG2217@2|Bacteria,4NERS@976|Bacteroidetes,1IQ0B@117747|Sphingobacteriia 976|Bacteroidetes P Heavy metal translocating P-type atpase - - 3.6.3.4,3.6.3.54 ko:K01533,ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - E1-E2_ATPase,HMA,Hydrolase DYD3_k127_3020647_1 929562.Emtol_2267 6.333e-161 509.0 COG4948@1|root,COG4948@2|Bacteria,4NFHR@976|Bacteroidetes,47KJ8@768503|Cytophagia 976|Bacteroidetes M PFAM Mandelate racemase muconate lactonizing - - 4.2.1.40 ko:K01706 ko00053,ko01100,map00053,map01100 - R02752,R08056 RC00543 ko00000,ko00001,ko01000 - - - MR_MLE_C,MR_MLE_N DYD3_k127_3020647_0 761193.Runsl_1198 5.245e-256 796.0 COG2721@1|root,COG2721@2|Bacteria,4NFVQ@976|Bacteroidetes,47K7S@768503|Cytophagia 976|Bacteroidetes G PFAM D-galactarate dehydratase Altronate hydrolase uxaA - 4.2.1.42,4.2.1.7 ko:K01685,ko:K01708 ko00040,ko00053,ko01100,map00040,map00053,map01100 M00631 R01540,R05608 RC00543 ko00000,ko00001,ko00002,ko01000 - - - GD_AH_C,SAF DYD3_k127_3020647_2 761193.Runsl_1197 1.637e-158 504.0 COG2610@1|root,COG2610@2|Bacteria,4NJ5B@976|Bacteroidetes,47K2S@768503|Cytophagia 976|Bacteroidetes EG PFAM Gluconate transporter - - - ko:K03299 - - - - ko00000,ko02000 2.A.8 - - GntP_permease DYD3_k127_3023906_2 700598.Niako_6357 1.193e-137 441.0 COG1305@1|root,COG1305@2|Bacteria,4NF4N@976|Bacteroidetes,1IPWA@117747|Sphingobacteriia 976|Bacteroidetes E COGs COG1305 Transglutaminase-like protein - - - - - - - - - - - - Bact_transglu_N,Transglut_core DYD3_k127_3023906_1 700598.Niako_6358 1.693e-155 493.0 COG3000@1|root,COG3000@2|Bacteria,4PID1@976|Bacteroidetes,1IY48@117747|Sphingobacteriia 976|Bacteroidetes I PFAM Fatty acid hydroxylase superfamily - - - - - - - - - - - - FA_hydroxylase DYD3_k127_3023906_4 743722.Sph21_1204 9.181e-06 51.0 2E3A8@1|root,32Y9R@2|Bacteria,4NX1X@976|Bacteroidetes,1IU29@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3023906_3 1122605.KB893626_gene2382 5.433e-28 117.0 2APBA@1|root,31EDH@2|Bacteria,4NPIT@976|Bacteroidetes,1ITA2@117747|Sphingobacteriia 976|Bacteroidetes S Putative prokaryotic signal transducing protein - - - - - - - - - - - - DUF2007 DYD3_k127_3023906_0 700598.Niako_6359 5.812e-213 664.0 COG0592@1|root,COG0592@2|Bacteria,4NESB@976|Bacteroidetes,1IP8C@117747|Sphingobacteriia 976|Bacteroidetes L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria dnaN - 2.7.7.7 ko:K02338 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3 DYD3_k127_3051270_0 700598.Niako_0571 8.437e-269 836.0 COG1387@1|root,COG1796@1|root,COG1387@2|Bacteria,COG1796@2|Bacteria,4NDX5@976|Bacteroidetes,1IPE5@117747|Sphingobacteriia 976|Bacteroidetes L DNA polymerase dpx - - ko:K02347 - - - - ko00000,ko03400 - - - HHH_5,HHH_8,PHP DYD3_k127_3051270_1 700598.Niako_0570 3.628e-120 388.0 COG5000@1|root,COG5000@2|Bacteria,4NE49@976|Bacteroidetes,1INZH@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase zraS_1 - - - - - - - - - - - HATPase_c,HisKA DYD3_k127_3059270_1 1341181.FLJC2902T_15800 1.675e-69 240.0 COG0730@1|root,COG0730@2|Bacteria,4NKE8@976|Bacteroidetes,1II62@117743|Flavobacteriia,2NVNM@237|Flavobacterium 976|Bacteroidetes S Sulfite exporter TauE/SafE - - - ko:K07090 - - - - ko00000 - - - TauE DYD3_k127_3059270_2 1123248.KB893316_gene4612 3.684e-67 235.0 COG1073@1|root,COG1073@2|Bacteria,4NMFG@976|Bacteroidetes,1IV84@117747|Sphingobacteriia 976|Bacteroidetes S Dienelactone hydrolase family - - - - - - - - - - - - DLH DYD3_k127_3059270_0 1123248.KB893359_gene2203 9.871e-71 245.0 COG1926@1|root,COG1926@2|Bacteria,4NNIW@976|Bacteroidetes,1IW0G@117747|Sphingobacteriia 976|Bacteroidetes S Phosphoribosyl transferase domain - - - ko:K07100 - - - - ko00000 - - - Pribosyltran DYD3_k127_3059270_3 700598.Niako_0722 1.736e-61 219.0 COG0584@1|root,COG0584@2|Bacteria,4NGI1@976|Bacteroidetes 976|Bacteroidetes C glycerophosphoryl diester phosphodiesterase - - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - FlgD_ig,GDPD,Phytase-like DYD3_k127_3059270_5 284031.JNXD01000001_gene5023 0.0009181 45.0 COG5343@1|root,COG5343@2|Bacteria,2I8NI@201174|Actinobacteria 201174|Actinobacteria K An anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigK. ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut extracytoplasmically (site-1 protease, S1P), then within the membrane itself (site-2 protease, S2P, Rip1), while cytoplasmic proteases finish degrading the regulatory protein, liberating the sigma factor - - - - - - - - - - - - RskA,zf-HC2 DYD3_k127_3061019_1 1122605.KB893648_gene3650 2.976e-63 224.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_3061019_0 471854.Dfer_0149 2.302e-107 374.0 COG2972@1|root,COG3292@1|root,COG3605@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,COG3605@2|Bacteria,4NHMQ@976|Bacteroidetes,47P3A@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_3061554_5 1382304.JNIL01000001_gene486 1.284e-51 185.0 COG3547@1|root,COG3547@2|Bacteria,1TQP6@1239|Firmicutes,4HDSE@91061|Bacilli,278SD@186823|Alicyclobacillaceae 91061|Bacilli L PFAM transposase IS116 IS110 IS902 family protein - - - - - - - - - - - - DEDD_Tnp_IS110,Transposase_20 DYD3_k127_3061554_1 700598.Niako_0407 9.702e-176 570.0 COG2120@1|root,COG2120@2|Bacteria,4NE9K@976|Bacteroidetes,1IPTV@117747|Sphingobacteriia 976|Bacteroidetes G LmbE family - - - - - - - - - - - - PIG-L DYD3_k127_3061554_0 700598.Niako_0409 5.433e-247 775.0 COG0591@1|root,COG0591@2|Bacteria,4NEN8@976|Bacteroidetes,1INRR@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family yidK - - - - - - - - - - - SSF DYD3_k127_3061554_3 1267211.KI669560_gene1242 1.211e-86 292.0 COG1073@1|root,COG1073@2|Bacteria,4PN7H@976|Bacteroidetes,1J0MK@117747|Sphingobacteriia 976|Bacteroidetes S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_6 DYD3_k127_3061554_4 485918.Cpin_0221 1.565e-80 273.0 COG0500@1|root,COG2226@2|Bacteria,4NNUK@976|Bacteroidetes,1IUJG@117747|Sphingobacteriia 976|Bacteroidetes Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11,Methyltransf_23,Methyltransf_25 DYD3_k127_3061554_2 700598.Niako_0411 3.316e-124 404.0 COG0457@1|root,COG0457@2|Bacteria,4P246@976|Bacteroidetes,1IPA5@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2911) - - - - - - - - - - - - DUF2911 DYD3_k127_3061554_6 700598.Niako_0412 1.59e-42 166.0 COG0810@1|root,COG0810@2|Bacteria,4P6I7@976|Bacteroidetes,1IZ8I@117747|Sphingobacteriia 976|Bacteroidetes M Gram-negative bacterial TonB protein C-terminal - - - - - - - - - - - - CarbopepD_reg_2,TonB_C DYD3_k127_3065761_0 929713.NIASO_04135 4.307e-216 677.0 COG0477@1|root,COG2814@2|Bacteria,4NE09@976|Bacteroidetes,1IW6M@117747|Sphingobacteriia 976|Bacteroidetes EGP Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - - - - - - - - - - Sugar_tr DYD3_k127_3065761_1 143224.JQMD01000002_gene126 2.629e-146 470.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1HX4C@117743|Flavobacteriia 976|Bacteroidetes S PFAM ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_3068197_2 1123248.KB893333_gene2814 1.033e-105 351.0 COG0477@1|root,COG2814@2|Bacteria,4NEY4@976|Bacteroidetes,1IV9Q@117747|Sphingobacteriia 976|Bacteroidetes EGP Sugar (and other) transporter - - - - - - - - - - - - MFS_1 DYD3_k127_3068197_4 1123248.KB893333_gene2813 2.305e-77 262.0 COG2128@1|root,COG2128@2|Bacteria,4NNYF@976|Bacteroidetes,1IT75@117747|Sphingobacteriia 976|Bacteroidetes S Carboxymuconolactone decarboxylase family - - - - - - - - - - - - CMD DYD3_k127_3068197_3 1123248.KB893333_gene2812 1.074e-78 266.0 COG2128@1|root,COG2128@2|Bacteria,4NNHK@976|Bacteroidetes,1IWPA@117747|Sphingobacteriia 976|Bacteroidetes S Carboxymuconolactone decarboxylase family - - - - - - - - - - - - CMD DYD3_k127_3068197_0 700598.Niako_1910 1.567e-169 539.0 COG0620@1|root,COG0620@2|Bacteria,4NJAH@976|Bacteroidetes,1IZXY@117747|Sphingobacteriia 976|Bacteroidetes E COGs COG0620 Methionine synthase II (cobalamin-independent) - - 2.1.1.14 ko:K00549 ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230 M00017 R04405,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - Meth_synt_2 DYD3_k127_3068197_1 1123248.KB893333_gene2808 3.899e-148 478.0 COG2128@1|root,COG2128@2|Bacteria,4NHD5@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function (DUF3179) - - - - - - - - - - - - DUF3179 DYD3_k127_3068197_5 925409.KI911562_gene1113 5.149e-10 61.0 COG1801@1|root,COG1801@2|Bacteria,4NHAD@976|Bacteroidetes,1IP8N@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD3_k127_3070250_0 1121104.AQXH01000001_gene1613 0.0 1155.0 COG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,4NH06@976|Bacteroidetes,1J105@117747|Sphingobacteriia 976|Bacteroidetes HP Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_3070250_1 649349.Lbys_2068 1.734e-31 128.0 28PJE@1|root,2ZC90@2|Bacteria,4NJ5D@976|Bacteroidetes,47V3I@768503|Cytophagia 976|Bacteroidetes S Pfam:SusD - - - - - - - - - - - - SusD-like_3,SusD_RagB DYD3_k127_3070393_1 700598.Niako_5318 1.148e-148 475.0 COG0155@1|root,COG1773@1|root,COG0155@2|Bacteria,COG1773@2|Bacteria,4NHF0@976|Bacteroidetes,1IQWP@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Rubredoxin-type Fe(Cys)4 protein rubR - - - - - - - - - - - Rubredoxin DYD3_k127_3070393_2 700598.Niako_5319 3.429e-45 165.0 COG0243@1|root,COG1251@1|root,COG0243@2|Bacteria,COG1251@2|Bacteria,4NG4N@976|Bacteroidetes,1IP8G@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - 1.7.7.2 ko:K00367 ko00910,ko01120,map00910,map01120 M00531 R00791 RC02812 ko00000,ko00001,ko00002,ko01000 - - - Fer2_BFD,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,Pyr_redox_2 DYD3_k127_3070393_0 700598.Niako_5319 1.527e-233 725.0 COG0243@1|root,COG1251@1|root,COG0243@2|Bacteria,COG1251@2|Bacteria,4NG4N@976|Bacteroidetes,1IP8G@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - 1.7.7.2 ko:K00367 ko00910,ko01120,map00910,map01120 M00531 R00791 RC02812 ko00000,ko00001,ko00002,ko01000 - - - Fer2_BFD,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,Pyr_redox_2 DYD3_k127_3082206_0 700598.Niako_1556 4.346e-144 459.0 COG0247@1|root,COG0247@2|Bacteria,4NDZS@976|Bacteroidetes,1IP0Z@117747|Sphingobacteriia 976|Bacteroidetes C Fe-S oxidoreductase - - - - - - - - - - - - CCG DYD3_k127_3082206_2 761193.Runsl_2942 8.692e-49 183.0 COG0664@1|root,COG0664@2|Bacteria,4NKW5@976|Bacteroidetes,47N83@768503|Cytophagia 976|Bacteroidetes K Crp-like helix-turn-helix domain - - - ko:K10914 ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111 - - - ko00000,ko00001,ko03000 - - - HTH_Crp_2,cNMP_binding DYD3_k127_3082206_1 761193.Runsl_2945 3.262e-56 199.0 COG3350@1|root,COG3350@2|Bacteria,4NRFU@976|Bacteroidetes,47QIJ@768503|Cytophagia 976|Bacteroidetes S monooxygenase activity - - - - - - - - - - - - YHS DYD3_k127_3082206_3 700598.Niako_3839 1.187e-37 145.0 2C87P@1|root,32H7J@2|Bacteria,4NS7S@976|Bacteroidetes,1IYAE@117747|Sphingobacteriia 976|Bacteroidetes S DoxX-like family - - - - - - - - - - - - DoxX_2 DYD3_k127_3082206_4 1434325.AZQN01000001_gene574 6.12e-10 63.0 2976S@1|root,2ZUEM@2|Bacteria,4NPEH@976|Bacteroidetes,47Q3C@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3085644_5 485918.Cpin_1587 3.44e-20 93.0 COG1595@1|root,COG1595@2|Bacteria,4NR0P@976|Bacteroidetes 976|Bacteroidetes K RNA polymerase sigma-70 factor - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_3085644_0 1089547.KB913013_gene779 2.031e-217 684.0 COG3538@1|root,COG3538@2|Bacteria,4NGY6@976|Bacteroidetes,47JIR@768503|Cytophagia 976|Bacteroidetes S Pfam:DUF1237 - - - ko:K09704 - - - - ko00000 - - - Glyco_hydro_125 DYD3_k127_3085644_4 485918.Cpin_5017 4.348e-92 306.0 COG0400@1|root,COG0400@2|Bacteria,4NF4I@976|Bacteroidetes,1IS39@117747|Sphingobacteriia 976|Bacteroidetes S PFAM phospholipase Carboxylesterase - - - ko:K06999 - - - - ko00000 - - - Abhydrolase_2 DYD3_k127_3085644_2 700598.Niako_0784 7.539e-137 441.0 COG0346@1|root,COG0346@2|Bacteria,4NGE0@976|Bacteroidetes,1IR0X@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - ko:K15975 - - - - ko00000 - - - Glyoxalase DYD3_k127_3085644_1 1121904.ARBP01000055_gene494 3.849e-163 527.0 COG5520@1|root,COG5520@2|Bacteria 2|Bacteria M Belongs to the glycosyl hydrolase 30 family - - 3.2.1.136,3.2.1.55,3.2.1.8 ko:K01181,ko:K15921,ko:K15924 ko00520,map00520 - R01762 - ko00000,ko00001,ko01000 - CBM6,GH43,GH5 - Beta_helix,Binary_toxB_2,Binary_toxB_3,CBM_6,CW_binding_1,Dockerin_1,Glyco_hydro_10,Glyco_hydro_30,Glyco_hydro_30C,Glyco_hydro_43,Lipase_GDSL_2,RicinB_lectin_2,Ricin_B_lectin DYD3_k127_3085644_3 926549.KI421517_gene2437 8.085e-118 388.0 COG2610@1|root,COG2610@2|Bacteria,4NFBD@976|Bacteroidetes,47KJN@768503|Cytophagia 976|Bacteroidetes EG TIGRFAM gluconate transporter - - - ko:K06155,ko:K06157 - - - - ko00000,ko02000 2.A.8.1.2,2.A.8.1.4 - - GntP_permease DYD3_k127_3085838_5 700598.Niako_7061 1.668e-69 237.0 COG0838@1|root,COG0838@2|Bacteria,4NQJB@976|Bacteroidetes,1ISVI@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoA - 1.6.5.3 ko:K00330 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q4 DYD3_k127_3085838_2 700598.Niako_7063 1.265e-119 385.0 COG0377@1|root,COG0377@2|Bacteria,4NFKT@976|Bacteroidetes,1INQ8@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoB - 1.6.5.3 ko:K00331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q6 DYD3_k127_3085838_3 700598.Niako_7064 1.868e-92 305.0 COG0852@1|root,COG0852@2|Bacteria,4NPZH@976|Bacteroidetes,1ISEW@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoC - 1.6.5.3 ko:K00332 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_30kDa DYD3_k127_3085838_0 700598.Niako_7065 1.532e-256 792.0 COG0649@1|root,COG0649@2|Bacteria,4NF02@976|Bacteroidetes,1IR4T@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoD - 1.6.5.3 ko:K00333 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_49kDa DYD3_k127_3085838_4 700598.Niako_7066 2.164e-85 285.0 COG1905@1|root,COG1905@2|Bacteria,4NHIQ@976|Bacteroidetes,1IS1Q@117747|Sphingobacteriia 976|Bacteroidetes C NADH-quinone oxidoreductase, E subunit nuoE - 1.6.5.3 ko:K00334 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - 2Fe-2S_thioredx DYD3_k127_3085838_1 700598.Niako_7067 2.469e-155 491.0 COG1894@1|root,COG1894@2|Bacteria,4NFB5@976|Bacteroidetes,1INS2@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain nuoF - 1.12.1.3,1.6.5.3 ko:K00335,ko:K18331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - 2Fe-2S_thioredx,Complex1_51K,Fer4,NADH_4Fe-4S,SLBB DYD3_k127_3091805_3 700598.Niako_6704 1.68e-103 338.0 COG0179@1|root,COG0179@2|Bacteria,4NFMZ@976|Bacteroidetes,1IPCE@117747|Sphingobacteriia 976|Bacteroidetes Q PFAM Fumarylacetoacetate (FAA) hydrolase family - - - - - - - - - - - - FAA_hydrolase DYD3_k127_3091805_4 700598.Niako_6703 4.154e-51 182.0 COG3254@1|root,COG3254@2|Bacteria,4NQAA@976|Bacteroidetes,1ISWR@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Rhamnose mutarotase - - 5.1.3.32 ko:K03534 - - R10819 RC00563 ko00000,ko01000 - - - rhaM DYD3_k127_3091805_1 700598.Niako_6702 3.142e-147 469.0 COG3618@1|root,COG3618@2|Bacteria,4NFGB@976|Bacteroidetes,1IVQ0@117747|Sphingobacteriia 976|Bacteroidetes S Amidohydrolase - - - ko:K07046 ko00051,ko01120,map00051,map01120 - R10689 RC00537 ko00000,ko00001,ko01000 - - - Amidohydro_2 DYD3_k127_3091805_2 700598.Niako_6701 1.064e-128 415.0 COG1028@1|root,COG1028@2|Bacteria,4NH6R@976|Bacteroidetes,1IP1M@117747|Sphingobacteriia 976|Bacteroidetes IQ Short-chain dehydrogenase reductase sdr - - 1.1.1.100 ko:K00059,ko:K18333 ko00051,ko00061,ko00333,ko00780,ko01040,ko01100,ko01120,ko01130,ko01212,map00051,map00061,map00333,map00780,map01040,map01100,map01120,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R08926,R10116,R10120,R11671 RC00029,RC00066,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD3_k127_3091805_0 925409.KI911562_gene39 5.541e-183 581.0 COG0738@1|root,COG0738@2|Bacteria,4NEYR@976|Bacteroidetes,1INV5@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Major Facilitator Superfamily - - - ko:K02429 - - - - ko00000,ko02000 2.A.1.7 - - MFS_1 DYD3_k127_3091805_5 700598.Niako_6699 5.198e-10 60.0 COG1028@1|root,COG1028@2|Bacteria,4NH6Y@976|Bacteroidetes,1IQBS@117747|Sphingobacteriia 976|Bacteroidetes IQ short-chain dehydrogenase - - - - - - - - - - - - adh_short_C2 DYD3_k127_3092835_2 866536.Belba_3574 4.108e-14 77.0 COG4731@1|root,COG4731@2|Bacteria,4NQCK@976|Bacteroidetes,47R93@768503|Cytophagia 976|Bacteroidetes S Uncharacterized protein conserved in bacteria (DUF2147) - - - - - - - - - - - - DUF2147 DYD3_k127_3092835_0 471854.Dfer_0585 2.219e-110 365.0 2DB9K@1|root,2Z7XA@2|Bacteria,4NEDV@976|Bacteroidetes,47M5E@768503|Cytophagia 976|Bacteroidetes S phytanoyl-CoA dioxygenase - - - - - - - - - - - - PhyH DYD3_k127_3092835_3 761193.Runsl_2190 4.323e-08 62.0 2E3EE@1|root,32W4H@2|Bacteria,4NU8U@976|Bacteroidetes,47R8F@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3092835_1 1122605.KB893647_gene299 3.661e-79 273.0 COG3279@1|root,COG3279@2|Bacteria,4NMX6@976|Bacteroidetes,1IXEB@117747|Sphingobacteriia 976|Bacteroidetes T LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_3092835_5 694427.Palpr_2448 0.0007567 47.0 COG0457@1|root,COG2972@1|root,COG0457@2|Bacteria,COG2972@2|Bacteria,4NMSW@976|Bacteroidetes,2G06Q@200643|Bacteroidia,2304H@171551|Porphyromonadaceae 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase,TPR_2,TPR_8 DYD3_k127_3092835_4 1185876.BN8_03364 1.306e-05 51.0 COG0457@1|root,COG0642@1|root,COG0457@2|Bacteria,COG0642@2|Bacteria,4NI29@976|Bacteroidetes,47KZN@768503|Cytophagia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,TPR_12,TPR_7,TPR_8 DYD3_k127_3100099_1 929556.Solca_3838 2.713e-44 165.0 COG2114@1|root,COG2207@1|root,COG2114@2|Bacteria,COG2207@2|Bacteria 2|Bacteria K Transcriptional regulator - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - Cupin_6,GAF,Guanylate_cyc,HDOD,HTH_18,PAS_4,PAS_9 DYD3_k127_3100099_0 1121377.KB906436_gene921 7.706e-130 440.0 COG2909@1|root,COG2909@2|Bacteria 2|Bacteria K trisaccharide binding - - - - - - - - - - - - AAA_16,GerE DYD3_k127_3123844_0 700598.Niako_5301 3.855e-278 865.0 COG1629@1|root,COG4796@1|root,COG1629@2|Bacteria,COG4796@2|Bacteria,4NDXS@976|Bacteroidetes,1INYA@117747|Sphingobacteriia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_3123844_1 700598.Niako_5300 1.75e-165 529.0 COG0436@1|root,COG0436@2|Bacteria,4NEN3@976|Bacteroidetes,1IQ71@117747|Sphingobacteriia 976|Bacteroidetes E PFAM RagB SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_3129800_0 1122605.KB893648_gene3649 4.12e-175 565.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IW1C@117747|Sphingobacteriia 976|Bacteroidetes T Y_Y_Y domain - - - - - - - - - - - - His_kinase,Reg_prop,Y_Y_Y DYD3_k127_3129800_1 1279009.ADICEAN_01401 1.046e-57 207.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes,47PTI@768503|Cytophagia 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_3129976_1 700598.Niako_1384 3.093e-148 474.0 COG3865@1|root,COG3865@2|Bacteria,4P1F9@976|Bacteroidetes,1IVEU@117747|Sphingobacteriia 976|Bacteroidetes S 3-demethylubiquinone-9 3-methyltransferase - - - - - - - - - - - - 3-dmu-9_3-mt DYD3_k127_3129976_0 1121285.AUFK01000001_gene1961 3.117e-151 487.0 COG1680@1|root,COG1680@2|Bacteria,4NGXR@976|Bacteroidetes,1HXN3@117743|Flavobacteriia,3ZRAT@59732|Chryseobacterium 976|Bacteroidetes V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD3_k127_3129976_4 929556.Solca_3822 2.517e-59 209.0 COG1522@1|root,COG1522@2|Bacteria,4NR3Z@976|Bacteroidetes,1ITIE@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix ASNC type - - - - - - - - - - - - AsnC_trans_reg,HTH_24,HTH_AsnC-type DYD3_k127_3129976_2 1506583.JQJY01000008_gene4073 3.488e-130 428.0 COG1680@1|root,COG1680@2|Bacteria,4NI1Z@976|Bacteroidetes,1HYQF@117743|Flavobacteriia,2NT82@237|Flavobacterium 976|Bacteroidetes V beta-lactamase - - - - - - - - - - - - Beta-lactamase,DUF3471 DYD3_k127_3129976_3 929556.Solca_2160 6.158e-67 232.0 2C0BR@1|root,32Z3H@2|Bacteria,4NVDW@976|Bacteroidetes,1IU2Z@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF4255) - - - - - - - - - - - - DUF4255 DYD3_k127_3131536_0 700598.Niako_3669 5.375e-158 507.0 COG1502@1|root,COG1502@2|Bacteria,4P0CZ@976|Bacteroidetes,1J0D9@117747|Sphingobacteriia 976|Bacteroidetes I Phospholipase D. Active site motifs. - - - ko:K06131 ko00564,ko01100,map00564,map01100 - R07390 RC00017 ko00000,ko00001,ko01000 - - - PLDc_2 DYD3_k127_3131536_1 700598.Niako_3668 4.995e-85 296.0 COG3712@1|root,COG3712@2|Bacteria,4NE6N@976|Bacteroidetes 976|Bacteroidetes PT COG3712 Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_3133272_0 1120965.AUBV01000001_gene3365 3.022e-187 590.0 COG0491@1|root,COG0607@1|root,COG0491@2|Bacteria,COG0607@2|Bacteria,4NE2Y@976|Bacteroidetes,47KD4@768503|Cytophagia 976|Bacteroidetes P COGs COG0491 Zn-dependent hydrolase including glyoxylase - - - - - - - - - - - - Lactamase_B,Rhodanese DYD3_k127_3133272_4 316275.VSAL_II1056 7.943e-18 86.0 COG0607@1|root,COG0607@2|Bacteria,1RHVM@1224|Proteobacteria,1SD9C@1236|Gammaproteobacteria,1XXY0@135623|Vibrionales 135623|Vibrionales M COG0607 Rhodanese-related sulfurtransferase pspE - - ko:K03972 - - - - ko00000 - - - Rhodanese DYD3_k127_3133272_1 1267211.KI669560_gene1590 3.627e-165 531.0 COG3203@1|root,COG3203@2|Bacteria,4PMSP@976|Bacteroidetes 976|Bacteroidetes M outer membrane porin, OprD family - - - - - - - - - - - - OprD DYD3_k127_3133272_3 1123248.KB893324_gene1689 3.772e-92 306.0 COG2391@1|root,COG2391@2|Bacteria,4NM6E@976|Bacteroidetes,1IS2D@117747|Sphingobacteriia 976|Bacteroidetes S PFAM YeeE YedE family (DUF395) - - - ko:K07112 - - - - ko00000 - - - Sulf_transp DYD3_k127_3133272_2 1123248.KB893326_gene1438 4.65e-93 307.0 COG2391@1|root,COG2391@2|Bacteria,4NQ9C@976|Bacteroidetes,1IS9I@117747|Sphingobacteriia 976|Bacteroidetes S PFAM YeeE YedE family (DUF395) - - - ko:K07112 - - - - ko00000 - - - Sulf_transp DYD3_k127_3140351_1 485918.Cpin_4591 4.97e-112 365.0 COG1680@1|root,COG1680@2|Bacteria,4NG6Z@976|Bacteroidetes,1IUBB@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase,CBM9_1 DYD3_k127_3140351_2 1255043.TVNIR_3515 1.543e-55 200.0 COG0262@1|root,COG0262@2|Bacteria,1R5UU@1224|Proteobacteria,1SEMI@1236|Gammaproteobacteria 1236|Gammaproteobacteria H RibD C-terminal domain - - - - - - - - - - - - RibD_C DYD3_k127_3140351_3 700598.Niako_6325 2.667e-52 189.0 2APQJ@1|root,31EUD@2|Bacteria,4NNU5@976|Bacteroidetes,1ITJ4@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3140351_0 1434325.AZQN01000002_gene956 4.222e-132 427.0 COG2010@1|root,COG2010@2|Bacteria,4PMA9@976|Bacteroidetes,47Y99@768503|Cytophagia 976|Bacteroidetes C Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_3140351_4 313594.PI23P_12582 8.631e-09 57.0 2APQJ@1|root,31EUD@2|Bacteria,4NNU5@976|Bacteroidetes,1I2CM@117743|Flavobacteriia,3VWHH@52959|Polaribacter 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3140351_5 1347342.BN863_10660 3.852e-05 47.0 2APQJ@1|root,31EUD@2|Bacteria,4NNU5@976|Bacteroidetes,1I2CM@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3143649_3 1144275.COCOR_05185 6.229e-26 113.0 COG0596@1|root,COG0596@2|Bacteria,1R4N4@1224|Proteobacteria,434SV@68525|delta/epsilon subdivisions,2WZ3Y@28221|Deltaproteobacteria,2Z19T@29|Myxococcales 28221|Deltaproteobacteria S Hydrolase - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 DYD3_k127_3143649_0 700598.Niako_1627 9.459e-173 552.0 28HQ3@1|root,2Z7XW@2|Bacteria,4NF9H@976|Bacteroidetes,1INN1@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2851) - - - - - - - - - - - - DUF2851 DYD3_k127_3143649_1 700598.Niako_1626 4.311e-84 287.0 COG0424@1|root,COG0424@2|Bacteria,4NNXV@976|Bacteroidetes,1ISD6@117747|Sphingobacteriia 976|Bacteroidetes D Maf-like protein maf - - ko:K06287 - - - - ko00000 - - - Maf DYD3_k127_3143649_2 700598.Niako_1625 5.923e-53 188.0 COG0382@1|root,COG0382@2|Bacteria,4NFRM@976|Bacteroidetes,1IYC2@117747|Sphingobacteriia 976|Bacteroidetes H UbiA prenyltransferase family ubiA - 2.5.1.39 ko:K03179 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R05000,R05615 RC00209,RC02895 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA DYD3_k127_3144204_5 700598.Niako_1205 1.091e-23 100.0 COG1136@1|root,COG1136@2|Bacteria,4NFDW@976|Bacteroidetes,1INQS@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_3144204_2 700598.Niako_1207 8.068e-206 646.0 COG0845@1|root,COG0845@2|Bacteria,4NDUH@976|Bacteroidetes,1IPZS@117747|Sphingobacteriia 976|Bacteroidetes M Efflux transporter, RND family, MFP subunit - - - ko:K02005 - - - - ko00000 - - - Biotin_lipoyl_2,HlyD_3 DYD3_k127_3144204_1 1279009.ADICEAN_02116 9.664e-212 665.0 COG2204@1|root,COG2204@2|Bacteria,4NE89@976|Bacteroidetes,47JF9@768503|Cytophagia 976|Bacteroidetes T two component, sigma54 specific, transcriptional regulator, Fis family - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD3_k127_3144204_0 700598.Niako_1209 6.051e-238 741.0 COG5000@1|root,COG5000@2|Bacteria,4NEWF@976|Bacteroidetes,1IPUP@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,PAS_8 DYD3_k127_3144204_4 700598.Niako_1210 8.66e-82 277.0 28NRS@1|root,2ZBQZ@2|Bacteria,4NMM5@976|Bacteroidetes,1ITP3@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3144204_3 700598.Niako_2556 1.201e-99 336.0 COG4773@1|root,COG4773@2|Bacteria,4NF92@976|Bacteroidetes,1IQFG@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_315029_0 700598.Niako_5805 0.0 1460.0 COG0612@1|root,COG0612@2|Bacteria,4NEDZ@976|Bacteroidetes,1IPY5@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Peptidase M16 inactive domain - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C DYD3_k127_3155355_2 755732.Fluta_3737 8.036e-16 89.0 COG4625@1|root,COG4625@2|Bacteria,4P79B@976|Bacteroidetes 976|Bacteroidetes S pathogenesis - - - - - - - - - - - - - DYD3_k127_3155355_1 1123248.KB893348_gene325 3.03e-43 164.0 COG3279@1|root,COG3279@2|Bacteria,4NGBF@976|Bacteroidetes,1IX5E@117747|Sphingobacteriia 976|Bacteroidetes K Signal transduction response regulator, receiver - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_3155355_0 391596.PBAL39_13757 7.418e-92 305.0 COG0726@1|root,COG0726@2|Bacteria,4NGMX@976|Bacteroidetes,1IPFM@117747|Sphingobacteriia 976|Bacteroidetes G xylanase chitin deacetylase - - - - - - - - - - - - Polysacc_deac_1 DYD3_k127_3162768_2 929703.KE386491_gene530 1.403e-117 383.0 COG0596@1|root,COG0596@2|Bacteria,4NFBJ@976|Bacteroidetes,47SEQ@768503|Cytophagia 976|Bacteroidetes S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_3162768_5 929703.KE386491_gene531 2.395e-51 188.0 COG1309@1|root,COG1309@2|Bacteria,4NM7T@976|Bacteroidetes,47RKT@768503|Cytophagia 976|Bacteroidetes K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N DYD3_k127_3162768_0 700598.Niako_5930 8.236e-276 871.0 COG2831@1|root,COG2831@2|Bacteria,4PNP1@976|Bacteroidetes 976|Bacteroidetes U hemolysin activation secretion protein - - - - - - - - - - - - ShlB DYD3_k127_3162768_3 1185876.BN8_05812 5.318e-74 261.0 2BSEF@1|root,32MGE@2|Bacteria,4NK41@976|Bacteroidetes,47USI@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3162768_4 1185876.BN8_05812 2.128e-66 239.0 2BSEF@1|root,32MGE@2|Bacteria,4NK41@976|Bacteroidetes,47USI@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3162768_1 1185876.BN8_05813 6.768e-199 630.0 COG1696@1|root,COG1696@2|Bacteria,4NFK5@976|Bacteroidetes,47ME9@768503|Cytophagia 976|Bacteroidetes M membrane protein involved in D-alanine export - - - - - - - - - - - - MBOAT DYD3_k127_3162768_6 1336803.PHEL49_2566 2.478e-13 79.0 COG3209@1|root,COG3210@1|root,COG3291@1|root,COG3209@2|Bacteria,COG3210@2|Bacteria,COG3291@2|Bacteria,4NDZC@976|Bacteroidetes,1IJ8A@117743|Flavobacteriia 976|Bacteroidetes G Pkd domain containing protein - - - - - - - - - - - - CHU_C,Gal_Lectin,Gly_rich,HYR,Laminin_G_3,PKD,SprB,TSP_3 DYD3_k127_3162783_4 700598.Niako_5023 5.188e-85 285.0 COG1091@1|root,COG1091@2|Bacteria,4NE3K@976|Bacteroidetes,1IP3S@117747|Sphingobacteriia 976|Bacteroidetes M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose - - 1.1.1.133 ko:K00067 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R02777 RC00182 ko00000,ko00001,ko00002,ko01000 - - - RmlD_sub_bind DYD3_k127_3162783_5 1122605.KB893625_gene2086 6.499e-77 261.0 COG1898@1|root,COG1898@2|Bacteria,4NNKW@976|Bacteroidetes,1IRUX@117747|Sphingobacteriia 976|Bacteroidetes M Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose rfbC - 5.1.3.13 ko:K01790 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R06514 RC01531 ko00000,ko00001,ko00002,ko01000 - - - dTDP_sugar_isom DYD3_k127_3162783_2 485918.Cpin_1511 3.941e-192 604.0 COG1088@1|root,COG1088@2|Bacteria,4NE9V@976|Bacteroidetes,1IPRN@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily - - 4.2.1.46 ko:K01710 ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130 M00793 R06513 RC00402 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd DYD3_k127_3162783_3 1122605.KB893625_gene2085 2.572e-191 605.0 COG0677@1|root,COG0677@2|Bacteria,4NDTW@976|Bacteroidetes,1IPXE@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the UDP-glucose GDP-mannose dehydrogenase family - - 1.1.1.136 ko:K02474,ko:K13015 ko00520,map00520 - R00421,R06894 RC00291 ko00000,ko00001,ko01000,ko01005 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N DYD3_k127_3162783_1 700598.Niako_5026 1.103e-202 632.0 COG0451@1|root,COG0451@2|Bacteria,4NEZX@976|Bacteroidetes,1IPW2@117747|Sphingobacteriia 976|Bacteroidetes GM NAD dependent epimerase dehydratase family - - 4.2.1.46 ko:K01710 ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130 M00793 R06513 RC00402 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd DYD3_k127_3162783_0 700598.Niako_5027 7.112e-252 781.0 COG1004@1|root,COG1004@2|Bacteria,4NE00@976|Bacteroidetes,1IQ5C@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the UDP-glucose GDP-mannose dehydrogenase family tuaD - 1.1.1.22 ko:K00012 ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 M00014,M00129,M00361,M00362 R00286 RC00291 ko00000,ko00001,ko00002,ko01000 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N DYD3_k127_3162783_6 700598.Niako_5028 3.472e-59 205.0 COG0399@1|root,COG0399@2|Bacteria,4NEBI@976|Bacteroidetes,1IQH3@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the DegT DnrJ EryC1 family degT - - - - - - - - - - - DegT_DnrJ_EryC1 DYD3_k127_3171775_2 1178825.ALIH01000004_gene2863 1.361e-20 96.0 COG3485@1|root,COG3485@2|Bacteria,4NEZ1@976|Bacteroidetes,1I01Q@117743|Flavobacteriia 976|Bacteroidetes Q Dioxygenase - - 1.13.11.3 ko:K00449 ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220 - R01631,R03549 RC00388,RC00953 br01602,ko00000,ko00001,ko01000 - - - Dioxygenase_C DYD3_k127_3171775_1 700598.Niako_0643 1.236e-55 207.0 COG2972@1|root,COG2972@2|Bacteria,4NIRC@976|Bacteroidetes,1J05H@117747|Sphingobacteriia 976|Bacteroidetes T Signal transduction histidine kinase, LytS - - - - - - - - - - - - HATPase_c_5,His_kinase DYD3_k127_3171775_0 1123277.KB893195_gene5658 3.56e-76 262.0 COG3279@1|root,COG3279@2|Bacteria,4NF8U@976|Bacteroidetes,47Q2C@768503|Cytophagia 976|Bacteroidetes T LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_3173733_4 357276.EL88_23730 3.151e-09 59.0 COG1554@1|root,COG1554@2|Bacteria,4NEWW@976|Bacteroidetes,2FMF9@200643|Bacteroidia,4AMRU@815|Bacteroidaceae 976|Bacteroidetes G COG NOG04001 non supervised orthologous group - - 3.2.1.51 ko:K15923 ko00511,map00511 - - - ko00000,ko00001,ko01000 - GH95 - Glyco_hyd_65N_2 DYD3_k127_3173733_0 700598.Niako_5370 1.576e-278 870.0 COG3669@1|root,COG3669@2|Bacteria,4NE74@976|Bacteroidetes,1IREG@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase, family 29 - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos DYD3_k127_3173733_2 929713.NIASO_10040 1.408e-56 198.0 COG0640@1|root,COG0640@2|Bacteria,4NQCU@976|Bacteroidetes 976|Bacteroidetes K PFAM Bacterial regulatory protein, arsR family - - - - - - - - - - - - HTH_20,HTH_5 DYD3_k127_3173733_1 991.IW20_21555 4.844e-64 223.0 COG3832@1|root,COG3832@2|Bacteria,4NM7P@976|Bacteroidetes,1I1F7@117743|Flavobacteriia,2NVWH@237|Flavobacterium 976|Bacteroidetes S Activator of Hsp90 ATPase - - - - - - - - - - - - AHSA1 DYD3_k127_3173733_3 1237149.C900_04108 5.718e-12 66.0 COG2259@1|root,31BQE@2|Bacteria,4NQH2@976|Bacteroidetes,47QHF@768503|Cytophagia 976|Bacteroidetes S DoxX-like family - - - - - - - - - - - - DoxX_2 DYD3_k127_3184405_1 1123248.KB893326_gene1297 5.082e-265 826.0 COG5368@1|root,COG5368@2|Bacteria,4NE34@976|Bacteroidetes,1IPF9@117747|Sphingobacteriia 976|Bacteroidetes S Putative glucoamylase - - - - - - - - - - - - Glycoamylase DYD3_k127_3184405_0 468059.AUHA01000002_gene198 3.939e-287 889.0 COG3507@1|root,COG3507@2|Bacteria,4NEMG@976|Bacteroidetes,1INMJ@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 43 family - - - - - - - - - - - - F5_F8_type_C,Glyco_hydro_43 DYD3_k127_3184405_3 1123248.KB893326_gene1298 4.747e-79 269.0 COG2755@1|root,COG2755@2|Bacteria,4NMGQ@976|Bacteroidetes,1IXI7@117747|Sphingobacteriia 976|Bacteroidetes E GDSL-like Lipase/Acylhydrolase - - - - - - - - - - - - Lipase_GDSL_2 DYD3_k127_3184405_2 1150600.ADIARSV_3651 2.615e-83 280.0 COG1472@1|root,COG1472@2|Bacteria,4NE90@976|Bacteroidetes,1INUX@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 3 family bglX - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C DYD3_k127_3194899_0 925409.KI911562_gene408 0.0 1387.0 COG1703@1|root,COG1884@1|root,COG2185@1|root,COG1703@2|Bacteria,COG1884@2|Bacteria,COG2185@2|Bacteria,4NFHX@976|Bacteroidetes,1INXI@117747|Sphingobacteriia 976|Bacteroidetes EI Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly icmF - 5.4.99.13 ko:K11942 - - - - ko00000,ko01000 - - - ArgK,B12-binding,MM_CoA_mutase DYD3_k127_3195825_0 700598.Niako_7227 1.518e-144 462.0 COG1167@1|root,COG1167@2|Bacteria,4NG85@976|Bacteroidetes 976|Bacteroidetes K COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - ko:K00375 - - - - ko00000,ko03000 - - - Aminotran_1_2,GntR DYD3_k127_3195825_2 452637.Oter_3033 2.191e-45 167.0 COG3631@1|root,COG3631@2|Bacteria 2|Bacteria S light absorption - - - ko:K06893 - - - - ko00000 - - - DUF2358,SnoaL_2 DYD3_k127_3195825_1 1356852.N008_18905 1.249e-78 276.0 COG0739@1|root,COG0739@2|Bacteria,4NEBZ@976|Bacteroidetes,47JJ1@768503|Cytophagia 976|Bacteroidetes M Peptidase family M23 - - - ko:K21472 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23,SH3_3,SH3_4 DYD3_k127_3220784_0 700598.Niako_5323 1.035e-265 820.0 COG1251@1|root,COG1251@2|Bacteria,4NE44@976|Bacteroidetes,1IQHA@117747|Sphingobacteriia 976|Bacteroidetes C reductase 4Fe-4S domain - - 1.7.1.15 ko:K00362 ko00910,ko01120,map00910,map01120 M00530 R00787 RC00176 ko00000,ko00001,ko00002,ko01000 - - - Fer2_BFD,NIR_SIR,NIR_SIR_ferr,Pyr_redox_2 DYD3_k127_3220784_2 925409.KI911562_gene351 7.276e-57 199.0 COG2146@1|root,COG2146@2|Bacteria,4NQQ8@976|Bacteroidetes,1ISS2@117747|Sphingobacteriia 976|Bacteroidetes P Nitrite reductase - - 1.7.1.15 ko:K00363 ko00910,ko01120,map00910,map01120 M00530 R00787 RC00176 ko00000,ko00001,ko00002,ko01000 - - - Rieske_2 DYD3_k127_3220784_1 700598.Niako_5321 4.575e-126 415.0 COG3203@1|root,COG3203@2|Bacteria,4NDYW@976|Bacteroidetes,1IPK7@117747|Sphingobacteriia 976|Bacteroidetes M Alginate export - - - - - - - - - - - - Alginate_exp DYD3_k127_323476_2 700598.Niako_2186 2.627e-78 264.0 2EPP0@1|root,33H9M@2|Bacteria,4NXT6@976|Bacteroidetes,1IYX8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_323476_0 649349.Lbys_2090 6.875e-203 644.0 COG2234@1|root,COG2234@2|Bacteria,4NE66@976|Bacteroidetes,47M14@768503|Cytophagia 976|Bacteroidetes G Peptidase, M28 PGCP - - - - - - - - - - - Peptidase_M28 DYD3_k127_323476_1 700598.Niako_2188 9.258e-104 338.0 COG1629@1|root,COG4771@2|Bacteria,4NF4B@976|Bacteroidetes,1IW7P@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_3237292_0 700598.Niako_6570 5.785e-221 688.0 COG0626@1|root,COG0626@2|Bacteria,4NF0Q@976|Bacteroidetes,1INVN@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Cys Met metabolism metC - 2.5.1.48,4.4.1.1,4.4.1.8 ko:K01739,ko:K01758,ko:K01760 ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230 M00017,M00338 R00782,R00999,R01001,R01286,R01288,R02408,R02508,R03217,R03260,R04770,R04930,R04941,R04944,R04945,R04946,R09366 RC00020,RC00056,RC00069,RC00348,RC00382,RC00420,RC00488,RC00710,RC01209,RC01210,RC01245,RC02303,RC02848,RC02866 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Cys_Met_Meta_PP DYD3_k127_3237292_1 700598.Niako_6569 4.111e-116 379.0 COG0177@1|root,COG0177@2|Bacteria,4NE7K@976|Bacteroidetes,1IPPM@117747|Sphingobacteriia 976|Bacteroidetes L Protein of unknown function (DUF2400) - - - - - - - - - - - - DUF2400 DYD3_k127_3237292_2 926549.KI421517_gene2851 1.617e-25 107.0 COG1629@1|root,COG1629@2|Bacteria,4NF88@976|Bacteroidetes,47JEF@768503|Cytophagia 976|Bacteroidetes P Outer membrane protein beta-barrel family - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3 DYD3_k127_3248675_4 485917.Phep_1457 5.923e-21 93.0 2CUMY@1|root,32SVM@2|Bacteria,4NTF0@976|Bacteroidetes,1ITIN@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 DYD3_k127_3248675_2 1449049.JONW01000005_gene1358 8.802e-33 133.0 29DWE@1|root,300UA@2|Bacteria,1RDK5@1224|Proteobacteria,2TY0U@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Cytochrome P460 - - - - - - - - - - - - Cytochrome_P460 DYD3_k127_3248675_3 1123277.KB893180_gene2342 1.648e-27 119.0 2E32R@1|root,32Y2Y@2|Bacteria,4NVIY@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3248675_0 700598.Niako_7231 4.818e-107 351.0 COG3279@1|root,COG3279@2|Bacteria,4NP17@976|Bacteroidetes 976|Bacteroidetes KT LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_3248675_1 1120951.AUBG01000001_gene804 1.609e-60 221.0 COG2972@1|root,COG2972@2|Bacteria,4NH1Q@976|Bacteroidetes,1HXVP@117743|Flavobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_3258223_1 376686.Fjoh_4224 2.4e-70 241.0 COG3408@1|root,COG3408@2|Bacteria,4NE1I@976|Bacteroidetes,1HY0D@117743|Flavobacteriia,2NUYK@237|Flavobacterium 976|Bacteroidetes G Domain of unknown function (DUF4450) - - - - - - - - - - - - Bac_rhamnosid6H,DUF4450,DUF608 DYD3_k127_3258223_0 700598.Niako_0745 0.0 1114.0 COG3188@1|root,COG3188@2|Bacteria 2|Bacteria NU fimbrial usher porin activity fimD - - ko:K07347 ko05133,map05133 - - - ko00000,ko00001,ko02000,ko02035,ko02044 1.B.11.3 - - PapC_C,PapC_N,Usher DYD3_k127_3266468_1 700598.Niako_4354 9.022e-42 160.0 COG2020@1|root,COG2020@2|Bacteria,4NTXI@976|Bacteroidetes 976|Bacteroidetes O PFAM NnrU protein - - - - - - - - - - - - NnrU,PEMT DYD3_k127_3266468_0 700598.Niako_4355 1.304e-182 580.0 COG0488@1|root,COG0488@2|Bacteria,4NES5@976|Bacteroidetes,1IPI4@117747|Sphingobacteriia 976|Bacteroidetes S ABC transporter yfmR - - ko:K15738 - - - - ko00000,ko02000 3.A.1.120.6 - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn DYD3_k127_3267665_3 595460.RRSWK_02267 3.524e-31 123.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,2IXKD@203682|Planctomycetes 203682|Planctomycetes E glutamate synthase gltB - 1.4.1.13,1.4.1.14,1.4.7.1 ko:K00265,ko:K00284 ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230 - R00021,R00093,R00114,R00248,R10086 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase DYD3_k127_3267665_2 700598.Niako_3976 1.64e-77 265.0 COG1576@1|root,COG1576@2|Bacteria,4NMFP@976|Bacteroidetes,1ISE3@117747|Sphingobacteriia 976|Bacteroidetes J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA rlmH - 2.1.1.177 ko:K00783 - - - - ko00000,ko01000,ko03009 - - - SPOUT_MTase DYD3_k127_3267665_0 471854.Dfer_1312 2.662e-264 829.0 COG4948@1|root,COG4948@2|Bacteria,4PKP3@976|Bacteroidetes,47NVU@768503|Cytophagia 976|Bacteroidetes M Glycosyl-hydrolase 97 C-terminal, oligomerisation - - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - GH97_C,GH97_N,Glyco_hydro_97 DYD3_k127_3267665_1 1550091.JROE01000008_gene3421 4.197e-172 552.0 COG0521@1|root,COG0521@2|Bacteria,4NG3I@976|Bacteroidetes,1INSN@117747|Sphingobacteriia 976|Bacteroidetes H Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_3270996_2 929562.Emtol_1084 7.164e-58 211.0 COG0745@1|root,COG0745@2|Bacteria,4NIKR@976|Bacteroidetes,47PEG@768503|Cytophagia 976|Bacteroidetes KT transcriptional regulator, winged helix family - - - - - - - - - - - - Trans_reg_C DYD3_k127_3270996_1 700598.Niako_0076 5.069e-65 228.0 COG2318@1|root,COG2318@2|Bacteria,4NQVR@976|Bacteroidetes,1ITUT@117747|Sphingobacteriia 976|Bacteroidetes S PFAM DinB - - - - - - - - - - - - DinB DYD3_k127_3270996_5 236814.IX39_04810 0.0001884 47.0 2EMNT@1|root,2ZHKA@2|Bacteria,4P8UQ@976|Bacteroidetes,1IM67@117743|Flavobacteriia,3ZSQP@59732|Chryseobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3270996_4 1357399.HMPREF2087_00414 6.807e-07 54.0 COG0724@1|root,COG0724@2|Bacteria,1N6VR@1224|Proteobacteria,42V9Q@68525|delta/epsilon subdivisions,2YQAF@29547|Epsilonproteobacteria 29547|Epsilonproteobacteria S RNA-binding protein rbpA - - - - - - - - - - - RRM_1 DYD3_k127_3270996_0 700598.Niako_1561 1.035e-110 364.0 COG3637@1|root,COG3637@2|Bacteria,4NQ11@976|Bacteroidetes,1IYEN@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl DYD3_k127_3280136_2 700598.Niako_3032 5.66e-90 298.0 COG0533@1|root,COG0533@2|Bacteria,4NE8E@976|Bacteroidetes,1INZZ@117747|Sphingobacteriia 976|Bacteroidetes O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction tsaD GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 ko:K01409 - - R10648 RC00070,RC00416 ko00000,ko01000,ko03016 - - - Peptidase_M22 DYD3_k127_3280136_1 700598.Niako_3033 4.081e-97 323.0 COG4123@1|root,COG4123@2|Bacteria,4NG1X@976|Bacteroidetes,1ISSS@117747|Sphingobacteriia 976|Bacteroidetes J Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) smtA - 2.1.1.223 ko:K15460 - - - - ko00000,ko01000,ko03016 - - - MTS DYD3_k127_3280136_0 1122605.KB893648_gene3615 6.245e-188 593.0 COG0686@1|root,COG0686@2|Bacteria,4NF46@976|Bacteroidetes,1IWHP@117747|Sphingobacteriia 976|Bacteroidetes E Alanine dehydrogenase/PNT, N-terminal domain - - - - - - - - - - - - AlaDh_PNT_C,AlaDh_PNT_N DYD3_k127_3285987_0 1267211.KI669560_gene2658 4.654e-295 919.0 COG1629@1|root,COG4771@2|Bacteria,4NF05@976|Bacteroidetes,1IQCN@117747|Sphingobacteriia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - ko:K02014,ko:K16089 - - - - ko00000,ko02000 1.B.14,1.B.14.1,1.B.14.10 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_3302768_1 929562.Emtol_1294 1.197e-143 470.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,47JR2@768503|Cytophagia 976|Bacteroidetes P TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_3302768_2 1122605.KB893645_gene1185 1.782e-71 245.0 COG0664@1|root,COG0664@2|Bacteria,4NSMK@976|Bacteroidetes 976|Bacteroidetes T cyclic nucleotide-binding domain - - - - - - - - - - - - cNMP_binding DYD3_k127_3302768_3 1144275.COCOR_03695 3.5e-34 149.0 COG3055@1|root,COG3055@2|Bacteria,1QA41@1224|Proteobacteria,43DXI@68525|delta/epsilon subdivisions,2X90U@28221|Deltaproteobacteria,2Z1C1@29|Myxococcales 28221|Deltaproteobacteria M Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - - - - - - - - - - - DYD3_k127_3302768_0 1122605.KB893631_gene3960 8.602e-150 485.0 COG2885@1|root,COG2885@2|Bacteria,4NI3U@976|Bacteroidetes,1IQ3S@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the ompA family - - - ko:K03286 - - - - ko00000,ko02000 1.B.6 - - OMP_b-brl_2,OmpA DYD3_k127_3303221_2 700598.Niako_0549 2.093e-86 293.0 COG1975@1|root,COG1975@2|Bacteria,4NG02@976|Bacteroidetes,1IQT3@117747|Sphingobacteriia 976|Bacteroidetes O COGs COG1975 Xanthine and CO dehydrogenase maturation factor XdhC CoxF family xdhC - - ko:K07402 - - - - ko00000 - - - XdhC_C,XdhC_CoxI DYD3_k127_3303221_4 1150600.ADIARSV_3329 1.761e-53 195.0 COG2068@1|root,COG2068@2|Bacteria,4NQNF@976|Bacteroidetes,1ISZY@117747|Sphingobacteriia 976|Bacteroidetes S 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase - - 2.7.7.76 ko:K07141 ko00790,map00790 - R11582 - ko00000,ko00001,ko01000 - - - NTP_transf_3 DYD3_k127_3303221_0 700598.Niako_0551 1.457e-171 542.0 COG2896@1|root,COG2896@2|Bacteria,4NFS9@976|Bacteroidetes,1IPUJ@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate moaA - 4.1.99.22,4.6.1.17 ko:K03639,ko:K20967 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09394,R11372 RC03420,RC03425 ko00000,ko00001,ko01000 - - - Fer4_12,Fer4_14,Mob_synth_C,Radical_SAM DYD3_k127_3303221_1 1454007.JAUG01000051_gene1784 1.947e-106 349.0 COG0730@1|root,COG0730@2|Bacteria,4NIJ9@976|Bacteroidetes,1IRF7@117747|Sphingobacteriia 976|Bacteroidetes S membrane transporter protein - - - ko:K07090 - - - - ko00000 - - - TauE DYD3_k127_3303221_3 1122605.KB893643_gene502 5.403e-66 232.0 COG0659@1|root,COG0659@2|Bacteria,4NF1C@976|Bacteroidetes,1ISE6@117747|Sphingobacteriia 976|Bacteroidetes P Sulfate permease family sulP - - ko:K03321 - - - - ko00000,ko02000 2.A.53.3 - - STAS,Sulfate_transp DYD3_k127_3303402_0 700598.Niako_5699 1.935e-319 980.0 COG1154@1|root,COG1154@2|Bacteria,4NDY5@976|Bacteroidetes,1INUN@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,E1_dh,Transket_pyr,Transketolase_C DYD3_k127_3303402_1 1265503.KB905176_gene4099 7.811e-41 165.0 COG2199@1|root,COG3292@1|root,COG3292@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,1T2D4@1236|Gammaproteobacteria 1236|Gammaproteobacteria T response regulator - - - - - - - - - - - - CHASE3,GAF_2,GGDEF,HATPase_c,HisKA,Response_reg DYD3_k127_3313341_1 1123248.KB893385_gene4854 4.15e-141 451.0 COG0004@1|root,COG0004@2|Bacteria,4NDV2@976|Bacteroidetes,1IPB8@117747|Sphingobacteriia 976|Bacteroidetes P Ammonium Transporter - - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp DYD3_k127_3313341_0 700598.Niako_0109 1.057e-304 936.0 COG0493@1|root,COG0493@2|Bacteria,4NG9R@976|Bacteroidetes,1IPJB@117747|Sphingobacteriia 976|Bacteroidetes C TIGRFAM glutamate synthase, NADH NADPH, small subunit gltD - 1.4.1.13,1.4.1.14 ko:K00266 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - Fer4_20,Pyr_redox_2 DYD3_k127_3313341_2 700598.Niako_0108 1.489e-140 448.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,4NFKH@976|Bacteroidetes,1IP8F@117747|Sphingobacteriia 976|Bacteroidetes E glutamate synthase gltB - 1.4.1.13,1.4.1.14,1.4.7.1 ko:K00265,ko:K00284 ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230 - R00021,R00093,R00114,R00248,R10086 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase DYD3_k127_3319649_1 929556.Solca_2154 2.144e-94 314.0 COG1652@1|root,COG1652@2|Bacteria,4NJV3@976|Bacteroidetes,1ITMZ@117747|Sphingobacteriia 976|Bacteroidetes S LysM domain - - - - - - - - - - - - - DYD3_k127_3319649_0 929556.Solca_2153 1.331e-199 637.0 COG3501@1|root,COG3501@2|Bacteria,4NFPB@976|Bacteroidetes,1IQM7@117747|Sphingobacteriia 976|Bacteroidetes S Rhs element Vgr protein - - - - - - - - - - - - Phage_GPD DYD3_k127_3319649_2 929556.Solca_2152 2.994e-43 161.0 COG4104@1|root,COG4104@2|Bacteria,4NSCZ@976|Bacteroidetes,1IU0S@117747|Sphingobacteriia 976|Bacteroidetes S PAAR motif - - - - - - - - - - - - PAAR_motif DYD3_k127_3323353_1 700598.Niako_5802 2.411e-124 401.0 COG1774@1|root,COG1774@2|Bacteria,4NENX@976|Bacteroidetes,1IQGD@117747|Sphingobacteriia 976|Bacteroidetes S PFAM PSP1 C-terminal conserved region - - - - - - - - - - - - PSP1 DYD3_k127_3323353_2 1123278.KB893444_gene1674 2.304e-84 289.0 COG1073@1|root,COG1073@2|Bacteria,4NNXQ@976|Bacteroidetes,47PV9@768503|Cytophagia 976|Bacteroidetes S Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_3323353_3 1267211.KI669560_gene2870 1.55e-81 278.0 COG4760@1|root,COG4760@2|Bacteria,4NNIN@976|Bacteroidetes,1IXW4@117747|Sphingobacteriia 976|Bacteroidetes S Bax inhibitor 1 like - - - - - - - - - - - - BaxI_1 DYD3_k127_3323353_0 700598.Niako_5804 7.341e-148 470.0 COG2013@1|root,COG2013@2|Bacteria,4NFNA@976|Bacteroidetes,1IW51@117747|Sphingobacteriia 976|Bacteroidetes S Mitochondrial biogenesis AIM24 - - - - - - - - - - - - AIM24 DYD3_k127_3324072_5 471854.Dfer_0025 3.166e-25 109.0 2E3RG@1|root,32YP4@2|Bacteria,4NUUF@976|Bacteroidetes,47SX9@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3324072_2 760192.Halhy_0882 2.604e-48 183.0 COG2207@1|root,COG2207@2|Bacteria,4NHA5@976|Bacteroidetes,1IWNM@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_3324072_1 925409.KI911562_gene389 5.249e-63 224.0 2B9NZ@1|root,3231D@2|Bacteria,4NR0T@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function (DUF1579) - - - - - - - - - - - - DUF1579 DYD3_k127_3324072_3 1121930.AQXG01000011_gene1757 1.202e-38 148.0 COG3324@1|root,COG3324@2|Bacteria,4NTUQ@976|Bacteroidetes,1IZ1H@117747|Sphingobacteriia 976|Bacteroidetes S Glyoxalase-like domain - - - ko:K06996 - - - - ko00000 - - - - DYD3_k127_3324072_4 204669.Acid345_3839 2.761e-33 136.0 COG0457@1|root,COG0457@2|Bacteria,3Y893@57723|Acidobacteria,2JNSA@204432|Acidobacteriia 204432|Acidobacteriia S Tetratricopeptide repeat - - - - - - - - - - - - - DYD3_k127_3324072_0 700598.Niako_6297 9.653e-74 250.0 29E7I@1|root,3015I@2|Bacteria,4NNFG@976|Bacteroidetes,1IZ95@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1761) - - - - - - - - - - - - DUF1761 DYD3_k127_3324072_6 700598.Niako_6298 3.732e-11 66.0 COG2972@1|root,COG2972@2|Bacteria,4NMUF@976|Bacteroidetes,1J05R@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - His_kinase DYD3_k127_3324198_0 700598.Niako_2527 1.663e-244 761.0 COG3408@1|root,COG3408@2|Bacteria,4NESP@976|Bacteroidetes,1INWR@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Bacterial alpha-L-rhamnosidase - - 3.2.1.40 ko:K05989 - - - - ko00000,ko01000 - - - Bac_rhamnosid,Bac_rhamnosid6H,Bac_rhamnosid_C,Bac_rhamnosid_N DYD3_k127_3324198_1 700598.Niako_2542 3.456e-77 263.0 COG1052@1|root,COG1052@2|Bacteria,4NIHV@976|Bacteroidetes,1IPKW@117747|Sphingobacteriia 976|Bacteroidetes CH D-isomer specific 2-hydroxyacid dehydrogenase hprA - 1.1.1.29 ko:K00018 ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200 M00346 R00717,R01388 RC00031,RC00042 ko00000,ko00001,ko00002,ko01000 - - - 2-Hacid_dh,2-Hacid_dh_C DYD3_k127_3325545_1 1122179.KB890447_gene184 1.428e-33 141.0 COG1361@1|root,COG4447@1|root,COG1361@2|Bacteria,COG4447@2|Bacteria,4NEZQ@976|Bacteroidetes 976|Bacteroidetes DZ Hep Hag repeat protein - - - - - - - - - - - - Sortilin-Vps10 DYD3_k127_3325545_0 700598.Niako_6924 2.03e-149 475.0 COG1995@1|root,COG1995@2|Bacteria,4NEUR@976|Bacteroidetes,1IP2F@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the PdxA family pdxA - 1.1.1.262 ko:K00097 ko00750,ko01100,map00750,map01100 M00124 R05681,R05837,R07406 RC00089,RC00675,RC01475 ko00000,ko00001,ko00002,ko01000 - - - PdxA DYD3_k127_3337272_1 700598.Niako_6622 1.013e-110 361.0 COG0546@1|root,COG0546@2|Bacteria,4PM7Q@976|Bacteroidetes,1J0KR@117747|Sphingobacteriia 976|Bacteroidetes S HAD-hyrolase-like - - - ko:K07025 - - - - ko00000 - - - HAD_2 DYD3_k127_3337272_2 700598.Niako_6621 2.339e-109 356.0 COG0688@1|root,COG0688@2|Bacteria,4NFU1@976|Bacteroidetes,1INZC@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) psd - 4.1.1.65 ko:K01613 ko00564,ko01100,ko01110,map00564,map01100,map01110 M00093 R02055 RC00299 ko00000,ko00001,ko00002,ko01000 - - - PS_Dcarbxylase DYD3_k127_3337272_0 700598.Niako_6619 1.332e-128 417.0 COG0575@1|root,COG0575@2|Bacteria,4PPXI@976|Bacteroidetes,1J13D@117747|Sphingobacteriia 976|Bacteroidetes I Cytidylyltransferase family - - 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_1 DYD3_k127_3337272_3 700598.Niako_6618 2.369e-14 74.0 COG1266@1|root,COG1266@2|Bacteria,4NHE1@976|Bacteroidetes,1ITS1@117747|Sphingobacteriia 976|Bacteroidetes S CAAX protease self-immunity - - - ko:K07052 - - - - ko00000 - - - Abi DYD3_k127_3338612_5 153721.MYP_2127 3.357e-53 201.0 COG0793@1|root,COG0793@2|Bacteria,4NDWU@976|Bacteroidetes,47JTG@768503|Cytophagia 976|Bacteroidetes M Belongs to the peptidase S41A family prc - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 DYD3_k127_3338612_3 1267534.KB906754_gene2794 4.585e-74 254.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - - - - - - - - - - - Glyoxalase DYD3_k127_3338612_2 1357272.AVEO02000133_gene919 2.311e-110 367.0 COG2513@1|root,COG2513@2|Bacteria,1R3SD@1224|Proteobacteria,1RZCP@1236|Gammaproteobacteria,1Z8YF@136849|Pseudomonas syringae group 1236|Gammaproteobacteria G Phosphoenolpyruvate phosphomutase - - - - - - - - - - - - PEP_mutase DYD3_k127_3338612_6 1341155.FSS13T_18920 2.443e-07 58.0 2CDB4@1|root,32WBR@2|Bacteria,4NUFQ@976|Bacteroidetes,1I47Y@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3338612_4 1454007.JAUG01000048_gene1942 8.923e-69 237.0 COG1670@1|root,COG1670@2|Bacteria,4NMB7@976|Bacteroidetes,1IUQX@117747|Sphingobacteriia 976|Bacteroidetes J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 DYD3_k127_3338612_0 926549.KI421517_gene2442 1.746e-196 618.0 COG0673@1|root,COG0673@2|Bacteria,4NE75@976|Bacteroidetes,47JGE@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_3338612_1 1123248.KB893381_gene1008 3.644e-114 381.0 COG3391@1|root,COG3391@2|Bacteria,4P26B@976|Bacteroidetes,1IX5X@117747|Sphingobacteriia 976|Bacteroidetes S amine dehydrogenase activity - - - - - - - - - - - - - DYD3_k127_3357635_1 1121015.N789_09570 9.811e-19 90.0 2CKE6@1|root,32ZEV@2|Bacteria,1NBRM@1224|Proteobacteria,1SCY3@1236|Gammaproteobacteria,1X8E5@135614|Xanthomonadales 135614|Xanthomonadales S Family of unknown function (DUF5329) - - - - - - - - - - - - DUF5329 DYD3_k127_3357635_2 552811.Dehly_0503 2.137e-17 87.0 COG5580@1|root,COG5580@2|Bacteria 2|Bacteria O Activator of Hsp90 ATPase - - - - - - - - - - - - AHSA1 DYD3_k127_3358545_6 215803.DB30_0685 8.011e-26 109.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase DYD3_k127_3358545_2 700598.Niako_2021 1.581e-149 479.0 COG3386@1|root,COG3386@2|Bacteria,4NF4A@976|Bacteroidetes,1IR5U@117747|Sphingobacteriia 976|Bacteroidetes G SMP-30/Gluconolaconase/LRE-like region - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL DYD3_k127_3358545_0 700598.Niako_2020 8.957e-178 561.0 COG0601@1|root,COG0601@2|Bacteria,4NGIJ@976|Bacteroidetes,1IRI6@117747|Sphingobacteriia 976|Bacteroidetes P COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components dppB - - ko:K02033 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1 DYD3_k127_3358545_1 700598.Niako_2019 8.676e-155 499.0 COG2259@1|root,COG2259@2|Bacteria,4NGNF@976|Bacteroidetes,1IPIJ@117747|Sphingobacteriia 976|Bacteroidetes O DoxX family doxX - - - - - - - - - - - DoxX DYD3_k127_3358545_4 925409.KI911562_gene2271 1.674e-76 260.0 28HFG@1|root,2Z7RJ@2|Bacteria,4NFNY@976|Bacteroidetes,1IRWB@117747|Sphingobacteriia 976|Bacteroidetes S Domain of Unknown Function (DUF1599) - - - - - - - - - - - - DUF1599 DYD3_k127_3358545_3 700598.Niako_2018 2.995e-117 383.0 COG0294@1|root,COG0294@2|Bacteria,4NEYJ@976|Bacteroidetes,1IPC6@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives folP - 2.5.1.15 ko:K00796 ko00790,ko01100,map00790,map01100 M00126,M00841 R03066,R03067 RC00121,RC00842 ko00000,ko00001,ko00002,ko01000 - - - Pterin_bind DYD3_k127_3358545_5 700598.Niako_2017 8.755e-27 113.0 COG0545@1|root,COG0545@2|Bacteria,4NDW4@976|Bacteroidetes,1IQ1U@117747|Sphingobacteriia 976|Bacteroidetes O PFAM FKBP-type peptidyl-prolyl cis-trans isomerase ppiB - 5.2.1.8 ko:K01802,ko:K03767 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - FKBP_C,Pro_isomerase DYD3_k127_3382927_4 1250232.JQNJ01000001_gene3860 9.72e-17 80.0 COG1917@1|root,COG1917@2|Bacteria 2|Bacteria L Cupin 2, conserved barrel domain protein - - - - - - - - - - - - AraC_binding,Cupin_2,Cupin_7,DUF4440,HTH_18 DYD3_k127_3382927_0 1250232.JQNJ01000001_gene3859 5.982e-109 359.0 COG2207@1|root,COG2207@2|Bacteria,4NHA5@976|Bacteroidetes,1I053@117743|Flavobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_3382927_1 102125.Xen7305DRAFT_00014920 1.69e-96 328.0 2DBYN@1|root,2ZBWH@2|Bacteria,1GBJR@1117|Cyanobacteria 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD3_k127_3382927_3 1121904.ARBP01000002_gene7126 4.863e-65 238.0 2C34F@1|root,2ZA5Y@2|Bacteria,4NGPA@976|Bacteroidetes,47MYC@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3382927_2 485917.Phep_2228 4.805e-94 313.0 COG2186@1|root,COG2186@2|Bacteria,4NEUP@976|Bacteroidetes,1IWBR@117747|Sphingobacteriia 976|Bacteroidetes K GntR family - - - - - - - - - - - - FCD,GntR DYD3_k127_3397372_1 1122605.KB893639_gene3044 1.246e-214 670.0 COG4102@1|root,COG4102@2|Bacteria,4NE73@976|Bacteroidetes,1IQYR@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD3_k127_3397372_0 471854.Dfer_1595 2.225e-220 692.0 COG2010@1|root,COG2010@2|Bacteria,4NEPV@976|Bacteroidetes,47JYA@768503|Cytophagia 976|Bacteroidetes C Planctomycete cytochrome C - - - - - - - - - - - - PSCyt1,PSCyt2,PSD1 DYD3_k127_3400187_2 700598.Niako_2052 1.655e-58 205.0 COG2304@1|root,COG2304@2|Bacteria,4NFX3@976|Bacteroidetes,1IP2T@117747|Sphingobacteriia 976|Bacteroidetes P von Willebrand factor, type A - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - CarbopepD_reg_2,DUF3520,VWA,vWF_A DYD3_k127_3400187_1 700598.Niako_2054 2.203e-112 366.0 COG0846@1|root,COG0846@2|Bacteria,4NE9Q@976|Bacteroidetes,1INTC@117747|Sphingobacteriia 976|Bacteroidetes K NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form cobB - - ko:K12410 - - - - ko00000,ko01000 - - - SIR2 DYD3_k127_3400187_0 700598.Niako_2057 7.176e-124 402.0 COG1748@1|root,COG1748@2|Bacteria,4NFM8@976|Bacteroidetes,1IQ3W@117747|Sphingobacteriia 976|Bacteroidetes E Saccharopine dehydrogenase - - 1.5.1.10,1.5.1.7 ko:K00290,ko:K00293 ko00300,ko00310,ko01100,ko01110,ko01130,ko01230,map00300,map00310,map01100,map01110,map01130,map01230 M00030,M00032 R00715,R02315 RC00215,RC00217,RC00225,RC01532 ko00000,ko00001,ko00002,ko01000 - - - Sacchrp_dh_C,Sacchrp_dh_NADP DYD3_k127_3402819_1 929703.KE386491_gene3060 1.474e-134 453.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,47JJJ@768503|Cytophagia 976|Bacteroidetes P TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_3402819_2 616991.JPOO01000001_gene4420 1.855e-110 377.0 COG1435@1|root,COG1435@2|Bacteria,4NE0A@976|Bacteroidetes,1I04S@117743|Flavobacteriia,23HB8@178469|Arenibacter 976|Bacteroidetes F SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_3402819_0 1121887.AUDK01000002_gene2177 5.434e-284 895.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1HX4C@117743|Flavobacteriia,2NUUX@237|Flavobacterium 976|Bacteroidetes S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_3403436_2 1202532.FF52_10163 1.336e-37 147.0 COG4319@1|root,COG4319@2|Bacteria,4NS9D@976|Bacteroidetes,1I2TG@117743|Flavobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 DYD3_k127_3403436_0 929556.Solca_0332 2.707e-241 767.0 COG0475@1|root,COG0490@1|root,COG0569@1|root,COG0475@2|Bacteria,COG0490@2|Bacteria,COG0569@2|Bacteria,4NGF6@976|Bacteroidetes,1IQ4D@117747|Sphingobacteriia 976|Bacteroidetes P PFAM sodium hydrogen exchanger nhaA - - ko:K03455 - - - - ko00000 2.A.37 - - Na_H_Exchanger,TrkA_C DYD3_k127_3403436_1 485917.Phep_0445 1.321e-143 465.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes 976|Bacteroidetes H TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_3403810_1 269798.CHU_0863 4.184e-100 333.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_2_3,Glycos_transf_1,Glycos_transf_2 DYD3_k127_3403810_2 1341155.FSS13T_22320 5.735e-75 263.0 COG4122@1|root,COG4122@2|Bacteria,4NJV1@976|Bacteroidetes,1HYRV@117743|Flavobacteriia,2NVI5@237|Flavobacterium 976|Bacteroidetes S Methyltransferase domain - - - - - - - - - - - - Methyltransf_24 DYD3_k127_3403810_0 1121373.KB903632_gene588 3.481e-159 513.0 COG1232@1|root,COG1232@2|Bacteria,4NJNP@976|Bacteroidetes,47NM9@768503|Cytophagia 976|Bacteroidetes H NAD(P)-binding Rossmann-like domain - - - - - - - - - - - - Amino_oxidase,NAD_binding_8 DYD3_k127_3403810_3 269798.CHU_0860 5.795e-74 260.0 COG1215@1|root,COG1215@2|Bacteria,4PM1I@976|Bacteroidetes,47XIG@768503|Cytophagia 976|Bacteroidetes M Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD3_k127_3410343_0 700598.Niako_6935 6.428e-230 718.0 COG2270@1|root,COG2270@2|Bacteria,4NEKI@976|Bacteroidetes,1INX9@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG2270 Permease of the major facilitator superfamily - - - ko:K06902 ko04138,map04138 - - - ko00000,ko00001,ko02000,ko04131 2.A.1.24,9.A.15.1 - - ATG22 DYD3_k127_3410343_1 700598.Niako_6934 1.046e-131 424.0 COG0491@1|root,COG0491@2|Bacteria,4NE98@976|Bacteroidetes,1INUA@117747|Sphingobacteriia 976|Bacteroidetes S beta-lactamase - - - - - - - - - - - - Lactamase_B DYD3_k127_3413816_0 471854.Dfer_1503 1.922e-186 600.0 COG1956@1|root,COG2972@1|root,COG3292@1|root,COG1956@2|Bacteria,COG2972@2|Bacteria,COG3292@2|Bacteria,4NHMQ@976|Bacteroidetes,47P3A@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_3413816_2 471854.Dfer_0148 4.311e-104 343.0 COG3279@1|root,COG3279@2|Bacteria,4NK6R@976|Bacteroidetes,47XDW@768503|Cytophagia 976|Bacteroidetes T Two component transcriptional regulator, LytTR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_3413816_5 700598.Niako_6228 1.711e-28 119.0 COG0745@1|root,COG0745@2|Bacteria,4NPID@976|Bacteroidetes 976|Bacteroidetes KT regulator - - - - - - - - - - - - Response_reg DYD3_k127_3413816_1 929562.Emtol_3284 2.624e-140 466.0 COG2936@1|root,COG2936@2|Bacteria,4NHJU@976|Bacteroidetes,47JHB@768503|Cytophagia 976|Bacteroidetes S X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - ko:K06978 - - - - ko00000 - - - PepX_C,Peptidase_S15 DYD3_k127_3413816_4 700598.Niako_6348 2.461e-31 130.0 2C3CC@1|root,33HJH@2|Bacteria,4NY92@976|Bacteroidetes,1IZ3S@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3413816_3 760192.Halhy_2409 4.833e-53 193.0 COG0664@1|root,COG0664@2|Bacteria,4NMI9@976|Bacteroidetes,1IZ7V@117747|Sphingobacteriia 976|Bacteroidetes T SPTR Protein containing cyclic nucleotide-binding domain - - - - - - - - - - - - cNMP_binding DYD3_k127_3420067_5 700598.Niako_6694 1.216e-85 286.0 COG0671@1|root,COG0671@2|Bacteria,4NGYP@976|Bacteroidetes,1IR1B@117747|Sphingobacteriia 976|Bacteroidetes I PAP2 superfamily - - - - - - - - - - - - PAP2 DYD3_k127_3420067_1 700598.Niako_6693 2.795e-261 812.0 COG1626@1|root,COG1626@2|Bacteria,4NFJW@976|Bacteroidetes,1IP8I@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase, family 37 - - 3.2.1.28 ko:K01194 ko00500,ko01100,map00500,map01100 - R00010 RC00049 ko00000,ko00001,ko00537,ko01000 - GH37 - Trehalase DYD3_k127_3420067_10 1122179.KB890497_gene2818 1.144e-23 109.0 2EBMU@1|root,335N1@2|Bacteria,4PPZS@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3420067_6 1341181.FLJC2902T_03200 1.537e-83 287.0 28IZ7@1|root,2Z8WQ@2|Bacteria,4NIAK@976|Bacteroidetes,1I09F@117743|Flavobacteriia,2NTW2@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3420067_3 700598.Niako_6692 2.97e-132 426.0 COG2602@1|root,COG2602@2|Bacteria,4NH11@976|Bacteroidetes,1IYF8@117747|Sphingobacteriia 976|Bacteroidetes V Penicillin binding protein transpeptidase domain - - 3.5.2.6 ko:K17838 ko01501,map01501 - R06363 RC01499 ko00000,ko00001,ko01000 - - - Transpeptidase DYD3_k127_3420067_2 700598.Niako_6691 9.553e-154 491.0 COG2304@1|root,COG2304@2|Bacteria,4NF7Y@976|Bacteroidetes,1IR1C@117747|Sphingobacteriia 976|Bacteroidetes S von Willebrand factor, type A batB - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - BatA,VWA,VWA_2 DYD3_k127_3420067_7 700598.Niako_6690 1.191e-56 204.0 COG3118@1|root,COG3118@2|Bacteria,4PKEC@976|Bacteroidetes 976|Bacteroidetes O Tetratricopeptide repeat protein batC - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_19,TPR_2 DYD3_k127_3420067_0 700598.Niako_6689 0.0 1080.0 COG0821@1|root,COG0821@2|Bacteria,4NE63@976|Bacteroidetes,1IQVN@117747|Sphingobacteriia 976|Bacteroidetes I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate ispG GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 ko:K03526 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R08689,R10859 RC01486 ko00000,ko00001,ko00002,ko01000 - - - GcpE DYD3_k127_3420067_4 700598.Niako_6688 1.446e-125 409.0 COG2378@1|root,COG2378@2|Bacteria,4NHIC@976|Bacteroidetes,1IPSW@117747|Sphingobacteriia 976|Bacteroidetes K PFAM HTH domain - - - - - - - - - - - - HTH_11,WYL DYD3_k127_3420067_8 700598.Niako_6687 1.985e-56 201.0 COG2318@1|root,COG2318@2|Bacteria,4NTVB@976|Bacteroidetes,1IT9Z@117747|Sphingobacteriia 976|Bacteroidetes S PFAM DinB family - - - - - - - - - - - - DinB DYD3_k127_3420067_9 700598.Niako_6686 2.5e-44 165.0 COG4978@1|root,COG4978@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - GyrI-like DYD3_k127_3422036_2 1122179.KB890423_gene2365 3.884e-70 248.0 COG0296@1|root,COG1404@1|root,COG0296@2|Bacteria,COG1404@2|Bacteria,4NJ7Z@976|Bacteroidetes,1IZWQ@117747|Sphingobacteriia 976|Bacteroidetes G Glycogen recognition site of AMP-activated protein kinase - - - - - - - - - - - - AMPK1_CBM DYD3_k127_3422036_1 1519464.HY22_02900 9.487e-117 384.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - - - - - - - - - - - Glyoxalase DYD3_k127_3422036_3 1140.Synpcc7942_1571 9.266e-59 216.0 COG0580@1|root,COG0580@2|Bacteria,1G3MJ@1117|Cyanobacteria,1H4A2@1129|Synechococcus 1117|Cyanobacteria U Major intrinsic protein - - - ko:K06188 - - - - ko00000,ko02000 1.A.8 - - MIP DYD3_k127_3422036_5 1123248.KB893326_gene1346 2.383e-25 108.0 COG4828@1|root,COG4828@2|Bacteria,4NV5Z@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function (DUF1622) - - - - - - - - - - - - DUF1622 DYD3_k127_3422036_0 1185876.BN8_02801 4.991e-199 634.0 COG2303@1|root,COG2303@2|Bacteria,4NEF2@976|Bacteroidetes,47U8K@768503|Cytophagia 976|Bacteroidetes E GMC oxidoreductase - - - - - - - - - - - - FAD_binding_2,GMC_oxred_C,GMC_oxred_N,NAD_binding_8 DYD3_k127_3422036_4 1185876.BN8_02780 4.013e-51 184.0 COG3350@1|root,COG3350@2|Bacteria,4NR42@976|Bacteroidetes,47XU3@768503|Cytophagia 976|Bacteroidetes S monooxygenase activity - - - - - - - - - - - - YHS DYD3_k127_3422415_1 509635.N824_07005 2.737e-123 398.0 2BZ6M@1|root,2Z7HW@2|Bacteria,4NDZE@976|Bacteroidetes,1INP8@117747|Sphingobacteriia 976|Bacteroidetes S Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_3422415_4 1121287.AUMU01000001_gene1528 1.317e-17 90.0 2E40F@1|root,32YX9@2|Bacteria,4NV5X@976|Bacteroidetes,1I5J3@117743|Flavobacteriia,3ZNS6@59732|Chryseobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3422415_0 700598.Niako_5072 2.059e-133 426.0 COG2197@1|root,COG2197@2|Bacteria,4NKAD@976|Bacteroidetes,1IT3A@117747|Sphingobacteriia 976|Bacteroidetes K Two component transcriptional regulator, LuxR family - - - - - - - - - - - - GerE,Response_reg DYD3_k127_3422415_3 700598.Niako_5073 1.382e-22 100.0 COG0115@1|root,COG0115@2|Bacteria,4NG0G@976|Bacteroidetes,1IPBG@117747|Sphingobacteriia 976|Bacteroidetes EH Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase ilvE - 2.6.1.42,4.1.3.38 ko:K00826,ko:K02619 ko00270,ko00280,ko00290,ko00770,ko00790,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map00790,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R05553,R10991 RC00006,RC00036,RC01843,RC02148 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 DYD3_k127_3426658_1 700598.Niako_0894 1.282e-150 478.0 COG0479@1|root,COG0479@2|Bacteria,4NFR3@976|Bacteroidetes,1IQMQ@117747|Sphingobacteriia 976|Bacteroidetes C Succinate dehydrogenase fumarate reductase Fe-S protein subunit frdB - 1.3.5.1,1.3.5.4 ko:K00240 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - Fer2_3,Fer4_7,Fer4_8 DYD3_k127_3426658_0 1267211.KI669560_gene1526 0.0 1152.0 COG1053@1|root,COG1053@2|Bacteria,4NFDU@976|Bacteroidetes,1IQ4F@117747|Sphingobacteriia 976|Bacteroidetes C Succinate dehydrogenase or fumarate reductase, flavoprotein subunit sdhA - 1.3.5.1,1.3.5.4 ko:K00239 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C DYD3_k127_3426658_2 700598.Niako_0892 3.287e-23 99.0 2CAZH@1|root,2Z7RU@2|Bacteria,4NGM5@976|Bacteroidetes,1ISIA@117747|Sphingobacteriia 976|Bacteroidetes S succinate dehydrogenase sdhC - - ko:K00241 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002 - - - - DYD3_k127_3427131_0 700598.Niako_6538 0.0 1096.0 COG1217@1|root,COG1217@2|Bacteria,4NDVM@976|Bacteroidetes,1IQXV@117747|Sphingobacteriia 976|Bacteroidetes T GTP-binding protein TypA typA - - ko:K06207 - - - - ko00000 - - - EFG_C,GTP_EFTU,GTP_EFTU_D2 DYD3_k127_3427131_1 504472.Slin_5621 4.885e-28 128.0 COG0642@1|root,COG2202@1|root,COG3292@1|root,COG2202@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NDXU@976|Bacteroidetes,47Y2E@768503|Cytophagia 976|Bacteroidetes T Two component regulator three Y domain protein - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_342854_0 700598.Niako_2562 1.081e-261 811.0 COG1640@1|root,COG1640@2|Bacteria,4NF7Z@976|Bacteroidetes,1IPKN@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase, family 77 malQ - 2.4.1.25 ko:K00705 ko00500,ko01100,map00500,map01100 - R05196 RC00049 ko00000,ko00001,ko01000 - GH77 - CBM_20,Glyco_hydro_77 DYD3_k127_342854_1 700598.Niako_2561 6.05e-88 293.0 COG4948@1|root,COG4948@2|Bacteria,4NG8N@976|Bacteroidetes,1IQ9P@117747|Sphingobacteriia 976|Bacteroidetes M Mandelate racemase muconate lactonizing enzyme ykfB GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20,5.1.1.3 ko:K01776,ko:K19802 ko00471,ko01100,map00471,map01100 - R00260,R10938 RC00302,RC03309 ko00000,ko00001,ko01000,ko01011 - - - MR_MLE_C,MR_MLE_N DYD3_k127_343194_4 700598.Niako_3640 4.108e-204 638.0 COG4225@1|root,COG4225@2|Bacteria,4NHK2@976|Bacteroidetes,1IPIP@117747|Sphingobacteriia 976|Bacteroidetes S Glycosyl Hydrolase Family 88 yteR_10 - - - - - - - - - - - Glyco_hydro_88 DYD3_k127_343194_0 714943.Mucpa_5123 0.0 1018.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,1IV57@117747|Sphingobacteriia 976|Bacteroidetes G COGs COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase - - 3.2.1.177,3.2.1.20 ko:K01187,ko:K01811 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - DUF4968,DUF5110,Gal_mutarotas_2,Glyco_hydro_31 DYD3_k127_343194_5 1121957.ATVL01000009_gene1161 6.066e-167 534.0 COG2273@1|root,COG4225@1|root,COG2273@2|Bacteria,COG4225@2|Bacteria,4NF91@976|Bacteroidetes,47MDE@768503|Cytophagia 976|Bacteroidetes G Glycosyl hydrolases family 16 - - - - - - - - - - - - DUF1735,Glyco_hydro_16,Glyco_hydro_43 DYD3_k127_343194_6 700598.Niako_2214 5.851e-152 488.0 COG3239@1|root,COG3239@2|Bacteria,4NERD@976|Bacteroidetes,1IPZG@117747|Sphingobacteriia 976|Bacteroidetes I Fatty acid desaturase - - 1.14.19.3 ko:K00508 ko00591,ko01100,map00591,map01100 - R07063 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase DYD3_k127_343194_8 700598.Niako_2689 2.993e-15 81.0 28K7H@1|root,32S10@2|Bacteria,4NSTB@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - MauE DYD3_k127_343194_1 700598.Niako_3639 2.416e-293 909.0 COG4146@1|root,COG4146@2|Bacteria,4NE9S@976|Bacteroidetes,1INQD@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - ko:K03307 - - - - ko00000 2.A.21 - - SSF DYD3_k127_343194_3 700598.Niako_3638 1.231e-283 877.0 COG2160@1|root,COG2160@2|Bacteria,4NHGG@976|Bacteroidetes,1IPX0@117747|Sphingobacteriia 976|Bacteroidetes G Catalyzes the conversion of L-arabinose to L-ribulose araA - 5.3.1.4 ko:K01804 ko00040,ko01100,map00040,map01100 - R01761 RC00516 ko00000,ko00001,ko01000 - - - Arabinose_Iso_C,Arabinose_Isome DYD3_k127_343194_7 700598.Niako_3637 4.866e-131 420.0 COG0235@1|root,COG0235@2|Bacteria,4NGMP@976|Bacteroidetes,1IPP5@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Class II aldolase adducin araD - 5.1.3.4 ko:K03077 ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120 M00550 R05850 RC01479 ko00000,ko00001,ko00002,ko01000 - - - Aldolase_II DYD3_k127_343194_2 700598.Niako_3636 5.972e-288 890.0 COG1069@1|root,COG1069@2|Bacteria,4NEFQ@976|Bacteroidetes,1IQ36@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the ribulokinase family araB - 2.7.1.16 ko:K00853 ko00040,ko01100,map00040,map01100 - R01526,R02439 RC00002,RC00538 ko00000,ko00001,ko01000 - - - FGGY_C,FGGY_N DYD3_k127_3432459_3 1123278.KB893433_gene631 4.206e-26 109.0 28K3C@1|root,2Z9SH@2|Bacteria,4NKA2@976|Bacteroidetes,47NBG@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3432459_0 1122605.KB893646_gene217 7.986e-230 731.0 COG1649@1|root,COG1649@2|Bacteria,4NFKQ@976|Bacteroidetes,1IQ50@117747|Sphingobacteriia 976|Bacteroidetes S Glycosyl hydrolase-like 10 yngK - - - - - - - - - - - GHL10 DYD3_k127_3432459_2 1121930.AQXG01000001_gene1295 7.455e-31 141.0 COG3876@1|root,COG3876@2|Bacteria 2|Bacteria G Protein conserved in bacteria - - - ko:K01446 - - R04112 RC00064,RC00141 ko00000 - - - Amidase_2 DYD3_k127_3432459_1 743722.Sph21_4314 4.969e-229 730.0 COG0577@1|root,COG0577@2|Bacteria,4NGQQ@976|Bacteroidetes 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_3441134_9 1239962.C943_02373 6.359e-31 125.0 COG0239@1|root,COG0239@2|Bacteria,4NV3N@976|Bacteroidetes,47RZJ@768503|Cytophagia 976|Bacteroidetes D Important for reducing fluoride concentration in the cell, thus reducing its toxicity crcB GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - ko:K06199 - - - - ko00000,ko02000 1.A.43.1,1.A.43.2,1.A.43.3 - - CRCB DYD3_k127_3441134_2 700598.Niako_3948 3.226e-95 315.0 COG0221@1|root,COG0221@2|Bacteria,4NGBU@976|Bacteroidetes,1IQEI@117747|Sphingobacteriia 976|Bacteroidetes C Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions ppa - 3.6.1.1 ko:K01507 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyrophosphatase DYD3_k127_3441134_7 1267211.KI669560_gene1519 4.473e-41 155.0 COG0730@1|root,COG0730@2|Bacteria,4NTZ8@976|Bacteroidetes 976|Bacteroidetes S membrane transporter protein - - - ko:K07090 - - - - ko00000 - - - TauE DYD3_k127_3441134_0 525373.HMPREF0766_14327 1.926e-127 423.0 COG1680@1|root,COG1680@2|Bacteria,4NG6Z@976|Bacteroidetes,1IWG4@117747|Sphingobacteriia 976|Bacteroidetes V Beta-lactamase - - - - - - - - - - - - Beta-lactamase,DUF4870,HTH_3 DYD3_k127_3441134_5 700598.Niako_3949 2.333e-71 244.0 COG2318@1|root,COG2318@2|Bacteria,4NNRD@976|Bacteroidetes,1ISCA@117747|Sphingobacteriia 976|Bacteroidetes S PFAM DinB - - - - - - - - - - - - DinB DYD3_k127_3441134_1 700598.Niako_3950 1.875e-96 323.0 COG0791@1|root,COG0791@2|Bacteria,4NE2T@976|Bacteroidetes,1IRW3@117747|Sphingobacteriia 976|Bacteroidetes M PFAM NlpC P60 family ykfC - - - - - - - - - - - NLPC_P60,SH3_3 DYD3_k127_3441134_3 700598.Niako_3952 1.685e-89 301.0 COG1595@1|root,COG1595@2|Bacteria,4NNEM@976|Bacteroidetes,1IRWR@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_3441134_4 700598.Niako_3954 8.57e-72 245.0 COG0590@1|root,COG0590@2|Bacteria,4NNMU@976|Bacteroidetes,1IT52@117747|Sphingobacteriia 976|Bacteroidetes FJ PFAM Cytidine and deoxycytidylate deaminase zinc-binding region guaD - 3.5.4.3 ko:K01487 ko00230,ko01100,map00230,map01100 - R01676 RC00204 ko00000,ko00001,ko01000 - - - dCMP_cyt_deam_1 DYD3_k127_3441134_10 700598.Niako_3956 8.206e-29 117.0 COG3142@1|root,COG3142@2|Bacteria,4NINY@976|Bacteroidetes,1IRTX@117747|Sphingobacteriia 976|Bacteroidetes P Participates in the control of copper homeostasis cutC - - ko:K06201 - - - - ko00000 - - - CutC DYD3_k127_3443944_0 700598.Niako_4709 1.366e-310 955.0 COG0504@1|root,COG0504@2|Bacteria,4NEWT@976|Bacteroidetes,1IP4J@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates pyrG - 6.3.4.2 ko:K01937 ko00240,ko01100,map00240,map01100 M00052 R00571,R00573 RC00010,RC00074 ko00000,ko00001,ko00002,ko01000 - - - CTP_synth_N,GATase DYD3_k127_3443944_2 700598.Niako_4711 5.122e-127 410.0 COG0345@1|root,COG0345@2|Bacteria,4NE6F@976|Bacteroidetes,1IR2E@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline proC - 1.5.1.2 ko:K00286 ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230 M00015 R01248,R01251,R03291,R03293 RC00054,RC00083 ko00000,ko00001,ko00002,ko01000 - - - F420_oxidored,P5CR_dimer DYD3_k127_3443944_1 700598.Niako_4712 8.085e-161 512.0 COG0451@1|root,COG0451@2|Bacteria,4NIZG@976|Bacteroidetes,1IRDN@117747|Sphingobacteriia 976|Bacteroidetes GM Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose hldD - 5.1.3.20 ko:K03274 ko00540,ko01100,map00540,map01100 M00064 R05176 RC01291 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Epimerase DYD3_k127_3443944_3 700598.Niako_4713 3.282e-09 57.0 COG0046@1|root,COG0046@2|Bacteria,4NETY@976|Bacteroidetes,1IR8F@117747|Sphingobacteriia 976|Bacteroidetes F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL purL - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C,GATase_5 DYD3_k127_3454552_1 700598.Niako_4598 1.359e-80 271.0 COG3078@1|root,COG3078@2|Bacteria,4NIGK@976|Bacteroidetes,1INXJ@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2 DYD3_k127_3454552_0 761193.Runsl_3481 1.988e-213 683.0 COG1629@1|root,COG1629@2|Bacteria,4PKVH@976|Bacteroidetes,47K3W@768503|Cytophagia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_dep_Rec DYD3_k127_3460180_0 700598.Niako_3098 2.179e-143 464.0 COG3214@1|root,COG3214@2|Bacteria,4NF6V@976|Bacteroidetes,1IW75@117747|Sphingobacteriia 976|Bacteroidetes S Winged helix DNA-binding domain - - - ko:K09927 - - - - ko00000 - - - HTH_42 DYD3_k127_3460180_1 860228.Ccan_15580 5.463e-82 286.0 COG1131@1|root,COG1131@2|Bacteria,4NFJD@976|Bacteroidetes,1HXIN@117743|Flavobacteriia,1EQ0G@1016|Capnocytophaga 976|Bacteroidetes V Psort location CytoplasmicMembrane, score - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_3460180_3 1122225.AULQ01000001_gene1469 3.933e-07 63.0 2E4EE@1|root,32Z9N@2|Bacteria,4NV0P@976|Bacteroidetes,1I54D@117743|Flavobacteriia 976|Bacteroidetes S Psort location CytoplasmicMembrane, score 10.00 - - - - - - - - - - - - - DYD3_k127_3460180_2 1434325.AZQN01000002_gene1333 2.291e-25 113.0 COG4886@1|root,COG4886@2|Bacteria 2|Bacteria S regulation of response to stimulus ina - - - - - - - - - - - NACHT DYD3_k127_3460838_0 471854.Dfer_1503 6.08e-142 478.0 COG1956@1|root,COG2972@1|root,COG3292@1|root,COG1956@2|Bacteria,COG2972@2|Bacteria,COG3292@2|Bacteria,4NHMQ@976|Bacteroidetes,47P3A@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_3460838_1 471854.Dfer_1279 4.909e-122 395.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes,47PTI@768503|Cytophagia 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_3473079_1 649349.Lbys_2993 4.241e-13 69.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,47PWE@768503|Cytophagia 976|Bacteroidetes KT Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_3473079_0 700598.Niako_6174 3e-253 796.0 COG2771@1|root,COG3292@1|root,COG2771@2|Bacteria,COG3292@2|Bacteria,4NG28@976|Bacteroidetes 976|Bacteroidetes KT Two component regulator three Y - - - - - - - - - - - - GerE,Reg_prop,Y_Y_Y DYD3_k127_3495996_1 1121897.AUGO01000002_gene2229 6.59e-24 102.0 COG1309@1|root,COG1309@2|Bacteria,4NNK5@976|Bacteroidetes,1I8ZD@117743|Flavobacteriia,2NUT3@237|Flavobacterium 976|Bacteroidetes K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_C_13,TetR_N DYD3_k127_3495996_0 743722.Sph21_4157 1.197e-205 647.0 COG1554@1|root,COG1554@2|Bacteria,4NEWW@976|Bacteroidetes,1IQS8@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-L-fucosidase - - 3.2.1.51 ko:K15923 ko00511,map00511 - - - ko00000,ko00001,ko01000 - GH95 - Glyco_hyd_65N_2 DYD3_k127_3498984_0 1123248.KB893337_gene2412 2.774e-168 539.0 COG1940@1|root,COG1940@2|Bacteria,4NFZ1@976|Bacteroidetes,1IPDD@117747|Sphingobacteriia 976|Bacteroidetes GK ROK family - - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HTH_24,ROK DYD3_k127_3504149_0 700598.Niako_5068 2.628e-179 569.0 COG1793@1|root,COG1793@2|Bacteria,4NEKP@976|Bacteroidetes,1IQCK@117747|Sphingobacteriia 976|Bacteroidetes L DNA ligase lig - 6.5.1.1,6.5.1.6,6.5.1.7 ko:K10747 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00381,R00382,R10822,R10823 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N DYD3_k127_3504149_1 700598.Niako_5067 1.07e-166 529.0 COG1236@1|root,COG1236@2|Bacteria,4NFN7@976|Bacteroidetes,1IPN3@117747|Sphingobacteriia 976|Bacteroidetes J Exonuclease of the beta-lactamase fold involved in RNA processing - - - ko:K07577 - - - - ko00000 - - - Lactamase_B DYD3_k127_3504149_2 700598.Niako_5066 1.357e-151 490.0 COG0683@1|root,COG0683@2|Bacteria,4PMPE@976|Bacteroidetes,1ISIQ@117747|Sphingobacteriia 976|Bacteroidetes E leucine binding - - - - - - - - - - - - ANF_receptor,LysM,Peripla_BP_6 DYD3_k127_3504149_3 700598.Niako_5065 7.73e-82 273.0 COG0518@1|root,COG0519@1|root,COG0518@2|Bacteria,COG0519@2|Bacteria,4NESX@976|Bacteroidetes,1INX4@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the synthesis of GMP from XMP guaA GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase,GMP_synt_C,NAD_synthase DYD3_k127_3510148_1 1121481.AUAS01000002_gene3426 3.234e-47 180.0 COG2931@1|root,COG2931@2|Bacteria,4P26M@976|Bacteroidetes,47TC4@768503|Cytophagia 976|Bacteroidetes Q calcium- and calmodulin-responsive adenylate cyclase activity - - - - - - - - - - - - - DYD3_k127_3510148_0 485918.Cpin_4159 9.675e-98 328.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4PI9B@976|Bacteroidetes,1IW62@117747|Sphingobacteriia 976|Bacteroidetes T Two component regulator three Y - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_3525169_1 485918.Cpin_6911 3.471e-95 314.0 COG1611@1|root,COG1611@2|Bacteria,4NF20@976|Bacteroidetes,1IQ3T@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the LOG family fmt2 - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox DYD3_k127_3525169_0 925409.KI911562_gene1612 1.141e-176 568.0 COG0591@1|root,COG0591@2|Bacteria,4NEF3@976|Bacteroidetes,1IQ8J@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - - - - - - - - - - SSF DYD3_k127_3525169_2 700598.Niako_5510 3.228e-91 302.0 COG1611@1|root,COG1611@2|Bacteria,4NGWU@976|Bacteroidetes,1IS44@117747|Sphingobacteriia 976|Bacteroidetes S Cytokinin riboside 5'-monophosphate phosphoribohydrolase - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox DYD3_k127_3535117_3 700598.Niako_6206 6.026e-17 79.0 COG3460@1|root,COG3460@2|Bacteria,4NQFV@976|Bacteroidetes,1IYP8@117747|Sphingobacteriia 976|Bacteroidetes Q Phenylacetic acid degradation B paaB - - ko:K02610 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001 - - - PaaB DYD3_k127_3535117_1 925409.KI911562_gene1070 9.084e-108 354.0 COG3396@1|root,COG3396@2|Bacteria,4NFIT@976|Bacteroidetes,1IX3A@117747|Sphingobacteriia 976|Bacteroidetes S Phenylacetic acid catabolic protein paaC - 1.14.13.149 ko:K02611 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001,ko01000 - - - PaaA_PaaC DYD3_k127_3535117_2 700598.Niako_6204 4.793e-85 283.0 COG2151@1|root,COG3677@1|root,COG2151@2|Bacteria,COG3677@2|Bacteria,4NMS0@976|Bacteroidetes,1IXUP@117747|Sphingobacteriia 976|Bacteroidetes L Pfam:DUF59 paaD - - ko:K02612 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001 - - - FeS_assembly_P DYD3_k127_3535117_0 700598.Niako_6203 5.471e-118 383.0 COG1024@1|root,COG1024@2|Bacteria,4NHRF@976|Bacteroidetes,1IV58@117747|Sphingobacteriia 976|Bacteroidetes I Enoyl-CoA hydratase/isomerase - - 5.3.3.18 ko:K15866 ko00360,ko01120,map00360,map01120 - R09837,R09839 RC00004,RC00326,RC02689,RC03003 ko00000,ko00001,ko01000 - - - ECH_1 DYD3_k127_3539993_0 1237149.C900_03858 5.701e-173 552.0 COG0477@1|root,COG2814@2|Bacteria,4NFM7@976|Bacteroidetes,47N08@768503|Cytophagia 976|Bacteroidetes EGP Major facilitator superfamily tetA - - ko:K08151 - M00668 - - ko00000,ko00002,ko01504,ko02000 2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75 - - MFS_1,Sugar_tr DYD3_k127_3539993_1 762903.Pedsa_0091 6.645e-96 319.0 COG1801@1|root,COG1801@2|Bacteria,4NQ30@976|Bacteroidetes,1IWW0@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD3_k127_3539993_2 700598.Niako_6508 9.968e-54 193.0 COG4191@1|root,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - - - - - - - - - - - CBS,GAF,HAMP,HATPase_c,HATPase_c_2,HWE_HK,HisKA_2,PAS,PAS_3,PAS_4,dCache_1 DYD3_k127_3539993_3 700598.Niako_6507 2.73e-44 164.0 COG0724@1|root,COG0724@2|Bacteria,4NUIS@976|Bacteroidetes,1ITB6@117747|Sphingobacteriia 976|Bacteroidetes S PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - - - - - - - - - - RRM_1 DYD3_k127_3542140_1 1121373.KB903620_gene2082 4.986e-245 772.0 COG3408@1|root,COG3408@2|Bacteria,4NF09@976|Bacteroidetes,47M96@768503|Cytophagia 976|Bacteroidetes G Glycogen debranching enzyme - - - - - - - - - - - - GDE_C,GDE_N DYD3_k127_3542140_0 504472.Slin_2521 0.0 1258.0 COG3408@1|root,COG3408@2|Bacteria,4PKJG@976|Bacteroidetes,47NHJ@768503|Cytophagia 976|Bacteroidetes G Glycosyl hydrolase family 63 C-terminal domain - - - - - - - - - - - - Glyco_hydro_63 DYD3_k127_3547676_2 742726.HMPREF9448_00670 9.318e-28 119.0 COG0438@1|root,COG0438@2|Bacteria,4NFMB@976|Bacteroidetes,2FMJE@200643|Bacteroidia,22XBH@171551|Porphyromonadaceae 976|Bacteroidetes M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_1_4 DYD3_k127_3547676_1 700598.Niako_2639 2.732e-134 429.0 COG2884@1|root,COG2884@2|Bacteria,4NEP2@976|Bacteroidetes,1IQ4U@117747|Sphingobacteriia 976|Bacteroidetes D ABC transporter ftsE - - ko:K09812 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - ABC_tran DYD3_k127_3547676_0 1237149.C900_00113 1.111e-136 449.0 COG4251@1|root,COG4251@2|Bacteria,4NE3J@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,PAS_9 DYD3_k127_3547853_2 485918.Cpin_1464 5.232e-116 383.0 COG1609@1|root,COG1609@2|Bacteria,4NDW6@976|Bacteroidetes,1IR61@117747|Sphingobacteriia 976|Bacteroidetes K PFAM periplasmic binding protein LacI transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_1,Peripla_BP_3 DYD3_k127_3547853_0 1454007.JAUG01000045_gene3799 4.016e-163 519.0 COG3940@1|root,COG3940@2|Bacteria,4NGA6@976|Bacteroidetes,1IR3I@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 43 family - - - - - - - - - - - - Glyco_hydro_43 DYD3_k127_3547853_1 700598.Niako_4995 1.384e-151 482.0 COG3250@1|root,COG3250@2|Bacteria,4NFPC@976|Bacteroidetes,1IQJ2@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 2 family - - - - - - - - - - - - Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N DYD3_k127_3553539_0 929703.KE386491_gene1729 5.33e-227 721.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_3553539_2 926549.KI421517_gene4053 1.656e-56 216.0 COG0793@1|root,COG0793@2|Bacteria,4NGGJ@976|Bacteroidetes,47PB5@768503|Cytophagia 976|Bacteroidetes M PFAM Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_3553539_1 1453505.JASY01000001_gene3464 1.801e-97 333.0 COG5492@1|root,COG5492@2|Bacteria 2|Bacteria N domain, Protein - - 4.2.2.23 ko:K18197 - - - - ko00000,ko01000 - PL11 - CBM_6,Cadherin-like,Dockerin_1,PATR DYD3_k127_3554887_0 700598.Niako_6015 1.771e-260 809.0 COG0210@1|root,COG2887@1|root,COG0210@2|Bacteria,COG2887@2|Bacteria,4NIIR@976|Bacteroidetes,1IPF7@117747|Sphingobacteriia 976|Bacteroidetes L Belongs to the helicase family. UvrD subfamily - - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C DYD3_k127_3555922_0 700598.Niako_5704 1.659e-115 376.0 COG2326@1|root,COG2326@2|Bacteria,4NFJ5@976|Bacteroidetes,1IR78@117747|Sphingobacteriia 976|Bacteroidetes S Polyphosphate nucleotide phosphotransferase, PPK2 family - - - - - - - - - - - - PPK2 DYD3_k127_3555922_2 700598.Niako_5703 4.688e-51 187.0 COG1970@1|root,COG1970@2|Bacteria,4NQ49@976|Bacteroidetes,1ITFK@117747|Sphingobacteriia 976|Bacteroidetes M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell mscL - - ko:K03282 - - - - ko00000,ko02000 1.A.22.1 - - MscL DYD3_k127_3555922_1 700598.Niako_5702 2.441e-108 357.0 COG3137@1|root,COG3137@2|Bacteria,4NGB2@976|Bacteroidetes,1IPAT@117747|Sphingobacteriia 976|Bacteroidetes M Protein of unknown function (DUF3078) - - - - - - - - - - - - DUF3078 DYD3_k127_3561942_0 700598.Niako_6282 4.986e-191 606.0 COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,4NDXU@976|Bacteroidetes,1IRM3@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - 7TMR-DISM_7TM,GAF,HATPase_c,HisKA,PAS_3,PAS_9,Response_reg DYD3_k127_3561942_1 700598.Niako_6283 3.698e-133 431.0 COG1360@1|root,COG1360@2|Bacteria,4NF2Y@976|Bacteroidetes,1IXIZ@117747|Sphingobacteriia 976|Bacteroidetes N OmpA family - - - ko:K02557 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - OmpA DYD3_k127_3561942_2 1229276.DI53_0953 5.071e-42 158.0 2AN5I@1|root,31D3D@2|Bacteria,4NQTI@976|Bacteroidetes,1ITEI@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4920) - - - - - - - - - - - - DUF4920 DYD3_k127_3566659_3 929556.Solca_2156 2.911e-57 201.0 2DMQT@1|root,32T2H@2|Bacteria,4NN19@976|Bacteroidetes,1ISWP@117747|Sphingobacteriia 976|Bacteroidetes S PFAM T4-like virus tail tube protein gp19 - - - - - - - - - - - - Phage_T4_gp19 DYD3_k127_3566659_2 929556.Solca_2157 1.169e-80 269.0 2DB76@1|root,2Z7JZ@2|Bacteria,4NQDC@976|Bacteroidetes,1ISNB@117747|Sphingobacteriia 976|Bacteroidetes S PFAM T4-like virus tail tube protein gp19 - - - - - - - - - - - - Phage_T4_gp19 DYD3_k127_3566659_0 929556.Solca_2158 8.285e-224 701.0 COG3497@1|root,COG3497@2|Bacteria,4NEKK@976|Bacteroidetes,1IRRV@117747|Sphingobacteriia 976|Bacteroidetes S Phage tail sheath C-terminal domain - - - ko:K06907 - - - - ko00000 - - - Phage_sheath_1,Phage_sheath_1C DYD3_k127_3570717_1 700598.Niako_4932 0.0 1527.0 COG0085@1|root,COG0085@2|Bacteria,4NF8D@976|Bacteroidetes,1INW0@117747|Sphingobacteriia 976|Bacteroidetes K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoB GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03043 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 DYD3_k127_3570717_0 700598.Niako_4931 0.0 2667.0 COG0086@1|root,COG0086@2|Bacteria,4NEMW@976|Bacteroidetes,1IP5J@117747|Sphingobacteriia 976|Bacteroidetes K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 DYD3_k127_3570717_9 700598.Niako_4930 2.771e-49 183.0 COG2825@1|root,COG2825@2|Bacteria,4NQGG@976|Bacteroidetes,1IU3T@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane chaperone Skp - - - ko:K06142 - - - - ko00000 - - - OmpH DYD3_k127_3570717_2 925409.KI911562_gene2815 1.732e-215 679.0 COG0531@1|root,COG0531@2|Bacteria,4NH7J@976|Bacteroidetes,1IPW4@117747|Sphingobacteriia 976|Bacteroidetes E amino acid - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 DYD3_k127_3570717_5 700598.Niako_4928 5.619e-155 495.0 COG2870@1|root,COG2870@2|Bacteria,4NHUV@976|Bacteroidetes,1IQQ3@117747|Sphingobacteriia 976|Bacteroidetes M Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose rfaE - 2.7.1.167,2.7.7.70 ko:K03272 ko00540,ko01100,map00540,map01100 M00064 R05644,R05646 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_like,PfkB DYD3_k127_3570717_7 700598.Niako_4927 2.236e-109 362.0 COG3001@1|root,COG3001@2|Bacteria,4NEQY@976|Bacteroidetes,1IRXQ@117747|Sphingobacteriia 976|Bacteroidetes G PFAM fructosamine kinase - - - - - - - - - - - - Fructosamin_kin DYD3_k127_3570717_4 700598.Niako_4926 1.575e-161 511.0 COG1234@1|root,COG1234@2|Bacteria,4NE1K@976|Bacteroidetes,1IPJ5@117747|Sphingobacteriia 976|Bacteroidetes S Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA rnz GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 ko:K00784 ko03013,map03013 - - - ko00000,ko00001,ko01000,ko03016 - - - Lactamase_B_2 DYD3_k127_3570717_6 700598.Niako_4925 1.06e-149 479.0 COG0329@1|root,COG0329@2|Bacteria,4NFP9@976|Bacteroidetes,1INT7@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) dapA - 4.3.3.7 ko:K01714 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R10147 RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD3_k127_3570717_8 192952.MM_1701 3.357e-83 286.0 COG0702@1|root,arCOG03015@2157|Archaea 2157|Archaea GM NAD-dependent epimerase dehydratase - - - - - - - - - - - - NAD_binding_10,NmrA DYD3_k127_3570717_3 700598.Niako_4924 1.072e-193 608.0 COG0825@1|root,COG0825@2|Bacteria,4NEVU@976|Bacteroidetes,1IP0K@117747|Sphingobacteriia 976|Bacteroidetes I Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA accA - 2.1.3.15,6.4.1.2 ko:K01962 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - ACCA DYD3_k127_3570717_10 1196031.ALEG01000029_gene3679 1.189e-08 67.0 COG0607@1|root,COG0607@2|Bacteria,1VB3C@1239|Firmicutes,4HKWP@91061|Bacilli,1ZH86@1386|Bacillus 91061|Bacilli P Rhodanese Homology Domain - - - - - - - - - - - - Rhodanese DYD3_k127_3583538_2 700598.Niako_6363 5.483e-153 497.0 COG4251@1|root,COG4251@2|Bacteria,4NK9V@976|Bacteroidetes,1IW45@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,PAS_9 DYD3_k127_3583538_3 700598.Niako_6362 2.682e-63 220.0 COG2137@1|root,COG2137@2|Bacteria,4NSAS@976|Bacteroidetes,1ITI6@117747|Sphingobacteriia 976|Bacteroidetes S Modulates RecA activity recX - - ko:K03565 - - - - ko00000,ko03400 - - - RecX DYD3_k127_3583538_1 700598.Niako_6361 6.248e-188 591.0 COG0265@1|root,COG0265@2|Bacteria,4NJVK@976|Bacteroidetes,1IW7X@117747|Sphingobacteriia 976|Bacteroidetes O COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - Trypsin_2 DYD3_k127_3583538_0 700598.Niako_6360 9.394e-195 615.0 28NUA@1|root,2ZBSQ@2|Bacteria,4NMAY@976|Bacteroidetes,1IVZB@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3592496_1 700598.Niako_2539 3.829e-34 149.0 COG1361@1|root,COG1404@1|root,COG1361@2|Bacteria,COG1404@2|Bacteria,4NFMW@976|Bacteroidetes,1IW54@117747|Sphingobacteriia 976|Bacteroidetes O SPTR Peptidase S8 and S53 subtilisin kexin sedolisin - - - - - - - - - - - - PKD,Peptidase_S8 DYD3_k127_3592496_0 700598.Niako_4809 1.093e-47 176.0 COG3324@1|root,COG3324@2|Bacteria 2|Bacteria E translation initiation factor activity - - - ko:K06996 - - - - ko00000 - - - Glyoxalase DYD3_k127_3592496_3 398512.JQKC01000002_gene1828 1.973e-08 63.0 COG2207@1|root,COG2207@2|Bacteria,1V3PR@1239|Firmicutes,24B7M@186801|Clostridia,3WMDE@541000|Ruminococcaceae 186801|Clostridia K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_3592496_2 1278073.MYSTI_07522 1.204e-16 79.0 COG0055@1|root,COG0055@2|Bacteria,1MUFU@1224|Proteobacteria,42KZA@68525|delta/epsilon subdivisions,2WJ1V@28221|Deltaproteobacteria,2YU1A@29|Myxococcales 28221|Deltaproteobacteria F Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits atpD - 3.6.3.14 ko:K02112 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_N DYD3_k127_3595125_0 1123248.KB893320_gene3844 1.265e-209 683.0 COG1629@1|root,COG1629@2|Bacteria,4NF88@976|Bacteroidetes,1IQ3X@117747|Sphingobacteriia 976|Bacteroidetes P Outer membrane protein beta-barrel family - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3 DYD3_k127_3616017_1 697303.Thewi_1823 4.111e-47 179.0 COG3437@1|root,COG5002@1|root,COG3437@2|Bacteria,COG5002@2|Bacteria,1V7YT@1239|Firmicutes,25ET2@186801|Clostridia,42JG8@68295|Thermoanaerobacterales 186801|Clostridia T diguanylate cyclase - - - - - - - - - - - - GGDEF,HD,HD_5,PAS,PAS_4,PAS_9,SBP_bac_3 DYD3_k127_3616017_3 32049.SYNPCC7002_A0794 1.055e-12 69.0 COG0471@1|root,COG0471@2|Bacteria,1G0FA@1117|Cyanobacteria,1GYSS@1129|Synechococcus 1117|Cyanobacteria P sodium sulfate transporter, DASS family protein citT - - - - - - - - - - - CitMHS,Na_sulph_symp,TrkA_C DYD3_k127_3616017_0 485918.Cpin_0994 1.143e-109 363.0 COG1028@1|root,COG1028@2|Bacteria,4NFK6@976|Bacteroidetes,1IQDY@117747|Sphingobacteriia 976|Bacteroidetes IQ PFAM Short-chain dehydrogenase reductase SDR - - - - - - - - - - - - adh_short_C2 DYD3_k127_3620400_2 485918.Cpin_3711 1.608e-103 344.0 COG0438@1|root,COG0438@2|Bacteria,4NITH@976|Bacteroidetes,1ITVN@117747|Sphingobacteriia 976|Bacteroidetes M Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD3_k127_3620400_1 700598.Niako_5056 3.281e-224 695.0 COG0809@1|root,COG0809@2|Bacteria,4NF2T@976|Bacteroidetes,1INNG@117747|Sphingobacteriia 976|Bacteroidetes J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA - 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth DYD3_k127_3620400_0 700598.Niako_5057 1.506e-245 767.0 COG3735@1|root,COG3735@2|Bacteria,4NGNW@976|Bacteroidetes,1IS2W@117747|Sphingobacteriia 976|Bacteroidetes S PFAM GumN - - - - - - - - - - - - TraB DYD3_k127_3624336_3 1122176.KB903536_gene1868 1.003e-21 104.0 COG3391@1|root,COG3391@2|Bacteria,4NSPG@976|Bacteroidetes 976|Bacteroidetes O Belongs to the peptidase S8 family - - - - - - - - - - - - - DYD3_k127_3624336_0 1268622.AVS7_04161 2.559e-125 415.0 COG5295@1|root,COG5295@2|Bacteria,1NI1M@1224|Proteobacteria 1224|Proteobacteria UW Chaperone of endosialidase - - - - - - - - - - - - Peptidase_S74,YadA_head DYD3_k127_3624336_2 1121895.Q765_18515 7.154e-43 164.0 2AVRW@1|root,31MJ8@2|Bacteria,4NQYU@976|Bacteroidetes,1I93C@117743|Flavobacteriia,2NXDT@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3624336_1 1286632.P278_07470 3.092e-115 385.0 COG1680@1|root,COG1680@2|Bacteria,4NGKK@976|Bacteroidetes,1HX0I@117743|Flavobacteriia 976|Bacteroidetes V Beta-lactamase - - - - - - - - - - - - Beta-lactamase,DUF3471,TPR_2 DYD3_k127_3624336_4 555500.I215_06612 3.495e-11 65.0 2DND1@1|root,32WUY@2|Bacteria,4NT80@976|Bacteroidetes,1I4EN@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3632053_1 700598.Niako_5723 4.969e-162 514.0 COG0408@1|root,COG0408@2|Bacteria,4NFZS@976|Bacteroidetes,1IQE1@117747|Sphingobacteriia 976|Bacteroidetes H coproporphyrinogen III oxidase hemF - 1.3.3.3 ko:K00228 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03220 RC00884 ko00000,ko00001,ko00002,ko01000 - - - Coprogen_oxidas DYD3_k127_3632053_0 700598.Niako_5722 2.411e-177 560.0 COG0407@1|root,COG0407@2|Bacteria,4NEQ7@976|Bacteroidetes,1INQH@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III hemE - 4.1.1.37 ko:K01599 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03197,R04972 RC00872 ko00000,ko00001,ko00002,ko01000 - - - URO-D DYD3_k127_3632053_3 700598.Niako_5721 2.234e-52 193.0 COG1587@1|root,COG1587@2|Bacteria,4NNSC@976|Bacteroidetes 976|Bacteroidetes H Uroporphyrinogen-III synthase hemD - 4.2.1.75 ko:K01719 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03165 RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4 DYD3_k127_3632053_2 700598.Niako_5720 1.019e-58 207.0 COG0181@1|root,COG0181@2|Bacteria,4NHH4@976|Bacteroidetes,1ISWJ@117747|Sphingobacteriia 976|Bacteroidetes H Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps hemC - 2.5.1.61 ko:K01749 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00084 RC02317 ko00000,ko00001,ko00002,ko01000 - - - HEM4,Porphobil_deam,Porphobil_deamC DYD3_k127_3642515_1 1519464.HY22_01200 6.787e-135 436.0 COG2366@1|root,COG2366@2|Bacteria 2|Bacteria D antibiotic biosynthetic process - - 3.5.1.97 ko:K07116 - - - - ko00000,ko01000 - - - Penicil_amidase DYD3_k127_3642515_4 761193.Runsl_3533 3.431e-46 169.0 COG2366@1|root,COG2366@2|Bacteria,4NGXQ@976|Bacteroidetes,47JE7@768503|Cytophagia 976|Bacteroidetes S Penicillin amidase - - - - - - - - - - - - Penicil_amidase DYD3_k127_3642515_8 1178825.ALIH01000017_gene692 3.228e-10 72.0 COG1361@1|root,COG5184@1|root,COG1361@2|Bacteria,COG5184@2|Bacteria,4NSKW@976|Bacteroidetes,1I481@117743|Flavobacteriia 976|Bacteroidetes DMZ domain, Protein - - - - - - - - - - - - - DYD3_k127_3642515_9 1434325.AZQN01000003_gene2292 6.18e-06 58.0 COG1075@1|root,COG1075@2|Bacteria 2|Bacteria KLT acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - - - - - - - - - - - DYD3_k127_3642515_0 925409.KI911562_gene300 1.196e-162 520.0 COG2355@1|root,COG2355@2|Bacteria,4NEBG@976|Bacteroidetes,1IQAA@117747|Sphingobacteriia 976|Bacteroidetes E Membrane dipeptidase (Peptidase family M19) - - 3.4.13.19 ko:K01273 - - - - ko00000,ko00537,ko01000,ko01002,ko04147 - - - Peptidase_M19 DYD3_k127_3642515_3 700598.Niako_5363 2.86e-89 302.0 COG0705@1|root,COG0705@2|Bacteria,4NECA@976|Bacteroidetes 976|Bacteroidetes S Rhomboid family - - - - - - - - - - - - Rhomboid DYD3_k127_3642515_6 700598.Niako_6459 1.546e-30 121.0 COG3237@1|root,COG3237@2|Bacteria,4NUMZ@976|Bacteroidetes,1ITX1@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the UPF0337 (CsbD) family - - - - - - - - - - - - CsbD DYD3_k127_3642515_2 700598.Niako_6461 3.817e-96 317.0 28H8R@1|root,2Z7KJ@2|Bacteria,4NGZN@976|Bacteroidetes,1IY2W@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3642515_5 1443665.JACA01000001_gene3036 2.6e-43 183.0 COG3291@1|root,COG3291@2|Bacteria,4PKMZ@976|Bacteroidetes,1I9DA@117743|Flavobacteriia,2YJ61@290174|Aquimarina 976|Bacteroidetes S Fibronectin type 3 domain - - - - - - - - - - - - - DYD3_k127_3642515_7 1443665.JACA01000001_gene3058 3.91e-22 113.0 COG1520@1|root,COG1520@2|Bacteria,4NEVC@976|Bacteroidetes,1IJFE@117743|Flavobacteriia,2YJ09@290174|Aquimarina 976|Bacteroidetes S Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - - - - - - - - - - - DYD3_k127_3644997_0 1123248.KB893328_gene913 1.541e-124 402.0 COG1858@1|root,COG1858@2|Bacteria,4NJ4X@976|Bacteroidetes 976|Bacteroidetes P cytochrome C peroxidase - - - - - - - - - - - - - DYD3_k127_3644997_1 1034807.FBFL15_0915 7.754e-20 102.0 2A2GV@1|root,30QU7@2|Bacteria,4NYES@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3679767_3 700598.Niako_5114 6.038e-61 212.0 COG0142@1|root,COG0142@2|Bacteria,4NET2@976|Bacteroidetes,1INM5@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the FPP GGPP synthase family ispB - 2.5.1.90 ko:K02523 ko00900,ko01110,map00900,map01110 - R09248 RC00279 ko00000,ko00001,ko01000,ko01006 - - - polyprenyl_synt DYD3_k127_3679767_0 700598.Niako_5115 2.367e-299 925.0 COG0608@1|root,COG0608@2|Bacteria,4NDW1@976|Bacteroidetes,1IQ3R@117747|Sphingobacteriia 976|Bacteroidetes L TIGRFAM single-stranded-DNA-specific exonuclease RecJ recJ - - ko:K07462 ko03410,ko03430,ko03440,map03410,map03430,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DHH,DHHA1 DYD3_k127_3679767_2 700598.Niako_5116 1.606e-135 437.0 COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,4NJNH@976|Bacteroidetes,1IY4Z@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator, AraC - - - - - - - - - - - - AraC_binding,HTH_18 DYD3_k127_3679767_1 485918.Cpin_2783 9.905e-162 517.0 COG0845@1|root,COG0845@2|Bacteria,4NEXN@976|Bacteroidetes,1INQ5@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - Biotin_lipoyl_2,HlyD_D23 DYD3_k127_368122_1 700598.Niako_6109 1.268e-63 224.0 COG1595@1|root,COG1595@2|Bacteria,4NR0P@976|Bacteroidetes,1J0AP@117747|Sphingobacteriia 976|Bacteroidetes K PFAM RNA polymerase sigma factor 70, region 4 type 2 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_368122_0 700598.Niako_6108 7.088e-79 277.0 COG3712@1|root,COG3712@2|Bacteria,4NM0I@976|Bacteroidetes 976|Bacteroidetes PT Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_368122_2 1267211.KI669560_gene1247 9.698e-18 90.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IP84@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_3686459_1 945713.IALB_3108 2.608e-42 158.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c cccE - - - - - - - - - - - Cytochrom_C,Cytochrome_CBB3 DYD3_k127_3686459_0 700598.Niako_4352 6.663e-235 739.0 COG1228@1|root,COG4538@1|root,COG1228@2|Bacteria,COG4538@2|Bacteria,4NGGD@976|Bacteroidetes 976|Bacteroidetes Q amidohydrolase - - - - - - - - - - - - Amidohydro_1,SnoaL_2 DYD3_k127_3695617_9 700598.Niako_1885 1.287e-09 59.0 COG0767@1|root,COG0767@2|Bacteria,4NF7X@976|Bacteroidetes,1IPKD@117747|Sphingobacteriia 976|Bacteroidetes Q COGs COG0767 ABC-type transport system involved in resistance to organic solvents permease component - - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE DYD3_k127_3695617_2 925409.KI911562_gene2540 2.549e-98 332.0 COG1503@1|root,COG1503@2|Bacteria,4PGZN@976|Bacteroidetes,1IUTV@117747|Sphingobacteriia 976|Bacteroidetes J translation release factor activity - - - - - - - - - - - - - DYD3_k127_3695617_0 700598.Niako_3260 2.883e-148 477.0 COG0628@1|root,COG0628@2|Bacteria,4NPIX@976|Bacteroidetes,1IVAD@117747|Sphingobacteriia 976|Bacteroidetes S AI-2E family transporter - - - - - - - - - - - - AI-2E_transport DYD3_k127_3695617_3 700598.Niako_5769 9.737e-95 319.0 COG3637@1|root,COG3637@2|Bacteria,4NE33@976|Bacteroidetes,1IWNX@117747|Sphingobacteriia 976|Bacteroidetes M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - - DYD3_k127_3695617_5 700598.Niako_4050 4.604e-80 270.0 COG2353@1|root,COG2353@2|Bacteria,4NSJH@976|Bacteroidetes,1IY6E@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Lipid polyisoprenoid-binding, YceI-like - - - - - - - - - - - - YceI DYD3_k127_3695617_8 700598.Niako_3289 2.063e-34 135.0 COG3748@1|root,COG3748@2|Bacteria 2|Bacteria S Urate oxidase N-terminal - - - - - - - - - - - - Laminin_G_3,PSCyt1,PSCyt2,PSD1,Urate_ox_N DYD3_k127_3695617_1 700598.Niako_3288 4.407e-101 334.0 COG2010@1|root,COG2010@2|Bacteria,4PEWN@976|Bacteroidetes,1IXW6@117747|Sphingobacteriia 976|Bacteroidetes C Cytochrome c - - - - - - - - - - - - PSCyt1 DYD3_k127_3695617_6 1123248.KB893348_gene195 4.178e-55 202.0 COG3279@1|root,COG3279@2|Bacteria,4NGBF@976|Bacteroidetes,1ISF2@117747|Sphingobacteriia 976|Bacteroidetes T Response regulator receiver domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_3695617_4 700598.Niako_4316 2.005e-87 296.0 COG1664@1|root,COG1664@2|Bacteria,4NJ7C@976|Bacteroidetes,1IY3N@117747|Sphingobacteriia 976|Bacteroidetes M Polymer-forming cytoskeletal - - - - - - - - - - - - - DYD3_k127_3714491_0 504472.Slin_2519 7.624e-154 492.0 COG3386@1|root,COG3386@2|Bacteria,4NS13@976|Bacteroidetes,47UF3@768503|Cytophagia 976|Bacteroidetes G SMP-30/Gluconolaconase/LRE-like region - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL DYD3_k127_3714491_2 700598.Niako_5819 8.83e-57 205.0 COG1028@1|root,COG1028@2|Bacteria,4NQP4@976|Bacteroidetes,1IXUF@117747|Sphingobacteriia 976|Bacteroidetes IQ SPTR Short-chain dehydrogenase reductase SDR - - - - - - - - - - - - adh_short DYD3_k127_3714491_4 1296416.JACB01000044_gene5006 4.389e-47 179.0 29EN4@1|root,301K2@2|Bacteria,4NRU9@976|Bacteroidetes,1I78W@117743|Flavobacteriia,2YK8K@290174|Aquimarina 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3714491_1 1443665.JACA01000041_gene1505 2.618e-126 413.0 COG2146@1|root,COG2717@1|root,COG2146@2|Bacteria,COG2717@2|Bacteria,4NJUW@976|Bacteroidetes,1I76G@117743|Flavobacteriia,2YKJR@290174|Aquimarina 976|Bacteroidetes P Ferric reductase like transmembrane component - - - - - - - - - - - - Ferric_reduct,Rieske DYD3_k127_3714491_6 1185876.BN8_02791 7.344e-06 53.0 2ERPJ@1|root,32Q38@2|Bacteria,4PBH7@976|Bacteroidetes,47VW1@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3714491_5 489825.LYNGBM3L_01330 2.599e-10 63.0 2E14K@1|root,32WJQ@2|Bacteria,1G825@1117|Cyanobacteria,1HGGM@1150|Oscillatoriales 1117|Cyanobacteria - - - - - - - - - - - - - - - DYD3_k127_3714491_3 1122179.KB890423_gene2365 1.634e-48 179.0 COG0296@1|root,COG1404@1|root,COG0296@2|Bacteria,COG1404@2|Bacteria,4NJ7Z@976|Bacteroidetes,1IZWQ@117747|Sphingobacteriia 976|Bacteroidetes G Glycogen recognition site of AMP-activated protein kinase - - - - - - - - - - - - AMPK1_CBM DYD3_k127_3721850_0 700598.Niako_1181 0.0 1011.0 COG2982@1|root,COG2982@2|Bacteria,4NEJQ@976|Bacteroidetes,1IRAR@117747|Sphingobacteriia 976|Bacteroidetes M AsmA-like C-terminal region - - - - - - - - - - - - AsmA,AsmA_2 DYD3_k127_3732977_1 760192.Halhy_4114 3.646e-18 86.0 2C5EY@1|root,31EA9@2|Bacteria,4NYA8@976|Bacteroidetes 976|Bacteroidetes S Domain of unknown function (DUF4160) - - - - - - - - - - - - DUF4160 DYD3_k127_3732977_0 700598.Niako_2380 0.0 1211.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,1IQRN@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 31 family - - 3.2.1.177 ko:K01811 - - - - ko00000,ko01000 - GH31 - DUF4968,DUF5110,Gal_mutarotas_2,Glyco_hydro_31,PA14 DYD3_k127_374673_7 700598.Niako_6879 2.057e-23 105.0 2AC8X@1|root,311TK@2|Bacteria,4PGP2@976|Bacteroidetes,1IUCE@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_374673_5 700598.Niako_6880 3.019e-109 354.0 COG1595@1|root,COG1595@2|Bacteria,4NMC0@976|Bacteroidetes,1IQKN@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily rpoE - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_374673_1 700598.Niako_6883 6.631e-188 589.0 COG3958@1|root,COG3958@2|Bacteria,4NEI8@976|Bacteroidetes,1IR3A@117747|Sphingobacteriia 976|Bacteroidetes G Transketolase dxs - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C DYD3_k127_374673_0 700598.Niako_6884 2.338e-202 632.0 COG1087@1|root,COG1087@2|Bacteria,4NEM9@976|Bacteroidetes,1INXE@117747|Sphingobacteriia 976|Bacteroidetes M PFAM NAD dependent epimerase dehydratase family galE - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd DYD3_k127_374673_3 700598.Niako_6885 3.735e-168 531.0 COG1209@1|root,COG1209@2|Bacteria,4NE1U@976|Bacteroidetes,1IPV3@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis rfbA - 2.7.7.24 ko:K00973 ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130 M00793 R02328 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase DYD3_k127_374673_2 1267211.KI669560_gene2849 5.197e-172 544.0 COG0306@1|root,COG0306@2|Bacteria,4NE7J@976|Bacteroidetes,1IPR3@117747|Sphingobacteriia 976|Bacteroidetes P phosphate transporter - - - ko:K03306 - - - - ko00000 2.A.20 - - PHO4 DYD3_k127_374673_4 700598.Niako_6887 6.92e-126 404.0 COG1392@1|root,COG1392@2|Bacteria,4NI25@976|Bacteroidetes,1INNB@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG1392 Phosphate transport regulator (distant homolog of PhoU) - - - ko:K07220 - - - - ko00000 - - - PhoU_div DYD3_k127_374673_6 485918.Cpin_1222 2.868e-44 164.0 COG3746@1|root,COG3746@2|Bacteria,4NIRE@976|Bacteroidetes,1IVNH@117747|Sphingobacteriia 976|Bacteroidetes P phosphate-selective porin O and P - - - - - - - - - - - - Porin_O_P DYD3_k127_3752759_0 1123248.KB893386_gene1969 2.382e-206 646.0 COG1012@1|root,COG1012@2|Bacteria,4NEB7@976|Bacteroidetes,1IPQB@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the aldehyde dehydrogenase family - - 1.2.1.3 ko:K00128 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD3_k127_3752759_1 96561.Dole_2100 3.126e-59 213.0 COG2518@1|root,COG2518@2|Bacteria,1N1UG@1224|Proteobacteria,430M1@68525|delta/epsilon subdivisions,2WVSY@28221|Deltaproteobacteria 28221|Deltaproteobacteria O Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins - - - - - - - - - - - - - DYD3_k127_3752769_0 504472.Slin_0936 2.701e-172 552.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_3752769_1 760192.Halhy_2193 3.051e-65 231.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IW4Z@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_3753110_0 929713.NIASO_07425 4.433e-176 572.0 COG0577@1|root,COG0577@2|Bacteria,4NIPW@976|Bacteroidetes 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_3754919_1 1121904.ARBP01000006_gene4026 2.725e-71 250.0 COG4339@1|root,COG4339@2|Bacteria,4PKIS@976|Bacteroidetes,47KP1@768503|Cytophagia 976|Bacteroidetes S PFAM Metal-dependent phosphohydrolase, HD - - - - - - - - - - - - HD DYD3_k127_3754919_0 700598.Niako_3721 4.787e-197 641.0 COG4775@1|root,COG4775@2|Bacteria,4NF9N@976|Bacteroidetes,1IPKR@117747|Sphingobacteriia 976|Bacteroidetes M metallophosphoesterase - - - - - - - - - - - - Bac_surface_Ag,Metallophos DYD3_k127_3763645_0 700598.Niako_1164 3.434e-216 676.0 COG1377@1|root,COG1377@2|Bacteria,4NISS@976|Bacteroidetes,1IUGE@117747|Sphingobacteriia 976|Bacteroidetes NU Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin - - - - - - - - - - - - - DYD3_k127_3763645_1 925409.KI911562_gene2438 2.702e-35 137.0 COG1012@1|root,COG1012@2|Bacteria,4NFTW@976|Bacteroidetes,1IWY5@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the aldehyde dehydrogenase family pruA - 1.2.1.88,1.5.5.2 ko:K00294,ko:K13821 ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130 - R00245,R00707,R00708,R01253,R04444,R04445,R05051 RC00080,RC00083,RC00216,RC00242,RC00255 ko00000,ko00001,ko01000,ko03000 - - - Aldedh,Pro_dh DYD3_k127_3765238_3 641526.ADIWIN_2181 1.125e-42 167.0 COG2885@1|root,COG2885@2|Bacteria,4NECX@976|Bacteroidetes,1HZVB@117743|Flavobacteriia 976|Bacteroidetes M Cysteine-rich secretory protein family - - - - - - - - - - - - CAP DYD3_k127_3765238_2 700598.Niako_2158 2.137e-52 189.0 COG0517@1|root,COG0517@2|Bacteria 2|Bacteria S IMP dehydrogenase activity - - - - - - - - - - - - CBS DYD3_k127_3765238_0 700598.Niako_2157 4.158e-194 615.0 COG1649@1|root,COG1649@2|Bacteria,4NJ45@976|Bacteroidetes,1IPI1@117747|Sphingobacteriia 976|Bacteroidetes S Sialate O-acetylesterase - - 3.1.1.53 ko:K05970 - - - - ko00000,ko01000 - - - SASA DYD3_k127_3765238_1 1227739.Hsw_1983 2.373e-109 370.0 COG2353@1|root,COG2353@2|Bacteria 2|Bacteria O YceI-like domain - - - - - - - - - - - - TIG DYD3_k127_3765238_4 388413.ALPR1_14879 6.322e-05 51.0 29TGV@1|root,30EQ4@2|Bacteria,4NQ0K@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3785083_4 1121896.JMLU01000021_gene770 3.613e-78 277.0 COG3210@1|root,COG5295@1|root,COG3210@2|Bacteria,COG5295@2|Bacteria,4NJTK@976|Bacteroidetes,1HZNB@117743|Flavobacteriia,2NVE3@237|Flavobacterium 976|Bacteroidetes UW Chaperone of endosialidase - - - - - - - - - - - - Peptidase_S74 DYD3_k127_3785083_6 1469557.JSWF01000015_gene2720 5.13e-37 154.0 COG1520@1|root,COG1520@2|Bacteria,4NZRS@976|Bacteroidetes 976|Bacteroidetes S Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - - - - - - - - - - - DYD3_k127_3785083_2 700598.Niako_1906 3.611e-86 290.0 COG1136@1|root,COG1136@2|Bacteria,4NFCG@976|Bacteroidetes,1IQRF@117747|Sphingobacteriia 976|Bacteroidetes V Part of the ABC transporter complex LolCDE involved in the translocation of - - - ko:K09810 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.125 - - ABC_tran DYD3_k127_3785083_0 700598.Niako_1907 7.364e-150 487.0 COG4591@1|root,COG4591@2|Bacteria,4NHBR@976|Bacteroidetes,1IRPD@117747|Sphingobacteriia 976|Bacteroidetes M COGs COG4591 ABC-type transport system involved in lipoprotein release permease component lolC - - ko:K09808 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko02000 3.A.1.125 - - FtsX,MacB_PCD DYD3_k127_3785083_1 700598.Niako_1908 2.532e-111 371.0 COG0845@1|root,COG0845@2|Bacteria,4NITE@976|Bacteroidetes,1ISHH@117747|Sphingobacteriia 976|Bacteroidetes M SPTR Efflux transporter, RND family, MFP subunit - - - ko:K02005 - - - - ko00000 - - - HlyD_3,HlyD_D23 DYD3_k127_3785083_3 700598.Niako_2303 9.142e-80 276.0 COG0589@1|root,COG0589@2|Bacteria,4NHBB@976|Bacteroidetes,1IU5A@117747|Sphingobacteriia 976|Bacteroidetes T COG0589 Universal stress protein UspA and related nucleotide-binding - - - - - - - - - - - - Usp DYD3_k127_3785083_5 1123248.KB893326_gene1434 3.725e-73 252.0 COG1926@1|root,COG1926@2|Bacteria,4NRU7@976|Bacteroidetes,1IYRM@117747|Sphingobacteriia 976|Bacteroidetes S Phosphoribosyl transferase domain - - - ko:K07100 - - - - ko00000 - - - Pribosyltran DYD3_k127_3785083_7 1123248.KB893326_gene1451 1.119e-35 140.0 COG2149@1|root,COG2149@2|Bacteria,4NSIV@976|Bacteroidetes,1IYG8@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF202) - - - ko:K00389 - - - - ko00000 - - - DUF202 DYD3_k127_3785083_8 1144313.PMI10_00020 1.825e-07 58.0 COG2730@1|root,COG2730@2|Bacteria,4NEU5@976|Bacteroidetes,1I0W2@117743|Flavobacteriia,2NTBZ@237|Flavobacterium 976|Bacteroidetes G Belongs to the glycosyl hydrolase 5 (cellulase A) family celA GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0033946,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0052736,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - BACON,Cellulase DYD3_k127_3790037_0 700598.Niako_5752 1.19e-181 571.0 COG0172@1|root,COG0172@2|Bacteria,4NED6@976|Bacteroidetes,1IQMK@117747|Sphingobacteriia 976|Bacteroidetes J seryl-tRNA synthetase serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b DYD3_k127_3790037_2 700598.Niako_5753 4.905e-23 107.0 2EK5X@1|root,33DWB@2|Bacteria 2|Bacteria S Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl DYD3_k127_3790037_1 700598.Niako_5754 1.252e-179 567.0 COG5267@1|root,COG5267@2|Bacteria,4NHSB@976|Bacteroidetes,1IR4K@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1800) - - - - - - - - - - - - DUF1800 DYD3_k127_3790328_2 1392488.JHZY01000004_gene3112 1.451e-110 363.0 COG0520@1|root,COG0520@2|Bacteria,4NM0W@976|Bacteroidetes,1I00M@117743|Flavobacteriia,2XJWU@283735|Leeuwenhoekiella 976|Bacteroidetes E Aminotransferase class-V - - - - - - - - - - - - Aminotran_5 DYD3_k127_3790328_0 1131812.JQMS01000001_gene413 1.428e-193 614.0 COG5520@1|root,COG5520@2|Bacteria,4NF4C@976|Bacteroidetes,1HZ2G@117743|Flavobacteriia,2NSZB@237|Flavobacterium 976|Bacteroidetes G Belongs to the glycosyl hydrolase 30 family - - 3.2.1.45 ko:K01201 ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142 - R01498 RC00059,RC00451 ko00000,ko00001,ko01000 - GH30 - Glyco_hydro_30,Glyco_hydro_30C DYD3_k127_3790328_1 700598.Niako_6207 1.633e-186 586.0 COG3396@1|root,COG3396@2|Bacteria,4NFJN@976|Bacteroidetes,1IVM8@117747|Sphingobacteriia 976|Bacteroidetes S Phenylacetic acid catabolic protein paaA - 1.14.13.149 ko:K02609 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001,ko01000 - - - PaaA_PaaC DYD3_k127_3790328_3 272559.BF9343_4016 1.282e-19 90.0 COG3646@1|root,COG3646@2|Bacteria,4PM3Z@976|Bacteroidetes,2G3A7@200643|Bacteroidia,4AWCJ@815|Bacteroidaceae 976|Bacteroidetes S ORF6N domain - - - - - - - - - - - - ORF6N DYD3_k127_3790649_2 1296415.JACC01000001_gene3484 0.0005787 45.0 COG1529@1|root,COG1529@2|Bacteria,4NFFU@976|Bacteroidetes,1HXJS@117743|Flavobacteriia,2YHQ2@290174|Aquimarina 976|Bacteroidetes C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - 1.3.99.16 ko:K07303 - - - - ko00000,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD3_k127_3790649_1 700598.Niako_3559 2.765e-82 275.0 COG2080@1|root,COG2080@2|Bacteria,4NM72@976|Bacteroidetes,1ISPU@117747|Sphingobacteriia 976|Bacteroidetes C PFAM 2Fe-2S binding iorA5 - 1.3.99.16 ko:K07302 - - - - ko00000,ko01000 - - - Fer2,Fer2_2 DYD3_k127_3790649_0 1123248.KB893318_gene4099 1.822e-160 511.0 COG0684@1|root,COG0684@2|Bacteria,4NF3M@976|Bacteroidetes,1IP7I@117747|Sphingobacteriia 976|Bacteroidetes M Pfam:Methyltransf_6 - - - - - - - - - - - - RraA-like DYD3_k127_3790720_1 485918.Cpin_3700 1.59e-66 246.0 COG3307@1|root,COG3307@2|Bacteria,4NGGY@976|Bacteroidetes,1IQXP@117747|Sphingobacteriia 976|Bacteroidetes M O-Antigen ligase - - - - - - - - - - - - Wzy_C DYD3_k127_3790720_2 485918.Cpin_3699 8.855e-34 140.0 COG1538@1|root,COG1538@2|Bacteria,4NY7T@976|Bacteroidetes 976|Bacteroidetes MU Outer membrane efflux protein - - - - - - - - - - - - OEP DYD3_k127_3790720_0 755732.Fluta_0716 2.936e-71 255.0 COG1835@1|root,COG1835@2|Bacteria,4PIH2@976|Bacteroidetes,1IGD6@117743|Flavobacteriia,2PBU2@246874|Cryomorphaceae 2|Bacteria I Acyltransferase family - - - - - - - - - - - - Acyl_transf_3 DYD3_k127_3790720_3 1194972.MVAC_26527 3.616e-06 57.0 COG1807@1|root,COG1807@2|Bacteria,2H2FK@201174|Actinobacteria 201174|Actinobacteria M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - - - - - - - - - - - DYD3_k127_3793941_1 760192.Halhy_3917 9.572e-229 733.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ9X@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_3793941_0 1185876.BN8_00896 7.861e-257 816.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47P60@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_3793941_2 700598.Niako_5205 2.309e-141 459.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IV3C@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_3794272_1 526218.Sterm_3062 7.146e-114 385.0 COG4676@1|root,COG4783@1|root,COG4676@2|Bacteria,COG4783@2|Bacteria 2|Bacteria L chaperone-mediated protein folding - - - - - - - - - - - - CarbopepD_reg_2,DUF2135,Plug,VIT,VWA_3 DYD3_k127_3794272_3 1122605.KB893646_gene125 1.129e-09 63.0 COG0739@1|root,COG0739@2|Bacteria,4NPNT@976|Bacteroidetes 976|Bacteroidetes M peptidase M23 - - - - - - - - - - - - Peptidase_M23 DYD3_k127_3794272_0 700598.Niako_6308 4.472e-127 411.0 COG0300@1|root,COG0300@2|Bacteria,4NEMK@976|Bacteroidetes,1IS4Y@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the short-chain dehydrogenases reductases (SDR) family - - - - - - - - - - - - adh_short DYD3_k127_3794272_2 700598.Niako_6309 7.124e-50 182.0 COG3201@1|root,COG3201@2|Bacteria,4NFJI@976|Bacteroidetes 976|Bacteroidetes H nicotinamide mononucleotide transporter pnuC - - ko:K03811 - - - - ko00000,ko02000 4.B.1.1 - - NMN_transporter DYD3_k127_3803363_2 700598.Niako_6428 8.223e-206 643.0 COG0404@1|root,COG0404@2|Bacteria,4NF7S@976|Bacteroidetes,1IPCZ@117747|Sphingobacteriia 976|Bacteroidetes E The glycine cleavage system catalyzes the degradation of glycine gcvT - 2.1.2.10 ko:K00605 ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200 M00532 R01221,R02300,R04125 RC00022,RC00069,RC00183,RC02834 ko00000,ko00001,ko00002,ko01000 - - - GCV_T,GCV_T_C DYD3_k127_3803363_6 700598.Niako_6429 1.278e-71 244.0 COG4276@1|root,COG4276@2|Bacteria,4NQ3V@976|Bacteroidetes,1IYMM@117747|Sphingobacteriia 976|Bacteroidetes S Cell division protein - - - - - - - - - - - - - DYD3_k127_3803363_3 700598.Niako_6430 6.532e-133 426.0 COG2045@1|root,COG2045@2|Bacteria,4NG1A@976|Bacteroidetes,1IPNP@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the ComB family comB - 3.1.3.71 ko:K05979 ko00680,ko01120,map00680,map01120 M00358 R05789 RC00428 ko00000,ko00001,ko00002,ko01000 - - - 2-ph_phosp DYD3_k127_3803363_4 1237149.C900_03534 4.533e-95 324.0 COG0668@1|root,COG0668@2|Bacteria,4NHU7@976|Bacteroidetes,47P5J@768503|Cytophagia 976|Bacteroidetes M Mechanosensitive ion channel - - - ko:K16052 - - - - ko00000,ko02000 1.A.23.4 - - MS_channel DYD3_k127_3803363_0 700598.Niako_6431 2.494e-286 886.0 COG1158@1|root,COG1158@2|Bacteria,4NEFP@976|Bacteroidetes,1IPNZ@117747|Sphingobacteriia 976|Bacteroidetes K Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template rho - - ko:K03628 ko03018,map03018 - - - ko00000,ko00001,ko03019,ko03021 - - - ATP-synt_ab,Rho_N,Rho_RNA_bind DYD3_k127_3803363_9 867902.Ornrh_0615 8.883e-10 68.0 2DY5U@1|root,3489R@2|Bacteria,4P6BW@976|Bacteroidetes,1IA85@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3803363_7 700598.Niako_6432 4.144e-36 138.0 COG2154@1|root,COG2154@2|Bacteria,4NS9U@976|Bacteroidetes,1ITUM@117747|Sphingobacteriia 976|Bacteroidetes H PFAM Pterin 4 alpha carbinolamine dehydratase phhB - 4.2.1.96 ko:K01724 ko00790,map00790 - R04734 RC01208 ko00000,ko00001,ko01000,ko04147 - - - Pterin_4a DYD3_k127_3803363_5 700598.Niako_6433 7.051e-72 244.0 2DRKN@1|root,33C6H@2|Bacteria,4NZAT@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3803363_1 700598.Niako_6434 2.955e-252 788.0 COG0265@1|root,COG2234@1|root,COG0265@2|Bacteria,COG2234@2|Bacteria,4NFZR@976|Bacteroidetes,1ISM5@117747|Sphingobacteriia 976|Bacteroidetes O Peptidase, M28 - - - - - - - - - - - - PA,PD40,PDZ_2,Peptidase_M28 DYD3_k127_3803774_2 1267533.KB906737_gene1528 1.982e-14 79.0 COG2220@1|root,COG2220@2|Bacteria,3Y7BX@57723|Acidobacteria,2JKM4@204432|Acidobacteriia 204432|Acidobacteriia S Beta-lactamase superfamily domain - - - - - - - - - - - - Lactamase_B_3 DYD3_k127_3803774_1 755732.Fluta_3065 9.04e-69 243.0 COG1277@1|root,COG1277@2|Bacteria,4NICG@976|Bacteroidetes,1HZNH@117743|Flavobacteriia 976|Bacteroidetes S ABC-2 family transporter protein - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC2_membrane_4 DYD3_k127_3803774_0 700598.Niako_6915 1.207e-143 460.0 COG1131@1|root,COG1131@2|Bacteria,4NPDD@976|Bacteroidetes,1J1AC@117747|Sphingobacteriia 976|Bacteroidetes V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_380521_1 1185876.BN8_00877 1.59e-81 278.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47KZI@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_380521_0 743722.Sph21_1179 2.141e-106 361.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IVBV@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_3810116_2 700598.Niako_5846 1.62e-53 193.0 COG1633@1|root,COG1633@2|Bacteria,4NNYT@976|Bacteroidetes,1J0DK@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF2383) - - - - - - - - - - - - DUF2383 DYD3_k127_3810116_0 700598.Niako_5849 1.152e-152 490.0 COG3569@1|root,COG3569@2|Bacteria,4NGTF@976|Bacteroidetes,1IPJC@117747|Sphingobacteriia 976|Bacteroidetes L PFAM Eukaryotic DNA topoisomerase I, catalytic core - - 5.99.1.2 ko:K03168 - - - - ko00000,ko01000,ko03032,ko03400 - - - Topoisom_I DYD3_k127_3810116_1 700598.Niako_5850 5.73e-57 205.0 COG5478@1|root,COG5478@2|Bacteria,4NQU8@976|Bacteroidetes,1J0FM@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Low affinity iron permease - - - - - - - - - - - - Iron_permease DYD3_k127_3813124_3 700598.Niako_5716 8.679e-80 267.0 COG0060@1|root,COG0060@2|Bacteria,4NEYT@976|Bacteroidetes,1IPPT@117747|Sphingobacteriia 976|Bacteroidetes J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1 DYD3_k127_3813124_2 700598.Niako_5715 6.272e-106 351.0 COG1734@1|root,COG1734@2|Bacteria,4NNID@976|Bacteroidetes,1IS92@117747|Sphingobacteriia 976|Bacteroidetes T Molecular chaperone DnaK - - - - - - - - - - - - zf-dskA_traR DYD3_k127_3813124_0 700598.Niako_5714 0.0 1034.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,4NETS@976|Bacteroidetes,1IQ4I@117747|Sphingobacteriia 976|Bacteroidetes EU peptidase - - 3.4.14.5 ko:K01278 ko04974,map04974 - - - ko00000,ko00001,ko01000,ko01002,ko04090,ko04147 - - - DPPIV_N,Peptidase_S9 DYD3_k127_3813124_1 1267211.KI669560_gene2728 3.33e-264 824.0 COG1132@1|root,COG1132@2|Bacteria,4NE2D@976|Bacteroidetes,1IQ58@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter msbA - - ko:K06147,ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran DYD3_k127_3815680_0 700598.Niako_1987 9.962e-95 314.0 COG0859@1|root,COG0859@2|Bacteria,4PKBY@976|Bacteroidetes,1IWTZ@117747|Sphingobacteriia 976|Bacteroidetes M Glycosyltransferase family 9 (heptosyltransferase) - - - ko:K02843 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 DYD3_k127_3815680_2 867900.Celly_2256 1.855e-45 185.0 COG0475@1|root,COG0475@2|Bacteria 2|Bacteria P glutathione-regulated potassium exporter activity - - - - - - - - - - - - Na_H_Exchanger DYD3_k127_3815680_1 700598.Niako_1988 7.32e-82 276.0 COG0617@1|root,COG0617@2|Bacteria,4NF1S@976|Bacteroidetes,1IPB1@117747|Sphingobacteriia 976|Bacteroidetes J tRNA nucleotidyltransferase cca - 2.7.7.19,2.7.7.72 ko:K00970,ko:K00974 ko03013,ko03018,map03013,map03018 - R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016,ko03019 - - - HD,PolyA_pol,PolyA_pol_RNAbd DYD3_k127_3826717_1 700598.Niako_2068 1.751e-21 97.0 COG1629@1|root,COG4771@2|Bacteria,4NEIG@976|Bacteroidetes,1IVBF@117747|Sphingobacteriia 2|Bacteria P Outer membrane protein beta-barrel family - - - - - - - - - - - - CarbopepD_reg_2,OMP_b-brl_3,Plug DYD3_k127_3826717_0 929562.Emtol_2303 1.265e-134 449.0 COG0793@1|root,COG0793@2|Bacteria,4NFK4@976|Bacteroidetes,47KAN@768503|Cytophagia 976|Bacteroidetes M Belongs to the peptidase S41A family - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - DUF3340,PDZ,Peptidase_S41 DYD3_k127_3827889_10 485913.Krac_5674 6.766e-05 51.0 COG3832@1|root,COG3832@2|Bacteria 2|Bacteria J glyoxalase III activity - - - - - - - - - - - - AHSA1 DYD3_k127_3827889_2 700598.Niako_4564 1.636e-153 491.0 COG1250@1|root,COG1250@2|Bacteria,4NGU8@976|Bacteroidetes,1IP70@117747|Sphingobacteriia 976|Bacteroidetes I 3-hydroxyacyl-CoA dehydrogenase hbd - 1.1.1.157 ko:K00074 ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120 - R01976,R05576,R06941 RC00029,RC00117 ko00000,ko00001,ko01000 - - - 3HCDH,3HCDH_N DYD3_k127_3827889_6 700598.Niako_4566 6.34e-96 317.0 COG1739@1|root,COG1739@2|Bacteria,4NF0D@976|Bacteroidetes,1IQV2@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Uncharacterised protein family UPF0029, Impact, N-terminal yigZ - - - - - - - - - - - UPF0029 DYD3_k127_3827889_3 700598.Niako_4567 1.579e-114 376.0 COG0697@1|root,COG0697@2|Bacteria,4NGWA@976|Bacteroidetes,1IRVF@117747|Sphingobacteriia 976|Bacteroidetes EG Transporter - - - - - - - - - - - - EamA DYD3_k127_3827889_0 700598.Niako_4568 1.866e-159 509.0 COG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,4NFJE@976|Bacteroidetes,1IP03@117747|Sphingobacteriia 976|Bacteroidetes H Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate ribD - 1.1.1.193,3.5.4.26 ko:K11752 ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024 M00125 R03458,R03459 RC00204,RC00933 ko00000,ko00001,ko00002,ko01000 - - - RibD_C,dCMP_cyt_deam_1 DYD3_k127_3827889_5 700598.Niako_4569 1.03e-99 332.0 COG2890@1|root,COG2890@2|Bacteria,4NDZB@976|Bacteroidetes,1IRSV@117747|Sphingobacteriia 976|Bacteroidetes J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif prmC GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 ko:K02493 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03012 - - - MTS DYD3_k127_3827889_7 700598.Niako_4571 8.545e-65 224.0 COG0848@1|root,COG0848@2|Bacteria,4NNI6@976|Bacteroidetes,1IT0E@117747|Sphingobacteriia 976|Bacteroidetes U Biopolymer transport protein ExbD TolR exbD - - ko:K03559 - - - - ko00000,ko02000 1.A.30.2.1 - - ExbD DYD3_k127_3827889_4 700598.Niako_4572 4.71e-110 361.0 COG0811@1|root,COG0811@2|Bacteria,4NFIX@976|Bacteroidetes,1IQAP@117747|Sphingobacteriia 976|Bacteroidetes U PFAM MotA TolQ ExbB proton channel - - - ko:K03561 - - - - ko00000,ko02000 1.A.30.2.1 - - MotA_ExbB DYD3_k127_3827889_1 700598.Niako_4574 2.833e-159 507.0 COG0492@1|root,COG0492@2|Bacteria,4NDVS@976|Bacteroidetes,1INU1@117747|Sphingobacteriia 976|Bacteroidetes O Pyridine nucleotide-disulphide oxidoreductase ypdA - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_3 DYD3_k127_3827889_9 1356852.N008_17600 4.517e-39 153.0 COG2849@1|root,COG2849@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - MORN_2,TonB_C DYD3_k127_3827889_8 700598.Niako_4575 7.099e-41 156.0 COG2885@1|root,COG2885@2|Bacteria 2|Bacteria M chlorophyll binding - - - ko:K03286 - - - - ko00000,ko02000 1.B.6 - - Gly-zipper_Omp,OmpA,TSP_3 DYD3_k127_3827934_1 485918.Cpin_4664 2.736e-58 209.0 COG1808@1|root,COG1808@2|Bacteria,4NDXI@976|Bacteroidetes,1IPNW@117747|Sphingobacteriia 976|Bacteroidetes S membrane - - - - - - - - - - - - DUF389 DYD3_k127_3827934_0 1408473.JHXO01000013_gene605 2.375e-232 728.0 COG0388@1|root,COG0388@2|Bacteria,4NEAQ@976|Bacteroidetes,2FNGK@200643|Bacteroidia 976|Bacteroidetes S Psort location Cytoplasmic, score 8.96 ramA_2 - - - - - - - - - - - Acetyltransf_1,CN_hydrolase DYD3_k127_3834356_0 700598.Niako_4400 1.355e-124 403.0 COG1051@1|root,COG1051@2|Bacteria,4NH28@976|Bacteroidetes,1IQ9J@117747|Sphingobacteriia 976|Bacteroidetes F PFAM NUDIX hydrolase - - - - - - - - - - - - NUDIX DYD3_k127_3834356_1 760192.Halhy_1656 7.029e-124 408.0 COG0665@1|root,COG0665@2|Bacteria,4NFT6@976|Bacteroidetes,1IR0J@117747|Sphingobacteriia 976|Bacteroidetes E FAD dependent oxidoreductase - - - - - - - - - - - - DAO DYD3_k127_3834356_2 485918.Cpin_5049 9.479e-49 182.0 COG0665@1|root,COG0723@1|root,COG0665@2|Bacteria,COG0723@2|Bacteria,4NFT6@976|Bacteroidetes,1IQRJ@117747|Sphingobacteriia 976|Bacteroidetes CE PFAM FAD dependent oxidoreductase - - - - - - - - - - - - DAO,Rieske DYD3_k127_3843239_3 700598.Niako_6894 5.407e-94 310.0 COG1819@1|root,COG1819@2|Bacteria,4NFYF@976|Bacteroidetes,1IPCN@117747|Sphingobacteriia 976|Bacteroidetes CG Glycosyl transferase family 1 - - - - - - - - - - - - Glyco_trans_1_3 DYD3_k127_3843239_4 288705.RSal33209_3076 9.142e-07 56.0 COG2259@1|root,COG2259@2|Bacteria,2IQ5C@201174|Actinobacteria,1W9YU@1268|Micrococcaceae 201174|Actinobacteria S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX DYD3_k127_3843239_1 1267211.KI669560_gene1084 1.012e-161 522.0 COG5492@1|root,COG5492@2|Bacteria,4NH7Q@976|Bacteroidetes,1IQYC@117747|Sphingobacteriia 976|Bacteroidetes N domain, Protein - - - - - - - - - - - - TIG DYD3_k127_3843239_0 1267211.KI669560_gene1083 8.746e-286 905.0 COG1629@1|root,COG4771@2|Bacteria,4NEIE@976|Bacteroidetes,1IQG7@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug,TonB_dep_Rec DYD3_k127_3843239_2 700598.Niako_6888 8.864e-123 399.0 COG3746@1|root,COG3746@2|Bacteria,4NIRE@976|Bacteroidetes,1IVNH@117747|Sphingobacteriia 976|Bacteroidetes P phosphate-selective porin O and P - - - - - - - - - - - - Porin_O_P DYD3_k127_3861555_1 700598.Niako_4803 3.846e-184 586.0 COG0768@1|root,COG0772@1|root,COG0768@2|Bacteria,COG0772@2|Bacteria,4NK6S@976|Bacteroidetes,1IRIS@117747|Sphingobacteriia 976|Bacteroidetes DM Belongs to the SEDS family - - - - - - - - - - - - FTSW_RODA_SPOVE,Transpeptidase DYD3_k127_3861555_0 700598.Niako_4804 1.119e-208 665.0 COG0515@1|root,COG0515@2|Bacteria,4NWC4@976|Bacteroidetes,1IZQU@117747|Sphingobacteriia 976|Bacteroidetes KLT SMART Serine threonine-protein kinase domain - - 2.7.11.1 ko:K08884,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase DYD3_k127_3861555_2 700598.Niako_4805 4.507e-143 468.0 COG0631@1|root,COG0631@2|Bacteria,4NJRV@976|Bacteroidetes,1IRJG@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Protein phosphatase 2C - - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C,PP2C_2 DYD3_k127_3861555_3 700598.Niako_4806 6.421e-43 158.0 2C08D@1|root,2Z9UN@2|Bacteria,4NGRP@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - FHA DYD3_k127_3891250_1 760192.Halhy_2059 6.611e-265 828.0 COG4447@1|root,COG4447@2|Bacteria,4NESU@976|Bacteroidetes,1IW7V@117747|Sphingobacteriia 976|Bacteroidetes S Sortilin, neurotensin receptor 3, - - - - - - - - - - - - Sortilin-Vps10 DYD3_k127_3891250_0 714943.Mucpa_6593 5.883e-281 874.0 COG1506@1|root,COG1506@2|Bacteria,4NE2Q@976|Bacteroidetes,1IP3R@117747|Sphingobacteriia 976|Bacteroidetes E Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - - - - - - - - - - DPPIV_N,Peptidase_S9 DYD3_k127_3891575_2 700598.Niako_4907 1.163e-59 207.0 2CCP0@1|root,2Z7XN@2|Bacteria,4NPNV@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3891575_1 509635.N824_04630 3.778e-150 483.0 COG1680@1|root,COG1680@2|Bacteria,4NGXR@976|Bacteroidetes,1IR76@117747|Sphingobacteriia 976|Bacteroidetes V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD3_k127_3891575_3 543632.JOJL01000021_gene901 2.421e-10 60.0 COG2764@1|root,COG2764@2|Bacteria,2IKRR@201174|Actinobacteria,4DJ1Q@85008|Micromonosporales 201174|Actinobacteria S Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD3_k127_3891575_0 468059.AUHA01000006_gene3015 4.141e-218 685.0 COG0534@1|root,COG0534@2|Bacteria,4NDUF@976|Bacteroidetes,1IQJT@117747|Sphingobacteriia 976|Bacteroidetes V Mate efflux family protein - - - ko:K03327 - - - - ko00000,ko02000 2.A.66.1 - - MatE DYD3_k127_3900851_2 1168034.FH5T_02080 2.764e-30 138.0 COG0745@1|root,COG3292@1|root,COG5002@1|root,COG0745@2|Bacteria,COG3292@2|Bacteria,COG5002@2|Bacteria,4NGKF@976|Bacteroidetes,2FP9T@200643|Bacteroidia 976|Bacteroidetes T regulator - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_3900851_3 1288963.ADIS_4080 1.104e-24 109.0 COG3266@1|root,COG3266@2|Bacteria 2|Bacteria GM domain, Protein - - - - - - - - - - - - Collagen,Gram_pos_anchor,YadA_head DYD3_k127_3900851_0 1120966.AUBU01000023_gene3017 8.196e-95 316.0 COG1182@1|root,COG1182@2|Bacteria,4NMFK@976|Bacteroidetes,47R0C@768503|Cytophagia 976|Bacteroidetes I Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity acpD - - ko:K01118 - - - - ko00000,ko01000 - - - Flavodoxin_2 DYD3_k127_3900851_1 1218103.CIN01S_03_01660 2.37e-57 205.0 COG0664@1|root,COG0664@2|Bacteria,4NMF3@976|Bacteroidetes,1I17K@117743|Flavobacteriia,3ZQKA@59732|Chryseobacterium 976|Bacteroidetes T Cyclic nucleotide-binding domain - - - - - - - - - - - - cNMP_binding DYD3_k127_3900851_4 4432.XP_010276393.1 7.789e-06 49.0 2CBEU@1|root,2QQQU@2759|Eukaryota,37SIM@33090|Viridiplantae,3GB6Q@35493|Streptophyta 35493|Streptophyta - - - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009509,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009575,GO:0009579,GO:0009611,GO:0009628,GO:0009642,GO:0009644,GO:0009765,GO:0009941,GO:0009987,GO:0010206,GO:0010207,GO:0015979,GO:0016020,GO:0016043,GO:0019538,GO:0019684,GO:0019898,GO:0022607,GO:0030091,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0035448,GO:0042170,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0065003,GO:0071704,GO:0071840,GO:1901564 - - - - - - - - - - - DYD3_k127_3902109_0 1341181.FLJC2902T_22250 9.392e-139 443.0 COG3662@1|root,COG3662@2|Bacteria,4NEYP@976|Bacteroidetes,1HWJP@117743|Flavobacteriia,2NUUE@237|Flavobacterium 976|Bacteroidetes S Uncharacterized protein conserved in bacteria (DUF2236) - - - - - - - - - - - - DUF2236 DYD3_k127_3902109_1 700598.Niako_2173 2.491e-72 258.0 COG1629@1|root,COG3664@1|root,COG1629@2|Bacteria,COG3664@2|Bacteria,4P4MW@976|Bacteroidetes,1IP05@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD3_k127_3903330_0 880073.Calab_0779 1.607e-115 380.0 COG0733@1|root,COG0733@2|Bacteria,2NQIH@2323|unclassified Bacteria 2|Bacteria S Sodium:neurotransmitter symporter family CP_0468 - - ko:K03308,ko:K03466 - - - - ko00000,ko03036 2.A.22.4,2.A.22.5,3.A.12 - - SNF DYD3_k127_3903330_1 1121104.AQXH01000001_gene1528 9.819e-40 153.0 COG1968@1|root,COG1968@2|Bacteria,4NGIZ@976|Bacteroidetes,1IPDJ@117747|Sphingobacteriia 976|Bacteroidetes V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin uppP - 3.6.1.27 ko:K06153 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - BacA DYD3_k127_3909070_1 1223410.KN050846_gene149 1.565e-07 58.0 COG0457@1|root,COG0457@2|Bacteria,4NF0N@976|Bacteroidetes,1HWJF@117743|Flavobacteriia 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - - DYD3_k127_3909070_2 1229487.AMYW01000006_gene635 6.266e-07 59.0 COG2318@1|root,COG2318@2|Bacteria,4NGXE@976|Bacteroidetes,1HZ7A@117743|Flavobacteriia,2NUV8@237|Flavobacterium 976|Bacteroidetes S Protein of unknown function (DUF664) - - - - - - - - - - - - DUF664 DYD3_k127_3909070_0 700598.Niako_6415 2.164e-132 426.0 COG0370@1|root,COG0370@2|Bacteria,4NEII@976|Bacteroidetes,1IPAK@117747|Sphingobacteriia 976|Bacteroidetes P transporter of a GTP-driven Fe(2 ) uptake system feoB - - ko:K04759 - - - - ko00000,ko02000 9.A.8.1 - - FeoA,FeoB_C,FeoB_N,Gate DYD3_k127_3926039_1 649349.Lbys_0762 4.625e-54 200.0 COG0793@1|root,COG0793@2|Bacteria,4NJW9@976|Bacteroidetes,47VWH@768503|Cytophagia 976|Bacteroidetes M Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_3926039_0 1218108.KB908298_gene3455 2.206e-151 490.0 COG1252@1|root,COG1252@2|Bacteria,4NE0H@976|Bacteroidetes,1HXM8@117743|Flavobacteriia 976|Bacteroidetes C NADH dehydrogenase ndh - 1.6.99.3 ko:K03885 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyr_redox_2 DYD3_k127_3926039_3 700598.Niako_2074 1.193e-21 96.0 2DVQJ@1|root,32UZZ@2|Bacteria,4PGTB@976|Bacteroidetes,1IUA6@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_3926039_2 1237149.C900_05817 1.279e-51 187.0 COG0457@1|root,COG0457@2|Bacteria,4NN6J@976|Bacteroidetes,47PCR@768503|Cytophagia 976|Bacteroidetes S TPR repeat - - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_2,TPR_6,TPR_8 DYD3_k127_3933430_1 485918.Cpin_4010 1.572e-33 132.0 COG3279@1|root,COG3279@2|Bacteria,4NFN4@976|Bacteroidetes,1IWZE@117747|Sphingobacteriia 976|Bacteroidetes K COG3279 Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_3933430_0 700598.Niako_1148 9.881e-117 390.0 COG0784@1|root,COG5002@1|root,COG5278@1|root,COG0784@2|Bacteria,COG5002@2|Bacteria,COG5278@2|Bacteria,4PKV1@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - CHASE3,HATPase_c,HisKA,Hpt,PAS,PAS_4,PAS_9,Response_reg DYD3_k127_3939538_4 1123008.KB905693_gene1405 1.101e-55 198.0 COG3669@1|root,COG3669@2|Bacteria,4NEDX@976|Bacteroidetes,2FNFV@200643|Bacteroidia,22WIN@171551|Porphyromonadaceae 976|Bacteroidetes G F5 8 type C domain protein - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,CHB_HEX_C_1,F5_F8_type_C,Fn3_assoc DYD3_k127_3939538_1 1121957.ATVL01000008_gene4132 2.447e-226 710.0 COG3669@1|root,COG3669@2|Bacteria,4NE74@976|Bacteroidetes,47KFX@768503|Cytophagia 976|Bacteroidetes G PFAM Glycoside hydrolase, family 29 - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,Fucosidase_C DYD3_k127_3939538_3 485918.Cpin_1891 3.75e-101 338.0 COG2207@1|root,COG2207@2|Bacteria,4NE6T@976|Bacteroidetes,1IUXK@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - AraC_binding,Cupin_2,HTH_18 DYD3_k127_3939538_5 700598.Niako_6095 9.143e-30 123.0 COG2197@1|root,COG2197@2|Bacteria,4NKX7@976|Bacteroidetes 976|Bacteroidetes K COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_3939538_0 929562.Emtol_2210 2.629e-281 878.0 COG3533@1|root,COG3533@2|Bacteria,4NFW3@976|Bacteroidetes,47NJB@768503|Cytophagia 976|Bacteroidetes S Beta-L-arabinofuranosidase, GH127 - - - ko:K09955 - - - - ko00000 - - - Glyco_hydro_127 DYD3_k127_3939538_2 929562.Emtol_1962 7.39e-123 402.0 COG4447@1|root,COG4447@2|Bacteria,4NESU@976|Bacteroidetes,47NMF@768503|Cytophagia 976|Bacteroidetes G Sortilin, neurotensin receptor 3, - - - - - - - - - - - - BNR,BNR_6,Sortilin-Vps10 DYD3_k127_3941496_4 1267534.KB906755_gene4272 1.285e-60 221.0 COG0666@1|root,COG0666@2|Bacteria 2|Bacteria G response to abiotic stimulus - - - ko:K03086 - - - - ko00000,ko03021 - - - AAA_19,Ank,Ank_2,Ank_3,Ank_4,Ank_5,Sigma70_r2,Sigma70_r4,Viral_helicase1 DYD3_k127_3941496_1 1267534.KB906755_gene4272 1.457e-76 271.0 COG0666@1|root,COG0666@2|Bacteria 2|Bacteria G response to abiotic stimulus - - - ko:K03086 - - - - ko00000,ko03021 - - - AAA_19,Ank,Ank_2,Ank_3,Ank_4,Ank_5,Sigma70_r2,Sigma70_r4,Viral_helicase1 DYD3_k127_3941496_3 929703.KE386491_gene1356 1.735e-67 237.0 COG0666@1|root,COG0666@2|Bacteria,4P2SK@976|Bacteroidetes 976|Bacteroidetes S Ankyrin repeat - - - - - - - - - - - - - DYD3_k127_3941496_2 1519464.HY22_01950 2.042e-68 256.0 COG1132@1|root,COG1132@2|Bacteria 2|Bacteria V (ABC) transporter - - - ko:K06147,ko:K06148 - - - - ko00000,ko02000 3.A.1,3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran DYD3_k127_3941496_0 234267.Acid_4826 1.015e-144 473.0 COG4886@1|root,COG4886@2|Bacteria 2|Bacteria S regulation of response to stimulus - - - - - - - - - - - - - DYD3_k127_3941496_5 234267.Acid_4826 5.986e-16 85.0 COG4886@1|root,COG4886@2|Bacteria 2|Bacteria S regulation of response to stimulus - - - - - - - - - - - - - DYD3_k127_3941496_6 91464.S7335_1063 1.045e-08 59.0 COG1247@1|root,COG1247@2|Bacteria,1G5X1@1117|Cyanobacteria 1117|Cyanobacteria M Acetyltransferase, gnat family - - - - - - - - - - - - Acetyltransf_1,FR47 DYD3_k127_397199_3 700598.Niako_4359 2.847e-56 199.0 2C8XG@1|root,2Z7PK@2|Bacteria,4NEU8@976|Bacteroidetes,1IQC4@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF4197) - - - - - - - - - - - - DUF4197 DYD3_k127_397199_0 700598.Niako_4360 2.835e-68 234.0 COG0824@1|root,COG0824@2|Bacteria,4NS45@976|Bacteroidetes,1J14C@117747|Sphingobacteriia 976|Bacteroidetes S Thioesterase-like superfamily - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT_2 DYD3_k127_397199_1 700598.Niako_4361 1.69e-60 218.0 COG0526@1|root,COG0526@2|Bacteria,4NQI3@976|Bacteroidetes,1ITTM@117747|Sphingobacteriia 976|Bacteroidetes CO thiol-disulfide isomerase and thioredoxins - - - - - - - - - - - - Thioredoxin,Thioredoxin_9 DYD3_k127_397199_2 700598.Niako_4362 9.084e-57 204.0 COG0545@1|root,COG0545@2|Bacteria,4NDW4@976|Bacteroidetes,1J09J@117747|Sphingobacteriia 976|Bacteroidetes O Domain amino terminal to FKBP-type peptidyl-prolyl isomerase - - 5.2.1.8 ko:K03772,ko:K03773 - - - - ko00000,ko01000,ko03110 - - - FKBP_C,FKBP_N DYD3_k127_3999334_1 700598.Niako_0900 3.284e-104 342.0 COG4372@1|root,COG4372@2|Bacteria,4NTCH@976|Bacteroidetes,1J0SD@117747|Sphingobacteriia 976|Bacteroidetes S Transposase - - - - - - - - - - - - - DYD3_k127_3999334_0 700598.Niako_0902 2.341e-180 568.0 COG1466@1|root,COG1466@2|Bacteria,4NEIB@976|Bacteroidetes,1IQ3N@117747|Sphingobacteriia 976|Bacteroidetes L DNA polymerase III delta subunit holA - 2.7.7.7 ko:K02340 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta DYD3_k127_3999334_2 700598.Niako_0903 6.118e-80 273.0 COG0196@1|root,COG0196@2|Bacteria,4NEI9@976|Bacteroidetes,1IQGU@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the ribF family ribF - 2.7.1.26,2.7.7.2 ko:K11753 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00161,R00549 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - FAD_syn,Flavokinase DYD3_k127_3999334_3 1033802.SSPSH_001182 8.79e-05 45.0 COG3687@1|root,COG3687@2|Bacteria,1MWGV@1224|Proteobacteria,1RZKP@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Metal-dependent hydrolase - - - ko:K07044 - - - - ko00000 - - - Metal_hydrol DYD3_k127_4011482_1 700598.Niako_5516 5.256e-75 254.0 COG0454@1|root,COG0456@2|Bacteria,4NFWE@976|Bacteroidetes,1INYT@117747|Sphingobacteriia 976|Bacteroidetes K Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - - DYD3_k127_4011482_0 700598.Niako_5515 9.721e-300 922.0 COG0055@1|root,COG0055@2|Bacteria,4NF1Q@976|Bacteroidetes,1IPG7@117747|Sphingobacteriia 976|Bacteroidetes C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits atpD - 3.6.3.14 ko:K02112 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_N DYD3_k127_4011482_3 700598.Niako_5514 2.564e-33 131.0 COG0355@1|root,COG0355@2|Bacteria,4NUYG@976|Bacteroidetes,1ITVV@117747|Sphingobacteriia 976|Bacteroidetes C ATP synthase atpC - - ko:K02114 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_DE_N DYD3_k127_4011482_5 1121904.ARBP01000016_gene5260 5.576e-06 58.0 COG2931@1|root,COG3291@1|root,COG2931@2|Bacteria,COG3291@2|Bacteria 2|Bacteria S metallopeptidase activity - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - CHU_C,Laminin_G_3,PKD DYD3_k127_4011482_2 485918.Cpin_3714 6.55e-43 172.0 COG4099@1|root,COG4932@1|root,COG4099@2|Bacteria,COG4932@2|Bacteria,4NP7H@976|Bacteroidetes 976|Bacteroidetes M Fibronectin type 3 domain - - - - - - - - - - - - - DYD3_k127_4020711_3 391596.PBAL39_00025 2.545e-43 173.0 COG3209@1|root,COG5295@1|root,COG3209@2|Bacteria,COG5295@2|Bacteria,4PHVV@976|Bacteroidetes,1IYKZ@117747|Sphingobacteriia 976|Bacteroidetes UW tail collar domain protein - - - - - - - - - - - - - DYD3_k127_4020711_4 700598.Niako_0934 1.439e-41 157.0 2EQRC@1|root,33IB7@2|Bacteria,4NZAZ@976|Bacteroidetes,1IYUB@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4020711_1 1185876.BN8_01705 1.528e-116 379.0 COG0024@1|root,COG0024@2|Bacteria,4NEAT@976|Bacteroidetes,47KJV@768503|Cytophagia 976|Bacteroidetes E TIGRFAM methionine aminopeptidase, type I - - 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 DYD3_k127_4020711_0 700598.Niako_0923 4.648e-159 507.0 COG1193@1|root,COG1193@2|Bacteria,4NNNV@976|Bacteroidetes,1IP9N@117747|Sphingobacteriia 976|Bacteroidetes L Smr domain - - - - - - - - - - - - DUF2027,Smr DYD3_k127_4020711_2 485918.Cpin_3674 1.168e-99 331.0 COG0531@1|root,COG0531@2|Bacteria,4NDU2@976|Bacteroidetes,1IPFZ@117747|Sphingobacteriia 976|Bacteroidetes E amino acid - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2,AA_permease_C DYD3_k127_402710_3 700598.Niako_5784 2.871e-24 102.0 COG0726@1|root,COG0726@2|Bacteria,4NF79@976|Bacteroidetes,1IS1E@117747|Sphingobacteriia 976|Bacteroidetes G polysaccharide deacetylase - - - - - - - - - - - - - DYD3_k127_402710_2 700598.Niako_5983 1.534e-58 219.0 2DQ1K@1|root,334D1@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_402710_0 925409.KI911562_gene1108 5.399e-241 755.0 COG0138@1|root,COG0138@2|Bacteria,4NEZD@976|Bacteroidetes,1IP42@117747|Sphingobacteriia 976|Bacteroidetes F Bifunctional purine biosynthesis protein PurH purH - 2.1.2.3,3.5.4.10 ko:K00602 ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523 M00048 R01127,R04560 RC00026,RC00263,RC00456 ko00000,ko00001,ko00002,ko01000,ko04147 - - - AICARFT_IMPCHas,MGS DYD3_k127_402710_1 700598.Niako_5782 2.206e-68 241.0 COG0658@1|root,COG0658@2|Bacteria,4NEJH@976|Bacteroidetes,1IQH4@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM ComEC Rec2-related protein comEC - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Competence,DUF4131 DYD3_k127_403015_0 485918.Cpin_4052 2.908e-91 306.0 COG0382@1|root,COG0382@2|Bacteria,4NIRK@976|Bacteroidetes,1ISIW@117747|Sphingobacteriia 976|Bacteroidetes H UbiA prenyltransferase family - - - - - - - - - - - - UbiA DYD3_k127_403015_1 1237149.C900_02530 6.929e-75 257.0 COG4424@1|root,COG4424@2|Bacteria,4NKZ1@976|Bacteroidetes,47W0X@768503|Cytophagia 976|Bacteroidetes S Sulfotransferase domain - - - - - - - - - - - - Sulfotransfer_1,Sulfotransfer_3 DYD3_k127_4036377_2 1506583.JQJY01000001_gene319 2.449e-31 125.0 COG0526@1|root,COG0526@2|Bacteria,4NPJ9@976|Bacteroidetes,1ICU2@117743|Flavobacteriia,2NUT1@237|Flavobacterium 976|Bacteroidetes CO AhpC/TSA family - - - - - - - - - - - - AhpC-TSA,Thioredoxin_2 DYD3_k127_4036377_0 929703.KE386491_gene1938 3.566e-215 674.0 COG0673@1|root,COG0673@2|Bacteria,4NDYI@976|Bacteroidetes,47NPG@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_4043229_1 1123277.KB893195_gene5691 6.648e-26 109.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NE2@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4043229_0 1122621.ATZA01000091_gene2347 2.44e-152 492.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ0T@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4046295_1 1123057.P872_23365 1.037e-12 72.0 COG0793@1|root,COG0793@2|Bacteria,4NDWU@976|Bacteroidetes,47JTG@768503|Cytophagia 976|Bacteroidetes M Belongs to the peptidase S41A family prc - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 DYD3_k127_4046295_0 1408473.JHXO01000009_gene3462 8.284e-85 290.0 COG3394@1|root,COG3394@2|Bacteria,4PNAT@976|Bacteroidetes,2G14M@200643|Bacteroidia 976|Bacteroidetes G YdjC-like protein - - 3.5.1.105 ko:K03478 - - - - ko00000,ko01000 - - - YdjC DYD3_k127_4056404_4 504472.Slin_2789 0.0005491 44.0 COG0526@1|root,COG0526@2|Bacteria,4NTVK@976|Bacteroidetes,47VBE@768503|Cytophagia 976|Bacteroidetes O alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - Redoxin DYD3_k127_4056404_0 700598.Niako_0991 6.385e-291 898.0 COG1884@1|root,COG1884@2|Bacteria,4PN0H@976|Bacteroidetes,1IPCT@117747|Sphingobacteriia 976|Bacteroidetes I Methylmalonyl-CoA mutase - - 5.4.99.2 ko:K01848 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00375,M00376,M00741 R00833 RC00395 ko00000,ko00001,ko00002,ko01000 - - - MM_CoA_mutase DYD3_k127_4056404_2 700598.Niako_0992 2.298e-68 236.0 28NWP@1|root,2ZBUH@2|Bacteria,4NNPT@976|Bacteroidetes,1IT0Y@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4056404_1 1123508.JH636442_gene3806 5.791e-75 258.0 COG4912@1|root,COG4912@2|Bacteria,2IZ0C@203682|Planctomycetes 203682|Planctomycetes L DNA alkylation repair enzyme - - - - - - - - - - - - DNA_alkylation DYD3_k127_4056404_3 1121895.Q765_10750 1.102e-05 51.0 2CB8S@1|root,30PE6@2|Bacteria,4NU1E@976|Bacteroidetes,1II6M@117743|Flavobacteriia,2P0B4@237|Flavobacterium 976|Bacteroidetes S Protein of unknown function (DUF4199) - - - - - - - - - - - - DUF4199 DYD3_k127_4066928_3 391596.PBAL39_00075 1.232e-06 50.0 COG3712@1|root,COG3712@2|Bacteria,4NE6N@976|Bacteroidetes,1IPV8@117747|Sphingobacteriia 976|Bacteroidetes PT COG3712 Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_4066928_1 485917.Phep_2854 9.025e-143 475.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1J0GE@117747|Sphingobacteriia 976|Bacteroidetes P TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_4066928_0 391596.PBAL39_20304 5.35e-166 538.0 COG1629@1|root,COG1629@2|Bacteria,4NJST@976|Bacteroidetes,1IRER@117747|Sphingobacteriia 2|Bacteria P Probably involved in nutrient binding - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN DYD3_k127_4066928_2 391596.PBAL39_20189 1.615e-09 66.0 COG3193@1|root,COG3193@2|Bacteria,4NHF6@976|Bacteroidetes,1IQ7D@117747|Sphingobacteriia 976|Bacteroidetes S Pfam:SusD - - - - - - - - - - - - SusD-like_3,SusD_RagB DYD3_k127_4070009_5 1121875.KB907547_gene3379 2.955e-41 158.0 COG2311@1|root,COG2311@2|Bacteria,4NG01@976|Bacteroidetes,1HZVC@117743|Flavobacteriia 976|Bacteroidetes S Protein of unknown function (DUF418) - - - ko:K07148 - - - - ko00000 - - - DUF418 DYD3_k127_4070009_3 1089547.KB913013_gene4097 9.17e-44 164.0 COG0454@1|root,COG0456@2|Bacteria,4NURB@976|Bacteroidetes,47SEW@768503|Cytophagia 976|Bacteroidetes K DinB superfamily - - - - - - - - - - - - DinB_2 DYD3_k127_4070009_0 700598.Niako_7050 6.936e-220 686.0 COG0183@1|root,COG0183@2|Bacteria,4NE3Q@976|Bacteroidetes,1IVK0@117747|Sphingobacteriia 976|Bacteroidetes I Belongs to the thiolase family - - 2.3.1.174,2.3.1.9 ko:K00626,ko:K07823 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R00829,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N DYD3_k127_4070009_2 1267534.KB906761_gene1211 7.86e-87 304.0 COG1228@1|root,COG1228@2|Bacteria,3Y4IP@57723|Acidobacteria,2JMQC@204432|Acidobacteriia 204432|Acidobacteriia Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD3_k127_4070009_1 700598.Niako_7047 2.613e-186 587.0 COG0820@1|root,COG0820@2|Bacteria,4NFH5@976|Bacteroidetes,1IQMY@117747|Sphingobacteriia 976|Bacteroidetes J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs rlmN GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 ko:K06941 - - - - ko00000,ko01000,ko03009 - - - Fer4_14,Radical_SAM DYD3_k127_4070009_4 700598.Niako_7046 1.759e-42 162.0 COG3678@1|root,COG3678@2|Bacteria,4NYJD@976|Bacteroidetes 976|Bacteroidetes NPTU ATP-independent chaperone mediated protein folding - - - - - - - - - - - - - DYD3_k127_4071247_0 485918.Cpin_4051 5.968e-203 638.0 COG0277@1|root,COG0277@2|Bacteria,4NGC5@976|Bacteroidetes,1IWKU@117747|Sphingobacteriia 976|Bacteroidetes C FAD binding domain - - - - - - - - - - - - FAD_binding_4 DYD3_k127_4071247_1 485918.Cpin_4050 6.33e-101 333.0 COG0300@1|root,COG0300@2|Bacteria,4NIGI@976|Bacteroidetes,1IXEW@117747|Sphingobacteriia 976|Bacteroidetes S Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short DYD3_k127_4071247_2 1121904.ARBP01000018_gene2694 8.56e-61 216.0 COG0560@1|root,COG0560@2|Bacteria,4NRRM@976|Bacteroidetes,47VIZ@768503|Cytophagia 976|Bacteroidetes E haloacid dehalogenase-like hydrolase - - - - - - - - - - - - GtrA,HAD DYD3_k127_4071247_3 1492737.FEM08_04410 1.187e-55 197.0 COG1680@1|root,COG1680@2|Bacteria,4NHRA@976|Bacteroidetes,1HYSZ@117743|Flavobacteriia,2NSWM@237|Flavobacterium 976|Bacteroidetes V Domain of unknown function (DUF4440) - - - - - - - - - - - - Beta-lactamase,DUF4440 DYD3_k127_4087780_3 929713.NIASO_05035 1.745e-83 281.0 COG2197@1|root,COG2197@2|Bacteria,4NMTW@976|Bacteroidetes,1IVY0@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg DYD3_k127_4087780_1 485917.Phep_2111 5.384e-153 505.0 COG0457@1|root,COG4585@1|root,COG0457@2|Bacteria,COG4585@2|Bacteria,4NI65@976|Bacteroidetes,1INUH@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_12,TPR_8 DYD3_k127_4087780_4 1122605.KB893645_gene1184 6.006e-64 222.0 COG4682@1|root,COG4682@2|Bacteria,4NPA4@976|Bacteroidetes 976|Bacteroidetes S two helix domain yiaA - - - - - - - - - - - YiaAB DYD3_k127_4087780_0 445961.IW15_07640 2.306e-201 638.0 COG3386@1|root,COG3386@2|Bacteria,4NHFU@976|Bacteroidetes,1I78M@117743|Flavobacteriia,3ZPZM@59732|Chryseobacterium 976|Bacteroidetes G Domain of unknown function (DUF4394) - - - - - - - - - - - - DUF4394 DYD3_k127_4087780_2 700598.Niako_4260 3.688e-103 341.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,4NKPZ@976|Bacteroidetes,1IY7P@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG4995 conserved - - - - - - - - - - - - CHAT DYD3_k127_4094046_2 700598.Niako_0949 4.312e-21 93.0 COG0842@1|root,COG0842@2|Bacteria,4NKB0@976|Bacteroidetes,1IQSZ@117747|Sphingobacteriia 976|Bacteroidetes V transport, permease protein - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane,ABC2_membrane_3 DYD3_k127_4094046_0 700598.Niako_0951 3.377e-64 223.0 COG0457@1|root,COG0457@2|Bacteria,4NQR8@976|Bacteroidetes,1ISBH@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2911) - - - - - - - - - - - - DUF2911 DYD3_k127_4094046_3 485918.Cpin_5704 2.066e-19 94.0 2CJXE@1|root,33FYQ@2|Bacteria,4NYT2@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_410149_2 1134474.O59_001270 5.93e-47 173.0 COG1295@1|root,COG1295@2|Bacteria,1R9UY@1224|Proteobacteria,1S11F@1236|Gammaproteobacteria,1FI1D@10|Cellvibrio 1236|Gammaproteobacteria S Virulence factor BrkB - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB DYD3_k127_410149_0 760192.Halhy_3701 8.785e-249 773.0 COG4948@1|root,COG4948@2|Bacteria,4NE9A@976|Bacteroidetes,1IPDK@117747|Sphingobacteriia 976|Bacteroidetes M Mandelate racemase muconate lactonizing enzyme, N-terminal - - - - - - - - - - - - MR_MLE_C,MR_MLE_N DYD3_k127_4106218_0 760192.Halhy_4968 1.344e-128 425.0 COG0457@1|root,COG1680@1|root,COG0457@2|Bacteria,COG1680@2|Bacteria,4NGKK@976|Bacteroidetes,1IRV5@117747|Sphingobacteriia 976|Bacteroidetes V COG1680 Beta-lactamase class C and other penicillin binding - - - - - - - - - - - - Beta-lactamase,DUF3471,TPR_2 DYD3_k127_4106218_2 991.IW20_17950 7.524e-97 326.0 COG3292@1|root,COG3292@2|Bacteria,4NI2T@976|Bacteroidetes,1I1KX@117743|Flavobacteriia,2NWM3@237|Flavobacterium 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - Reg_prop,YceI DYD3_k127_4106218_1 1123276.KB893245_gene1607 1.279e-117 384.0 COG1262@1|root,COG1262@2|Bacteria,4NEUZ@976|Bacteroidetes,47QN7@768503|Cytophagia 976|Bacteroidetes S Sulfatase-modifying factor enzyme 1 - - - - - - - - - - - - FGE-sulfatase,Peptidase_C14 DYD3_k127_4106218_3 1229276.DI53_0181 1.643e-28 118.0 2EB0Y@1|root,3351U@2|Bacteria,4NX8Q@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4106218_4 714943.Mucpa_2790 3.026e-12 70.0 COG0789@1|root,COG0789@2|Bacteria,4PMGJ@976|Bacteroidetes 976|Bacteroidetes K Helix-turn-helix domain - - - - - - - - - - - - HTH_17 DYD3_k127_4113978_0 153721.MYP_1896 2.513e-23 111.0 28MCN@1|root,2ZAQR@2|Bacteria,4NQ4Q@976|Bacteroidetes,47RXA@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4113978_1 1237149.C900_05526 6.298e-23 112.0 2B31B@1|root,30VE8@2|Bacteria,4PC7Y@976|Bacteroidetes,47WXZ@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4119841_2 1267211.KI669560_gene2369 2.192e-125 404.0 COG0334@1|root,COG0334@2|Bacteria,4NEBH@976|Bacteroidetes,1IPRA@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the Glu Leu Phe Val dehydrogenases family gdhA - 1.4.1.3 ko:K00261 ko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964 M00740 R00243,R00248 RC00006,RC02799 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ELFV_dehydrog,ELFV_dehydrog_N DYD3_k127_4119841_6 700598.Niako_0943 7.872e-12 72.0 2E8P3@1|root,3291P@2|Bacteria,4PJ3Y@976|Bacteroidetes,1IZGG@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4119841_0 1121875.KB907549_gene2017 1.159e-168 541.0 COG1914@1|root,COG1914@2|Bacteria 2|Bacteria P metal ion transmembrane transporter activity - - - - - - - - - - - - Nramp DYD3_k127_4119841_3 700598.Niako_5037 1.764e-64 223.0 COG4748@1|root,COG4748@2|Bacteria,4PN76@976|Bacteroidetes,1J0M4@117747|Sphingobacteriia 976|Bacteroidetes S Type I restriction enzyme R protein N terminus (HSDR_N) - - - - - - - - - - - - HSDR_N_2 DYD3_k127_4119841_1 700598.Niako_5038 2.448e-152 483.0 COG2820@1|root,COG2820@2|Bacteria,4NESQ@976|Bacteroidetes,1IP9I@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile amn - 3.2.2.4 ko:K01241 ko00230,map00230 - R00182 RC00063,RC00318 ko00000,ko00001,ko01000 - - - PNP_UDP_1 DYD3_k127_4119841_4 700598.Niako_3922 5.483e-50 181.0 COG3437@1|root,COG3437@2|Bacteria 2|Bacteria T response regulator, receiver - - - - - - - - - - - - HATPase_c,HD,HD_5,HisKA,Response_reg DYD3_k127_4119841_5 755732.Fluta_1630 2.218e-14 86.0 COG3210@1|root,COG5184@1|root,COG3210@2|Bacteria,COG5184@2|Bacteria,4NIDX@976|Bacteroidetes,1I0AY@117743|Flavobacteriia,2PBAP@246874|Cryomorphaceae 976|Bacteroidetes U Concanavalin A-like lectin/glucanases superfamily - - - - - - - - - - - - Laminin_G_3 DYD3_k127_4119841_7 746697.Aeqsu_0746 3.314e-06 59.0 COG2304@1|root,COG4935@1|root,COG2304@2|Bacteria,COG4935@2|Bacteria,4PNHY@976|Bacteroidetes,1IK6M@117743|Flavobacteriia 976|Bacteroidetes O C-terminal domain of CHU protein family - - - - - - - - - - - - CHU_C DYD3_k127_4120243_1 700598.Niako_5813 4.185e-163 517.0 COG4198@1|root,COG4198@2|Bacteria,4NGQH@976|Bacteroidetes,1IRVU@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1015) - - - - - - - - - - - - DUF1015 DYD3_k127_4120243_2 700598.Niako_5814 1.03e-152 489.0 COG0457@1|root,COG0457@2|Bacteria,4NME3@976|Bacteroidetes 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_19 DYD3_k127_4120243_0 700598.Niako_5815 5.676e-255 792.0 COG1022@1|root,COG1022@2|Bacteria,4NEA4@976|Bacteroidetes,1IQD6@117747|Sphingobacteriia 976|Bacteroidetes I AMP-dependent synthetase fadD - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding DYD3_k127_4123854_3 700598.Niako_3008 4.836e-14 73.0 COG2339@1|root,COG2339@2|Bacteria,4NGUS@976|Bacteroidetes,1IXTR@117747|Sphingobacteriia 976|Bacteroidetes S Protease prsW family - - - - - - - - - - - - PrsW-protease DYD3_k127_4123854_1 700598.Niako_3009 1.537e-52 190.0 COG0454@1|root,COG0456@2|Bacteria,4NQVT@976|Bacteroidetes,1ISRI@117747|Sphingobacteriia 976|Bacteroidetes K Acetyltransferase (GNAT) domain paiA - - - - - - - - - - - Acetyltransf_1,Acetyltransf_10 DYD3_k127_4123854_0 945713.IALB_1798 2.841e-75 261.0 COG1738@1|root,COG1738@2|Bacteria 2|Bacteria S queuosine salvage CP_0807 - - ko:K09125 - - - - ko00000 - - - Vut_1 DYD3_k127_4123854_4 386456.JQKN01000002_gene2542 1.612e-06 50.0 COG1243@1|root,arCOG01361@2157|Archaea,2XT9Z@28890|Euryarchaeota,23NXB@183925|Methanobacteria 183925|Methanobacteria K histone acetyltransferase - - 2.3.1.48 ko:K07739 - - - - ko00000,ko01000,ko03016,ko03036 - - - Acetyltransf_1,Radical_SAM,Radical_SAM_C DYD3_k127_414145_3 1454007.JAUG01000082_gene4556 1.234e-78 267.0 COG0500@1|root,COG2226@2|Bacteria,4NIN6@976|Bacteroidetes,1IYEB@117747|Sphingobacteriia 976|Bacteroidetes Q Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - - - - - - - - - - Methyltransf_25,Ubie_methyltran DYD3_k127_414145_1 929556.Solca_3839 7.964e-96 324.0 COG2114@1|root,COG2207@1|root,COG2114@2|Bacteria,COG2207@2|Bacteria,4NFVC@976|Bacteroidetes,1IXZX@117747|Sphingobacteriia 976|Bacteroidetes K Protein of unknown function (DUF4242) - - - - - - - - - - - - DUF4242,HTH_18 DYD3_k127_414145_2 1123057.P872_09935 2.178e-79 273.0 COG0008@1|root,COG0008@2|Bacteria,4NP0Y@976|Bacteroidetes,47Q0Q@768503|Cytophagia 976|Bacteroidetes J Belongs to the class-I aminoacyl-tRNA synthetase family - - 6.1.1.17 ko:K01885 ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120 M00121,M00359,M00360 R05578 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016 - - - tRNA-synt_1c DYD3_k127_414145_4 398512.JQKC01000010_gene46 5.92e-77 270.0 COG0596@1|root,COG0596@2|Bacteria,1UHTA@1239|Firmicutes,25EE8@186801|Clostridia,3WPJZ@541000|Ruminococcaceae 186801|Clostridia S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_1,Hydrolase_4 DYD3_k127_414145_0 761193.Runsl_1742 1.012e-101 341.0 COG1735@1|root,COG1735@2|Bacteria,4NJYF@976|Bacteroidetes,47NZQ@768503|Cytophagia 976|Bacteroidetes S Phosphotriesterase family php - - ko:K07048 - - - - ko00000 - - - PTE DYD3_k127_414145_5 1317122.ATO12_19985 9.55e-21 96.0 2EQG1@1|root,3309R@2|Bacteria,4NV48@976|Bacteroidetes,1IAJ6@117743|Flavobacteriia,2YKQW@290174|Aquimarina 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_414145_6 746697.Aeqsu_3163 3.905e-12 72.0 2DSIQ@1|root,33GBV@2|Bacteria,4NXGY@976|Bacteroidetes,1IAZV@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4143408_2 700598.Niako_1143 3.584e-129 415.0 COG1475@1|root,COG1475@2|Bacteria,4NFZ9@976|Bacteroidetes,1IPCV@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the ParB family parB - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc DYD3_k127_4143408_1 700598.Niako_1144 2.1e-148 472.0 COG1192@1|root,COG1192@2|Bacteria,4NFEX@976|Bacteroidetes,1IQ5V@117747|Sphingobacteriia 976|Bacteroidetes D CobQ CobB MinD ParA nucleotide binding domain soj - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 DYD3_k127_4143408_3 700598.Niako_1145 2.767e-111 364.0 COG2220@1|root,COG2220@2|Bacteria,4NGD5@976|Bacteroidetes,1IRXP@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the UPF0173 family - - - - - - - - - - - - Lactamase_B_2,Lactamase_B_3 DYD3_k127_4143408_4 700598.Niako_1146 7.266e-73 249.0 COG0431@1|root,COG0431@2|Bacteria,4NQV9@976|Bacteroidetes,1IRZM@117747|Sphingobacteriia 976|Bacteroidetes S NADPH-dependent FMN reductase - - - - - - - - - - - - FMN_red DYD3_k127_4143408_0 700598.Niako_1147 3.172e-193 610.0 COG1408@1|root,COG1408@2|Bacteria,4NFCH@976|Bacteroidetes,1IPSC@117747|Sphingobacteriia 976|Bacteroidetes S DNA mismatch repair protein MutT - - - ko:K07098 - - - - ko00000 - - - Metallophos DYD3_k127_4159570_0 485918.Cpin_6777 9.526e-160 515.0 COG1680@1|root,COG1680@2|Bacteria,4NI1Z@976|Bacteroidetes,1IT3V@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase,DUF3471,SusF_SusE,TPR_2 DYD3_k127_4159570_4 706587.Desti_1580 5.7e-39 150.0 COG1720@1|root,COG1720@2|Bacteria,1MYVG@1224|Proteobacteria,42N6M@68525|delta/epsilon subdivisions,2WPY9@28221|Deltaproteobacteria,2MS40@213462|Syntrophobacterales 28221|Deltaproteobacteria S Uncharacterised protein family UPF0066 - - 4.1.2.17 ko:K01628 ko00051,ko01120,map00051,map01120 - R02262 RC00603,RC00604 ko00000,ko00001,ko01000 - - - Aldolase_II,UPF0066 DYD3_k127_4159570_2 485913.Krac_0746 2.527e-97 325.0 COG1028@1|root,COG1028@2|Bacteria 485913.Krac_0746|- IQ oxidoreductase activity, acting on CH-OH group of donors - - - - - - - - - - - - - DYD3_k127_4159570_3 700598.Niako_4074 1.729e-39 150.0 COG0346@1|root,COG0346@2|Bacteria,4P53A@976|Bacteroidetes 976|Bacteroidetes E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase DYD3_k127_4159570_1 700598.Niako_1194 2.722e-98 328.0 COG3315@1|root,COG3315@2|Bacteria 2|Bacteria Q Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - - - - - - - - - - LCM DYD3_k127_4159570_5 700598.Niako_1855 0.0006524 42.0 COG1309@1|root,COG1309@2|Bacteria,4NM8G@976|Bacteroidetes,1ITU2@117747|Sphingobacteriia 976|Bacteroidetes K regulator, TetR-like, DNA-binding, bacterial archaeal - - - - - - - - - - - - TetR_C_13,TetR_N DYD3_k127_4160311_5 700598.Niako_5870 6.069e-30 119.0 COG2080@1|root,COG2080@2|Bacteria,4NRVN@976|Bacteroidetes,1IY38@117747|Sphingobacteriia 976|Bacteroidetes C [2Fe-2S] binding domain - - 1.17.2.1 ko:K18029 ko00760,ko01120,map00760,map01120 M00622 R09473 RC00589 ko00000,ko00001,ko00002,ko01000 - - - Fer2,Fer2_2 DYD3_k127_4160311_6 1121481.AUAS01000008_gene3072 9.579e-29 125.0 2E4RS@1|root,32ZKA@2|Bacteria,4NVN5@976|Bacteroidetes,47RDU@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4160311_0 700598.Niako_6793 0.0 1309.0 COG1629@1|root,COG4771@2|Bacteria,4NF4B@976|Bacteroidetes,1IPMB@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_4160311_3 929713.NIASO_14660 1.151e-82 288.0 28I8D@1|root,2Z8B7@2|Bacteria,4NM23@976|Bacteroidetes,1ISNF@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4249) - - - - - - - - - - - - DUF4249 DYD3_k127_4160311_2 700598.Niako_6792 7.79e-96 326.0 28I8D@1|root,2Z8B7@2|Bacteria,4NM23@976|Bacteroidetes,1ISNF@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4249) - - - - - - - - - - - - DUF4249 DYD3_k127_4160311_1 700598.Niako_6792 1.716e-99 336.0 28I8D@1|root,2Z8B7@2|Bacteria,4NM23@976|Bacteroidetes,1ISNF@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4249) - - - - - - - - - - - - DUF4249 DYD3_k127_4160311_4 700598.Niako_6791 1.666e-78 269.0 COG2373@1|root,COG2373@2|Bacteria,4NGYZ@976|Bacteroidetes,1IQTB@117747|Sphingobacteriia 976|Bacteroidetes S Large extracellular alpha-helical protein - - - - - - - - - - - - - DYD3_k127_4176984_3 1237149.C900_00939 4.824e-08 56.0 2CUMY@1|root,32SVM@2|Bacteria,4NTF0@976|Bacteroidetes,47RDV@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 DYD3_k127_4176984_2 1280380.KR100_10150 4.857e-33 135.0 COG0457@1|root,COG0457@2|Bacteria,1G4J0@1117|Cyanobacteria,1H45D@1129|Synechococcus 1117|Cyanobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_11,TPR_8,Trypsin_2 DYD3_k127_4176984_0 700598.Niako_2039 2.378e-79 272.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes,1IXPB@117747|Sphingobacteriia 976|Bacteroidetes T LytTr DNA-binding domain - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_4176984_1 1185876.BN8_05808 2.615e-37 145.0 COG2972@1|root,COG2972@2|Bacteria,4NF45@976|Bacteroidetes,47QDQ@768503|Cytophagia 976|Bacteroidetes T signal transduction protein with a C-terminal ATPase domain - - - - - - - - - - - - 7TMR-DISMED2,7TMR-DISM_7TM,His_kinase,TPR_10,TPR_12,TPR_7,TPR_8 DYD3_k127_4199265_0 153721.MYP_3974 3.747e-105 344.0 COG3546@1|root,COG3546@2|Bacteria,4NHIN@976|Bacteroidetes,47P5K@768503|Cytophagia 976|Bacteroidetes P Manganese containing catalase - - - - - - - - - - - - Mn_catalase DYD3_k127_4199265_3 504472.Slin_3511 5.564e-39 148.0 COG3631@1|root,COG3631@2|Bacteria,4PMPQ@976|Bacteroidetes,47YAE@768503|Cytophagia 976|Bacteroidetes S SnoaL-like domain - - - - - - - - - - - - SnoaL_2 DYD3_k127_4199265_1 509635.N824_23390 2.279e-64 226.0 COG3468@1|root,COG3468@2|Bacteria,4NU7E@976|Bacteroidetes,1ITD8@117747|Sphingobacteriia 976|Bacteroidetes MU COG NOG29365 non supervised orthologous group - - - - - - - - - - - - OMP_b-brl DYD3_k127_4199265_2 1237149.C900_01755 7.749e-54 204.0 COG2169@1|root,COG2169@2|Bacteria 2|Bacteria K sequence-specific DNA binding melR GO:0001047,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 3.1.31.1,3.2.2.21 ko:K01174,ko:K03490,ko:K13529,ko:K15051 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03000,ko03400 - - - Ada_Zn_binding,Cupin_2,HTH_18,HTH_AraC DYD3_k127_4199265_4 1237149.C900_01756 6.548e-20 91.0 COG3832@1|root,COG3832@2|Bacteria,4NPKI@976|Bacteroidetes,47UX1@768503|Cytophagia 976|Bacteroidetes S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_4201242_0 1506583.JQJY01000003_gene3676 3.33e-52 190.0 COG0438@1|root,COG0438@2|Bacteria,4NEJ6@976|Bacteroidetes,1HYVG@117743|Flavobacteriia,2NUAB@237|Flavobacterium 976|Bacteroidetes M Glycosyl transferase family 1 - - - - - - - - - - - - DUF1972,Glycos_transf_1 DYD3_k127_4201242_1 313606.M23134_05624 4.018e-46 183.0 COG3307@1|root,COG3307@2|Bacteria,4NUP9@976|Bacteroidetes,47V2J@768503|Cytophagia 976|Bacteroidetes M O-antigen ligase like membrane protein - - - - - - - - - - - - Wzy_C DYD3_k127_4208023_2 929562.Emtol_0397 2.892e-157 499.0 COG0446@1|root,COG0446@2|Bacteria,4NEK6@976|Bacteroidetes,47N6I@768503|Cytophagia 976|Bacteroidetes S Pyridine nucleotide-disulphide oxidoreductase - - 1.8.5.4 ko:K17218 ko00920,map00920 - R10152 RC03155 ko00000,ko00001,ko01000 - - - Pyr_redox_2 DYD3_k127_4208023_5 743722.Sph21_0292 2.337e-25 111.0 2C1KT@1|root,33DVE@2|Bacteria,4NY76@976|Bacteroidetes,1IUF1@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4208023_4 743722.Sph21_0290 2.613e-45 171.0 COG0845@1|root,COG0845@2|Bacteria,4NHFQ@976|Bacteroidetes,1IY3Y@117747|Sphingobacteriia 976|Bacteroidetes M Protein of unknown function (DUF3347) - - - - - - - - - - - - DUF3347 DYD3_k127_4208023_1 1450525.JATV01000009_gene822 7.378e-192 606.0 COG3696@1|root,COG3696@2|Bacteria,4NFD2@976|Bacteroidetes,1I1AN@117743|Flavobacteriia,2NSUT@237|Flavobacterium 976|Bacteroidetes P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran DYD3_k127_4208023_0 761193.Runsl_5945 6.09e-247 777.0 COG3696@1|root,COG3696@2|Bacteria,4P36A@976|Bacteroidetes,47N7N@768503|Cytophagia 976|Bacteroidetes P AcrB/AcrD/AcrF family - - - ko:K07787,ko:K15726 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.2,2.A.6.1.4 - - ACR_tran DYD3_k127_4208023_3 925409.KI911562_gene1713 1.242e-111 370.0 COG1538@1|root,COG1538@2|Bacteria,4NFEC@976|Bacteroidetes,1ISNJ@117747|Sphingobacteriia 976|Bacteroidetes MU Outer membrane efflux protein - - - - - - - - - - - - OEP DYD3_k127_4215256_3 700598.Niako_6085 2.665e-54 193.0 COG2885@1|root,COG2885@2|Bacteria 2|Bacteria M chlorophyll binding - - - - - - - - - - - - CHU_C,OMP_b-brl,OMP_b-brl_2,OmpA DYD3_k127_4215256_1 700598.Niako_6084 3.02e-186 584.0 COG0685@1|root,COG0685@2|Bacteria,4NDY0@976|Bacteroidetes,1IQZ5@117747|Sphingobacteriia 976|Bacteroidetes E Methylenetetrahydrofolate reductase metF - 1.5.1.20 ko:K00297 ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523 M00377 R01224,R07168 RC00081 ko00000,ko00001,ko00002,ko01000 - - - MTHFR DYD3_k127_4215256_2 700598.Niako_6083 1.658e-142 461.0 COG1137@1|root,COG1137@2|Bacteria,4NDUG@976|Bacteroidetes,1IQQ1@117747|Sphingobacteriia 976|Bacteroidetes S ABC transporter lptB - - ko:K06861 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko01000,ko02000 1.B.42.1 - - ABC_tran,BCA_ABC_TP_C DYD3_k127_4215256_0 700598.Niako_6082 3.214e-283 873.0 COG0318@1|root,COG0318@2|Bacteria,4PKJY@976|Bacteroidetes,1INYG@117747|Sphingobacteriia 976|Bacteroidetes IQ PFAM GH3 auxin-responsive promoter - - - - - - - - - - - - GH3 DYD3_k127_4217454_0 700598.Niako_2926 0.0 1048.0 COG1198@1|root,COG1198@2|Bacteria,4NFHB@976|Bacteroidetes,1IQGH@117747|Sphingobacteriia 976|Bacteroidetes L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA priA - - ko:K04066 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,ResIII DYD3_k127_4217454_1 700598.Niako_2923 1.186e-143 462.0 COG0812@1|root,COG0812@2|Bacteria,4NE78@976|Bacteroidetes,1IQP9@117747|Sphingobacteriia 976|Bacteroidetes M Cell wall formation murB - 1.3.1.98 ko:K00075 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R03191,R03192 RC02639 ko00000,ko00001,ko01000,ko01011 - - - FAD_binding_4,MurB_C DYD3_k127_4217454_3 1122176.KB903619_gene5403 6.53e-09 68.0 COG1361@1|root,COG1361@2|Bacteria,4NKYJ@976|Bacteroidetes 976|Bacteroidetes M Conserved repeat domain - - - - - - - - - - - - DUF11,Peptidase_M43,Reprolysin_3,fn3 DYD3_k127_4217454_2 215803.DB30_8307 2.942e-44 178.0 COG2133@1|root,COG2133@2|Bacteria,1PEJE@1224|Proteobacteria,437VF@68525|delta/epsilon subdivisions,2X352@28221|Deltaproteobacteria,2YUAU@29|Myxococcales 28221|Deltaproteobacteria G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - DUF4215,GSDH,Ig_3 DYD3_k127_4219576_0 700598.Niako_0401 0.0 1945.0 COG2911@1|root,COG2911@2|Bacteria,4NF7F@976|Bacteroidetes,1IPAB@117747|Sphingobacteriia 976|Bacteroidetes S TamB, inner membrane protein subunit of TAM complex - - - - - - - - - - - - TamB DYD3_k127_4220778_1 700598.Niako_1887 2.314e-120 394.0 COG1463@1|root,COG1463@2|Bacteria,4NGHE@976|Bacteroidetes,1IRW5@117747|Sphingobacteriia 976|Bacteroidetes Q COGs COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD DYD3_k127_4220778_0 700598.Niako_1886 1.804e-121 393.0 COG1127@1|root,COG1127@2|Bacteria,4NETJ@976|Bacteroidetes,1IQ62@117747|Sphingobacteriia 976|Bacteroidetes Q ABC-type transport system involved in resistance to organic solvents, ATPase component - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran DYD3_k127_4220778_2 700598.Niako_1885 7.287e-73 247.0 COG0767@1|root,COG0767@2|Bacteria,4NF7X@976|Bacteroidetes,1IPKD@117747|Sphingobacteriia 976|Bacteroidetes Q COGs COG0767 ABC-type transport system involved in resistance to organic solvents permease component - - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE DYD3_k127_422818_7 700598.Niako_1812 2.71e-20 91.0 COG0111@1|root,COG0111@2|Bacteria,4NDVN@976|Bacteroidetes 976|Bacteroidetes EH D-isomer specific 2-hydroxyacid dehydrogenase serA - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C,HAD DYD3_k127_422818_0 700598.Niako_1811 1.661e-171 547.0 COG1680@1|root,COG1680@2|Bacteria,4NFMQ@976|Bacteroidetes,1IQ1K@117747|Sphingobacteriia 976|Bacteroidetes V beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD3_k127_422818_1 700598.Niako_1810 9.481e-134 433.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,4NG2F@976|Bacteroidetes,1IR01@117747|Sphingobacteriia 976|Bacteroidetes G Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration nnrD - 4.2.1.136,5.1.99.6 ko:K17758,ko:K17759 - - - - ko00000,ko01000 - - - Carb_kinase,YjeF_N DYD3_k127_422818_2 700598.Niako_1810 8.633e-63 222.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,4NG2F@976|Bacteroidetes,1IR01@117747|Sphingobacteriia 976|Bacteroidetes G Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration nnrD - 4.2.1.136,5.1.99.6 ko:K17758,ko:K17759 - - - - ko00000,ko01000 - - - Carb_kinase,YjeF_N DYD3_k127_422818_3 1147.D082_25660 6.63e-53 213.0 COG2931@1|root,COG3204@1|root,COG3210@1|root,COG5184@1|root,COG2931@2|Bacteria,COG3204@2|Bacteria,COG3210@2|Bacteria,COG5184@2|Bacteria,1G5KY@1117|Cyanobacteria,1H6DE@1142|Synechocystis 1117|Cyanobacteria QU Cadherin repeats. - - - - - - - - - - - - Cadherin,Calx-beta,HemolysinCabind,VCBS DYD3_k127_422818_6 700598.Niako_0215 6.929e-23 115.0 COG1520@1|root,COG2247@1|root,COG1520@2|Bacteria,COG2247@2|Bacteria,4NGDE@976|Bacteroidetes,1IWE3@117747|Sphingobacteriia 976|Bacteroidetes M cell wall binding repeat - - - - - - - - - - - - - DYD3_k127_422818_5 760192.Halhy_5845 1.061e-34 140.0 2CFKF@1|root,34BJX@2|Bacteria 2|Bacteria S SnoaL-like domain - - - - - - - - - - - - DUF4440 DYD3_k127_422818_4 929556.Solca_0464 1.063e-44 169.0 COG2169@1|root,COG2169@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - 2.1.1.63,3.1.31.1,3.2.2.21 ko:K01174,ko:K07720,ko:K10778,ko:K13529,ko:K15051 ko02020,ko03410,map02020,map03410 M00519 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko03000,ko03400 - - - Ada_Zn_binding,AraC_N,DNA_binding_1,Endonuclea_NS_2,HTH_18,PocR DYD3_k127_4230214_2 1122605.KB893625_gene2323 1.956e-23 100.0 COG1733@1|root,COG1733@2|Bacteria,4NV02@976|Bacteroidetes,1IZ34@117747|Sphingobacteriia 976|Bacteroidetes K HxlR-like helix-turn-helix - - - - - - - - - - - - HxlR DYD3_k127_4230214_0 595537.Varpa_4592 7.419e-101 336.0 COG2084@1|root,COG2084@2|Bacteria,1NTE9@1224|Proteobacteria,2W3DG@28216|Betaproteobacteria 2|Bacteria I PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - - - - - - - - - - NAD_binding_2 DYD3_k127_4230214_1 485918.Cpin_4913 2.195e-35 139.0 COG4978@1|root,COG4978@2|Bacteria 2|Bacteria - - MA20_43725 - - ko:K13652 - - - - ko00000,ko03000 - - - GyrI-like,Polyketide_cyc2 DYD3_k127_4237016_2 1443665.JACA01000007_gene203 6.318e-05 45.0 COG0500@1|root,COG2226@2|Bacteria,4PH0U@976|Bacteroidetes,1IHRF@117743|Flavobacteriia,2YIT4@290174|Aquimarina 976|Bacteroidetes Q Hypothetical methyltransferase - - - - - - - - - - - - Methyltransf_11 DYD3_k127_4237016_1 1122605.KB893633_gene4296 2.541e-86 294.0 COG1028@1|root,COG1028@2|Bacteria,4NHDB@976|Bacteroidetes,1INQP@117747|Sphingobacteriia 976|Bacteroidetes IQ Short-chain dehydrogenase reductase SDR - - - - - - - - - - - - adh_short_C2 DYD3_k127_4237016_0 880526.KE386488_gene1647 1.099e-158 514.0 COG3250@1|root,COG3250@2|Bacteria,4NHBP@976|Bacteroidetes,2FPQV@200643|Bacteroidia 976|Bacteroidetes G Glycosyl hydrolases family 2, TIM barrel domain - - - - - - - - - - - - Bgal_small_N,Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N DYD3_k127_4241299_2 925409.KI911562_gene765 2.589e-44 161.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,4NF70@976|Bacteroidetes,1IPE8@117747|Sphingobacteriia 976|Bacteroidetes EU Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - - - - - - - - - - DPPIV_N,PD40,Peptidase_S9 DYD3_k127_4241299_0 700598.Niako_0332 0.0 1079.0 COG0449@1|root,COG0449@2|Bacteria,4NE8Q@976|Bacteroidetes,1IPQZ@117747|Sphingobacteriia 976|Bacteroidetes M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source glmS GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - GATase_6,SIS DYD3_k127_4241299_1 700598.Niako_0331 4.325e-231 721.0 COG0448@1|root,COG0448@2|Bacteria,4PKFG@976|Bacteroidetes,1IPMM@117747|Sphingobacteriia 976|Bacteroidetes G Domain of unknown function (DUF4954) - - - - - - - - - - - - DUF4954 DYD3_k127_424376_0 700598.Niako_6427 1.979e-252 798.0 COG1983@1|root,COG1983@2|Bacteria,4NG3T@976|Bacteroidetes,1IPE9@117747|Sphingobacteriia 976|Bacteroidetes KT PFAM PspC domain - - - ko:K03973 - - - - ko00000,ko02048,ko03000 - - - DUF2807,PspC DYD3_k127_424376_4 700598.Niako_6426 2.682e-63 218.0 COG1695@1|root,COG1695@2|Bacteria,4NSI4@976|Bacteroidetes,1IT3H@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - ko:K10947 - - - - ko00000,ko03000 - - - PadR DYD3_k127_424376_1 700598.Niako_6424 2.547e-202 639.0 COG3014@1|root,COG3014@2|Bacteria,4NIIU@976|Bacteroidetes,1IR21@117747|Sphingobacteriia 976|Bacteroidetes S protein conserved in bacteria - - - ko:K09859 - - - - ko00000 - - - TPR_2 DYD3_k127_424376_3 700598.Niako_6423 7.823e-94 310.0 COG3417@1|root,COG3417@2|Bacteria,4NFXF@976|Bacteroidetes,1IQZR@117747|Sphingobacteriia 976|Bacteroidetes M Peptidoglycan-synthase activator LpoB - - - ko:K07337 - - - - ko00000 - - - LpoB DYD3_k127_424376_5 700598.Niako_6422 4.017e-30 124.0 2E988@1|root,333GN@2|Bacteria,4NURD@976|Bacteroidetes,1IUF4@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_424376_2 700598.Niako_6421 1.015e-183 577.0 COG3491@1|root,COG3491@2|Bacteria,4NED5@976|Bacteroidetes,1IR2B@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the iron ascorbate-dependent oxidoreductase family - - - - - - - - - - - - 2OG-FeII_Oxy,DIOX_N DYD3_k127_4245563_1 700598.Niako_5755 1.185e-121 392.0 COG4102@1|root,COG4102@2|Bacteria,4NFFC@976|Bacteroidetes,1IQCH@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD3_k127_4245563_2 700598.Niako_5756 1.92e-30 120.0 2BZQY@1|root,2ZVH4@2|Bacteria,4P73I@976|Bacteroidetes,1IZGJ@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4245563_0 700598.Niako_5757 0.0 1160.0 COG0187@1|root,COG0187@2|Bacteria,4NE0P@976|Bacteroidetes,1IP1Y@117747|Sphingobacteriia 976|Bacteroidetes L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrB - 5.99.1.3 ko:K02470 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim DYD3_k127_4247609_0 408672.NBCG_02304 2.01e-11 78.0 COG4932@1|root,COG4932@2|Bacteria,2HEZQ@201174|Actinobacteria,4DW25@85009|Propionibacteriales 201174|Actinobacteria M domain protein - - - - - - - - - - - - - DYD3_k127_4249188_4 1121875.KB907549_gene1859 6.155e-14 73.0 COG3386@1|root,COG3386@2|Bacteria,4NIMX@976|Bacteroidetes,1HZA9@117743|Flavobacteriia 976|Bacteroidetes G SMP-30/Gluconolaconase/LRE-like region - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL DYD3_k127_4249188_3 487796.Flav2ADRAFT_1551 5.406e-17 82.0 COG0673@1|root,COG0673@2|Bacteria,4NGHJ@976|Bacteroidetes,1HZS8@117743|Flavobacteriia 976|Bacteroidetes S Pfam Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_4249188_1 1123248.KB893385_gene4840 1.006e-112 373.0 COG1082@1|root,COG1082@2|Bacteria,4NJJZ@976|Bacteroidetes,1IQTR@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Xylose - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_4249188_2 1121895.Q765_06285 6.193e-50 182.0 COG0784@1|root,COG0784@2|Bacteria,4NR3J@976|Bacteroidetes,1ID2P@117743|Flavobacteriia,2NX24@237|Flavobacterium 976|Bacteroidetes T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg DYD3_k127_4249188_0 211165.AJLN01000145_gene1322 4.279e-160 519.0 COG2730@1|root,COG2730@2|Bacteria,1G3EZ@1117|Cyanobacteria 1117|Cyanobacteria G Protein of unknown function (DUF4038) - - - - - - - - - - - - Collagen_bind_2,DUF4038 DYD3_k127_4250780_0 700598.Niako_0419 1.422e-171 546.0 COG1482@1|root,COG1482@2|Bacteria,4NKD9@976|Bacteroidetes,1IVTQ@117747|Sphingobacteriia 976|Bacteroidetes G TIGRFAM mannose-6-phosphate isomerase, class I - - 5.3.1.8 ko:K01809 ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130 M00114 R01819 RC00376 ko00000,ko00001,ko00002,ko01000 - - - PMI_typeI DYD3_k127_4250780_2 700598.Niako_0420 1.594e-62 220.0 2FEUI@1|root,346TG@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_4250780_1 700598.Niako_0422 6.118e-82 276.0 COG0328@1|root,COG0328@2|Bacteria,4NNQX@976|Bacteroidetes,1ISJ9@117747|Sphingobacteriia 976|Bacteroidetes L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids rnhA - 3.1.26.4 ko:K03469 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - RNase_H DYD3_k127_4250780_3 700598.Niako_0423 7.324e-35 134.0 COG4799@1|root,COG4799@2|Bacteria,4NEMJ@976|Bacteroidetes,1IPEF@117747|Sphingobacteriia 976|Bacteroidetes I Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) accD5 - - - - - - - - - - - Carboxyl_trans DYD3_k127_4263933_3 1123008.KB905694_gene1715 1.37e-65 227.0 2CB8S@1|root,30PE6@2|Bacteria,4NU1E@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function (DUF4199) - - - - - - - - - - - - DUF4199 DYD3_k127_4263933_4 1237149.C900_01954 1.492e-63 231.0 COG2197@1|root,COG2197@2|Bacteria,4NQSY@976|Bacteroidetes,47QHW@768503|Cytophagia 976|Bacteroidetes KT helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE DYD3_k127_4263933_1 616991.JPOO01000001_gene3360 7.621e-92 310.0 COG2207@1|root,COG2207@2|Bacteria,4PI6R@976|Bacteroidetes,1IG3A@117743|Flavobacteriia,23IGX@178469|Arenibacter 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_4263933_5 279714.FuraDRAFT_1495 7.834e-27 114.0 COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,2VKYW@28216|Betaproteobacteria 28216|Betaproteobacteria P fad dependent oxidoreductase - - - ko:K07222 - - - - ko00000 - - - Pyr_redox_3 DYD3_k127_4263933_2 279714.FuraDRAFT_1495 2.937e-87 297.0 COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,2VKYW@28216|Betaproteobacteria 28216|Betaproteobacteria P fad dependent oxidoreductase - - - ko:K07222 - - - - ko00000 - - - Pyr_redox_3 DYD3_k127_4263933_0 743722.Sph21_0906 5.007e-132 428.0 COG0596@1|root,COG0596@2|Bacteria,4NFBJ@976|Bacteroidetes 976|Bacteroidetes S Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_4275306_1 1122605.KB893625_gene1866 3.385e-143 458.0 28I74@1|root,2Z8A0@2|Bacteria,4NIGF@976|Bacteroidetes,1IWN4@117747|Sphingobacteriia 976|Bacteroidetes S COG NOG26804 non supervised orthologous group - - - - - - - - - - - - - DYD3_k127_4275306_0 485918.Cpin_5520 3.998e-229 724.0 COG0614@1|root,COG0614@2|Bacteria,4NEXQ@976|Bacteroidetes,1IQ8Y@117747|Sphingobacteriia 976|Bacteroidetes P RagB SusD domain protein - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_4275306_2 485918.Cpin_5521 5.982e-45 169.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1INRA@117747|Sphingobacteriia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_4277221_0 485918.Cpin_3392 3.431e-144 481.0 2C4IS@1|root,2Z81U@2|Bacteria,4NETW@976|Bacteroidetes,1IQYA@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Lantibiotic dehydratase - - - ko:K20483 ko02020,ko02024,map02020,map02024 - - - ko00000,ko00001 - - - Lant_dehydr_C,Lant_dehydr_N DYD3_k127_4278592_2 925409.KI911562_gene1082 8.492e-296 926.0 COG1523@1|root,COG1523@2|Bacteria,4NHA4@976|Bacteroidetes,1IQ6P@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 13 family - - - - - - - - - - - - Alpha-amylase,CBM_48 DYD3_k127_4278592_4 700598.Niako_6045 3.896e-131 420.0 COG1051@1|root,COG4111@1|root,COG1051@2|Bacteria,COG4111@2|Bacteria,4NH28@976|Bacteroidetes,1IP93@117747|Sphingobacteriia 976|Bacteroidetes F Nudix hydrolase - - 3.6.1.55 ko:K03574 - - - - ko00000,ko01000,ko03400 - - - NUDIX DYD3_k127_4278592_1 509635.N824_04720 0.0 1060.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1IQK2@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_4278592_3 1122176.KB903539_gene1338 1.084e-196 625.0 COG3637@1|root,COG3637@2|Bacteria,4NE4Y@976|Bacteroidetes,1IRFK@117747|Sphingobacteriia 976|Bacteroidetes M Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_4278592_0 925409.KI911562_gene1388 0.0 1364.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IVZC@117747|Sphingobacteriia 976|Bacteroidetes S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_4294344_1 1185876.BN8_03026 6.886e-222 702.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes,47Y7H@768503|Cytophagia 976|Bacteroidetes H TonB-dependent Receptor Plug - - - ko:K21573 - - - - ko00000,ko02000 1.B.14.6.1 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_4294344_0 760192.Halhy_0390 9.566e-226 710.0 COG3637@1|root,COG3637@2|Bacteria,4NEA6@976|Bacteroidetes,1IREB@117747|Sphingobacteriia 976|Bacteroidetes M RagB SusD domain protein - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_4294344_2 760192.Halhy_4900 9.649e-119 393.0 2E473@1|root,32Z2Z@2|Bacteria,4NVZ4@976|Bacteroidetes,1IVB3@117747|Sphingobacteriia 976|Bacteroidetes S SusE outer membrane protein - - - ko:K21571 - - - - ko00000 - - - SusE DYD3_k127_4294344_3 925409.KI911562_gene1082 7.043e-38 149.0 COG1523@1|root,COG1523@2|Bacteria,4NHA4@976|Bacteroidetes,1IQ6P@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 13 family - - - - - - - - - - - - Alpha-amylase,CBM_48 DYD3_k127_4301233_4 700598.Niako_2574 8.413e-123 396.0 COG0665@1|root,COG0665@2|Bacteria,4NEUE@976|Bacteroidetes,1IPI3@117747|Sphingobacteriia 976|Bacteroidetes E PFAM FAD dependent oxidoreductase dadA - 1.4.5.1 ko:K00285 ko00360,map00360 - R01374,R09493 RC00006,RC00025 ko00000,ko00001,ko01000 - - - DAO DYD3_k127_4301233_5 1123248.KB893317_gene4311 1.704e-110 364.0 COG3391@1|root,COG3391@2|Bacteria,4PKC0@976|Bacteroidetes,1J0SQ@117747|Sphingobacteriia 976|Bacteroidetes S amine dehydrogenase activity - - - - - - - - - - - - - DYD3_k127_4301233_1 700598.Niako_2572 7.736e-248 775.0 COG4365@1|root,COG4365@2|Bacteria,4NGCF@976|Bacteroidetes,1IP68@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the BshC family bshC - - ko:K22136 - - - - ko00000 - - - BshC DYD3_k127_4301233_8 471854.Dfer_2176 5.866e-76 259.0 COG1896@1|root,COG1896@2|Bacteria,4NGW7@976|Bacteroidetes,47PAJ@768503|Cytophagia 976|Bacteroidetes S HD domain - - - ko:K07023 - - - - ko00000 - - - HD_3 DYD3_k127_4301233_7 700598.Niako_2570 1.009e-84 283.0 COG0041@1|root,COG0041@2|Bacteria,4NME9@976|Bacteroidetes,1IRVT@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) purE - 5.4.99.18 ko:K01588 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R07405 RC01947 ko00000,ko00001,ko00002,ko01000 - - - AIRC DYD3_k127_4301233_9 929713.NIASO_06310 3.09e-40 153.0 COG0399@1|root,COG0399@2|Bacteria,4NVFZ@976|Bacteroidetes 976|Bacteroidetes M ribosomal protein - - - - - - - - - - - - 23S_rRNA_IVP DYD3_k127_4301233_2 700598.Niako_2569 8.418e-172 550.0 COG1538@1|root,COG1538@2|Bacteria,4NEMI@976|Bacteroidetes,1INTW@117747|Sphingobacteriia 976|Bacteroidetes MU PFAM Outer membrane efflux protein - - - - - - - - - - - - OEP DYD3_k127_4301233_0 700598.Niako_2568 0.0 1568.0 COG0841@1|root,COG0841@2|Bacteria,4NDZG@976|Bacteroidetes,1IP63@117747|Sphingobacteriia 976|Bacteroidetes V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family bepE_4 - - ko:K03296,ko:K18138 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2 - - ACR_tran DYD3_k127_4301233_3 700598.Niako_2567 8.008e-133 429.0 COG0845@1|root,COG0845@2|Bacteria,4NERP@976|Bacteroidetes,1IQN0@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - HlyD_D23 DYD3_k127_4315188_0 391596.PBAL39_07655 0.0 1098.0 COG0793@1|root,COG4946@1|root,COG0793@2|Bacteria,COG4946@2|Bacteria,4NGU2@976|Bacteroidetes,1IRKC@117747|Sphingobacteriia 976|Bacteroidetes M Tricorn protease homolog - - - - - - - - - - - - PD40,Peptidase_S41,Tricorn_C1,Tricorn_PDZ DYD3_k127_4315188_1 700598.Niako_6941 6.171e-55 194.0 2B1RZ@1|root,31U7Q@2|Bacteria,4NR0B@976|Bacteroidetes,1IYX1@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4341286_5 388413.ALPR1_05795 5.222e-57 207.0 COG2311@1|root,COG2311@2|Bacteria,4NG01@976|Bacteroidetes,47P3T@768503|Cytophagia 976|Bacteroidetes S Protein of unknown function (DUF418) - - - ko:K07148 - - - - ko00000 - - - DUF418 DYD3_k127_4341286_1 700598.Niako_7053 1.019e-173 552.0 COG0577@1|root,COG0577@2|Bacteria,4NGDV@976|Bacteroidetes 976|Bacteroidetes V Psort location CytoplasmicMembrane, score 10.00 - - - - - - - - - - - - - DYD3_k127_4341286_3 700598.Niako_7054 5.158e-104 342.0 COG1136@1|root,COG1136@2|Bacteria,4NN5Z@976|Bacteroidetes,1IXVG@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_4341286_2 700598.Niako_7055 2.955e-123 414.0 2EU8C@1|root,33MQS@2|Bacteria,4NZBW@976|Bacteroidetes,1IZHZ@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4836) - - - - - - - - - - - - DUF4836 DYD3_k127_4341286_0 700598.Niako_7056 1.611e-217 682.0 COG0124@1|root,COG0124@2|Bacteria,4NE8N@976|Bacteroidetes,1IW4I@117747|Sphingobacteriia 976|Bacteroidetes J Histidyl-tRNA synthetase hisS - 6.1.1.21 ko:K01892 ko00970,map00970 M00359,M00360 R03655 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_His DYD3_k127_4341286_4 700598.Niako_7057 1.12e-70 242.0 COG0394@1|root,COG0394@2|Bacteria,4NNQZ@976|Bacteroidetes,1IYAU@117747|Sphingobacteriia 976|Bacteroidetes T Low molecular weight phosphotyrosine protein phosphatase ptpA - 3.1.3.48 ko:K01104 - - - - ko00000,ko01000 - - - LMWPc DYD3_k127_4350558_0 926562.Oweho_2942 2.24e-232 740.0 COG1629@1|root,COG4771@2|Bacteria,4NFZY@976|Bacteroidetes,1HYJ3@117743|Flavobacteriia,2PAHE@246874|Cryomorphaceae 976|Bacteroidetes P TonB dependent receptor - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec DYD3_k127_4350558_1 1450525.JATV01000016_gene3017 6.191e-61 215.0 COG3182@1|root,COG3182@2|Bacteria,4NIXJ@976|Bacteroidetes,1I1PH@117743|Flavobacteriia,2NYZR@237|Flavobacterium 976|Bacteroidetes S PepSY-associated TM region - - - ko:K09939 - - - - ko00000 - - - PepSY_TM DYD3_k127_4354374_2 700598.Niako_4909 1.768e-31 123.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INWS@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4354374_0 700598.Niako_4909 0.0 1118.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INWS@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4354374_1 1124780.ANNU01000069_gene1087 1.584e-40 161.0 COG0596@1|root,COG0596@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds pip - 3.4.11.5 ko:K01259 ko00330,map00330 - R00135 - ko00000,ko00001,ko01000,ko01002 - - - Abhydrolase_1 DYD3_k127_4355471_10 700598.Niako_6015 3.556e-28 114.0 COG0210@1|root,COG2887@1|root,COG0210@2|Bacteria,COG2887@2|Bacteria,4NIIR@976|Bacteroidetes,1IPF7@117747|Sphingobacteriia 976|Bacteroidetes L Belongs to the helicase family. UvrD subfamily - - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C DYD3_k127_4355471_1 700598.Niako_6016 2.741e-181 579.0 COG4704@1|root,COG4704@2|Bacteria,4NGPF@976|Bacteroidetes,1IQZP@117747|Sphingobacteriia 976|Bacteroidetes S Bacterial Ig-like domain - - - - - - - - - - - - Big_5,fn3_3 DYD3_k127_4355471_6 700598.Niako_6017 2.934e-103 338.0 COG0353@1|root,COG0353@2|Bacteria,4NEWI@976|Bacteroidetes,1INZ4@117747|Sphingobacteriia 976|Bacteroidetes L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO recR - - ko:K06187 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecR,Toprim_4 DYD3_k127_4355471_2 925409.KI911562_gene472 2.328e-173 548.0 COG0646@1|root,COG0646@2|Bacteria,4NFRF@976|Bacteroidetes,1IR6C@117747|Sphingobacteriia 976|Bacteroidetes E Methionine synthase metH - 2.1.1.13 ko:K00548 ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 M00017 R00946,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - B12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans DYD3_k127_4355471_0 700598.Niako_6019 0.0 1534.0 COG1410@1|root,COG1410@2|Bacteria,4PKI8@976|Bacteroidetes,1J0KU@117747|Sphingobacteriia 976|Bacteroidetes E B12 binding domain metH - 2.1.1.13 ko:K00548 ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 M00017 R00946,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - B12-binding,B12-binding_2,DUF559,Met_synt_B12,Pterin_bind DYD3_k127_4355471_4 700598.Niako_6021 9.857e-132 423.0 COG1611@1|root,COG1611@2|Bacteria,4NF20@976|Bacteroidetes,1IQFQ@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the LOG family - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox DYD3_k127_4355471_3 700598.Niako_6022 1.122e-145 466.0 COG0708@1|root,COG0708@2|Bacteria,4NEY3@976|Bacteroidetes,1INQC@117747|Sphingobacteriia 976|Bacteroidetes L exodeoxyribonuclease III xth - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos DYD3_k127_4355471_9 700598.Niako_6023 1.395e-37 143.0 2C9BK@1|root,32RP1@2|Bacteria,4NSPA@976|Bacteroidetes,1IU9B@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4286) - - - - - - - - - - - - DUF4286 DYD3_k127_4355471_8 700598.Niako_6024 1.518e-41 154.0 COG0776@1|root,COG0776@2|Bacteria,4NSK6@976|Bacteroidetes,1IYVW@117747|Sphingobacteriia 976|Bacteroidetes L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions hupB - - ko:K03530 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding DYD3_k127_4355471_5 700598.Niako_6026 7.17e-106 347.0 COG0259@1|root,COG0259@2|Bacteria,4NFH7@976|Bacteroidetes,1IW6H@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) pdxH - 1.4.3.5 ko:K00275 ko00750,ko01100,ko01120,map00750,map01100,map01120 M00124 R00277,R00278,R01710,R01711 RC00048,RC00116 ko00000,ko00001,ko00002,ko01000 - - - PNP_phzG_C,Putative_PNPOx DYD3_k127_4361347_1 700598.Niako_6257 4.196e-163 518.0 COG0673@1|root,COG0673@2|Bacteria,4NFMS@976|Bacteroidetes,1IREZ@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_4361347_0 700598.Niako_6258 3.496e-213 664.0 COG1082@1|root,COG1082@2|Bacteria,4NGBE@976|Bacteroidetes,1IQDJ@117747|Sphingobacteriia 976|Bacteroidetes G AP endonuclease - - - - - - - - - - - - AP_endonuc_2,AP_endonuc_2_N DYD3_k127_4361347_2 700598.Niako_6259 4.971e-35 138.0 COG4654@1|root,COG4654@2|Bacteria,4NWVM@976|Bacteroidetes 976|Bacteroidetes C Cytochrome c - - - ko:K08738 ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00595 R10151 RC03151,RC03152 ko00000,ko00001,ko00002 3.D.4.6 - - Cytochrom_C DYD3_k127_4361347_3 1122605.KB893626_gene2598 4.9e-08 57.0 COG2133@1|root,COG2133@2|Bacteria,4NMT2@976|Bacteroidetes,1ISF8@117747|Sphingobacteriia 976|Bacteroidetes G Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_4368192_2 468059.AUHA01000005_gene2628 2.222e-27 112.0 COG3158@1|root,COG3158@2|Bacteria,4NET9@976|Bacteroidetes,1IP14@117747|Sphingobacteriia 976|Bacteroidetes P Transport of potassium into the cell kup - - ko:K03549 - - - - ko00000,ko02000 2.A.72 - - K_trans DYD3_k127_4368192_0 1121012.AUKX01000070_gene1855 9.416e-96 325.0 COG0642@1|root,COG2205@2|Bacteria,4NFYN@976|Bacteroidetes,1HZ6X@117743|Flavobacteriia,23I0R@178469|Arenibacter 976|Bacteroidetes T Domain of unknown function (DUF4118) - - 2.7.13.3 ko:K07646 ko02020,map02020 M00454 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DUF4118,HATPase_c,HisKA DYD3_k127_4368192_1 929562.Emtol_0934 2.243e-94 314.0 COG0745@1|root,COG0745@2|Bacteria,4NIQC@976|Bacteroidetes,47PG7@768503|Cytophagia 976|Bacteroidetes K COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - ko:K07667 ko02020,ko02024,map02020,map02024 M00454 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C DYD3_k127_4387357_1 504472.Slin_0946 3.181e-61 217.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47M0S@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4387357_0 761193.Runsl_1970 7.4e-323 1000.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4390339_3 700598.Niako_0115 1.497e-107 353.0 COG0083@1|root,COG0083@2|Bacteria,4NE2M@976|Bacteroidetes,1IP1D@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate thrB - 2.7.1.39 ko:K00872 ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230 M00018 R01771 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD3_k127_4390339_1 700598.Niako_0114 0.0 1345.0 COG0460@1|root,COG0527@1|root,COG0460@2|Bacteria,COG0527@2|Bacteria,4NFGR@976|Bacteroidetes,1IQWY@117747|Sphingobacteriia 976|Bacteroidetes E ACT domain thrA - 1.1.1.3,2.7.2.4 ko:K12524 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00017,M00018,M00526,M00527 R00480,R01773,R01775 RC00002,RC00043,RC00087 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,ACT,ACT_7,Homoserine_dh,NAD_binding_3 DYD3_k127_4390339_0 700598.Niako_0113 0.0 1462.0 COG2352@1|root,COG2352@2|Bacteria,4NFC0@976|Bacteroidetes,1IR3G@117747|Sphingobacteriia 976|Bacteroidetes C Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle ppc - 4.1.1.31 ko:K01595 ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200 M00168,M00170,M00171,M00172,M00173,M00346,M00374 R00345 RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPcase DYD3_k127_4390339_2 1123248.KB893385_gene4853 5.224e-117 387.0 28IEX@1|root,2Z8GX@2|Bacteria,4NGBY@976|Bacteroidetes,1IRCZ@117747|Sphingobacteriia 976|Bacteroidetes S Putative beta-barrel porin-2, OmpL-like. bbp2 - - - - - - - - - - - - BBP2 DYD3_k127_4390339_4 1123248.KB893385_gene4854 5.524e-81 273.0 COG0004@1|root,COG0004@2|Bacteria,4NDV2@976|Bacteroidetes,1IPB8@117747|Sphingobacteriia 976|Bacteroidetes P Ammonium Transporter - - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp DYD3_k127_4395723_2 700598.Niako_6281 2.158e-82 275.0 COG2321@1|root,COG2321@2|Bacteria,4NDTZ@976|Bacteroidetes,1INUC@117747|Sphingobacteriia 976|Bacteroidetes S Neutral zinc metallopeptidase ypfJ - - ko:K07054 - - - - ko00000 - - - Zn_peptidase DYD3_k127_4395723_3 700598.Niako_6280 1.233e-39 154.0 COG3187@1|root,COG3187@2|Bacteria,4NVJS@976|Bacteroidetes,1IZGT@117747|Sphingobacteriia 976|Bacteroidetes O META domain - - - - - - - - - - - - META DYD3_k127_4395723_1 700598.Niako_6279 4.698e-91 304.0 COG0671@1|root,COG0671@2|Bacteria,4NI23@976|Bacteroidetes,1IU3B@117747|Sphingobacteriia 976|Bacteroidetes I Acid phosphatase homologues - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 DYD3_k127_4395723_0 700598.Niako_6278 5.657e-304 949.0 COG0507@1|root,COG0507@2|Bacteria,4NF6J@976|Bacteroidetes,1IQC3@117747|Sphingobacteriia 976|Bacteroidetes L COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member - - - - - - - - - - - - HTH_40,Herpes_Helicase,PIF1 DYD3_k127_4396258_0 1123248.KB893318_gene4175 0.0 1389.0 COG0247@1|root,COG0277@1|root,COG0247@2|Bacteria,COG0277@2|Bacteria,4NEK3@976|Bacteroidetes,1IPPB@117747|Sphingobacteriia 976|Bacteroidetes C FAD linked oxidases, C-terminal domain - - - - - - - - - - - - FAD-oxidase_C,FAD_binding_4,Fer4_17 DYD3_k127_4396258_1 1166018.FAES_1969 3.096e-71 246.0 COG2942@1|root,COG2942@2|Bacteria,4NEH7@976|Bacteroidetes,47P5Q@768503|Cytophagia 976|Bacteroidetes G N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) - - 5.1.3.11 ko:K16213 - - R01445,R10810 RC00289 ko00000,ko01000 - - - GlcNAc_2-epim DYD3_k127_4403925_2 700598.Niako_4055 3.122e-165 525.0 COG2267@1|root,COG2267@2|Bacteria,4NFIJ@976|Bacteroidetes,1IQBD@117747|Sphingobacteriia 976|Bacteroidetes I Serine aminopeptidase, S33 fpaP - 3.4.11.5 ko:K01259 ko00330,map00330 - R00135 - ko00000,ko00001,ko01000,ko01002 - - - Abhydrolase_1 DYD3_k127_4403925_4 700598.Niako_2787 5.438e-117 413.0 COG3291@1|root,COG3291@2|Bacteria,4NGRJ@976|Bacteroidetes,1IWYM@117747|Sphingobacteriia 976|Bacteroidetes S Pregnancy-associated plasma protein-A - - - - - - - - - - - - Peptidase_M43 DYD3_k127_4403925_6 1469557.JSWF01000021_gene731 3.594e-24 120.0 COG1404@1|root,COG4409@1|root,COG1404@2|Bacteria,COG4409@2|Bacteria,4PM7K@976|Bacteroidetes,1IJKJ@117743|Flavobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 18 family - - - - - - - - - - - - PKD DYD3_k127_4403925_1 925409.KI911562_gene757 2.953e-201 640.0 COG0154@1|root,COG0154@2|Bacteria,4NF8C@976|Bacteroidetes,1IW1A@117747|Sphingobacteriia 976|Bacteroidetes J Amidase - - - - - - - - - - - - Amidase DYD3_k127_4403925_0 468059.AUHA01000002_gene282 3.815e-243 762.0 COG1574@1|root,COG1574@2|Bacteria,4NFMV@976|Bacteroidetes,1IPIC@117747|Sphingobacteriia 976|Bacteroidetes S Amidohydrolase family - - - - - - - - - - - - Amidohydro_3 DYD3_k127_4403925_5 700598.Niako_0389 1.437e-95 317.0 COG2755@1|root,COG2755@2|Bacteria,4NHWJ@976|Bacteroidetes,1IS35@117747|Sphingobacteriia 976|Bacteroidetes E Lipolytic protein - - - - - - - - - - - - Lipase_GDSL_2 DYD3_k127_4403925_3 700598.Niako_0388 8.614e-125 405.0 COG0518@1|root,COG0518@2|Bacteria,4NGC3@976|Bacteroidetes,1IPYJ@117747|Sphingobacteriia 976|Bacteroidetes F GMP synthase-glutamine amidotransferase - - - - - - - - - - - - GATase DYD3_k127_4405867_3 929556.Solca_2383 3.27e-38 152.0 COG1520@1|root,COG1520@2|Bacteria,4NFA9@976|Bacteroidetes,1ITHY@117747|Sphingobacteriia 976|Bacteroidetes S PQQ-like domain - - - - - - - - - - - - PQQ,PQQ_2,PQQ_3 DYD3_k127_4405867_2 700598.Niako_3944 3.073e-63 221.0 COG4430@1|root,COG4430@2|Bacteria,4NR0U@976|Bacteroidetes,1IT28@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF1905) - - - - - - - - - - - - DUF1905,OmdA DYD3_k127_4405867_4 925409.KI911562_gene2041 2.267e-18 91.0 COG2819@1|root,COG2819@2|Bacteria,4NH6C@976|Bacteroidetes,1IR2J@117747|Sphingobacteriia 976|Bacteroidetes S Putative esterase - - - - - - - - - - - - Esterase DYD3_k127_4405867_0 700598.Niako_3943 3.329e-186 590.0 COG1524@1|root,COG1524@2|Bacteria,4NFFG@976|Bacteroidetes,1IWYJ@117747|Sphingobacteriia 976|Bacteroidetes S Type I phosphodiesterase / nucleotide pyrophosphatase - - 3.1.3.1 ko:K01113 ko00790,ko01100,ko02020,map00790,map01100,map02020 M00126 R04620 RC00017 ko00000,ko00001,ko00002,ko01000 - - - Phosphodiest DYD3_k127_4405867_1 700598.Niako_3942 4.157e-81 280.0 COG1231@1|root,COG1231@2|Bacteria,4NP86@976|Bacteroidetes,1IU73@117747|Sphingobacteriia 976|Bacteroidetes E PFAM amine oxidase - - - - - - - - - - - - Amino_oxidase DYD3_k127_4410288_0 1185876.BN8_01536 0.0 1489.0 COG0366@1|root,COG3281@1|root,COG0366@2|Bacteria,COG3281@2|Bacteria,4NFE4@976|Bacteroidetes,47Y5G@768503|Cytophagia 976|Bacteroidetes G Maltogenic Amylase, C-terminal domain treS - 3.2.1.1,5.4.99.16 ko:K05343 ko00500,ko01100,map00500,map01100 - R01557,R02108,R02112,R11262 RC01816 ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,DUF3459,Malt_amylase_C DYD3_k127_4410288_1 760192.Halhy_6802 3.119e-182 573.0 COG0673@1|root,COG0673@2|Bacteria,4NF96@976|Bacteroidetes,1IQ5B@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_441694_3 926549.KI421517_gene3162 4.497e-84 284.0 COG2755@1|root,COG2755@2|Bacteria,4NFVN@976|Bacteroidetes,47Q1S@768503|Cytophagia 976|Bacteroidetes E GDSL-like Lipase/Acylhydrolase family - - - - - - - - - - - - Lipase_GDSL_2 DYD3_k127_441694_1 1121012.AUKX01000038_gene3737 1.44e-94 320.0 COG1621@1|root,COG1621@2|Bacteria,4NKER@976|Bacteroidetes,1IC8X@117743|Flavobacteriia,23IAT@178469|Arenibacter 976|Bacteroidetes G beta-fructofuranosidase activity - - - - - - - - - - - - - DYD3_k127_441694_2 743722.Sph21_2901 3.169e-84 286.0 COG2755@1|root,COG2755@2|Bacteria,4NPB3@976|Bacteroidetes,1IT5I@117747|Sphingobacteriia 976|Bacteroidetes E GDSL-like Lipase/Acylhydrolase - - - - - - - - - - - - Lipase_GDSL_2 DYD3_k127_441694_0 1122605.KB893637_gene3218 3.242e-110 359.0 COG1830@1|root,COG1830@2|Bacteria,4P0GF@976|Bacteroidetes 976|Bacteroidetes G DeoC/LacD family aldolase - - 2.3.1.245 ko:K08321 ko02024,map02024 - - - ko00000,ko00001,ko01000 - - - DeoC DYD3_k127_4429325_1 700598.Niako_0308 3.85e-104 340.0 COG0231@1|root,COG0231@2|Bacteria,4NDXA@976|Bacteroidetes,1IP45@117747|Sphingobacteriia 976|Bacteroidetes J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase efp GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - ko:K02356 - - - - ko00000,ko03012 - - - EFP,EFP_N,Elong-fact-P_C DYD3_k127_4429325_2 700598.Niako_0309 9.296e-69 238.0 COG0511@1|root,COG0511@2|Bacteria,4NM8U@976|Bacteroidetes,1ISET@117747|Sphingobacteriia 976|Bacteroidetes I first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA accB - - ko:K02160 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742 RC00040,RC00367 ko00000,ko00001,ko00002 - - - Biotin_lipoyl DYD3_k127_4429325_3 700598.Niako_5467 4.132e-46 170.0 2CCSR@1|root,32RWC@2|Bacteria,4NSDM@976|Bacteroidetes,1ITHS@117747|Sphingobacteriia 976|Bacteroidetes S S23 ribosomal protein - - - - - - - - - - - - 23S_rRNA_IVP DYD3_k127_4429325_0 700598.Niako_0310 1.201e-280 865.0 COG0439@1|root,COG0439@2|Bacteria,4NFEQ@976|Bacteroidetes,1INM0@117747|Sphingobacteriia 976|Bacteroidetes I acetyl-CoA carboxylase, biotin carboxylase accC - 6.3.4.14,6.4.1.2 ko:K01961 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04385 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,CPSase_L_D2 DYD3_k127_4442767_4 485917.Phep_3564 4.844e-39 149.0 COG0667@1|root,COG0667@2|Bacteria,4P099@976|Bacteroidetes,1IVJA@117747|Sphingobacteriia 976|Bacteroidetes C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD3_k127_4442767_0 929556.Solca_0753 2.808e-131 422.0 COG0500@1|root,COG2226@2|Bacteria,4NFRD@976|Bacteroidetes,1IVKT@117747|Sphingobacteriia 976|Bacteroidetes Q PFAM Methyltransferase - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 DYD3_k127_4442767_3 468059.AUHA01000002_gene1271 4.551e-44 175.0 COG3055@1|root,COG3055@2|Bacteria,4NG50@976|Bacteroidetes,1IRK4@117747|Sphingobacteriia 976|Bacteroidetes DZ Kelch repeat type 1 - - - - - - - - - - - - Kelch_1,Kelch_3,Kelch_4,Kelch_6,TIG DYD3_k127_4442767_2 1121481.AUAS01000018_gene477 6.626e-60 215.0 COG3279@1|root,COG3279@2|Bacteria,4NK6R@976|Bacteroidetes,47XDW@768503|Cytophagia 976|Bacteroidetes T Two component transcriptional regulator, LytTR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_4442767_1 471854.Dfer_0149 6.411e-60 216.0 COG2972@1|root,COG3292@1|root,COG3605@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,COG3605@2|Bacteria,4NHMQ@976|Bacteroidetes,47P3A@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_4447833_0 471854.Dfer_1503 4.955e-143 469.0 COG1956@1|root,COG2972@1|root,COG3292@1|root,COG1956@2|Bacteria,COG2972@2|Bacteria,COG3292@2|Bacteria,4NHMQ@976|Bacteroidetes,47P3A@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_4447833_1 1122605.KB893628_gene4494 8.057e-09 58.0 COG3279@1|root,COG3279@2|Bacteria,4NNHE@976|Bacteroidetes,1ISPK@117747|Sphingobacteriia 976|Bacteroidetes T COG3279 Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_4453275_0 700598.Niako_6858 2.83e-224 701.0 COG0322@1|root,COG0322@2|Bacteria,4NE61@976|Bacteroidetes,1IPMR@117747|Sphingobacteriia 976|Bacteroidetes L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision uvrC GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - ko:K03703 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N DYD3_k127_4453275_1 700598.Niako_6858 1.207e-68 235.0 COG0322@1|root,COG0322@2|Bacteria,4NE61@976|Bacteroidetes,1IPMR@117747|Sphingobacteriia 976|Bacteroidetes L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision uvrC GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - ko:K03703 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N DYD3_k127_4454877_0 362418.IW19_06340 9.901e-135 438.0 COG0006@1|root,COG0006@2|Bacteria,4NI0S@976|Bacteroidetes,1HZX1@117743|Flavobacteriia,2NTKA@237|Flavobacterium 976|Bacteroidetes E peptidase M24 - - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - AMP_N,Peptidase_M24 DYD3_k127_4454877_1 485918.Cpin_6898 4.163e-23 103.0 COG0526@1|root,COG0607@1|root,COG0526@2|Bacteria,COG0607@2|Bacteria,4NUPH@976|Bacteroidetes,1IUCC@117747|Sphingobacteriia 976|Bacteroidetes P Rhodanese Homology Domain glpE - - - - - - - - - - - Rhodanese DYD3_k127_4462902_4 929713.NIASO_15015 6.119e-10 60.0 2E5CT@1|root,3304V@2|Bacteria,4NUT8@976|Bacteroidetes,1IUKX@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4462902_2 700598.Niako_6484 8.797e-58 203.0 COG3695@1|root,COG3695@2|Bacteria,4NQ34@976|Bacteroidetes,1IT8P@117747|Sphingobacteriia 976|Bacteroidetes L PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain ogt - 2.1.1.63 ko:K00567,ko:K07443 - - - - ko00000,ko01000,ko03400 - - - DNA_binding_1 DYD3_k127_4462902_1 700598.Niako_6481 2.069e-75 258.0 COG2322@1|root,COG2322@2|Bacteria,4NM5N@976|Bacteroidetes,1ITGM@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF420) - - - ko:K08976 - - - - ko00000 - - - DUF420 DYD3_k127_4462902_0 700598.Niako_6480 2.485e-113 372.0 COG1999@1|root,COG1999@2|Bacteria,4NFH2@976|Bacteroidetes 976|Bacteroidetes S protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems - - - ko:K07152 - - - - ko00000,ko03029 - - - SCO1-SenC DYD3_k127_4463686_2 1123248.KB893370_gene5038 1.444e-82 281.0 COG0664@1|root,COG0664@2|Bacteria,4NFIS@976|Bacteroidetes,1IV4X@117747|Sphingobacteriia 976|Bacteroidetes K CRP FNR family - - - ko:K01420 - - - - ko00000,ko03000 - - - HTH_Crp_2,cNMP_binding DYD3_k127_4463686_1 1434325.AZQN01000001_gene665 3.364e-108 356.0 COG0730@1|root,COG0730@2|Bacteria,4NFWP@976|Bacteroidetes,47KYB@768503|Cytophagia 976|Bacteroidetes S membrane transporter protein - - - ko:K07090 - - - - ko00000 - - - TauE DYD3_k127_4463686_0 468059.AUHA01000005_gene2446 2.933e-205 642.0 COG0491@1|root,COG0607@1|root,COG0491@2|Bacteria,COG0607@2|Bacteria,4NE2Y@976|Bacteroidetes,1IUW3@117747|Sphingobacteriia 976|Bacteroidetes P Rhodanese Homology Domain - - 3.1.2.6 ko:K01069 ko00620,map00620 - R01736 RC00004,RC00137 ko00000,ko00001,ko01000 - - - Lactamase_B,Rhodanese DYD3_k127_4469433_4 1121904.ARBP01000005_gene4576 1.418e-06 56.0 COG0457@1|root,COG4251@1|root,COG0457@2|Bacteria,COG4251@2|Bacteria,4P2C8@976|Bacteroidetes,47UN6@768503|Cytophagia 976|Bacteroidetes T Tetratricopeptide repeat - - - - - - - - - - - - HATPase_c,TPR_12 DYD3_k127_4469433_2 1313421.JHBV01000042_gene3313 8.346e-38 161.0 COG3675@1|root,COG3675@2|Bacteria 2|Bacteria I Lipase (class 3) - - 3.1.1.3 ko:K01046 ko00561,ko01100,map00561,map01100 M00098 R02250,R02687 RC00020,RC00037,RC00041,RC00094 ko00000,ko00001,ko00002,ko01000 - - - Lipase_3 DYD3_k127_4469433_3 860228.Ccan_06620 8.385e-10 72.0 28HH2@1|root,2Z7ST@2|Bacteria,4NMWR@976|Bacteroidetes,1I1Q4@117743|Flavobacteriia,1ETGF@1016|Capnocytophaga 976|Bacteroidetes M Thiol-activated cytolysin - - - ko:K11031 ko02024,map02024 - - - ko00000,ko00001,ko02042 - - - Thiol_cytolysin DYD3_k127_4469433_1 700598.Niako_5588 4.011e-54 192.0 COG0861@1|root,COG0861@2|Bacteria,4NH6F@976|Bacteroidetes,1J0BP@117747|Sphingobacteriia 976|Bacteroidetes P Integral membrane protein TerC family - - - - - - - - - - - - TerC DYD3_k127_4482442_0 700598.Niako_4437 3.557e-281 871.0 COG0249@1|root,COG0249@2|Bacteria,4NEGB@976|Bacteroidetes,1IR7Y@117747|Sphingobacteriia 976|Bacteroidetes L that it carries out the mismatch recognition step. This protein has a weak ATPase activity mutS GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03555 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V DYD3_k127_4482442_1 700598.Niako_4436 9.01e-76 260.0 COG0566@1|root,COG0566@2|Bacteria,4NM8C@976|Bacteroidetes,1IS2Z@117747|Sphingobacteriia 976|Bacteroidetes J SpoU rRNA Methylase family spoU - - - - - - - - - - - SpoU_methylase DYD3_k127_4482442_2 1166018.FAES_0749 1.524e-20 99.0 2E7X6@1|root,332BR@2|Bacteria,4NXKC@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4484413_3 762903.Pedsa_3180 1.194e-81 276.0 COG1409@1|root,COG1409@2|Bacteria,4NF9K@976|Bacteroidetes,1IRB6@117747|Sphingobacteriia 976|Bacteroidetes S C terminal of Calcineurin-like phosphoesterase - - - - - - - - - - - - DUF4985,GHL10,Metallophos,MetallophosC,MetallophosN DYD3_k127_4484413_2 700598.Niako_0719 1.548e-87 294.0 COG2755@1|root,COG2755@2|Bacteria,4NPB3@976|Bacteroidetes,1IWDM@117747|Sphingobacteriia 976|Bacteroidetes E GDSL-like Lipase/Acylhydrolase - - - - - - - - - - - - Lipase_GDSL_2 DYD3_k127_4484413_0 700598.Niako_0720 3.83e-270 838.0 COG0554@1|root,COG0554@2|Bacteria,4NFUH@976|Bacteroidetes,1IP31@117747|Sphingobacteriia 976|Bacteroidetes C Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate glpK GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 ko:K00864 ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626 - R00847 RC00002,RC00017 ko00000,ko00001,ko01000,ko04147 - - - FGGY_C,FGGY_N DYD3_k127_4484413_1 700598.Niako_0721 1.066e-122 397.0 COG0580@1|root,COG0580@2|Bacteria,4NEFK@976|Bacteroidetes,1IPPA@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the MIP aquaporin (TC 1.A.8) family glpF - - ko:K02440 - - - - ko00000,ko02000 1.A.8.1,1.A.8.2 - - MIP DYD3_k127_4484413_4 700598.Niako_0722 1.813e-57 203.0 COG0584@1|root,COG0584@2|Bacteria,4NGI1@976|Bacteroidetes 976|Bacteroidetes C glycerophosphoryl diester phosphodiesterase - - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - FlgD_ig,GDPD,Phytase-like DYD3_k127_4489929_7 1123508.JH636443_gene4834 5.256e-70 248.0 COG3832@1|root,COG3832@2|Bacteria,2J11K@203682|Planctomycetes 203682|Planctomycetes S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_4489929_3 929556.Solca_3684 5.252e-147 471.0 COG4977@1|root,COG4977@2|Bacteria,4NGSR@976|Bacteroidetes,1IP57@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - - - - - - - - - - DJ-1_PfpI,HTH_18 DYD3_k127_4489929_9 1134413.ANNK01000052_gene1160 1.627e-60 214.0 COG1073@1|root,COG1073@2|Bacteria,1V7CZ@1239|Firmicutes,4HJJ0@91061|Bacilli,1ZH0J@1386|Bacillus 91061|Bacilli S Serine hydrolase - - - ko:K07002 - - - - ko00000 - - - Ser_hydrolase DYD3_k127_4489929_6 1144313.PMI10_04317 4.479e-73 256.0 COG2207@1|root,COG2207@2|Bacteria,4NF63@976|Bacteroidetes,1HZAQ@117743|Flavobacteriia,2NU4P@237|Flavobacterium 976|Bacteroidetes K AraC family transcriptional regulator - - - - - - - - - - - - AraC_N,HTH_18,HTH_AraC DYD3_k127_4489929_5 485918.Cpin_4896 3.081e-82 280.0 COG1028@1|root,COG1028@2|Bacteria,4NF7M@976|Bacteroidetes,1IXJ0@117747|Sphingobacteriia 976|Bacteroidetes IQ KR domain - - - - - - - - - - - - adh_short_C2 DYD3_k127_4489929_11 485918.Cpin_5750 3.633e-48 176.0 2CHCP@1|root,32S5R@2|Bacteria,4NS9G@976|Bacteroidetes,1ITGH@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 DYD3_k127_4489929_2 234267.Acid_3246 4.034e-185 592.0 COG0673@1|root,COG0673@2|Bacteria,3Y76D@57723|Acidobacteria 57723|Acidobacteria S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_4489929_4 1123248.KB893328_gene937 1.132e-119 390.0 COG1082@1|root,COG1082@2|Bacteria,4NG1K@976|Bacteroidetes,1IQA4@117747|Sphingobacteriia 976|Bacteroidetes G Xylose isomerase-like TIM barrel - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_4489929_10 468059.AUHA01000002_gene994 1.634e-56 203.0 COG2032@1|root,COG2032@2|Bacteria,4NM88@976|Bacteroidetes,1IXHN@117747|Sphingobacteriia 976|Bacteroidetes P Destroys radicals which are normally produced within the cells and which are toxic to biological systems sodC - 1.15.1.1 ko:K04565 ko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020 - - - ko00000,ko00001,ko01000 - - - Sod_Cu DYD3_k127_4489929_12 700598.Niako_0627 5.044e-36 144.0 COG0500@1|root,COG0500@2|Bacteria,4PN8K@976|Bacteroidetes 976|Bacteroidetes H Methyltransferase domain - - - - - - - - - - - - Methyltransf_11 DYD3_k127_4489929_1 929713.NIASO_04530 8.195e-193 608.0 COG3876@1|root,COG3876@2|Bacteria,4NEXD@976|Bacteroidetes,1INZD@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Uncharacterised conserved protein UCP016719 - - - - - - - - - - - - DUF1343 DYD3_k127_4489929_13 929713.NIASO_02360 1.561e-32 146.0 COG0457@1|root,COG0457@2|Bacteria,4P5GF@976|Bacteroidetes,1IZ5V@117747|Sphingobacteriia 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - - DYD3_k127_4489929_8 531844.FIC_02568 1.795e-61 217.0 COG0317@1|root,COG0317@2|Bacteria,4NPN0@976|Bacteroidetes,1I9A9@117743|Flavobacteriia 976|Bacteroidetes KT HD domain - - - - - - - - - - - - HD_4 DYD3_k127_4489929_0 700598.Niako_5871 4.678e-298 930.0 COG1529@1|root,COG1529@2|Bacteria,4NFFU@976|Bacteroidetes,1IW21@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Aldehyde oxidase xanthine dehydrogenase, molybdopterin binding - - - - - - - - - - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 DYD3_k127_4489929_15 700598.Niako_5870 1.856e-25 106.0 COG2080@1|root,COG2080@2|Bacteria,4NRVN@976|Bacteroidetes,1IY38@117747|Sphingobacteriia 976|Bacteroidetes C [2Fe-2S] binding domain - - 1.17.2.1 ko:K18029 ko00760,ko01120,map00760,map01120 M00622 R09473 RC00589 ko00000,ko00001,ko00002,ko01000 - - - Fer2,Fer2_2 DYD3_k127_4492925_0 1123248.KB893326_gene1293 1.074e-319 998.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes 976|Bacteroidetes S PFAM ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_4492925_1 760192.Halhy_1406 1.753e-177 563.0 COG0673@1|root,COG0673@2|Bacteria,4NENY@976|Bacteroidetes 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_4492925_2 1123278.KB893389_gene4173 5.423e-124 403.0 COG5285@1|root,COG5285@2|Bacteria,4NEH9@976|Bacteroidetes,47NTV@768503|Cytophagia 976|Bacteroidetes Q Phytanoyl-CoA dioxygenase (PhyH) - - 1.14.11.55 ko:K10674 ko00260,ko01120,map00260,map01120 - R08050 RC00661 ko00000,ko00001,ko01000 - - - PhyH DYD3_k127_4492925_5 504472.Slin_0983 4.512e-45 167.0 COG2259@1|root,COG2259@2|Bacteria,4P48I@976|Bacteroidetes 976|Bacteroidetes S DoxX - - - - - - - - - - - - DoxX DYD3_k127_4492925_3 700598.Niako_6109 4.987e-72 248.0 COG1595@1|root,COG1595@2|Bacteria,4NR0P@976|Bacteroidetes,1J0AP@117747|Sphingobacteriia 976|Bacteroidetes K PFAM RNA polymerase sigma factor 70, region 4 type 2 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_4492925_4 700598.Niako_6108 6.6e-71 253.0 COG3712@1|root,COG3712@2|Bacteria,4NM0I@976|Bacteroidetes 976|Bacteroidetes PT Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_4516937_5 700598.Niako_5069 2.071e-20 92.0 COG1858@1|root,COG1858@2|Bacteria,4NM2S@976|Bacteroidetes,1IVVD@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Cytochrome c, class I - - - - - - - - - - - - Cytochrom_C DYD3_k127_4516937_3 762903.Pedsa_1315 3.06e-62 222.0 2DBAY@1|root,2Z84S@2|Bacteria,4NGXD@976|Bacteroidetes,1ITMW@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - DUF1835 DYD3_k127_4516937_0 700598.Niako_5071 0.0 1353.0 COG1201@1|root,COG1201@2|Bacteria,4NGQ0@976|Bacteroidetes,1INS9@117747|Sphingobacteriia 976|Bacteroidetes L DEAD DEAH box helicase lhr - - ko:K03724 - - - - ko00000,ko01000,ko03400 - - - DEAD,DEAD_assoc,Helicase_C DYD3_k127_4516937_4 700598.Niako_5099 2.41e-59 209.0 COG2010@1|root,COG2010@2|Bacteria,4NSE3@976|Bacteroidetes,1IT2V@117747|Sphingobacteriia 976|Bacteroidetes C Haem-binding domain - - - - - - - - - - - - Haem_bd DYD3_k127_4516937_2 700598.Niako_5098 2.318e-99 328.0 COG1407@1|root,COG1407@2|Bacteria,4NMCE@976|Bacteroidetes,1IS9J@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Calcineurin-like phosphoesterase - - - - - - - - - - - - Metallophos DYD3_k127_4516937_1 700598.Niako_5097 3.757e-161 511.0 COG0123@1|root,COG0123@2|Bacteria,4NF3X@976|Bacteroidetes,1IQR5@117747|Sphingobacteriia 976|Bacteroidetes BQ PFAM Histone deacetylase - - - - - - - - - - - - Hist_deacetyl DYD3_k127_4519208_4 1267211.KI669560_gene806 7.029e-25 104.0 COG1233@1|root,COG1233@2|Bacteria,4NF7K@976|Bacteroidetes,1IQI6@117747|Sphingobacteriia 976|Bacteroidetes Q COG1233 Phytoene dehydrogenase and related crtI - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 ko:K10027 ko00906,ko01100,ko01110,map00906,map01100,map01110 - R04787,R04798,R04800,R09691,R09692 RC01214,RC02088,RC02605 ko00000,ko00001,ko01000 - - - Amino_oxidase DYD3_k127_4519208_0 1267211.KI669560_gene807 3.004e-122 397.0 COG1562@1|root,COG1562@2|Bacteria,4NEIK@976|Bacteroidetes,1IP80@117747|Sphingobacteriia 976|Bacteroidetes I Squalene phytoene synthase crtB - - - - - - - - - - - SQS_PSY DYD3_k127_4519208_2 700598.Niako_6788 1.347e-79 268.0 COG1443@1|root,COG1443@2|Bacteria,4NFJV@976|Bacteroidetes,1ISDP@117747|Sphingobacteriia 976|Bacteroidetes I TIGRFAM isopentenyl-diphosphate delta-isomerase, type 1 idi - 5.3.3.2 ko:K01823 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00095,M00096,M00364,M00365,M00366,M00367 R01123 RC00455 ko00000,ko00001,ko00002,ko01000 - - - NUDIX DYD3_k127_4519208_3 1267211.KI669560_gene811 1.687e-71 244.0 COG3000@1|root,COG3000@2|Bacteria,4NMA9@976|Bacteroidetes,1IT6S@117747|Sphingobacteriia 976|Bacteroidetes I Fatty acid hydroxylase crtZ - 1.14.15.24 ko:K15746 ko00906,ko01100,ko01110,map00906,map01100,map01110 M00372 R07530,R07558,R07559,R07561,R07562,R07568,R07569,R07570,R07572,R07851,R09747 RC00478,RC00704,RC02629 ko00000,ko00001,ko00002,ko01000 - - - FA_hydroxylase DYD3_k127_4519208_1 1123248.KB893314_gene3610 1.461e-105 353.0 COG0644@1|root,COG0644@2|Bacteria,4NDTU@976|Bacteroidetes,1J0IB@117747|Sphingobacteriia 976|Bacteroidetes C Lycopene cyclase protein crtY - 5.5.1.19 ko:K06443 ko00906,ko01100,ko01110,map00906,map01100,map01110 M00097 R03824,R04801,R05341,R06962,R07856 RC01004,RC01964 ko00000,ko00001,ko00002,ko01000 - - - Lycopene_cycl DYD3_k127_4524686_5 1040989.AWZU01000023_gene4879 0.0001225 49.0 COG5649@1|root,COG5649@2|Bacteria,1RGY3@1224|Proteobacteria,2U9AG@28211|Alphaproteobacteria,3JY3Z@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 DYD3_k127_4524686_4 313589.JNB_19388 3.032e-09 63.0 COG4430@1|root,COG4430@2|Bacteria,2IN25@201174|Actinobacteria,4FHP4@85021|Intrasporangiaceae 201174|Actinobacteria S Bacteriocin-protection, YdeI or OmpD-Associated - - - - - - - - - - - - DUF1905,OmdA DYD3_k127_4524686_2 1123248.KB893328_gene877 7.122e-85 282.0 COG2514@1|root,COG2514@2|Bacteria,4NMJC@976|Bacteroidetes,1ISH3@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Glyoxalase Bleomycin resistance protein Dioxygenase superfamily catE - 1.13.11.2 ko:K07104 ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220 M00569 R00816,R04089,R05295,R05404,R05406,R07795 RC00387,RC00643,RC01075,RC01364,RC01914 ko00000,ko00001,ko00002,ko01000 - - - Glyoxalase DYD3_k127_4524686_1 700598.Niako_0896 8.923e-307 945.0 COG0488@1|root,COG0488@2|Bacteria,4NEHU@976|Bacteroidetes,1IP6T@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG0488 ATPase components of ABC transporter with duplicated ATPase domains - - - - - - - - - - - - ABC_tran,ABC_tran_Xtn DYD3_k127_4524686_0 700598.Niako_0899 0.0 1678.0 COG3536@1|root,COG3536@2|Bacteria,4PKQ9@976|Bacteroidetes,1IRMG@117747|Sphingobacteriia 976|Bacteroidetes S Protein conserved in bacteria - - - - - - - - - - - - - DYD3_k127_4524686_3 700598.Niako_0900 8.997e-28 112.0 COG4372@1|root,COG4372@2|Bacteria,4NTCH@976|Bacteroidetes,1J0SD@117747|Sphingobacteriia 976|Bacteroidetes S Transposase - - - - - - - - - - - - - DYD3_k127_4530293_2 714943.Mucpa_5088 5.251e-54 192.0 COG1975@1|root,COG1975@2|Bacteria,4NG02@976|Bacteroidetes,1IQT3@117747|Sphingobacteriia 976|Bacteroidetes O COGs COG1975 Xanthine and CO dehydrogenase maturation factor XdhC CoxF family xdhC - - ko:K07402 - - - - ko00000 - - - XdhC_C,XdhC_CoxI DYD3_k127_4530293_1 700598.Niako_0548 1.674e-76 260.0 COG2080@1|root,COG2080@2|Bacteria,4NMVV@976|Bacteroidetes,1IXEY@117747|Sphingobacteriia 976|Bacteroidetes C COGs COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS CutS homologs - - 1.3.99.16 ko:K07302 - - - - ko00000,ko01000 - - - Fer2,Fer2_2 DYD3_k127_4530293_0 700598.Niako_0547 0.0 1071.0 COG1529@1|root,COG1529@2|Bacteria,4NFFU@976|Bacteroidetes,1IR1H@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Aldehyde oxidase xanthine dehydrogenase, molybdopterin binding - - 1.3.99.16 ko:K07303 - - - - ko00000,ko01000 - - - Ald_Xan_dh_C2 DYD3_k127_4530293_3 1123248.KB893323_gene1617 2.338e-53 192.0 2DKFZ@1|root,309D6@2|Bacteria 2|Bacteria S Domain of unknown function (DUF4382) - - - - - - - - - - - - CarboxypepD_reg,DUF4382 DYD3_k127_4530293_4 1123057.P872_04730 1.113e-36 143.0 COG2010@1|root,COG2010@2|Bacteria,4NEXP@976|Bacteroidetes,47R7P@768503|Cytophagia 976|Bacteroidetes C Cytochrome C oxidase, cbb3-type, subunit III nirK - 1.7.2.1 ko:K00368,ko:K00405 ko00190,ko00910,ko01100,ko01120,ko02020,map00190,map00910,map01100,map01120,map02020 M00156,M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cu-oxidase,Cu-oxidase_3,Cytochrom_C,Cytochrome_CBB3 DYD3_k127_4530293_5 485918.Cpin_3714 1.037e-12 70.0 COG4099@1|root,COG4932@1|root,COG4099@2|Bacteria,COG4932@2|Bacteria,4NP7H@976|Bacteroidetes 976|Bacteroidetes M Fibronectin type 3 domain - - - - - - - - - - - - - DYD3_k127_4537225_3 226186.BT_4712 6.799e-58 212.0 2CG1Y@1|root,31NHZ@2|Bacteria,4NQ9Z@976|Bacteroidetes,2FV1A@200643|Bacteroidia,4ASFK@815|Bacteroidaceae 976|Bacteroidetes S Protein of unknown function (DUF1573) - - - - - - - - - - - - DUF1573 DYD3_k127_4537225_4 1203611.KB894542_gene509 4.043e-06 58.0 COG5492@1|root,COG5492@2|Bacteria,4PNR0@976|Bacteroidetes,2FNS2@200643|Bacteroidia 976|Bacteroidetes N COG3209 Rhs family protein - - - - - - - - - - - - DUF1735,Laminin_G_3 DYD3_k127_4537225_2 226186.BT_4710 3.281e-82 288.0 COG3621@1|root,COG3621@2|Bacteria,4NYS9@976|Bacteroidetes,2FS0H@200643|Bacteroidia,4AQK5@815|Bacteroidaceae 976|Bacteroidetes S Concanavalin A-like lectin/glucanases superfamily - - - - - - - - - - - - DUF1735,Laminin_G_3 DYD3_k127_4537225_1 411476.BACOVA_05561 1.781e-84 292.0 COG3325@1|root,COG3325@2|Bacteria,4P40Z@976|Bacteroidetes,2FTJK@200643|Bacteroidia,4ARCR@815|Bacteroidaceae 976|Bacteroidetes G Putative glycoside hydrolase Family 18, chitinase_18 - - - - - - - - - - - - DUF4849 DYD3_k127_4537225_0 1077285.AGDG01000027_gene1590 5.228e-117 386.0 COG4198@1|root,COG4198@2|Bacteria,4NI11@976|Bacteroidetes,2FN1W@200643|Bacteroidia,4ANK0@815|Bacteroidaceae 976|Bacteroidetes S Susd and RagB outer membrane lipoprotein - - - - - - - - - - - - SusD-like DYD3_k127_4545786_2 1123248.KB893327_gene808 1.114e-20 93.0 COG2382@1|root,COG2382@2|Bacteria,4NGBK@976|Bacteroidetes,1IY44@117747|Sphingobacteriia 976|Bacteroidetes P Putative esterase - - - - - - - - - - - - Esterase DYD3_k127_4545786_1 1123248.KB893327_gene808 1.745e-34 140.0 COG2382@1|root,COG2382@2|Bacteria,4NGBK@976|Bacteroidetes,1IY44@117747|Sphingobacteriia 976|Bacteroidetes P Putative esterase - - - - - - - - - - - - Esterase DYD3_k127_4545786_0 1492737.FEM08_21670 0.0 1296.0 COG3537@1|root,COG3537@2|Bacteria,4NDYB@976|Bacteroidetes,1HZAM@117743|Flavobacteriia,2NUP9@237|Flavobacterium 976|Bacteroidetes G hydrolase family 92 - - - - - - - - - - - - Glyco_hydro_92 DYD3_k127_4554976_1 452637.Oter_3759 5.515e-45 170.0 COG1595@1|root,COG1595@2|Bacteria 2|Bacteria K DNA-templated transcription, initiation - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_4554976_0 700598.Niako_4488 8.367e-121 391.0 COG2133@1|root,COG2133@2|Bacteria,4NGMS@976|Bacteroidetes,1IS5S@117747|Sphingobacteriia 976|Bacteroidetes G Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_4554976_2 700598.Niako_4489 7.995e-25 106.0 COG1254@1|root,COG1254@2|Bacteria,4NVB4@976|Bacteroidetes 976|Bacteroidetes C Belongs to the acylphosphatase family acyP - 3.6.1.7 ko:K01512 ko00620,ko00627,ko01120,map00620,map00627,map01120 - R00317,R01421,R01515 RC00043 ko00000,ko00001,ko01000 - - - Acylphosphatase DYD3_k127_4554976_3 1121904.ARBP01000003_gene6259 2.758e-10 63.0 2E4GE@1|root,32ZBK@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_4572311_1 700598.Niako_4341 2.199e-79 270.0 COG1708@1|root,COG1708@2|Bacteria,4NPRU@976|Bacteroidetes,1IT5C@117747|Sphingobacteriia 976|Bacteroidetes S nucleotidyltransferase activity - - - - - - - - - - - - NTP_transf_2 DYD3_k127_4572311_0 700598.Niako_4340 5.292e-238 742.0 COG1032@1|root,COG1032@2|Bacteria,4NKFV@976|Bacteroidetes,1IX3P@117747|Sphingobacteriia 976|Bacteroidetes C B12 binding domain - - - - - - - - - - - - B12-binding,Radical_SAM DYD3_k127_4572311_2 1046724.KB889828_gene2946 8.661e-13 71.0 COG2829@1|root,COG2829@2|Bacteria,1PC8I@1224|Proteobacteria,1RMJH@1236|Gammaproteobacteria,4672V@72275|Alteromonadaceae 1236|Gammaproteobacteria M COG2829 Outer membrane phospholipase A pldA GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005623,GO:0008970,GO:0009279,GO:0016020,GO:0016021,GO:0016298,GO:0016787,GO:0016788,GO:0019867,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031975,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044425,GO:0044462,GO:0044464,GO:0045203,GO:0046872,GO:0046983,GO:0052689,GO:0071944 3.1.1.32,3.1.1.4 ko:K01058 ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00564,map00565,map00590,map00591,map00592,map01100,map01110 - R01315,R01316,R01317,R02053,R02054,R04034,R07064,R07379,R07387,R07859,R07860 RC00020,RC00037,RC00041,RC00094 ko00000,ko00001,ko01000 - - iEC042_1314.EC042_4201,iECUMN_1333.ECUMN_4347,iEcSMS35_1347.EcSMS35_4188 PLA1 DYD3_k127_4573672_1 700598.Niako_4802 1.846e-95 320.0 COG1716@1|root,COG1716@2|Bacteria,4NGCK@976|Bacteroidetes 976|Bacteroidetes T ATPase activity - - - - - - - - - - - - FHA DYD3_k127_4573672_0 700598.Niako_4803 1.025e-107 355.0 COG0768@1|root,COG0772@1|root,COG0768@2|Bacteria,COG0772@2|Bacteria,4NK6S@976|Bacteroidetes,1IRIS@117747|Sphingobacteriia 976|Bacteroidetes DM Belongs to the SEDS family - - - - - - - - - - - - FTSW_RODA_SPOVE,Transpeptidase DYD3_k127_4577288_0 1121859.KB890739_gene2275 2.27e-217 689.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,47JZ9@768503|Cytophagia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_4577288_2 700598.Niako_0905 2.192e-122 396.0 COG1349@1|root,COG1349@2|Bacteria,4NE7U@976|Bacteroidetes,1IPYC@117747|Sphingobacteriia 976|Bacteroidetes K Bacterial regulatory proteins, deoR family - - - - - - - - - - - - DeoRC,HTH_DeoR DYD3_k127_4577288_1 700598.Niako_1220 6.385e-174 561.0 COG1452@1|root,COG1452@2|Bacteria,4NDU3@976|Bacteroidetes,1IP5G@117747|Sphingobacteriia 976|Bacteroidetes M OstA-like protein lptD - - - - - - - - - - - OstA_2 DYD3_k127_4577288_3 700598.Niako_1221 1.561e-105 349.0 COG1463@1|root,COG1463@2|Bacteria,4NHT9@976|Bacteroidetes,1IQZY@117747|Sphingobacteriia 976|Bacteroidetes Q ABC-type transport system involved in resistance to organic solvents periplasmic component - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD DYD3_k127_4583108_5 1123278.KB893409_gene35 6.399e-34 131.0 COG1082@1|root,COG1082@2|Bacteria,4NFMD@976|Bacteroidetes,47NNJ@768503|Cytophagia 976|Bacteroidetes G Xylose isomerase-like TIM barrel - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_4583108_7 980584.AFPB01000126_gene2405 8.144e-22 98.0 COG3668@1|root,COG3668@2|Bacteria,4NUJP@976|Bacteroidetes,1I475@117743|Flavobacteriia 976|Bacteroidetes S ParE toxin of type II toxin-antitoxin system, parDE - - - - - - - - - - - - ParE_toxin DYD3_k127_4583108_8 929713.NIASO_16155 4.556e-18 85.0 2DGUV@1|root,2ZXCW@2|Bacteria,4P983@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4583108_6 886377.Murru_0798 1.697e-29 118.0 COG1476@1|root,COG1476@2|Bacteria,4PKTU@976|Bacteroidetes,1I50U@117743|Flavobacteriia 976|Bacteroidetes K PFAM Helix-turn-helix type 3 - - - - - - - - - - - - HTH_3 DYD3_k127_4583108_0 700598.Niako_6452 0.0 1088.0 COG0022@1|root,COG1071@1|root,COG0022@2|Bacteria,COG1071@2|Bacteria,4NE71@976|Bacteroidetes,1IP3Q@117747|Sphingobacteriia 976|Bacteroidetes C Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type bfmBA - 1.2.4.4 ko:K11381 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C DYD3_k127_4583108_4 700598.Niako_6451 3.402e-46 169.0 COG1950@1|root,COG1950@2|Bacteria,4NT2I@976|Bacteroidetes,1ITMU@117747|Sphingobacteriia 976|Bacteroidetes S PFAM membrane protein of yvlD - - ko:K08972 - - - - ko00000 - - - Phage_holin_4_2 DYD3_k127_4583108_2 700598.Niako_6450 1.616e-203 640.0 COG0612@1|root,COG0612@2|Bacteria,4NEPT@976|Bacteroidetes,1IQAH@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase M16 - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C DYD3_k127_4583108_1 700598.Niako_6449 9.166e-215 673.0 COG0612@1|root,COG0612@2|Bacteria,4NEDZ@976|Bacteroidetes,1INSD@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase M16 - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C DYD3_k127_4583108_3 700598.Niako_6448 3.924e-186 587.0 COG0793@1|root,COG0793@2|Bacteria,4NEF4@976|Bacteroidetes,1IPFH@117747|Sphingobacteriia 976|Bacteroidetes M Aspartyl protease - - - - - - - - - - - - Asp_protease_2,PDZ,PDZ_2 DYD3_k127_4583786_3 1267211.KI669560_gene165 4.212e-32 125.0 COG1022@1|root,COG1022@2|Bacteria,4NEA4@976|Bacteroidetes,1IQD6@117747|Sphingobacteriia 976|Bacteroidetes I AMP-dependent synthetase fadD - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding DYD3_k127_4583786_0 700598.Niako_4742 1.6e-94 324.0 COG2067@1|root,COG2067@2|Bacteria,4NEP1@976|Bacteroidetes,1IPB7@117747|Sphingobacteriia 976|Bacteroidetes I membrane - - - - - - - - - - - - Toluene_X DYD3_k127_4583786_1 700598.Niako_4741 6.589e-74 267.0 28J4T@1|root,2Z90P@2|Bacteria,4NHUC@976|Bacteroidetes 976|Bacteroidetes S Domain of unknown function (DUF4270) - - - - - - - - - - - - DUF4270 DYD3_k127_4583786_2 1270193.JARP01000007_gene36 1.553e-45 169.0 COG3055@1|root,COG3055@2|Bacteria,4NG50@976|Bacteroidetes,1HY2Q@117743|Flavobacteriia,2NTYA@237|Flavobacterium 976|Bacteroidetes S Galactose oxidase, central domain nanM - - - - - - - - - - - Kelch_1,Kelch_3,Kelch_4,Kelch_6 DYD3_k127_4584217_2 700598.Niako_2004 5.821e-32 127.0 29GF6@1|root,303CZ@2|Bacteria,4NR6I@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - DUF4129 DYD3_k127_4584217_1 700598.Niako_2005 4.482e-149 482.0 28IVH@1|root,2Z8TX@2|Bacteria,4NEEW@976|Bacteroidetes,1IQEF@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - DUF4350 DYD3_k127_4584217_0 700598.Niako_2006 1.055e-172 544.0 COG0714@1|root,COG0714@2|Bacteria,4NDVZ@976|Bacteroidetes,1IPUZ@117747|Sphingobacteriia 976|Bacteroidetes S ATPase family associated with various cellular activities (AAA) - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 DYD3_k127_458475_2 1219049.SP5_097_00610 1.009e-07 53.0 COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,2U0A3@28211|Alphaproteobacteria,2K5YI@204457|Sphingomonadales 204457|Sphingomonadales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD3_k127_458475_0 700598.Niako_5853 1.732e-74 263.0 COG2207@1|root,COG2207@2|Bacteria 2|Bacteria K Transcriptional regulator - - - - - - - - - - - - HTH_18,HTH_AraC DYD3_k127_4588823_1 471854.Dfer_2946 1.328e-57 203.0 COG0783@1|root,COG0783@2|Bacteria,4NNG4@976|Bacteroidetes,47QQ4@768503|Cytophagia 976|Bacteroidetes P Belongs to the Dps family - - - ko:K04047 - - - - ko00000,ko03036 - - - Ferritin DYD3_k127_4588823_0 1380355.JNIJ01000016_gene5743 1.819e-160 511.0 COG0596@1|root,COG0596@2|Bacteria,1MWT6@1224|Proteobacteria,2TSCE@28211|Alphaproteobacteria,3JSZA@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_4588823_2 391596.PBAL39_22290 2.179e-45 170.0 COG1651@1|root,COG1651@2|Bacteria,4NQ9P@976|Bacteroidetes,1ISGX@117747|Sphingobacteriia 976|Bacteroidetes O PFAM DSBA-like thioredoxin domain - - - - - - - - - - - - Thioredoxin_4 DYD3_k127_4588823_3 1229487.AMYW01000026_gene2712 2.895e-15 76.0 COG2353@1|root,COG2353@2|Bacteria,4NNMD@976|Bacteroidetes,1I18S@117743|Flavobacteriia,2NSUY@237|Flavobacterium 976|Bacteroidetes S Belongs to the UPF0312 family - - - - - - - - - - - - YceI DYD3_k127_4590762_0 700598.Niako_5470 2.045e-205 642.0 COG0006@1|root,COG0006@2|Bacteria,4NG40@976|Bacteroidetes,1IPMC@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the peptidase M24B family pepP - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - AMP_N,Peptidase_M24 DYD3_k127_4590762_2 700598.Niako_5469 1.444e-94 316.0 COG1183@1|root,COG1183@2|Bacteria,4NNUZ@976|Bacteroidetes,1ISNC@117747|Sphingobacteriia 976|Bacteroidetes I Belongs to the CDP-alcohol phosphatidyltransferase class-I family pssA - 2.7.8.8 ko:K17103 ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110 M00093 R01800 RC00002,RC00017,RC02795 ko00000,ko00001,ko00002,ko01000 - - - CDP-OH_P_transf DYD3_k127_4590762_4 700598.Niako_5468 1.199e-38 145.0 COG1828@1|root,COG1828@2|Bacteria,4NV1M@976|Bacteroidetes,1ITNI@117747|Sphingobacteriia 976|Bacteroidetes F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL purS - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - PurS DYD3_k127_4590762_1 700598.Niako_5466 3.407e-111 362.0 COG0313@1|root,COG0313@2|Bacteria,4NFQM@976|Bacteroidetes,1IPC1@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA rsmI - 2.1.1.198 ko:K07056 - - - - ko00000,ko01000,ko03009 - - - TP_methylase DYD3_k127_4590762_3 700598.Niako_5465 1.642e-45 169.0 295Z7@1|root,33C4F@2|Bacteria 2|Bacteria S Putative beta-lactamase-inhibitor-like, PepSY-like - - - - - - - - - - - - PepSY_like DYD3_k127_4607349_3 1220534.B655_1439 7.782e-19 89.0 COG0028@1|root,arCOG01998@2157|Archaea,2XT5F@28890|Euryarchaeota,23NN4@183925|Methanobacteria 183925|Methanobacteria E Acetolactate synthase, large subunit ilvB1 - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N DYD3_k127_4607349_1 925409.KI911562_gene2982 4.264e-57 201.0 COG0629@1|root,COG0629@2|Bacteria,4NVAN@976|Bacteroidetes 976|Bacteroidetes L single-stranded DNA-binding protein - - - ko:K03111 ko03030,ko03430,ko03440,map03030,map03430,map03440 - - - ko00000,ko00001,ko03029,ko03032,ko03400 - - - SSB DYD3_k127_4607349_0 700598.Niako_5050 9.279e-161 517.0 28KFX@1|root,2ZA1W@2|Bacteria,4P3W2@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4607349_2 1120965.AUBV01000005_gene1683 5.336e-23 100.0 COG0673@1|root,COG0673@2|Bacteria,4NF4Q@976|Bacteroidetes,47M9C@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_4608140_0 761193.Runsl_1967 8.226e-219 689.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47MYR@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4608140_1 1185876.BN8_01454 2.412e-47 173.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4608911_0 760192.Halhy_0634 2.568e-100 344.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IW1C@117747|Sphingobacteriia 976|Bacteroidetes T Y_Y_Y domain - - - - - - - - - - - - His_kinase,Reg_prop,Y_Y_Y DYD3_k127_4608911_1 1123277.KB893174_gene5928 8.648e-64 227.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes,47PTI@768503|Cytophagia 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_4608911_2 1095769.CAHF01000013_gene3177 8.251e-29 126.0 COG4757@1|root,COG4757@2|Bacteria,1Q1V6@1224|Proteobacteria,2VKQ9@28216|Betaproteobacteria,477R3@75682|Oxalobacteraceae 28216|Betaproteobacteria S Serine aminopeptidase, S33 - - - - - - - - - - - - Hydrolase_4 DYD3_k127_4612687_0 1265503.KB905176_gene4099 2.229e-40 162.0 COG2199@1|root,COG3292@1|root,COG3292@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,1T2D4@1236|Gammaproteobacteria 1236|Gammaproteobacteria T response regulator - - - - - - - - - - - - CHASE3,GAF_2,GGDEF,HATPase_c,HisKA,Response_reg DYD3_k127_4612687_1 1506583.JQJY01000005_gene2042 2.294e-25 114.0 COG3637@1|root,COG3637@2|Bacteria,4NR9K@976|Bacteroidetes,1I34P@117743|Flavobacteriia,2NWCZ@237|Flavobacterium 976|Bacteroidetes M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl_2 DYD3_k127_4632372_3 700598.Niako_0912 1.996e-97 323.0 COG0457@1|root,COG0457@2|Bacteria,4NXQQ@976|Bacteroidetes 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - - DYD3_k127_4632372_0 700598.Niako_0913 2.678e-177 565.0 COG0534@1|root,COG0534@2|Bacteria,4NFIR@976|Bacteroidetes,1IXI6@117747|Sphingobacteriia 976|Bacteroidetes V MatE - - - - - - - - - - - - MatE DYD3_k127_4632372_5 449673.BACSTE_03380 9.018e-37 146.0 COG0742@1|root,COG0742@2|Bacteria,4NM7J@976|Bacteroidetes,2FSR0@200643|Bacteroidia,4AKMK@815|Bacteroidaceae 976|Bacteroidetes L RNA methyltransferase, RsmD family rsmD - 2.1.1.171 ko:K08316 - - R07234 RC00003 ko00000,ko01000,ko03009 - - - Cons_hypoth95 DYD3_k127_4632372_4 700598.Niako_0916 1.325e-96 320.0 COG0132@1|root,COG0132@2|Bacteria,4NGKI@976|Bacteroidetes,1IS5T@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring bioD - 6.3.3.3 ko:K01935 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R03182 RC00868 ko00000,ko00001,ko00002,ko01000 - - - AAA_26 DYD3_k127_4632372_6 504472.Slin_5361 6.047e-22 102.0 COG0212@1|root,COG0212@2|Bacteria,4NM97@976|Bacteroidetes,47Q5G@768503|Cytophagia 976|Bacteroidetes H 5-formyltetrahydrofolate cyclo-ligase family ygfA - 6.3.3.2 ko:K01934 ko00670,ko01100,map00670,map01100 - R02301 RC00183 ko00000,ko00001,ko01000 - - - 5-FTHF_cyc-lig DYD3_k127_4632372_1 700598.Niako_0918 1.972e-114 374.0 COG1663@1|root,COG1663@2|Bacteria,4NE2I@976|Bacteroidetes,1IQ8A@117747|Sphingobacteriia 976|Bacteroidetes M Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) lpxK - 2.7.1.130 ko:K00912 ko00540,ko01100,map00540,map01100 M00060 R04657 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - - LpxK DYD3_k127_464557_1 1123248.KB893315_gene3032 1.601e-122 397.0 COG0337@1|root,COG0337@2|Bacteria,4NHE3@976|Bacteroidetes,1IWSU@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate aroB - 4.2.3.4 ko:K01735 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03083 RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase DYD3_k127_464557_2 1123248.KB893315_gene3031 3.545e-97 326.0 COG0382@1|root,COG0382@2|Bacteria,4NIXM@976|Bacteroidetes,1IWMD@117747|Sphingobacteriia 976|Bacteroidetes H UbiA prenyltransferase family - - 2.5.1.39 ko:K03179 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R05000,R05615 RC00209,RC02895 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA DYD3_k127_464557_0 485918.Cpin_7264 2.793e-179 565.0 COG1099@1|root,COG1099@2|Bacteria,4NHVD@976|Bacteroidetes,1IRE3@117747|Sphingobacteriia 976|Bacteroidetes S Hydrolase TatD - - - ko:K07051 - - - - ko00000 - - - TatD_DNase DYD3_k127_464557_3 1123248.KB893315_gene3029 2.188e-86 295.0 28JEH@1|root,2Z98N@2|Bacteria,4NJHC@976|Bacteroidetes,1IUWB@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_464557_4 1123277.KB893176_gene3706 7.473e-70 240.0 COG0823@1|root,COG0823@2|Bacteria,4NM2C@976|Bacteroidetes,47NM2@768503|Cytophagia 976|Bacteroidetes U Involved in the tonB-independent uptake of proteins - - - - - - - - - - - - - DYD3_k127_4651410_2 700598.Niako_5652 4.155e-96 321.0 2DBUB@1|root,2ZB53@2|Bacteria,4NMWS@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4651410_6 700598.Niako_5651 1.074e-48 177.0 COG0216@1|root,COG0216@2|Bacteria,4PPXH@976|Bacteroidetes,1J13C@117747|Sphingobacteriia 976|Bacteroidetes J RF-1 domain yaeJ - - ko:K15034 - - - - ko00000,ko03012 - - - RF-1 DYD3_k127_4651410_4 700598.Niako_5650 8.364e-76 257.0 COG1490@1|root,COG1490@2|Bacteria,4NNFF@976|Bacteroidetes,1ISI6@117747|Sphingobacteriia 976|Bacteroidetes J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality dtd GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - ko:K07560 - - - - ko00000,ko01000,ko03016 - - - Tyr_Deacylase DYD3_k127_4651410_5 926556.Echvi_0096 1.418e-51 185.0 COG1694@1|root,COG1694@2|Bacteria,4NQ3H@976|Bacteroidetes,47QEV@768503|Cytophagia 976|Bacteroidetes S PFAM MazG nucleotide pyrophosphohydrolase ypjD - - - - - - - - - - - MazG DYD3_k127_4651410_0 700598.Niako_5647 1.857e-280 866.0 COG0423@1|root,COG0423@2|Bacteria,4NE1C@976|Bacteroidetes,1IPE0@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the attachment of glycine to tRNA(Gly) glyQS - 6.1.1.14 ko:K01880 ko00970,map00970 M00359,M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - HGTP_anticodon,tRNA-synt_2b DYD3_k127_4651410_1 700598.Niako_5645 2.07e-127 411.0 COG1018@1|root,COG1018@2|Bacteria,4PN6Y@976|Bacteroidetes 976|Bacteroidetes C Oxidoreductase FAD-binding domain - - 1.17.1.1 ko:K00523,ko:K05784 ko00362,ko00364,ko00520,ko00622,ko01100,ko01120,ko01220,map00362,map00364,map00520,map00622,map01100,map01120,map01220 M00551 R03391,R03392,R05290,R05291,R05428,R05621,R05622,R05665,R08100,R08101,R08108,R08109,R08110 RC00230,RC00270,RC01378,RC01450,RC01910 br01602,ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_6,Fer2,NAD_binding_1 DYD3_k127_4651410_3 313598.MED152_06635 3.614e-94 335.0 COG4447@1|root,COG4447@2|Bacteria,4NEJ8@976|Bacteroidetes,1I077@117743|Flavobacteriia,3VX6H@52959|Polaribacter 976|Bacteroidetes S Pkd domain containing protein - - - - - - - - - - - - FlgD_ig,MAM,TIG,fn3 DYD3_k127_4655728_0 700598.Niako_5088 0.0 1658.0 COG1747@1|root,COG1747@2|Bacteria,4NEB8@976|Bacteroidetes,1INS4@117747|Sphingobacteriia 976|Bacteroidetes S Motility related/secretion protein sprA - - - - - - - - - - - SprA_N DYD3_k127_4656636_1 661478.OP10G_3363 2.566e-49 190.0 COG1520@1|root,COG1520@2|Bacteria 2|Bacteria S amino acid activation for nonribosomal peptide biosynthetic process - - 1.1.2.6,2.7.11.1 ko:K05889,ko:K12132 - - R03136 - ko00000,ko01000,ko01001 - - - Cytochrome_CBB3,DUF1863,PQQ,PQQ_2,PQQ_3,Pkinase DYD3_k127_4656636_2 1541065.JRFE01000051_gene4922 4.34e-21 106.0 COG2911@1|root,COG3170@1|root,COG4935@1|root,COG5276@1|root,COG2911@2|Bacteria,COG3170@2|Bacteria,COG4935@2|Bacteria,COG5276@2|Bacteria,1G8F1@1117|Cyanobacteria,3VMVS@52604|Pleurocapsales 1117|Cyanobacteria M Domain of unknown function (DUF4347) - - - - - - - - - - - - DUF4347 DYD3_k127_4656636_3 700598.Niako_1233 7.941e-12 77.0 COG3291@1|root,COG4733@1|root,COG3291@2|Bacteria,COG4733@2|Bacteria,4NRYE@976|Bacteroidetes 976|Bacteroidetes Q TIGRFAM gliding motility-associated C-terminal domain - - - - - - - - - - - - CHU_C,SprB DYD3_k127_4656636_0 700598.Niako_3946 7.374e-188 590.0 COG1702@1|root,COG1702@2|Bacteria,4NDYV@976|Bacteroidetes,1INQV@117747|Sphingobacteriia 976|Bacteroidetes T Phosphate starvation-inducible protein PhoH phoH - - ko:K06217 - - - - ko00000 - - - PhoH DYD3_k127_4672030_1 700598.Niako_6077 3.375e-154 488.0 COG1012@1|root,COG2030@1|root,COG1012@2|Bacteria,COG2030@2|Bacteria,4NI68@976|Bacteroidetes,1IV6E@117747|Sphingobacteriia 976|Bacteroidetes CI MaoC like domain paaN - 1.2.1.91,3.3.2.12 ko:K02618 ko00360,ko01120,map00360,map01120 - R09820,R09836 RC00080,RC02667 ko00000,ko00001,ko01000 - - - Aldedh,DUF1569,MaoC_dehydratas DYD3_k127_4672030_3 700598.Niako_6078 1.036e-124 404.0 COG1024@1|root,COG1024@2|Bacteria,4NEH4@976|Bacteroidetes,1IRSU@117747|Sphingobacteriia 976|Bacteroidetes I COG1024 Enoyl-CoA hydratase carnithine racemase - - 4.2.1.18 ko:K13766 ko00280,ko01100,map00280,map01100 M00036 R02085 RC02416 ko00000,ko00001,ko00002,ko01000 - - - ECH_1 DYD3_k127_4672030_4 700598.Niako_6079 9.266e-98 323.0 COG0122@1|root,COG0122@2|Bacteria,4NMMI@976|Bacteroidetes,1IU7D@117747|Sphingobacteriia 976|Bacteroidetes L PFAM HhH-GPD superfamily base excision DNA repair protein - - 3.2.2.21 ko:K01247 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD DYD3_k127_4672030_2 700598.Niako_6081 2.798e-140 447.0 COG1028@1|root,COG1028@2|Bacteria,4NEAI@976|Bacteroidetes,1IPN9@117747|Sphingobacteriia 976|Bacteroidetes IQ COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) fabG - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD3_k127_4672030_0 1122605.KB893628_gene4550 7.481e-175 556.0 COG2133@1|root,COG2133@2|Bacteria,4NDV1@976|Bacteroidetes 976|Bacteroidetes G Glucose Sorbosone dehydrogenase - - - - - - - - - - - - GSDH DYD3_k127_4672030_5 700598.Niako_6082 1.54e-11 64.0 COG0318@1|root,COG0318@2|Bacteria,4PKJY@976|Bacteroidetes,1INYG@117747|Sphingobacteriia 976|Bacteroidetes IQ PFAM GH3 auxin-responsive promoter - - - - - - - - - - - - GH3 DYD3_k127_467372_3 700598.Niako_6867 3.716e-07 51.0 COG0473@1|root,COG0473@2|Bacteria,4NGUA@976|Bacteroidetes 976|Bacteroidetes CE Isocitrate isopropylmalate dehydrogenase - - 1.1.1.42,1.1.1.85 ko:K00031,ko:K00052 ko00020,ko00290,ko00480,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00290,map00480,map00660,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 M00009,M00010,M00173,M00432,M00535,M00740 R00267,R00268,R00994,R01899,R04426,R10052 RC00001,RC00084,RC00114,RC00417,RC00626,RC02801,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh DYD3_k127_467372_1 700598.Niako_6868 4.219e-77 259.0 COG2967@1|root,COG2967@2|Bacteria,4NNRA@976|Bacteroidetes,1ISSC@117747|Sphingobacteriia 976|Bacteroidetes P protein affecting Mg2 Co2 transport apaG - - ko:K06195 - - - - ko00000 - - - DUF525 DYD3_k127_467372_0 929713.NIASO_13035 2.078e-310 963.0 COG1297@1|root,COG1297@2|Bacteria,4NEIY@976|Bacteroidetes,1IP8J@117747|Sphingobacteriia 976|Bacteroidetes S OPT oligopeptide transporter protein - - - - - - - - - - - - OPT DYD3_k127_467372_2 700598.Niako_6869 6.787e-74 258.0 COG3104@1|root,COG3104@2|Bacteria,4NE8R@976|Bacteroidetes,1IP88@117747|Sphingobacteriia 976|Bacteroidetes E amino acid peptide transporter - - - ko:K03305 - - - - ko00000 2.A.17 - - PTR2 DYD3_k127_4682946_2 700598.Niako_2702 1.309e-51 192.0 COG3712@1|root,COG3712@2|Bacteria,4NE6N@976|Bacteroidetes 976|Bacteroidetes PT COG3712 Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_4682946_1 700598.Niako_2705 3.054e-60 214.0 COG1595@1|root,COG1595@2|Bacteria,4NV4N@976|Bacteroidetes,1IYRF@117747|Sphingobacteriia 976|Bacteroidetes K COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_4682946_0 485918.Cpin_4405 5.983e-196 623.0 COG2133@1|root,COG2133@2|Bacteria,4NF0B@976|Bacteroidetes,1IVAH@117747|Sphingobacteriia 976|Bacteroidetes G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - CBM_6,GSDH,Ig_2,Malectin,PKD,VCBS,fn3 DYD3_k127_4682946_5 485918.Cpin_3523 2.13e-07 53.0 COG1961@1|root,COG1961@2|Bacteria,4NFJA@976|Bacteroidetes,1IW8Y@117747|Sphingobacteriia 976|Bacteroidetes L resolvase domain protein - - - - - - - - - - - - Recombinase,Resolvase,Zn_ribbon_recom DYD3_k127_4682946_3 743722.Sph21_4600 1.462e-51 184.0 COG0640@1|root,COG0640@2|Bacteria,4NSDX@976|Bacteroidetes,1IXV7@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20,HTH_5 DYD3_k127_4702106_2 1270193.JARP01000001_gene3071 1.141e-33 133.0 COG4219@1|root,COG4219@2|Bacteria,4NDWS@976|Bacteroidetes,1I3KX@117743|Flavobacteriia,2NY93@237|Flavobacterium 976|Bacteroidetes KT BlaR1 peptidase M56 - - - - - - - - - - - - Peptidase_M56 DYD3_k127_4702106_3 266762.HQ36_03555 0.0002493 52.0 COG3209@1|root,COG3209@2|Bacteria,4NXM5@976|Bacteroidetes,2FXX2@200643|Bacteroidia 976|Bacteroidetes M COG3209 Rhs family protein - - - - - - - - - - - - - DYD3_k127_4702106_0 1166018.FAES_0327 7.126e-75 253.0 COG2346@1|root,COG2346@2|Bacteria,4NPJ3@976|Bacteroidetes,47Q5H@768503|Cytophagia 976|Bacteroidetes S Bacterial-like globin - - - ko:K06886 - - - - ko00000 - - - Bac_globin DYD3_k127_4702106_1 1150600.ADIARSV_2391 2.213e-39 151.0 COG1733@1|root,COG1733@2|Bacteria,4NSTA@976|Bacteroidetes,1IT8Q@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - - - - - - - - - - HxlR DYD3_k127_4702244_2 1123277.KB893173_gene1729 6.874e-63 220.0 COG2128@1|root,COG2128@2|Bacteria,4P1M7@976|Bacteroidetes 976|Bacteroidetes S Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - - - - - - - - - - - DYD3_k127_4702244_0 485917.Phep_1213 8.095e-183 579.0 COG4941@1|root,COG4941@2|Bacteria,4NGCS@976|Bacteroidetes,1IPXA@117747|Sphingobacteriia 976|Bacteroidetes K RNA polymerase sigma factor - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2 DYD3_k127_4702244_3 700598.Niako_3915 6.188e-45 166.0 COG3795@1|root,COG3795@2|Bacteria,4NS2I@976|Bacteroidetes,1ITPC@117747|Sphingobacteriia 976|Bacteroidetes S PFAM YCII-related domain - - - - - - - - - - - - YCII DYD3_k127_4702244_1 1122176.KB903553_gene3675 2.151e-145 471.0 COG0673@1|root,COG0673@2|Bacteria,4NFGY@976|Bacteroidetes,1IR4M@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_4708167_0 925409.KI911562_gene540 2.849e-202 640.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IQM0@117747|Sphingobacteriia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug Domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_4708167_1 509635.N824_01630 8.522e-60 211.0 COG0642@1|root,COG0745@1|root,COG3292@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NDXU@976|Bacteroidetes,1IR3V@117747|Sphingobacteriia 976|Bacteroidetes T Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_47104_1 1123248.KB893324_gene1706 6.514e-92 306.0 COG1413@1|root,COG2010@1|root,COG2133@1|root,COG1413@2|Bacteria,COG2010@2|Bacteria,COG2133@2|Bacteria,4NH6B@976|Bacteroidetes,1IV9R@117747|Sphingobacteriia 976|Bacteroidetes C E-Z type HEAT repeats - - - - - - - - - - - - Cytochrom_C,GSDH,HEAT_2 DYD3_k127_47104_0 485918.Cpin_4200 6.887e-294 910.0 COG1132@1|root,COG1132@2|Bacteria,4NEE7@976|Bacteroidetes,1IQSH@117747|Sphingobacteriia 976|Bacteroidetes V SMART ATPase, AAA type, core - - - - - - - - - - - - ABC_membrane,ABC_tran DYD3_k127_47104_2 1185876.BN8_01436 3.346e-59 212.0 COG0577@1|root,COG0577@2|Bacteria,4NGQQ@976|Bacteroidetes,47TDY@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4712979_1 700598.Niako_4595 5.01e-62 216.0 COG1595@1|root,COG1595@2|Bacteria,4NNBY@976|Bacteroidetes,1IS89@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_4712979_0 700598.Niako_4596 8.791e-81 280.0 COG3712@1|root,COG3712@2|Bacteria,4NMA2@976|Bacteroidetes,1IS2K@117747|Sphingobacteriia 976|Bacteroidetes PT PFAM FecR protein - - - - - - - - - - - - DUF4974,FecR DYD3_k127_4712979_2 700598.Niako_4597 1.55e-54 197.0 COG3078@1|root,COG3078@2|Bacteria,4NIGK@976|Bacteroidetes,1INXJ@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2 DYD3_k127_4713539_1 700598.Niako_0535 2.168e-190 600.0 COG3537@1|root,COG3537@2|Bacteria,4NDYB@976|Bacteroidetes,1IQU8@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolase family 92 - - - - - - - - - - - - Glyco_hydro_92 DYD3_k127_4713539_0 700598.Niako_0532 0.0 1264.0 COG3537@1|root,COG3537@2|Bacteria,4NDYB@976|Bacteroidetes,1IRB7@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycosyl hydrolase family 92 - - - - - - - - - - - - CBM-like,Glyco_hydro_92 DYD3_k127_4718885_1 1123276.KB893245_gene1455 4.075e-66 237.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NTJ@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_4718885_2 509635.N824_16125 1.641e-53 192.0 COG3620@1|root,COG3620@2|Bacteria,4PNCJ@976|Bacteroidetes 976|Bacteroidetes K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - - DYD3_k127_4718885_0 1454007.JAUG01000001_gene3732 1.677e-84 284.0 COG2184@1|root,COG2184@2|Bacteria,4NM5F@976|Bacteroidetes 976|Bacteroidetes D Fic/DOC family - - - - - - - - - - - - Fic DYD3_k127_4718885_3 313606.M23134_05174 1.996e-48 181.0 COG2207@1|root,COG2207@2|Bacteria,4NHA5@976|Bacteroidetes 976|Bacteroidetes K AraC family - - - - - - - - - - - - HTH_18 DYD3_k127_4727433_3 1123248.KB893315_gene3090 1.109e-124 406.0 COG1819@1|root,COG1819@2|Bacteria,4NIX4@976|Bacteroidetes,1IWR9@117747|Sphingobacteriia 976|Bacteroidetes CG UDP-glucoronosyl and UDP-glucosyl transferase - - - - - - - - - - - - UDPGT DYD3_k127_4727433_1 700598.Niako_3673 3.168e-172 546.0 COG0673@1|root,COG0673@2|Bacteria,4NEQB@976|Bacteroidetes,1IPA3@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase domain protein yvaA - 1.1.1.371 ko:K16044 ko00562,ko01120,map00562,map01120 - R09954 RC00182 ko00000,ko00001,ko01000 - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_4727433_2 700598.Niako_3676 3.519e-153 490.0 COG0318@1|root,COG0318@2|Bacteria,4NDXK@976|Bacteroidetes,1IPM0@117747|Sphingobacteriia 976|Bacteroidetes IQ Acyl-protein synthetase, LuxE - - - - - - - - - - - - LuxE DYD3_k127_4727433_4 700598.Niako_3678 3.665e-109 359.0 COG0382@1|root,COG0382@2|Bacteria 2|Bacteria H Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate ispH - 1.17.7.4 ko:K03527 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05884,R08210 RC01137,RC01487 ko00000,ko00001,ko00002,ko01000 - - - UbiA DYD3_k127_4727433_0 700598.Niako_3679 2.735e-213 665.0 COG1363@1|root,COG1363@2|Bacteria,4NG97@976|Bacteroidetes,1INSP@117747|Sphingobacteriia 976|Bacteroidetes G peptidase M42 frvX - - - - - - - - - - - Peptidase_M42 DYD3_k127_4730692_1 1185876.BN8_01329 2.558e-149 479.0 COG0673@1|root,COG0673@2|Bacteria,4NE75@976|Bacteroidetes,47K0H@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold gfo - 1.1.99.28 ko:K00118 - - - - ko00000,ko01000 - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_4730692_2 760192.Halhy_5068 5.485e-117 383.0 COG0656@1|root,COG0656@2|Bacteria,4NK47@976|Bacteroidetes,1IWTP@117747|Sphingobacteriia 976|Bacteroidetes S PFAM aldo keto reductase - - - - - - - - - - - - Aldo_ket_red DYD3_k127_4730692_0 700598.Niako_1201 1.358e-279 880.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INSB@117747|Sphingobacteriia 976|Bacteroidetes V TIGRFAM Acidobacterial duplicated orphan permease - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_4730692_3 700598.Niako_5281 5.594e-48 174.0 COG2346@1|root,COG2346@2|Bacteria,4NQCV@976|Bacteroidetes,1IU4Q@117747|Sphingobacteriia 976|Bacteroidetes S Pfam Bacterial-like globin - - - ko:K06886 - - - - ko00000 - - - Bac_globin DYD3_k127_4759273_6 1279017.AQYJ01000029_gene3400 2.232e-07 55.0 2EJ6D@1|root,33CXK@2|Bacteria,1NHGW@1224|Proteobacteria,1SGZR@1236|Gammaproteobacteria,46C71@72275|Alteromonadaceae 1236|Gammaproteobacteria - - - - - - - - - - - - - - - DYD3_k127_4759273_5 929556.Solca_1035 1.953e-62 222.0 2E5BX@1|root,3303Z@2|Bacteria,4NYIF@976|Bacteroidetes,1IXZG@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4759273_4 485918.Cpin_3305 6.329e-69 243.0 COG2207@1|root,COG2207@2|Bacteria 2|Bacteria K Transcriptional regulator - - - - - - - - - - - - HTH_18 DYD3_k127_4759273_3 1094466.KQS_13265 1.322e-69 254.0 COG3209@1|root,COG5295@1|root,COG3209@2|Bacteria,COG5295@2|Bacteria,4NJTK@976|Bacteroidetes,1HZNB@117743|Flavobacteriia,2NX0A@237|Flavobacterium 976|Bacteroidetes UW COG3209 Rhs family protein - - - - - - - - - - - - Peptidase_S74 DYD3_k127_4759273_1 700598.Niako_5773 4.261e-165 528.0 COG1940@1|root,COG1940@2|Bacteria,4NFZ1@976|Bacteroidetes,1IPDD@117747|Sphingobacteriia 976|Bacteroidetes GK ROK family - - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HTH_24,ROK DYD3_k127_4759273_0 525373.HMPREF0766_10275 2.398e-202 647.0 COG4198@1|root,COG4198@2|Bacteria,4P1EI@976|Bacteroidetes,1IVNW@117747|Sphingobacteriia 976|Bacteroidetes S Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_4759273_2 1122605.KB893646_gene117 5.851e-105 347.0 COG4206@1|root,COG4206@2|Bacteria,4PHXJ@976|Bacteroidetes,1IX3K@117747|Sphingobacteriia 976|Bacteroidetes H Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarbopepD_reg_2,Plug DYD3_k127_476568_5 468059.AUHA01000004_gene2099 1.262e-49 179.0 COG0277@1|root,COG0277@2|Bacteria,4NIAB@976|Bacteroidetes,1IRYQ@117747|Sphingobacteriia 976|Bacteroidetes C FAD linked oxidase domain protein - - - - - - - - - - - - ALO,FAD_binding_4 DYD3_k127_476568_4 1458427.BAWN01000013_gene903 3.634e-105 349.0 28HAW@1|root,2Z7N4@2|Bacteria,1R5JH@1224|Proteobacteria,2VM86@28216|Betaproteobacteria,4AH0K@80864|Comamonadaceae 28216|Betaproteobacteria S KilA-N - - - - - - - - - - - - KilA-N DYD3_k127_476568_1 700598.Niako_0944 6.302e-160 507.0 COG0031@1|root,COG0031@2|Bacteria,4NF7E@976|Bacteroidetes,1IPV7@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the cysteine synthase cystathionine beta- synthase family cysM - 2.5.1.47 ko:K12339 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03132,R03601,R04859 RC00020,RC02814,RC02821,RC02876 ko00000,ko00001,ko00002,ko01000 - - - PALP DYD3_k127_476568_2 1150600.ADIARSV_3377 2.717e-114 376.0 COG1045@1|root,COG1045@2|Bacteria,4NGZ7@976|Bacteroidetes,1IPAM@117747|Sphingobacteriia 976|Bacteroidetes E Serine acetyltransferase cysE - 2.3.1.30 ko:K00640 ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111 M00021 R00586 RC00004,RC00041 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,SATase_N DYD3_k127_476568_0 700598.Niako_1583 7.773e-218 679.0 COG0183@1|root,COG0183@2|Bacteria,4NE3Q@976|Bacteroidetes,1IP5F@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation phbA - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N DYD3_k127_476568_6 1279009.ADICEAN_04042 2.916e-37 150.0 COG3685@1|root,COG3685@2|Bacteria,4NMCT@976|Bacteroidetes,47QDP@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF892) - - - - - - - - - - - - DUF892 DYD3_k127_476568_3 700598.Niako_7231 2.786e-106 348.0 COG3279@1|root,COG3279@2|Bacteria,4NP17@976|Bacteroidetes 976|Bacteroidetes KT LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_476568_7 1123248.KB893334_gene2777 9.229e-06 49.0 COG2972@1|root,COG2972@2|Bacteria,4NRI4@976|Bacteroidetes,1IV8I@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_4766520_3 929703.KE386491_gene1112 1.258e-95 317.0 COG1574@1|root,COG1574@2|Bacteria,4NFMV@976|Bacteroidetes,47NMN@768503|Cytophagia 976|Bacteroidetes S Amidohydrolase family - - - - - - - - - - - - Amidohydro_3 DYD3_k127_4766520_0 929703.KE386491_gene1111 7.747e-104 342.0 COG1335@1|root,COG1335@2|Bacteria,4NHPC@976|Bacteroidetes,47NZX@768503|Cytophagia 976|Bacteroidetes Q Isochorismatase family - - - - - - - - - - - - Isochorismatase DYD3_k127_4766520_2 1453498.LG45_02760 2e-100 333.0 COG0596@1|root,COG0596@2|Bacteria,4NJQ8@976|Bacteroidetes,1I8JH@117743|Flavobacteriia,2NUPE@237|Flavobacterium 976|Bacteroidetes S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_6 DYD3_k127_4766520_1 485918.Cpin_5751 9.825e-103 340.0 COG2220@1|root,COG2220@2|Bacteria,4P6X9@976|Bacteroidetes 976|Bacteroidetes S Beta-lactamase superfamily domain - - - - - - - - - - - - Lactamase_B_3 DYD3_k127_4766520_4 743722.Sph21_4887 2.834e-71 243.0 COG0657@1|root,COG0657@2|Bacteria,4NFDH@976|Bacteroidetes,1IPVH@117747|Sphingobacteriia 976|Bacteroidetes I PFAM alpha beta hydrolase fold - - - - - - - - - - - - Abhydrolase_3 DYD3_k127_4775710_2 445961.IW15_14050 6.298e-37 147.0 COG3831@1|root,COG3831@2|Bacteria,4NJPG@976|Bacteroidetes,1I3DA@117743|Flavobacteriia,3ZNGZ@59732|Chryseobacterium 976|Bacteroidetes S by glimmer - - - - - - - - - - - - WGR DYD3_k127_4775710_0 714943.Mucpa_6007 2.199e-166 558.0 COG3831@1|root,COG3831@2|Bacteria,4NJPG@976|Bacteroidetes,1IW0V@117747|Sphingobacteriia 976|Bacteroidetes S Proposed nucleic acid binding domain - - - - - - - - - - - - WGR DYD3_k127_4775710_1 700598.Niako_6385 1.4e-79 268.0 COG0252@1|root,COG0252@2|Bacteria,4NRB3@976|Bacteroidetes,1IXAX@117747|Sphingobacteriia 976|Bacteroidetes EJ Asparaginase, N-terminal - - 3.5.1.1 ko:K01424 ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110 - R00485 RC00010,RC02798 ko00000,ko00001,ko01000 - - - Asparaginase DYD3_k127_478197_3 1089547.KB913013_gene562 6.947e-33 131.0 COG3503@1|root,COG3503@2|Bacteria,4NFAF@976|Bacteroidetes,47KPK@768503|Cytophagia 976|Bacteroidetes S Protein of unknown function (DUF1624) - - - - - - - - - - - - DUF1624 DYD3_k127_478197_0 1123248.KB893336_gene2833 5.049e-180 571.0 COG3391@1|root,COG3391@2|Bacteria,4NHHU@976|Bacteroidetes,1IW3W@117747|Sphingobacteriia 976|Bacteroidetes S amine dehydrogenase activity - - - - - - - - - - - - - DYD3_k127_478197_1 700598.Niako_3015 2.483e-162 547.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IPPI@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - HATPase_c,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_478197_2 700598.Niako_3014 8.103e-47 178.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_4797024_0 1267211.KI669560_gene295 9.146e-165 528.0 COG0841@1|root,COG0841@2|Bacteria,4NDZG@976|Bacteroidetes,1IQYT@117747|Sphingobacteriia 976|Bacteroidetes V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran DYD3_k127_4797024_2 700598.Niako_5807 7.327e-109 365.0 COG0845@1|root,COG0845@2|Bacteria,4NERP@976|Bacteroidetes,1IP8S@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - HlyD_D23 DYD3_k127_4797024_1 925409.KI911562_gene576 9.916e-150 486.0 COG1538@1|root,COG1538@2|Bacteria,4NF4X@976|Bacteroidetes,1IPWM@117747|Sphingobacteriia 976|Bacteroidetes MU PFAM Outer membrane efflux protein - - - - - - - - - - - - OEP DYD3_k127_4797024_3 700598.Niako_5809 2.68e-66 228.0 COG1309@1|root,COG1309@2|Bacteria,4NQ99@976|Bacteroidetes,1ISRH@117747|Sphingobacteriia 976|Bacteroidetes K PFAM Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N DYD3_k127_4800122_0 1227739.Hsw_0520 1.214e-101 364.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NK8Q@976|Bacteroidetes,47KVN@768503|Cytophagia 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_4820520_1 1255043.TVNIR_3515 2.372e-74 254.0 COG0262@1|root,COG0262@2|Bacteria,1R5UU@1224|Proteobacteria,1SEMI@1236|Gammaproteobacteria 1236|Gammaproteobacteria H RibD C-terminal domain - - - - - - - - - - - - RibD_C DYD3_k127_4820520_0 1121904.ARBP01000003_gene6298 5.924e-94 321.0 COG3391@1|root,COG3391@2|Bacteria,4PJDE@976|Bacteroidetes,47WI8@768503|Cytophagia 976|Bacteroidetes S amine dehydrogenase activity - - - - - - - - - - - - - DYD3_k127_4821427_3 1137281.D778_01000 6.792e-41 176.0 COG4886@1|root,COG4886@2|Bacteria,4NF17@976|Bacteroidetes,1IJNI@117743|Flavobacteriia 976|Bacteroidetes O Mycoplasma protein of unknown function, DUF285 - - - ko:K21449 - - - - ko00000,ko02000 1.B.40.2 - - DUF285,LRR_5 DYD3_k127_4821427_1 983544.Lacal_1184 2.864e-52 214.0 COG1520@1|root,COG1520@2|Bacteria,4NEVC@976|Bacteroidetes,1IJFE@117743|Flavobacteriia 976|Bacteroidetes S Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - - - - - - - - - - - DYD3_k127_4821427_2 1121288.AULL01000017_gene2409 7.132e-50 206.0 COG3291@1|root,COG3291@2|Bacteria,4PKMZ@976|Bacteroidetes,1I9DA@117743|Flavobacteriia 976|Bacteroidetes S TIGRFAM Por secretion system C-terminal sorting domain - - - - - - - - - - - - - DYD3_k127_4821427_4 762903.Pedsa_0462 6.041e-15 89.0 COG1520@1|root,COG3866@1|root,COG1520@2|Bacteria,COG3866@2|Bacteria,4NG8Z@976|Bacteroidetes,1IWEK@117747|Sphingobacteriia 976|Bacteroidetes G Pectate lyase - - - - - - - - - - - - - DYD3_k127_4821427_0 1250005.PHEL85_2190 6.7e-59 227.0 COG4886@1|root,COG4886@2|Bacteria,4NFXV@976|Bacteroidetes,1I00F@117743|Flavobacteriia 976|Bacteroidetes O Tetratricopeptide repeat - - - - - - - - - - - - Recep_L_domain,VCBS DYD3_k127_4821427_5 1121898.Q766_16365 8.751e-09 68.0 COG3291@1|root,COG3291@2|Bacteria,4PKMZ@976|Bacteroidetes,1I9DA@117743|Flavobacteriia,2P0DU@237|Flavobacterium 976|Bacteroidetes S TIGRFAM Por secretion system C-terminal sorting domain - - - - - - - - - - - - - DYD3_k127_4826505_0 700598.Niako_5039 1.968e-238 743.0 COG2866@1|root,COG2866@2|Bacteria,4NF5T@976|Bacteroidetes,1IQ41@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase M14, carboxypeptidase A - - - - - - - - - - - - Peptidase_M14 DYD3_k127_4826505_2 620914.JH621253_gene2611 5.635e-13 79.0 COG0457@1|root,COG2849@1|root,COG0457@2|Bacteria,COG2849@2|Bacteria,4NMDX@976|Bacteroidetes,1I51X@117743|Flavobacteriia,2YK65@290174|Aquimarina 976|Bacteroidetes S MORN repeat variant - - - - - - - - - - - - MORN_2,TPR_1,TPR_16,TPR_2,TPR_8 DYD3_k127_4826505_1 760192.Halhy_2333 5.342e-53 192.0 COG0477@1|root,COG2814@2|Bacteria,4NESW@976|Bacteroidetes,1IPF0@117747|Sphingobacteriia 976|Bacteroidetes EGP PFAM Major Facilitator Superfamily - - - ko:K08156 - - - - ko00000,ko02000 2.A.1.2.14 - - MFS_1,Sugar_tr DYD3_k127_4831491_1 700598.Niako_0717 1.169e-151 486.0 COG0578@1|root,COG0578@2|Bacteria,4NEYG@976|Bacteroidetes,1INV4@117747|Sphingobacteriia 976|Bacteroidetes C PFAM FAD dependent oxidoreductase glpA - 1.1.5.3 ko:K00111 ko00564,ko01110,map00564,map01110 - R00848 RC00029 ko00000,ko00001,ko01000 - - - DAO,DAO_C DYD3_k127_4831491_0 929556.Solca_0229 0.0 1167.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,4NDU8@976|Bacteroidetes,1IQ51@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_483310_3 700598.Niako_5798 1.324e-96 320.0 COG1040@1|root,COG1040@2|Bacteria,4NNI1@976|Bacteroidetes,1IRYV@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Phosphoribosyl transferase domain comF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - Pribosyltran DYD3_k127_483310_0 700598.Niako_5797 2.845e-258 801.0 COG1066@1|root,COG1066@2|Bacteria,4NEYA@976|Bacteroidetes,1IQC6@117747|Sphingobacteriia 976|Bacteroidetes O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function radA - - ko:K04485 - - - - ko00000,ko03400 - - - AAA_25,ATPase,ChlI DYD3_k127_483310_2 700598.Niako_5796 6.852e-106 347.0 COG2738@1|root,COG2738@2|Bacteria,4NDWG@976|Bacteroidetes,1IRD0@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Peptidase, membrane zinc metallopeptidase - - - ko:K06973 - - - - ko00000 - - - Zn_peptidase_2 DYD3_k127_483310_1 468059.AUHA01000002_gene1103 4.526e-154 500.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1J0IJ@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_4848518_1 926549.KI421517_gene807 2.657e-80 270.0 COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,4NH58@976|Bacteroidetes,47TQS@768503|Cytophagia 976|Bacteroidetes CG PQQ-like domain - - - - - - - - - - - - Cytochrome_CBB3,PQQ DYD3_k127_4848518_0 926549.KI421517_gene806 7.464e-170 544.0 COG0662@1|root,COG3837@1|root,COG0662@2|Bacteria,COG3837@2|Bacteria,4NHX8@976|Bacteroidetes,47UCJ@768503|Cytophagia 976|Bacteroidetes G Cupin domain - - - - - - - - - - - - Cupin_2 DYD3_k127_4848518_2 760192.Halhy_0495 6.34e-30 122.0 COG3828@1|root,COG3828@2|Bacteria 2|Bacteria N Trehalose utilisation - - - - - - - - - - - - ThuA DYD3_k127_4849748_1 700598.Niako_0713 6.783e-158 505.0 COG0438@1|root,COG0438@2|Bacteria,4NIWP@976|Bacteroidetes,1IR4B@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 DYD3_k127_4849748_0 700598.Niako_0712 1.986e-284 884.0 COG3408@1|root,COG3408@2|Bacteria,4NK6K@976|Bacteroidetes,1IUDA@117747|Sphingobacteriia 976|Bacteroidetes G N-terminal domain of (some) glycogen debranching enzymes - - - - - - - - - - - - GDE_C,GDE_N_bis DYD3_k127_4854122_1 1123248.KB893335_gene2898 5.699e-111 366.0 2DB7W@1|root,2Z7P1@2|Bacteria,4NJT9@976|Bacteroidetes,1IWWQ@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4331) - - - - - - - - - - - - DUF4331 DYD3_k127_4854122_0 760192.Halhy_0058 3.058e-189 602.0 COG0671@1|root,COG0671@2|Bacteria,4NIUA@976|Bacteroidetes,1IUZC@117747|Sphingobacteriia 976|Bacteroidetes I PAP2 superfamily - - - - - - - - - - - - PAP2 DYD3_k127_4854122_2 1123248.KB893334_gene2777 1.607e-65 230.0 COG2972@1|root,COG2972@2|Bacteria,4NRI4@976|Bacteroidetes,1IV8I@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_4875521_0 700598.Niako_4546 1.939e-51 188.0 2A95J@1|root,30YA2@2|Bacteria,4NP9E@976|Bacteroidetes,1ITH5@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4875521_1 468059.AUHA01000002_gene669 1.271e-29 130.0 COG3595@1|root,COG3595@2|Bacteria,4NEUW@976|Bacteroidetes,1ISUM@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_4882667_2 1123248.KB893381_gene1073 9.095e-51 187.0 COG1555@1|root,COG1555@2|Bacteria,4NE88@976|Bacteroidetes,1INMF@117747|Sphingobacteriia 976|Bacteroidetes L Psort location OuterMembrane, score - - - - - - - - - - - - HHH_3 DYD3_k127_4882667_1 700598.Niako_0169 2.837e-63 226.0 COG1555@1|root,COG1555@2|Bacteria,4NQC1@976|Bacteroidetes,1IZ9G@117747|Sphingobacteriia 976|Bacteroidetes L photosystem II stabilization - - - - - - - - - - - - - DYD3_k127_4882667_0 700598.Niako_0168 6.515e-86 287.0 COG0190@1|root,COG0190@2|Bacteria,4NEJP@976|Bacteroidetes,1IQDT@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate folD GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 ko:K01491 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R01220,R01655 RC00202,RC00578 ko00000,ko00001,ko00002,ko01000 - - - THF_DHG_CYH,THF_DHG_CYH_C DYD3_k127_4883001_4 700598.Niako_7340 1.773e-116 377.0 COG1619@1|root,COG1619@2|Bacteria,4NF5Q@976|Bacteroidetes,1IRG0@117747|Sphingobacteriia 976|Bacteroidetes V LD-carboxypeptidase ykfA - 3.4.17.13 ko:K01297 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_S66 DYD3_k127_4883001_2 700598.Niako_7341 2.967e-143 459.0 COG1619@1|root,COG1619@2|Bacteria,4NF5Q@976|Bacteroidetes,1IPHC@117747|Sphingobacteriia 976|Bacteroidetes V peptidase ykfA - 3.4.17.13 ko:K01297 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_S66 DYD3_k127_4883001_7 1121287.AUMU01000010_gene1735 6.321e-09 63.0 COG4278@1|root,COG4278@2|Bacteria,4NR5D@976|Bacteroidetes,1I30E@117743|Flavobacteriia,3ZPRT@59732|Chryseobacterium 976|Bacteroidetes H phenylacetate-CoA ligase activity - - - - - - - - - - - - - DYD3_k127_4883001_6 485918.Cpin_5309 1.529e-73 263.0 COG4278@1|root,COG4278@2|Bacteria,4NR5D@976|Bacteroidetes,1ITC3@117747|Sphingobacteriia 976|Bacteroidetes H phenylacetate-CoA ligase activity - - - - - - - - - - - - - DYD3_k127_4883001_1 700598.Niako_7343 9.039e-170 536.0 COG0583@1|root,COG0583@2|Bacteria,4NGZ5@976|Bacteroidetes,1INST@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator oxyR - - ko:K04761 ko02026,map02026 - - - ko00000,ko00001,ko03000 - - - HTH_1,LysR_substrate DYD3_k127_4883001_5 700598.Niako_7344 2.249e-104 345.0 COG1073@1|root,COG1073@2|Bacteria,4NGCE@976|Bacteroidetes 976|Bacteroidetes S Hydrolase with alpha beta fold protein - - - ko:K06889 - - - - ko00000 - - - Hydrolase_4 DYD3_k127_4883001_3 700598.Niako_7345 6.267e-142 454.0 COG1073@1|root,COG1073@2|Bacteria,4NGCE@976|Bacteroidetes,1IVZZ@117747|Sphingobacteriia 976|Bacteroidetes S Serine aminopeptidase, S33 - - - ko:K06889 - - - - ko00000 - - - Hydrolase_4 DYD3_k127_4883001_0 700598.Niako_7346 8.168e-260 807.0 COG3158@1|root,COG3158@2|Bacteria,4NET9@976|Bacteroidetes,1IP14@117747|Sphingobacteriia 976|Bacteroidetes P Transport of potassium into the cell kup - - ko:K03549 - - - - ko00000,ko02000 2.A.72 - - K_trans DYD3_k127_4884882_0 700598.Niako_1202 1.718e-228 732.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IRGG@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4888301_1 1123248.KB893328_gene869 2.182e-109 362.0 COG0327@1|root,COG0327@2|Bacteria,4NFJ3@976|Bacteroidetes,1IYFQ@117747|Sphingobacteriia 976|Bacteroidetes S NIF3 (NGG1p interacting factor 3) - - - - - - - - - - - - NIF3 DYD3_k127_4888301_2 700598.Niako_1136 7.196e-94 313.0 COG5061@1|root,COG5061@2|Bacteria,4NJWC@976|Bacteroidetes,1ITAZ@117747|Sphingobacteriia 976|Bacteroidetes OU Protein of unknown function (DUF3307) - - - - - - - - - - - - DUF3307 DYD3_k127_4888301_3 700598.Niako_1137 7.161e-74 254.0 COG1595@1|root,COG1595@2|Bacteria 2|Bacteria K DNA-templated transcription, initiation satD - - - - - - - - - - - SatD DYD3_k127_4888301_0 700598.Niako_1138 2.117e-219 681.0 COG0499@1|root,COG0499@2|Bacteria,4NEKE@976|Bacteroidetes,1IQTE@117747|Sphingobacteriia 976|Bacteroidetes H May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine ahcY GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 ko:K01251 ko00270,ko01100,map00270,map01100 M00035 R00192,R04936 RC00056,RC00069,RC01161,RC01243 ko00000,ko00001,ko00002,ko01000,ko01009,ko04147 - - - AdoHcyase,AdoHcyase_NAD DYD3_k127_4889757_2 1122605.KB893625_gene2294 3.596e-120 388.0 COG0207@1|root,COG0207@2|Bacteria,4NEC2@976|Bacteroidetes,1IRAS@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis thyA - 2.1.1.45 ko:K00560 ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523 M00053 R02101 RC00219,RC00332 ko00000,ko00001,ko00002,ko01000 - - - Thymidylat_synt DYD3_k127_4889757_4 700598.Niako_4591 4.938e-69 237.0 COG0262@1|root,COG0262@2|Bacteria,4NQ2Y@976|Bacteroidetes,1ISG3@117747|Sphingobacteriia 976|Bacteroidetes H Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis folA - 1.5.1.3 ko:K00287 ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523 M00126,M00840 R00936,R00937,R00939,R00940,R02235,R02236,R11765 RC00109,RC00110,RC00158 ko00000,ko00001,ko00002,ko01000 - - - 2TM,DHFR_1 DYD3_k127_4889757_3 700598.Niako_4590 4.267e-99 329.0 COG4122@1|root,COG4122@2|Bacteria,4NG1S@976|Bacteroidetes,1IXCE@117747|Sphingobacteriia 976|Bacteroidetes S Methyltransferase domain - - - - - - - - - - - - Methyltransf_24 DYD3_k127_4889757_0 700598.Niako_4589 5.683e-177 559.0 COG3288@1|root,COG3288@2|Bacteria,4NGH1@976|Bacteroidetes,1IPTC@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Alanine dehydrogenase PNT pntAA - 1.6.1.2 ko:K00324 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - AlaDh_PNT_C,AlaDh_PNT_N DYD3_k127_4889757_5 468059.AUHA01000003_gene1894 3.155e-49 177.0 COG3288@1|root,COG3288@2|Bacteria,4NT78@976|Bacteroidetes,1ITS9@117747|Sphingobacteriia 976|Bacteroidetes C 4TM region of pyridine nucleotide transhydrogenase, mitoch pntA - 1.6.1.2 ko:K00324 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - PNTB_4TM DYD3_k127_4889757_1 700598.Niako_4587 1.333e-139 447.0 COG1282@1|root,COG1282@2|Bacteria,4NHGZ@976|Bacteroidetes,1IPVT@117747|Sphingobacteriia 976|Bacteroidetes C The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane pntB - 1.6.1.2 ko:K00325 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - PNTB DYD3_k127_489321_5 395964.KE386496_gene830 1.125e-07 63.0 COG2755@1|root,COG2755@2|Bacteria,1R5F6@1224|Proteobacteria,2UPH3@28211|Alphaproteobacteria,3NCXM@45404|Beijerinckiaceae 28211|Alphaproteobacteria E lipolytic protein G-D-S-L family - - - - - - - - - - - - - DYD3_k127_489321_2 945713.IALB_2233 1.96e-98 337.0 COG3540@1|root,COG3540@2|Bacteria 2|Bacteria P PhoD-like phosphatase phoD - 3.1.3.1 ko:K01113 ko00790,ko01100,ko02020,map00790,map01100,map02020 M00126 R04620 RC00017 ko00000,ko00001,ko00002,ko01000 - - - PhoD DYD3_k127_489321_1 700598.Niako_5681 3.256e-119 391.0 COG5504@1|root,COG5504@2|Bacteria,4NFZP@976|Bacteroidetes,1IPUT@117747|Sphingobacteriia 976|Bacteroidetes O Gliding motility protein, GldB gldB - - - - - - - - - - - - DYD3_k127_489321_4 929556.Solca_3285 1.145e-15 78.0 COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,4NEXG@976|Bacteroidetes,1IPN6@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source nadE - 6.3.5.1 ko:K01950 ko00760,ko01100,map00760,map01100 M00115 R00257 RC00010,RC00100 ko00000,ko00001,ko00002,ko01000 - - - CN_hydrolase,NAD_synthase DYD3_k127_489321_0 700598.Niako_5680 8.273e-280 866.0 COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,4NEXG@976|Bacteroidetes,1IPN6@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source nadE - 6.3.5.1 ko:K01950 ko00760,ko01100,map00760,map01100 M00115 R00257 RC00010,RC00100 ko00000,ko00001,ko00002,ko01000 - - - CN_hydrolase,NAD_synthase DYD3_k127_4896864_1 700598.Niako_4468 7.647e-160 507.0 COG0842@1|root,COG0842@2|Bacteria,4NFM0@976|Bacteroidetes 976|Bacteroidetes V ABC-2 type transporter - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_3 DYD3_k127_4896864_0 700598.Niako_4469 1.126e-193 608.0 COG0842@1|root,COG0842@2|Bacteria,4NDU0@976|Bacteroidetes 976|Bacteroidetes V transport, permease protein ybhS - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_3 DYD3_k127_4896864_2 700598.Niako_4470 5.331e-136 435.0 COG1131@1|root,COG1131@2|Bacteria,4NFW9@976|Bacteroidetes,1IWS4@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1131 ABC-type multidrug transport system ATPase component - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_4896864_3 700598.Niako_4471 2.109e-99 327.0 COG1131@1|root,COG1131@2|Bacteria,4NFW9@976|Bacteroidetes,1IQRB@117747|Sphingobacteriia 976|Bacteroidetes V PFAM ABC transporter - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_4905786_2 1122176.KB903531_gene3140 2.896e-10 71.0 2DQSW@1|root,338FU@2|Bacteria 2|Bacteria S Domain of unknown function (DUF4249) - - - - - - - - - - - - DUF4249 DYD3_k127_4905786_0 1048983.EL17_01635 8.815e-115 385.0 COG1629@1|root,COG4771@2|Bacteria,4NF4B@976|Bacteroidetes,47MDX@768503|Cytophagia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_4906409_0 504472.Slin_0946 2.836e-165 539.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47M0S@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4906409_1 743722.Sph21_2610 6.371e-66 229.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INWS@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_4920296_1 700598.Niako_6516 1.452e-74 252.0 COG0009@1|root,COG0009@2|Bacteria,4NDZR@976|Bacteroidetes,1IQWM@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the SUA5 family yciO - - - - - - - - - - - Sua5_yciO_yrdC DYD3_k127_4920296_0 700598.Niako_6515 1.702e-166 526.0 COG2850@1|root,COG2850@2|Bacteria,4NEJI@976|Bacteroidetes,1IRY2@117747|Sphingobacteriia 976|Bacteroidetes S Cupin-like domain - - - - - - - - - - - - Cupin_8 DYD3_k127_4943101_0 269798.CHU_2061 1.878e-140 448.0 COG0708@1|root,COG0708@2|Bacteria,4NH0B@976|Bacteroidetes,47KKN@768503|Cytophagia 976|Bacteroidetes L Endonuclease/Exonuclease/phosphatase family xthA - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos DYD3_k127_4943101_3 376686.Fjoh_4051 8.131e-62 241.0 COG2911@1|root,COG3209@1|root,COG3291@1|root,COG3386@1|root,COG3391@1|root,COG2911@2|Bacteria,COG3209@2|Bacteria,COG3291@2|Bacteria,COG3386@2|Bacteria,COG3391@2|Bacteria,4NDZC@976|Bacteroidetes,1HY1V@117743|Flavobacteriia,2P0KB@237|Flavobacterium 976|Bacteroidetes M Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - - - - - - - - - - CHU_C,SprB DYD3_k127_4943101_2 1237149.C900_03131 1.37e-63 246.0 COG2353@1|root,COG2353@2|Bacteria,4NUV8@976|Bacteroidetes,47UW8@768503|Cytophagia 1237149.C900_03131|- S YceI-like domain - - - - - - - - - - - - - DYD3_k127_4943101_1 700598.Niako_2954 1.099e-114 374.0 COG1028@1|root,COG1028@2|Bacteria,4NFU6@976|Bacteroidetes,1IVVF@117747|Sphingobacteriia 976|Bacteroidetes IQ KR domain - - - - - - - - - - - - adh_short_C2 DYD3_k127_4943101_5 700598.Niako_2952 7.019e-47 173.0 COG2207@1|root,COG2207@2|Bacteria,4NS2N@976|Bacteroidetes,1IST2@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18,HTH_AraC DYD3_k127_4943101_4 880073.Calab_3278 2.796e-55 207.0 COG3049@1|root,COG3049@2|Bacteria 2|Bacteria M Linear amide C-N hydrolases, choloylglycine hydrolase family - - 3.5.1.24 ko:K01442 ko00120,ko00121,ko01100,map00120,map00121,map01100 - R02797,R03975,R03977,R04486,R04487,R05835 RC00090,RC00096 ko00000,ko00001,ko01000 - - - CBAH DYD3_k127_4943101_6 1469607.KK073768_gene393 4.815e-16 81.0 COG0667@1|root,COG0667@2|Bacteria,1G1XV@1117|Cyanobacteria,1HM9D@1161|Nostocales 1117|Cyanobacteria C PFAM aldo keto reductase - - - - - - - - - - - - Aldo_ket_red DYD3_k127_4946274_0 1267211.KI669560_gene2060 1.829e-248 782.0 COG4447@1|root,COG4447@2|Bacteria,4NESU@976|Bacteroidetes,1IV0S@117747|Sphingobacteriia 976|Bacteroidetes S Sortilin, neurotensin receptor 3, - - - - - - - - - - - - BNR,BNR_6,Sortilin-Vps10 DYD3_k127_4946274_1 700598.Niako_4451 1.995e-91 306.0 COG2849@1|root,COG2849@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF285,DUF2963,MORN_2 DYD3_k127_4954720_1 700598.Niako_0947 5.591e-56 199.0 COG0801@1|root,COG0801@2|Bacteria,4NGE8@976|Bacteroidetes,1ISW1@117747|Sphingobacteriia 976|Bacteroidetes H 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) folK - 2.7.6.3 ko:K00950 ko00790,ko01100,map00790,map01100 M00126,M00841 R03503 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HPPK,dNK DYD3_k127_4954720_0 700598.Niako_0948 2.612e-245 773.0 COG0616@1|root,COG0616@2|Bacteria,4NES1@976|Bacteroidetes,1IP6H@117747|Sphingobacteriia 976|Bacteroidetes OU signal peptide peptidase SppA, 67K type sppA - - ko:K04773 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S49 DYD3_k127_4969398_0 700598.Niako_2068 9.899e-304 946.0 COG1629@1|root,COG4771@2|Bacteria,4NEIG@976|Bacteroidetes,1IVBF@117747|Sphingobacteriia 2|Bacteria P Outer membrane protein beta-barrel family - - - - - - - - - - - - CarbopepD_reg_2,OMP_b-brl_3,Plug DYD3_k127_4969398_2 700598.Niako_2066 9.285e-100 328.0 COG0778@1|root,COG0778@2|Bacteria,4NMUE@976|Bacteroidetes,1ISQ6@117747|Sphingobacteriia 976|Bacteroidetes C nitroreductase ydjA - - - - - - - - - - - Nitroreductase DYD3_k127_4969398_3 700598.Niako_5014 6.553e-80 284.0 COG4585@1|root,COG4585@2|Bacteria,4NG0M@976|Bacteroidetes,1IS4A@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA_3,PAS_3,PAS_9 DYD3_k127_4969398_4 153721.MYP_4878 9.884e-11 70.0 COG3652@1|root,COG3652@2|Bacteria,4NZ9A@976|Bacteroidetes 976|Bacteroidetes S Domain of unknown function (DUF4142) - - - - - - - - - - - - DUF4142 DYD3_k127_4969398_1 760192.Halhy_5536 8.798e-249 809.0 COG2351@1|root,COG3409@1|root,COG2351@2|Bacteria,COG3409@2|Bacteria,4NJ4W@976|Bacteroidetes 976|Bacteroidetes M Salmonella virulence plasmid 28.1kDa A protein - - - - - - - - - - - - Hemopexin,VRP1 DYD3_k127_497809_0 700598.Niako_5696 8.876e-178 566.0 COG2234@1|root,COG2234@2|Bacteria,4NEHY@976|Bacteroidetes,1IP78@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase, M28 - - - - - - - - - - - - Peptidase_M28 DYD3_k127_497809_1 1123248.KB893348_gene293 8.624e-124 417.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NK8Q@976|Bacteroidetes 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HTH_18,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_4980620_0 700598.Niako_3960 0.0 1175.0 COG0363@1|root,COG2120@1|root,COG0363@2|Bacteria,COG2120@2|Bacteria,4NDUN@976|Bacteroidetes,1IPSI@117747|Sphingobacteriia 976|Bacteroidetes G Glucosamine-6-phosphate nagB - 3.5.99.6 ko:K02564 ko00520,ko01100,map00520,map01100 - R00765 RC00163 ko00000,ko00001,ko01000 - - - Glucosamine_iso,PIG-L DYD3_k127_4980620_3 700598.Niako_3961 6.709e-07 55.0 COG0745@1|root,COG0745@2|Bacteria 700598.Niako_3961|- T phosphorelay signal transduction system - - - - - - - - - - - - - DYD3_k127_4980620_2 700598.Niako_3962 2.898e-74 252.0 COG0745@1|root,COG0745@2|Bacteria,4NPID@976|Bacteroidetes 976|Bacteroidetes KT regulator - - - - - - - - - - - - Response_reg DYD3_k127_4980620_1 700598.Niako_3963 8.005e-215 673.0 COG3437@1|root,COG4251@1|root,COG3437@2|Bacteria,COG4251@2|Bacteria,4NMAR@976|Bacteroidetes,1IX9J@117747|Sphingobacteriia 976|Bacteroidetes T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,Response_reg DYD3_k127_4996233_1 700598.Niako_0966 1.35e-14 73.0 COG2115@1|root,COG2115@2|Bacteria,4NEBQ@976|Bacteroidetes,1IP02@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the xylose isomerase family xylA - 5.3.1.5 ko:K01805 ko00040,ko00051,ko01100,map00040,map00051,map01100 - R00878,R01432 RC00376,RC00516 ko00000,ko00001,ko01000 - - - - DYD3_k127_4996233_0 1191523.MROS_0031 6.026e-294 910.0 COG4146@1|root,COG4146@2|Bacteria 2|Bacteria S symporter activity - - - ko:K03307 - - - - ko00000 2.A.21 - - SSF DYD3_k127_5004059_1 926549.KI421517_gene807 5.078e-290 898.0 COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,4NH58@976|Bacteroidetes,47TQS@768503|Cytophagia 976|Bacteroidetes CG PQQ-like domain - - - - - - - - - - - - Cytochrome_CBB3,PQQ DYD3_k127_5004059_0 760192.Halhy_0725 8.023e-319 985.0 COG1917@1|root,COG3386@1|root,COG1917@2|Bacteria,COG3386@2|Bacteria,4NF4A@976|Bacteroidetes,1IRQS@117747|Sphingobacteriia 976|Bacteroidetes G SMP-30/Gluconolaconase/LRE-like region - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL DYD3_k127_5004059_5 760192.Halhy_0728 4.898e-161 511.0 COG0684@1|root,COG0684@2|Bacteria,4NF3M@976|Bacteroidetes,1IR2I@117747|Sphingobacteriia 976|Bacteroidetes H SPTR Demethylmenaquinone methyltransferase-like protein - - - - - - - - - - - - RraA-like DYD3_k127_5004059_2 760192.Halhy_0729 5.448e-238 747.0 COG5434@1|root,COG5434@2|Bacteria,4NE4H@976|Bacteroidetes 976|Bacteroidetes M Belongs to the glycosyl hydrolase 28 family - - - - - - - - - - - - - DYD3_k127_5004059_4 700598.Niako_2427 2.266e-195 615.0 COG2382@1|root,COG2382@2|Bacteria,4NF50@976|Bacteroidetes 976|Bacteroidetes P esterase - - - ko:K07214 - - - - ko00000 - - - Esterase,SASA DYD3_k127_5004059_3 700598.Niako_2834 9.783e-222 693.0 COG4948@1|root,COG4948@2|Bacteria,4NIIJ@976|Bacteroidetes,1IPCK@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Mandelate racemase muconate lactonizing enzyme, C-terminal - - 4.2.1.6 ko:K01684 ko00052,ko01100,ko01120,map00052,map01100,map01120 M00552 R03033 RC00543 ko00000,ko00001,ko00002,ko01000 - - - MR_MLE_C,MR_MLE_N DYD3_k127_5004059_6 1123248.KB893326_gene1535 1.606e-157 503.0 COG0684@1|root,COG0684@2|Bacteria,4NF3M@976|Bacteroidetes,1IR2I@117747|Sphingobacteriia 976|Bacteroidetes H SPTR Demethylmenaquinone methyltransferase-like protein - - - - - - - - - - - - RraA-like DYD3_k127_5004059_7 1166018.FAES_0111 8.535e-61 213.0 COG0385@1|root,COG0385@2|Bacteria,4NEIM@976|Bacteroidetes,47JSH@768503|Cytophagia 976|Bacteroidetes S PFAM Bile acid sodium symporter - - - ko:K03453 - - - - ko00000 2.A.28 - - SBF DYD3_k127_5006450_1 700598.Niako_7323 5.386e-145 463.0 COG0707@1|root,COG0707@2|Bacteria,4NE6D@976|Bacteroidetes,1IPF4@117747|Sphingobacteriia 976|Bacteroidetes M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) murG - 2.4.1.227 ko:K02563 ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112 - R05032,R05662 RC00005,RC00049 ko00000,ko00001,ko01000,ko01011 - GT28 - Glyco_tran_28_C,Glyco_transf_28 DYD3_k127_5006450_0 700598.Niako_7322 5.111e-196 618.0 COG0772@1|root,COG0772@2|Bacteria,4NFIM@976|Bacteroidetes,1IPWG@117747|Sphingobacteriia 976|Bacteroidetes D Belongs to the SEDS family ftsW - - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FTSW_RODA_SPOVE DYD3_k127_5006450_2 700598.Niako_7321 8.526e-18 82.0 COG0771@1|root,COG0771@2|Bacteria,4NEFF@976|Bacteroidetes,1INPJ@117747|Sphingobacteriia 976|Bacteroidetes M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) murD - 6.3.2.9 ko:K01925 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R02783 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase_C,Mur_ligase_M DYD3_k127_5024208_1 700598.Niako_3459 1.021e-32 127.0 COG0724@1|root,COG0724@2|Bacteria,4NT1J@976|Bacteroidetes,1J144@117747|Sphingobacteriia 976|Bacteroidetes S PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - - - - - - - - - - RRM_1 DYD3_k127_5024208_4 926551.KB900715_gene2201 5.972e-13 70.0 2DFVK@1|root,2ZTBH@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_5024208_0 700598.Niako_0513 2.927e-163 518.0 COG1216@1|root,COG1216@2|Bacteria,4NFP0@976|Bacteroidetes,1IP9Q@117747|Sphingobacteriia 976|Bacteroidetes H glycosyl transferase family 2 - - - ko:K07011 - - - - ko00000 - - - Glycos_transf_2 DYD3_k127_5033880_0 700598.Niako_6784 5.505e-138 441.0 COG0451@1|root,COG0451@2|Bacteria,4NDV4@976|Bacteroidetes,1IQ44@117747|Sphingobacteriia 976|Bacteroidetes GM Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction fcl - 1.1.1.271 ko:K02377 ko00051,ko00520,ko01100,map00051,map00520,map01100 - R05692 RC01014 ko00000,ko00001,ko01000 - - - Epimerase DYD3_k127_5033880_1 700598.Niako_6785 6.346e-102 337.0 COG4464@1|root,COG4464@2|Bacteria,4NMUT@976|Bacteroidetes,1IS2C@117747|Sphingobacteriia 976|Bacteroidetes GM COG4464 Capsular polysaccharide biosynthesis protein - - 3.1.3.48 ko:K01104 - - - - ko00000,ko01000 - - - - DYD3_k127_5033880_2 700598.Niako_6786 3.336e-52 187.0 COG0789@1|root,COG5012@1|root,COG0789@2|Bacteria,COG5012@2|Bacteria,4NERC@976|Bacteroidetes,1IS5U@117747|Sphingobacteriia 976|Bacteroidetes K MerR family - - - ko:K22491 - - - - ko00000,ko03000 - - - B12-binding_2,MerR_1 DYD3_k127_5035100_1 700598.Niako_4497 3.208e-143 455.0 COG0131@1|root,COG0241@1|root,COG0131@2|Bacteria,COG0241@2|Bacteria,4NENP@976|Bacteroidetes,1IP4B@117747|Sphingobacteriia 976|Bacteroidetes E belongs to the imidazoleglycerol-phosphate dehydratase family hisB GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15,4.2.1.19 ko:K01089,ko:K01693 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R03013,R03457 RC00017,RC00932 ko00000,ko00001,ko00002,ko01000 - - - Hydrolase_like,IGPD,PNK3P DYD3_k127_5035100_3 700598.Niako_0330 1.493e-133 450.0 COG2374@1|root,COG2374@2|Bacteria,4NURG@976|Bacteroidetes 976|Bacteroidetes F Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol - - - - - - - - - - - - - DYD3_k127_5035100_6 1356852.N008_15160 2.435e-22 113.0 COG2353@1|root,COG2356@1|root,COG3391@1|root,COG2353@2|Bacteria,COG2356@2|Bacteria,COG3391@2|Bacteria,4NZAU@976|Bacteroidetes 976|Bacteroidetes DZ YceI-like domain - - - - - - - - - - - - - DYD3_k127_5035100_0 700598.Niako_0329 1.063e-246 765.0 COG1160@1|root,COG1160@2|Bacteria,4NE2J@976|Bacteroidetes,1IR18@117747|Sphingobacteriia 976|Bacteroidetes S GTPase that plays an essential role in the late steps of ribosome biogenesis der - - ko:K03977 - - - - ko00000,ko03009 - - - KH_dom-like,MMR_HSR1 DYD3_k127_5035100_2 700598.Niako_0328 2.846e-141 456.0 COG1159@1|root,COG1159@2|Bacteria,4NES2@976|Bacteroidetes,1INM6@117747|Sphingobacteriia 976|Bacteroidetes S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism era - - ko:K03595 - - - - ko00000,ko03009,ko03029 - - - KH_2,MMR_HSR1 DYD3_k127_5035100_5 700598.Niako_0324 4.96e-31 131.0 COG3595@1|root,COG3595@2|Bacteria,4NIA2@976|Bacteroidetes,1ITRH@117747|Sphingobacteriia 976|Bacteroidetes S Putative auto-transporter adhesin, head GIN domain - - - - - - - - - - - - DUF2807 DYD3_k127_5035100_4 700598.Niako_0324 2.477e-61 220.0 COG3595@1|root,COG3595@2|Bacteria,4NIA2@976|Bacteroidetes,1ITRH@117747|Sphingobacteriia 976|Bacteroidetes S Putative auto-transporter adhesin, head GIN domain - - - - - - - - - - - - DUF2807 DYD3_k127_5036445_3 700598.Niako_5778 2.049e-54 192.0 COG2197@1|root,COG2197@2|Bacteria,4NJW3@976|Bacteroidetes,1IRVH@117747|Sphingobacteriia 976|Bacteroidetes T Two component transcriptional regulator, LuxR family - - - - - - - - - - - - GerE,Response_reg DYD3_k127_5036445_2 700598.Niako_5779 2.903e-113 371.0 COG4585@1|root,COG4585@2|Bacteria,4NNE1@976|Bacteroidetes,1IY8W@117747|Sphingobacteriia 976|Bacteroidetes T PFAM ATP-binding region - - - - - - - - - - - - HATPase_c,HisKA_3 DYD3_k127_5036445_5 1121931.AUHG01000010_gene121 4.738e-25 110.0 COG2318@1|root,COG2318@2|Bacteria,4NUH8@976|Bacteroidetes,1I4KA@117743|Flavobacteriia 976|Bacteroidetes S DinB superfamily - - - - - - - - - - - - DinB,DinB_2 DYD3_k127_5036445_0 700598.Niako_5777 0.0 1759.0 COG0458@1|root,COG0458@2|Bacteria,4NEQ0@976|Bacteroidetes,1INWJ@117747|Sphingobacteriia 976|Bacteroidetes EF Carbamoyl-phosphate synthase carB - 6.3.5.5 ko:K01955 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_L_D2,CPSase_L_D3,MGS DYD3_k127_5036445_1 700598.Niako_5775 1.234e-147 474.0 COG0739@1|root,COG0739@2|Bacteria,4NED7@976|Bacteroidetes,1INUW@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase, M23 - - - - - - - - - - - - Peptidase_M23 DYD3_k127_504003_0 700598.Niako_6266 1.899e-91 303.0 COG1595@1|root,COG1595@2|Bacteria,4NETF@976|Bacteroidetes,1ISCE@117747|Sphingobacteriia 976|Bacteroidetes K COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_504003_1 700598.Niako_1561 3.301e-57 210.0 COG3637@1|root,COG3637@2|Bacteria,4NQ11@976|Bacteroidetes,1IYEN@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl DYD3_k127_5040777_5 1267211.KI669560_gene1544 1.813e-64 226.0 COG0697@1|root,COG0697@2|Bacteria 2|Bacteria EG spore germination MA20_03510 - - - - - - - - - - - EamA DYD3_k127_5040777_2 313606.M23134_01996 1.377e-132 434.0 COG0477@1|root,COG2814@2|Bacteria,4NEZT@976|Bacteroidetes,47M0X@768503|Cytophagia 976|Bacteroidetes EGP PFAM Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD3_k127_5040777_0 700598.Niako_2082 3.685e-260 804.0 COG0731@1|root,COG0731@2|Bacteria,4PNUE@976|Bacteroidetes,1J0SJ@117747|Sphingobacteriia 976|Bacteroidetes C Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - Radical_SAM DYD3_k127_5040777_1 700598.Niako_1518 6.723e-187 587.0 COG0010@1|root,COG0010@2|Bacteria,4NE01@976|Bacteroidetes,1IV0I@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the arginase family speB - 3.5.3.11 ko:K01480 ko00330,ko01100,map00330,map01100 M00133 R01157 RC00024,RC00329 ko00000,ko00001,ko00002,ko01000 - - - Arginase DYD3_k127_5041839_1 1313301.AUGC01000006_gene126 2.379e-18 98.0 COG3292@1|root,COG3292@2|Bacteria 2|Bacteria - - - - - ko:K16923 - M00582 - - ko00000,ko00002,ko02000 3.A.1.28 - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_5041839_0 700598.Niako_1549 3.693e-46 168.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ1E@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_5042279_0 1121381.JNIV01000006_gene687 1.948e-135 449.0 COG1680@1|root,COG1680@2|Bacteria 2|Bacteria V peptidase activity - - - - - - - - - - - - Beta-lactamase DYD3_k127_5044467_0 700598.Niako_2629 1.616e-240 755.0 COG0358@1|root,COG0358@2|Bacteria,4NENT@976|Bacteroidetes,1IR9Y@117747|Sphingobacteriia 976|Bacteroidetes L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication dnaG - - ko:K02316 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2 DYD3_k127_5044467_5 1122176.KB903542_gene389 1.781e-51 188.0 COG1437@1|root,COG1437@2|Bacteria,4NQQK@976|Bacteroidetes 976|Bacteroidetes F CYTH domain - - - - - - - - - - - - CYTH DYD3_k127_5044467_4 700598.Niako_2630 4.545e-62 216.0 COG4430@1|root,COG4430@2|Bacteria,4NQAJ@976|Bacteroidetes,1IUMF@117747|Sphingobacteriia 976|Bacteroidetes S Bacteriocin-protection, YdeI or OmpD-Associated - - - - - - - - - - - - OmdA DYD3_k127_5044467_1 700598.Niako_2632 1.702e-119 389.0 COG0501@1|root,COG0501@2|Bacteria,4NE0J@976|Bacteroidetes,1J0JU@117747|Sphingobacteriia 976|Bacteroidetes O PFAM Peptidase family M48 - - - - - - - - - - - - Peptidase_M48 DYD3_k127_5044467_2 700598.Niako_2633 9.37e-112 364.0 COG0344@1|root,COG0344@2|Bacteria,4NMU3@976|Bacteroidetes,1IPFE@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP plsY - 2.3.1.15 ko:K08591 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - G3P_acyltransf DYD3_k127_5044467_3 700598.Niako_2634 2.657e-89 304.0 COG2264@1|root,COG2264@2|Bacteria,4NFRW@976|Bacteroidetes,1IQ5D@117747|Sphingobacteriia 976|Bacteroidetes J Ribosomal protein L11 methyltransferase prmA - - ko:K02687 - - - - ko00000,ko01000,ko03009 - - - PrmA DYD3_k127_5044467_6 700598.Niako_2635 9.04e-16 77.0 COG1185@1|root,COG1185@2|Bacteria,4NE4Q@976|Bacteroidetes,1INMK@117747|Sphingobacteriia 976|Bacteroidetes J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction pnp - 2.7.7.8 ko:K00962 ko00230,ko00240,ko03018,map00230,map00240,map03018 M00394 R00437,R00438,R00439,R00440 RC02795 ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 - - - KH_1,PNPase,RNase_PH,RNase_PH_C,S1 DYD3_k127_504649_3 700598.Niako_6849 2.034e-55 196.0 COG0635@1|root,COG0635@2|Bacteria,4NFEE@976|Bacteroidetes,1IR75@117747|Sphingobacteriia 976|Bacteroidetes H Involved in the biosynthesis of porphyrin-containing compound hemN - - - - - - - - - - - HemN_C,Radical_SAM DYD3_k127_504649_1 700598.Niako_6847 3.19e-184 580.0 COG0240@1|root,COG0240@2|Bacteria,4NF4R@976|Bacteroidetes,1IQF4@117747|Sphingobacteriia 976|Bacteroidetes I Glycerol-3-phosphate dehydrogenase gpsA - 1.1.1.94 ko:K00057 ko00564,ko01110,map00564,map01110 - R00842,R00844 RC00029 ko00000,ko00001,ko01000 - - - NAD_Gly3P_dh_C,NAD_Gly3P_dh_N DYD3_k127_504649_0 700598.Niako_6846 2.229e-193 612.0 COG1566@1|root,COG1566@2|Bacteria,4PMCY@976|Bacteroidetes,1J0U2@117747|Sphingobacteriia 976|Bacteroidetes V Biotin-lipoyl like - - - ko:K02005 - - - - ko00000 - - - HlyD_D23 DYD3_k127_504649_2 700598.Niako_6845 3.067e-155 503.0 COG1538@1|root,COG1538@2|Bacteria,4NEEN@976|Bacteroidetes,1IP2E@117747|Sphingobacteriia 976|Bacteroidetes MU outer membrane efflux protein - - - ko:K12340 ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133 M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko02044 1.B.17,2.A.6.2 - - OEP DYD3_k127_5056310_2 1123277.KB893200_gene6415 4.501e-27 111.0 COG3832@1|root,COG3832@2|Bacteria,4NRGI@976|Bacteroidetes,47R9M@768503|Cytophagia 976|Bacteroidetes S Pfam Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_5056310_0 1121481.AUAS01000017_gene2502 8.085e-168 557.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47KTF@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5056310_1 700598.Niako_3586 1.886e-35 138.0 COG0385@1|root,COG0385@2|Bacteria,4NEIM@976|Bacteroidetes,1IR5T@117747|Sphingobacteriia 976|Bacteroidetes S Bile acid sodium symporter - - - ko:K03453 - - - - ko00000 2.A.28 - - SBF DYD3_k127_505657_0 760192.Halhy_3928 1.786e-242 755.0 COG0823@1|root,COG0823@2|Bacteria,4NG4S@976|Bacteroidetes,1IVMQ@117747|Sphingobacteriia 976|Bacteroidetes U WD40-like Beta Propeller Repeat - - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PD40 DYD3_k127_505657_2 1453505.JASY01000002_gene2680 3.779e-55 195.0 COG3682@1|root,COG3682@2|Bacteria,4NP4S@976|Bacteroidetes,1I229@117743|Flavobacteriia,2NWBX@237|Flavobacterium 976|Bacteroidetes K Penicillinase repressor - - - - - - - - - - - - Penicillinase_R DYD3_k127_505657_1 1492737.FEM08_29730 8.813e-70 253.0 COG0810@1|root,COG4219@1|root,COG0810@2|Bacteria,COG4219@2|Bacteria,4NHAY@976|Bacteroidetes,1HXH6@117743|Flavobacteriia,2NT07@237|Flavobacterium 976|Bacteroidetes KT BlaR1 peptidase M56 - - - - - - - - - - - - Peptidase_M56,TonB_C DYD3_k127_505657_4 1123057.P872_19595 1.198e-11 65.0 2DS2Y@1|root,33E9X@2|Bacteria,4NY47@976|Bacteroidetes,47T3T@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_505657_3 1270196.JCKI01000005_gene2840 8.805e-49 176.0 COG0251@1|root,COG0251@2|Bacteria,4NMXE@976|Bacteroidetes,1IZFP@117747|Sphingobacteriia 976|Bacteroidetes J Endoribonuclease L-PSP - - - - - - - - - - - - Ribonuc_L-PSP DYD3_k127_5057845_3 509635.N824_19370 1.827e-40 154.0 COG2207@1|root,COG2207@2|Bacteria,4NHYH@976|Bacteroidetes,1IPGH@117747|Sphingobacteriia 976|Bacteroidetes K PFAM helix-turn-helix- domain containing protein AraC type - - - - - - - - - - - - HTH_18 DYD3_k127_5057845_1 1185876.BN8_01906 1.164e-110 366.0 COG0702@1|root,COG0702@2|Bacteria,4NH6G@976|Bacteroidetes,47M2S@768503|Cytophagia 976|Bacteroidetes GM NAD(P)H-binding - - - - - - - - - - - - NAD_binding_10,NmrA DYD3_k127_5057845_2 929556.Solca_3692 5.535e-46 171.0 COG5500@1|root,COG5500@2|Bacteria,4NR9R@976|Bacteroidetes,1ISRS@117747|Sphingobacteriia 976|Bacteroidetes C Domain of unknown function (DUF1772) - - - - - - - - - - - - DUF1772 DYD3_k127_5057845_0 991.IW20_20370 2.392e-122 398.0 COG2936@1|root,COG2936@2|Bacteria,4NHJU@976|Bacteroidetes,1I0B6@117743|Flavobacteriia,2P05Y@237|Flavobacterium 976|Bacteroidetes S X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - ko:K06978 - - - - ko00000 - - - PepX_C,Peptidase_S15 DYD3_k127_5067284_1 700598.Niako_2175 2.079e-201 634.0 COG0682@1|root,COG0682@2|Bacteria,4NGSG@976|Bacteroidetes,1INRB@117747|Sphingobacteriia 976|Bacteroidetes M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - ko:K13292 - - - - ko00000,ko01000 - - - LGT DYD3_k127_5067284_0 1267211.KI669560_gene1953 1.269e-258 820.0 COG1629@1|root,COG1629@2|Bacteria,4P4MW@976|Bacteroidetes,1IP27@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD3_k127_5067284_2 700598.Niako_2173 1.099e-166 537.0 COG1629@1|root,COG3664@1|root,COG1629@2|Bacteria,COG3664@2|Bacteria,4P4MW@976|Bacteroidetes,1IP05@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD3_k127_5073122_2 1123248.KB893318_gene4218 1.841e-35 141.0 COG2017@1|root,COG2017@2|Bacteria,4NF5G@976|Bacteroidetes,1IPH9@117747|Sphingobacteriia 976|Bacteroidetes G Converts alpha-aldose to the beta-anomer - - 5.1.3.3 ko:K01785 ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130 M00632 R01602,R10619 RC00563 ko00000,ko00001,ko00002,ko01000 - - - Aldose_epim DYD3_k127_5073122_0 700598.Niako_2576 2.447e-247 771.0 COG1012@1|root,COG1012@2|Bacteria,4NEKG@976|Bacteroidetes,1INQK@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Aldehyde dehydrogenase aldH - 1.2.1.26 ko:K13877 ko00040,ko00053,map00040,map00053 - R00264 RC00080 ko00000,ko00001,ko01000 - - - Aldedh DYD3_k127_5073122_1 700598.Niako_2577 6.318e-138 441.0 COG0621@1|root,COG0621@2|Bacteria,4NEJK@976|Bacteroidetes,1IP0Q@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,TRAM,UPF0004 DYD3_k127_5078054_2 700598.Niako_0396 4.148e-35 136.0 COG2382@1|root,COG2382@2|Bacteria,4NI86@976|Bacteroidetes,1IQ5J@117747|Sphingobacteriia 976|Bacteroidetes P Putative esterase - - - - - - - - - - - - Esterase DYD3_k127_5078054_0 925409.KI911562_gene1872 2.11e-178 562.0 COG0189@1|root,COG0189@2|Bacteria,4NFK1@976|Bacteroidetes,1IR39@117747|Sphingobacteriia 976|Bacteroidetes HJ Glutathione synthase - - - - - - - - - - - - - DYD3_k127_5078054_1 925409.KI911562_gene1871 5.509e-60 209.0 COG2170@1|root,COG2170@2|Bacteria,4NFFP@976|Bacteroidetes,1IRMY@117747|Sphingobacteriia 976|Bacteroidetes S ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity ybdK - - ko:K06048 - - - - ko00000,ko01000 - - - GCS2 DYD3_k127_5092570_2 1434325.AZQN01000007_gene3145 1.701e-35 136.0 COG0640@1|root,COG0640@2|Bacteria,4NQCU@976|Bacteroidetes,47QH4@768503|Cytophagia 976|Bacteroidetes K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20,HTH_5 DYD3_k127_5092570_1 925409.KI911562_gene966 3.045e-61 215.0 COG3832@1|root,COG3832@2|Bacteria,4NFVK@976|Bacteroidetes,1IPXU@117747|Sphingobacteriia 976|Bacteroidetes S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - 3-dmu-9_3-mt,AHSA1 DYD3_k127_5092570_3 1347392.CCEZ01000011_gene2457 1.856e-17 94.0 COG2312@1|root,COG2312@2|Bacteria,1UEE1@1239|Firmicutes,24ABX@186801|Clostridia,36EG0@31979|Clostridiaceae 186801|Clostridia S Erythromycin esterase - - - - - - - - - - - - - DYD3_k127_5092570_0 694427.Palpr_2629 2.58e-66 229.0 COG0773@1|root,COG0773@2|Bacteria,4NE1V@976|Bacteroidetes,2FM6G@200643|Bacteroidia,22WMY@171551|Porphyromonadaceae 976|Bacteroidetes M Belongs to the MurCDEF family murC - 6.3.2.8 ko:K01924 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R03193 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M DYD3_k127_5093986_2 700598.Niako_5740 5.051e-18 90.0 COG1033@1|root,COG1033@2|Bacteria,4NE0M@976|Bacteroidetes,1IQCU@117747|Sphingobacteriia 976|Bacteroidetes S of the RND superfamily - - - ko:K07003 - - - - ko00000 - - - MMPL DYD3_k127_5093986_0 700598.Niako_5741 5.4e-323 1006.0 COG3292@1|root,COG3292@2|Bacteria,4NDWE@976|Bacteroidetes,1IVTD@117747|Sphingobacteriia 976|Bacteroidetes T Two component regulator propeller domain protein - - - - - - - - - - - - Reg_prop DYD3_k127_5093986_1 269798.CHU_3596 4.178e-72 250.0 COG5285@1|root,COG5285@2|Bacteria,4NIIV@976|Bacteroidetes,47PQ1@768503|Cytophagia 976|Bacteroidetes Q Phytanoyl-CoA dioxygenase (PhyH) - - - - - - - - - - - - PhyH DYD3_k127_5101047_0 700598.Niako_6594 2.921e-178 560.0 COG4775@1|root,COG4775@2|Bacteria,4NE6Z@976|Bacteroidetes,1IR22@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein assembly complex, YaeT protein yaeT - - ko:K07277 - - - - ko00000,ko02000,ko03029 1.B.33 - - Bac_surface_Ag,POTRA DYD3_k127_5101047_2 700598.Niako_6595 1.592e-76 261.0 COG2825@1|root,COG2825@2|Bacteria,4NH46@976|Bacteroidetes,1IS3M@117747|Sphingobacteriia 976|Bacteroidetes M outer membrane chaperone Skp (OmpH) ompH - - ko:K06142 - - - - ko00000 - - - OmpH DYD3_k127_5101047_3 700598.Niako_6596 7.105e-70 243.0 COG2825@1|root,COG2825@2|Bacteria 2|Bacteria M unfolded protein binding ompH - - ko:K06142 - - - - ko00000 - - - OmpH DYD3_k127_5101047_1 700598.Niako_6597 1.868e-136 438.0 COG0796@1|root,COG0796@2|Bacteria,4NG1C@976|Bacteroidetes,1IPZH@117747|Sphingobacteriia 976|Bacteroidetes M Provides the (R)-glutamate required for cell wall biosynthesis murI - 5.1.1.3 ko:K01776 ko00471,ko01100,map00471,map01100 - R00260 RC00302 ko00000,ko00001,ko01000,ko01011 - - - Asp_Glu_race DYD3_k127_5101047_7 700598.Niako_6598 1.217e-19 89.0 COG0230@1|root,COG0230@2|Bacteria,4NUTV@976|Bacteroidetes,1IU87@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the bacterial ribosomal protein bL34 family rpmH - - ko:K02914 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L34 DYD3_k127_5101047_6 1168034.FH5T_06505 1.71e-22 101.0 COG0594@1|root,COG0594@2|Bacteria,4NUMM@976|Bacteroidetes,2FUKM@200643|Bacteroidia 976|Bacteroidetes J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme rnpA - 3.1.26.5 ko:K03536 - - - - ko00000,ko01000,ko03016 - - - Ribonuclease_P DYD3_k127_5101047_4 700598.Niako_6600 2.069e-41 152.0 COG0759@1|root,COG0759@2|Bacteria,4NV1N@976|Bacteroidetes,1ITUQ@117747|Sphingobacteriia 976|Bacteroidetes S Could be involved in insertion of integral membrane proteins into the membrane - - - ko:K08998 - - - - ko00000 - - - Haemolytic DYD3_k127_5103611_0 700598.Niako_2093 8.654e-199 624.0 COG0527@1|root,COG0527@2|Bacteria,4NF0M@976|Bacteroidetes,1IQ3C@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the aspartokinase family lysC - 2.7.2.4 ko:K00928 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R00480 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase DYD3_k127_5103611_1 700598.Niako_2095 3.2e-174 559.0 COG0249@1|root,COG0249@2|Bacteria,4NE6X@976|Bacteroidetes,1IQ4B@117747|Sphingobacteriia 976|Bacteroidetes L SMART DNA mismatch repair protein MutS mutS_2 - - - - - - - - - - - MutS_III,MutS_V DYD3_k127_5112357_1 388413.ALPR1_05745 4.473e-08 61.0 COG0793@1|root,COG0793@2|Bacteria,4NJW9@976|Bacteroidetes,47VWH@768503|Cytophagia 976|Bacteroidetes M Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_5112357_0 700598.Niako_1812 4.184e-194 609.0 COG0111@1|root,COG0111@2|Bacteria,4NDVN@976|Bacteroidetes 976|Bacteroidetes EH D-isomer specific 2-hydroxyacid dehydrogenase serA - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C,HAD DYD3_k127_511267_0 700598.Niako_6568 0.0 1027.0 COG4773@1|root,COG4773@2|Bacteria,4PKGH@976|Bacteroidetes 976|Bacteroidetes P Receptor - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3 DYD3_k127_511267_5 700598.Niako_6567 3.154e-24 106.0 2DQVY@1|root,338ZT@2|Bacteria,4PJ6A@976|Bacteroidetes,1IZN9@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_511267_2 700598.Niako_6566 2.541e-204 639.0 COG0454@1|root,COG0456@2|Bacteria,4NFWE@976|Bacteroidetes,1IQFF@117747|Sphingobacteriia 976|Bacteroidetes K Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - Acetyltransf_1 DYD3_k127_511267_3 700598.Niako_6563 5.963e-94 315.0 COG0726@1|root,COG0726@2|Bacteria,4NFJP@976|Bacteroidetes,1IQSF@117747|Sphingobacteriia 976|Bacteroidetes G polysaccharide deacetylase - - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - CelD_N,Glyco_hydro_9,Polysacc_deac_1 DYD3_k127_511267_1 700598.Niako_6563 7.356e-304 949.0 COG0726@1|root,COG0726@2|Bacteria,4NFJP@976|Bacteroidetes,1IQSF@117747|Sphingobacteriia 976|Bacteroidetes G polysaccharide deacetylase - - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - CelD_N,Glyco_hydro_9,Polysacc_deac_1 DYD3_k127_511267_4 700598.Niako_6562 2.562e-90 326.0 COG2367@1|root,COG2367@2|Bacteria,4NH6K@976|Bacteroidetes,1INP4@117747|Sphingobacteriia 976|Bacteroidetes V Beta-lactamase enzyme family - - - - - - - - - - - - Beta-lactamase2 DYD3_k127_5116704_0 700598.Niako_6274 2.082e-111 362.0 COG0210@1|root,COG0210@2|Bacteria,4NDWN@976|Bacteroidetes,1IP3C@117747|Sphingobacteriia 976|Bacteroidetes L DNA helicase pcrA - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C DYD3_k127_5116704_1 1380600.AUYN01000001_gene2892 1.892e-44 184.0 COG0642@1|root,COG0745@1|root,COG3292@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NDXU@976|Bacteroidetes,1HXUN@117743|Flavobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_51176_0 1122176.KB903532_gene2712 1.044e-136 445.0 COG0613@1|root,COG0613@2|Bacteria,4NHZ5@976|Bacteroidetes,1ISEJ@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function - - 3.1.3.97 ko:K07053 - - R00188,R11188 RC00078 ko00000,ko01000 - - - DUF5001,PHP DYD3_k127_51176_1 468059.AUHA01000003_gene1980 1.429e-113 371.0 COG1349@1|root,COG1349@2|Bacteria,4NF6P@976|Bacteroidetes,1IRHP@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - ko:K02081 - - - - ko00000,ko03000 - - - DeoRC,HTH_DeoR DYD3_k127_5122286_1 1185876.BN8_04107 4.175e-137 443.0 COG0673@1|root,COG0673@2|Bacteria,4NG5T@976|Bacteroidetes,47MFM@768503|Cytophagia 976|Bacteroidetes S Putative oxidoreductase C terminal domain - - - - - - - - - - - - GFO_IDH_MocA,Oxidoreduct_C DYD3_k127_5122286_0 1185876.BN8_04108 2.482e-234 731.0 COG0673@1|root,COG0673@2|Bacteria,4NGHJ@976|Bacteroidetes,47NH0@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_5122286_2 509635.N824_15670 2.516e-23 100.0 COG3828@1|root,COG3828@2|Bacteria,4NEWH@976|Bacteroidetes,1IR1M@117747|Sphingobacteriia 976|Bacteroidetes S Methane oxygenase PmoA - - - - - - - - - - - - PmoA DYD3_k127_5122962_1 1237149.C900_01563 9.094e-147 473.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NTJ@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5122962_0 700598.Niako_1201 6.931e-297 937.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INSB@117747|Sphingobacteriia 976|Bacteroidetes V TIGRFAM Acidobacterial duplicated orphan permease - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5122962_2 929703.KE386491_gene1729 1.168e-123 405.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_512562_3 700598.Niako_1665 2.374e-201 653.0 COG5434@1|root,COG5434@2|Bacteria,4PN6D@976|Bacteroidetes,1IV5T@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the glycosyl hydrolase 28 family - - - - - - - - - - - - - DYD3_k127_512562_4 509635.N824_20050 1.061e-189 619.0 COG4225@1|root,COG4225@2|Bacteria,4NHK7@976|Bacteroidetes,1IPXW@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Glycosyl Hydrolase Family 88 - - - - - - - - - - - - Glyco_hydro_88 DYD3_k127_512562_1 700598.Niako_3528 4.887e-255 790.0 COG0673@1|root,COG0673@2|Bacteria,4NHDS@976|Bacteroidetes,1IQ1R@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_512562_5 929713.NIASO_06990 2.691e-127 416.0 2DBNR@1|root,2ZA54@2|Bacteria,4NHW9@976|Bacteroidetes,1IRGS@117747|Sphingobacteriia 976|Bacteroidetes S Methane oxygenase PmoA - - - - - - - - - - - - PmoA DYD3_k127_512562_6 700598.Niako_5390 2.209e-92 308.0 2DB9P@1|root,2Z7Y1@2|Bacteria,4NHQN@976|Bacteroidetes,1IYRD@117747|Sphingobacteriia 976|Bacteroidetes S Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_512562_0 700598.Niako_5392 0.0 1304.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IVQZ@117747|Sphingobacteriia 976|Bacteroidetes P receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_512562_2 700598.Niako_5391 4.082e-225 707.0 COG0436@1|root,COG0436@2|Bacteria,4NEN3@976|Bacteroidetes,1ISDA@117747|Sphingobacteriia 976|Bacteroidetes E RagB SusD domain protein - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_5131308_1 760192.Halhy_3917 2.495e-140 454.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ9X@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5131308_0 760192.Halhy_3917 2.604e-267 846.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ9X@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5131308_2 1166018.FAES_0212 3.955e-115 379.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NWV@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_513567_2 1048983.EL17_02115 6.394e-25 106.0 COG2323@1|root,COG2323@2|Bacteria,4NR3N@976|Bacteroidetes,47QT3@768503|Cytophagia 976|Bacteroidetes S Protein of unknown function (DUF421) - - - - - - - - - - - - DUF421 DYD3_k127_513567_0 1123248.KB893326_gene1403 2.434e-109 363.0 COG0628@1|root,COG0628@2|Bacteria,4PGR0@976|Bacteroidetes,1IU33@117747|Sphingobacteriia 976|Bacteroidetes S AI-2E family transporter - - - - - - - - - - - - AI-2E_transport DYD3_k127_513567_1 1123248.KB893317_gene4303 3.748e-101 340.0 COG1295@1|root,COG1295@2|Bacteria,4NFG8@976|Bacteroidetes,1IQ97@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM YihY family protein (not ribonuclease BN) - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB DYD3_k127_513567_4 935557.ATYB01000008_gene5038 3.205e-06 51.0 COG0530@1|root,COG0530@2|Bacteria,1PW8G@1224|Proteobacteria,2U168@28211|Alphaproteobacteria,4BHPI@82115|Rhizobiaceae 28211|Alphaproteobacteria P Sodium/calcium exchanger protein - - - ko:K07301 - - - - ko00000,ko02000 2.A.19.5 - - Na_Ca_ex DYD3_k127_5148436_1 700598.Niako_6921 1.989e-92 309.0 29C3H@1|root,32VP8@2|Bacteria,4NXVV@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5148436_0 700598.Niako_6920 5.731e-152 484.0 COG3622@1|root,COG3622@2|Bacteria,4NG74@976|Bacteroidetes,1IQ15@117747|Sphingobacteriia 976|Bacteroidetes G Xylose isomerase - - 5.3.1.22 ko:K01816 ko00630,ko01100,map00630,map01100 - R01394 RC00511 ko00000,ko00001,ko01000 - - - AP_endonuc_2 DYD3_k127_5148436_2 700598.Niako_6919 4.817e-38 145.0 COG1262@1|root,COG1262@2|Bacteria,4NEUZ@976|Bacteroidetes,1IS6V@117747|Sphingobacteriia 976|Bacteroidetes S Sulfatase-modifying factor enzyme 1 - - - - - - - - - - - - Cytochrom_NNT,FGE-sulfatase DYD3_k127_5150218_0 760192.Halhy_1458 1.058e-99 342.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NJX0@976|Bacteroidetes,1J053@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_5155914_0 700598.Niako_0350 0.0 1360.0 COG4206@1|root,COG4206@2|Bacteria,4PKY5@976|Bacteroidetes,1IQUU@117747|Sphingobacteriia 976|Bacteroidetes H PFAM TonB-dependent Receptor Plug Domain - - - - - - - - - - - - CarbopepD_reg_2,Plug DYD3_k127_5155914_1 700598.Niako_0353 1.085e-134 431.0 COG0854@1|root,COG0854@2|Bacteria,4NF4Z@976|Bacteroidetes,1IQ0U@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate pdxJ GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 ko:K03474 ko00750,ko01100,map00750,map01100 M00124 R05838 RC01476 ko00000,ko00001,ko00002,ko01000 - - - PdxJ DYD3_k127_5155914_3 700598.Niako_0354 6.047e-38 146.0 COG2388@1|root,COG2388@2|Bacteria,4P9SF@976|Bacteroidetes,1IZT4@117747|Sphingobacteriia 976|Bacteroidetes S GCN5-related N-acetyl-transferase - - - ko:K06975 - - - - ko00000 - - - Acetyltransf_CG DYD3_k127_5155914_2 1166018.FAES_4537 1.283e-57 206.0 COG3545@1|root,COG3545@2|Bacteria,4NQ7E@976|Bacteroidetes,47QBV@768503|Cytophagia 976|Bacteroidetes S Serine hydrolase - - - ko:K07002 - - - - ko00000 - - - Ser_hydrolase DYD3_k127_5160164_2 700598.Niako_6954 1.774e-52 188.0 COG0802@1|root,COG0802@2|Bacteria,4NS89@976|Bacteroidetes,1ITMH@117747|Sphingobacteriia 976|Bacteroidetes S Threonylcarbamoyl adenosine biosynthesis protein TsaE tsaE - - ko:K06925 - - - - ko00000,ko03016 - - - TsaE DYD3_k127_5160164_0 700598.Niako_6955 6.632e-247 764.0 COG0686@1|root,COG0686@2|Bacteria,4NE8F@976|Bacteroidetes,1INRN@117747|Sphingobacteriia 976|Bacteroidetes E alanine dehydrogenase ald - 1.4.1.1 ko:K00259 ko00250,ko00430,ko01100,map00250,map00430,map01100 - R00396 RC00008 ko00000,ko00001,ko01000 - - - AlaDh_PNT_C,AlaDh_PNT_N DYD3_k127_5160164_1 1267211.KI669560_gene1057 2.834e-170 541.0 COG1373@1|root,COG1373@2|Bacteria,4NE39@976|Bacteroidetes,1IQTK@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4143) - - - ko:K07133 - - - - ko00000 - - - AAA_14,DUF4143 DYD3_k127_5163837_3 313606.M23134_05174 1.149e-06 50.0 COG2207@1|root,COG2207@2|Bacteria,4NHA5@976|Bacteroidetes 976|Bacteroidetes K AraC family - - - - - - - - - - - - HTH_18 DYD3_k127_5163837_2 1121897.AUGO01000003_gene1813 4.883e-60 213.0 29KMP@1|root,307IZ@2|Bacteria,4PQ15@976|Bacteroidetes,1IKY9@117743|Flavobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4287) - - - - - - - - - - - - DUF4287 DYD3_k127_5163837_0 313612.L8106_17667 4.78e-84 303.0 COG2319@1|root,COG2319@2|Bacteria,1FZVW@1117|Cyanobacteria,1H7FN@1150|Oscillatoriales 1117|Cyanobacteria KLT WD domain, G-beta repeat - - - - - - - - - - - - CHAT,WD40 DYD3_k127_5163837_1 760192.Halhy_4069 4.19e-69 240.0 COG2197@1|root,COG2197@2|Bacteria,4NUSF@976|Bacteroidetes 976|Bacteroidetes K COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_5164052_6 925409.KI911562_gene440 5.573e-38 145.0 COG0394@1|root,COG0394@2|Bacteria 2|Bacteria T Belongs to the low molecular weight phosphotyrosine protein phosphatase family arsC - 1.20.4.1,2.8.4.2,3.1.3.48 ko:K01104,ko:K03325,ko:K03741,ko:K03892,ko:K18701 - - - - ko00000,ko01000,ko02000,ko03000 2.A.59 - - LMWPc DYD3_k127_5164052_3 700598.Niako_6414 1.769e-72 247.0 COG1247@1|root,COG1247@2|Bacteria,4NNGH@976|Bacteroidetes,1ISBX@117747|Sphingobacteriia 976|Bacteroidetes M Acetyltransferase (GNAT) domain - - 2.3.1.183 ko:K03823 ko00440,ko01130,map00440,map01130 - R08871,R08938 RC00004,RC00064 ko00000,ko00001,ko01000 - - - Acetyltransf_1,Acetyltransf_4 DYD3_k127_5164052_4 700598.Niako_3333 8.124e-68 242.0 COG0671@1|root,COG0671@2|Bacteria,4NHUS@976|Bacteroidetes 976|Bacteroidetes I Acid phosphatase phoN - 3.1.3.2 ko:K09474 ko00740,ko01100,ko02020,map00740,map01100,map02020 - R00548 RC00017 ko00000,ko00001,ko01000 - - - PAP2 DYD3_k127_5164052_5 1267211.KI669560_gene110 9.621e-40 151.0 COG0640@1|root,COG0640@2|Bacteria,4NQK3@976|Bacteroidetes,1ITK5@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20,HTH_5 DYD3_k127_5164052_0 700598.Niako_6277 2.842e-263 819.0 COG0535@1|root,COG0535@2|Bacteria,4NEGK@976|Bacteroidetes,1IQVW@117747|Sphingobacteriia 976|Bacteroidetes S radical SAM domain protein - - - - - - - - - - - - - DYD3_k127_5164052_1 700598.Niako_6413 4.452e-190 599.0 COG0436@1|root,COG0436@2|Bacteria,4NES3@976|Bacteroidetes,1IP0R@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Aminotransferase class I and II ybdL - 2.6.1.88 ko:K14287 - - R08618 RC00006,RC00025 ko00000,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_5164052_2 1313421.JHBV01000014_gene3938 5.444e-118 394.0 COG0526@1|root,COG1477@1|root,COG0526@2|Bacteria,COG1477@2|Bacteria,4NGEK@976|Bacteroidetes,1IQG3@117747|Sphingobacteriia 976|Bacteroidetes H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein apbE - 2.7.1.180 ko:K03734 - - - - ko00000,ko01000 - - - ApbE DYD3_k127_5164052_8 485918.Cpin_1596 2.225e-16 80.0 2E4IE@1|root,32ZDH@2|Bacteria,4NUR6@976|Bacteroidetes,1IZT1@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4266) - - - - - - - - - - - - DUF4266 DYD3_k127_5164052_7 485918.Cpin_1595 9.878e-23 102.0 COG2067@1|root,COG2067@2|Bacteria,4NG1B@976|Bacteroidetes,1IWK5@117747|Sphingobacteriia 976|Bacteroidetes I Protein of unknown function (DUF3570) - - - - - - - - - - - - DUF3570 DYD3_k127_5170328_0 700598.Niako_0136 1.276e-254 805.0 COG2373@1|root,COG2373@2|Bacteria,4NED2@976|Bacteroidetes,1IQPG@117747|Sphingobacteriia 976|Bacteroidetes S COG2373 Large extracellular alpha-helical protein - - - - - - - - - - - - A2M,A2M_N,A2M_N_2,CarbopepD_reg_2,Plug DYD3_k127_5174322_3 700598.Niako_3670 1.1e-108 356.0 COG1988@1|root,COG1988@2|Bacteria,4NFBT@976|Bacteroidetes,1IYQQ@117747|Sphingobacteriia 976|Bacteroidetes S LexA-binding, inner membrane-associated putative hydrolase - - - ko:K07038 - - - - ko00000 - - - YdjM DYD3_k127_5174322_0 700598.Niako_3671 1.499e-194 616.0 COG2610@1|root,COG2610@2|Bacteria,4NFBD@976|Bacteroidetes,1IPQN@117747|Sphingobacteriia 976|Bacteroidetes EG COGs COG2610 H gluconate symporter and related permease gntT - - ko:K06155 - - - - ko00000,ko02000 2.A.8.1.4 - - GntP_permease DYD3_k127_5174322_5 760192.Halhy_2813 4.659e-66 228.0 COG0251@1|root,COG0251@2|Bacteria,4NMAM@976|Bacteroidetes,1IS1P@117747|Sphingobacteriia 976|Bacteroidetes J PFAM Endoribonuclease L-PSP - - - - - - - - - - - - YjgF_endoribonc DYD3_k127_5174322_2 700598.Niako_3672 4.48e-157 503.0 COG3616@1|root,COG3616@2|Bacteria,4NF5K@976|Bacteroidetes,1IPIR@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Alanine racemase, N-terminal - - - - - - - - - - - - Ala_racemase_N,D-ser_dehydrat DYD3_k127_5174322_1 929703.KE386491_gene3868 3.588e-186 587.0 COG2355@1|root,COG2355@2|Bacteria,4NDYZ@976|Bacteroidetes,47JHU@768503|Cytophagia 976|Bacteroidetes E PFAM Peptidase M19, renal dipeptidase - - 3.4.13.19 ko:K01273 - - - - ko00000,ko00537,ko01000,ko01002,ko04147 - - - Peptidase_M19 DYD3_k127_5174322_4 1123248.KB893315_gene3090 1.64e-71 248.0 COG1819@1|root,COG1819@2|Bacteria,4NIX4@976|Bacteroidetes,1IWR9@117747|Sphingobacteriia 976|Bacteroidetes CG UDP-glucoronosyl and UDP-glucosyl transferase - - - - - - - - - - - - UDPGT DYD3_k127_5180712_1 1267211.KI669560_gene1962 5.575e-43 161.0 2CM2H@1|root,32SDI@2|Bacteria,4NSAF@976|Bacteroidetes,1IUA8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - Lumazine_bd_2 DYD3_k127_5180712_0 700598.Niako_2180 2.913e-299 919.0 COG0019@1|root,COG0019@2|Bacteria,4NFHV@976|Bacteroidetes,1IQUN@117747|Sphingobacteriia 976|Bacteroidetes E decarboxylase speA - 4.1.1.19 ko:K01585 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N,Orn_DAP_Arg_deC DYD3_k127_5181688_1 760192.Halhy_6469 1.211e-21 96.0 COG3408@1|root,COG3408@2|Bacteria,4NESP@976|Bacteroidetes,1IQ5X@117747|Sphingobacteriia 976|Bacteroidetes G Bacterial alpha-L-rhamnosidase C-terminal domain - - 3.2.1.40 ko:K05989 - - - - ko00000,ko01000 - - - Bac_rhamnosid,Bac_rhamnosid6H,Bac_rhamnosid_C,Bac_rhamnosid_N DYD3_k127_5181688_0 1047013.AQSP01000142_gene205 9.028e-86 302.0 COG3408@1|root,COG3408@2|Bacteria 2|Bacteria G Glycogen debranching enzyme - - - - - - - - - - - - Bac_rhamnosid6H,Bac_rhamnosid_C,Big_4,CBM_6,Crystall,Glyco_hydro_64,RicinB_lectin_2,SLH,Trehalase DYD3_k127_5184716_1 700598.Niako_1563 1.123e-94 316.0 COG4591@1|root,COG4591@2|Bacteria,4NFWZ@976|Bacteroidetes,1IPU4@117747|Sphingobacteriia 976|Bacteroidetes M ABC-type transport system involved in lipoprotein release permease component lolE_1 - - ko:K09808 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko02000 3.A.1.125 - - FtsX,MacB_PCD DYD3_k127_5184716_2 700598.Niako_2010 3.982e-84 285.0 COG0566@1|root,COG0566@2|Bacteria,4NG1U@976|Bacteroidetes,1IQKS@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family aviRb - - ko:K03437 - - - - ko00000,ko03016 - - - SpoU_methylase,SpoU_sub_bind DYD3_k127_5184716_0 700598.Niako_2009 1.516e-126 417.0 COG4775@1|root,COG4775@2|Bacteria,4NE80@976|Bacteroidetes,1IPP9@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein protective antigen OMA87 - - - - - - - - - - - - Bac_surface_Ag,POTRA DYD3_k127_519288_1 700598.Niako_0740 3.141e-176 561.0 COG0823@1|root,COG0823@2|Bacteria,4NJJ5@976|Bacteroidetes,1IR8J@117747|Sphingobacteriia 976|Bacteroidetes U Oligogalacturonate lyase - - 4.2.2.6 ko:K01730 ko00040,map00040 - R04382 RC02124,RC02427 ko00000,ko00001,ko01000 - - - Pectate_lyase22 DYD3_k127_519288_0 700598.Niako_0741 5.239e-305 945.0 COG3250@1|root,COG3250@2|Bacteria,4NGZH@976|Bacteroidetes,1IWQR@117747|Sphingobacteriia 976|Bacteroidetes G alpha-L-rhamnosidase - - - - - - - - - - - - Glyco_hydro_106 DYD3_k127_5201198_0 1267211.KI669560_gene765 3.022e-26 113.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes,1IP6S@117747|Sphingobacteriia 976|Bacteroidetes H TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_5201198_1 1296416.JACB01000003_gene783 1.807e-06 58.0 2A33Y@1|root,30RJ0@2|Bacteria,4PDTV@976|Bacteroidetes,1II0C@117743|Flavobacteriia,2YKF8@290174|Aquimarina 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5204215_0 700598.Niako_7014 8.033e-138 447.0 COG2972@1|root,COG2972@2|Bacteria,4NHG3@976|Bacteroidetes,1INSV@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c_5,His_kinase DYD3_k127_5204215_3 700598.Niako_7015 2.515e-47 174.0 2EC7G@1|root,33661@2|Bacteria,4NWXP@976|Bacteroidetes,1IU01@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4288) - - - - - - - - - - - - DUF4288 DYD3_k127_5204215_2 700598.Niako_7016 1.016e-66 235.0 COG4758@1|root,COG4758@2|Bacteria,4NQRE@976|Bacteroidetes,1ISAD@117747|Sphingobacteriia 976|Bacteroidetes S membrane protein (DUF2154) - - - - - - - - - - - - DUF2154 DYD3_k127_5204215_1 700598.Niako_7017 2.426e-80 273.0 COG0664@1|root,COG0664@2|Bacteria,4NQ1A@976|Bacteroidetes,1IY7M@117747|Sphingobacteriia 976|Bacteroidetes T - catabolite gene activator and regulatory subunit of cAMP-dependent protein - - - - - - - - - - - - cNMP_binding DYD3_k127_520546_4 700598.Niako_0370 8.873e-86 286.0 COG0457@1|root,COG0457@2|Bacteria,4NEYK@976|Bacteroidetes,1IVUJ@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2911) - - - - - - - - - - - - DUF2911 DYD3_k127_520546_0 700598.Niako_0369 1.436e-149 483.0 COG0526@1|root,COG0526@2|Bacteria,4NEX3@976|Bacteroidetes,1IT79@117747|Sphingobacteriia 976|Bacteroidetes O PFAM AhpC TSA family - - - - - - - - - - - - AhpC-TSA,DUF4369 DYD3_k127_520546_3 700598.Niako_0368 1.615e-109 356.0 COG0139@1|root,COG0140@1|root,COG0139@2|Bacteria,COG0140@2|Bacteria,4NERE@976|Bacteroidetes,1INTS@117747|Sphingobacteriia 976|Bacteroidetes E Histidine biosynthesis bifunctional protein hisIE hisI - 3.5.4.19,3.6.1.31 ko:K11755 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035,R04037 RC00002,RC01055 ko00000,ko00001,ko00002,ko01000 - - - PRA-CH,PRA-PH DYD3_k127_520546_1 700598.Niako_0366 6.509e-143 456.0 COG0107@1|root,COG0107@2|Bacteria,4NE16@976|Bacteroidetes,1INX3@117747|Sphingobacteriia 976|Bacteroidetes E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit hisF GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - ko:K02500 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth DYD3_k127_520546_2 700598.Niako_0365 5.086e-122 394.0 COG0106@1|root,COG0454@1|root,COG0106@2|Bacteria,COG0454@2|Bacteria,4NEEX@976|Bacteroidetes,1IW2E@117747|Sphingobacteriia 976|Bacteroidetes E 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase hisA GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 ko:K01814 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04640 RC00945 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth DYD3_k127_520546_5 700598.Niako_0364 1.83e-32 126.0 COG0118@1|root,COG0118@2|Bacteria,4NF4J@976|Bacteroidetes,1IT1P@117747|Sphingobacteriia 976|Bacteroidetes E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR hisH - - ko:K02501 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - GATase DYD3_k127_5213996_0 1122605.KB893646_gene117 4.719e-223 708.0 COG4206@1|root,COG4206@2|Bacteria,4PHXJ@976|Bacteroidetes,1IX3K@117747|Sphingobacteriia 976|Bacteroidetes H Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarbopepD_reg_2,Plug DYD3_k127_5213996_1 1121870.AUAA01000008_gene403 1.303e-121 401.0 COG4804@1|root,COG4804@2|Bacteria,4NGY8@976|Bacteroidetes,1HZ5U@117743|Flavobacteriia,3HHP6@358033|Chryseobacterium 976|Bacteroidetes S Protein of unknown function (DUF1016) - - - - - - - - - - - - DUF1016 DYD3_k127_521517_1 700598.Niako_5688 3.791e-118 383.0 COG1670@1|root,COG1670@2|Bacteria,4PKMC@976|Bacteroidetes,1IR6P@117747|Sphingobacteriia 976|Bacteroidetes J acetyltransferase - - - - - - - - - - - - Acetyltransf_1 DYD3_k127_521517_2 1185876.BN8_04088 2.872e-88 299.0 COG0596@1|root,COG0596@2|Bacteria,4PN1Y@976|Bacteroidetes,47Y5J@768503|Cytophagia 976|Bacteroidetes S Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_521517_0 700598.Niako_5687 4.92e-137 438.0 COG1646@1|root,COG1646@2|Bacteria,4NER8@976|Bacteroidetes,1IW5Q@117747|Sphingobacteriia 976|Bacteroidetes I Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) pcrB - - ko:K07094 - - - - ko00000,ko01000 - - - PcrB DYD3_k127_523014_0 1185876.BN8_06481 5.322e-81 282.0 COG2972@1|root,COG2972@2|Bacteria,4NH1Q@976|Bacteroidetes,47PMI@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_523014_1 1185876.BN8_06479 1.507e-80 274.0 COG3279@1|root,COG3279@2|Bacteria,4NI3K@976|Bacteroidetes,47PDV@768503|Cytophagia 976|Bacteroidetes T LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_5246746_3 700598.Niako_5945 1.575e-43 165.0 COG3712@1|root,COG3712@2|Bacteria,4NE6N@976|Bacteroidetes,1IPV8@117747|Sphingobacteriia 976|Bacteroidetes PT COG3712 Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_5246746_0 1123248.KB893315_gene2971 0.0 1159.0 COG1629@1|root,COG4771@2|Bacteria,4NF4B@976|Bacteroidetes,1IPX2@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_5246746_2 1123248.KB893326_gene1252 6.442e-75 259.0 28PKM@1|root,2ZCA0@2|Bacteria,4NPIB@976|Bacteroidetes,1ISNN@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4249) - - - - - - - - - - - - DUF4249 DYD3_k127_5246746_1 468059.AUHA01000002_gene1006 8.438e-167 527.0 2DBD9@1|root,2Z8J6@2|Bacteria,4NHNA@976|Bacteroidetes,1IV3U@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5251113_1 700598.Niako_6646 1.585e-141 458.0 COG2114@1|root,COG2114@2|Bacteria,4NG5A@976|Bacteroidetes,1IT6K@117747|Sphingobacteriia 976|Bacteroidetes T Adenylyl- / guanylyl cyclase, catalytic domain - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_cyc DYD3_k127_5251113_4 700598.Niako_6645 8.124e-17 85.0 2BZK2@1|root,2ZMZ7@2|Bacteria,4P8S6@976|Bacteroidetes,1IZJK@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5251113_0 700598.Niako_6644 0.0 1161.0 COG0674@1|root,COG1014@1|root,COG0674@2|Bacteria,COG1014@2|Bacteria,4NEP3@976|Bacteroidetes,1IYHV@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Pyruvate flavodoxin ferredoxin oxidoreductase porA - 1.2.7.11,1.2.7.3 ko:K00174 ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200 M00009,M00011,M00173,M00620 R01196,R01197 RC00004,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - PFOR_II,POR,POR_N DYD3_k127_5251113_3 1122605.KB893645_gene1166 6.087e-68 242.0 COG0726@1|root,COG0726@2|Bacteria,4NRNQ@976|Bacteroidetes,1ITDT@117747|Sphingobacteriia 976|Bacteroidetes G Polysaccharide deacetylase - - - - - - - - - - - - Polysacc_deac_1 DYD3_k127_5251113_2 700598.Niako_6642 5.834e-132 425.0 COG1472@1|root,COG1680@1|root,COG1472@2|Bacteria,COG1680@2|Bacteria,4NET8@976|Bacteroidetes,1IRDG@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycosyl hydrolase family 3 N terminal domain - - - - - - - - - - - - Beta-lactamase,Glyco_hydro_3,Glyco_hydro_3_C DYD3_k127_5254317_2 700598.Niako_4993 1.822e-157 504.0 COG3291@1|root,COG3291@2|Bacteria,4PN6M@976|Bacteroidetes,1IW1H@117747|Sphingobacteriia 976|Bacteroidetes S Chondroitinase B - - - - - - - - - - - - Chondroitinas_B DYD3_k127_5254317_1 700598.Niako_5368 3.699e-229 717.0 COG3669@1|root,COG3669@2|Bacteria,4NE74@976|Bacteroidetes,1IVQ5@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-L-fucosidase - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos DYD3_k127_5254317_0 485917.Phep_1710 2.373e-231 724.0 COG5434@1|root,COG5434@2|Bacteria,4NFSC@976|Bacteroidetes,1IUST@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Glycosyl hydrolases family 28 - - - - - - - - - - - - Glyco_hydro_28,Pectate_lyase_3 DYD3_k127_5260454_3 485918.Cpin_2574 2.893e-117 382.0 COG0296@1|root,COG0296@2|Bacteria,4PKT8@976|Bacteroidetes,1IQBN@117747|Sphingobacteriia 976|Bacteroidetes G SMART Glycosyl hydrolase, family 13, subfamily, catalytic - - 3.2.1.141 ko:K01236 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R09995,R11256 RC00049 ko00000,ko00001,ko00002,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48,DUF3459 DYD3_k127_5260454_0 1185876.BN8_02101 0.0 1152.0 COG1523@1|root,COG1523@2|Bacteria,4NIH2@976|Bacteroidetes,47KIY@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 13 family glgX - 3.2.1.41,3.2.1.68 ko:K01200,ko:K01214 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R02111,R09995,R11261 - ko00000,ko00001,ko00002,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48 DYD3_k127_5260454_5 700598.Niako_4406 5.384e-30 120.0 COG1595@1|root,COG1595@2|Bacteria,4NR0P@976|Bacteroidetes,1J0AP@117747|Sphingobacteriia 976|Bacteroidetes K PFAM RNA polymerase sigma factor 70, region 4 type 2 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_5260454_2 700598.Niako_4402 1.176e-177 565.0 COG1331@1|root,COG1331@2|Bacteria,4PKHP@976|Bacteroidetes,1IR37@117747|Sphingobacteriia 976|Bacteroidetes O Glycosyl Hydrolase Family 88 - - - - - - - - - - - - Glyco_hydro_88 DYD3_k127_5260454_1 1123248.KB893370_gene5110 3.143e-182 577.0 COG4289@1|root,COG4289@2|Bacteria,4NEU3@976|Bacteroidetes,1IP4X@117747|Sphingobacteriia 976|Bacteroidetes S Uncharacterized protein conserved in bacteria (DUF2264) - - - - - - - - - - - - DUF2264 DYD3_k127_5260454_4 1134474.O59_001270 2.764e-52 189.0 COG1295@1|root,COG1295@2|Bacteria,1R9UY@1224|Proteobacteria,1S11F@1236|Gammaproteobacteria,1FI1D@10|Cellvibrio 1236|Gammaproteobacteria S Virulence factor BrkB - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB DYD3_k127_5260912_0 700598.Niako_5653 2.696e-114 372.0 COG1858@1|root,COG1858@2|Bacteria,4NE4P@976|Bacteroidetes,1IW4H@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Di-haem cytochrome c peroxidase - - 1.11.1.5 ko:K00428 - - - - ko00000,ko01000 - - - CCP_MauG,Cytochrom_C DYD3_k127_5260912_2 1267211.KI669560_gene2746 5.599e-27 113.0 COG2244@1|root,COG2244@2|Bacteria,4NDZ0@976|Bacteroidetes,1IPM6@117747|Sphingobacteriia 976|Bacteroidetes S Polysaccharide biosynthesis protein cap - - - - - - - - - - - Polysacc_synt,Polysacc_synt_3,Polysacc_synt_C DYD3_k127_5263615_2 926549.KI421517_gene712 0.0008264 43.0 COG0346@1|root,COG0346@2|Bacteria,4NQRK@976|Bacteroidetes,47R6X@768503|Cytophagia 976|Bacteroidetes E bleomycin resistance protein - - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase DYD3_k127_5263615_1 700598.Niako_2023 2.258e-38 145.0 COG5512@1|root,COG5512@2|Bacteria,4P9X5@976|Bacteroidetes,1IUES@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF721) - - - - - - - - - - - - DUF721 DYD3_k127_5263615_0 700598.Niako_2024 2.148e-73 252.0 COG1195@1|root,COG1195@2|Bacteria,4NFHN@976|Bacteroidetes,1IP1J@117747|Sphingobacteriia 976|Bacteroidetes L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP recF GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - ko:K03629 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - AAA_15,SMC_N DYD3_k127_5264671_1 391596.PBAL39_13522 5.412e-187 589.0 COG3537@1|root,COG3537@2|Bacteria,4NDYB@976|Bacteroidetes,1IQ4G@117747|Sphingobacteriia 976|Bacteroidetes G PFAM glycosyl hydrolase 92 - - - - - - - - - - - - Glyco_hydro_92 DYD3_k127_5264671_0 929713.NIASO_00495 1.193e-187 595.0 28I74@1|root,2Z8A0@2|Bacteria,4NIGF@976|Bacteroidetes 976|Bacteroidetes S COG NOG26804 non supervised orthologous group - - - - - - - - - - - - - DYD3_k127_5266754_0 760192.Halhy_2193 3.852e-170 549.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IW4Z@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5267958_1 742767.HMPREF9456_00598 1.022e-81 279.0 COG2265@1|root,COG2265@2|Bacteria,4NFP1@976|Bacteroidetes,2FNRC@200643|Bacteroidia,22X3X@171551|Porphyromonadaceae 976|Bacteroidetes J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family rumA - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr DYD3_k127_5267958_0 945713.IALB_2618 1.526e-97 323.0 COG3033@1|root,COG3033@2|Bacteria 2|Bacteria E tryptophanase activity tnaA - 4.1.99.1 ko:K01667 ko00380,map00380 - R00673 RC00209,RC00355 ko00000,ko00001,ko01000 - - - Beta_elim_lyase DYD3_k127_5283292_1 517417.Cpar_0065 1.651e-06 56.0 COG0657@1|root,COG0657@2|Bacteria 2|Bacteria I acetylesterase activity - - - - - - - - - - - - Abhydrolase_3 DYD3_k127_5283292_0 861299.J421_1342 2.951e-42 171.0 COG2207@1|root,COG2207@2|Bacteria 2|Bacteria K Transcriptional regulator - - - - - - - - - - - - HTH_18 DYD3_k127_5298991_2 929703.KE386491_gene83 1.396e-104 347.0 COG1277@1|root,COG1277@2|Bacteria,4NDY9@976|Bacteroidetes,47JBW@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF3526) - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,DUF3526 DYD3_k127_5298991_1 929703.KE386491_gene82 9.427e-155 502.0 COG1277@1|root,COG1277@2|Bacteria,4NHSU@976|Bacteroidetes,47NHA@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF3526) - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,DUF3526 DYD3_k127_5298991_3 1338011.BD94_2303 1.014e-103 341.0 COG1131@1|root,COG1131@2|Bacteria,4NE3Z@976|Bacteroidetes,1HYPK@117743|Flavobacteriia,34PIC@308865|Elizabethkingia 976|Bacteroidetes V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_5298991_0 1317122.ATO12_21475 3.518e-272 856.0 COG2091@1|root,COG2091@2|Bacteria,4NFQ6@976|Bacteroidetes,1HZHJ@117743|Flavobacteriia,2YIN8@290174|Aquimarina 976|Bacteroidetes H Carbohydrate family 9 binding domain-like - - - - - - - - - - - - CBM9_1 DYD3_k127_5298991_4 1346330.M472_13955 6.203e-50 187.0 COG0457@1|root,COG0457@2|Bacteria,4NHEF@976|Bacteroidetes 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - TPR_19,TPR_8 DYD3_k127_5298991_5 1121373.KB903627_gene2935 6.13e-10 66.0 COG3405@1|root,COG4886@1|root,COG3405@2|Bacteria,COG4886@2|Bacteria 2|Bacteria S regulation of response to stimulus - - - - - - - - - - - - Big_4,CHU_C,CW_binding_2,Flg_new,LRR_4,LRR_5 DYD3_k127_5299049_0 1116472.MGMO_17c00060 4.9e-201 658.0 COG3829@1|root,COG3829@2|Bacteria,1NU8B@1224|Proteobacteria,1RMHY@1236|Gammaproteobacteria,1XEIK@135618|Methylococcales 135618|Methylococcales KT PFAM RNA polymerase sigma factor 54, interaction - - - - - - - - - - - - HTH_8,PAS_4,Sigma54_activat DYD3_k127_5299049_2 471854.Dfer_5395 1.565e-33 133.0 COG0640@1|root,COG0640@2|Bacteria,4NSDX@976|Bacteroidetes,47R1P@768503|Cytophagia 976|Bacteroidetes K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20,HTH_5 DYD3_k127_5299049_1 1122179.KB890414_gene1906 1.359e-62 218.0 COG3832@1|root,COG3832@2|Bacteria,4NR9F@976|Bacteroidetes,1IYGM@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 DYD3_k127_5302221_3 272624.lpg0270 2.543e-103 344.0 COG1488@1|root,COG1488@2|Bacteria,1Q8H0@1224|Proteobacteria,1SY3D@1236|Gammaproteobacteria,1JD9U@118969|Legionellales 118969|Legionellales F Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP pncB - 6.3.4.21 ko:K00763 ko00760,ko01100,map00760,map01100 - R01724 RC00033 ko00000,ko00001,ko01000 - - - NAPRTase DYD3_k127_5302221_4 1123248.KB893359_gene2202 2.661e-55 199.0 29EPR@1|root,301MK@2|Bacteria,4NQPA@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5302221_7 192952.MM_0232 2.173e-34 136.0 COG3324@1|root,arCOG04946@2157|Archaea,2Y3YR@28890|Euryarchaeota,2NB03@224756|Methanomicrobia 224756|Methanomicrobia S Glyoxalase-like domain - - - ko:K06996 - - - - ko00000 - - - - DYD3_k127_5302221_8 468059.AUHA01000003_gene1717 9.4e-23 104.0 28TBW@1|root,2ZFKC@2|Bacteria,4P6SF@976|Bacteroidetes,1IZM1@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5302221_2 1123248.KB893386_gene1933 3.513e-122 400.0 COG2187@1|root,COG2187@2|Bacteria,4NKD3@976|Bacteroidetes,1IXH4@117747|Sphingobacteriia 976|Bacteroidetes S AAA domain - - - ko:K07028 - - - - ko00000 - - - AAA_33 DYD3_k127_5302221_5 1123248.KB893386_gene1934 2.237e-53 192.0 COG0645@1|root,COG0645@2|Bacteria,4NSKU@976|Bacteroidetes,1J033@117747|Sphingobacteriia 976|Bacteroidetes S Chromatin associated protein KTI12 - - - - - - - - - - - - AAA_33 DYD3_k127_5302221_1 1131812.JQMS01000001_gene2157 6.442e-124 416.0 COG1283@1|root,COG1283@2|Bacteria,4NHMY@976|Bacteroidetes,1HYFK@117743|Flavobacteriia,2NWFB@237|Flavobacterium 976|Bacteroidetes P Na+/Pi-cotransporter - - - ko:K03324 - - - - ko00000,ko02000 2.A.58.2 - - Na_Pi_cotrans DYD3_k127_5302221_6 1123248.KB893359_gene2200 2.458e-48 183.0 COG4978@1|root,COG4978@2|Bacteria,4P4Z3@976|Bacteroidetes,1IYCN@117747|Sphingobacteriia 976|Bacteroidetes KT Bacterial transcription activator, effector binding domain - - - - - - - - - - - - GyrI-like DYD3_k127_5302221_9 700598.Niako_1893 9.428e-16 78.0 COG0589@1|root,COG0589@2|Bacteria,4NI7R@976|Bacteroidetes,1INVG@117747|Sphingobacteriia 976|Bacteroidetes T response to stress - - - - - - - - - - - - Usp DYD3_k127_5302221_0 1237149.C900_00304 7.642e-126 411.0 COG0465@1|root,COG0465@2|Bacteria,4NF0E@976|Bacteroidetes,47KKF@768503|Cytophagia 976|Bacteroidetes O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 DYD3_k127_5303951_3 925409.KI911562_gene941 1.5e-73 252.0 COG4314@1|root,COG4314@2|Bacteria,4NIPU@976|Bacteroidetes,1IR80@117747|Sphingobacteriia 976|Bacteroidetes C lipoprotein involved in nitrous oxide reduction - - - ko:K19342 - - - - ko00000 - - - NosL DYD3_k127_5303951_0 925409.KI911562_gene940 0.0 1084.0 COG4263@1|root,COG4263@2|Bacteria,4NFNE@976|Bacteroidetes,1IQ1B@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Cytochrome C oxidase subunit II, periplasmic domain nosZ - 1.7.2.4 ko:K00376 ko00910,ko01120,map00910,map01120 M00529 R02804 RC02861 ko00000,ko00001,ko00002,ko01000 - - - - DYD3_k127_5303951_4 925409.KI911562_gene939 5.054e-56 200.0 COG2010@1|root,COG2010@2|Bacteria,4NMD5@976|Bacteroidetes,1IY7U@117747|Sphingobacteriia 976|Bacteroidetes C Cytochrome c - - - - - - - - - - - - Cytochrom_C DYD3_k127_5303951_9 1279009.ADICEAN_01928 5.336e-25 109.0 COG1959@1|root,COG1959@2|Bacteria,4NQGU@976|Bacteroidetes,47RNG@768503|Cytophagia 976|Bacteroidetes K Transcriptional regulator - - - - - - - - - - - - Rrf2 DYD3_k127_5303951_2 925409.KI911562_gene946 3.971e-89 300.0 COG2846@1|root,COG4309@1|root,COG2846@2|Bacteria,COG4309@2|Bacteria,4NE9M@976|Bacteroidetes,1IS5X@117747|Sphingobacteriia 976|Bacteroidetes D Di-iron-containing protein involved in the repair of iron-sulfur clusters - - - ko:K07322 - - - - ko00000 - - - DUF2249,Hemerythrin,ScdA_N DYD3_k127_5303951_8 1124780.ANNU01000013_gene3822 1.273e-35 141.0 COG5592@1|root,COG5592@2|Bacteria,4NP8M@976|Bacteroidetes,47S5H@768503|Cytophagia 976|Bacteroidetes S hemerythrin HHE cation binding domain - - - - - - - - - - - - Hemerythrin DYD3_k127_5303951_5 925409.KI911562_gene950 1.955e-52 188.0 COG1959@1|root,COG1959@2|Bacteria,4NQGU@976|Bacteroidetes 976|Bacteroidetes K transcriptional regulator - - - - - - - - - - - - Rrf2 DYD3_k127_5303951_1 641524.ADICYQ_4554 1.236e-144 479.0 COG4251@1|root,COG4251@2|Bacteria,4NHEM@976|Bacteroidetes,47QEB@768503|Cytophagia 976|Bacteroidetes T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - DUF4154,HATPase_c,HisKA,PAS,PAS_9 DYD3_k127_5303951_6 1121930.AQXG01000003_gene2460 4.551e-48 175.0 COG0745@1|root,COG0745@2|Bacteria,4NRCB@976|Bacteroidetes 976|Bacteroidetes T COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - Response_reg DYD3_k127_5303951_7 1267211.KI669560_gene164 1.202e-40 163.0 COG2197@1|root,COG4585@1|root,COG2197@2|Bacteria,COG4585@2|Bacteria,4NK7B@976|Bacteroidetes,1IW3P@117747|Sphingobacteriia 976|Bacteroidetes T signal transduction histidine kinase - - 2.7.13.3 ko:K07675 ko02020,map02020 M00473 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA_3,PAS_3,PAS_9,Response_reg DYD3_k127_5327626_0 700598.Niako_6273 1.493e-67 232.0 COG3279@1|root,COG3279@2|Bacteria,4NI3K@976|Bacteroidetes,1J04H@117747|Sphingobacteriia 976|Bacteroidetes K Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_5327626_1 397288.C806_01791 6.339e-10 71.0 COG4193@1|root,COG5492@1|root,COG4193@2|Bacteria,COG5492@2|Bacteria,1TRTM@1239|Firmicutes,24C4N@186801|Clostridia,27K3Z@186928|unclassified Lachnospiraceae 186801|Clostridia G SH3 domain protein - - - - - - - - - - - - Big_2,Cadherin-like,Dockerin_1,Glucosaminidase,SH3_3 DYD3_k127_5330939_2 700598.Niako_6493 6.359e-30 121.0 COG2267@1|root,COG2267@2|Bacteria,4NPD2@976|Bacteroidetes,1ITX3@117747|Sphingobacteriia 976|Bacteroidetes I PFAM alpha beta hydrolase fold - - - - - - - - - - - - Abhydrolase_1,Hydrolase_4 DYD3_k127_5330939_0 700598.Niako_6492 6.553e-150 485.0 COG1215@1|root,COG1215@2|Bacteria,4NG9C@976|Bacteroidetes,1IPRP@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glyco_tranf_2_3,Glycos_transf_2 DYD3_k127_5330939_1 700598.Niako_6491 1.006e-132 434.0 COG1173@1|root,COG1173@2|Bacteria,4NGTQ@976|Bacteroidetes,1IQI5@117747|Sphingobacteriia 976|Bacteroidetes EP PFAM Binding-protein-dependent transport system inner membrane component dppC - - ko:K02034 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1,OppC_N DYD3_k127_5330939_3 1254432.SCE1572_29780 1.665e-23 102.0 COG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria 1224|Proteobacteria Q Non-ribosomal peptide synthetase modules and related proteins - - - - - - - - - - - - AMP-binding,AMP-binding_C,Acyl_transf_1,Condensation,KAsynt_C_assoc,Ketoacyl-synt_C,PP-binding,Thioesterase,ketoacyl-synt DYD3_k127_5332190_3 330214.NIDE0254 9.099e-39 150.0 COG0006@1|root,COG0006@2|Bacteria 2|Bacteria E proline dipeptidase activity - - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 DYD3_k127_5332190_0 700598.Niako_4704 9.685e-270 834.0 COG0457@1|root,COG4783@1|root,COG0457@2|Bacteria,COG4783@2|Bacteria,4NG1I@976|Bacteroidetes,1IPQK@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_16,TPR_19,TPR_2,TPR_6,TPR_7,TPR_8 DYD3_k127_5332190_2 700598.Niako_4706 3.439e-105 344.0 2DS3S@1|root,33EDT@2|Bacteria,4NY8U@976|Bacteroidetes,1IUQ6@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5332190_1 700598.Niako_4707 7.456e-113 367.0 COG0706@1|root,COG0706@2|Bacteria,4NESJ@976|Bacteroidetes,1IQAZ@117747|Sphingobacteriia 976|Bacteroidetes U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins yidC - - ko:K03217 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP,YidC_periplas DYD3_k127_5332510_3 700598.Niako_6656 2.516e-23 100.0 COG1131@1|root,COG1131@2|Bacteria,4NEH0@976|Bacteroidetes,1IQ87@117747|Sphingobacteriia 976|Bacteroidetes V COG1131 ABC-type multidrug transport system ATPase component gldA - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_5332510_2 1408813.AYMG01000013_gene1215 7.021e-31 129.0 2F3JF@1|root,33WCZ@2|Bacteria,4P31W@976|Bacteroidetes,1IY3U@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5332510_0 1267211.KI669560_gene2859 6.689e-225 702.0 COG0148@1|root,COG0148@2|Bacteria,4NF5M@976|Bacteroidetes,1IP9V@117747|Sphingobacteriia 976|Bacteroidetes G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis eno - 4.2.1.11 ko:K01689 ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066 M00001,M00002,M00003,M00346,M00394 R00658 RC00349 ko00000,ko00001,ko00002,ko01000,ko03019,ko04147 - - - Enolase_C,Enolase_N DYD3_k127_5355682_1 485917.Phep_2696 7.002e-50 178.0 2DB8U@1|root,2Z7SW@2|Bacteria,4NEUK@976|Bacteroidetes,1IP0I@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Alginate lyase - - - - - - - - - - - - Alginate_lyase DYD3_k127_5355682_0 700598.Niako_5369 1.662e-177 563.0 COG4225@1|root,COG4225@2|Bacteria,4NDYS@976|Bacteroidetes,1IPDE@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Glycosyl Hydrolase Family 88 - - - - - - - - - - - - Glyco_hydro_88 DYD3_k127_5358320_2 700598.Niako_5768 1.065e-82 282.0 COG0340@1|root,COG0340@2|Bacteria,4NHCH@976|Bacteroidetes,1IS0E@117747|Sphingobacteriia 976|Bacteroidetes H PFAM Biotin lipoate A B protein ligase birA - 6.3.4.15 ko:K03524 ko00780,ko01100,map00780,map01100 - R01074,R05145 RC00043,RC00070,RC00096,RC02896 ko00000,ko00001,ko01000,ko03000 - - - BPL_LplA_LipB DYD3_k127_5358320_3 700598.Niako_5767 3.904e-64 221.0 COG0799@1|root,COG0799@2|Bacteria,4NSKK@976|Bacteroidetes,1ISS0@117747|Sphingobacteriia 976|Bacteroidetes S Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation rsfS - - ko:K09710 - - - - ko00000,ko03009 - - - RsfS DYD3_k127_5358320_0 1123248.KB893319_gene4072 4.341e-312 968.0 COG0465@1|root,COG0465@2|Bacteria,4NF0E@976|Bacteroidetes,1IQ2Z@117747|Sphingobacteriia 976|Bacteroidetes O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 DYD3_k127_5358320_1 700598.Niako_5765 3.076e-88 294.0 COG1556@1|root,COG1556@2|Bacteria,4NIGX@976|Bacteroidetes,1IRJ2@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Uncharacterised ACR, YkgG family COG1556 - - - ko:K00782 - - - - ko00000 - - - LUD_dom DYD3_k127_536165_1 700598.Niako_3007 4.307e-100 334.0 COG0823@1|root,COG0823@2|Bacteria,4NGPR@976|Bacteroidetes,1IQHQ@117747|Sphingobacteriia 976|Bacteroidetes U Involved in the tonB-independent uptake of proteins - - - - - - - - - - - - - DYD3_k127_536165_0 1237149.C900_01563 2.095e-145 475.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47NTJ@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_536195_0 471854.Dfer_1457 4.274e-68 236.0 COG2353@1|root,COG2353@2|Bacteria,4NPU7@976|Bacteroidetes 976|Bacteroidetes S YceI-like domain - - - - - - - - - - - - YceI DYD3_k127_536195_1 714943.Mucpa_7147 3.912e-46 190.0 COG0745@1|root,COG3292@1|root,COG5002@1|root,COG0745@2|Bacteria,COG3292@2|Bacteria,COG5002@2|Bacteria,4P0IA@976|Bacteroidetes,1IRID@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_5362971_6 700598.Niako_4499 2.217e-29 121.0 COG0797@1|root,COG0797@2|Bacteria,4NSF1@976|Bacteroidetes 976|Bacteroidetes M Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides rlpA - - ko:K03642 - - - - ko00000 - - - DPBB_1,SPOR DYD3_k127_5362971_2 485918.Cpin_6595 1.519e-124 419.0 COG2989@1|root,COG2989@2|Bacteria,4NH3J@976|Bacteroidetes,1IVIF@117747|Sphingobacteriia 976|Bacteroidetes S L,D-transpeptidase catalytic domain - - - ko:K21470 - - - - ko00000,ko01002,ko01011 - - - PG_binding_1,YkuD DYD3_k127_5362971_4 700598.Niako_4501 4.215e-88 301.0 COG2173@1|root,COG2173@2|Bacteria,4NE2K@976|Bacteroidetes,1IS0X@117747|Sphingobacteriia 976|Bacteroidetes M Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide vanX - 3.4.13.22 ko:K08641 ko01502,ko02020,map01502,map02020 M00651 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504 - - - Peptidase_M15 DYD3_k127_5362971_5 700598.Niako_4502 9.679e-46 166.0 COG0011@1|root,COG0011@2|Bacteria 2|Bacteria H TIGRFAM Protein of M1-594 - - - - - - - - - - - Thiamine_BP DYD3_k127_5362971_7 1267211.KI669560_gene2256 4.885e-26 109.0 COG3502@1|root,COG3502@2|Bacteria,4NV0K@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function (DUF952) - - - - - - - - - - - - DUF952 DYD3_k127_5362971_1 1123248.KB893317_gene4331 1.381e-176 557.0 COG0082@1|root,COG0082@2|Bacteria,4NDXJ@976|Bacteroidetes,1IQ18@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system aroC GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 ko:K01736 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01714 RC00586 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_synt DYD3_k127_5362971_0 700598.Niako_4504 2.511e-197 622.0 COG0128@1|root,COG0128@2|Bacteria,4NE8T@976|Bacteroidetes,1IQJK@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate aroA - 2.5.1.19 ko:K00800 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03460 RC00350 ko00000,ko00001,ko00002,ko01000 - - - EPSP_synthase DYD3_k127_5362971_3 700598.Niako_4505 9.255e-99 325.0 COG0337@1|root,COG0337@2|Bacteria,4NGSS@976|Bacteroidetes,1IQ2Q@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) aroB - 4.2.3.4 ko:K01735 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03083 RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase DYD3_k127_5365510_0 221288.JH992901_gene2214 3.263e-101 358.0 COG3540@1|root,COG3540@2|Bacteria,1G27Q@1117|Cyanobacteria,1JHN5@1189|Stigonemataceae 1117|Cyanobacteria P PFAM PhoD-like phosphatase - - - - - - - - - - - - - DYD3_k127_5365510_1 102129.Lepto7375DRAFT_1471 1.862e-36 142.0 COG3540@1|root,COG3540@2|Bacteria,1G27Q@1117|Cyanobacteria,1H9KJ@1150|Oscillatoriales 1117|Cyanobacteria P PFAM PhoD-like phosphatase - - - - - - - - - - - - - DYD3_k127_5370755_0 929556.Solca_2149 1.56e-318 991.0 COG3422@1|root,COG3422@2|Bacteria,4NHE4@976|Bacteroidetes,1IP8Z@117747|Sphingobacteriia 976|Bacteroidetes S double-strand break repair - - - - - - - - - - - - - DYD3_k127_5370755_1 929556.Solca_2150 6.239e-23 99.0 COG3299@1|root,COG3299@2|Bacteria,4NF69@976|Bacteroidetes,1INRV@117747|Sphingobacteriia 976|Bacteroidetes S homolog of phage Mu protein gp47 - - - - - - - - - - - - Baseplate_J DYD3_k127_5371037_2 525257.HMPREF0204_11457 1.004e-08 57.0 COG4095@1|root,COG4095@2|Bacteria,4NUQW@976|Bacteroidetes,1I5DC@117743|Flavobacteriia,3ZU7B@59732|Chryseobacterium 976|Bacteroidetes S PQ loop repeat - - - ko:K15383 - - - - ko00000,ko02000 9.A.58.2 - - MtN3_slv,PQ-loop DYD3_k127_5371037_0 1121897.AUGO01000002_gene2184 1.165e-109 379.0 COG1305@1|root,COG1305@2|Bacteria,4NI6P@976|Bacteroidetes,1HYIY@117743|Flavobacteriia,2NTEA@237|Flavobacterium 976|Bacteroidetes E Transglutaminase-like superfamily - - - - - - - - - - - - DUF3857,DUF3858,Transglut_core DYD3_k127_5371037_1 592029.DDD_2722 7.414e-24 117.0 2C80G@1|root,2Z7ZW@2|Bacteria,4NNAX@976|Bacteroidetes,1I0PF@117743|Flavobacteriia,3HKZ6@363408|Nonlabens 976|Bacteroidetes S Domain of Unknown Function with PDB structure (DUF3857) - - - - - - - - - - - - DUF3857 DYD3_k127_5380674_2 714943.Mucpa_3270 7.808e-45 171.0 COG1132@1|root,COG1132@2|Bacteria,4NIFZ@976|Bacteroidetes,1IV2P@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1132 ABC-type multidrug transport system ATPase and permease components - - - ko:K06148 - - - - ko00000,ko02000 3.A.1 - - ABC_membrane,ABC_tran DYD3_k127_5380674_3 1236508.BAKF01000081_gene2599 7.717e-26 116.0 COG3209@1|root,COG3209@2|Bacteria,4NF0G@976|Bacteroidetes,2FRC8@200643|Bacteroidia 976|Bacteroidetes M RHS repeat-associated core domain protein - - - - - - - - - - - - SpvB,TcdB_toxin_midC,TcdB_toxin_midN DYD3_k127_5380674_1 700598.Niako_4328 1.021e-77 261.0 COG1051@1|root,COG1051@2|Bacteria,4NR5C@976|Bacteroidetes,1ISSM@117747|Sphingobacteriia 976|Bacteroidetes F pfam nudix - - - - - - - - - - - - NUDIX DYD3_k127_5380674_0 700598.Niako_4327 2.147e-176 556.0 COG0598@1|root,COG0598@2|Bacteria,4NGM7@976|Bacteroidetes,1IWM4@117747|Sphingobacteriia 976|Bacteroidetes P Mg2 transporter protein, CorA family protein corA - - ko:K03284 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3 - - CorA DYD3_k127_5380674_4 313606.M23134_00506 4.836e-14 73.0 COG2318@1|root,COG2318@2|Bacteria 2|Bacteria S DinB family - - - - - - - - - - - - DinB_2 DYD3_k127_5381183_0 700598.Niako_6197 6.175e-185 589.0 COG1752@1|root,COG1752@2|Bacteria,4NUHF@976|Bacteroidetes 976|Bacteroidetes S Esterase of the alpha-beta hydrolase superfamily - - - - - - - - - - - - Patatin DYD3_k127_5381183_1 700598.Niako_6198 4.548e-149 474.0 COG0536@1|root,COG0536@2|Bacteria,4NEK4@976|Bacteroidetes,1IP1F@117747|Sphingobacteriia 976|Bacteroidetes S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control obg - - ko:K03979 - - - - ko00000,ko01000,ko03009 - - - GTP1_OBG,MMR_HSR1 DYD3_k127_5384463_2 761193.Runsl_1328 3.66e-31 126.0 COG0262@1|root,COG0262@2|Bacteria,4NJIQ@976|Bacteroidetes,47PHT@768503|Cytophagia 976|Bacteroidetes H RibD C-terminal domain - - 1.5.1.3 ko:K00287 ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523 M00126,M00840 R00936,R00937,R00939,R00940,R02235,R02236,R11765 RC00109,RC00110,RC00158 ko00000,ko00001,ko00002,ko01000 - - - RibD_C DYD3_k127_5384463_1 1121007.AUML01000003_gene2633 3.365e-32 137.0 COG2207@1|root,COG2207@2|Bacteria,4NHA5@976|Bacteroidetes,1I053@117743|Flavobacteriia,2YGI4@290174|Aquimarina 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_5384463_0 1123248.KB893337_gene2570 1.247e-78 270.0 COG2146@1|root,COG4244@1|root,COG2146@2|Bacteria,COG4244@2|Bacteria,4NPHV@976|Bacteroidetes 976|Bacteroidetes P Predicted membrane protein (DUF2231) - - - - - - - - - - - - DUF2231 DYD3_k127_5403985_2 1035193.HMPREF9073_03072 6.934e-06 53.0 COG4099@1|root,COG4099@2|Bacteria,4NFSH@976|Bacteroidetes,1HY30@117743|Flavobacteriia,1ER7P@1016|Capnocytophaga 976|Bacteroidetes S Phospholipase/Carboxylesterase - - - - - - - - - - - - Abhydrolase_2,Esterase,Peptidase_S9 DYD3_k127_5403985_0 509635.N824_25365 1.677e-104 350.0 COG0523@1|root,COG0523@2|Bacteria,4P1A4@976|Bacteroidetes,1IW1I@117747|Sphingobacteriia 976|Bacteroidetes S CobW/HypB/UreG, nucleotide-binding domain - - - - - - - - - - - - cobW DYD3_k127_5403985_1 714943.Mucpa_3678 3.984e-87 297.0 COG2207@1|root,COG2207@2|Bacteria,4NE6T@976|Bacteroidetes,1INM9@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - - - - - - - - - - AraC_binding,Cupin_2,HTH_18 DYD3_k127_541115_0 700598.Niako_0965 5.417e-264 820.0 COG1070@1|root,COG1070@2|Bacteria,4NFBZ@976|Bacteroidetes,1IQMH@117747|Sphingobacteriia 976|Bacteroidetes G PFAM FGGY family of carbohydrate kinases, N-terminal domain xylB_2 - 2.7.1.17 ko:K00854 ko00040,ko01100,map00040,map01100 M00014 R01639 RC00002,RC00538 ko00000,ko00001,ko00002,ko01000 - - - FGGY_C,FGGY_N DYD3_k127_541115_2 700598.Niako_0964 1.86e-141 453.0 COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,4NJIM@976|Bacteroidetes,1IX9Z@117747|Sphingobacteriia 976|Bacteroidetes K AraC-like ligand binding domain - - - - - - - - - - - - AraC_binding,Cupin_2,HTH_18 DYD3_k127_541115_1 700598.Niako_0963 6.332e-159 505.0 COG1600@1|root,COG1600@2|Bacteria,4NFCJ@976|Bacteroidetes,1IP9F@117747|Sphingobacteriia 976|Bacteroidetes C Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) queG - 1.17.99.6 ko:K18979 - - - - ko00000,ko01000,ko03016 - - - DUF1730,Fer4_16 DYD3_k127_541115_3 471854.Dfer_0021 1.834e-46 173.0 COG4430@1|root,COG4430@2|Bacteria,4NQJJ@976|Bacteroidetes,47QKU@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF1905) - - - - - - - - - - - - DUF1905,OmdA DYD3_k127_541115_4 1123278.KB893593_gene6038 1.529e-18 100.0 COG1874@1|root,COG1874@2|Bacteria,4NEFS@976|Bacteroidetes,47N7D@768503|Cytophagia 976|Bacteroidetes G pyrroloquinoline quinone binding - - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - CBM_6,Glyco_hydro_42 DYD3_k127_5416258_3 700598.Niako_6990 3.792e-152 484.0 COG0626@1|root,COG0626@2|Bacteria,4PKE6@976|Bacteroidetes,1INWU@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide metZ - - ko:K10764 ko00270,ko00920,ko01100,map00270,map00920,map01100 - R01288 RC00020,RC02848 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP DYD3_k127_5416258_4 700598.Niako_6989 4.18e-67 230.0 COG1765@1|root,COG1765@2|Bacteria,4NNTY@976|Bacteroidetes,1IT1R@117747|Sphingobacteriia 976|Bacteroidetes O redox protein regulator of disulfide bond formation - - - ko:K07397 - - - - ko00000 - - - OsmC DYD3_k127_5416258_1 700598.Niako_6988 4.787e-179 564.0 COG2021@1|root,COG2021@2|Bacteria,4NFG2@976|Bacteroidetes,1IQEA@117747|Sphingobacteriia 976|Bacteroidetes E Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine metXA - 2.3.1.31 ko:K00641 ko00270,ko01100,ko01130,map00270,map01100,map01130 - R01776 RC00004,RC00041 ko00000,ko00001,ko01000 - - - Abhydrolase_1 DYD3_k127_5416258_2 700598.Niako_6983 6.105e-175 562.0 COG0730@1|root,COG1648@1|root,COG0730@2|Bacteria,COG1648@2|Bacteria,4NI81@976|Bacteroidetes,1IQMJ@117747|Sphingobacteriia 976|Bacteroidetes H Sirohaem biosynthesis protein central cysG - 1.3.1.76,4.99.1.4 ko:K02304,ko:K07090 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02864,R03947 RC01012,RC01034 ko00000,ko00001,ko00002,ko01000 - - - NAD_binding_7,Sirohm_synth_M,TauE DYD3_k127_5416258_0 925409.KI911562_gene800 5.368e-193 610.0 COG0155@1|root,COG0155@2|Bacteria,4NENW@976|Bacteroidetes 976|Bacteroidetes C Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate cysI - 1.7.7.1,1.8.1.2 ko:K00366,ko:K00381 ko00910,ko00920,ko01100,ko01120,map00910,map00920,map01100,map01120 M00176,M00531 R00790,R00858 RC00065,RC00176 ko00000,ko00001,ko00002,ko01000 - - - NIR_SIR,NIR_SIR_ferr DYD3_k127_5425042_1 700598.Niako_0219 3.165e-111 363.0 COG0719@1|root,COG0719@2|Bacteria,4NFPG@976|Bacteroidetes,1IQF5@117747|Sphingobacteriia 976|Bacteroidetes O FeS assembly protein SufD sufD - - ko:K09015 - - - - ko00000 - - - UPF0051 DYD3_k127_5425042_0 929713.NIASO_07220 1.415e-193 610.0 COG0520@1|root,COG0520@2|Bacteria,4NDUB@976|Bacteroidetes,1IP7B@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine sufS - 2.8.1.7,4.4.1.16 ko:K11717 ko00450,ko01100,map00450,map01100 - R03599,R11528 RC00961,RC01789,RC02313 ko00000,ko00001,ko01000 - - - Aminotran_5 DYD3_k127_5425042_2 700598.Niako_0221 1.161e-68 236.0 COG2166@1|root,COG2166@2|Bacteria,4NM9N@976|Bacteroidetes,1ISKQ@117747|Sphingobacteriia 976|Bacteroidetes S Fe-S metabolism sufE - - ko:K02426 - - - - ko00000 - - - SufE DYD3_k127_5425042_5 925409.KI911562_gene2850 1.441e-50 180.0 COG2151@1|root,COG2151@2|Bacteria,4NSA9@976|Bacteroidetes,1ITW8@117747|Sphingobacteriia 976|Bacteroidetes S FeS assembly SUF system protein yitW - - - - - - - - - - - FeS_assembly_P DYD3_k127_5425042_3 925409.KI911562_gene2849 4.293e-68 234.0 COG1959@1|root,COG1959@2|Bacteria,4NY03@976|Bacteroidetes,1IXYJ@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - - - - - - - - - - Rrf2 DYD3_k127_5425042_4 1237149.C900_01714 6.234e-60 211.0 COG0454@1|root,COG0456@2|Bacteria,4NR4J@976|Bacteroidetes,47VCN@768503|Cytophagia 976|Bacteroidetes K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_7 DYD3_k127_5425042_6 1317122.ATO12_07795 4.464e-27 117.0 COG1846@1|root,COG1846@2|Bacteria,4NW3Q@976|Bacteroidetes,1I54G@117743|Flavobacteriia,2YKRN@290174|Aquimarina 976|Bacteroidetes K helix_turn_helix multiple antibiotic resistance protein - - - - - - - - - - - - MarR,MarR_2 DYD3_k127_5425042_7 485918.Cpin_3149 2.693e-25 117.0 COG0526@1|root,COG0526@2|Bacteria,4NTH5@976|Bacteroidetes,1ITDW@117747|Sphingobacteriia 976|Bacteroidetes O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - AhpC-TSA,Thioredoxin_8 DYD3_k127_5425376_2 760192.Halhy_1458 2.463e-46 186.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NJX0@976|Bacteroidetes,1J053@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_5425376_0 504472.Slin_1165 6.986e-83 291.0 COG0521@1|root,COG0521@2|Bacteria,4NHV5@976|Bacteroidetes,47MJ0@768503|Cytophagia 976|Bacteroidetes H Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like,SusD-like_2 DYD3_k127_5425376_1 1267534.KB906754_gene3465 2.486e-59 216.0 COG0491@1|root,COG0491@2|Bacteria,3Y54H@57723|Acidobacteria,2JM9F@204432|Acidobacteriia 204432|Acidobacteriia S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B DYD3_k127_5428030_4 925409.KI911562_gene1881 6.079e-65 226.0 29AZZ@1|root,2ZXYX@2|Bacteria,4NP6M@976|Bacteroidetes,1ITA8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5428030_6 700598.Niako_0197 2.768e-44 167.0 28K7H@1|root,330T5@2|Bacteria,4NVUN@976|Bacteroidetes,1IU47@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Methylamine utilisation protein MauE - - - - - - - - - - - - DoxX,DoxX_3,MauE DYD3_k127_5428030_2 700598.Niako_0199 1.616e-124 413.0 COG1834@1|root,COG1834@2|Bacteria,4NE18@976|Bacteroidetes,1IPR8@117747|Sphingobacteriia 976|Bacteroidetes E PFAM SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_5428030_0 700598.Niako_0200 1.268e-280 901.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IP0D@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_5428030_5 1122605.KB893649_gene3732 1.066e-54 207.0 COG3712@1|root,COG3712@2|Bacteria,4NE6N@976|Bacteroidetes 976|Bacteroidetes PT COG3712 Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_5428030_7 700598.Niako_3666 1.003e-37 148.0 COG1595@1|root,COG1595@2|Bacteria,4NV4N@976|Bacteroidetes,1IYRF@117747|Sphingobacteriia 976|Bacteroidetes K COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_5428030_1 1267211.KI669560_gene2082 2.291e-176 558.0 COG0823@1|root,COG0823@2|Bacteria 2|Bacteria U Involved in the tonB-independent uptake of proteins tolB - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PA,PD40,PDZ_2,Peptidase_M28 DYD3_k127_5428030_3 700598.Niako_0343 6.575e-81 276.0 COG0457@1|root,COG0457@2|Bacteria 700598.Niako_0343|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD3_k127_5432291_0 925409.KI911562_gene1470 8.496e-301 930.0 COG3158@1|root,COG3158@2|Bacteria,4NET9@976|Bacteroidetes,1IP14@117747|Sphingobacteriia 976|Bacteroidetes P Transport of potassium into the cell kup - - ko:K03549 - - - - ko00000,ko02000 2.A.72 - - K_trans DYD3_k127_5432291_1 700598.Niako_4135 1.289e-06 53.0 COG2204@1|root,COG2204@2|Bacteria,4NE89@976|Bacteroidetes,1IQ1A@117747|Sphingobacteriia 976|Bacteroidetes T COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - ko:K02481 - - - - ko00000,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD3_k127_5434173_2 1122605.KB893626_gene2714 5.118e-25 104.0 COG0442@1|root,COG0442@2|Bacteria,4NEAF@976|Bacteroidetes,1IQ4M@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) proS GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 ko:K01881 ko00970,map00970 M00359,M00360 R03661 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,ProRS-C_1,tRNA-synt_2b DYD3_k127_5434173_3 880526.KE386488_gene1230 2.196e-19 91.0 2A9MT@1|root,30YUH@2|Bacteria,4PCSQ@976|Bacteroidetes,2FVP4@200643|Bacteroidia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5434173_4 485917.Phep_0231 1.063e-12 71.0 2E372@1|root,32Y6U@2|Bacteria,4NUUI@976|Bacteroidetes,1IU59@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2752) - - - - - - - - - - - - DUF2752 DYD3_k127_5434173_5 700598.Niako_2001 7.353e-08 62.0 2E6Q3@1|root,331AC@2|Bacteria,4NUP2@976|Bacteroidetes,1IU1U@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - DUF5362 DYD3_k127_5434173_6 755732.Fluta_3421 4.916e-07 57.0 2E6Q3@1|root,331AC@2|Bacteria,4NUP2@976|Bacteroidetes,1IMY9@117743|Flavobacteriia,2PB9C@246874|Cryomorphaceae 976|Bacteroidetes - - - - - - - - - - - - - - DUF5362 DYD3_k127_5434173_0 700598.Niako_2002 4.89e-115 375.0 COG1714@1|root,COG1714@2|Bacteria,4NH7U@976|Bacteroidetes,1IRZA@117747|Sphingobacteriia 976|Bacteroidetes S pfam rdd - - - - - - - - - - - - RDD DYD3_k127_5434173_1 700598.Niako_2003 5.589e-45 164.0 COG1300@1|root,COG1300@2|Bacteria,4NG8D@976|Bacteroidetes,1IQH7@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Integral membrane protein DUF95 - - - - - - - - - - - - SpoIIM DYD3_k127_5437103_2 1123277.KB893207_gene408 8.22e-25 109.0 2DP3S@1|root,330E4@2|Bacteria,4NWQT@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function (DUF3592) - - - - - - - - - - - - DUF3592 DYD3_k127_5437103_1 1078020.KEK_13493 1.348e-41 158.0 2DN2T@1|root,32V7H@2|Bacteria 2|Bacteria S NIPSNAP - - - - - - - - - - - - NIPSNAP DYD3_k127_5437103_0 1121481.AUAS01000017_gene2502 1.882e-136 463.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47KTF@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5442026_2 700598.Niako_5585 4.747e-162 519.0 COG5267@1|root,COG5267@2|Bacteria,4NHSB@976|Bacteroidetes,1IQIN@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1800) - - - - - - - - - - - - DUF1800 DYD3_k127_5442026_0 700598.Niako_5584 7.093e-252 786.0 COG4102@1|root,COG4102@2|Bacteria,4NFFC@976|Bacteroidetes,1IPWT@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD3_k127_5442026_3 700598.Niako_5583 2.306e-107 350.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - - - - - - - - - - GerE,Response_reg DYD3_k127_5442026_1 700598.Niako_5581 1.251e-230 727.0 COG0457@1|root,COG0642@1|root,COG0457@2|Bacteria,COG2205@2|Bacteria,4NQHU@976|Bacteroidetes 976|Bacteroidetes T Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,TPR_12,TPR_8 DYD3_k127_5442515_0 700598.Niako_2624 0.0 1007.0 COG2303@1|root,COG2303@2|Bacteria,4NEHP@976|Bacteroidetes 976|Bacteroidetes E Oxidoreductase - - - - - - - - - - - - FAD_binding_2,GMC_oxred_C,GMC_oxred_N DYD3_k127_5442515_2 700598.Niako_2625 1.008e-83 283.0 2CISN@1|root,2Z7MB@2|Bacteria,4NFJX@976|Bacteroidetes,1ISGE@117747|Sphingobacteriia 976|Bacteroidetes S Gluconate 2-dehydrogenase subunit 3 - - - - - - - - - - - - Gluconate_2-dh3 DYD3_k127_5442515_1 700598.Niako_2626 1.248e-163 527.0 COG2202@1|root,COG3829@1|root,COG4251@1|root,COG2202@2|Bacteria,COG3829@2|Bacteria,COG4251@2|Bacteria,4NE3J@976|Bacteroidetes,1IWJQ@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,PAS_4,PAS_9 DYD3_k127_5445877_1 760192.Halhy_5849 4.294e-98 340.0 COG0457@1|root,COG4585@1|root,COG0457@2|Bacteria,COG4585@2|Bacteria,4NI65@976|Bacteroidetes,1IRZC@117747|Sphingobacteriia 976|Bacteroidetes T Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_12,TPR_8 DYD3_k127_5445877_3 760192.Halhy_5850 8.132e-63 222.0 COG2197@1|root,COG2197@2|Bacteria,4NNRN@976|Bacteroidetes 976|Bacteroidetes K COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_5445877_2 700598.Niako_5589 1.363e-94 315.0 COG1385@1|root,COG1385@2|Bacteria,4NE2S@976|Bacteroidetes,1INQF@117747|Sphingobacteriia 976|Bacteroidetes J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit rsmE - 2.1.1.193 ko:K09761 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_RNA DYD3_k127_5445877_0 700598.Niako_5590 5.621e-162 513.0 COG0305@1|root,COG0305@2|Bacteria,4NF8P@976|Bacteroidetes,1IPIQ@117747|Sphingobacteriia 976|Bacteroidetes L Participates in initiation and elongation during chromosome replication dnaB - 3.6.4.12 ko:K02314 ko03030,ko04112,map03030,map04112 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB,DnaB_C DYD3_k127_5447636_1 761193.Runsl_0392 1.049e-73 252.0 2C57D@1|root,2Z7RS@2|Bacteria,4NEKN@976|Bacteroidetes,47KGH@768503|Cytophagia 976|Bacteroidetes S Protein of unknown function (DUF2891) - - - - - - - - - - - - DUF2891 DYD3_k127_5447636_0 760192.Halhy_1192 1.903e-193 615.0 COG3975@1|root,COG3975@2|Bacteria,4NGTY@976|Bacteroidetes,1INM3@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase M61 - - - - - - - - - - - - PDZ_2,Peptidase_M61 DYD3_k127_5473106_1 700598.Niako_5630 7.44e-60 208.0 COG0597@1|root,COG0597@2|Bacteria,4NEZN@976|Bacteroidetes,1IQPW@117747|Sphingobacteriia 976|Bacteroidetes MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins lspA - 3.4.23.36 ko:K03101 ko03060,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_A8 DYD3_k127_5473106_0 700598.Niako_5631 0.0 1253.0 COG0770@1|root,COG0787@1|root,COG0770@2|Bacteria,COG0787@2|Bacteria,4NEXM@976|Bacteroidetes,1IP9R@117747|Sphingobacteriia 976|Bacteroidetes M Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids alr - 5.1.1.1,6.3.2.10 ko:K01775,ko:K01929 ko00300,ko00473,ko00550,ko01100,ko01502,map00300,map00473,map00550,map01100,map01502 - R00401,R04573,R04617 RC00064,RC00141,RC00285 ko00000,ko00001,ko01000,ko01011 - - - Ala_racemase_C,Ala_racemase_N,Mur_ligase,Mur_ligase_M DYD3_k127_5473106_2 700598.Niako_5632 1.92e-59 210.0 COG0861@1|root,COG0861@2|Bacteria,4NH7P@976|Bacteroidetes,1IQW6@117747|Sphingobacteriia 976|Bacteroidetes P Integral membrane protein TerC - - - ko:K05794 - - - - ko00000 - - - TerC DYD3_k127_5475730_0 700598.Niako_5730 0.0 1009.0 COG0013@1|root,COG0013@2|Bacteria,4NFHW@976|Bacteroidetes,1INPU@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD DYD3_k127_5475730_2 700598.Niako_5731 2.292e-87 299.0 COG2234@1|root,COG2234@2|Bacteria,4NEHY@976|Bacteroidetes,1IP78@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase, M28 - - - - - - - - - - - - Peptidase_M28 DYD3_k127_5475730_1 700598.Niako_5732 1.264e-90 308.0 COG0265@1|root,COG0265@2|Bacteria 2|Bacteria O serine-type endopeptidase activity - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 DYD3_k127_547624_1 700598.Niako_4593 9.306e-46 176.0 COG1196@1|root,COG1196@2|Bacteria 2|Bacteria D nuclear chromosome segregation - - - ko:K18376 - M00660 - - ko00000,ko00002,ko02044 1.C.65.1 - - DUF1542,Relaxase,YSIRK_signal DYD3_k127_547624_0 1121904.ARBP01000005_gene4607 2.302e-128 418.0 COG3386@1|root,COG3386@2|Bacteria,4NIMX@976|Bacteroidetes,47KMQ@768503|Cytophagia 976|Bacteroidetes G PFAM SMP-30 Gluconolaconase - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL DYD3_k127_547624_2 700598.Niako_3480 2.355e-17 84.0 2DTQW@1|root,33MB8@2|Bacteria,4P99T@976|Bacteroidetes,1J00K@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5478517_4 700598.Niako_1018 1.338e-29 125.0 COG0545@1|root,COG0545@2|Bacteria 2|Bacteria O Peptidyl-prolyl cis-trans isomerase - - 5.2.1.8 ko:K03772 - - - - ko00000,ko01000,ko03110 - - - FKBP_C DYD3_k127_5478517_0 700598.Niako_1020 3.607e-245 763.0 COG1760@1|root,COG1760@2|Bacteria,4NENR@976|Bacteroidetes,1IQ2K@117747|Sphingobacteriia 976|Bacteroidetes E Serine dehydratase sdaA - 4.3.1.17 ko:K01752 ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230 - R00220,R00590 RC00331,RC02600 ko00000,ko00001,ko01000 - - - SDH_alpha,SDH_beta DYD3_k127_5478517_1 926549.KI421517_gene2412 1.911e-229 724.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5483650_4 700598.Niako_6049 2.955e-22 95.0 COG0136@1|root,COG0136@2|Bacteria,4NE4V@976|Bacteroidetes,1IQCT@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate asd - 1.2.1.11 ko:K00133 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R02291 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC DYD3_k127_5483650_1 700598.Niako_6048 2.67e-114 371.0 COG5587@1|root,COG5587@2|Bacteria,4NNS3@976|Bacteroidetes,1ISUQ@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM TIGR02453 family protein - - - - - - - - - - - - DUF2461 DYD3_k127_5483650_2 700598.Niako_6047 1.904e-109 355.0 2AFQQ@1|root,315SK@2|Bacteria,4NJD4@976|Bacteroidetes,1IZCK@117747|Sphingobacteriia 976|Bacteroidetes S NUMOD4 motif - - - - - - - - - - - - HNH_3,NUMOD4 DYD3_k127_5483650_0 700598.Niako_6046 0.0 1071.0 COG0272@1|root,COG0272@2|Bacteria,4NE2X@976|Bacteroidetes,1IQAI@117747|Sphingobacteriia 976|Bacteroidetes L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA - 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 DYD3_k127_5483650_3 929703.KE386491_gene1820 3.699e-36 143.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes,47Y7H@768503|Cytophagia 976|Bacteroidetes H TonB-dependent Receptor Plug - - - ko:K21573 - - - - ko00000,ko02000 1.B.14.6.1 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_5483677_0 697281.Mahau_1803 8.002e-111 389.0 COG3934@1|root,COG5520@1|root,COG3934@2|Bacteria,COG5520@2|Bacteria,1TS99@1239|Firmicutes,249YD@186801|Clostridia,42HSQ@68295|Thermoanaerobacterales 186801|Clostridia G Belongs to the glycosyl hydrolase 30 family - - 3.2.1.136,3.2.1.45 ko:K01201,ko:K15924 ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142 - R01498 RC00059,RC00451 ko00000,ko00001,ko01000 - GH30,GH5 - Dockerin_1,Glyco_hydr_30_2,Glyco_hydro_30,Glyco_hydro_30C DYD3_k127_5483677_1 1123248.KB893325_gene1168 8.291e-83 283.0 COG2010@1|root,COG2010@2|Bacteria,4NMGT@976|Bacteroidetes,1J0CK@117747|Sphingobacteriia 976|Bacteroidetes C Cytochrome c - - - - - - - - - - - - Cytochrom_C DYD3_k127_5485709_1 401053.AciPR4_1572 8.034e-120 397.0 COG3119@1|root,COG3119@2|Bacteria,3Y32F@57723|Acidobacteria,2JIJB@204432|Acidobacteriia 204432|Acidobacteriia P Sulfatase - - - - - - - - - - - - DUF4976,Sulfatase DYD3_k127_5485709_0 926549.KI421517_gene2965 4.377e-172 552.0 COG3419@1|root,COG3419@2|Bacteria,4NGV9@976|Bacteroidetes,47MMR@768503|Cytophagia 976|Bacteroidetes NU Tfp pilus assembly protein tip-associated adhesin - - - - - - - - - - - - PQQ,PQQ_2 DYD3_k127_5485709_2 1150600.ADIARSV_1365 3.453e-05 46.0 COG2771@1|root,COG3292@1|root,COG2771@2|Bacteria,COG3292@2|Bacteria,4PMP6@976|Bacteroidetes,1IPII@117747|Sphingobacteriia 976|Bacteroidetes KT PFAM Y_Y_Y domain - - - - - - - - - - - - GerE,Y_Y_Y DYD3_k127_5497880_3 700598.Niako_6071 1.41e-26 108.0 COG2265@1|root,COG2265@2|Bacteria,4NFP1@976|Bacteroidetes,1IQPD@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family rumA - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr DYD3_k127_5497880_2 925409.KI911562_gene624 3.134e-75 259.0 COG0705@1|root,COG0705@2|Bacteria,4NIYR@976|Bacteroidetes,1IS1R@117747|Sphingobacteriia 976|Bacteroidetes S Rhomboid family - - 3.4.21.105 ko:K09650 - - - - ko00000,ko01000,ko01002,ko03029 - - - Rhomboid DYD3_k127_5497880_0 700598.Niako_6069 1.325e-128 417.0 COG0705@1|root,COG0705@2|Bacteria,4NGVJ@976|Bacteroidetes,1IS2B@117747|Sphingobacteriia 976|Bacteroidetes S Rhomboid family - - - - - - - - - - - - Rhomboid DYD3_k127_5497880_1 700598.Niako_6068 4.856e-77 263.0 COG3568@1|root,COG3568@2|Bacteria,4NGUV@976|Bacteroidetes,1IPS5@117747|Sphingobacteriia 976|Bacteroidetes S endonuclease exonuclease phosphatase - - - - - - - - - - - - Exo_endo_phos DYD3_k127_5500169_4 1123248.KB893321_gene505 3.361e-82 276.0 COG0589@1|root,COG1914@1|root,COG0589@2|Bacteria,COG1914@2|Bacteria,4NENE@976|Bacteroidetes,1IQIP@117747|Sphingobacteriia 976|Bacteroidetes P H( )-stimulated, divalent metal cation uptake system mntH - - ko:K03322 - - - - ko00000,ko02000 2.A.55.2.6,2.A.55.3 - - Nramp,Usp DYD3_k127_5500169_1 700598.Niako_4366 2.405e-119 386.0 COG1321@1|root,COG1321@2|Bacteria,4NGUP@976|Bacteroidetes,1IS2N@117747|Sphingobacteriia 976|Bacteroidetes K Iron dependent repressor, metal binding and dimerisation domain - - - ko:K03709 - - - - ko00000,ko03000 - - - Fe_dep_repr_C,Fe_dep_repress,FeoA DYD3_k127_5500169_2 700598.Niako_4365 2.374e-111 368.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - 2.4.1.12 ko:K00694,ko:K11936,ko:K20541 ko00500,ko01100,ko02026,map00500,map01100,map02026 - R02889 RC00005 ko00000,ko00001,ko01000,ko01003,ko02000 4.D.1.1.2,4.D.1.1.3,4.D.3.1.2,4.D.3.1.5,4.D.3.1.6 GT2 - BcsB,Glycos_transf_2 DYD3_k127_5500169_0 700598.Niako_4364 0.0 1006.0 COG0058@1|root,COG0058@2|Bacteria,4NGR1@976|Bacteroidetes,1IPKK@117747|Sphingobacteriia 976|Bacteroidetes G COGs COG0058 Glucan phosphorylase glgP - 2.4.1.1,2.4.1.8 ko:K00688,ko:K00691 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R01555,R02111 RC00049 ko00000,ko00001,ko01000 - GH65,GT35 - DUF3417,Phosphorylase DYD3_k127_5500169_3 700598.Niako_4363 1.424e-103 346.0 COG5316@1|root,COG5316@2|Bacteria,4NGER@976|Bacteroidetes,1IP6U@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4139) - - - - - - - - - - - - DUF4139,DUF4140,Plug DYD3_k127_550498_1 700598.Niako_6465 4.868e-177 564.0 COG1680@1|root,COG1680@2|Bacteria,4NGZR@976|Bacteroidetes,1ISPB@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase DYD3_k127_550498_3 700598.Niako_6466 6.543e-85 289.0 2E602@1|root,330PE@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_550498_2 700598.Niako_6467 9.036e-87 296.0 COG0299@1|root,COG0299@2|Bacteria,4NNZP@976|Bacteroidetes,1IQHJ@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate purN - 2.1.2.2 ko:K11175 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - Formyl_trans_N DYD3_k127_550498_0 700598.Niako_6468 4.422e-180 573.0 COG3474@1|root,COG3474@2|Bacteria,4PKQA@976|Bacteroidetes,1J0U0@117747|Sphingobacteriia 976|Bacteroidetes C Class III cytochrome C family - - - - - - - - - - - - Cytochrom_C,Cytochrom_CIII,Cytochrome_C7 DYD3_k127_550498_4 700598.Niako_6469 3.794e-33 129.0 COG0243@1|root,COG0437@1|root,COG0243@2|Bacteria,COG0437@2|Bacteria,4NE5M@976|Bacteroidetes,1IPWZ@117747|Sphingobacteriia 976|Bacteroidetes C Oxidoreductase nrfC - - ko:K00184 - - - - ko00000 5.A.3 - - Fer4_7,Molydop_binding DYD3_k127_5505760_4 1441629.PCH70_30700 6.238e-08 55.0 COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,1RMFF@1236|Gammaproteobacteria,1Z6U6@136849|Pseudomonas syringae group 1236|Gammaproteobacteria C COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes lpdG GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - iE2348C_1286.E2348C_4372,iJN746.PP_4187 Pyr_redox_2,Pyr_redox_dim DYD3_k127_5505760_0 700598.Niako_6914 2.144e-147 481.0 COG3209@1|root,COG4447@1|root,COG3209@2|Bacteria,COG4447@2|Bacteria 2|Bacteria S cellulose binding - - - - - - - - - - - - SLH DYD3_k127_5505760_1 700598.Niako_6913 1.344e-46 169.0 COG1846@1|root,COG1846@2|Bacteria,4PKFS@976|Bacteroidetes,1IZ1N@117747|Sphingobacteriia 976|Bacteroidetes K Winged helix DNA-binding domain marR - - - - - - - - - - - HTH_34 DYD3_k127_5505760_3 1237149.C900_03337 3.437e-15 83.0 295IV@1|root,2ZSWC@2|Bacteria,4NVMA@976|Bacteroidetes,47W1I@768503|Cytophagia 976|Bacteroidetes S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - DYD3_k127_5505760_2 700598.Niako_6912 3.948e-18 85.0 295IV@1|root,2ZSWC@2|Bacteria,4NVMA@976|Bacteroidetes,1IZ1W@117747|Sphingobacteriia 976|Bacteroidetes S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - DYD3_k127_5507163_0 1123057.P872_07120 6.653e-253 799.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes,47K1M@768503|Cytophagia 976|Bacteroidetes H TonB-dependent Receptor Plug Domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_5507163_2 649349.Lbys_2115 6.62e-112 377.0 COG2913@1|root,COG2913@2|Bacteria,4PM6E@976|Bacteroidetes,47YEH@768503|Cytophagia 976|Bacteroidetes J Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_5507163_3 700598.Niako_2267 1.859e-46 174.0 2DSNU@1|root,33GV1@2|Bacteria 2|Bacteria S Domain of unknown function (DUF4136) - - - - - - - - - - - - DUF4136 DYD3_k127_5507163_1 700598.Niako_5264 1.764e-181 585.0 COG2885@1|root,COG2885@2|Bacteria,4NE8J@976|Bacteroidetes,1IPSE@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the ompA family - - - - - - - - - - - - OmpA,TSP_3 DYD3_k127_5520072_2 991.IW20_18080 2.028e-104 349.0 COG2207@1|root,COG2207@2|Bacteria,4NIRD@976|Bacteroidetes,1I0T7@117743|Flavobacteriia,2NT9X@237|Flavobacterium 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_5520072_0 760192.Halhy_2088 1.603e-203 645.0 COG2133@1|root,COG2133@2|Bacteria,4NEZC@976|Bacteroidetes,1IPYV@117747|Sphingobacteriia 976|Bacteroidetes G Glucose / Sorbosone dehydrogenase - - - ko:K21430 - - - - ko00000,ko01000 - - - Cytochrome_CBB3,GSDH,Lumazine_bd_2 DYD3_k127_5520072_1 485918.Cpin_2392 5.726e-118 384.0 COG2982@1|root,COG2982@2|Bacteria,4NHD3@976|Bacteroidetes 976|Bacteroidetes M AsmA family - - - - - - - - - - - - AsmA,AsmA_2,DUF3971 DYD3_k127_5520479_2 1313421.JHBV01000043_gene3105 1.865e-12 70.0 2B31B@1|root,31VNR@2|Bacteria,4NS4U@976|Bacteroidetes,1ITM6@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5520479_0 1150600.ADIARSV_1668 1.026e-102 340.0 COG3023@1|root,COG3023@2|Bacteria,4NE38@976|Bacteroidetes,1IURP@117747|Sphingobacteriia 976|Bacteroidetes V Ami_2 - - - - - - - - - - - - Amidase_2,SH3_3 DYD3_k127_5520479_1 865937.Gilli_1034 1.358e-36 142.0 COG3621@1|root,COG3621@2|Bacteria,4NG71@976|Bacteroidetes,1HY7V@117743|Flavobacteriia 976|Bacteroidetes S COG3621 Patatin - - - ko:K06900 - - - - ko00000 - - - Patatin DYD3_k127_5529324_0 700598.Niako_7332 0.0 1365.0 COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,4NF9D@976|Bacteroidetes,1IPN0@117747|Sphingobacteriia 976|Bacteroidetes I 3-hydroxyacyl-CoA dehydrogenase fadN - 1.1.1.35 ko:K07516 ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212 M00087 R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000 - - - 3HCDH,3HCDH_N,ECH_1 DYD3_k127_5529324_1 700598.Niako_7333 1.853e-163 526.0 COG2379@1|root,COG2379@2|Bacteria,4NI08@976|Bacteroidetes,1IVP0@117747|Sphingobacteriia 976|Bacteroidetes H Hydroxypyruvate reductase - - 2.7.1.165 ko:K11529 ko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01120,map01130,map01200 M00346 R08572 RC00002,RC00428 ko00000,ko00001,ko00002,ko01000 - - - DUF4147,MOFRL DYD3_k127_5529324_2 700598.Niako_7334 1.751e-103 343.0 COG2084@1|root,COG2084@2|Bacteria,4NEF7@976|Bacteroidetes,1IS6B@117747|Sphingobacteriia 976|Bacteroidetes I PFAM 6-phosphogluconate dehydrogenase NAD-binding - - 1.1.1.60 ko:K00042 ko00630,ko01100,map00630,map01100 - R01745,R01747 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 DYD3_k127_5529324_3 700598.Niako_7335 5.091e-58 204.0 COG0073@1|root,COG0143@1|root,COG0073@2|Bacteria,COG0143@2|Bacteria,4NECB@976|Bacteroidetes,1IPA1@117747|Sphingobacteriia 976|Bacteroidetes J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation metG GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 ko:K01874 ko00450,ko00970,map00450,map00970 M00359,M00360 R03659,R04773 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1g,tRNA_bind DYD3_k127_55298_2 700598.Niako_5039 1.252e-44 164.0 COG2866@1|root,COG2866@2|Bacteria,4NF5T@976|Bacteroidetes,1IQ41@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase M14, carboxypeptidase A - - - - - - - - - - - - Peptidase_M14 DYD3_k127_55298_1 1121904.ARBP01000007_gene2886 5.307e-122 412.0 COG0793@1|root,COG0793@2|Bacteria,4NEK8@976|Bacteroidetes,47MAF@768503|Cytophagia 976|Bacteroidetes M Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_55298_3 700598.Niako_5040 1.784e-33 131.0 COG0268@1|root,COG0268@2|Bacteria,4NSB1@976|Bacteroidetes,1ITAU@117747|Sphingobacteriia 976|Bacteroidetes J Binds directly to 16S ribosomal RNA rpsT - - ko:K02968 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S20p DYD3_k127_55298_0 700598.Niako_5041 2.491e-268 831.0 COG0567@1|root,COG0567@2|Bacteria,4NEU9@976|Bacteroidetes,1IQYB@117747|Sphingobacteriia 976|Bacteroidetes C 2-oxoglutarate dehydrogenase, E1 sucA - 1.2.4.2 ko:K00164 ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R00621,R01933,R01940,R03316,R08549 RC00004,RC00027,RC00627,RC02743,RC02833,RC02883 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr DYD3_k127_5529933_3 714943.Mucpa_4139 7.732e-25 105.0 COG3967@1|root,COG3967@2|Bacteria,4NJDN@976|Bacteroidetes,1IS2M@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the short-chain dehydrogenases reductases (SDR) family - - - ko:K14189 - - - - ko00000,ko01000 - - - adh_short DYD3_k127_5529933_1 1038866.KB902769_gene1597 7.024e-57 201.0 COG1764@1|root,COG1764@2|Bacteria,1RD92@1224|Proteobacteria,2U7X2@28211|Alphaproteobacteria,3JYD6@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria O OsmC-like protein ohr - - - - - - - - - - - OsmC DYD3_k127_5529933_0 485918.Cpin_5383 2.514e-61 219.0 COG3279@1|root,COG3279@2|Bacteria,4NNA4@976|Bacteroidetes,1IV2F@117747|Sphingobacteriia 976|Bacteroidetes K LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_5529933_2 471854.Dfer_5361 1.262e-52 195.0 COG2972@1|root,COG2972@2|Bacteria,4NH1Q@976|Bacteroidetes,47ME5@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_5530679_0 700598.Niako_1228 2.263e-115 382.0 COG3712@1|root,COG3712@2|Bacteria,4NH3M@976|Bacteroidetes,1ISNP@117747|Sphingobacteriia 976|Bacteroidetes PT COG3712 Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_5530679_1 700598.Niako_1229 3.808e-70 244.0 COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,4NDXS@976|Bacteroidetes,1IPK4@117747|Sphingobacteriia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_5531656_1 700598.Niako_1158 7.342e-105 346.0 COG0642@1|root,COG2205@2|Bacteria,4NK0U@976|Bacteroidetes,1IQHZ@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,HisKA_7TM,SBP_bac_3 DYD3_k127_5531656_2 1123248.KB893370_gene5008 5.801e-96 321.0 COG0412@1|root,COG0412@2|Bacteria,4NKMA@976|Bacteroidetes,1IQ0X@117747|Sphingobacteriia 976|Bacteroidetes Q dienelactone hydrolase - - - - - - - - - - - - DLH DYD3_k127_5531656_3 700598.Niako_1160 3.69e-88 299.0 COG0500@1|root,COG2226@2|Bacteria,4NHAE@976|Bacteroidetes 976|Bacteroidetes Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11 DYD3_k127_5531656_0 700598.Niako_1161 2.319e-202 632.0 COG1186@1|root,COG1186@2|Bacteria,4NEN1@976|Bacteroidetes,1IP7G@117747|Sphingobacteriia 976|Bacteroidetes J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA prfB - - ko:K02836 - - - - ko00000,ko03012 - - - PCRF,RF-1 DYD3_k127_5537348_1 700598.Niako_5119 5.019e-42 156.0 COG1538@1|root,COG1538@2|Bacteria,4NDZK@976|Bacteroidetes,1IPBS@117747|Sphingobacteriia 976|Bacteroidetes MU RND efflux system, outer membrane lipoprotein, NodT - - - - - - - - - - - - OEP DYD3_k127_5537348_0 700598.Niako_5120 0.0 1030.0 COG0326@1|root,COG0326@2|Bacteria,4NDXZ@976|Bacteroidetes,1IP5W@117747|Sphingobacteriia 976|Bacteroidetes O Heat shock protein Hsp90 htpG - - ko:K04079 ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418 - - - ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147 - - - HATPase_c_3,HSP90 DYD3_k127_553903_2 700598.Niako_0115 1.046e-42 157.0 COG0083@1|root,COG0083@2|Bacteria,4NE2M@976|Bacteroidetes,1IP1D@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate thrB - 2.7.1.39 ko:K00872 ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230 M00018 R01771 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD3_k127_553903_0 700598.Niako_0116 6.622e-205 645.0 COG0498@1|root,COG0498@2|Bacteria,4NEAA@976|Bacteroidetes,1IPDH@117747|Sphingobacteriia 976|Bacteroidetes E Threonine synthase thrC - 4.2.3.1 ko:K01733 ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230 M00018 R01466,R05086 RC00017,RC00526 ko00000,ko00001,ko00002,ko01000 - - - PALP,Thr_synth_N DYD3_k127_553903_1 485918.Cpin_3256 2.933e-102 340.0 COG4714@1|root,COG4714@2|Bacteria,4NEVY@976|Bacteroidetes,1IVI4@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2167) - - - - - - - - - - - - DUF2167 DYD3_k127_5547137_7 700598.Niako_1526 6.756e-79 264.0 COG0297@1|root,COG0297@2|Bacteria,4NFP8@976|Bacteroidetes,1IPR7@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Starch synthase, catalytic domain glgA - 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5 DYD3_k127_5547137_10 1267211.KI669560_gene1414 5.751e-62 231.0 2A79D@1|root,30W5Z@2|Bacteria,4NN88@976|Bacteroidetes,1IRXG@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4270) - - - - - - - - - - - - DUF4270 DYD3_k127_5547137_1 700598.Niako_1527 1.469e-244 758.0 COG0192@1|root,COG0192@2|Bacteria,4NG7Y@976|Bacteroidetes,1INXM@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme metK GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 ko:K00789 ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230 M00034,M00035,M00368,M00609 R00177,R04771 RC00021,RC01211 ko00000,ko00001,ko00002,ko01000 - - - S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N DYD3_k127_5547137_8 929556.Solca_3753 3.427e-70 245.0 COG0494@1|root,COG0494@2|Bacteria,4NMHV@976|Bacteroidetes,1ISBJ@117747|Sphingobacteriia 976|Bacteroidetes L NUDIX domain nudF - - - - - - - - - - - NUDIX DYD3_k127_5547137_3 700598.Niako_1530 2.092e-129 416.0 COG0566@1|root,COG0566@2|Bacteria,4NF6H@976|Bacteroidetes,1IRFD@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family trmH - 2.1.1.185 ko:K03218,ko:K03437 - - - - ko00000,ko01000,ko03009,ko03016 - - - SpoU_methylase,SpoU_sub_bind DYD3_k127_5547137_12 926556.Echvi_3855 1.851e-44 166.0 COG0119@1|root,COG0119@2|Bacteria,4NDZH@976|Bacteroidetes,47KB5@768503|Cytophagia 976|Bacteroidetes E Isopropylmalate homocitrate citramalate synthase mvaB - 4.1.3.4 ko:K01640 ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146 M00036,M00088 R01360,R08090 RC00502,RC00503,RC01118,RC01946 ko00000,ko00001,ko00002,ko01000 - - - HMGL-like DYD3_k127_5547137_11 700598.Niako_1532 1.108e-58 209.0 COG0119@1|root,COG0119@2|Bacteria,4NDZH@976|Bacteroidetes,1IQRT@117747|Sphingobacteriia 976|Bacteroidetes E Hydroxymethylglutaryl-CoA lyase mvaB - 4.1.3.4 ko:K01640 ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146 M00036,M00088 R01360,R08090 RC00502,RC00503,RC01118,RC01946 ko00000,ko00001,ko00002,ko01000 - - - HMGL-like DYD3_k127_5547137_2 700598.Niako_1533 4.177e-157 500.0 COG2755@1|root,COG2755@2|Bacteria,4NFN6@976|Bacteroidetes,1IXEE@117747|Sphingobacteriia 976|Bacteroidetes E GSCFA family - - - - - - - - - - - - GSCFA DYD3_k127_5547137_9 1122605.KB893625_gene2129 2.053e-66 239.0 COG2334@1|root,COG2334@2|Bacteria,4NH00@976|Bacteroidetes,1INVB@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Aminoglycoside phosphotransferase mdsC - - - - - - - - - - - APH DYD3_k127_5547137_0 700598.Niako_1534 6.478e-246 764.0 COG0673@1|root,COG0673@2|Bacteria,4NF3G@976|Bacteroidetes,1IPU8@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_5547137_6 700598.Niako_1535 1.48e-100 333.0 28K10@1|root,2Z9QW@2|Bacteria,4NF8J@976|Bacteroidetes,1ISKT@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4918) - - - - - - - - - - - - DUF4918 DYD3_k127_5547137_5 1123248.KB893318_gene4190 1.399e-105 346.0 COG4445@1|root,COG4445@2|Bacteria,4NFY4@976|Bacteroidetes,1ISGF@117747|Sphingobacteriia 976|Bacteroidetes FJ COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA miaE - - ko:K06169 - - - - ko00000,ko01000,ko03016 - - - MiaE DYD3_k127_5547137_4 700598.Niako_1537 2.605e-115 376.0 COG0156@1|root,COG0156@2|Bacteria,4NEXI@976|Bacteroidetes,1IRHF@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Aminotransferase class I and II bioF - 2.3.1.29,2.3.1.47 ko:K00639,ko:K00652 ko00260,ko00780,ko01100,map00260,map00780,map01100 M00123,M00573,M00577 R00371,R03210,R10124 RC00004,RC00039,RC00394,RC02725 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_5549211_2 485918.Cpin_6776 7.242e-131 422.0 COG3828@1|root,COG3828@2|Bacteria,4NI7K@976|Bacteroidetes,1IV97@117747|Sphingobacteriia 976|Bacteroidetes G Trehalose utilisation - - - - - - - - - - - - ThuA DYD3_k127_5549211_1 509635.N824_26450 3.374e-136 452.0 COG1680@1|root,COG1680@2|Bacteria,4NEEP@976|Bacteroidetes,1IXHS@117747|Sphingobacteriia 976|Bacteroidetes V COG1680 Beta-lactamase class C and other penicillin binding - - - - - - - - - - - - Beta-lactamase DYD3_k127_5549211_0 468059.AUHA01000003_gene1520 1.485e-136 440.0 COG3119@1|root,COG3119@2|Bacteria,4NEPB@976|Bacteroidetes,1IPI2@117747|Sphingobacteriia 976|Bacteroidetes P PFAM sulfatase - - - - - - - - - - - - Sulfatase DYD3_k127_5550005_1 929713.NIASO_07155 1.107e-75 258.0 COG0274@1|root,COG0274@2|Bacteria,4NGE3@976|Bacteroidetes,1IXCK@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate deoC GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 ko:K01619 ko00030,map00030 - R01066 RC00436,RC00437 ko00000,ko00001,ko01000 - - - DeoC DYD3_k127_5550005_3 700598.Niako_0154 9.464e-52 187.0 2EJD3@1|root,33834@2|Bacteria,4NVNH@976|Bacteroidetes,1ITYA@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Sporulation related domain - - - - - - - - - - - - SPOR DYD3_k127_5550005_0 700598.Niako_0151 2.944e-214 670.0 COG1473@1|root,COG1473@2|Bacteria,4NGBI@976|Bacteroidetes,1INTB@117747|Sphingobacteriia 976|Bacteroidetes S amidohydrolase - - - - - - - - - - - - M20_dimer,Peptidase_M20 DYD3_k127_5550005_2 504472.Slin_4777 4.052e-67 233.0 COG0526@1|root,COG0526@2|Bacteria,4NEX3@976|Bacteroidetes,47N2D@768503|Cytophagia 976|Bacteroidetes O Domain of unknown function (DUF4369) - - - - - - - - - - - - AhpC-TSA,DUF4369 DYD3_k127_5569876_1 700598.Niako_3030 5.212e-122 398.0 COG2017@1|root,COG2017@2|Bacteria,4NMWB@976|Bacteroidetes,1IPFY@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Aldose 1-epimerase lacX - - - - - - - - - - - Aldose_epim DYD3_k127_5569876_2 700598.Niako_3029 3.938e-73 252.0 COG1285@1|root,COG1285@2|Bacteria,4NRHK@976|Bacteroidetes,1ITN7@117747|Sphingobacteriia 976|Bacteroidetes S Magnesium transporter MgtC - - - ko:K07507 - - - - ko00000,ko02000 9.B.20 - - MgtC DYD3_k127_5569876_0 700598.Niako_3031 2.732e-201 633.0 COG0577@1|root,COG0577@2|Bacteria,4NECN@976|Bacteroidetes,1IR94@117747|Sphingobacteriia 976|Bacteroidetes V ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5569876_3 1267211.KI669560_gene1529 7.345e-67 231.0 COG0533@1|root,COG0533@2|Bacteria,4NE8E@976|Bacteroidetes,1INZZ@117747|Sphingobacteriia 976|Bacteroidetes O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction tsaD GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 ko:K01409 - - R10648 RC00070,RC00416 ko00000,ko01000,ko03016 - - - Peptidase_M22 DYD3_k127_5570253_0 1185876.BN8_01423 1.375e-150 498.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47M0S@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_5570253_1 1203611.KB894553_gene2368 6.904e-44 174.0 2CC76@1|root,3435K@2|Bacteria,4P48D@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5570253_2 641524.ADICYQ_1344 1.133e-10 63.0 COG3285@1|root,COG3285@2|Bacteria,4PNCY@976|Bacteroidetes 976|Bacteroidetes L dna ligase - - - - - - - - - - - - - DYD3_k127_5571258_1 517418.Ctha_2517 1.575e-12 76.0 COG0438@1|root,COG0438@2|Bacteria,1FFH4@1090|Chlorobi 1090|Chlorobi H TIGRFAM methyltransferase FkbM family - - - - - - - - - - - - Methyltransf_21 DYD3_k127_5571258_0 1175306.GWL_46470 3.548e-63 227.0 COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,2VHMP@28216|Betaproteobacteria,474HB@75682|Oxalobacteraceae 28216|Betaproteobacteria GM ABC-type polysaccharide polyol phosphate transport system, ATPase component rfbE - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C DYD3_k127_5571732_0 700598.Niako_6583 5.429e-144 458.0 COG0766@1|root,COG0766@2|Bacteria,4NDV8@976|Bacteroidetes,1IPZR@117747|Sphingobacteriia 976|Bacteroidetes M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase DYD3_k127_5571732_1 700598.Niako_6582 2.721e-82 277.0 COG0194@1|root,COG0194@2|Bacteria,4NEDG@976|Bacteroidetes,1IRC3@117747|Sphingobacteriia 976|Bacteroidetes F Essential for recycling GMP and indirectly, cGMP gmk GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 ko:K00942 ko00230,ko01100,map00230,map01100 M00050 R00332,R02090 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_kin DYD3_k127_5571732_2 700598.Niako_6581 5.086e-33 131.0 COG1253@1|root,COG1253@2|Bacteria,4NG0I@976|Bacteroidetes,1IX4W@117747|Sphingobacteriia 976|Bacteroidetes S Transporter associated domain tlyC - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,CorC_HlyC,DUF21 DYD3_k127_5583224_0 700598.Niako_6588 2.424e-148 470.0 COG2267@1|root,COG2267@2|Bacteria,4NF80@976|Bacteroidetes,1INU7@117747|Sphingobacteriia 976|Bacteroidetes I Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_1 DYD3_k127_5583224_2 700598.Niako_6587 8.315e-58 207.0 COG1286@1|root,COG1286@2|Bacteria,4P9DM@976|Bacteroidetes,1IZI5@117747|Sphingobacteriia 976|Bacteroidetes S Colicin V production protein - - - ko:K03558 - - - - ko00000 - - - Colicin_V DYD3_k127_5583224_1 700598.Niako_6586 2.007e-60 211.0 COG1610@1|root,COG1610@2|Bacteria,4NQFI@976|Bacteroidetes,1IT3W@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Yqey-like protein - - - ko:K09117 - - - - ko00000 - - - YqeY DYD3_k127_5583224_3 700598.Niako_6585 1.885e-44 164.0 2AGY9@1|root,3176X@2|Bacteria,4NQD4@976|Bacteroidetes,1ISTG@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM Gliding motility-associated protein, GldC gldC - - - - - - - - - - - - DYD3_k127_5583224_4 471854.Dfer_0617 6.812e-08 64.0 COG1404@1|root,COG1404@2|Bacteria,4NFMW@976|Bacteroidetes,47X9G@768503|Cytophagia 976|Bacteroidetes O PFAM peptidase S8 and S53 subtilisin kexin sedolisin - - - - - - - - - - - - PKD,Peptidase_S8 DYD3_k127_5585288_0 1185876.BN8_02272 2.683e-215 676.0 COG4225@1|root,COG4225@2|Bacteria,4NF1N@976|Bacteroidetes,47K76@768503|Cytophagia 976|Bacteroidetes S Heparinase II/III-like protein - - - - - - - - - - - - DUF4962,Hepar_II_III DYD3_k127_5585288_1 700598.Niako_5246 1.598e-161 515.0 COG1609@1|root,COG1609@2|Bacteria,4NDW6@976|Bacteroidetes,1IR17@117747|Sphingobacteriia 976|Bacteroidetes K Periplasmic binding protein LacI transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 DYD3_k127_5585288_2 1122605.KB893631_gene3924 8.953e-70 246.0 COG1331@1|root,COG1331@2|Bacteria,4PKHP@976|Bacteroidetes,1J0VB@117747|Sphingobacteriia 976|Bacteroidetes O Glycosyl Hydrolase Family 88 - - - - - - - - - - - - Glyco_hydro_88 DYD3_k127_5585288_3 429009.Adeg_0094 8.616e-07 54.0 COG1807@1|root,COG1807@2|Bacteria,1V0V2@1239|Firmicutes,24BJF@186801|Clostridia 186801|Clostridia M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - PMT_2 DYD3_k127_5585858_2 925409.KI911562_gene1679 1.124e-62 220.0 COG2808@1|root,COG2808@2|Bacteria,4NINW@976|Bacteroidetes,1IYCA@117747|Sphingobacteriia 976|Bacteroidetes K Putative FMN-binding domain - - - ko:K07734 - - - - ko00000,ko03000 - - - FMN_bind_2 DYD3_k127_5585858_0 700598.Niako_4561 4.07e-196 615.0 COG0489@1|root,COG0489@2|Bacteria,4NF5I@976|Bacteroidetes,1IQKF@117747|Sphingobacteriia 976|Bacteroidetes D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP mrp - - ko:K03593 - - - - ko00000,ko03029,ko03036 - - - FeS_assembly_P,ParA DYD3_k127_5585858_1 700598.Niako_4562 4.547e-93 308.0 2BBSK@1|root,32XPV@2|Bacteria,4NSW3@976|Bacteroidetes,1J0TI@117747|Sphingobacteriia 976|Bacteroidetes S CarboxypepD_reg-like domain - - - - - - - - - - - - CarbopepD_reg_2 DYD3_k127_5597201_7 700598.Niako_4448 4.869e-55 194.0 COG2370@1|root,COG2370@2|Bacteria,4NMRP@976|Bacteroidetes 976|Bacteroidetes O HupE UreJ protein - - - - - - - - - - - - HupE_UreJ_2 DYD3_k127_5597201_4 700598.Niako_4447 8.463e-59 208.0 2AE6H@1|root,3140B@2|Bacteria,4NSDV@976|Bacteroidetes,1ITY6@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5597201_6 485918.Cpin_3714 5.303e-56 206.0 COG4099@1|root,COG4932@1|root,COG4099@2|Bacteria,COG4932@2|Bacteria,4NP7H@976|Bacteroidetes 976|Bacteroidetes M Fibronectin type 3 domain - - - - - - - - - - - - - DYD3_k127_5597201_2 929713.NIASO_19720 1.284e-198 626.0 COG1253@1|root,COG1253@2|Bacteria,4NE9R@976|Bacteroidetes,1IP76@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG1253 Hemolysins and related protein containing CBS domains corC_1 - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,CorC_HlyC,DUF21 DYD3_k127_5597201_3 700598.Niako_4445 1.431e-88 297.0 COG0671@1|root,COG0671@2|Bacteria,4NNVQ@976|Bacteroidetes,1ISC5@117747|Sphingobacteriia 976|Bacteroidetes I Phosphoesterase PA-phosphatase related - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 DYD3_k127_5597201_0 700598.Niako_4444 6.008e-276 863.0 COG1368@1|root,COG1368@2|Bacteria,4NFI9@976|Bacteroidetes,1IP53@117747|Sphingobacteriia 976|Bacteroidetes M PFAM sulfatase - - - - - - - - - - - - Sulfatase DYD3_k127_5597201_8 926562.Oweho_2900 1.528e-54 215.0 COG1874@1|root,COG3211@1|root,COG1874@2|Bacteria,COG3211@2|Bacteria,4NEFS@976|Bacteroidetes 976|Bacteroidetes G Belongs to the glycosyl hydrolase 5 (cellulase A) family - - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - CBM_6,Glyco_hydro_42 DYD3_k127_5597201_5 700598.Niako_4443 6.403e-58 206.0 COG2227@1|root,COG2227@2|Bacteria,4PKUR@976|Bacteroidetes,1J0TH@117747|Sphingobacteriia 976|Bacteroidetes H Thiopurine S-methyltransferase (TPMT) - - - - - - - - - - - - Methyltransf_23,Methyltransf_25,Methyltransf_31 DYD3_k127_5597201_1 700598.Niako_4442 1.234e-251 781.0 COG1109@1|root,COG1109@2|Bacteria,4NG3H@976|Bacteroidetes,1IP3X@117747|Sphingobacteriia 976|Bacteroidetes G Phosphoglucomutase phosphomannomutase alpha beta alpha domain I glmM - 5.4.2.8 ko:K01840 ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130 M00114 R01818 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV DYD3_k127_5597201_9 1123278.KB893403_gene3373 1.939e-28 119.0 COG1396@1|root,COG1396@2|Bacteria,4NRWV@976|Bacteroidetes,47RY8@768503|Cytophagia 976|Bacteroidetes K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_19,HTH_3,HTH_31 DYD3_k127_5597201_10 1249975.JQLP01000005_gene2784 1.509e-16 80.0 COG3550@1|root,COG3550@2|Bacteria,4NFYY@976|Bacteroidetes,1HXAI@117743|Flavobacteriia 976|Bacteroidetes S Pfam:HipA_N - - 2.7.11.1 ko:K07154 - - - - ko00000,ko01000,ko01001,ko02048 - - - Couple_hipA,HipA_C DYD3_k127_5602435_1 700598.Niako_6634 3.043e-135 435.0 COG0451@1|root,COG0451@2|Bacteria,4NFZH@976|Bacteroidetes,1IQ5S@117747|Sphingobacteriia 976|Bacteroidetes M NAD dependent epimerase dehydratase family - - 1.1.1.219 ko:K00091 - - - - ko00000,ko01000 - - - Epimerase,NAD_binding_4 DYD3_k127_5602435_0 700598.Niako_6633 4.36e-154 496.0 COG1629@1|root,COG1629@2|Bacteria,4NQGN@976|Bacteroidetes,1ITAT@117747|Sphingobacteriia 976|Bacteroidetes P CarboxypepD_reg-like domain - - - - - - - - - - - - CarbopepD_reg_2 DYD3_k127_5602435_2 700598.Niako_6632 2.178e-66 235.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IPPI@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - HATPase_c,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_5602435_3 700598.Niako_6632 4.749e-11 64.0 COG2972@1|root,COG3292@1|root,COG2972@2|Bacteria,COG3292@2|Bacteria,4NFZB@976|Bacteroidetes,1IPPI@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - HATPase_c,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_5605404_3 1123252.ATZF01000007_gene309 7.167e-17 85.0 2CEKB@1|root,346BK@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_5605404_0 509635.N824_05985 3.36e-101 339.0 COG2972@1|root,COG2972@2|Bacteria,4NHM5@976|Bacteroidetes,1IVD5@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c_5,His_kinase DYD3_k127_5605404_1 509635.N824_05980 2.262e-96 320.0 COG3279@1|root,COG3279@2|Bacteria,4NI3K@976|Bacteroidetes,1J04E@117747|Sphingobacteriia 976|Bacteroidetes K Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_5605404_2 452637.Oter_2265 6.611e-22 108.0 COG3391@1|root,COG3391@2|Bacteria,46UA2@74201|Verrucomicrobia 74201|Verrucomicrobia O PFAM NHL repeat containing protein - - - - - - - - - - - - Ig_3,NHL DYD3_k127_561085_3 1123248.KB893317_gene4285 8.091e-91 302.0 COG2605@1|root,COG2605@2|Bacteria,4NHEN@976|Bacteroidetes,1IU21@117747|Sphingobacteriia 976|Bacteroidetes S GHMP kinases N terminal domain - - 2.7.1.168 ko:K07031 ko00540,map00540 - R09770 RC00002,RC00078 ko00000,ko00001,ko01000 - - - Fucokinase,GHMP_kinases_C,GHMP_kinases_N DYD3_k127_561085_0 700598.Niako_2546 7.672e-181 572.0 COG0438@1|root,COG0438@2|Bacteria,4NEZI@976|Bacteroidetes,1IPPF@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Glycosyl transferase, group 1 - - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD3_k127_561085_1 700598.Niako_2545 9.945e-159 504.0 COG1215@1|root,COG1215@2|Bacteria,4PKF3@976|Bacteroidetes,1J0R0@117747|Sphingobacteriia 976|Bacteroidetes M glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 DYD3_k127_561085_4 925409.KI911562_gene2210 3.335e-18 91.0 2ADZU@1|root,313SD@2|Bacteria,4PK7E@976|Bacteroidetes,1IUKW@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF4199) - - - - - - - - - - - - DUF4199 DYD3_k127_561085_2 700598.Niako_2543 1.894e-149 477.0 COG0044@1|root,COG0044@2|Bacteria,4NDUZ@976|Bacteroidetes,1IRB4@117747|Sphingobacteriia 976|Bacteroidetes F Dihydroorotase, multifunctional complex type pyrC - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 DYD3_k127_5612275_1 1459636.NTE_02664 7.278e-26 119.0 COG1409@1|root,arCOG06534@1|root,arCOG07781@1|root,arCOG09729@1|root,arCOG06534@2157|Archaea,arCOG07781@2157|Archaea,arCOG09729@2157|Archaea,arCOG11020@2157|Archaea 2157|Archaea S cell adhesion involved in biofilm formation - - - - - - - - - - - - Big_1,CHB_HEX_C_1,He_PIG,PKD,Polysacc_deac_1 DYD3_k127_5612275_0 700598.Niako_7013 4.413e-120 389.0 COG3279@1|root,COG3279@2|Bacteria,4NEAH@976|Bacteroidetes,1IQME@117747|Sphingobacteriia 976|Bacteroidetes K response regulator, receiver - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_5627355_0 1267211.KI669560_gene211 1.377e-49 184.0 COG1595@1|root,COG1595@2|Bacteria,4NMAK@976|Bacteroidetes 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_5627355_1 700598.Niako_6549 1.564e-17 85.0 COG5375@1|root,COG5375@2|Bacteria,4PNV6@976|Bacteroidetes,1J0U1@117747|Sphingobacteriia 976|Bacteroidetes S Lipopolysaccharide-assembly, LptC-related - - - - - - - - - - - - LptC DYD3_k127_5631597_2 755732.Fluta_0716 6.893e-74 264.0 COG1835@1|root,COG1835@2|Bacteria,4PIH2@976|Bacteroidetes,1IGD6@117743|Flavobacteriia,2PBU2@246874|Cryomorphaceae 2|Bacteria I Acyltransferase family - - - - - - - - - - - - Acyl_transf_3 DYD3_k127_5631597_1 700598.Niako_4724 8.784e-121 392.0 COG0283@1|root,COG0283@2|Bacteria,4NEMB@976|Bacteroidetes,1IRY5@117747|Sphingobacteriia 976|Bacteroidetes F Belongs to the cytidylate kinase family. Type 1 subfamily cmk GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 ko:K00945 ko00240,ko01100,map00240,map01100 M00052 R00158,R00512,R01665 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Cytidylate_kin DYD3_k127_5631597_0 700598.Niako_4725 0.0 1574.0 COG0542@1|root,COG0542@2|Bacteria,4NE1J@976|Bacteroidetes,1IPYI@117747|Sphingobacteriia 976|Bacteroidetes O with chaperone activity ATP-binding subunit clpC - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N,UVR DYD3_k127_5631597_3 700598.Niako_4726 1.99e-44 164.0 COG1366@1|root,COG1366@2|Bacteria 2|Bacteria T antisigma factor binding - - - ko:K04749 - - - - ko00000,ko03021 - - - STAS,STAS_2 DYD3_k127_5631597_4 700598.Niako_4727 3.736e-32 126.0 COG1211@1|root,COG1211@2|Bacteria,4NMB5@976|Bacteroidetes,1ISX6@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) ispD GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 ko:K00991 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633 RC00002 ko00000,ko00001,ko00002,ko01000 - - - IspD DYD3_k127_5635699_0 700598.Niako_3643 2.427e-137 439.0 COG5297@1|root,COG5297@2|Bacteria,4PKPX@976|Bacteroidetes,1IV41@117747|Sphingobacteriia 976|Bacteroidetes G Fg-gap repeat - - 4.2.2.23 ko:K18197 - - - - ko00000,ko01000 - PL11 - - DYD3_k127_5635699_1 700598.Niako_3642 2.208e-111 364.0 COG2755@1|root,COG2755@2|Bacteria,4NG1M@976|Bacteroidetes,1IQF7@117747|Sphingobacteriia 976|Bacteroidetes E GDSL-like Lipase/Acylhydrolase family - - - - - - - - - - - - Lipase_GDSL_2 DYD3_k127_5640269_3 929556.Solca_1538 3.184e-124 402.0 COG1482@1|root,COG1940@1|root,COG1482@2|Bacteria,COG1940@2|Bacteria,4NF9A@976|Bacteroidetes,1IP62@117747|Sphingobacteriia 976|Bacteroidetes GK ROK family - - - - - - - - - - - - ROK DYD3_k127_5640269_1 1454007.JAUG01000054_gene2586 3.76e-212 666.0 COG0477@1|root,COG2814@2|Bacteria,4NE09@976|Bacteroidetes 976|Bacteroidetes EGP Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family araE - - ko:K02100 - - - - ko00000,ko02000 2.A.1.1.2 - - Sugar_tr DYD3_k127_5640269_2 1492737.FEM08_17290 7.651e-206 647.0 COG3387@1|root,COG3387@2|Bacteria,4NGFS@976|Bacteroidetes,1I0H9@117743|Flavobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase 15-related - - - - - - - - - - - - GDE_C,Glyco_hydro_36 DYD3_k127_5640269_0 1123248.KB893332_gene2263 0.0 1437.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IP40@117747|Sphingobacteriia 976|Bacteroidetes S SPTR ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_5641151_1 700598.Niako_1558 1.531e-14 74.0 COG1733@1|root,COG1733@2|Bacteria,4NX9B@976|Bacteroidetes,1J0E2@117747|Sphingobacteriia 976|Bacteroidetes K PFAM Helix-turn-helix, HxlR type - - - - - - - - - - - - HxlR DYD3_k127_5641151_0 1123248.KB893331_gene3747 1.46e-201 633.0 COG1415@1|root,COG1415@2|Bacteria,4NG24@976|Bacteroidetes,1IR2S@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF763) - - - ko:K09003 - - - - ko00000 - - - DUF763 DYD3_k127_5641864_0 700598.Niako_5269 1.22e-112 366.0 COG1236@1|root,COG1236@2|Bacteria,4NESD@976|Bacteroidetes,1IQ1N@117747|Sphingobacteriia 976|Bacteroidetes J exonuclease of the beta-lactamase fold involved in RNA processing - - - ko:K07576 - - - - ko00000 - - - Beta-Casp,Lactamase_B,Lactamase_B_6,RMMBL DYD3_k127_5641864_1 700598.Niako_5270 7.615e-65 225.0 COG2050@1|root,COG2050@2|Bacteria,4NNXM@976|Bacteroidetes,1IY7V@117747|Sphingobacteriia 976|Bacteroidetes Q Domain of unknown function (DUF4442) - - - - - - - - - - - - DUF4442 DYD3_k127_5643399_3 700598.Niako_2711 1.062e-07 55.0 COG0546@1|root,COG0546@2|Bacteria,4NMEX@976|Bacteroidetes,1IS6P@117747|Sphingobacteriia 976|Bacteroidetes S HAD-hyrolase-like - - - - - - - - - - - - HAD_2 DYD3_k127_5643399_2 700598.Niako_2712 2.451e-80 271.0 COG4341@1|root,COG4341@2|Bacteria,4NPMZ@976|Bacteroidetes,1ITIZ@117747|Sphingobacteriia 976|Bacteroidetes S HD domain - - 1.13.11.78 ko:K21196 ko00440,map00440 - R10722 RC03261 ko00000,ko00001,ko01000 - - - HD DYD3_k127_5643399_1 929562.Emtol_0955 7.063e-129 422.0 COG0696@1|root,COG0696@2|Bacteria,4PNG1@976|Bacteroidetes,47YK3@768503|Cytophagia 976|Bacteroidetes G Type I phosphodiesterase / nucleotide pyrophosphatase - - - - - - - - - - - - Metalloenzyme,Phosphodiest DYD3_k127_5643399_0 1408813.AYMG01000003_gene2755 7.017e-185 589.0 COG0521@1|root,COG0521@2|Bacteria,4NG3I@976|Bacteroidetes,1IQX1@117747|Sphingobacteriia 976|Bacteroidetes H Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_5647181_5 765913.ThidrDRAFT_1810 6.991e-05 54.0 COG3291@1|root,COG3291@2|Bacteria,1R5MU@1224|Proteobacteria,1RZ6G@1236|Gammaproteobacteria,1X1H2@135613|Chromatiales 135613|Chromatiales S Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - - - - - - - - - - PKD DYD3_k127_5647181_1 1286632.P278_26490 1.279e-16 86.0 COG4319@1|root,COG4319@2|Bacteria,4NTU3@976|Bacteroidetes,1I52V@117743|Flavobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 DYD3_k127_5647181_2 1233950.IW22_23725 7.014e-07 52.0 28T18@1|root,2ZFAI@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_5647181_4 886377.Murru_1554 3.744e-05 48.0 COG2361@1|root,COG2361@2|Bacteria,4NV8D@976|Bacteroidetes,1I755@117743|Flavobacteriia 976|Bacteroidetes S Protein of unknown function DUF86 - - - - - - - - - - - - DUF86 DYD3_k127_5647181_3 194867.ALBQ01000011_gene384 4.18e-06 49.0 COG4206@1|root,COG4206@2|Bacteria,1R47X@1224|Proteobacteria,2TW4W@28211|Alphaproteobacteria,2JZYG@204457|Sphingomonadales 204457|Sphingomonadales H receptor - - - - - - - - - - - - Plug DYD3_k127_5647181_0 700598.Niako_1035 1.975e-64 226.0 COG2905@1|root,COG2905@2|Bacteria,4NTKX@976|Bacteroidetes,1J0SE@117747|Sphingobacteriia 976|Bacteroidetes T Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS DYD3_k127_565021_0 700598.Niako_6901 2.704e-308 952.0 COG1132@1|root,COG1132@2|Bacteria,4NEAG@976|Bacteroidetes,1IQFU@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter - - - ko:K18890 ko02010,map02010 M00707 - - ko00000,ko00001,ko00002,ko02000 3.A.1.106.13,3.A.1.106.5 - - ABC_membrane,ABC_tran DYD3_k127_565021_7 1408813.AYMG01000034_gene4482 5.337e-22 96.0 COG4914@1|root,COG4914@2|Bacteria,4NTQ4@976|Bacteroidetes,1ITBS@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_565021_8 1358423.N180_13915 0.0002896 45.0 COG4914@1|root,COG4914@2|Bacteria,4NT8U@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_565021_1 700598.Niako_6902 1.376e-162 521.0 COG0356@1|root,COG0356@2|Bacteria,4NEPK@976|Bacteroidetes,1IPTF@117747|Sphingobacteriia 976|Bacteroidetes C it plays a direct role in the translocation of protons across the membrane atpB - - ko:K02108 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko03110 3.A.2.1 - - ATP-synt_A DYD3_k127_565021_5 700598.Niako_6903 2.235e-29 119.0 COG0636@1|root,COG0636@2|Bacteria,4NURW@976|Bacteroidetes,1ITY0@117747|Sphingobacteriia 976|Bacteroidetes C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpE GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - ko:K02110 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_C DYD3_k127_565021_2 700598.Niako_6904 8.272e-74 251.0 COG0711@1|root,COG0711@2|Bacteria,4NQKA@976|Bacteroidetes,1ISAN@117747|Sphingobacteriia 976|Bacteroidetes C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) atpF - - ko:K02109 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_B DYD3_k127_565021_3 700598.Niako_6905 1.884e-73 251.0 COG0712@1|root,COG0712@2|Bacteria,4NSNF@976|Bacteroidetes,1ITDM@117747|Sphingobacteriia 976|Bacteroidetes C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpH - - ko:K02113 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - OSCP DYD3_k127_565021_6 700598.Niako_6906 5.676e-23 98.0 COG0056@1|root,COG0056@2|Bacteria,4NFZW@976|Bacteroidetes,1IP4E@117747|Sphingobacteriia 976|Bacteroidetes C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit atpA - 3.6.3.14 ko:K02111 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N DYD3_k127_565056_1 509635.N824_19555 4.818e-306 962.0 COG0642@1|root,COG0745@1|root,COG3292@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NDXU@976|Bacteroidetes,1IQU5@117747|Sphingobacteriia 976|Bacteroidetes T Two-component system sensor histidine kinase response regulator hybrid - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_565056_0 1123248.KB893348_gene369 0.0 1163.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes 976|Bacteroidetes H TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_565056_2 1123248.KB893348_gene370 2.137e-82 279.0 COG3637@1|root,COG3637@2|Bacteria,4NE4Y@976|Bacteroidetes,1IQKD@117747|Sphingobacteriia 976|Bacteroidetes M SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_5654804_5 700598.Niako_5859 4.351e-55 195.0 COG2885@1|root,COG2885@2|Bacteria,4NJ85@976|Bacteroidetes,1IVIA@117747|Sphingobacteriia 976|Bacteroidetes M COGs COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein - - - - - - - - - - - - OmpA DYD3_k127_5654804_2 700598.Niako_5860 3.657e-125 404.0 COG0600@1|root,COG0600@2|Bacteria,4NQ8G@976|Bacteroidetes,1IXG0@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG0600 ABC-type nitrate sulfonate bicarbonate transport system permease component - - - ko:K02050 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - BPD_transp_1 DYD3_k127_5654804_3 700598.Niako_5861 2.704e-117 384.0 COG1116@1|root,COG1116@2|Bacteria,4NNV0@976|Bacteroidetes,1IY1G@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG1116 ABC-type nitrate sulfonate bicarbonate transport system ATPase component - - 3.6.3.25 ko:K02045,ko:K02049 ko00920,ko02010,map00920,map02010 M00185,M00188 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.16,3.A.1.17,3.A.1.6.1,3.A.1.6.3 - - ABC_tran DYD3_k127_5654804_1 471854.Dfer_4719 4.14e-153 491.0 COG4247@1|root,COG4247@2|Bacteria,4NH2W@976|Bacteroidetes,47N7A@768503|Cytophagia 976|Bacteroidetes I Phytase - - 3.1.3.8 ko:K01083 ko00562,map00562 - R03371 RC00078 ko00000,ko00001,ko01000 - - - Phytase DYD3_k127_5654804_0 926562.Oweho_2522 0.0 1091.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,4NFAM@976|Bacteroidetes,1HWUQ@117743|Flavobacteriia 976|Bacteroidetes P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_5655014_1 316067.Geob_3377 1.621e-43 169.0 COG0392@1|root,COG0392@2|Bacteria,1R98C@1224|Proteobacteria,42U6V@68525|delta/epsilon subdivisions,2WKTZ@28221|Deltaproteobacteria,43W1F@69541|Desulfuromonadales 28221|Deltaproteobacteria S Lysylphosphatidylglycerol synthase TM region - - - ko:K07027 - - - - ko00000,ko02000 4.D.2 - - LPG_synthase_TM DYD3_k127_5655014_0 880073.Calab_1856 1.826e-69 242.0 COG0012@1|root,COG0012@2|Bacteria,2NNNF@2323|unclassified Bacteria 2|Bacteria J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner ychF GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030234,GO:0043021,GO:0043022,GO:0043023,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0098772 - ko:K06942 - - - - ko00000,ko03009 - - - MMR_HSR1,YchF-GTPase_C DYD3_k127_5664323_0 1267211.KI669560_gene1009 6.613e-194 610.0 COG3669@1|root,COG3669@2|Bacteria,4NE74@976|Bacteroidetes,1IVGH@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-L-fucosidase fucA - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos DYD3_k127_5664323_1 143224.JQMD01000002_gene128 4.889e-97 320.0 28HBM@1|root,2Z7NK@2|Bacteria,4NKA6@976|Bacteroidetes,1I8IP@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5673597_0 700598.Niako_7354 6.67e-239 743.0 COG0178@1|root,COG0178@2|Bacteria,4NEHM@976|Bacteroidetes,1IQY4@117747|Sphingobacteriia 976|Bacteroidetes L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA1 - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - AAA_21,ABC_tran DYD3_k127_5673597_1 700598.Niako_7353 3.363e-118 380.0 COG1595@1|root,COG1595@2|Bacteria,4NF93@976|Bacteroidetes,1INYP@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily rpoE - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4,Sigma70_r4_2 DYD3_k127_5673597_2 485918.Cpin_7029 1.821e-05 46.0 COG4232@1|root,COG4232@2|Bacteria,4NEW6@976|Bacteroidetes,1IQXN@117747|Sphingobacteriia 976|Bacteroidetes CO Cytochrome c biogenesis protein transmembrane region dsbD - 1.8.1.8 ko:K04084 - - - - ko00000,ko01000,ko03110 5.A.1.1 - - DsbC,DsbD,Thioredoxin_7 DYD3_k127_5677478_4 925409.KI911562_gene1598 1.39e-19 90.0 COG2211@1|root,COG2211@2|Bacteria,4NE0X@976|Bacteroidetes,1J0SK@117747|Sphingobacteriia 976|Bacteroidetes G Nucleoside H+ symporter - - - - - - - - - - - - Nuc_H_symport DYD3_k127_5677478_1 700598.Niako_2200 1.636e-280 867.0 COG2986@1|root,COG2986@2|Bacteria,4NE0D@976|Bacteroidetes 976|Bacteroidetes E Histidine ammonia-lyase hutH - 4.3.1.3 ko:K01745 ko00340,ko01100,map00340,map01100 M00045 R01168 RC00361 ko00000,ko00001,ko00002,ko01000 - - - Lyase_aromatic DYD3_k127_5677478_5 620914.JH621281_gene138 8.713e-08 57.0 COG3668@1|root,COG3668@2|Bacteria,4NU0V@976|Bacteroidetes,1I4VW@117743|Flavobacteriia 976|Bacteroidetes S Plasmid stabilization system - - - - - - - - - - - - ParE_toxin DYD3_k127_5677478_3 929562.Emtol_1279 1.311e-70 241.0 COG2987@1|root,COG2987@2|Bacteria,4NF2P@976|Bacteroidetes,47K5S@768503|Cytophagia 976|Bacteroidetes E Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate hutU - 4.2.1.49 ko:K01712 ko00340,ko01100,map00340,map01100 M00045 R02914 RC00804 ko00000,ko00001,ko00002,ko01000 - - - Urocanase,Urocanase_C,Urocanase_N DYD3_k127_5677478_2 700598.Niako_2199 5.763e-240 745.0 COG2987@1|root,COG2987@2|Bacteria,4NF2P@976|Bacteroidetes,1IR41@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate hutU - 4.2.1.49 ko:K01712 ko00340,ko01100,map00340,map01100 M00045 R02914 RC00804 ko00000,ko00001,ko00002,ko01000 - - - Urocanase,Urocanase_C,Urocanase_N DYD3_k127_5677478_0 700598.Niako_2197 0.0 1096.0 COG0380@1|root,COG1877@1|root,COG0380@2|Bacteria,COG1877@2|Bacteria,4NGJ4@976|Bacteroidetes,1IVIN@117747|Sphingobacteriia 976|Bacteroidetes G Trehalose-phosphatase - - 2.4.1.15,3.1.3.12 ko:K16055 ko00500,ko01100,map00500,map01100 - R02737,R02778 RC00005,RC00017,RC00049,RC02748 ko00000,ko00001,ko01000,ko01003 - GT20 - Glyco_transf_20,Trehalose_PPase DYD3_k127_5678994_3 1227739.Hsw_3789 1.443e-82 291.0 COG1404@1|root,COG3291@1|root,COG1404@2|Bacteria,COG3291@2|Bacteria,4NGRJ@976|Bacteroidetes,47JD6@768503|Cytophagia 976|Bacteroidetes O PFAM Pregnancy-associated plasma protein-A - - - - - - - - - - - - Peptidase_M43 DYD3_k127_5678994_1 700598.Niako_4387 2.937e-162 520.0 COG0665@1|root,COG0665@2|Bacteria,4NEEY@976|Bacteroidetes,1IPIG@117747|Sphingobacteriia 976|Bacteroidetes E FAD dependent oxidoreductase - - - - - - - - - - - - DAO DYD3_k127_5678994_2 700598.Niako_4386 5.952e-106 349.0 2C8XG@1|root,2Z7PK@2|Bacteria,4NEU8@976|Bacteroidetes,1IQC4@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF4197) - - - - - - - - - - - - DUF4197 DYD3_k127_5678994_0 700598.Niako_4385 9.935e-185 579.0 COG1249@1|root,COG1249@2|Bacteria,4NDVC@976|Bacteroidetes,1IQG6@117747|Sphingobacteriia 976|Bacteroidetes C COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) - - 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Biotin_lipoyl,Pyr_redox_2,Pyr_redox_dim DYD3_k127_5679448_1 1122218.KB893653_gene1372 2.848e-47 186.0 COG2304@1|root,COG2304@2|Bacteria 2|Bacteria IU oxidoreductase activity - - 1.14.18.1 ko:K00505 ko00350,ko00950,ko00965,ko01100,ko01110,ko04916,map00350,map00950,map00965,map01100,map01110,map04916 M00042 R00731,R02078,R02363,R02383,R04693,R04884 RC00046,RC00150,RC00180 ko00000,ko00001,ko00002,ko01000 - - - Calx-beta,PPO1_DWL,PPO1_KFDV,Tyrosinase,VWA_2 DYD3_k127_5679448_0 1185876.BN8_04310 2.523e-209 661.0 COG1621@1|root,COG1621@2|Bacteria,4NEYI@976|Bacteroidetes,47KIP@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 32 family - - 3.2.1.80 ko:K03332 ko00051,map00051 - R00879 - ko00000,ko00001,ko01000 - - - Glyco_hydro_32C,Glyco_hydro_32N DYD3_k127_5679448_2 929713.NIASO_09345 1.005e-38 148.0 COG3669@1|root,COG3669@2|Bacteria,4NEAP@976|Bacteroidetes,1IPR6@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-L-fucosidase - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,Fucosidase_C DYD3_k127_5684515_1 700598.Niako_1204 9.403e-121 400.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IQ9X@117747|Sphingobacteriia 976|Bacteroidetes V InterPro IPR003838 - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_5684515_0 700598.Niako_5193 1.397e-290 911.0 COG0577@1|root,COG0577@2|Bacteria,4P0QD@976|Bacteroidetes,1IUV8@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_5686931_2 700598.Niako_6615 5.311e-37 143.0 COG3296@1|root,COG3296@2|Bacteria 2|Bacteria S Domain of unknown function (DUF4870) - - - ko:K09940 - - - - ko00000 - - - DUF4870,HTH_3,SHOCT DYD3_k127_5686931_0 700598.Niako_6616 3.728e-114 376.0 COG2234@1|root,COG2234@2|Bacteria,4NMZ4@976|Bacteroidetes,1IRUC@117747|Sphingobacteriia 976|Bacteroidetes S peptidase - - - - - - - - - - - - Peptidase_M28 DYD3_k127_5686931_1 700598.Niako_6617 6.119e-79 265.0 COG0042@1|root,COG0042@2|Bacteria,4NEN4@976|Bacteroidetes,1IP3N@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines dus - - - - - - - - - - - Dus DYD3_k127_5688914_0 700598.Niako_6418 8.041e-227 704.0 COG0017@1|root,COG0017@2|Bacteria,4NDY4@976|Bacteroidetes,1IPJK@117747|Sphingobacteriia 976|Bacteroidetes J Asparaginyl-tRNA synthetase asnS - 6.1.1.22 ko:K01893 ko00970,map00970 M00359,M00360 R03648 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon DYD3_k127_5688914_1 700598.Niako_6419 2.042e-96 323.0 COG0589@1|root,COG0589@2|Bacteria,4PICK@976|Bacteroidetes,1IXMG@117747|Sphingobacteriia 976|Bacteroidetes T Universal stress protein family - - - - - - - - - - - - Usp DYD3_k127_5688914_3 573063.Metin_0259 7.665e-08 58.0 COG2456@1|root,arCOG05092@2157|Archaea,2XZCE@28890|Euryarchaeota,23R5T@183939|Methanococci 183939|Methanococci S Uncharacterized conserved protein (DUF2304) - - - ko:K09153 - - - - ko00000 - - - DUF2304 DYD3_k127_5688914_2 1122605.KB893634_gene4209 1.083e-60 217.0 COG1216@1|root,COG1216@2|Bacteria,4NETR@976|Bacteroidetes,1J11G@117747|Sphingobacteriia 976|Bacteroidetes M Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 DYD3_k127_5713669_2 700598.Niako_1945 5.424e-18 84.0 COG5456@1|root,COG5456@2|Bacteria 2|Bacteria P FixH fixH - - - - - - - - - - - FixH DYD3_k127_5713669_1 700598.Niako_1946 2.827e-83 283.0 COG2836@1|root,COG2836@2|Bacteria,4NF84@976|Bacteroidetes,1ISIU@117747|Sphingobacteriia 976|Bacteroidetes S Cytochrome C biogenesis protein transmembrane region - - - ko:K09792 - - - - ko00000 - - - DsbD_2 DYD3_k127_5713669_0 700598.Niako_1947 1.31e-163 523.0 COG0642@1|root,COG2205@2|Bacteria,4NG0Y@976|Bacteroidetes,1IPHZ@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,PAS,PAS_9 DYD3_k127_5715619_0 700598.Niako_4440 6.086e-196 623.0 COG1070@1|root,COG1070@2|Bacteria,4NFBG@976|Bacteroidetes,1IPCF@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the FGGY kinase family - - 2.7.1.12 ko:K00851 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200 - R01737 RC00002,RC00017 ko00000,ko00001,ko01000 - - - FGGY_C,FGGY_N DYD3_k127_5715619_1 742767.HMPREF9456_01070 4.715e-115 386.0 COG0366@1|root,COG0366@2|Bacteria,4NEVK@976|Bacteroidetes,2FNVI@200643|Bacteroidia,22WSY@171551|Porphyromonadaceae 976|Bacteroidetes G Alpha amylase, catalytic domain protein amyB - - - - - - - - - - - Alpha-amylase,Alpha-amylase_C,DUF3459,Malt_amylase_C DYD3_k127_5715619_2 925409.KI911562_gene2871 3.217e-50 179.0 COG1104@1|root,COG1104@2|Bacteria,4NFF6@976|Bacteroidetes,1INRF@117747|Sphingobacteriia 976|Bacteroidetes E Cysteine desulfurase iscS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 DYD3_k127_572036_1 700598.Niako_4680 6.378e-126 404.0 COG0090@1|root,COG0090@2|Bacteria,4NE8G@976|Bacteroidetes,1INT6@117747|Sphingobacteriia 976|Bacteroidetes J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity rplB GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02886 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L2,Ribosomal_L2_C DYD3_k127_572036_5 700598.Niako_4679 1.539e-48 174.0 COG0185@1|root,COG0185@2|Bacteria,4NQ8T@976|Bacteroidetes,1ISXF@117747|Sphingobacteriia 976|Bacteroidetes J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA rpsS GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - ko:K02965 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S19 DYD3_k127_572036_4 700598.Niako_4678 3.505e-58 204.0 COG0091@1|root,COG0091@2|Bacteria,4NQ8E@976|Bacteroidetes,1ISMN@117747|Sphingobacteriia 976|Bacteroidetes J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome rplV GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02890 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L22 DYD3_k127_572036_0 700598.Niako_4677 9.831e-148 471.0 COG0092@1|root,COG0092@2|Bacteria,4NE9F@976|Bacteroidetes,1IPKE@117747|Sphingobacteriia 976|Bacteroidetes J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation rpsC GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02982 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KH_2,Ribosomal_S3_C DYD3_k127_572036_2 700598.Niako_4676 1.088e-76 258.0 COG0197@1|root,COG0197@2|Bacteria,4NM87@976|Bacteroidetes,1IRSN@117747|Sphingobacteriia 976|Bacteroidetes J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs rplP GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - ko:K02878 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L16 DYD3_k127_572036_7 700598.Niako_4675 2.815e-24 103.0 COG0255@1|root,COG0255@2|Bacteria,4P9VV@976|Bacteroidetes,1IU24@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the universal ribosomal protein uL29 family rpmC - - ko:K02904 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L29 DYD3_k127_572036_6 700598.Niako_4674 3.082e-41 154.0 COG0186@1|root,COG0186@2|Bacteria,4NSB2@976|Bacteroidetes,1IT9T@117747|Sphingobacteriia 976|Bacteroidetes J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA rpsQ GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02961 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S17 DYD3_k127_572036_3 700598.Niako_4673 1.23e-71 243.0 COG0093@1|root,COG0093@2|Bacteria,4NNM6@976|Bacteroidetes,1ISEA@117747|Sphingobacteriia 976|Bacteroidetes J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome rplN GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - ko:K02874 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L14 DYD3_k127_573463_1 929703.KE386491_gene1729 1.381e-46 170.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_573463_0 1185876.BN8_00862 2.754e-256 812.0 COG0577@1|root,COG0577@2|Bacteria,4P1TM@976|Bacteroidetes,47UF9@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_5739292_2 700598.Niako_0386 3.067e-47 170.0 COG1917@1|root,COG1917@2|Bacteria,4NMAI@976|Bacteroidetes 976|Bacteroidetes S PFAM Cupin 2, conserved barrel - - - - - - - - - - - - Cupin_2 DYD3_k127_5739292_1 700598.Niako_0385 2.651e-151 486.0 COG0845@1|root,COG0845@2|Bacteria,4NDW5@976|Bacteroidetes,1IRH3@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K15727 - - - - ko00000,ko02000 8.A.1.2.1 - - HlyD_D23 DYD3_k127_5739292_0 700598.Niako_0384 5.208e-209 663.0 COG1538@1|root,COG3696@1|root,COG1538@2|Bacteria,COG3696@2|Bacteria,4P36A@976|Bacteroidetes 976|Bacteroidetes P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K15726 - - - - ko00000,ko02000 2.A.6.1.2 - - ACR_tran,OEP DYD3_k127_5754782_3 1185876.BN8_00550 2.68e-18 90.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4,Glycos_transf_1 DYD3_k127_5754782_2 1194972.MVAC_06257 1.249e-31 137.0 COG0438@1|root,COG0438@2|Bacteria,2GMVU@201174|Actinobacteria,236AY@1762|Mycobacteriaceae 201174|Actinobacteria M Glycosyl transferase 4-like domain - - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 DYD3_k127_5754782_0 700598.Niako_6781 1.935e-183 578.0 COG2192@1|root,COG2192@2|Bacteria,4NEV9@976|Bacteroidetes,1IWJ0@117747|Sphingobacteriia 976|Bacteroidetes H COGs COG2192 carbamoyl transferase NodU family - - - ko:K00612 - - - - ko00000,ko01000 - - - Carbam_trans_C,Carbam_trans_N DYD3_k127_576314_4 1237149.C900_00706 5.883e-35 142.0 COG0323@1|root,COG0323@2|Bacteria,4NDWJ@976|Bacteroidetes,47KZU@768503|Cytophagia 976|Bacteroidetes L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C DYD3_k127_576314_2 700598.Niako_6639 5.047e-93 307.0 COG1595@1|root,COG1595@2|Bacteria,4NP5U@976|Bacteroidetes,1IS8X@117747|Sphingobacteriia 976|Bacteroidetes K RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_576314_1 700598.Niako_6638 7.695e-174 557.0 COG2027@1|root,COG2027@2|Bacteria,4NGIQ@976|Bacteroidetes,1INKX@117747|Sphingobacteriia 976|Bacteroidetes M PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C dacB - 3.4.16.4 ko:K07259 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Peptidase_S13 DYD3_k127_576314_0 700598.Niako_6637 1.811e-190 600.0 COG0010@1|root,COG0010@2|Bacteria,4NE5W@976|Bacteroidetes,1IQD9@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the arginase family - - 3.5.3.8 ko:K01479 ko00340,ko01100,map00340,map01100 M00045 R02285 RC00221,RC00681 ko00000,ko00001,ko00002,ko01000 - - - Arginase DYD3_k127_5767399_0 1121957.ATVL01000007_gene2078 1.758e-123 399.0 COG3507@1|root,COG3507@2|Bacteria,4NFU3@976|Bacteroidetes,47NII@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 43 family - - 3.2.1.99 ko:K06113 - - - - ko00000,ko01000 - GH43 - Glyco_hydro_43,RicinB_lectin_2 DYD3_k127_5767399_1 1121481.AUAS01000020_gene5215 5.642e-62 226.0 COG2972@1|root,COG2972@2|Bacteria,4NFDP@976|Bacteroidetes,47N4N@768503|Cytophagia 976|Bacteroidetes T PFAM histidine kinase internal region - - - - - - - - - - - - His_kinase DYD3_k127_5767399_2 620914.JH621249_gene3251 0.0003405 46.0 2EAY9@1|root,334Z9@2|Bacteria,4NV3Y@976|Bacteroidetes,1I5AJ@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5768795_0 1123278.KB893563_gene4560 0.0 1149.0 2DB7A@1|root,2Z7KK@2|Bacteria,4NGC2@976|Bacteroidetes,47KVX@768503|Cytophagia 976|Bacteroidetes S Glycosyl hydrolase family 115 - - - - - - - - - - - - Glyco_hydro_115,Glyco_hydro_67N DYD3_k127_5782864_1 485918.Cpin_3714 1.931e-25 113.0 COG4099@1|root,COG4932@1|root,COG4099@2|Bacteria,COG4932@2|Bacteria,4NP7H@976|Bacteroidetes 976|Bacteroidetes M Fibronectin type 3 domain - - - - - - - - - - - - - DYD3_k127_5782864_0 700598.Niako_3560 0.0 1034.0 COG1529@1|root,COG1529@2|Bacteria,4NFFU@976|Bacteroidetes,1IPWF@117747|Sphingobacteriia 976|Bacteroidetes C COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs - - 1.3.99.16 ko:K07303 - - - - ko00000,ko01000 - - - Ald_Xan_dh_C2 DYD3_k127_5787375_0 700598.Niako_5539 6.403e-192 613.0 COG2931@1|root,COG2931@2|Bacteria 2|Bacteria Q calcium- and calmodulin-responsive adenylate cyclase activity - - 3.4.24.40 ko:K01406 ko01503,map01503 - - - ko00000,ko00001,ko01000,ko01002 - - - 5_nucleotid_C,HemolysinCabind,Laminin_G_3,VCBS DYD3_k127_5787375_3 700598.Niako_5540 5.075e-91 300.0 COG1978@1|root,COG1978@2|Bacteria,4NNSE@976|Bacteroidetes,1IS2T@117747|Sphingobacteriia 976|Bacteroidetes S Ribonuclease H-like - - - ko:K09776 - - - - ko00000 - - - RNaseH_like DYD3_k127_5787375_2 485918.Cpin_7093 3.082e-95 315.0 COG0218@1|root,COG0218@2|Bacteria,4NEA9@976|Bacteroidetes,1ISQ4@117747|Sphingobacteriia 976|Bacteroidetes D Necessary for normal cell division and for the maintenance of normal septation engB GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - ko:K03978 - - - - ko00000,ko03036 - - - MMR_HSR1 DYD3_k127_5787375_4 1236514.BAKL01000030_gene2645 3.727e-55 203.0 COG0500@1|root,COG2226@2|Bacteria,4NEDR@976|Bacteroidetes,2FMI3@200643|Bacteroidia,4AKW0@815|Bacteroidaceae 976|Bacteroidetes H Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) menG - 2.1.1.163,2.1.1.201 ko:K03183 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116,M00117 R04990,R04993,R06859,R08774,R09736 RC00003,RC01253,RC01662 ko00000,ko00001,ko00002,ko01000 - - - Ubie_methyltran DYD3_k127_5787375_1 700598.Niako_5543 2.007e-130 419.0 2C52N@1|root,2Z7U1@2|Bacteria,4NEZW@976|Bacteroidetes,1ISMS@117747|Sphingobacteriia 976|Bacteroidetes S Outer membrane protein beta-barrel domain porT - - - - - - - - - - - OMP_b-brl_2 DYD3_k127_5809361_3 760192.Halhy_2039 0.0005955 49.0 COG2931@1|root,COG3227@1|root,COG3292@1|root,COG2931@2|Bacteria,COG3227@2|Bacteria,COG3292@2|Bacteria,4NHTI@976|Bacteroidetes 976|Bacteroidetes T zinc metalloprotease - - - - - - - - - - - - CUB,Pep_M12B_propep,Reprolysin_5 DYD3_k127_5809361_0 700598.Niako_0416 9.968e-160 507.0 COG4974@1|root,COG4974@2|Bacteria,4NE0E@976|Bacteroidetes,1IP1B@117747|Sphingobacteriia 976|Bacteroidetes L Tyrosine recombinase XerC xerC - - ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase DYD3_k127_5809361_1 700598.Niako_0417 2.728e-78 264.0 COG0727@1|root,COG0727@2|Bacteria,4NJH9@976|Bacteroidetes,1ITJ5@117747|Sphingobacteriia 976|Bacteroidetes S Putative zinc- or iron-chelating domain - - - ko:K06940 - - - - ko00000 - - - CxxCxxCC DYD3_k127_5809361_2 700598.Niako_0418 1.378e-38 147.0 COG0792@1|root,COG0792@2|Bacteria,4NS7E@976|Bacteroidetes,1ITWJ@117747|Sphingobacteriia 976|Bacteroidetes L Belongs to the UPF0102 family - - - ko:K07460 - - - - ko00000 - - - UPF0102 DYD3_k127_5811531_0 700598.Niako_6091 4.058e-116 384.0 COG0707@1|root,COG0707@2|Bacteria,4NFRJ@976|Bacteroidetes,1IX57@117747|Sphingobacteriia 976|Bacteroidetes M Glycosyl transferase family 1 - - - - - - - - - - - - Glyco_tran_28_C,Glyco_trans_1_3 DYD3_k127_583777_1 700598.Niako_7045 3.701e-128 418.0 COG1187@1|root,COG3064@1|root,COG1187@2|Bacteria,COG3064@2|Bacteria,4NEE1@976|Bacteroidetes,1INNI@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the pseudouridine synthase RsuA family rluB - 5.4.99.22 ko:K06178 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 DYD3_k127_583777_2 700598.Niako_7044 1.043e-107 353.0 COG0564@1|root,COG0564@2|Bacteria,4NHKH@976|Bacteroidetes,1IQTT@117747|Sphingobacteriia 976|Bacteroidetes J Pseudouridine synthase - - 5.4.99.23,5.4.99.24 ko:K06179,ko:K06180 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2 DYD3_k127_583777_0 1123248.KB893343_gene5 3.801e-167 531.0 COG4206@1|root,COG4206@2|Bacteria,4PKCR@976|Bacteroidetes,1J0WU@117747|Sphingobacteriia 976|Bacteroidetes H TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_5853934_1 1123248.KB893381_gene1093 7.669e-66 231.0 28NAE@1|root,2ZBE7@2|Bacteria,4NJNX@976|Bacteroidetes,1IS37@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (Porph_ging) - - - - - - - - - - - - Porph_ging DYD3_k127_5853934_0 700598.Niako_2147 3.601e-282 878.0 COG0366@1|root,COG0366@2|Bacteria,4NHT1@976|Bacteroidetes,1IQWD@117747|Sphingobacteriia 976|Bacteroidetes G Cyclomaltodextrinase, N-terminal - - 3.2.1.135 ko:K21575 - - - - ko00000,ko01000 - GH13 - Alpha-amylase,Cyc-maltodext_C,Cyc-maltodext_N DYD3_k127_5870706_0 485918.Cpin_2668 1.999e-212 677.0 COG1277@1|root,COG3225@1|root,COG1277@2|Bacteria,COG3225@2|Bacteria,4NHD6@976|Bacteroidetes,1IQQ9@117747|Sphingobacteriia 976|Bacteroidetes N ABC-type uncharacterized transport system - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC_transp_aux DYD3_k127_5870706_3 1042376.AFPK01000005_gene2511 1.161e-11 66.0 COG1277@1|root,COG3225@1|root,COG1277@2|Bacteria,COG3225@2|Bacteria,4NHD6@976|Bacteroidetes,1I7P5@117743|Flavobacteriia 976|Bacteroidetes N ABC-type uncharacterized transport system - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC_transp_aux DYD3_k127_5870706_1 391596.PBAL39_22575 2.993e-139 448.0 COG1131@1|root,COG1131@2|Bacteria,4NEH0@976|Bacteroidetes 976|Bacteroidetes V Gliding motility-associated ABC transporter ATP-binding subunit GldA - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_5870706_2 391596.PBAL39_20299 5.592e-98 332.0 COG3193@1|root,COG3193@2|Bacteria 2|Bacteria - - - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_5879817_5 929562.Emtol_2348 4.487e-25 107.0 COG0308@1|root,COG0308@2|Bacteria,4NGUB@976|Bacteroidetes,47K4K@768503|Cytophagia 976|Bacteroidetes E Peptidase M1, membrane alanine aminopeptidase - - - - - - - - - - - - Peptidase_M1 DYD3_k127_5879817_2 1121904.ARBP01000001_gene5953 3.672e-34 138.0 COG3631@1|root,COG3631@2|Bacteria,4NVNP@976|Bacteroidetes,47SCI@768503|Cytophagia 976|Bacteroidetes S Ketosteroid isomerase-related protein - - - - - - - - - - - - SnoaL_2 DYD3_k127_5879817_3 382464.ABSI01000016_gene745 3.223e-32 131.0 COG2259@1|root,COG2259@2|Bacteria,46T2M@74201|Verrucomicrobia,2IUPP@203494|Verrucomicrobiae 203494|Verrucomicrobiae S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX DYD3_k127_5879817_1 700598.Niako_1150 6.061e-81 274.0 COG3637@1|root,COG3637@2|Bacteria,4NWNN@976|Bacteroidetes 976|Bacteroidetes M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl,OMP_b-brl_2 DYD3_k127_5879817_4 929713.NIASO_16325 3.872e-32 128.0 COG3279@1|root,COG3279@2|Bacteria,4NFN4@976|Bacteroidetes 976|Bacteroidetes KT Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_5893203_4 1122605.KB893637_gene3226 2.185e-61 216.0 COG0667@1|root,COG0667@2|Bacteria,4NK8K@976|Bacteroidetes,1IWE1@117747|Sphingobacteriia 976|Bacteroidetes C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD3_k127_5893203_1 1121012.AUKX01000038_gene3742 1.843e-135 437.0 COG0673@1|root,COG0673@2|Bacteria,4NK71@976|Bacteroidetes,1I9AX@117743|Flavobacteriia 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_5893203_2 1122605.KB893637_gene3228 1.132e-118 386.0 COG1028@1|root,COG1028@2|Bacteria,4NJK5@976|Bacteroidetes,1ITT3@117747|Sphingobacteriia 976|Bacteroidetes IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 DYD3_k127_5893203_0 1122605.KB893637_gene3251 2.7e-168 537.0 COG2271@1|root,COG2271@2|Bacteria,4NFKX@976|Bacteroidetes,1IRSA@117747|Sphingobacteriia 976|Bacteroidetes G Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD3_k127_5893203_3 1122605.KB893637_gene3219 9.497e-108 354.0 COG1028@1|root,COG1028@2|Bacteria,4NJK5@976|Bacteroidetes,1ITT3@117747|Sphingobacteriia 976|Bacteroidetes IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 DYD3_k127_5911067_3 485918.Cpin_6060 6.802e-41 156.0 COG3279@1|root,COG3279@2|Bacteria,4NIXT@976|Bacteroidetes,1ISN5@117747|Sphingobacteriia 976|Bacteroidetes K Two component transcriptional regulator, LytTR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_5911067_1 391596.PBAL39_25260 6.473e-109 361.0 COG0346@1|root,COG0346@2|Bacteria,4NGE0@976|Bacteroidetes,1IR0X@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - ko:K15975 - - - - ko00000 - - - Glyoxalase DYD3_k127_5911067_2 700598.Niako_0787 4.25e-73 258.0 COG0662@1|root,COG2207@1|root,COG0662@2|Bacteria,COG2207@2|Bacteria,4NJNH@976|Bacteroidetes,1J040@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator, AraC family - - - - - - - - - - - - AraC_binding,HTH_18 DYD3_k127_5911067_0 1185876.BN8_03415 1.617e-141 460.0 COG2204@1|root,COG3829@1|root,COG2204@2|Bacteria,COG3829@2|Bacteria,4NE89@976|Bacteroidetes,47JRM@768503|Cytophagia 976|Bacteroidetes T sigma54 specific, transcriptional regulator, Fis family - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat DYD3_k127_5921914_1 1123248.KB893332_gene2278 6.625e-80 274.0 COG0477@1|root,COG0477@2|Bacteria,4PKN6@976|Bacteroidetes,1J0M5@117747|Sphingobacteriia 976|Bacteroidetes EGP PFAM Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD3_k127_5921914_3 1121936.AUHI01000001_gene921 6.179e-25 104.0 COG0202@1|root,COG0202@2|Bacteria,1VD02@1239|Firmicutes,4HKNS@91061|Bacilli 91061|Bacilli K COG0202 DNA-directed RNA polymerase, alpha subunit 40 kD subunit - - - - - - - - - - - - RNA_pol_A_CTD DYD3_k127_5921914_0 926549.KI421517_gene3169 1.988e-91 303.0 COG0110@1|root,COG0110@2|Bacteria,4NNWE@976|Bacteroidetes,47KBH@768503|Cytophagia 976|Bacteroidetes S Maltose acetyltransferase maa - 2.3.1.79 ko:K00661 - - - - ko00000,ko01000 - - - Hexapep,Hexapep_2,Mac DYD3_k127_5921914_2 525373.HMPREF0766_12348 1.507e-56 200.0 COG0454@1|root,COG0456@2|Bacteria,4NRS3@976|Bacteroidetes,1IXTI@117747|Sphingobacteriia 976|Bacteroidetes K Acetyltransferase, gnat family - - - - - - - - - - - - Acetyltransf_10 DYD3_k127_592202_1 700598.Niako_3644 1.515e-130 424.0 COG3664@1|root,COG3664@2|Bacteria,4NHQ0@976|Bacteroidetes,1INQN@117747|Sphingobacteriia 976|Bacteroidetes G PFAM glycoside hydrolase family 39 - - 3.2.1.37 ko:K01198 ko00520,ko01100,map00520,map01100 - R01433 RC00467 ko00000,ko00001,ko01000 - GH43 - Glyco_hydro_39 DYD3_k127_592202_0 700598.Niako_3645 1.149e-148 476.0 COG3940@1|root,COG3940@2|Bacteria,4PMI7@976|Bacteroidetes,1IPWU@117747|Sphingobacteriia 976|Bacteroidetes G SPTR Beta-galactosidase I - - - - - - - - - - - - Glyco_hydro_43 DYD3_k127_5929012_0 700598.Niako_0123 0.0 1683.0 COG0178@1|root,COG0178@2|Bacteria,4NFQU@976|Bacteroidetes,1INYW@117747|Sphingobacteriia 976|Bacteroidetes L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran DYD3_k127_5929012_1 485918.Cpin_6492 1.131e-87 306.0 COG1503@1|root,COG1503@2|Bacteria,4NHJS@976|Bacteroidetes,1IV4A@117747|Sphingobacteriia 976|Bacteroidetes J translation release factor activity - - - - - - - - - - - - - DYD3_k127_5929012_2 700598.Niako_5289 4.144e-71 245.0 COG3685@1|root,COG3685@2|Bacteria,4NN8V@976|Bacteroidetes,1IRV4@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF892) - - - - - - - - - - - - DUF892 DYD3_k127_5929318_4 700598.Niako_7332 9.76e-17 79.0 COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,4NF9D@976|Bacteroidetes,1IPN0@117747|Sphingobacteriia 976|Bacteroidetes I 3-hydroxyacyl-CoA dehydrogenase fadN - 1.1.1.35 ko:K07516 ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212 M00087 R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000 - - - 3HCDH,3HCDH_N,ECH_1 DYD3_k127_5929318_2 700598.Niako_7331 2.772e-92 307.0 2B2WA@1|root,31VGV@2|Bacteria,4NRR4@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5929318_0 700598.Niako_7330 1.201e-148 475.0 COG1131@1|root,COG1131@2|Bacteria,4NFNM@976|Bacteroidetes,1IVCP@117747|Sphingobacteriia 976|Bacteroidetes V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_5929318_3 700598.Niako_7329 9.775e-74 256.0 COG1277@1|root,COG1277@2|Bacteria,4NEES@976|Bacteroidetes,1IZB2@117747|Sphingobacteriia 976|Bacteroidetes S ABC-2 family transporter protein - - - - - - - - - - - - ABC2_membrane_2,ABC2_membrane_4 DYD3_k127_5929318_1 1123248.KB893386_gene1980 1.706e-105 350.0 COG1090@1|root,COG1090@2|Bacteria,4NINM@976|Bacteroidetes,1IQB7@117747|Sphingobacteriia 976|Bacteroidetes S PFAM NAD dependent epimerase dehydratase family - - - ko:K07071 - - - - ko00000 - - - DUF1731,Epimerase DYD3_k127_5929318_5 1406840.Q763_00525 5.87e-10 65.0 COG4886@1|root,COG4886@2|Bacteria,4NFXV@976|Bacteroidetes,1I00F@117743|Flavobacteriia,2NT0J@237|Flavobacterium 976|Bacteroidetes S Pkd domain containing protein - - - - - - - - - - - - PKD DYD3_k127_5940765_1 700598.Niako_0743 3.72e-240 753.0 COG1554@1|root,COG1554@2|Bacteria,4NFYU@976|Bacteroidetes,1IQHD@117747|Sphingobacteriia 976|Bacteroidetes G hydrolase, family 65, central catalytic - - - - - - - - - - - - - DYD3_k127_5940765_0 700598.Niako_0744 0.0 1163.0 COG3408@1|root,COG3408@2|Bacteria,4NE1I@976|Bacteroidetes,1IRGN@117747|Sphingobacteriia 976|Bacteroidetes G Domain of unknown function (DUF4450) - - - - - - - - - - - - Bac_rhamnosid6H,DUF4450,DUF608 DYD3_k127_5942701_2 761193.Runsl_0088 2.803e-179 565.0 COG3669@1|root,COG4409@1|root,COG4692@1|root,COG3669@2|Bacteria,COG4409@2|Bacteria,COG4692@2|Bacteria,4NEDX@976|Bacteroidetes,47JNA@768503|Cytophagia 976|Bacteroidetes G Coagulation factor 5 8 type domain protein - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,CHB_HEX_C_1,F5_F8_type_C,Fn3_assoc DYD3_k127_5942701_0 1358423.N180_18575 0.0 1052.0 COG3537@1|root,COG3537@2|Bacteria,4NDYB@976|Bacteroidetes,1IQPI@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-1,2-mannosidase - - - - - - - - - - - - Glyco_hydro_92 DYD3_k127_5942701_1 504472.Slin_3037 0.0 1033.0 COG1506@1|root,COG1506@2|Bacteria,4NGAW@976|Bacteroidetes,47NN5@768503|Cytophagia 976|Bacteroidetes E Putative esterase - - - - - - - - - - - - Esterase,Esterase_phd,Peptidase_S9 DYD3_k127_5953707_3 700598.Niako_5692 6.09e-34 131.0 COG0078@1|root,COG0078@2|Bacteria,4NEYX@976|Bacteroidetes,1IQ2H@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the ATCase OTCase family argF GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.11,2.1.3.9 ko:K09065,ko:K13043 ko00220,ko01100,ko01230,map00220,map01100,map01230 M00845 R07245,R08937 RC00096 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N DYD3_k127_5953707_2 1267211.KI669560_gene76 3.06e-102 338.0 COG0548@1|root,COG0548@2|Bacteria,4NDY8@976|Bacteroidetes,1IPBE@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the acetylglutamate kinase family. ArgB subfamily argB GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 ko:K00930 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R02649 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase DYD3_k127_5953707_1 700598.Niako_5694 1.198e-179 567.0 COG0624@1|root,COG0624@2|Bacteria,4NE2G@976|Bacteroidetes,1IQBT@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Peptidase family M20 M25 M40 argE - 3.5.1.16 ko:K01438 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R00669,R09107 RC00064,RC00300 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20,Peptidase_M28 DYD3_k127_5953707_5 583355.Caka_1765 1.775e-09 61.0 29Q4T@1|root,334S3@2|Bacteria 2|Bacteria J 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP DYD3_k127_5953707_0 700598.Niako_5695 5.744e-228 711.0 COG0165@1|root,COG0165@2|Bacteria,4NFCY@976|Bacteroidetes,1INUE@117747|Sphingobacteriia 976|Bacteroidetes E argininosuccinate lyase argH GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 ko:K01755 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230 M00029,M00844,M00845 R01086 RC00445,RC00447 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Lyase_1 DYD3_k127_5953707_4 1123248.KB893348_gene293 8.954e-31 128.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NK8Q@976|Bacteroidetes 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HTH_18,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_5954774_1 886377.Murru_2871 1.326e-138 445.0 COG0667@1|root,COG0667@2|Bacteria,4NEDK@976|Bacteroidetes,1HY7T@117743|Flavobacteriia 976|Bacteroidetes C aldo keto reductase - - - - - - - - - - - - Aldo_ket_red DYD3_k127_5954774_2 700598.Niako_0012 3.962e-77 262.0 COG3685@1|root,COG3685@2|Bacteria,4NMCT@976|Bacteroidetes,1IY39@117747|Sphingobacteriia 976|Bacteroidetes S InterPro IPR010287 - - - - - - - - - - - - DUF892 DYD3_k127_5954774_0 1229276.DI53_3611 1.265e-160 510.0 COG3546@1|root,COG3546@2|Bacteria,4NHIN@976|Bacteroidetes 976|Bacteroidetes P Manganese containing catalase - - - - - - - - - - - - Mn_catalase DYD3_k127_5957654_0 1450525.JATV01000016_gene2957 1.561e-141 466.0 COG1858@1|root,COG1858@2|Bacteria,4NE50@976|Bacteroidetes,1HYE7@117743|Flavobacteriia,2NS7S@237|Flavobacterium 976|Bacteroidetes C cytochrome c peroxidase - - 1.11.1.5 ko:K00428 - - - - ko00000,ko01000 - - - CCP_MauG,Cytochrom_C DYD3_k127_5974271_2 755732.Fluta_0540 1.032e-21 109.0 COG4935@1|root,COG4935@2|Bacteria,4PI04@976|Bacteroidetes,1IG77@117743|Flavobacteriia,2PBN7@246874|Cryomorphaceae 976|Bacteroidetes O Belongs to the peptidase S8 family - - - - - - - - - - - - - DYD3_k127_5974271_3 1279009.ADICEAN_04080 0.0001956 53.0 COG3291@1|root,COG3291@2|Bacteria,4NFCW@976|Bacteroidetes,47KMB@768503|Cytophagia 976|Bacteroidetes M C-terminal domain of CHU protein family - - - - - - - - - - - - CHU_C DYD3_k127_5974271_0 468059.AUHA01000003_gene1746 1.03e-99 332.0 COG1235@1|root,COG1235@2|Bacteria,4NDVI@976|Bacteroidetes,1IR6D@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I vicX - - - - - - - - - - - Lactamase_B,Lactamase_B_2 DYD3_k127_5974271_1 1444712.BN1013_00395 7.642e-82 280.0 COG0667@1|root,COG0667@2|Bacteria,2JGMF@204428|Chlamydiae 204428|Chlamydiae C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD3_k127_5976340_3 468059.AUHA01000006_gene2903 5.8e-105 347.0 COG0738@1|root,COG0738@2|Bacteria,4NEYR@976|Bacteroidetes,1IPM2@117747|Sphingobacteriia 976|Bacteroidetes G COG0738 Fucose permease - - - ko:K02429 - - - - ko00000,ko02000 2.A.1.7 - - MFS_1 DYD3_k127_5976340_1 1267211.KI669560_gene1437 6.91e-158 503.0 COG1940@1|root,COG1940@2|Bacteria,4NFZ1@976|Bacteroidetes,1IWBC@117747|Sphingobacteriia 976|Bacteroidetes GK ROK family glk - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - ROK DYD3_k127_5976340_2 700598.Niako_2153 2.056e-127 415.0 COG4632@1|root,COG4632@2|Bacteria,4NR1M@976|Bacteroidetes,1ITPU@117747|Sphingobacteriia 976|Bacteroidetes G COGs COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase - - - - - - - - - - - - Metallophos,NAGPA,fn3 DYD3_k127_5976340_0 700598.Niako_2154 1.421e-174 551.0 COG0320@1|root,COG0320@2|Bacteria,4NEB5@976|Bacteroidetes,1IQJG@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives lipA - 2.8.1.8 ko:K03644 ko00785,ko01100,map00785,map01100 - R07767,R07768 RC01978 ko00000,ko00001,ko01000 - - - LIAS_N,Radical_SAM DYD3_k127_5976340_4 700598.Niako_2155 8.237e-47 170.0 28MPU@1|root,2ZAYW@2|Bacteria,4NXA9@976|Bacteroidetes,1IYAK@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5976770_3 391587.KAOT1_05842 1.257e-42 174.0 COG4676@1|root,COG4886@1|root,COG4676@2|Bacteria,COG4886@2|Bacteria,4NR6Y@976|Bacteroidetes,1I2WF@117743|Flavobacteriia 976|Bacteroidetes S PFAM Receptor L domain - - - - - - - - - - - - Recep_L_domain DYD3_k127_5976770_1 929703.KE386491_gene145 8.166e-77 266.0 COG0671@1|root,COG0671@2|Bacteria,4NR78@976|Bacteroidetes,47QF8@768503|Cytophagia 976|Bacteroidetes I PAP2 superfamily - - - - - - - - - - - - PAP2 DYD3_k127_5976770_2 700598.Niako_3000 1.669e-72 250.0 COG0671@1|root,COG0671@2|Bacteria,4NQ5M@976|Bacteroidetes,1J0DT@117747|Sphingobacteriia 976|Bacteroidetes I SMART Phosphatidic acid phosphatase type 2 haloperoxidase - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 DYD3_k127_5976770_0 1185876.BN8_02240 3.217e-98 336.0 COG0671@1|root,COG0671@2|Bacteria,4NF9W@976|Bacteroidetes,47M2K@768503|Cytophagia 976|Bacteroidetes I PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - - - - - - - - - - PAP2 DYD3_k127_5980152_0 760192.Halhy_4068 1.81e-77 285.0 COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1IT68@117747|Sphingobacteriia 976|Bacteroidetes T PFAM histidine kinase - - - - - - - - - - - - HATPase_c,HATPase_c_2,HisKA_2,TPR_10,TPR_12,TPR_8 DYD3_k127_5980152_1 760192.Halhy_4069 3.103e-76 261.0 COG2197@1|root,COG2197@2|Bacteria,4NUSF@976|Bacteroidetes 976|Bacteroidetes K COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_5980152_2 504487.JCM19302_1798 3.667e-16 91.0 COG0457@1|root,COG4585@1|root,COG0457@2|Bacteria,COG4585@2|Bacteria,4NI1V@976|Bacteroidetes,1HWSH@117743|Flavobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_12,TPR_8 DYD3_k127_5982229_1 700598.Niako_0373 1.33e-25 106.0 COG0739@1|root,COG0739@2|Bacteria,4NFZN@976|Bacteroidetes,1IT7G@117747|Sphingobacteriia 976|Bacteroidetes M peptidase M23 nlpD_1 - - - - - - - - - - - Peptidase_M23 DYD3_k127_5982229_0 700598.Niako_0372 0.0 1038.0 COG0457@1|root,COG1729@1|root,COG3147@1|root,COG0457@2|Bacteria,COG1729@2|Bacteria,COG3147@2|Bacteria,4NDV9@976|Bacteroidetes,1IQQP@117747|Sphingobacteriia 976|Bacteroidetes S Tetratricopeptide repeat protein sprE - - - - - - - - - - - TPR_16,TPR_6,TPR_8 DYD3_k127_5983315_0 452637.Oter_3218 1.516e-239 747.0 COG3669@1|root,COG3669@2|Bacteria 2|Bacteria G Alpha-L-fucosidase - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,Fucosidase_C,RicinB_lectin_2 DYD3_k127_5983315_1 760192.Halhy_6458 5.702e-135 440.0 COG0296@1|root,COG2382@1|root,COG0296@2|Bacteria,COG2382@2|Bacteria,4NF50@976|Bacteroidetes,1IP0P@117747|Sphingobacteriia 976|Bacteroidetes P InterPro IPR005181 - - - ko:K07214 - - - - ko00000 - - - CBM_6,Esterase,Glyco_hydro_43,SASA DYD3_k127_5983315_2 925409.KI911562_gene531 1.544e-67 230.0 COG2382@1|root,COG2382@2|Bacteria,4NF50@976|Bacteroidetes,1IPKM@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG2382 Enterochelin esterase - - - ko:K07214 - - - - ko00000 - - - Esterase,SASA DYD3_k127_5991667_0 314278.NB231_13636 3.538e-182 584.0 2DUQG@1|root,33RR5@2|Bacteria 2|Bacteria S HCO3- transporter family - - - - - - - - - - - - HCO3_cotransp DYD3_k127_5991667_2 468059.AUHA01000004_gene2307 7.844e-36 147.0 COG0589@1|root,COG0589@2|Bacteria,4NQ14@976|Bacteroidetes,1ITD0@117747|Sphingobacteriia 976|Bacteroidetes T UspA domain-containing protein - - - - - - - - - - - - Usp DYD3_k127_5991667_1 700598.Niako_6657 3.511e-119 384.0 COG0288@1|root,COG0288@2|Bacteria,4NEJT@976|Bacteroidetes,1IQ7Q@117747|Sphingobacteriia 976|Bacteroidetes P Reversible hydration of carbon dioxide - - 4.2.1.1 ko:K01673 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Pro_CA DYD3_k127_5993089_0 1123277.KB893217_gene4616 1e-166 535.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,47K5R@768503|Cytophagia 976|Bacteroidetes P TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_5993089_1 1298858.AUEL01000007_gene2249 9.315e-76 256.0 COG0251@1|root,COG0251@2|Bacteria,1NU08@1224|Proteobacteria,2UR3P@28211|Alphaproteobacteria 28211|Alphaproteobacteria J Endoribonuclease L-PSP - - - - - - - - - - - - Ribonuc_L-PSP DYD3_k127_5995804_1 1123248.KB893348_gene371 2.553e-277 866.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IUUN@117747|Sphingobacteriia 976|Bacteroidetes S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_5995804_2 1123248.KB893362_gene4498 1.177e-57 206.0 2BTVE@1|root,32P38@2|Bacteria,4NRR1@976|Bacteroidetes,1IYY8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_5995804_0 760192.Halhy_1517 0.0 1194.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IUUN@117747|Sphingobacteriia 976|Bacteroidetes S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_6000235_1 471854.Dfer_1279 1.114e-68 236.0 COG3279@1|root,COG3279@2|Bacteria,4NFPV@976|Bacteroidetes,47PTI@768503|Cytophagia 976|Bacteroidetes T Response regulator of the LytR AlgR family - - - ko:K02477 - - - - ko00000,ko02022 - - - LytTR,Response_reg DYD3_k127_6000235_0 471854.Dfer_1503 2.846e-115 384.0 COG1956@1|root,COG2972@1|root,COG3292@1|root,COG1956@2|Bacteria,COG2972@2|Bacteria,COG3292@2|Bacteria,4NHMQ@976|Bacteroidetes,47P3A@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,His_kinase,Reg_prop,Y_Y_Y DYD3_k127_6001996_2 700598.Niako_6097 2.94e-107 352.0 COG0760@1|root,COG0760@2|Bacteria,4NEW0@976|Bacteroidetes,1IQB4@117747|Sphingobacteriia 976|Bacteroidetes O peptidylprolyl isomerase surA - 5.2.1.8 ko:K03771 - - - - ko00000,ko01000,ko03110 - - - Rotamase,SurA_N_3 DYD3_k127_6001996_4 42256.RradSPS_2663 3.425e-40 174.0 COG2202@1|root,COG2204@1|root,COG4585@1|root,COG2202@2|Bacteria,COG2204@2|Bacteria,COG4585@2|Bacteria,2GIXR@201174|Actinobacteria,4CT8E@84995|Rubrobacteria 84995|Rubrobacteria T Histidine kinase - - - - - - - - - - - - GAF,HATPase_c,HisKA_3,PAS_3,PAS_4,PAS_9,Response_reg DYD3_k127_6001996_3 468059.AUHA01000002_gene57 1.501e-97 361.0 COG0745@1|root,COG2202@1|root,COG2203@1|root,COG5002@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG5002@2|Bacteria,4P5EA@976|Bacteroidetes 976|Bacteroidetes T TIGRFAM PAS domain S-box - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,HisKA_7TM,PAS,PAS_3,PAS_4,PAS_9 DYD3_k127_6001996_1 700598.Niako_6095 1.45e-121 391.0 COG2197@1|root,COG2197@2|Bacteria,4NKX7@976|Bacteroidetes 976|Bacteroidetes K COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_6001996_0 700598.Niako_6094 2.68e-321 989.0 COG0034@1|root,COG0034@2|Bacteria,4NFSM@976|Bacteroidetes,1INR4@117747|Sphingobacteriia 976|Bacteroidetes F Amidophosphoribosyltransferase purF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_7 DYD3_k127_6006820_1 1123277.KB893180_gene2493 5.295e-33 141.0 2DEAW@1|root,2ZM71@2|Bacteria,4P76M@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6006820_0 684949.ATTJ01000001_gene496 1.997e-81 287.0 2F7K7@1|root,3400T@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_6006820_2 1250232.JQNJ01000001_gene1523 3.04e-21 104.0 COG4733@1|root,COG4733@2|Bacteria,4P8KX@976|Bacteroidetes,1IB3K@117743|Flavobacteriia 976|Bacteroidetes S cellulase activity - - - - - - - - - - - - - DYD3_k127_6006820_4 1124780.ANNU01000069_gene1087 0.00073 44.0 COG0596@1|root,COG0596@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds pip - 3.4.11.5 ko:K01259 ko00330,map00330 - R00135 - ko00000,ko00001,ko01000,ko01002 - - - Abhydrolase_1 DYD3_k127_6019394_6 1121007.AUML01000021_gene906 7.573e-59 206.0 COG0664@1|root,COG0664@2|Bacteria,4NMDG@976|Bacteroidetes,1I1HM@117743|Flavobacteriia,2YHTF@290174|Aquimarina 976|Bacteroidetes T cyclic nucleotide-binding - - - - - - - - - - - - cNMP_binding DYD3_k127_6019394_7 468059.AUHA01000002_gene1353 4.186e-53 188.0 COG2076@1|root,COG2076@2|Bacteria,4NQ4U@976|Bacteroidetes,1IT3B@117747|Sphingobacteriia 976|Bacteroidetes P Small Multidrug Resistance protein sugE - - ko:K11741 - - - - ko00000,ko02000 2.A.7.1 - - Multi_Drug_Res DYD3_k127_6019394_1 700598.Niako_6993 1.491e-312 962.0 COG1262@1|root,COG1262@2|Bacteria,4NE51@976|Bacteroidetes,1IQK8@117747|Sphingobacteriia 976|Bacteroidetes S gliding motility-associated lipoprotein GldJ gldJ - - - - - - - - - - - FGE-sulfatase DYD3_k127_6019394_0 700598.Niako_6994 0.0 1544.0 COG1572@1|root,COG1572@2|Bacteria,4NDY7@976|Bacteroidetes,1IW9T@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase family C25 porU - - - - - - - - - - - Peptidase_C25 DYD3_k127_6019394_2 700598.Niako_6995 3.743e-191 603.0 COG3637@1|root,COG3637@2|Bacteria,4PKVN@976|Bacteroidetes,1J0KY@117747|Sphingobacteriia 976|Bacteroidetes M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - - DYD3_k127_6019394_4 700598.Niako_6996 5.318e-79 265.0 COG0245@1|root,COG0245@2|Bacteria,4NP0N@976|Bacteroidetes,1IS13@117747|Sphingobacteriia 976|Bacteroidetes I Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) ispF - 4.6.1.12 ko:K01770 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05637 RC00002,RC01440 ko00000,ko00001,ko00002,ko01000 - - - YgbB DYD3_k127_6019394_5 700598.Niako_6997 3.521e-72 247.0 COG0756@1|root,COG0756@2|Bacteria,4NNI4@976|Bacteroidetes,1ISB8@117747|Sphingobacteriia 976|Bacteroidetes F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA dut GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 ko:K01520 ko00240,ko00983,ko01100,map00240,map00983,map01100 M00053 R02100,R11896 RC00002 ko00000,ko00001,ko00002,ko01000,ko03400 - - - dUTPase DYD3_k127_6019394_3 700598.Niako_6998 5.543e-99 329.0 COG2834@1|root,COG2834@2|Bacteria,4NFYQ@976|Bacteroidetes,1ITXE@117747|Sphingobacteriia 976|Bacteroidetes M Domain of unknown function (DUF4292) - - - - - - - - - - - - DUF4292 DYD3_k127_6020210_2 1123248.KB893331_gene3783 9.174e-110 366.0 COG1649@1|root,COG1649@2|Bacteria,4NFKQ@976|Bacteroidetes,1IP9B@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Uncharacterised BCR, COG1649 - - - - - - - - - - - - GHL10 DYD3_k127_6020210_1 700598.Niako_6241 1.146e-204 642.0 COG0399@1|root,COG0399@2|Bacteria,4NG9W@976|Bacteroidetes 976|Bacteroidetes E Belongs to the DegT DnrJ EryC1 family - - 2.6.1.109 ko:K19715 - - R11395 RC00160 ko00000,ko01000,ko01005 - - - DegT_DnrJ_EryC1 DYD3_k127_6020210_0 700598.Niako_6238 6.221e-232 722.0 COG1508@1|root,COG1508@2|Bacteria,4NE5B@976|Bacteroidetes,1IQIK@117747|Sphingobacteriia 976|Bacteroidetes K RNA polymerase, sigma-54 factor rpoN - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD DYD3_k127_602249_3 504472.Slin_4639 5.977e-104 358.0 COG0577@1|root,COG0577@2|Bacteria,4NDW7@976|Bacteroidetes,47N35@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_602249_1 700598.Niako_1200 1.126e-123 398.0 COG1136@1|root,COG1136@2|Bacteria,4NEC5@976|Bacteroidetes,1IQ7K@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter - - - - - - - - - - - - ABC_tran DYD3_k127_602249_0 700598.Niako_1199 7.471e-135 442.0 COG1538@1|root,COG1538@2|Bacteria,4NEEN@976|Bacteroidetes,1IR03@117747|Sphingobacteriia 976|Bacteroidetes MU outer membrane efflux protein tolC - - ko:K12340 ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133 M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko02044 1.B.17,2.A.6.2 - - OEP DYD3_k127_602249_5 449673.BACSTE_00387 0.0001548 46.0 2A0YE@1|root,30P3N@2|Bacteria,4PBMI@976|Bacteroidetes,2FZ89@200643|Bacteroidia,4AUWQ@815|Bacteroidaceae 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_602249_2 700598.Niako_1954 4.139e-120 396.0 COG1752@1|root,COG1752@2|Bacteria,4NISG@976|Bacteroidetes 976|Bacteroidetes S Patatin-like phospholipase - - - ko:K07001 - - - - ko00000 - - - Patatin DYD3_k127_602249_4 700598.Niako_1192 1.186e-72 250.0 COG0621@1|root,COG0621@2|Bacteria,4NDU6@976|Bacteroidetes,1IPSP@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB - 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 DYD3_k127_6031263_3 1267211.KI669560_gene1901 2.477e-16 81.0 2AUDP@1|root,31K1P@2|Bacteria,4NRCQ@976|Bacteroidetes,1IYFT@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2452) - - - - - - - - - - - - DUF2452 DYD3_k127_6031263_2 925409.KI911562_gene2305 9.533e-21 97.0 2DNWS@1|root,32ZK9@2|Bacteria,4NUTW@976|Bacteroidetes,1IZWH@117747|Sphingobacteriia 976|Bacteroidetes S Proteolipid membrane potential modulator - - - - - - - - - - - - Pmp3 DYD3_k127_6031263_0 700598.Niako_1157 1.633e-146 472.0 28I9E@1|root,2Z8C2@2|Bacteria,4NFBW@976|Bacteroidetes,1IP9P@117747|Sphingobacteriia 976|Bacteroidetes S Family of unknown function (DUF695) - - - - - - - - - - - - - DYD3_k127_6031263_1 700598.Niako_1158 8.793e-75 256.0 COG0642@1|root,COG2205@2|Bacteria,4NK0U@976|Bacteroidetes,1IQHZ@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,HisKA_7TM,SBP_bac_3 DYD3_k127_604297_1 700598.Niako_1031 2.42e-93 309.0 COG0225@1|root,COG0225@2|Bacteria,4NMAJ@976|Bacteroidetes,1IS23@117747|Sphingobacteriia 976|Bacteroidetes O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine msrA - 1.8.4.11 ko:K07304 - - - - ko00000,ko01000 - - - PMSR DYD3_k127_604297_0 700598.Niako_1034 1.614e-283 878.0 COG1193@1|root,COG1193@2|Bacteria,4NFE6@976|Bacteroidetes,1IP8R@117747|Sphingobacteriia 976|Bacteroidetes L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity mutS2 - - ko:K07456 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_V,Smr DYD3_k127_6054719_0 700598.Niako_3024 2.567e-243 756.0 COG0015@1|root,COG0015@2|Bacteria,4NFY8@976|Bacteroidetes,1IPIU@117747|Sphingobacteriia 976|Bacteroidetes F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily purB - 4.3.2.2 ko:K01756 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048,M00049 R01083,R04559 RC00379,RC00444,RC00445 ko00000,ko00001,ko00002,ko01000 - - - ADSL_C,ASL_C,Lyase_1 DYD3_k127_6054719_1 700598.Niako_3023 8.144e-105 345.0 COG1427@1|root,COG1427@2|Bacteria,4NN4W@976|Bacteroidetes,1ISCN@117747|Sphingobacteriia 976|Bacteroidetes S Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) mqnA - 4.2.1.151 ko:K11782 ko00130,ko01110,map00130,map01110 - R10666 RC03232 ko00000,ko00001,ko01000 - - - VitK2_biosynth DYD3_k127_6058420_0 700598.Niako_3565 2.223e-321 1000.0 COG0474@1|root,COG0474@2|Bacteria,4NERM@976|Bacteroidetes,1IR88@117747|Sphingobacteriia 976|Bacteroidetes P TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter - - 3.6.3.8 ko:K01537 - - - - ko00000,ko01000 3.A.3.2 - - Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3 DYD3_k127_6058420_1 929713.NIASO_19140 1.136e-69 251.0 COG2373@1|root,COG2373@2|Bacteria,4PKR7@976|Bacteroidetes,1J0ZN@117747|Sphingobacteriia 976|Bacteroidetes S Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarbopepD_reg_2 DYD3_k127_6058420_2 869213.JCM21142_83180 5.744e-13 72.0 COG4589@1|root,COG4589@2|Bacteria,4NT8F@976|Bacteroidetes,47W0E@768503|Cytophagia 976|Bacteroidetes S Cytidylyltransferase family - - 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_1 DYD3_k127_6059220_1 700598.Niako_7326 1.261e-82 276.0 COG0849@1|root,COG0849@2|Bacteria,4NE0V@976|Bacteroidetes,1IQJQ@117747|Sphingobacteriia 976|Bacteroidetes D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring ftsA - - ko:K03590 ko04112,map04112 - - - ko00000,ko00001,ko03036,ko04812 - - - FtsA,SHS2_FTSA DYD3_k127_6059220_0 700598.Niako_7327 1.064e-272 850.0 COG0206@1|root,COG0206@2|Bacteria,4NF8N@976|Bacteroidetes,1IR5B@117747|Sphingobacteriia 976|Bacteroidetes D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity ftsZ - - ko:K03531 ko04112,map04112 - - - ko00000,ko00001,ko02048,ko03036,ko04812 - - - FtsZ_C,Tubulin DYD3_k127_6059220_3 267377.MMP0898 5.332e-07 63.0 COG1800@1|root,arCOG02559@1|root,arCOG03561@1|root,arCOG04500@1|root,arCOG02559@2157|Archaea,arCOG03419@2157|Archaea,arCOG03561@2157|Archaea,arCOG04500@2157|Archaea,2Y7QQ@28890|Euryarchaeota,23RDP@183939|Methanococci 183939|Methanococci O S-layer like family, C-terminal region - - - - - - - - - - - - - DYD3_k127_6059220_2 1131812.JQMS01000001_gene2544 1.674e-33 149.0 COG4886@1|root,COG4886@2|Bacteria,4NFXV@976|Bacteroidetes,1I00F@117743|Flavobacteriia,2NT0J@237|Flavobacterium 976|Bacteroidetes S Pkd domain containing protein - - - - - - - - - - - - - DYD3_k127_6062826_4 700598.Niako_6898 8.256e-122 393.0 COG0745@1|root,COG0745@2|Bacteria,4NG7D@976|Bacteroidetes,1IPM8@117747|Sphingobacteriia 976|Bacteroidetes T COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain phoP - - ko:K07658 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C DYD3_k127_6062826_1 700598.Niako_6897 1.079e-183 578.0 COG5002@1|root,COG5002@2|Bacteria,4NETP@976|Bacteroidetes,1IQ3E@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase phoR - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA DYD3_k127_6062826_2 700598.Niako_2709 1.039e-169 540.0 COG0665@1|root,COG0665@2|Bacteria,4NFPQ@976|Bacteroidetes,1IQHS@117747|Sphingobacteriia 976|Bacteroidetes E PFAM FAD dependent oxidoreductase - - - - - - - - - - - - DAO DYD3_k127_6062826_0 700598.Niako_2710 7.291e-196 618.0 2C31A@1|root,2Z7UP@2|Bacteria,4NECU@976|Bacteroidetes,1IQU7@117747|Sphingobacteriia 976|Bacteroidetes S Psort location CytoplasmicMembrane, score 10.00 - - - - - - - - - - - - - DYD3_k127_6062826_5 700598.Niako_2711 2.073e-66 231.0 COG0546@1|root,COG0546@2|Bacteria,4NMEX@976|Bacteroidetes,1IS6P@117747|Sphingobacteriia 976|Bacteroidetes S HAD-hyrolase-like - - - - - - - - - - - - HAD_2 DYD3_k127_6065004_1 756272.Plabr_4187 3.257e-66 240.0 COG0438@1|root,COG0438@2|Bacteria,2J0TS@203682|Planctomycetes 203682|Planctomycetes M PFAM Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 DYD3_k127_6065004_3 481448.Minf_0572 5.705e-26 116.0 COG2242@1|root,COG2242@2|Bacteria 2|Bacteria H protein methyltransferase activity - - 2.1.1.242,2.1.1.303,2.1.1.319 ko:K11434,ko:K15984,ko:K20421 ko01059,ko01130,ko04068,ko04922,map01059,map01130,map04068,map04922 M00830 R10963,R11216,R11217,R11219 RC00003,RC00392,RC02120,RC03388,RC03390 ko00000,ko00001,ko00002,ko01000,ko03009,ko03036 - - - DOT1,Methyltransf_21,Methyltransf_25 DYD3_k127_6065004_2 489825.LYNGBM3L_50450 9.275e-38 149.0 COG0110@1|root,COG0110@2|Bacteria,1G8ZT@1117|Cyanobacteria,1HD90@1150|Oscillatoriales 1117|Cyanobacteria S Bacterial transferase hexapeptide (three repeats) - - 2.3.1.79 ko:K00661 - - - - ko00000,ko01000 - - - Hexapep,Hexapep_2 DYD3_k127_6065004_0 1121373.KB903632_gene584 5.735e-109 364.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 DYD3_k127_6078439_0 700598.Niako_2092 1.62e-195 612.0 COG0158@1|root,COG0158@2|Bacteria,4NG06@976|Bacteroidetes,1IQAD@117747|Sphingobacteriia 976|Bacteroidetes G D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 fbp - 3.1.3.11 ko:K03841 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910 M00003,M00165,M00167,M00344 R00762,R04780 RC00017 ko00000,ko00001,ko00002,ko01000,ko04147 - - - FBPase DYD3_k127_6078439_2 1185876.BN8_05214 2.567e-34 139.0 COG0454@1|root,COG0456@2|Bacteria,4NHRI@976|Bacteroidetes,47RPY@768503|Cytophagia 976|Bacteroidetes K PFAM Acetyltransferase (GNAT) family - - - - - - - - - - - - Acetyltransf_1 DYD3_k127_6078439_3 700598.Niako_2091 1.451e-33 136.0 COG2340@1|root,COG2340@2|Bacteria,4NNKS@976|Bacteroidetes,1IYS1@117747|Sphingobacteriia 976|Bacteroidetes S PFAM SCP-like extracellular - - - - - - - - - - - - CAP DYD3_k127_6078439_1 485918.Cpin_6005 1.736e-64 226.0 2DZVJ@1|root,32VK4@2|Bacteria,4P2TC@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6086274_2 504472.Slin_0936 3.118e-93 316.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_6086274_0 929556.Solca_0260 4.209e-311 971.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IRAB@117747|Sphingobacteriia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,HTH_18,MacB_PCD DYD3_k127_6086274_1 929703.KE386491_gene1730 1.202e-277 874.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47MYR@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_6086274_3 700598.Niako_5205 9.386e-86 288.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IV3C@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_6088962_0 509635.N824_12560 2.835e-81 279.0 COG0380@1|root,COG1877@1|root,COG0380@2|Bacteria,COG1877@2|Bacteria,4NGJ4@976|Bacteroidetes,1IVIN@117747|Sphingobacteriia 976|Bacteroidetes G Trehalose-phosphatase - - 2.4.1.15,3.1.3.12 ko:K16055 ko00500,ko01100,map00500,map01100 - R02737,R02778 RC00005,RC00017,RC00049,RC02748 ko00000,ko00001,ko01000,ko01003 - GT20 - Glyco_transf_20,Trehalose_PPase DYD3_k127_6088962_2 391596.PBAL39_15444 3.186e-36 146.0 COG1808@1|root,COG1808@2|Bacteria,4NDXI@976|Bacteroidetes,1IPNW@117747|Sphingobacteriia 976|Bacteroidetes S membrane - - - - - - - - - - - - DUF389 DYD3_k127_6088962_1 700598.Niako_7233 1.096e-58 214.0 COG0589@1|root,COG0589@2|Bacteria,4NP07@976|Bacteroidetes 976|Bacteroidetes T Universal stress protein - - - - - - - - - - - - Usp DYD3_k127_6090775_2 1267211.KI669560_gene1612 5.793e-67 230.0 COG0531@1|root,COG0531@2|Bacteria,4NDU2@976|Bacteroidetes,1IPFZ@117747|Sphingobacteriia 976|Bacteroidetes E amino acid - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2,AA_permease_C DYD3_k127_6090775_1 700598.Niako_0920 1.184e-157 501.0 COG0142@1|root,COG0142@2|Bacteria,4NEGQ@976|Bacteroidetes,1INSC@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the FPP GGPP synthase family idsA - 2.5.1.1,2.5.1.10,2.5.1.29 ko:K13789 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00364,M00366 R01658,R02003,R02061 RC00279 ko00000,ko00001,ko00002,ko01000,ko01006 - - - polyprenyl_synt DYD3_k127_6090775_0 700598.Niako_0919 6.082e-215 672.0 COG0557@1|root,COG0557@2|Bacteria,4NE7T@976|Bacteroidetes,1IPGD@117747|Sphingobacteriia 976|Bacteroidetes K 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs rnr - - ko:K12573,ko:K12585 ko03018,map03018 M00391 - - ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 - - - OB_RNB,RNB,S1 DYD3_k127_6099649_3 700598.Niako_5833 2.795e-122 400.0 COG4251@1|root,COG5278@1|root,COG4251@2|Bacteria,COG5278@2|Bacteria,4NGXA@976|Bacteroidetes,1IXZM@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - CHASE3,HATPase_c,HisKA,PAS_9 DYD3_k127_6099649_7 700598.Niako_5831 1.064e-16 80.0 COG5487@1|root,COG5487@2|Bacteria 2|Bacteria S UPF0391 membrane protein - - - - - - - - - - - - DUF1328 DYD3_k127_6099649_4 700598.Niako_5830 1.119e-63 220.0 COG0784@1|root,COG0784@2|Bacteria,4PMQG@976|Bacteroidetes,1IU27@117747|Sphingobacteriia 976|Bacteroidetes T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg DYD3_k127_6099649_5 700598.Niako_5826 1.382e-50 181.0 COG0745@1|root,COG0745@2|Bacteria 700598.Niako_5826|- T phosphorelay signal transduction system - - - - - - - - - - - - - DYD3_k127_6099649_1 700598.Niako_5825 1.247e-143 462.0 COG0057@1|root,COG0057@2|Bacteria,4NEMF@976|Bacteroidetes,1IQAX@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family - - 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N DYD3_k127_6099649_2 700598.Niako_5824 2.806e-130 417.0 COG0745@1|root,COG0745@2|Bacteria,4NE77@976|Bacteroidetes,1IWJZ@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C DYD3_k127_6099649_0 700598.Niako_5823 2.437e-166 535.0 COG0642@1|root,COG2972@1|root,COG2205@2|Bacteria,COG2972@2|Bacteria,4NEIS@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HAMP,HATPase_c,HisKA DYD3_k127_6104736_2 700598.Niako_4519 5.054e-56 200.0 2EDN0@1|root,337HT@2|Bacteria,4NVQJ@976|Bacteroidetes,1ITXS@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6104736_1 700598.Niako_4518 7.178e-86 288.0 COG1595@1|root,COG1595@2|Bacteria,4NP02@976|Bacteroidetes,1J06I@117747|Sphingobacteriia 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_6104736_3 700598.Niako_4517 9.573e-35 136.0 2EFPT@1|root,339FT@2|Bacteria,4NV1V@976|Bacteroidetes,1IU65@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6104736_0 700598.Niako_4516 5.527e-142 455.0 COG0793@1|root,COG0793@2|Bacteria,4NEGV@976|Bacteroidetes,1IP8V@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the peptidase S41A family ctpB - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 DYD3_k127_6108329_0 714943.Mucpa_4120 3.016e-226 707.0 COG3534@1|root,COG3534@2|Bacteria,4NECK@976|Bacteroidetes,1IP52@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-L-arabinofuranosidase domain protein - - 3.2.1.55 ko:K01209 ko00520,map00520 - R01762 - ko00000,ko00001,ko01000 - GH51 - Alpha-L-AF_C DYD3_k127_6108329_1 700598.Niako_4391 2.497e-103 340.0 COG0637@1|root,COG0637@2|Bacteria,4NEEH@976|Bacteroidetes,1IRVG@117747|Sphingobacteriia 976|Bacteroidetes S subfamily IA, variant 3 with third motif having DD or ED pgmB - - - - - - - - - - - HAD_2 DYD3_k127_6108329_3 714943.Mucpa_0144 1.202e-17 98.0 2EXNQ@1|root,33QYF@2|Bacteria,4P0VW@976|Bacteroidetes,1IVYV@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6108329_2 714943.Mucpa_0143 5.73e-61 223.0 2DEAF@1|root,2ZM5X@2|Bacteria,4PMD1@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6109567_4 1254432.SCE1572_15575 8.88e-16 81.0 COG0457@1|root,COG0457@2|Bacteria,1N0A9@1224|Proteobacteria,42YQ0@68525|delta/epsilon subdivisions,2WTRV@28221|Deltaproteobacteria,2YUFX@29|Myxococcales 28221|Deltaproteobacteria S COG0457 FOG TPR repeat - - - - - - - - - - - - - DYD3_k127_6109567_2 1297570.MESS4_740004 2.632e-65 234.0 COG0010@1|root,COG0010@2|Bacteria 2|Bacteria E hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines - - 3.5.3.1,3.5.3.11 ko:K01476,ko:K01480 ko00220,ko00330,ko01100,ko01110,ko01130,ko01230,ko05146,map00220,map00330,map01100,map01110,map01130,map01230,map05146 M00029,M00133,M00134 R00551,R01157 RC00024,RC00329 ko00000,ko00001,ko00002,ko01000 - - - Arginase DYD3_k127_6109567_0 700598.Niako_0301 2.744e-197 622.0 COG4941@1|root,COG4941@2|Bacteria,4NGCS@976|Bacteroidetes,1IX0V@117747|Sphingobacteriia 976|Bacteroidetes K COGs COG4941 RNA polymerase sigma factor containing a TPR repeat domain - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_6109567_3 700598.Niako_0302 1.434e-49 178.0 COG3795@1|root,COG3795@2|Bacteria,4NUTR@976|Bacteroidetes 976|Bacteroidetes S YCII-related domain - - - - - - - - - - - - YCII DYD3_k127_6109567_1 1123248.KB893314_gene3386 1.869e-109 371.0 COG2133@1|root,COG2133@2|Bacteria,4NF0B@976|Bacteroidetes,1IVY8@117747|Sphingobacteriia 976|Bacteroidetes G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - CBM_6,GSDH DYD3_k127_6113852_0 1123248.KB893348_gene356 0.0 1268.0 COG0653@1|root,COG0653@2|Bacteria,4NF7C@976|Bacteroidetes,1IPHM@117747|Sphingobacteriia 976|Bacteroidetes U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - Helicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW DYD3_k127_6113852_2 485917.Phep_2104 2.24e-25 110.0 2ERXU@1|root,33JH1@2|Bacteria,4NYP3@976|Bacteroidetes,1IZ9P@117747|Sphingobacteriia 976|Bacteroidetes M Chaperone of endosialidase - - - - - - - - - - - - Peptidase_S74 DYD3_k127_6113852_1 1267211.KI669560_gene2055 2.911e-48 179.0 COG0457@1|root,COG0457@2|Bacteria,4P4HM@976|Bacteroidetes,1J0YF@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2911) - - - - - - - - - - - - DUF2911 DYD3_k127_6127251_2 929562.Emtol_1627 3.984e-120 394.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,47MGE@768503|Cytophagia 976|Bacteroidetes S ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_6127251_0 925409.KI911562_gene1585 7.35e-300 926.0 COG2303@1|root,COG2303@2|Bacteria,4NEF2@976|Bacteroidetes,1IV39@117747|Sphingobacteriia 976|Bacteroidetes E GMC oxidoreductase - - - - - - - - - - - - FAD_binding_2,GMC_oxred_C,GMC_oxred_N,NAD_binding_8 DYD3_k127_6127251_1 760192.Halhy_1519 1.388e-171 549.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IVZC@117747|Sphingobacteriia 976|Bacteroidetes S ASPIC and UnbV - - - - - - - - - - - - FG-GAP,UnbV_ASPIC,VCBS DYD3_k127_6131240_1 760192.Halhy_0027 4.688e-51 187.0 COG1629@1|root,COG4771@2|Bacteria,4NDX3@976|Bacteroidetes,1IPS9@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug domain - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6131240_0 1123248.KB893333_gene2815 5.337e-92 304.0 COG2128@1|root,COG2128@2|Bacteria,4NMGS@976|Bacteroidetes,1IXMN@117747|Sphingobacteriia 976|Bacteroidetes S Carboxymuconolactone decarboxylase family - - - - - - - - - - - - CMD DYD3_k127_6131240_3 504487.JCM19302_1932 8.39e-21 93.0 COG4995@1|root,COG4995@2|Bacteria,4NHCZ@976|Bacteroidetes,1HXNK@117743|Flavobacteriia 976|Bacteroidetes S CHAT domain - - - - - - - - - - - - CHAT,TPR_12,TPR_8 DYD3_k127_6138075_1 700598.Niako_4715 5.683e-20 93.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_1_2,Glyco_trans_1_4,Glycos_transf_1 DYD3_k127_6138075_0 700598.Niako_4713 0.0 1230.0 COG0046@1|root,COG0046@2|Bacteria,4NETY@976|Bacteroidetes,1IR8F@117747|Sphingobacteriia 976|Bacteroidetes F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL purL - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C,GATase_5 DYD3_k127_6143431_0 985255.APHJ01000021_gene1341 9.43e-73 253.0 COG1922@1|root,COG1922@2|Bacteria,4NJGT@976|Bacteroidetes,1I0I3@117743|Flavobacteriia,2P7Q9@244698|Gillisia 976|Bacteroidetes M Glycosyl transferase WecB/TagA/CpsF family - - 2.4.1.187 ko:K05946 ko05111,map05111 - - - ko00000,ko00001,ko01000,ko01003 - GT26 - Glyco_tran_WecB DYD3_k127_6143431_1 391612.CY0110_12442 1.897e-58 222.0 COG1807@1|root,COG1807@2|Bacteria,1G0W2@1117|Cyanobacteria,3KGRQ@43988|Cyanothece 1117|Cyanobacteria M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - PMT_2 DYD3_k127_6147017_4 1237149.C900_02938 0.0001095 50.0 COG2374@1|root,COG2374@2|Bacteria 2|Bacteria - - - - - ko:K07004 - - - - ko00000 - - - Big_4,Big_5,DUF3494,LTD,SLH DYD3_k127_6147017_3 1313421.JHBV01000138_gene1206 1.291e-64 241.0 COG5295@1|root,COG5295@2|Bacteria,4NF3S@976|Bacteroidetes,1ISQ8@117747|Sphingobacteriia 976|Bacteroidetes UW domain, Protein - - - - - - - - - - - - Collagen,Peptidase_S74 DYD3_k127_6147017_1 1408813.AYMG01000007_gene4282 1.295e-110 372.0 COG0739@1|root,COG0739@2|Bacteria,4NEBZ@976|Bacteroidetes,1IWGS@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase family M23 - - - ko:K21472 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23,SH3_3,SH3_4 DYD3_k127_6147017_2 700598.Niako_3751 2.372e-90 302.0 COG0693@1|root,COG0693@2|Bacteria,4NQI1@976|Bacteroidetes,1IS7S@117747|Sphingobacteriia 976|Bacteroidetes S Intracellular protease, PfpI family - - 3.5.1.124 ko:K05520 - - - - ko00000,ko01000,ko01002 - - - DJ-1_PfpI DYD3_k127_6147017_0 700598.Niako_6718 0.0 1143.0 COG1629@1|root,COG1629@2|Bacteria,4P4MW@976|Bacteroidetes,1IRE6@117747|Sphingobacteriia 976|Bacteroidetes P Outer membrane protein beta-barrel family - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD3_k127_6150344_0 700598.Niako_7277 0.0 1066.0 COG1472@1|root,COG1472@2|Bacteria,4NE90@976|Bacteroidetes,1IV1V@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycosyl hydrolase family 3 C terminal domain - - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C DYD3_k127_6150344_1 1122605.KB893647_gene347 5.121e-100 360.0 2BZ6M@1|root,2Z7HW@2|Bacteria,4NDZE@976|Bacteroidetes,1IQ38@117747|Sphingobacteriia 976|Bacteroidetes S Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_6150344_3 376686.Fjoh_2292 1.009e-14 80.0 2DZKQ@1|root,32VDA@2|Bacteria,4NSEZ@976|Bacteroidetes,1IBH6@117743|Flavobacteriia,2NXU0@237|Flavobacterium 976|Bacteroidetes S Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - - DYD3_k127_6150344_2 485918.Cpin_6310 9.663e-23 97.0 COG1718@1|root,COG1718@2|Bacteria,4NEF6@976|Bacteroidetes,1IPMV@117747|Sphingobacteriia 976|Bacteroidetes DT aminotransferase class I and II - - - - - - - - - - - - - DYD3_k127_6152137_3 700598.Niako_0136 7.957e-137 445.0 COG2373@1|root,COG2373@2|Bacteria,4NED2@976|Bacteroidetes,1IQPG@117747|Sphingobacteriia 976|Bacteroidetes S COG2373 Large extracellular alpha-helical protein - - - - - - - - - - - - A2M,A2M_N,A2M_N_2,CarbopepD_reg_2,Plug DYD3_k127_6152137_1 700598.Niako_0138 1.415e-166 526.0 COG0074@1|root,COG0074@2|Bacteria,4NE6B@976|Bacteroidetes,1INZ1@117747|Sphingobacteriia 976|Bacteroidetes C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit sucD - 6.2.1.5 ko:K01902 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00405,R02404 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000 - - - CoA_binding,Ligase_CoA,Succ_CoA_lig DYD3_k127_6152137_2 700598.Niako_0139 1.079e-141 453.0 COG1127@1|root,COG1127@2|Bacteria,4NETG@976|Bacteroidetes,1IP0Y@117747|Sphingobacteriia 976|Bacteroidetes Q ABC transporter metN - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran DYD3_k127_6152137_4 700598.Niako_0140 1.258e-121 393.0 COG0767@1|root,COG0767@2|Bacteria,4NEZ8@976|Bacteroidetes,1IQDU@117747|Sphingobacteriia 976|Bacteroidetes Q ABC-type transport system involved in resistance to organic solvents permease component mlaE - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE DYD3_k127_6152137_0 700598.Niako_0141 0.0 1285.0 COG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,4NFUJ@976|Bacteroidetes,1IP28@117747|Sphingobacteriia 976|Bacteroidetes C malic enzyme maeB - 1.1.1.38,1.1.1.40 ko:K00027,ko:K00029 ko00620,ko00710,ko01100,ko01120,ko01200,ko02020,map00620,map00710,map01100,map01120,map01200,map02020 M00169,M00172 R00214,R00216 RC00105 ko00000,ko00001,ko00002,ko01000 - - - Malic_M,PTA_PTB,malic DYD3_k127_6163587_0 700598.Niako_6981 6.394e-242 759.0 COG0369@1|root,COG0369@2|Bacteria,4NHR8@976|Bacteroidetes,1IP37@117747|Sphingobacteriia 976|Bacteroidetes P Flavodoxin cysJ - 1.8.1.2 ko:K00380 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00176 R00858 RC00065 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_1,Flavodoxin_1,NAD_binding_1,PepSY_TM DYD3_k127_6163587_1 700598.Niako_6977 2.862e-221 693.0 COG2895@1|root,COG2895@2|Bacteria,4NETI@976|Bacteroidetes,1IQ1H@117747|Sphingobacteriia 976|Bacteroidetes P Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily cysN - 2.7.1.25,2.7.7.4 ko:K00955,ko:K00956 ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130 M00176,M00596 R00509,R00529,R04928,R04929 RC00002,RC00078,RC02809,RC02889 ko00000,ko00001,ko00002,ko01000 - - - GTP_EFTU DYD3_k127_6163587_2 700598.Niako_6976 1.4e-175 552.0 COG0175@1|root,COG0175@2|Bacteria,4NEPD@976|Bacteroidetes,1INWY@117747|Sphingobacteriia 976|Bacteroidetes EH PFAM Phosphoadenosine phosphosulfate reductase cysD - 2.7.7.4 ko:K00957 ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130 M00176,M00596 R00529,R04929 RC02809,RC02889 ko00000,ko00001,ko00002,ko01000 - - - PAPS_reduct DYD3_k127_6163587_3 700598.Niako_6975 1.004e-136 437.0 COG0175@1|root,COG0175@2|Bacteria,4NGVI@976|Bacteroidetes,1IQ9Q@117747|Sphingobacteriia 976|Bacteroidetes EH Reduction of activated sulfate into sulfite cysH - 1.8.4.10,1.8.4.8 ko:K00390 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00176 R02021 RC00007,RC02862 ko00000,ko00001,ko00002,ko01000 - - - PAPS_reduct DYD3_k127_6163587_4 929556.Solca_1372 1.032e-06 53.0 COG3832@1|root,COG3832@2|Bacteria,4NST9@976|Bacteroidetes,1ISQV@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Activator of Hsp90 ATPase - - - - - - - - - - - - AHSA1 DYD3_k127_6163943_0 700598.Niako_6041 0.0 1062.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IWKA@117747|Sphingobacteriia 976|Bacteroidetes S ASPIC and UnbV - - - - - - - - - - - - FG-GAP,UnbV_ASPIC,VCBS DYD3_k127_6163943_1 1123248.KB893317_gene4364 2.449e-25 114.0 COG1404@1|root,COG3291@1|root,COG3386@1|root,COG1404@2|Bacteria,COG3291@2|Bacteria,COG3386@2|Bacteria,4PM1B@976|Bacteroidetes,1IXBK@117747|Sphingobacteriia 976|Bacteroidetes G SPTR Cell surface protein - - - - - - - - - - - - CHU_C,SBBP DYD3_k127_6180091_2 1123248.KB893331_gene3763 2.143e-94 313.0 COG3531@1|root,COG3531@2|Bacteria,4NQKI@976|Bacteroidetes,1IXJ5@117747|Sphingobacteriia 976|Bacteroidetes O Protein-disulfide isomerase dsbC - - ko:K07396 - - - - ko00000 - - - DSBA,Thioredoxin_5 DYD3_k127_6180091_1 700598.Niako_1866 3.219e-133 431.0 COG1105@1|root,COG1105@2|Bacteria,4NFZI@976|Bacteroidetes,1IR0I@117747|Sphingobacteriia 976|Bacteroidetes G belongs to the carbohydrate kinase PfkB family pfkB - 2.7.1.11,2.7.1.144 ko:K00917,ko:K16370 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00345 R00756,R03236,R03237,R03238,R03239,R04779 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - PfkB DYD3_k127_6180091_0 700598.Niako_6295 3.501e-194 610.0 COG2159@1|root,COG2159@2|Bacteria,4NG9U@976|Bacteroidetes,1IWYY@117747|Sphingobacteriia 976|Bacteroidetes S Amidohydrolase - - - - - - - - - - - - Amidohydro_2 DYD3_k127_6180091_3 509190.Cseg_2791 4.722e-07 51.0 2E902@1|root,3339H@2|Bacteria,1N9U6@1224|Proteobacteria,2UFG4@28211|Alphaproteobacteria,2KH8D@204458|Caulobacterales 204458|Caulobacterales - - - - - - - - - - - - - - - DYD3_k127_6217559_2 761193.Runsl_5529 8.805e-49 176.0 COG0642@1|root,COG0745@1|root,COG4251@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG4251@2|Bacteria,4NE3J@976|Bacteroidetes,47JCX@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg DYD3_k127_6217559_3 251229.Chro_1594 1.443e-22 100.0 COG2199@1|root,COG2203@1|root,COG3829@1|root,COG4251@1|root,COG2203@2|Bacteria,COG3706@2|Bacteria,COG3829@2|Bacteria,COG4251@2|Bacteria,1G1Z5@1117|Cyanobacteria,3VKZX@52604|Pleurocapsales 1117|Cyanobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - GAF,HATPase_c,HisKA,PAS_2,PAS_3,PAS_9,PHY,Response_reg DYD3_k127_6217559_4 925409.KI911562_gene992 0.0003798 44.0 29NNR@1|root,309KP@2|Bacteria,4NMF1@976|Bacteroidetes,1IRMU@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6217559_1 509635.N824_22155 6.766e-71 245.0 COG0262@1|root,COG0262@2|Bacteria 2|Bacteria H dihydrofolate reductase activity - - 1.5.1.3 ko:K00287 ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523 M00126,M00840 R00936,R00937,R00939,R00940,R02235,R02236,R11765 RC00109,RC00110,RC00158 ko00000,ko00001,ko00002,ko01000 - - - RibD_C DYD3_k127_6217559_0 1502852.FG94_02337 3.831e-190 603.0 COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2VHVB@28216|Betaproteobacteria,472VG@75682|Oxalobacteraceae 28216|Betaproteobacteria S Insulinase (Peptidase family M16) - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C DYD3_k127_6218101_2 555500.I215_03128 2.093e-89 301.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,1HXZD@117743|Flavobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 31 family - - 3.2.1.177 ko:K01811 - - - - ko00000,ko01000 - GH31 - DUF4968,DUF5110,F5_F8_type_C,Gal_mutarotas_2,Glyco_hydro_31 DYD3_k127_6218101_0 700598.Niako_0187 2.703e-112 369.0 COG2367@1|root,COG2367@2|Bacteria,4PMKC@976|Bacteroidetes,1J006@117747|Sphingobacteriia 976|Bacteroidetes V Beta-lactamase enzyme family - - 3.5.2.6 ko:K17836 ko00311,ko01130,ko01501,map00311,map01130,map01501 M00627,M00628 R06363 RC01499 ko00000,ko00001,ko00002,ko01000,ko01504 - - - Beta-lactamase2 DYD3_k127_6218101_3 485918.Cpin_1791 1.413e-26 113.0 COG0745@1|root,COG0745@2|Bacteria,4NXE8@976|Bacteroidetes 976|Bacteroidetes T Pfam Response regulator receiver - - - - - - - - - - - - Response_reg DYD3_k127_6218101_4 1249975.JQLP01000008_gene314 7.355e-23 109.0 COG2819@1|root,COG2819@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds yuiI - - ko:K07017 - - - - ko00000 - - - Esterase DYD3_k127_6218101_1 700598.Niako_5055 5.029e-90 299.0 COG0657@1|root,COG0657@2|Bacteria,4NH62@976|Bacteroidetes,1IQ0H@117747|Sphingobacteriia 976|Bacteroidetes I COG0657 Esterase lipase - - - - - - - - - - - - Abhydrolase_3,Peptidase_S9 DYD3_k127_6220388_0 485918.Cpin_2850 1.666e-206 647.0 COG3119@1|root,COG3119@2|Bacteria,4NEBN@976|Bacteroidetes,1IVS4@117747|Sphingobacteriia 976|Bacteroidetes P Type I phosphodiesterase / nucleotide pyrophosphatase - - 3.1.6.1 ko:K01130 ko00140,ko00600,map00140,map00600 - R03980,R04856 RC00128,RC00231 ko00000,ko00001,ko01000 - - - Sulfatase DYD3_k127_6220388_1 485918.Cpin_2851 1.293e-146 469.0 COG3934@1|root,COG3934@2|Bacteria,4NGQC@976|Bacteroidetes,1IQW7@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolases family 2, TIM barrel domain - - - - - - - - - - - - Cellulase,Glyco_hydro_2_C DYD3_k127_622857_0 700598.Niako_0377 1.461e-76 260.0 COG0454@1|root,COG0456@2|Bacteria,4NNG9@976|Bacteroidetes,1ISS7@117747|Sphingobacteriia 976|Bacteroidetes K Acetyltransferase (GNAT) domain - - - ko:K03828 - - - - ko00000,ko01000 - - - Acetyltransf_1 DYD3_k127_622857_1 1185876.BN8_03521 5.441e-51 195.0 28IMM@1|root,2Z8N3@2|Bacteria,4NGS9@976|Bacteroidetes,47KAZ@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_622857_4 1121895.Q765_15255 1.091e-19 93.0 2A2D0@1|root,30QQ0@2|Bacteria,4PCXC@976|Bacteroidetes,1IDEY@117743|Flavobacteriia,2NY60@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_622857_3 700598.Niako_0380 1.919e-22 96.0 COG0045@1|root,COG0045@2|Bacteria,4NFHA@976|Bacteroidetes,1IQ0Q@117747|Sphingobacteriia 976|Bacteroidetes C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit sucC - 6.2.1.5 ko:K01903 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00405,R02404 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp_2,Ligase_CoA DYD3_k127_6229744_0 700598.Niako_6503 9.19e-91 301.0 COG0363@1|root,COG0363@2|Bacteria,4NGB9@976|Bacteroidetes,1ISCM@117747|Sphingobacteriia 976|Bacteroidetes G PFAM glucosamine galactosamine-6-phosphate isomerase pgl - 3.1.1.31 ko:K01057 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200 M00004,M00006,M00008 R02035 RC00537 ko00000,ko00001,ko00002,ko01000 - - - Glucosamine_iso DYD3_k127_6229744_2 700598.Niako_6500 2.903e-49 179.0 COG4316@1|root,COG4316@2|Bacteria,4P81H@976|Bacteroidetes 976|Bacteroidetes S Uncharacterized protein conserved in bacteria (DUF2251) - - - - - - - - - - - - DUF2251 DYD3_k127_6229744_1 700598.Niako_6499 7.312e-57 201.0 2C85M@1|root,31482@2|Bacteria,4NS0C@976|Bacteroidetes,1IYQ0@117747|Sphingobacteriia 976|Bacteroidetes S Stress responsive alpha-beta barrel domain protein - - - - - - - - - - - - Dabb DYD3_k127_6229744_3 402612.FP0902 2.061e-42 173.0 COG4783@1|root,COG4783@2|Bacteria,4NM0X@976|Bacteroidetes,1I0RP@117743|Flavobacteriia,2NXZE@237|Flavobacterium 976|Bacteroidetes S Peptidase family M48 - - - - - - - - - - - - Peptidase_M48 DYD3_k127_6229744_4 1121897.AUGO01000003_gene1737 1.604e-06 54.0 28NFT@1|root,2ZBI1@2|Bacteria,4NJ8P@976|Bacteroidetes,1I11A@117743|Flavobacteriia,2NXXQ@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6253491_1 1250006.JHZZ01000001_gene3240 1.785e-29 130.0 2AND9@1|root,31DBU@2|Bacteria,4NQ2N@976|Bacteroidetes,1I3I9@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6253491_0 926549.KI421517_gene4122 1.529e-166 529.0 COG3507@1|root,COG3507@2|Bacteria,4NEWE@976|Bacteroidetes,47MJY@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 43 family xynB - - - - - - - - - - - Glyco_hydro_43 DYD3_k127_6253491_2 1123248.KB893337_gene2570 8.019e-13 68.0 COG2146@1|root,COG4244@1|root,COG2146@2|Bacteria,COG4244@2|Bacteria,4NPHV@976|Bacteroidetes 976|Bacteroidetes P Predicted membrane protein (DUF2231) - - - - - - - - - - - - DUF2231 DYD3_k127_6253778_0 700598.Niako_6857 1.288e-172 546.0 28H74@1|root,2Z7JF@2|Bacteria,4NFR0@976|Bacteroidetes,1IQ08@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM gliding motility associated gldN - - - - - - - - - - - - DYD3_k127_6253778_1 700598.Niako_6856 1.682e-31 125.0 COG4219@1|root,COG4219@2|Bacteria,4PKZS@976|Bacteroidetes,1IR4A@117747|Sphingobacteriia 976|Bacteroidetes KT Gliding motility-associated protein GldM gldM - - - - - - - - - - - GldM_C,GldM_N DYD3_k127_6259236_2 1209072.ALBT01000007_gene2721 2.407e-41 171.0 COG2273@1|root,COG2273@2|Bacteria 2|Bacteria G xyloglucan:xyloglucosyl transferase activity - - - - - - - - - - - - CBM_4_9,CBM_6,F5_F8_type_C,Glyco_hydro_16 DYD3_k127_6259236_0 344747.PM8797T_05420 7.536e-122 408.0 COG3391@1|root,COG3391@2|Bacteria,2IY6R@203682|Planctomycetes 203682|Planctomycetes S amine dehydrogenase activity - - - - - - - - - - - - - DYD3_k127_6259236_1 525904.Tter_1958 4.008e-99 332.0 COG0129@1|root,COG0129@2|Bacteria,2NNSM@2323|unclassified Bacteria 2|Bacteria EG Belongs to the IlvD Edd family ilvD4 - 4.2.1.82,4.2.1.9 ko:K01687,ko:K22186 ko00040,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00040,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R01209,R02429,R04441,R05070 RC00468,RC00543,RC01714 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD DYD3_k127_6260279_2 700598.Niako_5478 5.572e-78 263.0 COG1136@1|root,COG1136@2|Bacteria,4NGDU@976|Bacteroidetes,1IPBQ@117747|Sphingobacteriia 976|Bacteroidetes V Part of the ABC transporter complex LolCDE involved in the translocation of lolD - - ko:K09810 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.125 - - ABC_tran DYD3_k127_6260279_3 700598.Niako_5479 1.463e-42 156.0 2C8VT@1|root,32RN1@2|Bacteria,4NS78@976|Bacteroidetes,1ITH1@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2795) - - - - - - - - - - - - DUF2795 DYD3_k127_6260279_0 700598.Niako_5480 4.407e-158 500.0 COG0623@1|root,COG0623@2|Bacteria,4NEVE@976|Bacteroidetes,1INTX@117747|Sphingobacteriia 976|Bacteroidetes I Enoyl- acyl-carrier-protein reductase NADH fabI - 1.3.1.10,1.3.1.9 ko:K00208 ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212 M00083,M00572 R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671 RC00052,RC00076,RC00120 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 DYD3_k127_6260279_5 1177594.MIC448_1680007 7.002e-05 48.0 COG1396@1|root,COG1396@2|Bacteria,2IC4C@201174|Actinobacteria,4FSQU@85023|Microbacteriaceae 201174|Actinobacteria K Cupin domain - - - - - - - - - - - - Cupin_2,HTH_19,HTH_3,HTH_31 DYD3_k127_6260279_4 572480.Arnit_2111 2.437e-14 81.0 COG3184@1|root,COG3184@2|Bacteria,1N7UG@1224|Proteobacteria,42XKS@68525|delta/epsilon subdivisions 1224|Proteobacteria S Uncharacterized protein conserved in bacteria (DUF2059) - - - ko:K09924 - - - - ko00000 - - - DUF2059 DYD3_k127_6260279_1 700598.Niako_5481 8.126e-156 497.0 COG0497@1|root,COG0497@2|Bacteria,4NE3I@976|Bacteroidetes,1IQ2B@117747|Sphingobacteriia 976|Bacteroidetes L May be involved in recombinational repair of damaged DNA recN - - ko:K03631 - - - - ko00000,ko03400 - - - SMC_N DYD3_k127_6262889_3 700598.Niako_5114 2.27e-66 228.0 COG0142@1|root,COG0142@2|Bacteria,4NET2@976|Bacteroidetes,1INM5@117747|Sphingobacteriia 976|Bacteroidetes H Belongs to the FPP GGPP synthase family ispB - 2.5.1.90 ko:K02523 ko00900,ko01110,map00900,map01110 - R09248 RC00279 ko00000,ko00001,ko01000,ko01006 - - - polyprenyl_synt DYD3_k127_6262889_0 700598.Niako_5113 2.445e-275 854.0 COG2885@1|root,COG2885@2|Bacteria,4NIV8@976|Bacteroidetes,1IXGD@117747|Sphingobacteriia 976|Bacteroidetes M OmpA MotB domain protein - - - ko:K03286 - - - - ko00000,ko02000 1.B.6 - - OmpA DYD3_k127_6262889_2 700598.Niako_5112 7.19e-130 419.0 COG4105@1|root,COG4105@2|Bacteria,4NJ5A@976|Bacteroidetes,1IPXN@117747|Sphingobacteriia 976|Bacteroidetes S outer membrane assembly lipoprotein YfiO yfiO - - ko:K05807 - - - - ko00000,ko02000 1.B.33.1 - - YfiO DYD3_k127_6262889_4 385682.AFSL01000084_gene1091 6.624e-30 122.0 2CT4B@1|root,32SSJ@2|Bacteria,4NQ76@976|Bacteroidetes,2FTC9@200643|Bacteroidia,3XK94@558415|Marinilabiliaceae 976|Bacteroidetes S RNA polymerase Rpb6 rpoZ - - - - - - - - - - - RNA_pol_Rpb6 DYD3_k127_6262889_1 700598.Niako_5110 5.566e-205 642.0 COG0452@1|root,COG0452@2|Bacteria,4NE46@976|Bacteroidetes,1IPJR@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine coaBC - 4.1.1.36,6.3.2.5 ko:K13038 ko00770,ko01100,map00770,map01100 M00120 R03269,R04231 RC00064,RC00090,RC00822 ko00000,ko00001,ko00002,ko01000 - - - DFP,Flavoprotein DYD3_k127_6264585_1 1121904.ARBP01000036_gene2111 1.123e-62 232.0 COG2244@1|root,COG2244@2|Bacteria,4NINR@976|Bacteroidetes,47K6C@768503|Cytophagia 976|Bacteroidetes S Polysaccharide biosynthesis protein - - - - - - - - - - - - Polysacc_synt_3,Polysacc_synt_C DYD3_k127_6264585_0 1185876.BN8_01818 7.887e-69 246.0 COG1442@1|root,COG1442@2|Bacteria,4NGMZ@976|Bacteroidetes,47K2V@768503|Cytophagia 976|Bacteroidetes M glycosyl transferase family 8 - - - - - - - - - - - - - DYD3_k127_6264585_2 700598.Niako_2074 7.559e-13 69.0 2DVQJ@1|root,32UZZ@2|Bacteria,4PGTB@976|Bacteroidetes,1IUA6@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6286742_1 1267211.KI669560_gene314 4.398e-35 147.0 COG3209@1|root,COG3209@2|Bacteria,4NE5D@976|Bacteroidetes 976|Bacteroidetes M RHS repeat-associated core domain - - - - - - - - - - - - - DYD3_k127_6286742_0 1122605.KB893643_gene558 2.642e-187 591.0 COG3669@1|root,COG3669@2|Bacteria,4NEAP@976|Bacteroidetes,1IPR6@117747|Sphingobacteriia 976|Bacteroidetes G Alpha-L-fucosidase - - 3.2.1.51 ko:K01206 ko00511,map00511 - - - ko00000,ko00001,ko01000,ko04147 - GH29 - Alpha_L_fucos,Fucosidase_C DYD3_k127_6287906_0 1123277.KB893180_gene2339 2.119e-30 138.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NK8Q@976|Bacteroidetes,47KVN@768503|Cytophagia 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_6291882_0 700598.Niako_6642 0.0 1032.0 COG1472@1|root,COG1680@1|root,COG1472@2|Bacteria,COG1680@2|Bacteria,4NET8@976|Bacteroidetes,1IRDG@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycosyl hydrolase family 3 N terminal domain - - - - - - - - - - - - Beta-lactamase,Glyco_hydro_3,Glyco_hydro_3_C DYD3_k127_6291882_2 269798.CHU_3841 2.118e-09 62.0 COG2010@1|root,COG2010@2|Bacteria,4NSUK@976|Bacteroidetes,47R5S@768503|Cytophagia 976|Bacteroidetes C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - Cytochrome_CBB3,SirB DYD3_k127_6291882_1 700598.Niako_6641 8.131e-94 310.0 COG0323@1|root,COG0323@2|Bacteria,4NDWJ@976|Bacteroidetes,1IPN2@117747|Sphingobacteriia 976|Bacteroidetes L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C DYD3_k127_6295861_2 743722.Sph21_4829 7.236e-13 71.0 COG2197@1|root,COG2197@2|Bacteria,4NNEU@976|Bacteroidetes,1J05I@117747|Sphingobacteriia 976|Bacteroidetes K response regulator, receiver - - - - - - - - - - - - GerE,Response_reg DYD3_k127_6295861_1 1122605.KB893631_gene3966 8.819e-145 486.0 COG0457@1|root,COG4585@1|root,COG0457@2|Bacteria,COG4585@2|Bacteria,4NI1V@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_10,TPR_12 DYD3_k127_6295861_0 1185876.BN8_01424 1.747e-193 615.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_6296752_1 700598.Niako_6856 2.855e-138 451.0 COG4219@1|root,COG4219@2|Bacteria,4PKZS@976|Bacteroidetes,1IR4A@117747|Sphingobacteriia 976|Bacteroidetes KT Gliding motility-associated protein GldM gldM - - - - - - - - - - - GldM_C,GldM_N DYD3_k127_6296752_2 700598.Niako_6855 8.294e-133 426.0 28IG3@1|root,2Z8HM@2|Bacteria,4NFJR@976|Bacteroidetes,1ISRG@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM gliding motility-associated protein GldL gldL - - - - - - - - - - - - DYD3_k127_6296752_0 700598.Niako_6854 4.841e-269 831.0 COG1262@1|root,COG1262@2|Bacteria,4NGY2@976|Bacteroidetes,1IP8A@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Formylglycine-generating sulfatase enzyme gldK - - - - - - - - - - - FGE-sulfatase DYD3_k127_6296752_3 700598.Niako_6853 5.914e-45 166.0 COG1331@1|root,COG1331@2|Bacteria,4NFE2@976|Bacteroidetes,1IQ72@117747|Sphingobacteriia 976|Bacteroidetes O COG1331 Highly conserved protein containing a thioredoxin domain - - - ko:K06888 - - - - ko00000 - - - GlcNAc_2-epim,Thioredox_DsbH DYD3_k127_6303608_5 1123248.KB893324_gene1687 3.944e-17 81.0 COG0526@1|root,COG0526@2|Bacteria,4PKQI@976|Bacteroidetes,1ITPA@117747|Sphingobacteriia 976|Bacteroidetes O Thioredoxin - - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin DYD3_k127_6303608_6 1178825.ALIH01000019_gene1250 3.745e-05 46.0 COG2391@1|root,COG2391@2|Bacteria,4NQ9C@976|Bacteroidetes,1I29E@117743|Flavobacteriia 976|Bacteroidetes S transporter - - - ko:K07112 - - - - ko00000 - - - Sulf_transp DYD3_k127_6303608_4 700598.Niako_6523 2.113e-29 118.0 COG2391@1|root,COG2391@2|Bacteria,4NQ9C@976|Bacteroidetes,1IS9I@117747|Sphingobacteriia 976|Bacteroidetes S PFAM YeeE YedE family (DUF395) - - - ko:K07112 - - - - ko00000 - - - Sulf_transp DYD3_k127_6303608_2 700598.Niako_6524 2.491e-90 302.0 COG1416@1|root,COG1416@2|Bacteria,4NH85@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6303608_0 700598.Niako_6525 5.309e-130 424.0 COG3258@1|root,COG3258@2|Bacteria,4NGIH@976|Bacteroidetes,1IRZ3@117747|Sphingobacteriia 976|Bacteroidetes C Cytochrome C oxidase, cbb3-type, subunit III - - 1.8.2.2 ko:K19713 - - - - ko00000,ko01000 - - - Cytochrom_C,Cytochrome_CBB3 DYD3_k127_6303608_3 700598.Niako_6526 4.889e-42 158.0 COG1416@1|root,COG1416@2|Bacteria,4NUNC@976|Bacteroidetes,1IUMY@117747|Sphingobacteriia 976|Bacteroidetes S PFAM DsrE DsrF-like family - - - ko:K09004 - - - - ko00000 - - - DrsE DYD3_k127_6303608_1 700598.Niako_6527 4.466e-115 376.0 COG1612@1|root,COG1612@2|Bacteria,4NIT1@976|Bacteroidetes,1IQDH@117747|Sphingobacteriia 976|Bacteroidetes O protein required for cytochrome oxidase assembly ctaA - - ko:K02259 ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714 M00154 R07412 RC00769 ko00000,ko00001,ko00002,ko03029 3.D.4.4 - - COX15-CtaA DYD3_k127_6305014_1 929562.Emtol_4300 2.81e-95 317.0 COG1083@1|root,COG1083@2|Bacteria,4NNJ8@976|Bacteroidetes,47SHM@768503|Cytophagia 976|Bacteroidetes M Cytidylyltransferase - - 2.7.7.43 ko:K00983 ko00520,ko01100,map00520,map01100 - R01117,R04215 RC00152 ko00000,ko00001,ko01000 - - - CTP_transf_3 DYD3_k127_6305014_0 929562.Emtol_4299 4.603e-124 405.0 COG0111@1|root,COG0111@2|Bacteria,4NDVN@976|Bacteroidetes 976|Bacteroidetes EH D-isomer specific 2-hydroxyacid dehydrogenase - - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C DYD3_k127_6305014_2 929562.Emtol_4298 2.218e-88 299.0 COG1028@1|root,COG1028@2|Bacteria,4NKYV@976|Bacteroidetes 976|Bacteroidetes IQ Oxidoreductase, short chain dehydrogenase reductase family protein - - - - - - - - - - - - adh_short_C2 DYD3_k127_6305014_4 1148.1653138 4.552e-50 188.0 COG2604@1|root,COG2604@2|Bacteria 2|Bacteria S Protein of unknown function DUF115 - - - - - - - - - - - - AbfB,DUF2920,MAF_flag10 DYD3_k127_6305014_3 269798.CHU_0852 1.917e-84 290.0 COG1216@1|root,COG1216@2|Bacteria,4NIW6@976|Bacteroidetes,47XZJ@768503|Cytophagia 976|Bacteroidetes S Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD3_k127_6305014_6 228410.NE2021 7.591e-08 57.0 COG0438@1|root,COG0438@2|Bacteria,1PKT4@1224|Proteobacteria,2VKJN@28216|Betaproteobacteria 28216|Betaproteobacteria H Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 DYD3_k127_6307140_0 700598.Niako_0405 5.336e-149 475.0 COG0405@1|root,COG0405@2|Bacteria,4NF2H@976|Bacteroidetes,1IP46@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Gamma-glutamyltranspeptidase ggt - 2.3.2.2,3.4.19.13 ko:K00681 ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100 - R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935 RC00064,RC00090,RC00096 ko00000,ko00001,ko01000,ko01002 - - - G_glu_transpept DYD3_k127_6307140_1 700598.Niako_0404 2.756e-77 262.0 COG2318@1|root,COG2318@2|Bacteria,4NMJ9@976|Bacteroidetes,1IRU4@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1572) - - - - - - - - - - - - DUF1572 DYD3_k127_6307140_2 700598.Niako_1934 1.409e-21 98.0 2DZKQ@1|root,32VDA@2|Bacteria,4NSEZ@976|Bacteroidetes,1ITDV@117747|Sphingobacteriia 976|Bacteroidetes S Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - - DYD3_k127_6308362_1 1500259.JQLD01000001_gene4191 4.207e-30 125.0 COG5637@1|root,COG5637@2|Bacteria,1MZY2@1224|Proteobacteria,2UCNC@28211|Alphaproteobacteria,4BEWI@82115|Rhizobiaceae 28211|Alphaproteobacteria S polyketide cyclase - - - - - - - - - - - - Polyketide_cyc2 DYD3_k127_6308362_0 1121481.AUAS01000009_gene52 7.781e-49 179.0 COG0454@1|root,COG0456@2|Bacteria,4NXRM@976|Bacteroidetes,47R7C@768503|Cytophagia 976|Bacteroidetes K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 DYD3_k127_6313187_0 1123248.KB893335_gene2877 1.344e-177 561.0 COG2141@1|root,COG2141@2|Bacteria,4NHGI@976|Bacteroidetes,1IP82@117747|Sphingobacteriia 976|Bacteroidetes C COGs COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase yhbW - - - - - - - - - - - Bac_luciferase DYD3_k127_6313187_2 880071.Fleli_0798 1.747e-49 185.0 COG5263@1|root,COG5263@2|Bacteria,4NH3Z@976|Bacteroidetes 976|Bacteroidetes S repeat protein - - - - - - - - - - - - WG_beta_rep DYD3_k127_6313187_1 1235803.C825_02779 4.448e-112 372.0 COG4804@1|root,COG4804@2|Bacteria,4NE0Q@976|Bacteroidetes,2FN3T@200643|Bacteroidia,22WZQ@171551|Porphyromonadaceae 976|Bacteroidetes S Protein of unknown function (DUF1016) - - - - - - - - - - - - DUF1016 DYD3_k127_631367_1 700598.Niako_7257 1.161e-220 696.0 COG4198@1|root,COG4198@2|Bacteria,4NGWT@976|Bacteroidetes,1IR8Q@117747|Sphingobacteriia 976|Bacteroidetes S Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_631367_0 700598.Niako_7256 3.256e-269 840.0 COG4206@1|root,COG4774@1|root,COG4206@2|Bacteria,COG4774@2|Bacteria,4NFRU@976|Bacteroidetes,1INW7@117747|Sphingobacteriia 976|Bacteroidetes H PFAM TonB-dependent Receptor Plug - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6322593_0 929713.NIASO_08125 2.765e-167 539.0 COG3119@1|root,COG3119@2|Bacteria,4NEM3@976|Bacteroidetes,1IQ0R@117747|Sphingobacteriia 976|Bacteroidetes P PFAM sulfatase - - - - - - - - - - - - DUF4976,Sulfatase DYD3_k127_6322593_2 761193.Runsl_5482 1.495e-73 258.0 COG0596@1|root,COG0596@2|Bacteria,4PM24@976|Bacteroidetes,47Y00@768503|Cytophagia 976|Bacteroidetes S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4,CMD DYD3_k127_6322593_1 269798.CHU_2065 2.198e-124 406.0 COG0665@1|root,COG0723@1|root,COG0665@2|Bacteria,COG0723@2|Bacteria,4NFT6@976|Bacteroidetes,47K86@768503|Cytophagia 976|Bacteroidetes CE FAD dependent oxidoreductase - - - - - - - - - - - - DAO,Rieske DYD3_k127_6351243_2 700598.Niako_3958 3.632e-53 187.0 COG2936@1|root,COG2936@2|Bacteria,4NFFB@976|Bacteroidetes,1IPID@117747|Sphingobacteriia 976|Bacteroidetes S PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - ko:K06978 - - - - ko00000 - - - PepX_C,Peptidase_S15 DYD3_k127_6351243_0 700598.Niako_3959 2.777e-261 827.0 COG3525@1|root,COG3525@2|Bacteria,4NE08@976|Bacteroidetes,1IWCS@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolase family 20, domain 2 - - 3.2.1.52 ko:K12373 ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142 M00079 R00022,R06004,R11316 RC00049 ko00000,ko00001,ko00002,ko01000,ko03110 - GH20 - Glyco_hydro_20,Glyco_hydro_20b DYD3_k127_6351243_1 1121481.AUAS01000007_gene942 3.579e-145 471.0 COG0671@1|root,COG0671@2|Bacteria,4NF9W@976|Bacteroidetes,47JAV@768503|Cytophagia 976|Bacteroidetes I PAP2 superfamily - - - - - - - - - - - - PAP2 DYD3_k127_6351243_3 1123278.KB893554_gene3945 2.5e-24 105.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,47MQH@768503|Cytophagia 976|Bacteroidetes S ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_6361910_3 762903.Pedsa_2315 1.352e-42 158.0 COG1134@1|root,COG1134@2|Bacteria,4NEDM@976|Bacteroidetes,1IPVR@117747|Sphingobacteriia 976|Bacteroidetes GM COG1134 ABC-type polysaccharide polyol phosphate transport system, ATPase component rfbB - - ko:K01990,ko:K09691 ko02010,map02010 M00250,M00254 - - ko00000,ko00001,ko00002,ko02000 3.A.1,3.A.1.103 - - ABC_tran,Wzt_C DYD3_k127_6361910_0 1123248.KB893314_gene3367 1.237e-119 390.0 COG1682@1|root,COG1682@2|Bacteria,4NF36@976|Bacteroidetes,1IRBJ@117747|Sphingobacteriia 976|Bacteroidetes GM COG1682 ABC-type polysaccharide polyol phosphate export systems, permease component - - - ko:K09690 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC2_membrane DYD3_k127_6361910_1 700598.Niako_6746 3.391e-88 299.0 COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,4NEXU@976|Bacteroidetes 976|Bacteroidetes DM Chain length determinant protein - - - - - - - - - - - - AAA_31,CbiA,GNVR,Wzz DYD3_k127_6365827_9 485918.Cpin_0700 7.809e-07 59.0 2ATWF@1|root,31JFP@2|Bacteria,4NQPB@976|Bacteroidetes,1ITBA@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6365827_3 700598.Niako_2303 1.049e-75 263.0 COG0589@1|root,COG0589@2|Bacteria,4NHBB@976|Bacteroidetes,1IU5A@117747|Sphingobacteriia 976|Bacteroidetes T COG0589 Universal stress protein UspA and related nucleotide-binding - - - - - - - - - - - - Usp DYD3_k127_6365827_1 761193.Runsl_5615 1.044e-188 600.0 COG0427@1|root,COG0427@2|Bacteria,4NFS3@976|Bacteroidetes,47M24@768503|Cytophagia 976|Bacteroidetes C PFAM Acetyl-CoA hydrolase transferase - - - - - - - - - - - - AcetylCoA_hyd_C,AcetylCoA_hydro DYD3_k127_6365827_2 700598.Niako_1905 8.394e-92 309.0 COG0589@1|root,COG0589@2|Bacteria,4P0ZU@976|Bacteroidetes,1IW67@117747|Sphingobacteriia 976|Bacteroidetes T response to stress - - - - - - - - - - - - - DYD3_k127_6365827_5 700598.Niako_4252 1.04e-62 221.0 COG2353@1|root,COG2353@2|Bacteria,4NQKY@976|Bacteroidetes,1IT9I@117747|Sphingobacteriia 976|Bacteroidetes S PFAM YceI-like domain - - - - - - - - - - - - YceI DYD3_k127_6365827_0 700598.Niako_4251 4.832e-194 614.0 2DBAQ@1|root,2Z848@2|Bacteria,4NFR9@976|Bacteroidetes,1INQ0@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6365827_7 700598.Niako_4250 8.18e-47 175.0 COG2353@1|root,COG2353@2|Bacteria,4NTB0@976|Bacteroidetes,1IT3R@117747|Sphingobacteriia 976|Bacteroidetes S PFAM YceI-like domain - - - - - - - - - - - - YceI DYD3_k127_6365827_6 700598.Niako_4649 9.933e-53 189.0 29EC5@1|root,301A4@2|Bacteria,4NP7Z@976|Bacteroidetes,1ISJ2@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6365827_4 700598.Niako_1892 7.21e-72 252.0 COG0589@1|root,COG0589@2|Bacteria,4NI7R@976|Bacteroidetes,1INVG@117747|Sphingobacteriia 976|Bacteroidetes T response to stress - - - - - - - - - - - - Usp DYD3_k127_6365827_8 391596.PBAL39_25375 2.665e-09 61.0 COG4420@1|root,COG4420@2|Bacteria,4NH74@976|Bacteroidetes,1ISB9@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1003) - - - - - - - - - - - - DUF1003 DYD3_k127_6366903_0 929713.NIASO_05040 1.075e-25 119.0 COG4585@1|root,COG4585@2|Bacteria,4NI65@976|Bacteroidetes,1INUH@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_12,TPR_8 DYD3_k127_6373870_0 926549.KI421517_gene1647 9.976e-300 936.0 COG2010@1|root,COG2010@2|Bacteria,4NEZ5@976|Bacteroidetes,47JIJ@768503|Cytophagia 976|Bacteroidetes C Membrane-bound dehydrogenase domain protein - - - - - - - - - - - - Cytochrome_CBB3 DYD3_k127_6373870_2 641524.ADICYQ_0475 3.692e-215 676.0 COG0673@1|root,COG0673@2|Bacteria,4NH96@976|Bacteroidetes,47M0H@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_6373870_1 929562.Emtol_1151 6.947e-248 770.0 COG4225@1|root,COG4225@2|Bacteria,4NJYK@976|Bacteroidetes,47MFS@768503|Cytophagia 976|Bacteroidetes S Glycosyl Hydrolase Family 88 - - 3.2.1.180 ko:K18581 - - R10867 RC00049,RC02427 ko00000,ko01000 - GH88 - Glyco_hydro_88 DYD3_k127_6373870_3 760192.Halhy_3735 2.363e-120 391.0 COG1082@1|root,COG1082@2|Bacteria,4NHJE@976|Bacteroidetes,1IWGQ@117747|Sphingobacteriia 976|Bacteroidetes G Xylose isomerase-like TIM barrel - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_6377805_2 504472.Slin_3156 3.556e-33 133.0 COG1597@1|root,COG1597@2|Bacteria,4NJ68@976|Bacteroidetes,47MQA@768503|Cytophagia 976|Bacteroidetes I PFAM Diacylglycerol kinase, catalytic - - - - - - - - - - - - DAGK_acc,DAGK_cat DYD3_k127_6377805_1 485917.Phep_4163 2.7e-110 366.0 COG4850@1|root,COG4850@2|Bacteria,4NFZ6@976|Bacteroidetes,1IT86@117747|Sphingobacteriia 976|Bacteroidetes S Uncharacterized conserved protein (DUF2183) - - - - - - - - - - - - DUF2183 DYD3_k127_6377805_0 509635.N824_03700 1.015e-198 631.0 COG1506@1|root,COG1506@2|Bacteria,4NE2Q@976|Bacteroidetes,1IQRG@117747|Sphingobacteriia 976|Bacteroidetes E peptidase S9 - - - - - - - - - - - - DPPIV_N,Peptidase_S9 DYD3_k127_6381483_3 700598.Niako_6068 7.311e-69 236.0 COG3568@1|root,COG3568@2|Bacteria,4NGUV@976|Bacteroidetes,1IPS5@117747|Sphingobacteriia 976|Bacteroidetes S endonuclease exonuclease phosphatase - - - - - - - - - - - - Exo_endo_phos DYD3_k127_6381483_0 700598.Niako_6067 1.322e-272 844.0 COG0215@1|root,COG0215@2|Bacteria,4NE3Y@976|Bacteroidetes,1INZ2@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class-I aminoacyl-tRNA synthetase family cysS GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 ko:K01883 ko00970,map00970 M00359,M00360 R03650 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_2,tRNA-synt_1e DYD3_k127_6381483_2 700598.Niako_6066 1.122e-70 245.0 COG4121@1|root,COG4121@2|Bacteria,4NE5S@976|Bacteroidetes,1IRZT@117747|Sphingobacteriia 976|Bacteroidetes S S-adenosyl-L-methionine-dependent methyltransferase mnmC - - - - - - - - - - - Methyltransf_30 DYD3_k127_6381483_1 700598.Niako_6065 3.315e-99 329.0 COG0122@1|root,COG0122@2|Bacteria,4NMMI@976|Bacteroidetes,1IU7D@117747|Sphingobacteriia 976|Bacteroidetes L PFAM HhH-GPD superfamily base excision DNA repair protein - - 3.2.2.21 ko:K01247 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD DYD3_k127_6381483_4 700598.Niako_6196 5.036e-58 201.0 COG3591@1|root,COG3591@2|Bacteria,4NEAK@976|Bacteroidetes,1IPZY@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase S46 dpp7 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - - - - - - - - - - Peptidase_S46 DYD3_k127_6381485_0 1168289.AJKI01000040_gene3170 0.0 1107.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,2FM2D@200643|Bacteroidia,3XM0Z@558415|Marinilabiliaceae 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_6381485_1 1121481.AUAS01000002_gene3290 7.786e-272 848.0 COG1435@1|root,COG1435@2|Bacteria,4NE0S@976|Bacteroidetes,47V7D@768503|Cytophagia 976|Bacteroidetes F Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_6381485_3 1121481.AUAS01000002_gene3289 2.305e-76 263.0 2DC1C@1|root,2ZCDH@2|Bacteria,4NMEB@976|Bacteroidetes,47WI5@768503|Cytophagia 976|Bacteroidetes S Protein of unknown function (DUF3823) - - - - - - - - - - - - DUF3823 DYD3_k127_6381485_2 509635.N824_27600 1.11e-195 619.0 COG2503@1|root,COG2503@2|Bacteria,4PN2E@976|Bacteroidetes 976|Bacteroidetes G Alpha-1,2-mannosidase - - - - - - - - - - - - - DYD3_k127_6381485_4 1218075.BAYA01000004_gene1616 8.717e-14 80.0 COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria,1MVMG@1224|Proteobacteria,2VH3M@28216|Betaproteobacteria,1K03X@119060|Burkholderiaceae 28216|Betaproteobacteria O Tetratricopeptide TPR_2 repeat protein - - - - - - - - - - - - Glyco_transf_41,SEC-C,TPR_16,TPR_2,TPR_8 DYD3_k127_6381485_5 1292020.H483_0108630 2.884e-06 50.0 COG4585@1|root,COG4585@2|Bacteria,2GJ4J@201174|Actinobacteria 201174|Actinobacteria T Histidine kinase tcsS3 - - - - - - - - - - - HATPase_c,HATPase_c_2,PspC DYD3_k127_6382887_0 269798.CHU_1728 4.738e-68 244.0 COG2885@1|root,COG2885@2|Bacteria,4NECX@976|Bacteroidetes,47NDN@768503|Cytophagia 976|Bacteroidetes M chlorophyll binding - - - - - - - - - - - - - DYD3_k127_6382887_1 929713.NIASO_09425 6.335e-35 134.0 COG4281@1|root,COG4281@2|Bacteria,4NVK0@976|Bacteroidetes 976|Bacteroidetes I Acyl-coA-binding protein - - - - - - - - - - - - ACBP DYD3_k127_6382887_2 682795.AciX8_4119 6.34e-06 57.0 COG0457@1|root,COG1807@1|root,COG0457@2|Bacteria,COG1807@2|Bacteria,3Y2T0@57723|Acidobacteria,2JIGT@204432|Acidobacteriia 204432|Acidobacteriia M PFAM glycosyl transferase family 39 - - - - - - - - - - - - PMT_2 DYD3_k127_6394074_3 1304866.K413DRAFT_1358 1.594e-08 62.0 COG2211@1|root,COG2211@2|Bacteria,1UIHN@1239|Firmicutes,25ERR@186801|Clostridia 186801|Clostridia G Major Facilitator - - - ko:K05820 - - - - ko00000,ko02000 2.A.1.27 - - MFS_1_like DYD3_k127_6394074_2 1123278.KB893588_gene455 3.404e-72 250.0 COG0363@1|root,COG0363@2|Bacteria,4NPBJ@976|Bacteroidetes,47NRI@768503|Cytophagia 976|Bacteroidetes G Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase - - 3.5.99.6 ko:K02080,ko:K02564 ko00052,ko00520,ko01100,map00052,map00520,map01100 - R00765,R08365 RC00163 ko00000,ko00001,ko01000 - - - Glucosamine_iso DYD3_k127_6394074_1 697281.Mahau_2772 8.315e-81 282.0 COG0524@1|root,COG0524@2|Bacteria,1V4QY@1239|Firmicutes,24HRA@186801|Clostridia 186801|Clostridia G Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway - - - - - - - - - - - - PfkB DYD3_k127_6394074_0 1123248.KB893323_gene1606 2.066e-108 355.0 COG0223@1|root,COG0223@2|Bacteria,4NE8U@976|Bacteroidetes,1IPT6@117747|Sphingobacteriia 976|Bacteroidetes J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus fmt GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 ko:K00604 ko00670,ko00970,map00670,map00970 - R03940 RC00026,RC00165 ko00000,ko00001,ko01000 - - - Formyl_trans_C,Formyl_trans_N DYD3_k127_6395040_3 471854.Dfer_0756 6.615e-23 98.0 COG4941@1|root,COG4941@2|Bacteria,4NGCS@976|Bacteroidetes,47M8X@768503|Cytophagia 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_6395040_0 700598.Niako_1980 9.2e-50 179.0 COG3795@1|root,COG3795@2|Bacteria,4NQPY@976|Bacteroidetes,1IYMH@117747|Sphingobacteriia 976|Bacteroidetes S YCII-related domain - - - - - - - - - - - - YCII DYD3_k127_6395040_1 700598.Niako_5929 6.554e-34 136.0 COG5485@1|root,COG5485@2|Bacteria,4NRVH@976|Bacteroidetes,1IY53@117747|Sphingobacteriia 976|Bacteroidetes S PFAM SnoaL-like polyketide cyclase - - - - - - - - - - - - SnoaL DYD3_k127_6397338_0 929562.Emtol_1493 1.864e-171 546.0 COG1132@1|root,COG1132@2|Bacteria,4NEBS@976|Bacteroidetes,47K10@768503|Cytophagia 976|Bacteroidetes V ABC transporter - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran DYD3_k127_6397338_1 700598.Niako_5578 1.895e-68 237.0 COG5349@1|root,COG5349@2|Bacteria,4NQ87@976|Bacteroidetes,1ITU7@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF983) - - - - - - - - - - - - DUF983 DYD3_k127_6397338_2 246194.CHY_0546 2.107e-09 64.0 COG0728@1|root,COG0728@2|Bacteria,1TPFI@1239|Firmicutes,247N3@186801|Clostridia,42EMB@68295|Thermoanaerobacterales 186801|Clostridia S Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane murJ - - ko:K03980 - - - - ko00000,ko01011,ko02000 2.A.66.4 - - MVIN DYD3_k127_6402714_1 700598.Niako_4732 1.587e-138 445.0 COG2148@1|root,COG2148@2|Bacteria,4NFIA@976|Bacteroidetes,1IS31@117747|Sphingobacteriia 976|Bacteroidetes M Bacterial sugar transferase - - - - - - - - - - - - Bac_transf,CoA_binding_3 DYD3_k127_6402714_0 700598.Niako_4730 0.0 1187.0 COG0308@1|root,COG0308@2|Bacteria,4NEXH@976|Bacteroidetes,1IPHQ@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase family M1 domain - - 3.4.11.2 ko:K01256 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M1 DYD3_k127_6402714_2 700598.Niako_4729 1.649e-95 323.0 COG5653@1|root,COG5653@2|Bacteria,4NQN5@976|Bacteroidetes,1IYJZ@117747|Sphingobacteriia 976|Bacteroidetes M Protein involved in cellulose biosynthesis - - - - - - - - - - - - Acetyltransf_6 DYD3_k127_6402714_3 700598.Niako_4727 5.76e-53 189.0 COG1211@1|root,COG1211@2|Bacteria,4NMB5@976|Bacteroidetes,1ISX6@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) ispD GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 ko:K00991 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633 RC00002 ko00000,ko00001,ko00002,ko01000 - - - IspD DYD3_k127_641276_1 1410653.JHVC01000002_gene4377 0.0002209 47.0 COG1846@1|root,COG1846@2|Bacteria,1VFWY@1239|Firmicutes,25CQD@186801|Clostridia,36WZ8@31979|Clostridiaceae 186801|Clostridia K helix_turn_helix multiple antibiotic resistance protein - - - - - - - - - - - - MarR DYD3_k127_641276_0 1415780.JPOG01000001_gene1953 4.827e-118 399.0 COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,1RPIP@1236|Gammaproteobacteria,1X3P5@135614|Xanthomonadales 1236|Gammaproteobacteria T Sterol-sensing domain of SREBP cleavage-activation - - - ko:K07003 - - - - ko00000 - - - LolA_like,MMPL,Polyketide_cyc2 DYD3_k127_6415469_0 700598.Niako_2553 0.0 1083.0 COG0481@1|root,COG0481@2|Bacteria,4NEJ9@976|Bacteroidetes,1IQMU@117747|Sphingobacteriia 976|Bacteroidetes M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner lepA - - ko:K03596 ko05134,map05134 - - - ko00000,ko00001 - - - EFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C DYD3_k127_6415469_2 1408433.JHXV01000008_gene84 2.201e-15 87.0 COG0810@1|root,COG2849@1|root,COG0810@2|Bacteria,COG2849@2|Bacteria,4NW2U@976|Bacteroidetes,1IIR8@117743|Flavobacteriia 976|Bacteroidetes M Gram-negative bacterial TonB protein C-terminal - - - - - - - - - - - - MORN_2,TonB_C DYD3_k127_6415469_1 929556.Solca_0456 2.21e-31 129.0 COG1680@1|root,COG1680@2|Bacteria,4NEVS@976|Bacteroidetes,1J045@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase DYD3_k127_6430732_0 700598.Niako_0323 7.751e-206 649.0 COG1629@1|root,COG4771@2|Bacteria,4NEHN@976|Bacteroidetes,1J0SA@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent Receptor Plug Domain - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6430732_1 641524.ADICYQ_5423 2.024e-97 332.0 COG3828@1|root,COG3828@2|Bacteria,4NEWH@976|Bacteroidetes,47P36@768503|Cytophagia 976|Bacteroidetes S Methane oxygenase PmoA - - - - - - - - - - - - PmoA DYD3_k127_6436227_0 1317122.ATO12_20305 0.0 1136.0 COG4773@1|root,COG4773@2|Bacteria,4NF92@976|Bacteroidetes,1HX1U@117743|Flavobacteriia,2YI7B@290174|Aquimarina 976|Bacteroidetes P TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_dep_Rec DYD3_k127_6436227_1 929703.KE386491_gene83 2.753e-78 267.0 COG1277@1|root,COG1277@2|Bacteria,4NDY9@976|Bacteroidetes,47JBW@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF3526) - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,DUF3526 DYD3_k127_6437941_4 1227739.Hsw_1003 9.668e-06 57.0 COG2207@1|root,COG2207@2|Bacteria,4NIJV@976|Bacteroidetes,47QZ2@768503|Cytophagia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_6437941_3 1189612.A33Q_1477 4.792e-40 164.0 COG2207@1|root,COG2207@2|Bacteria,4NIJV@976|Bacteroidetes,47XFM@768503|Cytophagia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_6437941_1 1237149.C900_04761 1.527e-243 771.0 COG0366@1|root,COG4677@1|root,COG0366@2|Bacteria,COG4677@2|Bacteria,4NHFH@976|Bacteroidetes,47KN5@768503|Cytophagia 976|Bacteroidetes G Alpha amylase, catalytic domain amyS - 3.2.1.1 ko:K01176 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,DUF1939 DYD3_k127_6437941_0 1185876.BN8_01423 0.0 1157.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47M0S@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_6437941_2 313595.P700755_001739 2.923e-62 246.0 COG2207@1|root,COG2207@2|Bacteria,4NIJV@976|Bacteroidetes,1HZK0@117743|Flavobacteriia 976|Bacteroidetes K AraC family - - - - - - - - - - - - HTH_18 DYD3_k127_6442858_5 1267211.KI669560_gene158 2.552e-79 269.0 COG0115@1|root,COG0115@2|Bacteria,4NI83@976|Bacteroidetes,1IPAA@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family ilvE - 2.6.1.42 ko:K00826 ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R10991 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 DYD3_k127_6442858_1 700598.Niako_0102 3.287e-315 970.0 COG0129@1|root,COG0129@2|Bacteria,4NFHP@976|Bacteroidetes,1IPT9@117747|Sphingobacteriia 976|Bacteroidetes EG Belongs to the IlvD Edd family ilvD - 4.2.1.9 ko:K01687 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R01209,R04441,R05070 RC00468,RC01714 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD DYD3_k127_6442858_0 700598.Niako_0103 6.407e-318 979.0 COG0028@1|root,COG0028@2|Bacteria,4NENG@976|Bacteroidetes,1IPTP@117747|Sphingobacteriia 976|Bacteroidetes EH Acetolactate synthase, large subunit ilvB - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N DYD3_k127_6442858_4 700598.Niako_0105 5.897e-100 328.0 COG0440@1|root,COG0440@2|Bacteria,4NIDK@976|Bacteroidetes,1IP7C@117747|Sphingobacteriia 976|Bacteroidetes E synthase small subunit ilvH - 2.2.1.6 ko:K01653 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - ACT,ACT_5,ALS_ss_C DYD3_k127_6442858_2 700598.Niako_0106 3.141e-222 690.0 COG0059@1|root,COG0059@2|Bacteria,4NFYV@976|Bacteroidetes,1IQ69@117747|Sphingobacteriia 976|Bacteroidetes EH Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate ilvC - 1.1.1.86 ko:K00053 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R03051,R04439,R04440,R05068,R05069,R05071 RC00726,RC00836,RC00837,RC01726 ko00000,ko00001,ko00002,ko01000 - - - IlvC,IlvN DYD3_k127_6442858_3 700598.Niako_0107 7.593e-210 656.0 COG1171@1|root,COG1171@2|Bacteria,4NEY2@976|Bacteroidetes,1INNU@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA ilvA - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - PALP,Thr_dehydrat_C DYD3_k127_6452510_0 700598.Niako_7306 9.638e-191 606.0 COG3291@1|root,COG3291@2|Bacteria,4NJ47@976|Bacteroidetes,1IPFX@117747|Sphingobacteriia 976|Bacteroidetes N C-terminal domain of CHU protein family - - - - - - - - - - - - CHU_C,PKD,SBBP DYD3_k127_6452510_3 1123278.KB893604_gene1950 5.002e-13 79.0 2DDND@1|root,2ZINU@2|Bacteria,4P918@976|Bacteroidetes,47WTG@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6452510_2 760192.Halhy_4984 6.011e-19 92.0 2BYVD@1|root,33GV2@2|Bacteria,4P95P@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6452510_1 1185876.BN8_02269 8.571e-179 571.0 COG1228@1|root,COG1228@2|Bacteria,4NEV0@976|Bacteroidetes,47MH5@768503|Cytophagia 976|Bacteroidetes Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 DYD3_k127_6453849_3 1267211.KI669560_gene649 5.735e-08 55.0 COG1011@1|root,COG1011@2|Bacteria,4NQT8@976|Bacteroidetes,1IS3Y@117747|Sphingobacteriia 976|Bacteroidetes S HAD-superfamily hydrolase subfamily IA, variant 3 yihX - 3.1.3.10 ko:K20866 ko00010,ko01120,map00010,map01120 - R00947 RC00078 ko00000,ko00001,ko01000 - - - HAD_2 DYD3_k127_6453849_2 485917.Phep_3641 2.325e-101 336.0 COG4099@1|root,COG4099@2|Bacteria,4NFSH@976|Bacteroidetes,1IR5D@117747|Sphingobacteriia 976|Bacteroidetes S Phospholipase/Carboxylesterase - - - - - - - - - - - - Abhydrolase_2,Esterase,Peptidase_S9 DYD3_k127_6453849_0 760192.Halhy_3165 2.034e-207 656.0 COG3119@1|root,COG3119@2|Bacteria,4NHH7@976|Bacteroidetes,1IQY0@117747|Sphingobacteriia 976|Bacteroidetes P sulfatase mdsA - - - - - - - - - - - DUF4976,Sulfatase DYD3_k127_6453849_1 1123057.P872_12550 5.799e-112 363.0 COG1472@1|root,COG1472@2|Bacteria,4NE90@976|Bacteroidetes,47JBR@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 3 family bglX - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C DYD3_k127_6456570_4 1121481.AUAS01000008_gene2970 6.545e-71 247.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,47Y5V@768503|Cytophagia 976|Bacteroidetes P PFAM TonB-dependent Receptor Plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6456570_2 700598.Niako_5258 2.079e-149 477.0 COG0329@1|root,COG0329@2|Bacteria,4NF2Z@976|Bacteroidetes,1IQRX@117747|Sphingobacteriia 976|Bacteroidetes EM Belongs to the DapA family - - 3.5.4.22,4.3.3.7 ko:K01714,ko:K21062 ko00261,ko00300,ko00330,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map00330,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R02280,R10147 RC00679,RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS DYD3_k127_6456570_0 485918.Cpin_5572 4.363e-195 611.0 COG3938@1|root,COG3938@2|Bacteria,4NHJZ@976|Bacteroidetes,1INXZ@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the proline racemase family - - 5.1.1.8 ko:K12658 ko00330,map00330 - R03296 RC00479 ko00000,ko00001,ko01000 - - - Pro_racemase DYD3_k127_6456570_1 485918.Cpin_5571 8.208e-183 581.0 COG0665@1|root,COG0665@2|Bacteria,4NEUE@976|Bacteroidetes,1IPI3@117747|Sphingobacteriia 976|Bacteroidetes E PFAM FAD dependent oxidoreductase dadA - 1.4.5.1 ko:K00285 ko00360,map00360 - R01374,R09493 RC00006,RC00025 ko00000,ko00001,ko01000 - - - DAO DYD3_k127_6456570_3 700598.Niako_5257 5.355e-117 384.0 COG4805@1|root,COG4805@2|Bacteria,4NFAK@976|Bacteroidetes,1IRKR@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Bacterial protein of - - - - - - - - - - - - DUF885 DYD3_k127_6461049_1 700598.Niako_6099 7.478e-97 317.0 COG0195@1|root,COG0195@2|Bacteria,4NFGA@976|Bacteroidetes,1IQJC@117747|Sphingobacteriia 976|Bacteroidetes K Participates in both transcription termination and antitermination nusA - - ko:K02600 - - - - ko00000,ko03009,ko03021 - - - KH_5,NusA_N,S1 DYD3_k127_6461049_0 925409.KI911562_gene646 0.0 1150.0 COG0532@1|root,COG0532@2|Bacteria,4NGP3@976|Bacteroidetes,1IQ0V@117747|Sphingobacteriia 976|Bacteroidetes J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex infB - - ko:K02519 - - - - ko00000,ko03012,ko03029 - - - GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N DYD3_k127_6462058_3 485917.Phep_2084 1.409e-111 362.0 COG1233@1|root,COG1233@2|Bacteria,4NF31@976|Bacteroidetes,1IR8I@117747|Sphingobacteriia 976|Bacteroidetes Q COG1233 Phytoene dehydrogenase and related pys - - - - - - - - - - - Amino_oxidase,NAD_binding_8 DYD3_k127_6462058_0 485917.Phep_2085 3.662e-185 586.0 COG2855@1|root,COG2855@2|Bacteria,4NES6@976|Bacteroidetes,1IQMA@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Uncharacterised protein family UPF0324 - - - - - - - - - - - - Cons_hypoth698 DYD3_k127_6462058_1 700598.Niako_1510 6.741e-150 478.0 COG4989@1|root,COG4989@2|Bacteria,4NENV@976|Bacteroidetes,1IR0A@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Aldo keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD3_k127_6462058_2 700598.Niako_4480 4.242e-136 445.0 COG3291@1|root,COG3291@2|Bacteria,4NPDM@976|Bacteroidetes,1IW61@117747|Sphingobacteriia 976|Bacteroidetes G PFAM PKD domain - - - - - - - - - - - - CHU_C,PKD DYD3_k127_6465269_4 1034807.FBFL15_2432 7.527e-35 137.0 COG1670@1|root,COG1670@2|Bacteria,4NTJQ@976|Bacteroidetes,1I9IW@117743|Flavobacteriia,2NXBR@237|Flavobacterium 976|Bacteroidetes J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_3 DYD3_k127_6465269_1 1121007.AUML01000031_gene2710 9.941e-57 200.0 COG0346@1|root,COG0346@2|Bacteria,4NNKT@976|Bacteroidetes,1I203@117743|Flavobacteriia 976|Bacteroidetes E lactoylglutathione lyase activity - - - - - - - - - - - - Glyoxalase DYD3_k127_6465269_0 1459636.NTE_02613 1.07e-73 254.0 COG0262@1|root,arCOG01490@2157|Archaea 2157|Archaea H Belongs to the dihydrofolate reductase family - - - - - - - - - - - - RibD_C DYD3_k127_6465269_2 471854.Dfer_0828 6.869e-53 191.0 COG0454@1|root,COG0456@2|Bacteria,4NQ82@976|Bacteroidetes 976|Bacteroidetes K acetyltransferase - - - - - - - - - - - - Acetyltransf_1 DYD3_k127_6465269_3 1121890.AUDO01000006_gene1308 7.993e-49 190.0 COG1816@1|root,COG1816@2|Bacteria,4NG5W@976|Bacteroidetes,1IIAJ@117743|Flavobacteriia,2NSQD@237|Flavobacterium 976|Bacteroidetes F adenosine add - 3.5.4.4 ko:K01488,ko:K19572 ko00230,ko01100,ko05340,map00230,map01100,map05340 - R01560,R02556 RC00477 ko00000,ko00001,ko01000 - - - A_deaminase DYD3_k127_6467318_2 1173026.Glo7428_2204 6.324e-31 123.0 COG0784@1|root,COG0784@2|Bacteria,1GQ4W@1117|Cyanobacteria 1117|Cyanobacteria T PFAM response regulator receiveR - - - - - - - - - - - - Response_reg DYD3_k127_6467318_1 700598.Niako_2730 1.72e-70 257.0 COG2202@1|root,COG2204@1|root,COG4585@1|root,COG2202@2|Bacteria,COG2204@2|Bacteria,COG4585@2|Bacteria,4NK7B@976|Bacteroidetes,1IW3P@117747|Sphingobacteriia 976|Bacteroidetes T signal transduction histidine kinase - - 2.7.13.3 ko:K07675 ko02020,map02020 M00473 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA_3,PAS_3,PAS_4,PAS_9,Response_reg DYD3_k127_6467318_0 700598.Niako_4796 1.813e-146 471.0 COG0673@1|root,COG0673@2|Bacteria,4NE07@976|Bacteroidetes,1J1A7@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase family, C-terminal alpha beta domain gfo_1 - 1.1.1.384 ko:K13327 ko00523,ko01130,map00523,map01130 M00801,M00802 R05526 RC00897 ko00000,ko00001,ko00002,ko01000 - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_6477263_1 700598.Niako_7212 1.987e-66 227.0 COG0377@1|root,COG0377@2|Bacteria,4NHZ2@976|Bacteroidetes,1IQCF@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoB - 1.6.5.3 ko:K00331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q6 DYD3_k127_6477263_2 700598.Niako_7213 1.032e-64 226.0 COG0852@1|root,COG0852@2|Bacteria,4NPGA@976|Bacteroidetes,1ISCW@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00332 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_30kDa DYD3_k127_6477263_0 700598.Niako_7214 2.106e-127 409.0 COG0649@1|root,COG0649@2|Bacteria,4NF02@976|Bacteroidetes,1IR1E@117747|Sphingobacteriia 976|Bacteroidetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoC - 1.6.5.3 ko:K00333,ko:K13378 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_30kDa,Complex1_49kDa,NiFeSe_Hases DYD3_k127_6503977_6 929556.Solca_3984 1.79e-15 76.0 COG0008@1|root,COG0008@2|Bacteria,4NEED@976|Bacteroidetes,1IPV4@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) gltX - 6.1.1.17 ko:K01885 ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120 M00121,M00359,M00360 R05578 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016 - - - tRNA-synt_1c DYD3_k127_6503977_5 700598.Niako_5626 8.595e-70 238.0 COG2185@1|root,COG2185@2|Bacteria,4NNXP@976|Bacteroidetes,1ISIG@117747|Sphingobacteriia 976|Bacteroidetes I COGs COG2185 Methylmalonyl-CoA mutase C-terminal domain subunit (cobalamin-binding) - - 5.4.99.2 ko:K01849 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00375,M00376,M00741 R00833 RC00395 ko00000,ko00001,ko00002,ko01000 - - - B12-binding DYD3_k127_6503977_4 1267211.KI669560_gene1052 7.49e-112 366.0 COG1024@1|root,COG1024@2|Bacteria,4NFEM@976|Bacteroidetes,1INKY@117747|Sphingobacteriia 976|Bacteroidetes I Belongs to the enoyl-CoA hydratase isomerase family crt - 4.2.1.17 ko:K01715 ko00650,ko01200,map00650,map01200 - R03026 RC00831 ko00000,ko00001,ko01000 - - - ECH_1 DYD3_k127_6503977_3 1123248.KB893330_gene396 2.002e-141 463.0 COG4886@1|root,COG4886@2|Bacteria,4NFES@976|Bacteroidetes,1IPVN@117747|Sphingobacteriia 976|Bacteroidetes S Planctomycete cytochrome C - - - - - - - - - - - - LRR_8,PSCyt1 DYD3_k127_6503977_2 925409.KI911562_gene2229 3.715e-143 459.0 COG1082@1|root,COG1082@2|Bacteria,4NFEA@976|Bacteroidetes,1INZG@117747|Sphingobacteriia 976|Bacteroidetes G Pfam Xylose - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_6503977_1 1123248.KB893320_gene3944 1.262e-282 872.0 COG4102@1|root,COG4102@2|Bacteria,4PN6J@976|Bacteroidetes,1INVW@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1501) - - - - - - - - - - - - DUF1501 DYD3_k127_6503977_0 1123248.KB893320_gene3945 0.0 1122.0 COG2010@1|root,COG2010@2|Bacteria,4NFP6@976|Bacteroidetes,1IQMT@117747|Sphingobacteriia 976|Bacteroidetes C Protein of unknown function (DUF1553) - - - - - - - - - - - - CBM_6,PSCyt1,PSCyt2,PSD1 DYD3_k127_6508725_0 700598.Niako_5604 1.098e-219 683.0 COG0317@1|root,COG0317@2|Bacteria,4NESY@976|Bacteroidetes,1IQ2F@117747|Sphingobacteriia 976|Bacteroidetes KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance relA - 2.7.6.5,3.1.7.2 ko:K00951,ko:K01139 ko00230,map00230 - R00336,R00429 RC00002,RC00078 ko00000,ko00001,ko01000,ko03009 - - - ACT_4,HD_4,RelA_SpoT,TGS DYD3_k127_6508725_1 700598.Niako_5604 9.588e-219 681.0 COG0317@1|root,COG0317@2|Bacteria,4NESY@976|Bacteroidetes,1IQ2F@117747|Sphingobacteriia 976|Bacteroidetes KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance relA - 2.7.6.5,3.1.7.2 ko:K00951,ko:K01139 ko00230,map00230 - R00336,R00429 RC00002,RC00078 ko00000,ko00001,ko01000,ko03009 - - - ACT_4,HD_4,RelA_SpoT,TGS DYD3_k127_6508725_2 1123248.KB893322_gene571 7.045e-28 113.0 COG0104@1|root,COG0104@2|Bacteria,4NGRZ@976|Bacteroidetes,1IQYP@117747|Sphingobacteriia 976|Bacteroidetes F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt DYD3_k127_6513432_0 391596.PBAL39_23402 9.673e-173 557.0 COG4773@1|root,COG4773@2|Bacteria,4NF92@976|Bacteroidetes,1IVRT@117747|Sphingobacteriia 976|Bacteroidetes P TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6513432_1 700598.Niako_6248 9.788e-125 406.0 COG3637@1|root,COG3637@2|Bacteria,4NQ11@976|Bacteroidetes,1IYEN@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl DYD3_k127_6513432_2 1123248.KB893326_gene1542 1.6e-123 402.0 COG3970@1|root,COG3970@2|Bacteria,4NGTH@976|Bacteroidetes,1IQ0W@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - 4.2.1.141 ko:K14259 ko00040,map00040 - R09186 RC00429 ko00000,ko00001,ko01000 - - - FAA_hydrolase DYD3_k127_6513432_3 504472.Slin_3322 1.616e-82 281.0 COG3257@1|root,COG3257@2|Bacteria,4NKCS@976|Bacteroidetes,47M25@768503|Cytophagia 976|Bacteroidetes L Cupin domain - - 3.5.3.26 ko:K14977 ko00230,ko01120,map00230,map01120 - R05554 RC01419 ko00000,ko00001,ko01000 - - - AraC_binding,Cupin_2 DYD3_k127_6513432_4 1056820.KB900656_gene3602 7.63e-07 55.0 COG2819@1|root,COG2819@2|Bacteria,1R54Q@1224|Proteobacteria,1SAFU@1236|Gammaproteobacteria 1236|Gammaproteobacteria S hydrolase of the alpha beta superfamily - - - ko:K07017 - - - - ko00000 - - - Esterase DYD3_k127_65267_2 485918.Cpin_2667 8.711e-12 66.0 COG0249@1|root,COG0249@2|Bacteria,4NEXA@976|Bacteroidetes,1IP1T@117747|Sphingobacteriia 976|Bacteroidetes L MutS domain III - - - - - - - - - - - - MutS_III,MutS_V DYD3_k127_65267_1 391596.PBAL39_07575 8.955e-138 451.0 COG0249@1|root,COG0249@2|Bacteria,4NEXA@976|Bacteroidetes,1IP73@117747|Sphingobacteriia 976|Bacteroidetes L MutS domain III - - - - - - - - - - - - MutS_III,MutS_V DYD3_k127_65267_0 1358423.N180_14045 2.202e-143 465.0 COG0793@1|root,COG0793@2|Bacteria,4NJAA@976|Bacteroidetes,1IVYJ@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_6560360_0 700598.Niako_0751 2.853e-165 525.0 COG3661@1|root,COG3661@2|Bacteria,4NHE2@976|Bacteroidetes,1IPVK@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 67 family aguA - 3.2.1.139 ko:K01235 - - - - ko00000,ko01000 - - - Glyco_hydro_67C,Glyco_hydro_67M,Glyco_hydro_67N DYD3_k127_6560360_2 700598.Niako_0750 5.922e-105 346.0 COG1028@1|root,COG1028@2|Bacteria,4NIH6@976|Bacteroidetes,1IQMX@117747|Sphingobacteriia 976|Bacteroidetes IQ COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) - - 1.1.1.69 ko:K00046 - - - - ko00000,ko01000 - - - adh_short_C2 DYD3_k127_6560360_1 700598.Niako_0748 4.65e-157 505.0 COG3693@1|root,COG3693@2|Bacteria,4NE5Z@976|Bacteroidetes,1IRC2@117747|Sphingobacteriia 976|Bacteroidetes G SMART glycoside hydrolase family 10 - - 3.2.1.8 ko:K01181 - - - - ko00000,ko01000 - - - Glyco_hydro_10 DYD3_k127_6560360_3 700598.Niako_3636 2.177e-09 59.0 COG1069@1|root,COG1069@2|Bacteria,4NEFQ@976|Bacteroidetes,1IQ36@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the ribulokinase family araB - 2.7.1.16 ko:K00853 ko00040,ko01100,map00040,map01100 - R01526,R02439 RC00002,RC00538 ko00000,ko00001,ko01000 - - - FGGY_C,FGGY_N DYD3_k127_6568480_0 1122605.KB893643_gene730 4.99e-77 265.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,1ITQW@117747|Sphingobacteriia 976|Bacteroidetes T COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_6569383_0 555500.I215_06612 1.804e-33 147.0 2DND1@1|root,32WUY@2|Bacteria,4NT80@976|Bacteroidetes,1I4EN@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6569383_1 700598.Niako_7179 1.85e-22 106.0 COG1396@1|root,COG1396@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - HTH_3,HTH_31 DYD3_k127_6569383_2 1122621.ATZA01000053_gene98 1.292e-19 91.0 COG1476@1|root,COG1476@2|Bacteria,4NUZG@976|Bacteroidetes,1IZBZ@117747|Sphingobacteriia 976|Bacteroidetes K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_19,HTH_26,HTH_3 DYD3_k127_6572640_4 509635.N824_15235 1.37e-75 261.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes 976|Bacteroidetes S PFAM ASPIC and UnbV - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_6572640_3 694427.Palpr_0239 7.207e-95 324.0 COG2273@1|root,COG2273@2|Bacteria,4NHP5@976|Bacteroidetes,2FP9D@200643|Bacteroidia,22XHU@171551|Porphyromonadaceae 976|Bacteroidetes G Glycoside Hydrolase - - - - - - - - - - - - BACON,Glyco_hydro_16 DYD3_k127_6572640_1 1123234.AUKI01000017_gene2713 6.403e-111 366.0 COG2273@1|root,COG2273@2|Bacteria,4P0M2@976|Bacteroidetes,1I8B0@117743|Flavobacteriia 976|Bacteroidetes G Glycosyl hydrolases family 16 - - - - - - - - - - - - Glyco_hydro_16 DYD3_k127_6572640_0 1358423.N180_19030 5.598e-182 579.0 COG3250@1|root,COG3250@2|Bacteria,4NHRV@976|Bacteroidetes,1IUSH@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolases family 2, TIM barrel domain - - - - - - - - - - - - Glyco_hydro_2_C DYD3_k127_6572640_2 700598.Niako_0199 1.215e-109 370.0 COG1834@1|root,COG1834@2|Bacteria,4NE18@976|Bacteroidetes,1IPR8@117747|Sphingobacteriia 976|Bacteroidetes E PFAM SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_6572640_6 1267211.KI669560_gene2898 9.764e-05 46.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,1IP0D@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6576580_2 40215.BBOS01000039_gene12 1.096e-12 77.0 COG3595@1|root,COG3595@2|Bacteria,1N8NB@1224|Proteobacteria,1SFVZ@1236|Gammaproteobacteria,3NQZZ@468|Moraxellaceae 1236|Gammaproteobacteria S Putative auto-transporter adhesin, head GIN domain - - - - - - - - - - - - DUF2807 DYD3_k127_6576580_0 700598.Niako_6561 4.657e-175 555.0 COG0179@1|root,COG0179@2|Bacteria,4NGI0@976|Bacteroidetes,1IRA7@117747|Sphingobacteriia 976|Bacteroidetes Q PFAM fumarylacetoacetate (FAA) hydrolase - - 3.7.1.2 ko:K16171 ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120 M00044 R01364 RC00326,RC00446 ko00000,ko00001,ko00002,ko01000 - - - FAA_hydrolase DYD3_k127_6576580_1 700598.Niako_6562 2.56e-98 327.0 COG2367@1|root,COG2367@2|Bacteria,4NH6K@976|Bacteroidetes,1INP4@117747|Sphingobacteriia 976|Bacteroidetes V Beta-lactamase enzyme family - - - - - - - - - - - - Beta-lactamase2 DYD3_k127_6577224_3 153721.MYP_3974 1.961e-22 97.0 COG3546@1|root,COG3546@2|Bacteria,4NHIN@976|Bacteroidetes,47P5K@768503|Cytophagia 976|Bacteroidetes P Manganese containing catalase - - - - - - - - - - - - Mn_catalase DYD3_k127_6577224_2 1196323.ALKF01000152_gene1018 5.469e-42 162.0 2C4H4@1|root,32X9D@2|Bacteria,1VCB6@1239|Firmicutes,4HKJT@91061|Bacilli,26TSY@186822|Paenibacillaceae 91061|Bacilli - - - - - - - - - - - - - - - DYD3_k127_6577224_1 1459636.NTE_00977 6.522e-70 247.0 COG0010@1|root,arCOG01700@2157|Archaea 2157|Archaea E Belongs to the arginase family - - 3.5.3.1 ko:K01476 ko00220,ko00330,ko01100,ko01110,ko01130,ko01230,ko05146,map00220,map00330,map01100,map01110,map01130,map01230,map05146 M00029,M00134 R00551 RC00024,RC00329 ko00000,ko00001,ko00002,ko01000 - - - Arginase DYD3_k127_6577224_0 485918.Cpin_2411 2.18e-302 937.0 COG0210@1|root,COG1112@1|root,COG0210@2|Bacteria,COG1112@2|Bacteria,4NEK7@976|Bacteroidetes,1IQQR@117747|Sphingobacteriia 976|Bacteroidetes L DNA helicase - - - - - - - - - - - - AAA_11,AAA_12 DYD3_k127_6577480_1 1313421.JHBV01000028_gene1857 1.346e-29 135.0 COG1357@1|root,COG1404@1|root,COG3291@1|root,COG1357@2|Bacteria,COG1404@2|Bacteria,COG3291@2|Bacteria,4NJ47@976|Bacteroidetes 976|Bacteroidetes U PFAM PKD domain - - - - - - - - - - - - CHU_C,SBBP DYD3_k127_6577480_0 1408433.JHXV01000019_gene1917 9.039e-31 136.0 COG0535@1|root,COG0535@2|Bacteria,4NEGK@976|Bacteroidetes,1HYIP@117743|Flavobacteriia 976|Bacteroidetes S radical SAM domain protein - - - - - - - - - - - - - DYD3_k127_658059_6 700598.Niako_1486 3.812e-28 115.0 2DPXY@1|root,333V8@2|Bacteria,4NX4Y@976|Bacteroidetes,1IUB1@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_658059_7 1123248.KB893315_gene3018 4.043e-21 94.0 COG0500@1|root,COG0500@2|Bacteria,4NVGC@976|Bacteroidetes 976|Bacteroidetes Q methyltransferase - - - - - - - - - - - - - DYD3_k127_658059_4 760192.Halhy_2413 1.012e-88 308.0 COG0671@1|root,COG0671@2|Bacteria,4NF9W@976|Bacteroidetes,1IRBB@117747|Sphingobacteriia 976|Bacteroidetes I SPTR Phosphoesterase, PA-phosphatase related - - - - - - - - - - - - PAP2 DYD3_k127_658059_3 616991.JPOO01000001_gene3360 2.153e-94 317.0 COG2207@1|root,COG2207@2|Bacteria,4PI6R@976|Bacteroidetes,1IG3A@117743|Flavobacteriia,23IGX@178469|Arenibacter 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_658059_11 1233951.IO90_14220 2.502e-10 65.0 2936J@1|root,2ZQPM@2|Bacteria,4P7I2@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_658059_2 1122621.ATZA01000028_gene2567 7.63e-115 377.0 COG1858@1|root,COG1858@2|Bacteria,4NEKS@976|Bacteroidetes,1IQPC@117747|Sphingobacteriia 976|Bacteroidetes C cytochrome c peroxidase - - 1.11.1.5 ko:K00428 - - - - ko00000,ko01000 - - - CCP_MauG,Cytochrom_C DYD3_k127_658059_8 700598.Niako_0386 2.097e-18 88.0 COG1917@1|root,COG1917@2|Bacteria,4NMAI@976|Bacteroidetes 976|Bacteroidetes S PFAM Cupin 2, conserved barrel - - - - - - - - - - - - Cupin_2 DYD3_k127_658059_9 1185876.BN8_01699 3.62e-17 91.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - - - - - - - - - - GerE,PAS_3 DYD3_k127_658059_1 1185876.BN8_01621 2.395e-152 492.0 COG0671@1|root,COG0671@2|Bacteria,4NKIN@976|Bacteroidetes,47T9W@768503|Cytophagia 976|Bacteroidetes I PAP2 superfamily - - - - - - - - - - - - PAP2 DYD3_k127_658059_5 700598.Niako_5399 3.552e-29 119.0 COG1974@1|root,COG1974@2|Bacteria,4NQXK@976|Bacteroidetes,1ITYU@117747|Sphingobacteriia 976|Bacteroidetes KT PFAM Peptidase S24 S26A S26B, conserved region umuD - - ko:K03503 - - - - ko00000,ko01000,ko01002,ko03400 - - - Peptidase_S24 DYD3_k127_658059_0 700598.Niako_4608 0.0 1236.0 COG0587@1|root,COG0587@2|Bacteria,4NE2R@976|Bacteroidetes,1IQSQ@117747|Sphingobacteriia 976|Bacteroidetes L DNA polymerase - - 2.7.7.7 ko:K02337 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP DYD3_k127_6586037_2 700598.Niako_5617 4.297e-24 104.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,4NJY0@976|Bacteroidetes,1ISCB@117747|Sphingobacteriia 976|Bacteroidetes S Tetratricopeptide domain protein - - - - - - - - - - - - CHAT,TPR_10,TPR_12,TPR_8 DYD3_k127_6586037_0 700598.Niako_4810 2.776e-104 348.0 COG2207@1|root,COG2207@2|Bacteria,4NUK9@976|Bacteroidetes,1J0AA@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_6586037_1 1123248.KB893319_gene4013 5.346e-49 181.0 COG0346@1|root,COG0346@2|Bacteria,4NR65@976|Bacteroidetes,1IXKY@117747|Sphingobacteriia 976|Bacteroidetes E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase_4 DYD3_k127_6589659_2 700598.Niako_6936 2.471e-114 373.0 COG1968@1|root,COG1968@2|Bacteria,4NGIZ@976|Bacteroidetes,1IPDJ@117747|Sphingobacteriia 976|Bacteroidetes V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin uppP - 3.6.1.27 ko:K06153 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - BacA DYD3_k127_6589659_3 700598.Niako_6937 5.128e-32 126.0 2E6VD@1|root,331EZ@2|Bacteria,4NUSW@976|Bacteroidetes,1IUJM@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF3098) fjo13 - - - - - - - - - - - DUF3098 DYD3_k127_6589659_1 700598.Niako_6938 1.597e-128 416.0 COG2177@1|root,COG2177@2|Bacteria,4NH05@976|Bacteroidetes,1INNN@117747|Sphingobacteriia 976|Bacteroidetes D Belongs to the ABC-4 integral membrane protein family. FtsX subfamily ftsX GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - ko:K09811 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - FtsX DYD3_k127_6589659_0 700598.Niako_6939 2.415e-192 606.0 COG0495@1|root,COG0495@2|Bacteria,4NE5K@976|Bacteroidetes,1IP89@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class-I aminoacyl-tRNA synthetase family leuS GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 ko:K01869 ko00970,map00970 M00359,M00360 R03657 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Anticodon_1,DUF559,tRNA-synt_1,tRNA-synt_1_2 DYD3_k127_6593814_0 700598.Niako_4493 9.902e-189 595.0 COG0141@1|root,COG0141@2|Bacteria,4NFPZ@976|Bacteroidetes,1IQWR@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine hisD GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 ko:K00013 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01158,R01163,R03012 RC00099,RC00242,RC00463 ko00000,ko00001,ko00002,ko01000 - - - Histidinol_dh DYD3_k127_6593814_1 700598.Niako_4494 2.338e-184 580.0 COG0079@1|root,COG0079@2|Bacteria,4NEDI@976|Bacteroidetes,1IQ0J@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_6593814_2 700598.Niako_4495 1.698e-177 565.0 COG2133@1|root,COG2133@2|Bacteria,4NDV1@976|Bacteroidetes,1IQE3@117747|Sphingobacteriia 976|Bacteroidetes G sorbosone dehydrogenase - - - - - - - - - - - - GSDH DYD3_k127_6593814_4 509635.N824_20060 5.533e-42 158.0 COG2010@1|root,COG2010@2|Bacteria,4NEXP@976|Bacteroidetes,1IQ7I@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Cytochrome c, class I - - - ko:K00405 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrom_C,Cytochrome_CBB3 DYD3_k127_6593814_3 700598.Niako_4497 7.369e-82 273.0 COG0131@1|root,COG0241@1|root,COG0131@2|Bacteria,COG0241@2|Bacteria,4NENP@976|Bacteroidetes,1IP4B@117747|Sphingobacteriia 976|Bacteroidetes E belongs to the imidazoleglycerol-phosphate dehydratase family hisB GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15,4.2.1.19 ko:K01089,ko:K01693 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R03013,R03457 RC00017,RC00932 ko00000,ko00001,ko00002,ko01000 - - - Hydrolase_like,IGPD,PNK3P DYD3_k127_660750_2 1506583.JQJY01000008_gene4073 1.464e-39 157.0 COG1680@1|root,COG1680@2|Bacteria,4NI1Z@976|Bacteroidetes,1HYQF@117743|Flavobacteriia,2NT82@237|Flavobacterium 976|Bacteroidetes V beta-lactamase - - - - - - - - - - - - Beta-lactamase,DUF3471 DYD3_k127_660750_0 700598.Niako_6799 1.183e-49 182.0 28SVG@1|root,2ZF52@2|Bacteria,4P884@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_660750_1 1123248.KB893318_gene4196 4.194e-43 159.0 COG4914@1|root,COG4914@2|Bacteria,4NJHM@976|Bacteroidetes,1IP9X@117747|Sphingobacteriia 976|Bacteroidetes S Nucleotidyl transferase of unknown function (DUF2204) - - - - - - - - - - - - DUF2204,NTP_transf_5 DYD3_k127_6611325_2 700598.Niako_6071 5.31e-90 299.0 COG2265@1|root,COG2265@2|Bacteria,4NFP1@976|Bacteroidetes,1IQPD@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family rumA - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr DYD3_k127_6611325_5 326298.Suden_0400 1.369e-68 245.0 COG0697@1|root,COG0697@2|Bacteria,1MZXM@1224|Proteobacteria,42ME7@68525|delta/epsilon subdivisions,2YMBW@29547|Epsilonproteobacteria 29547|Epsilonproteobacteria EG membrane - - - ko:K15270 - - - - ko00000,ko02000 2.A.7.3.7 - - EamA DYD3_k127_6611325_3 700598.Niako_6072 1.938e-87 291.0 COG0229@1|root,COG0229@2|Bacteria,4NQEY@976|Bacteroidetes,1ISB0@117747|Sphingobacteriia 976|Bacteroidetes O methionine sulfoxide reductase msrB - 1.8.4.11,1.8.4.12 ko:K07305,ko:K12267 - - - - ko00000,ko01000 - - - PMSR,SelR DYD3_k127_6611325_4 700598.Niako_6073 1.521e-75 258.0 COG0563@1|root,COG0563@2|Bacteria,4NG7J@976|Bacteroidetes,1IRJW@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism adk - 2.7.4.3 ko:K00939 ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130 M00049 R00127,R01547,R11319 RC00002 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ADK,Pribosyltran DYD3_k127_6611325_1 700598.Niako_6074 5.186e-156 497.0 COG0265@1|root,COG0265@2|Bacteria,4NGRE@976|Bacteroidetes,1IVGD@117747|Sphingobacteriia 976|Bacteroidetes O COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - - - - - - - - - - PDZ_2,Trypsin_2 DYD3_k127_6611325_6 929556.Solca_0484 1.428e-48 187.0 COG3182@1|root,COG3182@2|Bacteria,4NIWJ@976|Bacteroidetes,1IS7U@117747|Sphingobacteriia 976|Bacteroidetes S PepSY-associated TM region - - - - - - - - - - - - PepSY_TM DYD3_k127_6611325_0 929556.Solca_0483 2.069e-286 899.0 COG4773@1|root,COG4773@2|Bacteria,4NI3Y@976|Bacteroidetes,1IR04@117747|Sphingobacteriia 976|Bacteroidetes M TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6611325_9 509635.N824_25950 2.41e-11 70.0 2EGFG@1|root,33A7G@2|Bacteria,4P9MA@976|Bacteroidetes,1ITZI@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6612165_0 700598.Niako_4535 2.506e-198 621.0 COG0156@1|root,COG0156@2|Bacteria,4NFRY@976|Bacteroidetes,1IQY7@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Aminotransferase class I and II - - 2.3.1.29 ko:K00639 ko00260,map00260 - R00371 RC00004,RC00394 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_6612165_1 700598.Niako_4534 1.395e-172 548.0 COG1524@1|root,COG1524@2|Bacteria,4NE94@976|Bacteroidetes,1IQXH@117747|Sphingobacteriia 976|Bacteroidetes S PFAM type I phosphodiesterase nucleotide pyrophosphatase pafA - - - - - - - - - - - Phosphodiest DYD3_k127_6617374_1 1122931.AUAE01000007_gene1156 3.371e-100 336.0 COG1435@1|root,COG1435@2|Bacteria,4NGX8@976|Bacteroidetes,2FPJC@200643|Bacteroidia 976|Bacteroidetes F SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_6617374_0 700598.Niako_5387 6.555e-246 775.0 COG1082@1|root,COG1082@2|Bacteria,4NEWC@976|Bacteroidetes,1IQQW@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase 97 - - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - GH97_C,GH97_N,Glyco_hydro_97 DYD3_k127_6627311_3 153721.MYP_3529 5.066e-37 148.0 2DBXV@1|root,2ZBR7@2|Bacteria,4NNEK@976|Bacteroidetes,47U2F@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6627311_5 471854.Dfer_0118 5.197e-08 55.0 29XQK@1|root,30JGA@2|Bacteria,4NNS6@976|Bacteroidetes,47SDP@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6627311_0 1166018.FAES_1909 2.608e-125 421.0 COG2304@1|root,COG2304@2|Bacteria,4NG2X@976|Bacteroidetes,47K72@768503|Cytophagia 976|Bacteroidetes S von Willebrand factor (vWF) type A domain - - - - - - - - - - - - CarbopepD_reg_2,VWA DYD3_k127_6627311_1 700598.Niako_0425 3.472e-92 307.0 COG4122@1|root,COG4122@2|Bacteria,4NMF5@976|Bacteroidetes,1IWQE@117747|Sphingobacteriia 976|Bacteroidetes S O-methyltransferase - - - - - - - - - - - - Methyltransf_3 DYD3_k127_6627311_4 714943.Mucpa_1079 1.721e-35 138.0 COG3070@1|root,COG3070@2|Bacteria,4NSGZ@976|Bacteroidetes,1IU8R@117747|Sphingobacteriia 976|Bacteroidetes K TfoX N-terminal domain - - - - - - - - - - - - TfoX_N DYD3_k127_6627311_2 1122605.KB893637_gene3053 5.573e-79 276.0 2DKW8@1|root,30JES@2|Bacteria,4NPM5@976|Bacteroidetes,1ITXX@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6629133_0 1123276.KB893260_gene2592 3.197e-127 417.0 COG2885@1|root,COG2885@2|Bacteria,4NI3U@976|Bacteroidetes,47MNU@768503|Cytophagia 976|Bacteroidetes M Belongs to the ompA family - - - ko:K03286 - - - - ko00000,ko02000 1.B.6 - - OMP_b-brl_2,OmpA DYD3_k127_6636972_2 760192.Halhy_3517 6.197e-89 299.0 COG0793@1|root,COG0793@2|Bacteria,4NGGJ@976|Bacteroidetes,1ITFP@117747|Sphingobacteriia 976|Bacteroidetes M Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 DYD3_k127_6636972_0 700598.Niako_4487 5.86e-153 494.0 COG0526@1|root,COG0526@2|Bacteria,4PMB3@976|Bacteroidetes,1J0IU@117747|Sphingobacteriia 976|Bacteroidetes CO Redoxin - - - - - - - - - - - - AhpC-TSA,Redoxin DYD3_k127_6636972_1 700598.Niako_4486 1.346e-131 421.0 COG0451@1|root,COG0451@2|Bacteria,4NE3U@976|Bacteroidetes,1IQ61@117747|Sphingobacteriia 976|Bacteroidetes M PFAM NAD dependent epimerase dehydratase family tdh - - - - - - - - - - - Epimerase DYD3_k127_6640252_0 700598.Niako_6446 2.348e-179 584.0 COG0642@1|root,COG0784@1|root,COG2203@1|root,COG3829@1|root,COG0784@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,COG3829@2|Bacteria,4NDXU@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - 7TMR-DISM_7TM,HATPase_c,HisKA,PAS_9,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_6651544_0 700598.Niako_4722 2.438e-184 589.0 COG5184@1|root,COG5184@2|Bacteria 2|Bacteria DZ guanyl-nucleotide exchange factor activity - - - - - - - - - - - - Beta_helix,CHU_C,Cu_amine_oxidN1,TIG DYD3_k127_6651544_1 1185876.BN8_06423 2.068e-126 409.0 COG0496@1|root,COG0496@2|Bacteria,4NGJN@976|Bacteroidetes,47M32@768503|Cytophagia 976|Bacteroidetes S Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates - - 3.1.3.5 ko:K03787 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - SurE DYD3_k127_6651544_2 929556.Solca_1691 2.165e-69 242.0 COG1597@1|root,COG1597@2|Bacteria,4NKR1@976|Bacteroidetes,1IS4U@117747|Sphingobacteriia 976|Bacteroidetes I PFAM Diacylglycerol kinase, catalytic - - - - - - - - - - - - DAGK_cat DYD3_k127_6652049_2 700598.Niako_6382 7.842e-17 80.0 COG0071@1|root,COG0071@2|Bacteria,4NVZT@976|Bacteroidetes 976|Bacteroidetes O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD3_k127_6652049_0 700598.Niako_6381 4.812e-154 495.0 COG2304@1|root,COG2304@2|Bacteria,4NEGD@976|Bacteroidetes,1IVER@117747|Sphingobacteriia 976|Bacteroidetes S von Willebrand factor (vWF) type A domain - - - - - - - - - - - - VWA DYD3_k127_6652049_1 1123248.KB893319_gene4050 3.422e-49 183.0 COG0671@1|root,COG0671@2|Bacteria,4NI23@976|Bacteroidetes,1IU3B@117747|Sphingobacteriia 976|Bacteroidetes I Acid phosphatase homologues - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 DYD3_k127_6656623_1 714943.Mucpa_7058 5.449e-48 175.0 COG1554@1|root,COG1554@2|Bacteria,4NHVP@976|Bacteroidetes,1IPI9@117747|Sphingobacteriia 976|Bacteroidetes G hydrolase, family 65, central catalytic - - - - - - - - - - - - - DYD3_k127_6656623_0 468059.AUHA01000003_gene1713 2.996e-285 889.0 COG0465@1|root,COG0465@2|Bacteria,4NF0E@976|Bacteroidetes,1IWIH@117747|Sphingobacteriia 976|Bacteroidetes O FtsH Extracellular - - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 DYD3_k127_6661151_1 700598.Niako_6787 1.842e-94 310.0 COG1595@1|root,COG1595@2|Bacteria,4NMM3@976|Bacteroidetes,1IPYA@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily sigR_3 - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_6661151_0 1123248.KB893348_gene318 7.582e-197 622.0 COG1233@1|root,COG1233@2|Bacteria,4NF7K@976|Bacteroidetes,1IQI6@117747|Sphingobacteriia 976|Bacteroidetes Q COG1233 Phytoene dehydrogenase and related crtI - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 ko:K10027 ko00906,ko01100,ko01110,map00906,map01100,map01110 - R04787,R04798,R04800,R09691,R09692 RC01214,RC02088,RC02605 ko00000,ko00001,ko01000 - - - Amino_oxidase DYD3_k127_666802_1 700598.Niako_3715 1.76e-39 151.0 COG0642@1|root,COG0745@1|root,COG0784@1|root,COG2203@1|root,COG5002@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,COG5002@2|Bacteria,4NDXU@976|Bacteroidetes,1IR0D@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - GAF,HATPase_c,HisKA,Hpt,PAS_3,PAS_4,PAS_9,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_666802_0 1237149.C900_00470 1.145e-179 587.0 COG1629@1|root,COG4771@2|Bacteria,4NJAM@976|Bacteroidetes,47NVN@768503|Cytophagia 976|Bacteroidetes P TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarboxypepD_reg,Plug,TonB_dep_Rec DYD3_k127_666802_2 700598.Niako_3714 6.276e-20 92.0 COG1629@1|root,COG4771@2|Bacteria,4NJX5@976|Bacteroidetes 976|Bacteroidetes P TonB-dependent Receptor Plug Domain - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec DYD3_k127_6668299_1 700598.Niako_4437 5.886e-202 632.0 COG0249@1|root,COG0249@2|Bacteria,4NEGB@976|Bacteroidetes,1IR7Y@117747|Sphingobacteriia 976|Bacteroidetes L that it carries out the mismatch recognition step. This protein has a weak ATPase activity mutS GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03555 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V DYD3_k127_6668299_2 700598.Niako_4439 3.873e-163 522.0 COG3503@1|root,COG3503@2|Bacteria,4NFAF@976|Bacteroidetes,1IYZU@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1624) - - - - - - - - - - - - DUF1624 DYD3_k127_6668299_0 760192.Halhy_2533 1.558e-298 924.0 COG2303@1|root,COG2303@2|Bacteria,4NHJT@976|Bacteroidetes,1IRDW@117747|Sphingobacteriia 976|Bacteroidetes E FAD dependent oxidoreductase - - - - - - - - - - - - GMC_oxred_C,GMC_oxred_N DYD3_k127_6668299_3 435591.BDI_1685 1.95e-153 493.0 COG0457@1|root,COG0457@2|Bacteria,4P4TG@976|Bacteroidetes,2FX8R@200643|Bacteroidia 976|Bacteroidetes S Domain of unknown function (DUF5107) - - - - - - - - - - - - DUF5107 DYD3_k127_6672735_2 316067.Geob_1474 1.504e-86 292.0 COG0500@1|root,COG2226@2|Bacteria,1RF23@1224|Proteobacteria,42YRT@68525|delta/epsilon subdivisions,2WTIX@28221|Deltaproteobacteria 28221|Deltaproteobacteria Q Caenorhabditis protein of unknown function, DUF268 - - - - - - - - - - - - DUF268 DYD3_k127_6672735_4 404380.Gbem_3441 6.724e-55 207.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2 DYD3_k127_6672735_3 749222.Nitsa_1996 5.313e-63 225.0 COG0438@1|root,COG1215@1|root,COG0438@2|Bacteria,COG1215@2|Bacteria,1RIJ7@1224|Proteobacteria,42WPQ@68525|delta/epsilon subdivisions 1224|Proteobacteria M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_1,Glycos_transf_2,RgpF DYD3_k127_6672735_0 1267211.KI669560_gene1650 2.791e-218 704.0 COG4485@1|root,COG4485@2|Bacteria,4NEE5@976|Bacteroidetes,1IP87@117747|Sphingobacteriia 976|Bacteroidetes S Bacterial membrane protein YfhO - - - - - - - - - - - - YfhO DYD3_k127_6672735_1 925409.KI911562_gene2009 2.897e-126 411.0 COG1216@1|root,COG1216@2|Bacteria,4NKAZ@976|Bacteroidetes,1IUIJ@117747|Sphingobacteriia 976|Bacteroidetes S Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 DYD3_k127_6707973_3 330214.NIDE2695 4.79e-08 64.0 COG2755@1|root,COG2755@2|Bacteria 2|Bacteria E lipolytic protein G-D-S-L family - - - ko:K20306 - - - - ko00000,ko04131 - - - Lipase_GDSL,Lipase_GDSL_2 DYD3_k127_6707973_0 700598.Niako_4945 9.032e-113 371.0 COG4974@1|root,COG4974@2|Bacteria,4NGQW@976|Bacteroidetes,1IP2Y@117747|Sphingobacteriia 976|Bacteroidetes L Belongs to the 'phage' integrase family. XerC subfamily xerC - - ko:K03733 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase DYD3_k127_6707973_2 700598.Niako_4946 5.665e-28 113.0 COG0828@1|root,COG0828@2|Bacteria,4NUPV@976|Bacteroidetes,1IU0K@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the bacterial ribosomal protein bS21 family rpsU - - ko:K02970 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S21 DYD3_k127_6707973_1 700598.Niako_4947 4.369e-79 269.0 COG0307@1|root,COG0307@2|Bacteria,4NHI8@976|Bacteroidetes,1IPZJ@117747|Sphingobacteriia 976|Bacteroidetes H riboflavin synthase, alpha subunit ribE - 2.5.1.9 ko:K00793 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00066 RC00958,RC00960 ko00000,ko00001,ko00002,ko01000 - - - Lum_binding DYD3_k127_6723938_1 1123277.KB893180_gene2460 5.946e-14 79.0 2E25C@1|root,32XC8@2|Bacteria,4NTJ4@976|Bacteroidetes,47RB3@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6723938_0 700598.Niako_6612 7.055e-212 666.0 COG1012@1|root,COG1012@2|Bacteria,4NGHD@976|Bacteroidetes,1IPD9@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the aldehyde dehydrogenase family aldH - 1.2.1.3 ko:K00128 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD3_k127_6724389_0 700598.Niako_6909 0.0 1129.0 COG1629@1|root,COG4771@2|Bacteria,4PKRZ@976|Bacteroidetes,1J0Q2@117747|Sphingobacteriia 976|Bacteroidetes P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_6730931_0 1077285.AGDG01000027_gene1589 0.0 1172.0 COG1629@1|root,COG4771@2|Bacteria,4NDU8@976|Bacteroidetes,2FMRZ@200643|Bacteroidia,4AKS4@815|Bacteroidaceae 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_6730931_1 485918.Cpin_2948 2.327e-07 52.0 COG3712@1|root,COG3712@2|Bacteria,4NE6N@976|Bacteroidetes 976|Bacteroidetes PT COG3712 Fe2 -dicitrate sensor, membrane component - - - - - - - - - - - - DUF4974,FecR DYD3_k127_6736598_2 1123248.KB893332_gene2266 1.199e-163 541.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes 976|Bacteroidetes H TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_6736598_3 700598.Niako_5503 1.24e-67 237.0 COG0576@1|root,COG0576@2|Bacteria,4NQ6M@976|Bacteroidetes,1ISPN@117747|Sphingobacteriia 976|Bacteroidetes O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ grpE GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - ko:K03687 - - - - ko00000,ko03029,ko03110 - - - GrpE DYD3_k127_6736598_1 700598.Niako_5504 4.888e-217 677.0 COG0484@1|root,COG0484@2|Bacteria,4NF41@976|Bacteroidetes,1IQ7V@117747|Sphingobacteriia 976|Bacteroidetes O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins dnaJ - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG DYD3_k127_6736598_0 700598.Niako_5505 2.653e-251 783.0 COG2304@1|root,COG2304@2|Bacteria,4NFX3@976|Bacteroidetes,1IP2T@117747|Sphingobacteriia 976|Bacteroidetes P von Willebrand factor, type A - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - CarbopepD_reg_2,DUF3520,VWA,vWF_A DYD3_k127_6753334_9 111105.HR09_00540 7.5e-09 64.0 2CFTQ@1|root,339DN@2|Bacteria,4NVCV@976|Bacteroidetes,2FY76@200643|Bacteroidia,230K7@171551|Porphyromonadaceae 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6753334_5 1453505.JASY01000004_gene1824 5.903e-134 436.0 28PFH@1|root,2ZC6N@2|Bacteria,4NGVG@976|Bacteroidetes,1I10T@117743|Flavobacteriia,2NXFK@237|Flavobacterium 976|Bacteroidetes S Domain of unknown function (DUF4272) - - - - - - - - - - - - DUF4272 DYD3_k127_6753334_2 1454007.JAUG01000039_gene4274 1.82e-217 687.0 COG1012@1|root,COG1012@2|Bacteria,4NEKG@976|Bacteroidetes,1IQKE@117747|Sphingobacteriia 976|Bacteroidetes C Aldehyde dehydrogenase family - - 1.2.1.26 ko:K13877 ko00040,ko00053,map00040,map00053 - R00264 RC00080 ko00000,ko00001,ko01000 - - - Aldedh DYD3_k127_6753334_8 485917.Phep_3116 1.104e-17 93.0 COG2271@1|root,COG2271@2|Bacteria,4NE7R@976|Bacteroidetes,1IUWD@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Major Facilitator Superfamily - - - ko:K08191 - - - - ko00000,ko02000 2.A.1.14.2 - - MFS_1 DYD3_k127_6753334_7 1122605.KB893626_gene2619 8.931e-85 285.0 COG2271@1|root,COG2271@2|Bacteria,4NE7R@976|Bacteroidetes,1IUWD@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Major Facilitator Superfamily - - - ko:K08191 - - - - ko00000,ko02000 2.A.1.14.2 - - MFS_1 DYD3_k127_6753334_3 388413.ALPR1_12005 5.805e-136 440.0 COG3802@1|root,COG3802@2|Bacteria,4NGIM@976|Bacteroidetes,47TKS@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6753334_6 1123248.KB893326_gene1255 6.161e-122 395.0 COG1028@1|root,COG1028@2|Bacteria,4NFDX@976|Bacteroidetes,1IVCG@117747|Sphingobacteriia 976|Bacteroidetes IQ KR domain - - 1.1.1.69 ko:K00046 - - - - ko00000,ko01000 - - - adh_short_C2 DYD3_k127_6753334_0 1396141.BATP01000047_gene3928 1.262e-315 983.0 COG1501@1|root,COG1501@2|Bacteria,46TKY@74201|Verrucomicrobia,2IU43@203494|Verrucomicrobiae 74201|Verrucomicrobia G Glycosyl hydrolases family 31 - - 3.2.1.177 ko:K01811 - - - - ko00000,ko01000 - GH31 - DUF5110,Glyco_hydro_31 DYD3_k127_6753334_4 1144305.PMI02_00483 1.806e-134 439.0 COG4948@1|root,COG4948@2|Bacteria,1MW5B@1224|Proteobacteria,2UNXP@28211|Alphaproteobacteria,2KCTZ@204457|Sphingomonadales 204457|Sphingomonadales M Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - - - - - - - - - - MR_MLE_C,MR_MLE_N DYD3_k127_6753334_1 929713.NIASO_02865 1.503e-257 801.0 COG3664@1|root,COG3664@2|Bacteria,4NHQ0@976|Bacteroidetes,1INQN@117747|Sphingobacteriia 976|Bacteroidetes G PFAM glycoside hydrolase family 39 - - 3.2.1.37 ko:K01198 ko00520,ko01100,map00520,map01100 - R01433 RC00467 ko00000,ko00001,ko01000 - GH43 - Glyco_hydro_39 DYD3_k127_6767418_6 864702.OsccyDRAFT_4503 8.147e-08 61.0 COG2197@1|root,COG2197@2|Bacteria,1G85K@1117|Cyanobacteria,1HC90@1150|Oscillatoriales 1117|Cyanobacteria K Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE DYD3_k127_6767418_4 886293.Sinac_0066 7.973e-36 146.0 COG3921@1|root,COG3921@2|Bacteria,2J1YT@203682|Planctomycetes 203682|Planctomycetes S D-alanyl-D-alanine carboxypeptidase - - - - - - - - - - - - Peptidase_M15_4 DYD3_k127_6767418_2 1122605.KB893645_gene1198 2.682e-205 646.0 COG0833@1|root,COG0833@2|Bacteria,4PN7J@976|Bacteroidetes,1IQ7E@117747|Sphingobacteriia 976|Bacteroidetes E Amino acid permease - - - ko:K16238 - - - - ko00000,ko02000 2.A.3.5 - - AA_permease_2 DYD3_k127_6767418_0 1123248.KB893386_gene1972 6.549e-242 752.0 COG0174@1|root,COG0174@2|Bacteria,4NHET@976|Bacteroidetes,1IPJ3@117747|Sphingobacteriia 976|Bacteroidetes E Glutamine synthetase, catalytic domain glnA - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C,Gln-synt_N DYD3_k127_6767418_1 509635.N824_06000 1.452e-207 649.0 COG1454@1|root,COG1454@2|Bacteria,4NIU1@976|Bacteroidetes,1ISP5@117747|Sphingobacteriia 976|Bacteroidetes C Iron-containing alcohol dehydrogenase fucO - 1.1.1.77 ko:K00048 ko00630,ko00640,ko01120,map00630,map00640,map01120 - R01781,R02257 RC00087,RC00099 ko00000,ko00001,ko01000 - - - Fe-ADH DYD3_k127_6767418_3 509635.N824_05995 4.091e-73 254.0 COG2071@1|root,COG2071@2|Bacteria,4NNEJ@976|Bacteroidetes,1IS4X@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase C26 - - - ko:K07010 - - - - ko00000,ko01002 - - - Peptidase_C26 DYD3_k127_6767418_5 1454007.JAUG01000072_gene4109 1.344e-10 63.0 COG1012@1|root,COG1012@2|Bacteria,4NEB7@976|Bacteroidetes,1IPQB@117747|Sphingobacteriia 976|Bacteroidetes C Belongs to the aldehyde dehydrogenase family - - 1.2.1.3 ko:K00128 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh DYD3_k127_6770594_0 700598.Niako_1163 3.476e-135 438.0 28KQN@1|root,2ZA8E@2|Bacteria,4NID0@976|Bacteroidetes,1ITYR@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6770594_1 700598.Niako_1162 1.516e-66 231.0 COG2885@1|root,COG2885@2|Bacteria,4P5V0@976|Bacteroidetes 976|Bacteroidetes M chlorophyll binding - - - - - - - - - - - - - DYD3_k127_6777472_0 700598.Niako_4175 7.566e-107 351.0 COG0596@1|root,COG0596@2|Bacteria,4NFQZ@976|Bacteroidetes,1IU7T@117747|Sphingobacteriia 976|Bacteroidetes S Epoxide hydrolase domain protein - - - - - - - - - - - - Abhydrolase_1,EHN DYD3_k127_6777472_1 1121287.AUMU01000025_gene2733 3.934e-06 58.0 COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1HWYS@117743|Flavobacteriia,3ZR6E@59732|Chryseobacterium 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_2,TPR_10,TPR_12,TPR_8 DYD3_k127_6785659_0 760192.Halhy_1526 8.213e-108 361.0 COG1629@1|root,COG1629@2|Bacteria,4P4MW@976|Bacteroidetes,1IP05@117747|Sphingobacteriia 976|Bacteroidetes P COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD3_k127_6785659_1 649349.Lbys_0687 4.983e-34 136.0 COG3188@1|root,COG3188@2|Bacteria,4NHCJ@976|Bacteroidetes,47K9Y@768503|Cytophagia 976|Bacteroidetes NU usher protein - - - - - - - - - - - - - DYD3_k127_6801290_3 1121897.AUGO01000006_gene843 1.322e-09 63.0 COG3391@1|root,COG3391@2|Bacteria,4NSAP@976|Bacteroidetes,1I8CM@117743|Flavobacteriia,2NVND@237|Flavobacterium 976|Bacteroidetes S amine dehydrogenase activity - - - - - - - - - - - - - DYD3_k127_6801290_0 1267211.KI669560_gene730 2.061e-197 618.0 COG0332@1|root,COG0332@2|Bacteria,4NFIN@976|Bacteroidetes,1IRA1@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids fabH - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C DYD3_k127_6801290_2 485918.Cpin_6013 1.144e-48 180.0 2CSP1@1|root,32SRI@2|Bacteria,4NT1E@976|Bacteroidetes,1ITR8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6801290_1 700598.Niako_6535 3.517e-137 442.0 COG1647@1|root,COG1647@2|Bacteria,4NHPY@976|Bacteroidetes,1IQS4@117747|Sphingobacteriia 976|Bacteroidetes S Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6,BAAT_C,Hydrolase_4 DYD3_k127_6829498_3 700598.Niako_5505 3.947e-13 70.0 COG2304@1|root,COG2304@2|Bacteria,4NFX3@976|Bacteroidetes,1IP2T@117747|Sphingobacteriia 976|Bacteroidetes P von Willebrand factor, type A - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - CarbopepD_reg_2,DUF3520,VWA,vWF_A DYD3_k127_6829498_1 700598.Niako_5506 1.319e-96 317.0 COG0634@1|root,COG0634@2|Bacteria,4NNIB@976|Bacteroidetes,1ISTD@117747|Sphingobacteriia 976|Bacteroidetes F Belongs to the purine pyrimidine phosphoribosyltransferase family hpt - 2.4.2.8 ko:K00760 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 - R00190,R01132,R01229,R02142,R08237,R08238,R08245 RC00063,RC00122 ko00000,ko00001,ko01000 - - - Pribosyltran DYD3_k127_6829498_0 700598.Niako_5507 7.828e-133 434.0 COG1388@1|root,COG1705@1|root,COG1388@2|Bacteria,COG1705@2|Bacteria,4NEER@976|Bacteroidetes,1IP5H@117747|Sphingobacteriia 976|Bacteroidetes NU COG1705 Muramidase (flagellum-specific) lytG - - - - - - - - - - - Glucosaminidase,LysM DYD3_k127_6829498_2 700598.Niako_5508 1.039e-87 294.0 COG4122@1|root,COG4122@2|Bacteria,4NH42@976|Bacteroidetes,1IRTF@117747|Sphingobacteriia 976|Bacteroidetes S O-methyltransferase mdmC - 2.1.1.104 ko:K00588 ko00360,ko00940,ko00941,ko00945,ko01100,ko01110,map00360,map00940,map00941,map00945,map01100,map01110 M00039,M00350 R01942,R06578 RC00003,RC00392 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_3 DYD3_k127_683755_0 743722.Sph21_3788 1.73e-113 376.0 COG0189@1|root,COG0189@2|Bacteria,4NQ8F@976|Bacteroidetes,1IT4K@117747|Sphingobacteriia 976|Bacteroidetes HJ ligase activity - - - - - - - - - - - - - DYD3_k127_683755_1 555779.Dthio_PD3374 2.783e-09 60.0 COG0730@1|root,COG0730@2|Bacteria,1RBHH@1224|Proteobacteria,42R9E@68525|delta/epsilon subdivisions,2WNRJ@28221|Deltaproteobacteria,2MAXH@213115|Desulfovibrionales 28221|Deltaproteobacteria S membrane transporter protein - - - ko:K07090 - - - - ko00000 - - - TauE DYD3_k127_6838186_1 1117314.PCIT_12464 1.124e-31 144.0 COG0412@1|root,COG0412@2|Bacteria,1RD65@1224|Proteobacteria,1S4E2@1236|Gammaproteobacteria,2Q2KP@267888|Pseudoalteromonadaceae 1236|Gammaproteobacteria Q Dienelactone hydrolase - - - - - - - - - - - - - DYD3_k127_6838186_0 1123277.KB893190_gene4939 6.355e-256 815.0 COG0644@1|root,COG0644@2|Bacteria,4P07W@976|Bacteroidetes,47N5I@768503|Cytophagia 976|Bacteroidetes C FAD dependent oxidoreductase - - - - - - - - - - - - FAD_oxidored DYD3_k127_6842364_1 1158294.JOMI01000005_gene3247 3.894e-116 384.0 2CQ3S@1|root,32SKE@2|Bacteria,4NS8J@976|Bacteroidetes,2G03U@200643|Bacteroidia 976|Bacteroidetes - - - - - - - - - - - - - - DUF5007 DYD3_k127_6842364_0 1158294.JOMI01000005_gene3249 7.492e-208 659.0 COG0702@1|root,COG0702@2|Bacteria 2|Bacteria GM epimerase - - 1.14.14.47 ko:K00491,ko:K21572 ko00220,ko00330,ko01100,ko01110,map00220,map00330,map01100,map01110 - R11711,R11712,R11713 RC00177,RC00330,RC01044 ko00000,ko00001,ko01000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_6842364_2 1158294.JOMI01000005_gene3250 4.036e-95 315.0 COG4206@1|root,COG4206@2|Bacteria,4P258@976|Bacteroidetes,2FW53@200643|Bacteroidia 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_68424_4 398720.MED217_17470 1.677e-47 176.0 COG0520@1|root,COG0520@2|Bacteria,4NM0W@976|Bacteroidetes,1I00M@117743|Flavobacteriia,2XJWU@283735|Leeuwenhoekiella 976|Bacteroidetes E Aminotransferase class-V - - - - - - - - - - - - Aminotran_5 DYD3_k127_68424_2 204669.Acid345_4418 3.071e-78 269.0 2CHAC@1|root,2Z7QK@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_68424_0 700598.Niako_6053 1.789e-164 524.0 COG1018@1|root,COG1018@2|Bacteria,4NF24@976|Bacteroidetes,1IWHK@117747|Sphingobacteriia 976|Bacteroidetes C Oxidoreductase FAD-binding domain paaE - - ko:K02613 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001 - - - FAD_binding_6,Fer2,NAD_binding_1 DYD3_k127_68424_1 700598.Niako_6052 6.045e-103 337.0 COG1309@1|root,COG1309@2|Bacteria,4NMN2@976|Bacteroidetes,1IYNI@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator, TetR family - - - - - - - - - - - - TetR_C_4,TetR_C_5,TetR_N DYD3_k127_68424_3 700598.Niako_6051 8.179e-71 241.0 COG0524@1|root,COG0524@2|Bacteria,4NFJ9@976|Bacteroidetes,1INMS@117747|Sphingobacteriia 976|Bacteroidetes G PFAM pfkB family carbohydrate kinase ydjH - - - - - - - - - - - PfkB DYD3_k127_6856015_0 929703.KE386491_gene1898 2.775e-211 667.0 COG3391@1|root,COG3391@2|Bacteria,4NGDH@976|Bacteroidetes,47KH5@768503|Cytophagia 976|Bacteroidetes M alkaline phosphatase - - - - - - - - - - - - Big_5,Calx-beta,LVIVD DYD3_k127_6856015_2 558152.IQ37_16200 7.733e-17 93.0 COG2244@1|root,COG2244@2|Bacteria,4NRKF@976|Bacteroidetes,1I3V4@117743|Flavobacteriia,3ZR5J@59732|Chryseobacterium 976|Bacteroidetes S Polysaccharide biosynthesis C-terminal domain - - - - - - - - - - - - Polysacc_synt,Polysacc_synt_C DYD3_k127_6856015_1 1356852.N008_10580 1.14e-45 180.0 COG0438@1|root,COG0438@2|Bacteria,4NFPA@976|Bacteroidetes,47S2Z@768503|Cytophagia 976|Bacteroidetes M Glycosyltransferase Family 4 - - - - - - - - - - - - Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 DYD3_k127_6856015_3 234267.Acid_0487 1.777e-09 67.0 COG1807@1|root,COG1807@2|Bacteria 2|Bacteria M 4-amino-4-deoxy-L-arabinose transferase activity - - - ko:K14340 - - - - ko00000,ko01000,ko01003 - - - PMT_2 DYD3_k127_6858350_5 929713.NIASO_18850 7.458e-10 59.0 COG0359@1|root,COG0359@2|Bacteria,4NNRP@976|Bacteroidetes,1IRUM@117747|Sphingobacteriia 976|Bacteroidetes J binds to the 23S rRNA rplI GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02939 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L9_C,Ribosomal_L9_N DYD3_k127_6858350_2 700598.Niako_5128 6.8e-63 217.0 COG0724@1|root,COG0724@2|Bacteria,4NT1J@976|Bacteroidetes,1ITMI@117747|Sphingobacteriia 976|Bacteroidetes S PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - - - - - - - - - - RRM_1 DYD3_k127_6858350_0 700598.Niako_5129 3.255e-244 759.0 COG0560@1|root,COG1215@1|root,COG0560@2|Bacteria,COG1215@2|Bacteria,4NHAG@976|Bacteroidetes,1IVDW@117747|Sphingobacteriia 976|Bacteroidetes EM Putative Phosphatase serB - 3.1.3.3 ko:K01079 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R00582 RC00017 ko00000,ko00001,ko00002,ko01000,ko01009 - - - ACT_6,HAD DYD3_k127_6858350_1 700598.Niako_5130 4.588e-148 472.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - - - - - - - - - - Usp DYD3_k127_6858350_4 660470.Theba_2105 1.98e-32 137.0 COG1597@1|root,COG1597@2|Bacteria,2GCWI@200918|Thermotogae 200918|Thermotogae I diacylglycerol kinase, catalytic - - - - - - - - - - - - DAGK_cat DYD3_k127_6858350_3 760192.Halhy_6802 9.694e-38 143.0 COG0673@1|root,COG0673@2|Bacteria,4NF96@976|Bacteroidetes,1IQ5B@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_6862682_0 1279009.ADICEAN_02120 2.585e-242 762.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47MUE@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_6862682_1 700598.Niako_1205 9.7e-109 352.0 COG1136@1|root,COG1136@2|Bacteria,4NFDW@976|Bacteroidetes,1INQS@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_6871178_2 1267211.KI669560_gene1901 5.893e-76 259.0 2AUDP@1|root,31K1P@2|Bacteria,4NRCQ@976|Bacteroidetes,1IYFT@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2452) - - - - - - - - - - - - DUF2452 DYD3_k127_6871178_0 700598.Niako_1564 1.185e-182 582.0 28HE2@1|root,2Z7QJ@2|Bacteria,4NFBA@976|Bacteroidetes,1INW8@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF5103) - - - - - - - - - - - - DUF5103 DYD3_k127_6871178_1 700598.Niako_1563 1.738e-84 285.0 COG4591@1|root,COG4591@2|Bacteria,4NFWZ@976|Bacteroidetes,1IPU4@117747|Sphingobacteriia 976|Bacteroidetes M ABC-type transport system involved in lipoprotein release permease component lolE_1 - - ko:K09808 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko02000 3.A.1.125 - - FtsX,MacB_PCD DYD3_k127_6874383_7 700598.Niako_4384 7.472e-126 405.0 COG1680@1|root,COG1680@2|Bacteria,4NEVS@976|Bacteroidetes,1IRZ6@117747|Sphingobacteriia 976|Bacteroidetes V COG1680 Beta-lactamase class C and other penicillin binding nylB - - - - - - - - - - - Beta-lactamase DYD3_k127_6874383_6 700598.Niako_4383 7.596e-134 429.0 COG2120@1|root,COG2120@2|Bacteria,4NEDJ@976|Bacteroidetes,1INQT@117747|Sphingobacteriia 976|Bacteroidetes S GlcNAc-PI de-N-acetylase bshB1 - - ko:K01463 - - - - ko00000,ko01000 - - - PIG-L DYD3_k127_6874383_5 1356852.N008_13645 3.533e-159 508.0 COG3239@1|root,COG3239@2|Bacteria,4NERD@976|Bacteroidetes,47NRC@768503|Cytophagia 976|Bacteroidetes I fatty acid desaturase - - 1.14.19.3 ko:K00508 ko00591,ko01100,map00591,map01100 - R07063 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase DYD3_k127_6874383_3 700598.Niako_4382 3.163e-175 552.0 COG0388@1|root,COG0388@2|Bacteria,4NEME@976|Bacteroidetes,1IPIY@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase pabB - 3.5.1.53,3.5.1.6 ko:K01431,ko:K12251 ko00240,ko00330,ko00410,ko00770,ko00983,ko01100,map00240,map00330,map00410,map00770,map00983,map01100 M00046 R00905,R01152,R04666,R08228 RC00096 ko00000,ko00001,ko00002,ko01000 - - - CN_hydrolase DYD3_k127_6874383_1 700598.Niako_4381 9.445e-189 594.0 COG2957@1|root,COG2957@2|Bacteria,4NGF8@976|Bacteroidetes,1IP6F@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the agmatine deiminase family aguA - 3.5.3.12 ko:K10536 ko00330,ko01100,map00330,map01100 - R01416 RC00177 ko00000,ko00001,ko01000 - - - PAD_porph DYD3_k127_6874383_9 714943.Mucpa_1805 4.855e-112 368.0 COG0702@1|root,COG0702@2|Bacteria,4NGMK@976|Bacteroidetes,1IRD8@117747|Sphingobacteriia 976|Bacteroidetes GM PFAM NmrA-like family - - - - - - - - - - - - NAD_binding_10,NmrA DYD3_k127_6874383_10 929556.Solca_2640 9.555e-60 209.0 COG1733@1|root,COG1733@2|Bacteria,4NNVT@976|Bacteroidetes,1IT49@117747|Sphingobacteriia 976|Bacteroidetes K PFAM HxlR-like helix-turn-helix - - - - - - - - - - - - HxlR DYD3_k127_6874383_0 700598.Niako_4376 4.375e-203 638.0 COG0498@1|root,COG0498@2|Bacteria,4NKWI@976|Bacteroidetes,1ITTX@117747|Sphingobacteriia 976|Bacteroidetes E Pyridoxal-phosphate dependent enzyme - - 4.2.3.1 ko:K01733 ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230 M00018 R01466,R05086 RC00017,RC00526 ko00000,ko00001,ko00002,ko01000 - - - PALP DYD3_k127_6874383_4 700598.Niako_4375 2.464e-160 508.0 COG0583@1|root,COG0583@2|Bacteria,4NHTU@976|Bacteroidetes,1IWM3@117747|Sphingobacteriia 976|Bacteroidetes K PFAM Bacterial regulatory helix-turn-helix protein, lysR family - - - - - - - - - - - - HTH_1,LysR_substrate DYD3_k127_6874383_8 700598.Niako_4374 9.179e-121 392.0 COG0589@1|root,COG0589@2|Bacteria,4NPYE@976|Bacteroidetes,1ISGK@117747|Sphingobacteriia 976|Bacteroidetes T Universal stress protein - - - - - - - - - - - - Usp DYD3_k127_6874383_2 700598.Niako_4373 6.33e-186 589.0 COG3525@1|root,COG3525@2|Bacteria,4NE08@976|Bacteroidetes,1IPJF@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolase family 20, catalytic domain - - 3.2.1.52 ko:K12373 ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142 M00079 R00022,R06004,R11316 RC00049 ko00000,ko00001,ko00002,ko01000,ko03110 - GH20 - Fn3_assoc,Glyco_hydro_20,Glyco_hydro_20b DYD3_k127_68810_4 1434325.AZQN01000006_gene3321 1.108e-115 377.0 COG0457@1|root,COG0457@2|Bacteria,4NDX0@976|Bacteroidetes,47M5F@768503|Cytophagia 976|Bacteroidetes S SusD family - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_68810_3 700598.Niako_3912 1.278e-128 416.0 COG1349@1|root,COG1349@2|Bacteria,4NE7U@976|Bacteroidetes,1IPYC@117747|Sphingobacteriia 976|Bacteroidetes K Bacterial regulatory proteins, deoR family - - - - - - - - - - - - DeoRC,HTH_DeoR DYD3_k127_68810_0 1267211.KI669560_gene1916 0.0 1389.0 COG1629@1|root,COG4771@2|Bacteria,4NDU8@976|Bacteroidetes,1IPAN@117747|Sphingobacteriia 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_68810_1 1267211.KI669560_gene1915 1.289e-241 757.0 COG0521@1|root,COG0521@2|Bacteria,4NHNF@976|Bacteroidetes,1IP72@117747|Sphingobacteriia 976|Bacteroidetes H Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like,SusD-like_2 DYD3_k127_68810_2 1358423.N180_02545 3.425e-144 469.0 COG0700@1|root,COG2715@1|root,COG0700@2|Bacteria,COG2715@2|Bacteria,4NFUN@976|Bacteroidetes,1IP2N@117747|Sphingobacteriia 976|Bacteroidetes S membrane protein required for spore maturation in B.subtilis spmA - - ko:K06373 - - - - ko00000 - - - Gate DYD3_k127_6884689_1 1249997.JHZW01000003_gene3184 1.619e-80 275.0 COG2207@1|root,COG2207@2|Bacteria,4NGE5@976|Bacteroidetes,1HZKW@117743|Flavobacteriia,2PHZ0@252356|Maribacter 976|Bacteroidetes K AraC-like ligand binding domain - - - - - - - - - - - - AraC_binding,Cupin_2,HTH_18 DYD3_k127_6884689_0 1250232.JQNJ01000001_gene3867 0.0 1269.0 COG1413@1|root,COG2133@1|root,COG3241@1|root,COG3828@1|root,COG1413@2|Bacteria,COG2133@2|Bacteria,COG3241@2|Bacteria,COG3828@2|Bacteria,4NQ6P@976|Bacteroidetes,1I34Z@117743|Flavobacteriia 976|Bacteroidetes C PFAM Copper binding proteins, plastocyanin azurin family - - - - - - - - - - - - BetaGal_dom4_5,Copper-bind,ThuA DYD3_k127_6909158_1 700598.Niako_2108 2.853e-161 509.0 COG0296@1|root,COG0296@2|Bacteria,4NECZ@976|Bacteroidetes 976|Bacteroidetes G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position glgB - 2.4.1.18 ko:K00700 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R02110 - ko00000,ko00001,ko00002,ko01000,ko04147 - CBM48,GH13 - Alpha-amylase,Alpha-amylase_C,CBM_48 DYD3_k127_6909158_2 700598.Niako_2107 5.729e-139 449.0 COG0457@1|root,COG0457@2|Bacteria 700598.Niako_2107|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD3_k127_6909158_0 925409.KI911562_gene2074 4.027e-271 845.0 COG0018@1|root,COG0018@2|Bacteria,4NE7Q@976|Bacteroidetes,1IQGR@117747|Sphingobacteriia 976|Bacteroidetes J Arginyl-tRNA synthetase argS GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 ko:K01887 ko00970,map00970 M00359,M00360 R03646 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d DYD3_k127_6909158_3 700598.Niako_2105 7.523e-62 216.0 COG2246@1|root,COG2246@2|Bacteria,4NSQN@976|Bacteroidetes,1ITAX@117747|Sphingobacteriia 976|Bacteroidetes S GtrA-like protein - - - - - - - - - - - - GtrA DYD3_k127_6909158_4 865937.Gilli_1034 3.409e-58 207.0 COG3621@1|root,COG3621@2|Bacteria,4NG71@976|Bacteroidetes,1HY7V@117743|Flavobacteriia 976|Bacteroidetes S COG3621 Patatin - - - ko:K06900 - - - - ko00000 - - - Patatin DYD3_k127_6917558_2 926549.KI421517_gene1466 2.869e-15 84.0 COG2353@1|root,COG2353@2|Bacteria,4PNPU@976|Bacteroidetes,47YDS@768503|Cytophagia 976|Bacteroidetes S YceI-like domain - - - - - - - - - - - - - DYD3_k127_6917558_0 700598.Niako_7358 5.585e-87 289.0 COG0112@1|root,COG0112@2|Bacteria,4NE30@976|Bacteroidetes,1IPUW@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism glyA - 2.1.2.1 ko:K00600 ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523 M00140,M00141,M00346,M00532 R00945,R09099 RC00022,RC00112,RC01583,RC02958 ko00000,ko00001,ko00002,ko01000 - - - SHMT DYD3_k127_6917673_1 504728.K649_03245 9.605e-116 380.0 COG4638@1|root,COG4638@2|Bacteria 2|Bacteria P Rieske (2fe-2S) - - 1.14.15.7 ko:K00499 ko00260,map00260 - R07409 RC00087 ko00000,ko00001,ko01000 - - - Rieske,Ring_hydroxyl_A DYD3_k127_6917673_2 1122605.KB893626_gene2642 1.09e-96 319.0 COG1082@1|root,COG1082@2|Bacteria,4NFKF@976|Bacteroidetes,1J11D@117747|Sphingobacteriia 976|Bacteroidetes G Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 DYD3_k127_6917673_3 700598.Niako_1012 1.342e-53 198.0 2E9XE@1|root,33436@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_6917673_0 700598.Niako_1009 1.777e-192 602.0 COG0459@1|root,COG0459@2|Bacteria,4NDZM@976|Bacteroidetes,1INP2@117747|Sphingobacteriia 976|Bacteroidetes O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groL GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 DYD3_k127_6941179_0 1123276.KB893290_gene5291 3.911e-153 518.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NK8Q@976|Bacteroidetes,47KVN@768503|Cytophagia 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_6965883_0 1239962.C943_04408 1.683e-88 305.0 COG0457@1|root,COG4585@1|root,COG0457@2|Bacteria,COG4585@2|Bacteria,4NI1V@976|Bacteroidetes,47Q3Z@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_10,TPR_12,TPR_8 DYD3_k127_6965883_1 1122605.KB893643_gene730 1.132e-69 243.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,1ITQW@117747|Sphingobacteriia 976|Bacteroidetes T COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_6965883_2 700598.Niako_2938 5.449e-26 112.0 2DFCI@1|root,2ZRBH@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_6967320_2 926556.Echvi_3095 1.431e-71 248.0 COG3119@1|root,COG3119@2|Bacteria,4NHH7@976|Bacteroidetes,47JYR@768503|Cytophagia 976|Bacteroidetes P PFAM sulfatase - - - - - - - - - - - - DUF4976,Sulfatase DYD3_k127_6967320_3 700598.Niako_6720 4.469e-25 108.0 COG2608@1|root,COG2608@2|Bacteria 2|Bacteria P mercury ion transmembrane transporter activity merP - - ko:K07213,ko:K08364 ko04978,map04978 - - - ko00000,ko00001,ko02000 1.A.72.1 - - HMA DYD3_k127_6967320_4 700598.Niako_6721 4.597e-24 105.0 2E5Q2@1|root,330EP@2|Bacteria,4NUMS@976|Bacteroidetes,1IUIW@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6967320_1 700598.Niako_6722 9.679e-93 307.0 COG1595@1|root,COG1595@2|Bacteria,4NN4K@976|Bacteroidetes,1IT6N@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily fecI - - - - - - - - - - - Sigma70_r2,Sigma70_r4,Sigma70_r4_2 DYD3_k127_6967320_0 700598.Niako_6723 1.852e-128 418.0 COG1801@1|root,COG1801@2|Bacteria,4NHAD@976|Bacteroidetes,1IP8N@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD3_k127_6968817_1 700598.Niako_6197 1.831e-110 362.0 COG1752@1|root,COG1752@2|Bacteria,4NUHF@976|Bacteroidetes 976|Bacteroidetes S Esterase of the alpha-beta hydrolase superfamily - - - - - - - - - - - - Patatin DYD3_k127_6968817_2 1454007.JAUG01000002_gene2984 5.274e-74 261.0 COG3325@1|root,COG3325@2|Bacteria,4PHXM@976|Bacteroidetes,1IW9E@117747|Sphingobacteriia 976|Bacteroidetes G Glyco_18 - - - - - - - - - - - - Glyco_hydro_18 DYD3_k127_6968817_0 700598.Niako_6196 0.0 1020.0 COG3591@1|root,COG3591@2|Bacteria,4NEAK@976|Bacteroidetes,1IPZY@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase S46 dpp7 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - - - - - - - - - - Peptidase_S46 DYD3_k127_6971795_0 700598.Niako_2052 2.305e-198 625.0 COG2304@1|root,COG2304@2|Bacteria,4NFX3@976|Bacteroidetes,1IP2T@117747|Sphingobacteriia 976|Bacteroidetes P von Willebrand factor, type A - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - CarbopepD_reg_2,DUF3520,VWA,vWF_A DYD3_k127_6971795_1 700598.Niako_2051 2.705e-59 207.0 COG2947@1|root,COG2947@2|Bacteria,4NNQG@976|Bacteroidetes,1ISGG@117747|Sphingobacteriia 976|Bacteroidetes S EVE domain - - - - - - - - - - - - EVE DYD3_k127_6975274_0 700598.Niako_6014 2.407e-245 764.0 COG2204@1|root,COG2204@2|Bacteria,4NE89@976|Bacteroidetes,1IVPP@117747|Sphingobacteriia 976|Bacteroidetes T COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - - - - - - - - - - Response_reg,Sigma54_activat DYD3_k127_6975274_1 700598.Niako_6013 1.233e-89 302.0 COG0642@1|root,COG0784@1|root,COG2198@1|root,COG0784@2|Bacteria,COG2198@2|Bacteria,COG2205@2|Bacteria,4NDXU@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Hpt,PAS_4,PAS_9,Response_reg DYD3_k127_6975274_2 929713.NIASO_12765 8.839e-38 142.0 COG3063@1|root,COG3063@2|Bacteria 2|Bacteria NU photosynthesis - - - - - - - - - - - - ANAPC5,TPR_16,TPR_8 DYD3_k127_69768_3 1107311.Q767_15140 3.896e-24 104.0 298UU@1|root,2ZVYZ@2|Bacteria,4NPH1@976|Bacteroidetes,1I8RV@117743|Flavobacteriia,2NWGH@237|Flavobacterium 976|Bacteroidetes S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 DYD3_k127_69768_5 700598.Niako_5980 4.992e-11 67.0 COG2867@1|root,COG2867@2|Bacteria,4P2XU@976|Bacteroidetes 976|Bacteroidetes I Polyketide cyclase / dehydrase and lipid transport - - - - - - - - - - - - Polyketide_cyc2 DYD3_k127_69768_0 760192.Halhy_1074 7.158e-111 365.0 COG4447@1|root,COG4447@2|Bacteria,4NHFZ@976|Bacteroidetes,1IRR7@117747|Sphingobacteriia 976|Bacteroidetes S cellulose binding - - - - - - - - - - - - BNR DYD3_k127_69768_2 1042377.AFPJ01000051_gene33 6.953e-80 276.0 COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,1RYRB@1236|Gammaproteobacteria,46479@72275|Alteromonadaceae 1236|Gammaproteobacteria S COG0491 Zn-dependent hydrolases, including glyoxylases - - - - - - - - - - - - Lactamase_B DYD3_k127_69768_4 1453498.LG45_05860 1.946e-13 81.0 COG5295@1|root,COG5295@2|Bacteria,4NE4G@976|Bacteroidetes,1HY8R@117743|Flavobacteriia,2NUIA@237|Flavobacterium 976|Bacteroidetes UW Hep Hag repeat protein - - - - - - - - - - - - - DYD3_k127_69768_1 700598.Niako_4282 3.735e-92 319.0 COG1520@1|root,COG1520@2|Bacteria,4NZRS@976|Bacteroidetes 2|Bacteria S Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - ko:K17713 - - - - ko00000,ko02000 1.B.33.1 - - PQQ_2,SLH,SprB,VCBS DYD3_k127_6981729_4 700598.Niako_0146 6.976e-22 96.0 COG1131@1|root,COG1131@2|Bacteria,4NFRV@976|Bacteroidetes,1IQ31@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter cbiO - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_6981729_1 700598.Niako_0147 1.631e-79 273.0 2E4AF@1|root,32Z65@2|Bacteria,4NXYT@976|Bacteroidetes,1IU8Y@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_6981729_2 700598.Niako_0148 5.438e-68 231.0 COG1725@1|root,COG1725@2|Bacteria,4NT1X@976|Bacteroidetes,1IT33@117747|Sphingobacteriia 976|Bacteroidetes K GntR family - - - - - - - - - - - - GntR DYD3_k127_6981729_0 760192.Halhy_3635 3.452e-100 335.0 COG1131@1|root,COG1131@2|Bacteria,4NFNM@976|Bacteroidetes,1IUZA@117747|Sphingobacteriia 976|Bacteroidetes V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K20459 ko02010,map02010 M00813 - - ko00000,ko00001,ko00002,ko02000 3.A.1.124.3,3.A.1.124.4,3.A.1.124.5 - - ABC_tran DYD3_k127_6981729_3 1124780.ANNU01000002_gene1503 5.303e-31 131.0 COG4200@1|root,COG4200@2|Bacteria,4NSB7@976|Bacteroidetes,47S9M@768503|Cytophagia 976|Bacteroidetes S ABC-2 family transporter protein - - - ko:K20461 ko02010,map02010 M00813 - - ko00000,ko00001,ko00002,ko02000 3.A.1.124.3,3.A.1.124.4,3.A.1.124.5 - - ABC2_membrane_4 DYD3_k127_6987424_0 697282.Mettu_1888 2.191e-123 408.0 COG0589@1|root,COG0659@1|root,COG0589@2|Bacteria,COG0659@2|Bacteria,1MVWV@1224|Proteobacteria,1RMCN@1236|Gammaproteobacteria 1224|Proteobacteria P COG0659 Sulfate permease and related transporters (MFS superfamily) - - 4.2.1.1 ko:K01673,ko:K03321 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000,ko02000 2.A.53.3 - - Pro_CA,STAS,STAS_2,Sulfate_transp DYD3_k127_6987424_1 1237149.C900_04112 1.421e-70 246.0 COG0288@1|root,COG0288@2|Bacteria,4NH0X@976|Bacteroidetes,47PCP@768503|Cytophagia 976|Bacteroidetes P Reversible hydration of carbon dioxide - - 4.2.1.1 ko:K01673 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Pro_CA DYD3_k127_6987424_2 641524.ADICYQ_5525 1.753e-10 64.0 COG2152@1|root,COG2152@2|Bacteria,4NG7B@976|Bacteroidetes,47MHY@768503|Cytophagia 976|Bacteroidetes G beta-1,4-mannooligosaccharide phosphorylase - - 3.2.1.197 ko:K21065 - - R11544 RC00049 ko00000,ko01000 - - - Glyco_hydro_130 DYD3_k127_6988793_1 1300143.CCAV010000001_gene1111 5.116e-08 59.0 COG1361@1|root,COG2885@1|root,COG1361@2|Bacteria,COG2885@2|Bacteria,4NN5D@976|Bacteroidetes,1I5V0@117743|Flavobacteriia,3ZPRU@59732|Chryseobacterium 976|Bacteroidetes M Conserved repeat domain - - - - - - - - - - - - - DYD3_k127_6988793_0 929556.Solca_2138 7.967e-199 657.0 COG3209@1|root,COG3209@2|Bacteria,4NF0G@976|Bacteroidetes,1IVJJ@117747|Sphingobacteriia 976|Bacteroidetes M Salmonella virulence plasmid 65kDa B protein - - - - - - - - - - - - SpvB,TcdB_toxin_midC,TcdB_toxin_midN DYD3_k127_6988799_0 760192.Halhy_5351 5.722e-31 130.0 COG1807@1|root,COG1807@2|Bacteria,4NPS7@976|Bacteroidetes 976|Bacteroidetes M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - - - - - - - - - - - DYD3_k127_6988799_1 1227739.Hsw_3958 2.093e-11 76.0 COG1807@1|root,COG1807@2|Bacteria,4NXAC@976|Bacteroidetes,47U1K@768503|Cytophagia 976|Bacteroidetes M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - PMT_2 DYD3_k127_6990652_4 1166018.FAES_3599 7.974e-10 59.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,47KT8@768503|Cytophagia 976|Bacteroidetes P TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_6990652_0 1166018.FAES_3600 3.977e-241 755.0 COG0614@1|root,COG0614@2|Bacteria,4PKT3@976|Bacteroidetes,47YRH@768503|Cytophagia 976|Bacteroidetes P Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_6990652_3 1166018.FAES_2161 9.005e-89 306.0 2C0N3@1|root,2Z8N4@2|Bacteria,4NJ1V@976|Bacteroidetes,47QZC@768503|Cytophagia 976|Bacteroidetes S SusE outer membrane protein - - - ko:K21571 - - - - ko00000 - - - SusE DYD3_k127_6990652_1 485918.Cpin_1592 1.194e-123 407.0 COG4833@1|root,COG4833@2|Bacteria,4NEI3@976|Bacteroidetes,1IS0H@117747|Sphingobacteriia 976|Bacteroidetes G PFAM Glycoside hydrolase, family 76 - - - - - - - - - - - - Glyco_hydro_76 DYD3_k127_6990652_2 471854.Dfer_2597 4.592e-116 385.0 COG4833@1|root,COG4833@2|Bacteria,4NF5Z@976|Bacteroidetes,47RA4@768503|Cytophagia 976|Bacteroidetes G Glycosyl hydrolase family 76 - - - - - - - - - - - - Glyco_hydro_76 DYD3_k127_7001378_0 700598.Niako_6648 7.21e-265 828.0 COG1409@1|root,COG4775@1|root,COG1409@2|Bacteria,COG4775@2|Bacteria,4NF9N@976|Bacteroidetes,1IPKR@117747|Sphingobacteriia 976|Bacteroidetes M metallophosphoesterase - - - - - - - - - - - - Bac_surface_Ag,Metallophos DYD3_k127_7001378_1 700598.Niako_6649 2.355e-110 363.0 COG3204@1|root,COG3204@2|Bacteria,4NNIP@976|Bacteroidetes,1IRZU@117747|Sphingobacteriia 976|Bacteroidetes S SdiA-regulated - - - - - - - - - - - - SdiA-regulated DYD3_k127_7001378_2 1123248.KB893314_gene3618 4.951e-17 84.0 COG3637@1|root,COG3637@2|Bacteria 2|Bacteria M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - ko:K12976 - - - - ko00000,ko01000,ko01005 - - - OMP_b-brl DYD3_k127_7017172_1 700598.Niako_5402 4.606e-53 188.0 COG2135@1|root,COG2135@2|Bacteria,4P2FJ@976|Bacteroidetes,1IX8T@117747|Sphingobacteriia 976|Bacteroidetes S Belongs to the SOS response-associated peptidase family - - - - - - - - - - - - SRAP DYD3_k127_7017172_0 1123248.KB893348_gene293 2.329e-165 539.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4NK8Q@976|Bacteroidetes 976|Bacteroidetes T Two component regulator propeller - - - - - - - - - - - - HTH_18,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_7018311_5 700598.Niako_6608 1.45e-25 105.0 COG0590@1|root,COG0590@2|Bacteria,4NNJ2@976|Bacteroidetes,1ISDN@117747|Sphingobacteriia 976|Bacteroidetes FJ Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) tadA - 3.5.4.33 ko:K11991 - - R10223 RC00477 ko00000,ko01000,ko03016 - - - MafB19-deam,dCMP_cyt_deam_1 DYD3_k127_7018311_1 1150600.ADIARSV_0368 9.723e-140 458.0 COG0521@1|root,COG0521@2|Bacteria,4NIN3@976|Bacteroidetes,1IR4E@117747|Sphingobacteriia 976|Bacteroidetes H Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like,SusD-like_2 DYD3_k127_7018311_0 929556.Solca_3442 0.0 1074.0 COG4206@1|root,COG4774@1|root,COG4206@2|Bacteria,COG4774@2|Bacteria,4NZWU@976|Bacteroidetes 976|Bacteroidetes H TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_7018311_3 700598.Niako_6605 2.589e-110 366.0 COG3712@1|root,COG3712@2|Bacteria,4NNGS@976|Bacteroidetes,1ISI5@117747|Sphingobacteriia 976|Bacteroidetes PT Domain of unknown function (DUF4974) - - - - - - - - - - - - DUF4974,FecR DYD3_k127_7018311_4 700598.Niako_6604 1.533e-69 240.0 COG1595@1|root,COG1595@2|Bacteria,4NSAE@976|Bacteroidetes,1ITBH@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_7018311_2 1267211.KI669560_gene273 3.568e-111 362.0 COG0605@1|root,COG0605@2|Bacteria,4NDZ4@976|Bacteroidetes,1IQF9@117747|Sphingobacteriia 976|Bacteroidetes P Destroys radicals which are normally produced within the cells and which are toxic to biological systems sodA - 1.15.1.1 ko:K04564 ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016 - - - ko00000,ko00001,ko01000 - - - Sod_Fe_C,Sod_Fe_N DYD3_k127_7023436_5 1454007.JAUG01000002_gene3010 6.313e-58 212.0 2D63Q@1|root,32PM1@2|Bacteria,4PAQB@976|Bacteroidetes,1IX98@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7023436_6 485918.Cpin_6597 1.087e-34 138.0 COG2608@1|root,COG2608@2|Bacteria,4NZ95@976|Bacteroidetes,1IYPT@117747|Sphingobacteriia 976|Bacteroidetes P Heavy-metal-associated domain - - - - - - - - - - - - HMA DYD3_k127_7023436_7 457424.BFAG_03638 1.478e-12 73.0 2ACE7@1|root,311ZQ@2|Bacteria,4PGUK@976|Bacteroidetes,2FYXK@200643|Bacteroidia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7023436_0 700598.Niako_0382 4.186e-279 872.0 COG4206@1|root,COG4206@2|Bacteria,4NI2R@976|Bacteroidetes,1ISVQ@117747|Sphingobacteriia 976|Bacteroidetes H Putative porin - - - - - - - - - - - - Porin_10 DYD3_k127_7023436_3 700598.Niako_0381 1.555e-126 411.0 COG0005@1|root,COG0005@2|Bacteria,4NE4J@976|Bacteroidetes,1IQGT@117747|Sphingobacteriia 976|Bacteroidetes F The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate deoD - 2.4.2.1 ko:K03783 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R01561,R01863,R01969,R02147,R02294,R02295,R02297,R02484,R02557,R02748,R08368,R10244 RC00033,RC00063,RC00122 ko00000,ko00001,ko01000 - - - PNP_UDP_1 DYD3_k127_7023436_2 700598.Niako_0824 1.963e-153 507.0 COG3291@1|root,COG4886@1|root,COG3291@2|Bacteria,COG4886@2|Bacteria,4NDZQ@976|Bacteroidetes,1IS57@117747|Sphingobacteriia 976|Bacteroidetes S C-terminal domain of CHU protein family - - - - - - - - - - - - CHU_C,HYR,SprB DYD3_k127_7023436_4 700598.Niako_1363 4.485e-95 320.0 2DBS0@1|root,2ZANT@2|Bacteria,4NQP3@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7023436_1 700598.Niako_0380 3.756e-219 682.0 COG0045@1|root,COG0045@2|Bacteria,4NFHA@976|Bacteroidetes,1IQ0Q@117747|Sphingobacteriia 976|Bacteroidetes C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit sucC - 6.2.1.5 ko:K01903 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00405,R02404 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp_2,Ligase_CoA DYD3_k127_7025588_1 700598.Niako_7316 2.711e-143 459.0 COG0275@1|root,COG0275@2|Bacteria,4NFQB@976|Bacteroidetes,1INNA@117747|Sphingobacteriia 976|Bacteroidetes M Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA rsmH GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 ko:K03438 - - - - ko00000,ko01000,ko03009 - - - Methyltransf_5 DYD3_k127_7025588_3 700598.Niako_7315 2.055e-83 278.0 COG2001@1|root,COG2001@2|Bacteria,4NM4X@976|Bacteroidetes,1IS84@117747|Sphingobacteriia 976|Bacteroidetes K Belongs to the MraZ family mraZ GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - ko:K03925 - - - - ko00000 - - - MraZ DYD3_k127_7025588_0 700598.Niako_7312 3.841e-155 500.0 COG0809@1|root,COG0809@2|Bacteria,4NDZ5@976|Bacteroidetes,1IWHH@117747|Sphingobacteriia 976|Bacteroidetes J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA - 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth DYD3_k127_7025588_5 700598.Niako_7311 5.939e-23 108.0 COG5002@1|root,COG5002@2|Bacteria,4PKBV@976|Bacteroidetes,1J0U6@117747|Sphingobacteriia 976|Bacteroidetes T His Kinase A (phosphoacceptor) domain rprX - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA DYD3_k127_7025588_2 700598.Niako_7311 3.005e-119 385.0 COG5002@1|root,COG5002@2|Bacteria,4PKBV@976|Bacteroidetes,1J0U6@117747|Sphingobacteriia 976|Bacteroidetes T His Kinase A (phosphoacceptor) domain rprX - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA DYD3_k127_7029978_0 1121904.ARBP01000024_gene6636 1.421e-161 536.0 COG1629@1|root,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,47KT8@768503|Cytophagia 976|Bacteroidetes P TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_7036195_0 1408813.AYMG01000031_gene1498 0.0 1050.0 COG3250@1|root,COG3250@2|Bacteria,4NF4T@976|Bacteroidetes,1IVA8@117747|Sphingobacteriia 976|Bacteroidetes G Beta galactosidase small chain - - - - - - - - - - - - Bgal_small_N,Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N DYD3_k127_7036195_2 700598.Niako_6943 1.277e-70 241.0 29PQU@1|root,30AP1@2|Bacteria,4NP4D@976|Bacteroidetes,1IXH6@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1203) - - - - - - - - - - - - DUF1203 DYD3_k127_7036195_1 493475.GARC_2162 6.297e-98 332.0 COG0745@1|root,COG3292@1|root,COG5002@1|root,COG0745@2|Bacteria,COG3292@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,1T1JE@1236|Gammaproteobacteria 1236|Gammaproteobacteria T Histidine kinase - - - - - - - - - - - - CHASE,GAF_2,GGDEF,HAMP,HATPase_c,HTH_18,HisKA,Hpt,MASE1,PAS,PAS_3,PAS_4,PAS_8,PAS_9,Phosphonate-bd,Reg_prop,Response_reg,TarH,Y_Y_Y DYD3_k127_7047649_0 700598.Niako_2380 0.0 1550.0 COG1501@1|root,COG1501@2|Bacteria,4NE1H@976|Bacteroidetes,1IQRN@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 31 family - - 3.2.1.177 ko:K01811 - - - - ko00000,ko01000 - GH31 - DUF4968,DUF5110,Gal_mutarotas_2,Glyco_hydro_31,PA14 DYD3_k127_7047649_1 714943.Mucpa_1827 0.0 1095.0 COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,4NDXS@976|Bacteroidetes,1IPZ2@117747|Sphingobacteriia 976|Bacteroidetes P TonB-linked outer membrane protein, SusC RagA family - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_7049035_0 700598.Niako_5521 3.645e-264 828.0 COG2812@1|root,COG2812@2|Bacteria,4NE8A@976|Bacteroidetes,1IQ35@117747|Sphingobacteriia 976|Bacteroidetes L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity dnaX - 2.7.7.7 ko:K02343 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNA_pol3_gamma3 DYD3_k127_7049035_1 700598.Niako_5520 2.591e-96 318.0 COG1309@1|root,COG1309@2|Bacteria,4NMR8@976|Bacteroidetes,1ISZ6@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator, TetR family - - - - - - - - - - - - TetR_N,WHG DYD3_k127_7049035_2 700598.Niako_5519 1.192e-52 189.0 COG1538@1|root,COG1538@2|Bacteria,4NE4S@976|Bacteroidetes,1IQ6M@117747|Sphingobacteriia 976|Bacteroidetes MU outer membrane efflux protein - - - - - - - - - - - - OEP DYD3_k127_7049637_3 509635.N824_05970 2.171e-58 209.0 2C9AB@1|root,2ZB91@2|Bacteria,4NKQ3@976|Bacteroidetes,1IU66@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7049637_0 509635.N824_05975 2.873e-236 748.0 COG1629@1|root,COG4771@2|Bacteria,4PKRZ@976|Bacteroidetes,1J0Q2@117747|Sphingobacteriia 976|Bacteroidetes P Carboxypeptidase regulatory-like domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_7049637_1 700598.Niako_1484 1.034e-106 349.0 COG3279@1|root,COG3279@2|Bacteria,4NI3K@976|Bacteroidetes,1J04E@117747|Sphingobacteriia 976|Bacteroidetes K Response regulator of the LytR AlgR family - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_7049637_2 700598.Niako_1483 2.182e-67 233.0 COG2972@1|root,COG2972@2|Bacteria,4NHM5@976|Bacteroidetes,1IVD5@117747|Sphingobacteriia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c_5,His_kinase DYD3_k127_7057413_1 700598.Niako_0333 5.461e-252 793.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,4NF70@976|Bacteroidetes,1IPE8@117747|Sphingobacteriia 976|Bacteroidetes EU Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - - - - - - - - - - DPPIV_N,PD40,Peptidase_S9 DYD3_k127_7057413_0 700598.Niako_0334 1.716e-252 785.0 COG2239@1|root,COG2239@2|Bacteria,4NGGN@976|Bacteroidetes,1IPNC@117747|Sphingobacteriia 976|Bacteroidetes P Acts as a magnesium transporter mgtE - - ko:K06213 - - - - ko00000,ko02000 1.A.26.1 - - CBS,MgtE,MgtE_N DYD3_k127_7057413_6 700598.Niako_0335 1.964e-19 89.0 COG2940@1|root,COG2940@2|Bacteria,4P66M@976|Bacteroidetes,1IYW5@117747|Sphingobacteriia 976|Bacteroidetes S SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - ko:K07117 - - - - ko00000 - - - SET DYD3_k127_7057413_5 700598.Niako_0335 5.388e-27 110.0 COG2940@1|root,COG2940@2|Bacteria,4P66M@976|Bacteroidetes,1IYW5@117747|Sphingobacteriia 976|Bacteroidetes S SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - ko:K07117 - - - - ko00000 - - - SET DYD3_k127_7057413_4 504472.Slin_4886 1.086e-35 152.0 COG3266@1|root,COG3266@2|Bacteria,4NKN6@976|Bacteroidetes,47NWQ@768503|Cytophagia 976|Bacteroidetes S domain, Protein - - - - - - - - - - - - OMP_b-brl,OMP_b-brl_2 DYD3_k127_7057413_3 700598.Niako_0337 1.489e-100 332.0 COG1595@1|root,COG1595@2|Bacteria,4NKHT@976|Bacteroidetes,1ISQP@117747|Sphingobacteriia 976|Bacteroidetes K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_7057413_2 700598.Niako_0338 3.397e-225 705.0 28M10@1|root,2ZAFW@2|Bacteria,4NIF8@976|Bacteroidetes,1ISGZ@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4403) - - - - - - - - - - - - DUF4403 DYD3_k127_7092929_8 1434325.AZQN01000004_gene1625 2.967e-66 236.0 2E08S@1|root,32VWE@2|Bacteria,4P394@976|Bacteroidetes,47UXB@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7092929_7 1123276.KB893269_gene4771 2.247e-73 256.0 COG2207@1|root,COG2207@2|Bacteria,4NJUT@976|Bacteroidetes 976|Bacteroidetes K Transcriptional regulator (AraC family) - - - - - - - - - - - - HTH_18 DYD3_k127_7092929_3 1123248.KB893326_gene1507 1.646e-148 478.0 COG0332@1|root,COG0332@2|Bacteria,4NEZE@976|Bacteroidetes,1IX1S@117747|Sphingobacteriia 976|Bacteroidetes I 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III fabH1 - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C DYD3_k127_7092929_5 509635.N824_00280 1.523e-80 270.0 COG1132@1|root,COG1132@2|Bacteria,4NEBS@976|Bacteroidetes,1IPIB@117747|Sphingobacteriia 976|Bacteroidetes V ABC transporter - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran DYD3_k127_7092929_0 1122605.KB893637_gene3265 4.371e-289 896.0 COG4409@1|root,COG4409@2|Bacteria,4P27R@976|Bacteroidetes 976|Bacteroidetes G BNR repeat-like domain - - - - - - - - - - - - BNR_2 DYD3_k127_7092929_4 1122605.KB893637_gene3262 8.102e-141 454.0 COG0111@1|root,COG0111@2|Bacteria,4NE9J@976|Bacteroidetes 976|Bacteroidetes EH PFAM D-isomer specific 2-hydroxyacid dehydrogenase ghrA - 1.1.1.79,1.1.1.81 ko:K12972 ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00260,map00620,map00630,map01100,map01110,map01120 - R00465,R01388,R01392,R02527 RC00031,RC00042,RC00670 ko00000,ko00001,ko01000 - - - 2-Hacid_dh_C DYD3_k127_7092929_6 1122605.KB893637_gene3261 4.677e-80 269.0 COG4948@1|root,COG4948@2|Bacteria,4NIIJ@976|Bacteroidetes,1IQE9@117747|Sphingobacteriia 976|Bacteroidetes M Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - 5.5.1.27 ko:K18983 ko00053,map00053 - R10847 RC03287 ko00000,ko00001,ko01000 - - - MR_MLE_C,MR_MLE_N DYD3_k127_7094673_3 925409.KI911562_gene1113 4.412e-75 259.0 COG1801@1|root,COG1801@2|Bacteria,4NHAD@976|Bacteroidetes,1IP8N@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 DYD3_k127_7094673_1 1123277.KB893196_gene4962 6.122e-138 443.0 COG3386@1|root,COG3386@2|Bacteria,4NF4A@976|Bacteroidetes,47JC9@768503|Cytophagia 976|Bacteroidetes G PFAM SMP-30 Gluconolaconase - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pectate_lyase_3,SGL DYD3_k127_7094673_0 435590.BVU_0507 5.219e-179 564.0 COG3507@1|root,COG3507@2|Bacteria,4NHV4@976|Bacteroidetes,2FQXI@200643|Bacteroidia,4AK8F@815|Bacteroidaceae 976|Bacteroidetes M Belongs to the glycosyl hydrolase 43 family - - - - - - - - - - - - Glyco_hydro_43 DYD3_k127_7094673_4 509635.N824_20680 4.763e-41 158.0 2CNBE@1|root,32SGQ@2|Bacteria,4NTT1@976|Bacteroidetes,1IZGZ@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7094673_5 1384049.CD29_03070 2.963e-29 123.0 COG0262@1|root,COG0262@2|Bacteria,1TRY1@1239|Firmicutes,4HC69@91061|Bacilli,3IXY2@400634|Lysinibacillus 91061|Bacilli H RibD C-terminal domain yyaP - - - - - - - - - - - RibD_C DYD3_k127_7094673_2 1123248.KB893328_gene913 2.308e-77 263.0 COG1858@1|root,COG1858@2|Bacteria,4NJ4X@976|Bacteroidetes 976|Bacteroidetes P cytochrome C peroxidase - - - - - - - - - - - - - DYD3_k127_7097621_0 925409.KI911562_gene2340 1.802e-189 601.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,4NEHE@976|Bacteroidetes,1INV9@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the PEP-utilizing enzyme family ppsA - 2.7.9.2 ko:K01007 ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200 M00173,M00374 R00199 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N DYD3_k127_7097621_2 700598.Niako_3262 6.817e-69 240.0 2DZRB@1|root,32VGU@2|Bacteria,4NTYB@976|Bacteroidetes,1J159@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7097621_1 700598.Niako_1902 1.212e-150 492.0 COG2989@1|root,COG2989@2|Bacteria,4NH3J@976|Bacteroidetes,1IVG9@117747|Sphingobacteriia 976|Bacteroidetes S L,D-transpeptidase catalytic domain - - - ko:K21470 - - - - ko00000,ko01002,ko01011 - - - PG_binding_1,YkuD DYD3_k127_7097621_3 925409.KI911562_gene2533 3.158e-60 211.0 COG0071@1|root,COG0071@2|Bacteria,4NQXY@976|Bacteroidetes 976|Bacteroidetes O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 DYD3_k127_7097621_4 700598.Niako_0195 2.316e-27 115.0 2DREE@1|root,33BDM@2|Bacteria,4NXHP@976|Bacteroidetes 976|Bacteroidetes S Putative Actinobacterial Holin-X, holin superfamily III - - - - - - - - - - - - Phage_holin_3_6 DYD3_k127_7099115_2 700598.Niako_2029 1.677e-43 160.0 COG0545@1|root,COG0545@2|Bacteria,4NDW4@976|Bacteroidetes,1IXT3@117747|Sphingobacteriia 976|Bacteroidetes O Domain amino terminal to FKBP-type peptidyl-prolyl isomerase fklB - 5.2.1.8 ko:K03772,ko:K03773 - - - - ko00000,ko01000,ko03110 - - - FKBP_C,FKBP_N DYD3_k127_7099115_1 1267211.KI669560_gene1832 8.052e-189 606.0 COG2866@1|root,COG2866@2|Bacteria,4NHBS@976|Bacteroidetes 976|Bacteroidetes E Zinc carboxypeptidase - - - - - - - - - - - - Peptidase_M14 DYD3_k127_7099115_0 1267211.KI669560_gene1831 5.3e-300 929.0 COG2866@1|root,COG2866@2|Bacteria,4NH4I@976|Bacteroidetes,1IVQ3@117747|Sphingobacteriia 976|Bacteroidetes M Zn_pept - - - - - - - - - - - - Peptidase_M14 DYD3_k127_7101189_0 1267211.KI669560_gene219 0.0 1503.0 COG1629@1|root,COG4771@2|Bacteria,4NDU8@976|Bacteroidetes,1IRK1@117747|Sphingobacteriia 976|Bacteroidetes P CarboxypepD_reg-like domain - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_7101189_1 1267211.KI669560_gene218 2.67e-220 692.0 COG4198@1|root,COG4198@2|Bacteria,4NFUK@976|Bacteroidetes,1IPG4@117747|Sphingobacteriia 976|Bacteroidetes S Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_7101189_2 700598.Niako_0176 2.271e-54 191.0 COG4191@1|root,COG4191@2|Bacteria,4NSNP@976|Bacteroidetes,1ISVX@117747|Sphingobacteriia 976|Bacteroidetes T Protein of unknown function (DUF3467) - - - - - - - - - - - - DUF3467 DYD3_k127_7101189_3 700598.Niako_0177 1.235e-51 185.0 COG2003@1|root,COG2003@2|Bacteria,4NFBF@976|Bacteroidetes,1IRTC@117747|Sphingobacteriia 976|Bacteroidetes L Belongs to the UPF0758 family radC - - ko:K03630 - - - - ko00000 - - - RadC DYD3_k127_7103714_1 700598.Niako_4453 1.425e-68 235.0 COG0757@1|root,COG0757@2|Bacteria,4NNHU@976|Bacteroidetes,1ISBR@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes a trans-dehydration via an enolate intermediate aroQ - 4.2.1.10 ko:K03786 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - - DHquinase_II DYD3_k127_7103714_0 700598.Niako_4454 1.878e-206 645.0 COG0505@1|root,COG0505@2|Bacteria,4NEQI@976|Bacteroidetes,1IPSN@117747|Sphingobacteriia 976|Bacteroidetes F Belongs to the CarA family carA - 6.3.5.5 ko:K01956 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_sm_chain,GATase DYD3_k127_7106378_1 700598.Niako_6342 1.107e-270 850.0 COG0760@1|root,COG0760@2|Bacteria,4NDZZ@976|Bacteroidetes,1INT0@117747|Sphingobacteriia 976|Bacteroidetes O peptidylprolyl isomerase ppiD - 5.2.1.8 ko:K01802,ko:K03770 - - - - ko00000,ko01000,ko03110 - - - Rotamase_2,Rotamase_3,SurA_N_2 DYD3_k127_7106378_8 700598.Niako_6343 3.902e-82 277.0 28NIX@1|root,2ZBK6@2|Bacteria,4NMEI@976|Bacteroidetes,1IS0K@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF2480) - - - - - - - - - - - - DUF2480 DYD3_k127_7106378_5 700598.Niako_6346 1.027e-156 499.0 COG1082@1|root,COG1082@2|Bacteria,4NG1K@976|Bacteroidetes,1IPJ4@117747|Sphingobacteriia 976|Bacteroidetes G Xylose isomerase-like TIM barrel - - - - - - - - - - - - AP_endonuc_2 DYD3_k127_7106378_6 760192.Halhy_2176 1.485e-143 472.0 COG1262@1|root,COG1262@2|Bacteria,4NKVR@976|Bacteroidetes 976|Bacteroidetes S Sulfatase-modifying factor enzyme 1 - - - - - - - - - - - - FGE-sulfatase DYD3_k127_7106378_3 700598.Niako_6347 3.822e-183 578.0 COG0598@1|root,COG0598@2|Bacteria,4NG3C@976|Bacteroidetes,1INUK@117747|Sphingobacteriia 976|Bacteroidetes P Mediates influx of magnesium ions corA - - ko:K03284 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3 - - CorA DYD3_k127_7106378_2 700598.Niako_6349 3.307e-211 658.0 COG1454@1|root,COG1454@2|Bacteria,4PKHV@976|Bacteroidetes 976|Bacteroidetes C alcohol dehydrogenase - - 1.1.3.48 ko:K19714 - - R11394 RC03427 ko00000,ko01000,ko01005 - - - Fe-ADH DYD3_k127_7106378_4 700598.Niako_6353 4.789e-158 505.0 COG1940@1|root,COG1940@2|Bacteria,4NGC1@976|Bacteroidetes,1IURS@117747|Sphingobacteriia 976|Bacteroidetes GK COGs COG1940 Transcriptional regulator sugar kinase - - - - - - - - - - - - ROK DYD3_k127_7106378_7 700598.Niako_6354 1.419e-119 390.0 COG1212@1|root,COG1212@2|Bacteria,4NG4B@976|Bacteroidetes,1IXQH@117747|Sphingobacteriia 976|Bacteroidetes M Cytidylyltransferase kdsB - 1.1.3.48,2.7.7.38 ko:K00979,ko:K19714 ko00540,ko01100,map00540,map01100 M00063 R03351,R11394,R11396 RC00152,RC00910,RC03427 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_3 DYD3_k127_7106378_0 700598.Niako_6355 2.361e-283 874.0 COG2308@1|root,COG2308@2|Bacteria,4NFMN@976|Bacteroidetes,1INRP@117747|Sphingobacteriia 976|Bacteroidetes S Circularly permuted ATP-grasp type 2 - - - - - - - - - - - - CP_ATPgrasp_2 DYD3_k127_7113230_1 1122605.KB893626_gene2592 5.084e-191 600.0 COG1312@1|root,COG1312@2|Bacteria,4NFA5@976|Bacteroidetes,1IW5I@117747|Sphingobacteriia 976|Bacteroidetes G Catalyzes the dehydration of D-mannonate uxuA GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005975,GO:0005996,GO:0006063,GO:0006064,GO:0006082,GO:0008150,GO:0008152,GO:0008198,GO:0008927,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0019585,GO:0019752,GO:0030145,GO:0032787,GO:0042839,GO:0042840,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046365,GO:0046395,GO:0046872,GO:0046914,GO:0071704,GO:0072329,GO:1901575 4.2.1.8 ko:K01686 ko00040,ko01100,map00040,map01100 M00061 R05606 RC00543 ko00000,ko00001,ko00002,ko01000 - - - UxuA DYD3_k127_7113230_2 700598.Niako_2617 9.992e-132 424.0 COG0788@1|root,COG0788@2|Bacteria,4NEGJ@976|Bacteroidetes,1IQCP@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) purU - 3.5.1.10 ko:K01433 ko00630,ko00670,map00630,map00670 - R00944 RC00026,RC00111 ko00000,ko00001,ko01000 - - - ACT,Formyl_trans_N DYD3_k127_7113230_0 925409.KI911562_gene1590 3.665e-219 696.0 COG4888@1|root,COG4888@2|Bacteria,4NEE8@976|Bacteroidetes,1IP40@117747|Sphingobacteriia 976|Bacteroidetes S SPTR ASPIC UnbV domain protein - - - - - - - - - - - - UnbV_ASPIC,VCBS DYD3_k127_7115390_1 929556.Solca_2151 8.144e-49 175.0 COG3628@1|root,COG3628@2|Bacteria,4NSKN@976|Bacteroidetes,1IT77@117747|Sphingobacteriia 976|Bacteroidetes S Phage baseplate assembly protein W - - - ko:K06903 - - - - ko00000 - - - GPW_gp25 DYD3_k127_7115390_0 929556.Solca_2150 0.0 1055.0 COG3299@1|root,COG3299@2|Bacteria,4NF69@976|Bacteroidetes,1INRV@117747|Sphingobacteriia 976|Bacteroidetes S homolog of phage Mu protein gp47 - - - - - - - - - - - - Baseplate_J DYD3_k127_7116100_2 1122605.KB893637_gene3245 1.904e-63 226.0 2BJ20@1|root,32DAN@2|Bacteria,4P1FX@976|Bacteroidetes,1IV5B@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7116100_0 471854.Dfer_1887 1.143e-143 468.0 COG3356@1|root,COG3356@2|Bacteria,4NK35@976|Bacteroidetes,47TXB@768503|Cytophagia 976|Bacteroidetes S PFAM Neutral alkaline nonlysosomal ceramidase - - - - - - - - - - - - - DYD3_k127_7116100_1 1123248.KB893381_gene960 1.375e-132 428.0 COG2207@1|root,COG2207@2|Bacteria,4NE6T@976|Bacteroidetes,1IVDX@117747|Sphingobacteriia 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - AraC_binding,Cupin_2,HTH_18 DYD3_k127_7116100_3 1122605.KB893625_gene1670 3.242e-34 136.0 COG0667@1|root,COG0667@2|Bacteria,4P099@976|Bacteroidetes,1IVJA@117747|Sphingobacteriia 976|Bacteroidetes C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red DYD3_k127_7132849_0 1121897.AUGO01000001_gene1526 9.777e-133 430.0 COG0438@1|root,COG0438@2|Bacteria,4NEJ6@976|Bacteroidetes,1HYVG@117743|Flavobacteriia,2NUAB@237|Flavobacterium 976|Bacteroidetes M Glycosyl transferase family 1 - - - - - - - - - - - - DUF1972,Glycos_transf_1 DYD3_k127_7132849_1 700598.Niako_5571 5.282e-126 414.0 COG0438@1|root,COG0438@2|Bacteria,4NMZ6@976|Bacteroidetes 976|Bacteroidetes M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 DYD3_k127_7132849_2 391587.KAOT1_16958 7.697e-19 98.0 28ICR@1|root,2Z8F0@2|Bacteria,4NHX1@976|Bacteroidetes,1I0RJ@117743|Flavobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7134510_1 1121011.AUCB01000043_gene2280 5.068e-83 314.0 COG3250@1|root,COG3250@2|Bacteria,4NF3W@976|Bacteroidetes,1HWMP@117743|Flavobacteriia,23ICR@178469|Arenibacter 976|Bacteroidetes G Glycosyl hydrolases family 2, TIM barrel domain - - 3.2.1.23 ko:K01190 ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100 - R01105,R01678,R03355,R04783,R06114 RC00049,RC00452 ko00000,ko00001,ko01000 - - - Bgal_small_N,DUF4981,Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N DYD3_k127_7134510_0 1122931.AUAE01000013_gene2114 6.906e-191 644.0 COG1554@1|root,COG1554@2|Bacteria,4NEWW@976|Bacteroidetes,2FMF9@200643|Bacteroidia,22W4V@171551|Porphyromonadaceae 976|Bacteroidetes G Glycosyl hydrolase family 65, N-terminal domain - - - - - - - - - - - - Glyco_hyd_65N_2 DYD3_k127_7139067_7 700598.Niako_5915 1.99e-44 164.0 COG5531@1|root,COG5531@2|Bacteria 2|Bacteria B SWIB/MDM2 domain - - 5.99.1.2 ko:K03169 - - - - ko00000,ko01000,ko03032 - - - SWIB,Topoisom_bac,Toprim,Toprim_Crpt DYD3_k127_7139067_6 700598.Niako_5866 9.704e-84 281.0 COG0652@1|root,COG0652@2|Bacteria,4NRWP@976|Bacteroidetes 976|Bacteroidetes O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - 5.2.1.8 ko:K03767 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase DYD3_k127_7139067_4 1237149.C900_01348 4.119e-132 430.0 COG0476@1|root,COG0476@2|Bacteria,4NFUD@976|Bacteroidetes,47KG8@768503|Cytophagia 976|Bacteroidetes H MoeZ MoeB domain moeZ - 2.7.7.80,2.8.1.11 ko:K21029,ko:K21147 ko04122,map04122 - R07459,R07461 RC00043 ko00000,ko00001,ko01000 - - - Rhodanese,ThiF DYD3_k127_7139067_0 700598.Niako_0099 1.424e-257 802.0 COG0535@1|root,COG0535@2|Bacteria,4NEGK@976|Bacteroidetes,1IQVW@117747|Sphingobacteriia 976|Bacteroidetes S radical SAM domain protein - - - - - - - - - - - - - DYD3_k127_7139067_2 700598.Niako_0100 2.587e-216 675.0 COG0119@1|root,COG0119@2|Bacteria,4NEIT@976|Bacteroidetes,1INXS@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the alpha-IPM synthase homocitrate synthase family leuA - 2.3.3.13 ko:K01649 ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230 M00432 R01213 RC00004,RC00470,RC02754 br01601,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like,LeuA_dimer DYD3_k127_7139067_1 925409.KI911562_gene558 4.463e-239 745.0 COG0065@1|root,COG0065@2|Bacteria,4NG7E@976|Bacteroidetes,1INV1@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuC - 4.2.1.33,4.2.1.35 ko:K01703 ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase DYD3_k127_7139067_5 485918.Cpin_1984 1.167e-84 285.0 COG0066@1|root,COG0066@2|Bacteria,4NDVY@976|Bacteroidetes,1IQ0S@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuD - 4.2.1.33,4.2.1.35 ko:K01704 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R10170 RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase_C DYD3_k127_7139067_3 700598.Niako_0101 4.651e-211 659.0 COG0473@1|root,COG0473@2|Bacteria,4NEBE@976|Bacteroidetes,1INYR@117747|Sphingobacteriia 976|Bacteroidetes C Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate leuB - 1.1.1.85 ko:K00052 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R00994,R04426,R10052 RC00084,RC00417,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh DYD3_k127_7141812_4 700598.Niako_5023 2.537e-32 126.0 COG1091@1|root,COG1091@2|Bacteria,4NE3K@976|Bacteroidetes,1IP3S@117747|Sphingobacteriia 976|Bacteroidetes M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose - - 1.1.1.133 ko:K00067 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R02777 RC00182 ko00000,ko00001,ko00002,ko01000 - - - RmlD_sub_bind DYD3_k127_7141812_0 153721.MYP_560 3.518e-127 418.0 COG0438@1|root,COG0438@2|Bacteria,4NJDH@976|Bacteroidetes,47KT0@768503|Cytophagia 976|Bacteroidetes M Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_trans_1_4 DYD3_k127_7141812_2 700598.Niako_5022 1.077e-86 291.0 28P2C@1|root,2ZBYG@2|Bacteria,4NMEQ@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7141812_3 700598.Niako_5021 4.247e-48 177.0 COG3678@1|root,COG3678@2|Bacteria,4PA3G@976|Bacteroidetes,1IUMB@117747|Sphingobacteriia 976|Bacteroidetes NPTU ATP-independent chaperone mediated protein folding - - - - - - - - - - - - - DYD3_k127_7141812_1 700598.Niako_5019 2.438e-103 338.0 COG1595@1|root,COG1595@2|Bacteria,4NQTP@976|Bacteroidetes,1ITCU@117747|Sphingobacteriia 976|Bacteroidetes K COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_7141959_0 1492737.FEM08_08830 8.063e-76 266.0 COG1680@1|root,COG1680@2|Bacteria,4NI1Z@976|Bacteroidetes,1HYQF@117743|Flavobacteriia,2NT82@237|Flavobacterium 976|Bacteroidetes V beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD3_k127_7141959_1 700598.Niako_1034 5.67e-59 208.0 COG1193@1|root,COG1193@2|Bacteria,4NFE6@976|Bacteroidetes,1IP8R@117747|Sphingobacteriia 976|Bacteroidetes L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity mutS2 - - ko:K07456 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_V,Smr DYD3_k127_7146843_6 700598.Niako_0885 1.316e-08 55.0 COG0187@1|root,COG0187@2|Bacteria,4NF18@976|Bacteroidetes,1IQV0@117747|Sphingobacteriia 976|Bacteroidetes L Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit parE - - ko:K02622 - - - - ko00000,ko01000,ko02048,ko03032,ko03036 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim DYD3_k127_7146843_2 700598.Niako_0886 1.217e-139 447.0 2BH0I@1|root,32B0P@2|Bacteria,4P6EF@976|Bacteroidetes 976|Bacteroidetes S Protein of unknown function - - - - - - - - - - - - DUF1835,DUF3658 DYD3_k127_7146843_0 700598.Niako_0888 0.0 1434.0 COG0188@1|root,COG0188@2|Bacteria,4NERI@976|Bacteroidetes,1IQ9E@117747|Sphingobacteriia 976|Bacteroidetes L COG0188 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) A subunit parC - - ko:K02621 - - - - ko00000,ko01000,ko02048,ko03032,ko03036 - - - DNA_topoisoIV DYD3_k127_7146843_3 700598.Niako_0889 4.124e-114 376.0 2EPP0@1|root,33H9M@2|Bacteria,4NXT6@976|Bacteroidetes,1IYX8@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7146843_4 929713.NIASO_03025 7.156e-67 229.0 COG0691@1|root,COG0691@2|Bacteria,4NNJU@976|Bacteroidetes,1ISGQ@117747|Sphingobacteriia 976|Bacteroidetes O the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA smpB - - ko:K03664 - - - - ko00000 - - - SmpB DYD3_k127_7146843_1 700598.Niako_0891 3.44e-175 551.0 COG0777@1|root,COG0777@2|Bacteria,4NFMH@976|Bacteroidetes,1IPMT@117747|Sphingobacteriia 976|Bacteroidetes I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA accD - 2.1.3.15,6.4.1.2 ko:K01963 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans DYD3_k127_7146843_5 700598.Niako_0892 4.222e-66 228.0 2CAZH@1|root,2Z7RU@2|Bacteria,4NGM5@976|Bacteroidetes,1ISIA@117747|Sphingobacteriia 976|Bacteroidetes S succinate dehydrogenase sdhC - - ko:K00241 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002 - - - - DYD3_k127_7149947_0 700598.Niako_5835 1.609e-241 754.0 COG2204@1|root,COG2204@2|Bacteria,4NE89@976|Bacteroidetes,1INN4@117747|Sphingobacteriia 976|Bacteroidetes T COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - ko:K07713 ko02020,map02020 M00499 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat DYD3_k127_7149947_3 700598.Niako_5836 2.341e-123 419.0 COG4251@1|root,COG4251@2|Bacteria,4NGXA@976|Bacteroidetes,1IT3D@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - CHASE3,HATPase_c,HisKA,PAS_3,PAS_9 DYD3_k127_7149947_1 700598.Niako_5837 6.104e-230 719.0 COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,4PNV2@976|Bacteroidetes,1J0TV@117747|Sphingobacteriia 976|Bacteroidetes T PAS domain - - - - - - - - - - - - HATPase_c,HisKA,Response_reg DYD3_k127_7149947_4 700598.Niako_5838 3.743e-90 301.0 COG3637@1|root,COG3637@2|Bacteria,4NM4E@976|Bacteroidetes,1IT3S@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl,OMP_b-brl_2 DYD3_k127_7149947_2 700598.Niako_5840 1.276e-155 508.0 2C5U1@1|root,2Z80K@2|Bacteria,4NG4G@976|Bacteroidetes,1IQ1S@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7163095_2 929713.NIASO_19295 1.574e-40 158.0 2CEK0@1|root,321UV@2|Bacteria,4NUC9@976|Bacteroidetes,1IUMD@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4271) - - - - - - - - - - - - DUF4271 DYD3_k127_7163095_1 700598.Niako_6852 8.494e-146 470.0 COG1587@1|root,COG1587@2|Bacteria,4NEQ3@976|Bacteroidetes,1IPP4@117747|Sphingobacteriia 976|Bacteroidetes H Uroporphyrinogen-III synthase hemD - 4.2.1.75 ko:K01719 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03165 RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4 DYD3_k127_7163095_0 700598.Niako_6853 3.322e-251 786.0 COG1331@1|root,COG1331@2|Bacteria,4NFE2@976|Bacteroidetes,1IQ72@117747|Sphingobacteriia 976|Bacteroidetes O COG1331 Highly conserved protein containing a thioredoxin domain - - - ko:K06888 - - - - ko00000 - - - GlcNAc_2-epim,Thioredox_DsbH DYD3_k127_7164944_1 1122605.KB893643_gene501 1.652e-58 209.0 COG0220@1|root,COG0220@2|Bacteria,4PM18@976|Bacteroidetes,1ITBB@117747|Sphingobacteriia 976|Bacteroidetes J SPTR Ribosomal protein L11 methyltransferase - - - - - - - - - - - - Methyltransf_31 DYD3_k127_7164944_0 1122605.KB893643_gene502 1.559e-153 491.0 COG0659@1|root,COG0659@2|Bacteria,4NF1C@976|Bacteroidetes,1ISE6@117747|Sphingobacteriia 976|Bacteroidetes P Sulfate permease family sulP - - ko:K03321 - - - - ko00000,ko02000 2.A.53.3 - - STAS,Sulfate_transp DYD3_k127_7174547_8 592029.DDD_2527 5.972e-07 53.0 COG0577@1|root,COG0577@2|Bacteria,4NK72@976|Bacteroidetes,1HXHK@117743|Flavobacteriia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_7174547_1 700598.Niako_3211 9.87e-87 290.0 COG0494@1|root,COG0494@2|Bacteria,4NHER@976|Bacteroidetes,1IRG1@117747|Sphingobacteriia 976|Bacteroidetes L PFAM NUDIX hydrolase nudK - - - - - - - - - - - NUDIX DYD3_k127_7174547_5 1453505.JASY01000018_gene4727 9.198e-54 190.0 COG0494@1|root,COG0494@2|Bacteria,4NR26@976|Bacteroidetes,1I98F@117743|Flavobacteriia 976|Bacteroidetes L nUDIX hydrolase - - - - - - - - - - - - - DYD3_k127_7174547_2 743722.Sph21_2105 5.467e-77 264.0 COG0664@1|root,COG0664@2|Bacteria,4NNEC@976|Bacteroidetes,1J0B3@117747|Sphingobacteriia 976|Bacteroidetes K Transcriptional regulator, Crp Fnr family - - - - - - - - - - - - cNMP_binding DYD3_k127_7174547_0 682795.AciX8_2710 3.11e-123 406.0 COG0477@1|root,COG2814@2|Bacteria,3Y68Y@57723|Acidobacteria,2JKR8@204432|Acidobacteriia 204432|Acidobacteriia EGP Sugar (and other) transporter - - - ko:K07552 - - - - ko00000,ko02000 2.A.1.2 - - MFS_1 DYD3_k127_7174547_6 700598.Niako_5909 1.371e-34 138.0 COG2318@1|root,COG2318@2|Bacteria,4PKC6@976|Bacteroidetes,1J0Q9@117747|Sphingobacteriia 976|Bacteroidetes S DinB superfamily - - - - - - - - - - - - DinB_2 DYD3_k127_7174547_4 1459636.NTE_02189 8.556e-60 213.0 COG0262@1|root,arCOG01490@2157|Archaea 2157|Archaea H Belongs to the dihydrofolate reductase family - - - - - - - - - - - - RibD_C DYD3_k127_7174547_3 1134413.ANNK01000052_gene1160 4.041e-60 214.0 COG1073@1|root,COG1073@2|Bacteria,1V7CZ@1239|Firmicutes,4HJJ0@91061|Bacilli,1ZH0J@1386|Bacillus 91061|Bacilli S Serine hydrolase - - - ko:K07002 - - - - ko00000 - - - Ser_hydrolase DYD3_k127_7174547_7 700598.Niako_1118 1.363e-31 124.0 COG2207@1|root,COG2207@2|Bacteria,4NHA5@976|Bacteroidetes,1IRX9@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator, AraC - - - - - - - - - - - - HTH_18,HTH_AraC DYD3_k127_7177198_4 1237149.C900_04170 2.397e-08 66.0 COG0457@1|root,COG0457@2|Bacteria,4PMCR@976|Bacteroidetes,47V5S@768503|Cytophagia 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - TPR_12 DYD3_k127_7177198_2 700598.Niako_5787 1.123e-93 310.0 293VW@1|root,2ZRB2@2|Bacteria,4NMK7@976|Bacteroidetes,1ISN4@117747|Sphingobacteriia 976|Bacteroidetes S TIGRFAM gliding motility-associated lipoprotein GldD gldD - - - - - - - - - - - - DYD3_k127_7177198_0 700598.Niako_5788 5.23e-200 631.0 COG1253@1|root,COG1253@2|Bacteria,4NDZ7@976|Bacteroidetes,1IVGY@117747|Sphingobacteriia 976|Bacteroidetes S Transporter associated domain gldE - - - - - - - - - - - CBS,CorC_HlyC,DUF21 DYD3_k127_7177198_3 700598.Niako_5789 1.773e-75 255.0 COG0629@1|root,COG0629@2|Bacteria,4NQBK@976|Bacteroidetes,1ISJD@117747|Sphingobacteriia 976|Bacteroidetes L Single-stranded DNA-binding protein - - - ko:K03111 ko03030,ko03430,ko03440,map03030,map03430,map03440 - - - ko00000,ko00001,ko03029,ko03032,ko03400 - - - SSB DYD3_k127_7177198_1 700598.Niako_5791 1.91e-104 344.0 COG1194@1|root,COG1194@2|Bacteria,4NDZY@976|Bacteroidetes,1IPZD@117747|Sphingobacteriia 976|Bacteroidetes L TIGRFAM A G-specific adenine glycosylase mutY - - ko:K03575 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - EndIII_4Fe-2S,HhH-GPD,NUDIX_4 DYD3_k127_7179613_3 700598.Niako_4698 3.944e-84 282.0 COG0127@1|root,COG0127@2|Bacteria,4NM42@976|Bacteroidetes,1IRYX@117747|Sphingobacteriia 976|Bacteroidetes F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions rdgB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 ko:K02428 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000 - - - Ham1p_like DYD3_k127_7179613_2 700598.Niako_4699 1.864e-101 336.0 COG1595@1|root,COG1595@2|Bacteria,4NQCH@976|Bacteroidetes,1ISH7@117747|Sphingobacteriia 976|Bacteroidetes K COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_7179613_5 700598.Niako_4701 1.972e-55 197.0 COG0824@1|root,COG0824@2|Bacteria,4NT54@976|Bacteroidetes 976|Bacteroidetes S Thioesterase-like superfamily - - - - - - - - - - - - 4HBT_2 DYD3_k127_7179613_1 700598.Niako_4702 6.864e-106 348.0 COG0169@1|root,COG0169@2|Bacteria,4NEBJ@976|Bacteroidetes,1IPMJ@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Shikimate dehydrogenase substrate binding aroE - 1.1.1.25 ko:K00014 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02413 RC00206 ko00000,ko00001,ko00002,ko01000 - - - Shikimate_dh_N DYD3_k127_7179613_0 700598.Niako_4703 1.402e-154 490.0 COG1809@1|root,COG1809@2|Bacteria,4NEHT@976|Bacteroidetes,1IPYS@117747|Sphingobacteriia 976|Bacteroidetes S PFAM (2R)-phospho-3-sulfolactate synthase ComA - - 4.4.1.19 ko:K08097 ko00680,ko01120,map00680,map01120 M00358 R07476 RC01799 ko00000,ko00001,ko00002,ko01000 - - - ComA DYD3_k127_7188130_2 700598.Niako_4732 3.593e-66 231.0 COG2148@1|root,COG2148@2|Bacteria,4NFIA@976|Bacteroidetes,1IS31@117747|Sphingobacteriia 976|Bacteroidetes M Bacterial sugar transferase - - - - - - - - - - - - Bac_transf,CoA_binding_3 DYD3_k127_7188130_0 700598.Niako_4733 1.935e-178 563.0 COG0673@1|root,COG0673@2|Bacteria,4NEC6@976|Bacteroidetes,1IX1W@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_7188130_1 700598.Niako_4734 4.708e-87 293.0 COG1376@1|root,COG1376@2|Bacteria,4NNX7@976|Bacteroidetes,1IT01@117747|Sphingobacteriia 976|Bacteroidetes S L,D-transpeptidase catalytic domain - - - - - - - - - - - - YkuD_2 DYD3_k127_7189150_2 1120968.AUBX01000014_gene2505 3.398e-21 94.0 COG3279@1|root,COG3279@2|Bacteria,4NMTK@976|Bacteroidetes,47PS0@768503|Cytophagia 976|Bacteroidetes KT LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_7189150_0 700598.Niako_4738 3.998e-90 311.0 COG2972@1|root,COG2972@2|Bacteria,4NH1Q@976|Bacteroidetes,1IQI1@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - His_kinase DYD3_k127_7189150_1 700598.Niako_4740 7.187e-50 181.0 COG3055@1|root,COG3055@2|Bacteria,4NG50@976|Bacteroidetes,1IRK4@117747|Sphingobacteriia 976|Bacteroidetes DZ Kelch repeat type 1 nanM - - - - - - - - - - - Kelch_1,Kelch_3,Kelch_4,Kelch_6 DYD3_k127_7191467_2 927658.AJUM01000037_gene2105 1.054e-07 63.0 COG2849@1|root,COG2849@2|Bacteria,4NUDS@976|Bacteroidetes,2FTTJ@200643|Bacteroidia,3XK3X@558415|Marinilabiliaceae 976|Bacteroidetes S MORN repeat variant - - - - - - - - - - - - MORN_2 DYD3_k127_7191467_0 700598.Niako_6558 6.177e-134 430.0 COG1028@1|root,COG1028@2|Bacteria,4NIAZ@976|Bacteroidetes 976|Bacteroidetes IQ Enoyl-(Acyl carrier protein) reductase - - - ko:K13775 ko00281,map00281 - R08087,R08096,R10125,R10126 RC00080,RC00087 ko00000,ko00001 - - - adh_short DYD3_k127_7192529_7 765869.BDW_00645 2.181e-10 63.0 COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,42U00@68525|delta/epsilon subdivisions,2MTA6@213481|Bdellovibrionales,2WQD4@28221|Deltaproteobacteria 213481|Bdellovibrionales U PFAM Biopolymer transport protein ExbD TolR tolR - - ko:K03560 - - - - ko00000,ko02000 1.A.30.2.2 - - ExbD DYD3_k127_7192529_8 1307761.L21SP2_0662 0.0001936 52.0 2C1MG@1|root,31CZM@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_7192529_6 700598.Niako_6713 7.202e-23 98.0 2EIKE@1|root,33CBQ@2|Bacteria,4NXKH@976|Bacteroidetes,1IUP3@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7192529_4 485918.Cpin_6307 2.321e-103 342.0 COG0266@1|root,COG0266@2|Bacteria,4NH8P@976|Bacteroidetes,1IR2V@117747|Sphingobacteriia 976|Bacteroidetes L DNA glycosylase AP lyase, H2TH DNA-binding - - 4.2.99.18 ko:K05522 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Fapy_DNA_glyco,H2TH DYD3_k127_7192529_0 700598.Niako_6711 9.57e-205 643.0 COG0577@1|root,COG0577@2|Bacteria,4NEBD@976|Bacteroidetes,1IQQ0@117747|Sphingobacteriia 976|Bacteroidetes V COG0577 ABC-type antimicrobial peptide transport system permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_7192529_3 700598.Niako_6710 4.505e-122 396.0 COG1136@1|root,COG1136@2|Bacteria,4NE5N@976|Bacteroidetes,1IV5C@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1136 ABC-type antimicrobial peptide transport system ATPase component - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran DYD3_k127_7192529_1 700598.Niako_6709 1.051e-176 563.0 COG0845@1|root,COG0845@2|Bacteria,4NFT4@976|Bacteroidetes,1IPMN@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K02005 - - - - ko00000 - - - HlyD_D23 DYD3_k127_7192529_2 700598.Niako_6708 2.465e-167 537.0 COG1538@1|root,COG1538@2|Bacteria,4NEEN@976|Bacteroidetes 976|Bacteroidetes MU Outer membrane efflux protein - - - ko:K12340 ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133 M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko02044 1.B.17,2.A.6.2 - - OEP DYD3_k127_7192529_5 700598.Niako_6707 5.529e-64 220.0 COG1703@1|root,COG1884@1|root,COG2852@1|root,COG1703@2|Bacteria,COG1884@2|Bacteria,COG2852@2|Bacteria,4NFHX@976|Bacteroidetes,1INXI@117747|Sphingobacteriia 976|Bacteroidetes EI Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly icmF - 5.4.99.13 ko:K11942 - - - - ko00000,ko01000 - - - ArgK,B12-binding,MM_CoA_mutase DYD3_k127_7194399_2 700598.Niako_0981 1.51e-195 611.0 COG0205@1|root,COG0205@2|Bacteria,4NF8F@976|Bacteroidetes,1IPUF@117747|Sphingobacteriia 976|Bacteroidetes G Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis pfkA - 2.7.1.11 ko:K00850 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230 M00001,M00345 R00756,R03236,R03237,R03238,R03239,R04779 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000,ko01009,ko03019 - - - PFK DYD3_k127_7194399_1 700598.Niako_0980 5.864e-288 888.0 COG0469@1|root,COG0469@2|Bacteria,4NEEU@976|Bacteroidetes,1IPRW@117747|Sphingobacteriia 976|Bacteroidetes G Belongs to the pyruvate kinase family pyk - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C DYD3_k127_7194399_3 700598.Niako_0979 4.565e-152 486.0 2DB7V@1|root,2Z7NX@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - DYD3_k127_7194399_4 700598.Niako_0978 1.885e-145 468.0 COG3266@1|root,COG3266@2|Bacteria,4NFRK@976|Bacteroidetes,1IPA7@117747|Sphingobacteriia 976|Bacteroidetes S domain, Protein - - - - - - - - - - - - - DYD3_k127_7194399_6 700598.Niako_0976 1.136e-65 225.0 COG0720@1|root,COG0720@2|Bacteria,4NRT5@976|Bacteroidetes,1IT05@117747|Sphingobacteriia 976|Bacteroidetes H COG0720 6-pyruvoyl-tetrahydropterin synthase - - 4.1.2.50,4.2.3.12 ko:K01737 ko00790,ko01100,map00790,map01100 M00842,M00843 R04286,R09959 RC01117,RC02846,RC02847 ko00000,ko00001,ko00002,ko01000,ko03016 - - - PTPS DYD3_k127_7194399_7 485918.Cpin_3095 1.103e-54 197.0 2DKFZ@1|root,309D6@2|Bacteria,4NEGR@976|Bacteroidetes 976|Bacteroidetes S Domain of unknown function (DUF4382) - - - - - - - - - - - - CarboxypepD_reg,DUF4382 DYD3_k127_7194399_5 700598.Niako_0972 1.321e-74 254.0 COG1651@1|root,COG1651@2|Bacteria 2|Bacteria O Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - - - - - - - - - - Thioredoxin_4 DYD3_k127_7194399_0 700598.Niako_0971 0.0 1480.0 COG0542@1|root,COG0542@2|Bacteria,4NGEM@976|Bacteroidetes,1IQP6@117747|Sphingobacteriia 976|Bacteroidetes O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpB - - ko:K03695 ko04213,map04213 - - - ko00000,ko00001,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N DYD3_k127_7194855_0 1123248.KB893337_gene2464 5.471e-118 383.0 COG0247@1|root,COG0247@2|Bacteria,4NIMP@976|Bacteroidetes,1IPJX@117747|Sphingobacteriia 976|Bacteroidetes C Fe-S oxidoreductase - - - ko:K18928 - - - - ko00000 - - - CCG DYD3_k127_7194855_1 1122605.KB893625_gene2239 9.401e-62 217.0 COG0054@1|root,COG0054@2|Bacteria,4NNUC@976|Bacteroidetes,1ISBW@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin ribH GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 ko:K00794 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R04457 RC00960 ko00000,ko00001,ko00002,ko01000 - - - DMRL_synthase DYD3_k127_7194855_2 700598.Niako_2026 3.255e-13 69.0 COG1729@1|root,COG1729@2|Bacteria,4NEM2@976|Bacteroidetes,1IYXS@117747|Sphingobacteriia 976|Bacteroidetes S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_21,TPR_6,TPR_7,TPR_8 DYD3_k127_7204625_2 700598.Niako_0115 2.166e-71 243.0 COG0083@1|root,COG0083@2|Bacteria,4NE2M@976|Bacteroidetes,1IP1D@117747|Sphingobacteriia 976|Bacteroidetes E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate thrB - 2.7.1.39 ko:K00872 ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230 M00018 R01771 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N DYD3_k127_7204625_1 485918.Cpin_4160 1.126e-92 308.0 COG2197@1|root,COG2197@2|Bacteria,4NNEU@976|Bacteroidetes,1J05I@117747|Sphingobacteriia 976|Bacteroidetes K response regulator, receiver - - - - - - - - - - - - GerE,Response_reg DYD3_k127_7204625_0 485918.Cpin_4159 1.084e-250 792.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,4PI9B@976|Bacteroidetes,1IW62@117747|Sphingobacteriia 976|Bacteroidetes T Two component regulator three Y - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_7206397_12 1288298.rosmuc_02203 3.383e-35 137.0 2A76B@1|root,30W2A@2|Bacteria,1RGCK@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - DYD3_k127_7206397_10 768706.Desor_2155 2.125e-61 222.0 COG1595@1|root,COG1595@2|Bacteria,1TSCX@1239|Firmicutes,24CVD@186801|Clostridia,264W3@186807|Peptococcaceae 186801|Clostridia K TIGRFAM RNA polymerase sigma factor, sigma-70 family - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_7206397_5 279714.FuraDRAFT_1495 1.84e-129 425.0 COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,2VKYW@28216|Betaproteobacteria 28216|Betaproteobacteria P fad dependent oxidoreductase - - - ko:K07222 - - - - ko00000 - - - Pyr_redox_3 DYD3_k127_7206397_14 869210.Marky_1921 2.217e-10 64.0 COG0517@1|root,COG5485@1|root,COG0517@2|Bacteria,COG5485@2|Bacteria,1WK3F@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS DYD3_k127_7206397_6 616991.JPOO01000001_gene3360 1.311e-102 342.0 COG2207@1|root,COG2207@2|Bacteria,4PI6R@976|Bacteroidetes,1IG3A@117743|Flavobacteriia,23IGX@178469|Arenibacter 976|Bacteroidetes K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 DYD3_k127_7206397_2 700598.Niako_4652 3.135e-156 496.0 COG0412@1|root,COG0412@2|Bacteria,4NEUX@976|Bacteroidetes,1IRK8@117747|Sphingobacteriia 976|Bacteroidetes Q Dienelactone hydrolase family - - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH DYD3_k127_7206397_0 700598.Niako_4653 1.409e-202 636.0 COG0506@1|root,COG0506@2|Bacteria,4NEH5@976|Bacteroidetes,1IQ4H@117747|Sphingobacteriia 976|Bacteroidetes E Proline dehydrogenase putA - - ko:K00318 ko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130 - R10507 RC00083 ko00000,ko00001,ko01000 - - - Pro_dh DYD3_k127_7206397_1 700598.Niako_4654 1.085e-199 626.0 COG4948@1|root,COG4948@2|Bacteria,4NEBX@976|Bacteroidetes,1IP4Y@117747|Sphingobacteriia 976|Bacteroidetes M Mandelate racemase muconate lactonizing enzyme - GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20 ko:K19802 - - R10938 RC03309 ko00000,ko01000 - - - MR_MLE_C,MR_MLE_N DYD3_k127_7206397_8 700598.Niako_4655 5.243e-88 293.0 COG1607@1|root,COG1607@2|Bacteria,4NERA@976|Bacteroidetes,1IS80@117747|Sphingobacteriia 976|Bacteroidetes I PFAM thioesterase superfamily - - - - - - - - - - - - 4HBT DYD3_k127_7206397_11 1237149.C900_00849 4.892e-42 162.0 COG2003@1|root,COG2003@2|Bacteria,4NP8R@976|Bacteroidetes,47V9Q@768503|Cytophagia 976|Bacteroidetes L RadC-like JAB domain - - - - - - - - - - - - RadC DYD3_k127_7206397_4 118005.AWNK01000008_gene514 4.692e-133 429.0 COG5380@1|root,COG5380@2|Bacteria 2|Bacteria O lipid catabolic process - - - - - - - - - - - - Bro-N DYD3_k127_7206397_3 700598.Niako_4656 9.606e-135 432.0 COG0204@1|root,COG0204@2|Bacteria,4NG70@976|Bacteroidetes 976|Bacteroidetes I Acyl-transferase - - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase DYD3_k127_7206397_9 700598.Niako_4657 2.427e-73 254.0 COG2968@1|root,COG2968@2|Bacteria,4NVTG@976|Bacteroidetes,1J0FQ@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF541) - - - ko:K09807 - - - - ko00000 - - - SIMPL DYD3_k127_7206397_7 700598.Niako_4658 9.219e-91 304.0 COG0637@1|root,COG0637@2|Bacteria,4NID6@976|Bacteroidetes 976|Bacteroidetes S TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - 3.1.3.23 ko:K19270 - - - - ko00000,ko01000 - - - HAD_2 DYD3_k127_7206397_13 926549.KI421517_gene1465 9.095e-27 117.0 COG2353@1|root,COG2353@2|Bacteria,4PNPU@976|Bacteroidetes,47YDS@768503|Cytophagia 976|Bacteroidetes S YceI-like domain - - - - - - - - - - - - - DYD3_k127_7207392_2 1348583.ATLH01000029_gene1624 2.142e-43 163.0 COG0738@1|root,COG0738@2|Bacteria,4NFTC@976|Bacteroidetes,1HYBZ@117743|Flavobacteriia,1F8M3@104264|Cellulophaga 976|Bacteroidetes G Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 DYD3_k127_7207392_1 700598.Niako_6255 3.168e-157 499.0 COG3622@1|root,COG3622@2|Bacteria,4NG0V@976|Bacteroidetes,1INUU@117747|Sphingobacteriia 976|Bacteroidetes G Hydroxypyruvate isomerase - - 5.3.1.22 ko:K01816 ko00630,ko01100,map00630,map01100 - R01394 RC00511 ko00000,ko00001,ko01000 - - - AP_endonuc_2 DYD3_k127_7207392_0 700598.Niako_6254 9.611e-228 708.0 COG2303@1|root,COG2303@2|Bacteria,4NEF2@976|Bacteroidetes,1IPA2@117747|Sphingobacteriia 976|Bacteroidetes E Oxidoreductase - - - - - - - - - - - - FAD_binding_2,GMC_oxred_C,GMC_oxred_N,NAD_binding_8 DYD3_k127_7209772_0 700598.Niako_0884 1.282e-85 286.0 COG1119@1|root,COG1119@2|Bacteria,4NEWY@976|Bacteroidetes,1INTA@117747|Sphingobacteriia 976|Bacteroidetes P ABC-type molybdenum transport system ATPase component photorepair protein PhrA modF - - ko:K05776 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 - - - ABC_tran DYD3_k127_7209772_3 1443665.JACA01000001_gene3033 7.288e-23 105.0 COG0739@1|root,COG0739@2|Bacteria 2|Bacteria M heme binding - - - - - - - - - - - - Peptidase_M23,SH3_3 DYD3_k127_7209772_2 700598.Niako_0882 7.241e-36 138.0 2EINM@1|root,33CE0@2|Bacteria,4NZKA@976|Bacteroidetes,1IUJW@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_7209772_1 641524.ADICYQ_0745 9.671e-62 222.0 COG3386@1|root,COG3386@2|Bacteria,4NIMX@976|Bacteroidetes,47KMQ@768503|Cytophagia 976|Bacteroidetes G PFAM SMP-30 Gluconolaconase - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL DYD3_k127_7210922_4 1408433.JHXV01000008_gene164 8.111e-08 53.0 2CHCP@1|root,32S5R@2|Bacteria,4NS9G@976|Bacteroidetes,1I4BI@117743|Flavobacteriia,2PBSI@246874|Cryomorphaceae 976|Bacteroidetes S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 DYD3_k127_7210922_1 391596.PBAL39_02462 1.782e-108 357.0 COG2126@1|root,COG2126@2|Bacteria,4NEX1@976|Bacteroidetes,1IR8M@117747|Sphingobacteriia 976|Bacteroidetes J Ion transport protein - - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Ion_trans DYD3_k127_7210922_0 509635.N824_21955 1.968e-119 391.0 COG0558@1|root,COG3000@1|root,COG0558@2|Bacteria,COG3000@2|Bacteria,4NGQA@976|Bacteroidetes,1IW9M@117747|Sphingobacteriia 976|Bacteroidetes I Fatty acid hydroxylase superfamily - - - - - - - - - - - - FA_hydroxylase DYD3_k127_7210922_2 1408813.AYMG01000011_gene756 1.816e-59 211.0 COG1597@1|root,COG1597@2|Bacteria,4NJ68@976|Bacteroidetes,1IS4M@117747|Sphingobacteriia 976|Bacteroidetes I PFAM Diacylglycerol kinase, catalytic - - - - - - - - - - - - DAGK_acc,DAGK_cat DYD3_k127_7212022_0 700598.Niako_5661 2.236e-193 618.0 2DBC9@1|root,2Z8CA@2|Bacteria,4NJS4@976|Bacteroidetes,1IPPV@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function (DUF4173) - - - - - - - - - - - - DUF4173 DYD3_k127_7212022_1 290397.Adeh_1047 0.000539 43.0 COG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria,42QEI@68525|delta/epsilon subdivisions,2WM5N@28221|Deltaproteobacteria 28221|Deltaproteobacteria KLT Serine Threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase DYD3_k127_7215943_2 1123248.KB893315_gene3207 4.534e-42 159.0 COG3292@1|root,COG5002@1|root,COG3292@2|Bacteria,COG5002@2|Bacteria,4NK8Q@976|Bacteroidetes,1J0T9@117747|Sphingobacteriia 976|Bacteroidetes T Y_Y_Y domain - - - - - - - - - - - - HATPase_c,HisKA,Reg_prop,Y_Y_Y DYD3_k127_7215943_1 509635.N824_19555 2.119e-100 332.0 COG0642@1|root,COG0745@1|root,COG3292@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NDXU@976|Bacteroidetes,1IQU5@117747|Sphingobacteriia 976|Bacteroidetes T Two-component system sensor histidine kinase response regulator hybrid - - - - - - - - - - - - HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y DYD3_k127_7215943_0 1237149.C900_00840 4.15e-152 507.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_7219714_0 1121481.AUAS01000027_gene2809 5.129e-248 782.0 COG5492@1|root,COG5492@2|Bacteria,4NHMV@976|Bacteroidetes,47M4F@768503|Cytophagia 976|Bacteroidetes N Polysaccharide lyase family 8, super-sandwich domain - - 4.2.2.5 ko:K19049 - - - - ko00000,ko01000 - PL8 - Lyase_8,Lyase_8_C,Lyase_8_N DYD3_k127_7219714_1 929713.NIASO_06940 4.235e-204 644.0 COG3386@1|root,COG3386@2|Bacteria,4NH7B@976|Bacteroidetes,1IP9W@117747|Sphingobacteriia 976|Bacteroidetes G BNR repeat-containing family member - - - - - - - - - - - - BNR_4 DYD3_k127_7219714_2 1185876.BN8_02272 1.129e-50 184.0 COG4225@1|root,COG4225@2|Bacteria,4NF1N@976|Bacteroidetes,47K76@768503|Cytophagia 976|Bacteroidetes S Heparinase II/III-like protein - - - - - - - - - - - - DUF4962,Hepar_II_III DYD3_k127_721987_2 700598.Niako_4529 2.376e-26 108.0 COG1830@1|root,COG1830@2|Bacteria,4NEUM@976|Bacteroidetes,1IPKA@117747|Sphingobacteriia 976|Bacteroidetes G Aldolase fbaB - 4.1.2.13 ko:K11645 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - DeoC DYD3_k127_721987_1 1123248.KB893370_gene5084 2.448e-185 587.0 COG0508@1|root,COG0508@2|Bacteria,4NF33@976|Bacteroidetes,1IP4Q@117747|Sphingobacteriia 976|Bacteroidetes C The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) sucB - 2.3.1.61 ko:K00658 ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R02570,R02571,R08549 RC00004,RC02727,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding DYD3_k127_721987_3 1121931.AUHG01000004_gene922 2.608e-24 109.0 COG3779@1|root,COG3779@2|Bacteria,4NSS5@976|Bacteroidetes,1I437@117743|Flavobacteriia 976|Bacteroidetes S Uncharacterized protein conserved in bacteria (DUF2314) - - - - - - - - - - - - DUF2314 DYD3_k127_721987_0 700598.Niako_5041 2.113e-252 782.0 COG0567@1|root,COG0567@2|Bacteria,4NEU9@976|Bacteroidetes,1IQYB@117747|Sphingobacteriia 976|Bacteroidetes C 2-oxoglutarate dehydrogenase, E1 sucA - 1.2.4.2 ko:K00164 ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R00621,R01933,R01940,R03316,R08549 RC00004,RC00027,RC00627,RC02743,RC02833,RC02883 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr DYD3_k127_7225002_1 700598.Niako_2011 1.008e-205 656.0 COG1305@1|root,COG1305@2|Bacteria,4NIT7@976|Bacteroidetes,1IRSI@117747|Sphingobacteriia 976|Bacteroidetes E Domain of Unknown Function with PDB structure (DUF3857) - - - - - - - - - - - - DUF3857,Transglut_core DYD3_k127_7225002_0 700598.Niako_2012 4.761e-225 708.0 COG1305@1|root,COG1305@2|Bacteria,4NEKT@976|Bacteroidetes,1IRPU@117747|Sphingobacteriia 976|Bacteroidetes E SPTR Transglutaminase domain protein - - - - - - - - - - - - DUF3857 DYD3_k127_7226192_1 700598.Niako_7188 3.635e-99 328.0 COG1680@1|root,COG1680@2|Bacteria,4NGZR@976|Bacteroidetes,1IVYP@117747|Sphingobacteriia 976|Bacteroidetes V Beta-lactamase - - - - - - - - - - - - Beta-lactamase DYD3_k127_7226192_0 1123248.KB893324_gene1706 0.0 1293.0 COG1413@1|root,COG2010@1|root,COG2133@1|root,COG1413@2|Bacteria,COG2010@2|Bacteria,COG2133@2|Bacteria,4NH6B@976|Bacteroidetes,1IV9R@117747|Sphingobacteriia 976|Bacteroidetes C E-Z type HEAT repeats - - - - - - - - - - - - Cytochrom_C,GSDH,HEAT_2 DYD3_k127_7226904_4 700598.Niako_4359 2.784e-49 177.0 2C8XG@1|root,2Z7PK@2|Bacteria,4NEU8@976|Bacteroidetes,1IQC4@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF4197) - - - - - - - - - - - - DUF4197 DYD3_k127_7226904_0 700598.Niako_4358 1.651e-177 564.0 COG0477@1|root,COG2814@2|Bacteria,4NEUU@976|Bacteroidetes,1INWC@117747|Sphingobacteriia 976|Bacteroidetes EGP PFAM Major Facilitator Superfamily - - - - - - - - - - - - MFS_1,MFS_3 DYD3_k127_7226904_1 700598.Niako_4357 6.406e-149 476.0 COG1092@1|root,COG1092@2|Bacteria,4P1C0@976|Bacteroidetes,1IVC8@117747|Sphingobacteriia 976|Bacteroidetes J S-adenosylmethionine-dependent methyltransferase - - 2.1.1.191 ko:K06969 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_SAM DYD3_k127_7226904_3 1267211.KI669560_gene787 3.735e-59 214.0 COG2931@1|root,COG2931@2|Bacteria,4NQP2@976|Bacteroidetes,1IYK4@117747|Sphingobacteriia 976|Bacteroidetes Q A domain in the BMP inhibitor chordin and in microbial proteins. - - - - - - - - - - - - CHRD DYD3_k127_7226904_2 700598.Niako_4356 2.911e-82 274.0 COG2234@1|root,COG2234@2|Bacteria,4NFDJ@976|Bacteroidetes,1IQ2M@117747|Sphingobacteriia 976|Bacteroidetes S peptidase - - - - - - - - - - - - PA,Peptidase_M28 DYD3_k127_7227790_1 700598.Niako_4955 1.058e-21 95.0 COG0162@1|root,COG0162@2|Bacteria,4NF19@976|Bacteroidetes,1IPGT@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) tyrS GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 ko:K01866 ko00970,map00970 M00359,M00360 R02918 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - S4,tRNA-synt_1b DYD3_k127_7227790_0 700598.Niako_4956 1.018e-194 619.0 COG0520@1|root,COG0520@2|Bacteria,4NF4G@976|Bacteroidetes,1IR6S@117747|Sphingobacteriia 976|Bacteroidetes E Aminotransferase class-V - - - - - - - - - - - - Aminotran_5 DYD3_k127_729741_1 700598.Niako_4070 2.728e-173 554.0 COG0841@1|root,COG0841@2|Bacteria 2|Bacteria V transmembrane transporter activity - - - - - - - - - - - - ACR_tran DYD3_k127_729741_4 700598.Niako_4069 1.998e-88 304.0 COG0845@1|root,COG0845@2|Bacteria,4NZYI@976|Bacteroidetes 976|Bacteroidetes M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - HlyD_D23 DYD3_k127_729741_3 1123248.KB893326_gene1542 1.475e-135 435.0 COG3970@1|root,COG3970@2|Bacteria,4NGTH@976|Bacteroidetes,1IQ0W@117747|Sphingobacteriia 976|Bacteroidetes S COGs COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - 4.2.1.141 ko:K14259 ko00040,map00040 - R09186 RC00429 ko00000,ko00001,ko01000 - - - FAA_hydrolase DYD3_k127_729741_0 1123248.KB893326_gene1541 0.0 1027.0 COG0129@1|root,COG0129@2|Bacteria,4NEKY@976|Bacteroidetes,1IQEN@117747|Sphingobacteriia 976|Bacteroidetes EG Belongs to the IlvD Edd family - - - - - - - - - - - - ILVD_EDD DYD3_k127_729741_2 760192.Halhy_0722 1.444e-169 544.0 COG4198@1|root,COG4198@2|Bacteria,4NEAX@976|Bacteroidetes,1IREX@117747|Sphingobacteriia 976|Bacteroidetes S Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_733912_3 926562.Oweho_2547 1.445e-06 51.0 COG0265@1|root,COG2234@1|root,COG0265@2|Bacteria,COG2234@2|Bacteria,4NFZR@976|Bacteroidetes,1HXXH@117743|Flavobacteriia,2PBDE@246874|Cryomorphaceae 976|Bacteroidetes O Peptidase family M28 - - - - - - - - - - - - PD40,PDZ_2,Peptidase_M28 DYD3_k127_733912_0 1305737.JAFX01000001_gene2871 1.65e-99 336.0 COG0265@1|root,COG2234@1|root,COG0265@2|Bacteria,COG2234@2|Bacteria,4NFZR@976|Bacteroidetes,47N0I@768503|Cytophagia 976|Bacteroidetes M PFAM peptidase M28 - - - - - - - - - - - - PD40,PDZ_2,Peptidase_M28 DYD3_k127_733912_2 700598.Niako_6161 3.703e-09 63.0 COG1396@1|root,COG2932@1|root,COG1396@2|Bacteria,COG2932@2|Bacteria,4NDUW@976|Bacteroidetes,1IQ7T@117747|Sphingobacteriia 976|Bacteroidetes K transcriptional regulator - - - - - - - - - - - - HTH_3,Peptidase_S24 DYD3_k127_733912_4 1313421.JHBV01000144_gene1166 5.458e-06 52.0 COG3422@1|root,COG3422@2|Bacteria 2|Bacteria S double-strand break repair trpS - 6.1.1.2 ko:K01867,ko:K09946 ko00970,map00970 M00359,M00360 R03664 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DUF1508,tRNA-synt_1b DYD3_k127_735326_4 700598.Niako_4541 1.29e-09 59.0 COG4585@1|root,COG4585@2|Bacteria,4NS8E@976|Bacteroidetes 976|Bacteroidetes T Histidine kinase - - 2.7.13.3 ko:K07778 ko02020,map02020 M00479 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA_3 DYD3_k127_735326_3 1401065.HMPREF2130_05925 1.331e-30 125.0 COG2363@1|root,COG2363@2|Bacteria,1MZX3@1224|Proteobacteria,2VU8X@28216|Betaproteobacteria,3T4T4@506|Alcaligenaceae 28216|Betaproteobacteria S Protein of unknown function (DUF423) ygdD - - - - - - - - - - - DUF423 DYD3_k127_735326_1 700598.Niako_4543 1.356e-84 282.0 COG0703@1|root,COG0703@2|Bacteria,4NQ73@976|Bacteroidetes,1ITC4@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate aroK GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 ko:K00891 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - SKI DYD3_k127_735326_0 700598.Niako_4544 2.18e-239 742.0 COG1960@1|root,COG1960@2|Bacteria,4NEKJ@976|Bacteroidetes,1INZ7@117747|Sphingobacteriia 976|Bacteroidetes I acyl-CoA dehydrogenase gcdH - 1.3.8.6 ko:K00252 ko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130 M00032 R02487,R02488,R10074 RC00052,RC00156 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N DYD3_k127_735326_2 700598.Niako_4545 8.398e-83 278.0 COG1595@1|root,COG1595@2|Bacteria,4NMAK@976|Bacteroidetes,1ISGD@117747|Sphingobacteriia 976|Bacteroidetes K PFAM RNA polymerase sigma factor 70, region 4 type 2 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 DYD3_k127_739227_0 700598.Niako_5685 0.0 1408.0 COG0209@1|root,COG0209@2|Bacteria,4NEHQ@976|Bacteroidetes,1IRF8@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen - - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Intein_splicing,LAGLIDADG_3,Ribonuc_red_2_N,Ribonuc_red_lgC DYD3_k127_739227_1 1550091.JROE01000004_gene1651 1.993e-63 226.0 COG2067@1|root,COG2067@2|Bacteria,4NGWZ@976|Bacteroidetes,1IY2K@117747|Sphingobacteriia 976|Bacteroidetes I Protein of unknown function (DUF2490) - - - - - - - - - - - - DUF2490 DYD3_k127_741291_2 331678.Cphamn1_1380 9.243e-05 46.0 COG0457@1|root,COG0457@2|Bacteria 331678.Cphamn1_1380|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - DYD3_k127_741291_0 1305737.JAFX01000001_gene1136 5.702e-135 440.0 COG3621@1|root,COG3621@2|Bacteria 2|Bacteria AT Patatin-like phospholipase - - - - - - - - - - - - Patatin DYD3_k127_741291_1 700598.Niako_6380 5.726e-47 170.0 2DMPT@1|root,32SXV@2|Bacteria,4PKGT@976|Bacteroidetes 976|Bacteroidetes S Domain of unknown function (DUF3127) - - - - - - - - - - - - DUF3127 DYD3_k127_743916_0 929703.KE386491_gene1729 1.652e-236 750.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_743916_1 1166018.FAES_0215 1.77e-70 252.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,47JJN@768503|Cytophagia 976|Bacteroidetes V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_75619_1 700598.Niako_0946 2.088e-74 252.0 COG1428@1|root,COG1428@2|Bacteria,4PM5R@976|Bacteroidetes,1IXF2@117747|Sphingobacteriia 976|Bacteroidetes F Thymidylate kinase - - - - - - - - - - - - dNK DYD3_k127_75619_0 700598.Niako_0945 5.085e-182 577.0 COG0477@1|root,COG2814@2|Bacteria,4NFRE@976|Bacteroidetes,1IQHN@117747|Sphingobacteriia 976|Bacteroidetes EGP PFAM Major Facilitator Superfamily - - - - - - - - - - - - MFS_1,MFS_3 DYD3_k127_75619_3 172045.KS04_04485 1.192e-09 67.0 COG3637@1|root,COG3637@2|Bacteria,4NR9K@976|Bacteroidetes,1I34P@117743|Flavobacteriia,34PVP@308865|Elizabethkingia 976|Bacteroidetes M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl,OMP_b-brl_2 DYD3_k127_75619_2 1094466.KQS_13265 5.258e-28 118.0 COG3209@1|root,COG5295@1|root,COG3209@2|Bacteria,COG5295@2|Bacteria,4NJTK@976|Bacteroidetes,1HZNB@117743|Flavobacteriia,2NX0A@237|Flavobacterium 976|Bacteroidetes UW COG3209 Rhs family protein - - - - - - - - - - - - Peptidase_S74 DYD3_k127_757683_0 929713.NIASO_08320 1.695e-190 613.0 COG4206@1|root,COG4206@2|Bacteria,4NHH8@976|Bacteroidetes,1IQJR@117747|Sphingobacteriia 976|Bacteroidetes H Outer membrane cobalamin receptor protein btuB - - ko:K16092 - - - - ko00000,ko02000 1.B.14.3 - - Plug,TonB_dep_Rec DYD3_k127_757683_3 700598.Niako_6841 5.285e-47 175.0 2CBKC@1|root,30JJC@2|Bacteria,4NPUJ@976|Bacteroidetes,1IY4I@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_757683_1 700598.Niako_6840 3.334e-157 500.0 COG0614@1|root,COG0614@2|Bacteria,4NGC6@976|Bacteroidetes,1ITPX@117747|Sphingobacteriia 976|Bacteroidetes P Periplasmic binding protein - - - ko:K02016 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko02000 3.A.1.14 - - Peripla_BP_2 DYD3_k127_757683_4 945713.IALB_2303 7.857e-20 92.0 2DS1S@1|root,33E5G@2|Bacteria 2|Bacteria S Cysteine-rich CWC - - - - - - - - - - - - Cys_rich_CWC DYD3_k127_757683_2 700598.Niako_6838 3.428e-67 233.0 COG2087@1|root,COG2087@2|Bacteria,4NMKE@976|Bacteroidetes,1IXSR@117747|Sphingobacteriia 976|Bacteroidetes H Cobinamide kinase / cobinamide phosphate guanyltransferase cobU - 2.7.1.156,2.7.7.62 ko:K02231 ko00860,ko01100,map00860,map01100 M00122 R05221,R05222,R06558 RC00002,RC00428 ko00000,ko00001,ko00002,ko01000 - - - CobU DYD3_k127_757683_5 700598.Niako_6837 3.015e-09 58.0 COG2102@1|root,COG2102@2|Bacteria,4NFQ4@976|Bacteroidetes,1ISHV@117747|Sphingobacteriia 976|Bacteroidetes S Diphthamide synthase - - - - - - - - - - - - Diphthami_syn_2 DYD3_k127_763713_0 1122605.KB893648_gene3676 0.0 1137.0 COG1554@1|root,COG1554@2|Bacteria,4NEWW@976|Bacteroidetes,1INRU@117747|Sphingobacteriia 976|Bacteroidetes G Glycosyl hydrolase family 65, N-terminal domain - - 3.2.1.51 ko:K15923 ko00511,map00511 - - - ko00000,ko00001,ko01000 - GH95 - Glyco_hyd_65N_2 DYD3_k127_763713_2 485917.Phep_0448 5.55e-120 395.0 2EK4B@1|root,33DUR@2|Bacteria,4NYV7@976|Bacteroidetes,1IXEN@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_763713_3 485917.Phep_0447 9.023e-62 220.0 2DS00@1|root,33DW5@2|Bacteria,4NXU0@976|Bacteroidetes,1IYAG@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - Fasciclin DYD3_k127_763713_1 485917.Phep_0446 3.554e-164 526.0 COG0446@1|root,COG0446@2|Bacteria,4PN4M@976|Bacteroidetes 976|Bacteroidetes S Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_765638_2 700598.Niako_5549 1.088e-242 755.0 COG0044@1|root,COG0044@2|Bacteria,4NE3T@976|Bacteroidetes,1IQSD@117747|Sphingobacteriia 976|Bacteroidetes F Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides pyrC - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 DYD3_k127_765638_1 700598.Niako_5548 2.07e-281 872.0 2DBCF@1|root,2Z8DB@2|Bacteria,4NG6B@976|Bacteroidetes,1IQA3@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - Caps_assemb_Wzi DYD3_k127_765638_4 1150600.ADIARSV_2280 4.321e-104 347.0 COG0451@1|root,COG0451@2|Bacteria,4NG8Y@976|Bacteroidetes,1IQHM@117747|Sphingobacteriia 976|Bacteroidetes GM NAD(P)H-binding - - - - - - - - - - - - Epimerase,NAD_binding_10 DYD3_k127_765638_0 700598.Niako_5517 0.0 1680.0 COG0841@1|root,COG0841@2|Bacteria,4NDZG@976|Bacteroidetes,1IPQ1@117747|Sphingobacteriia 976|Bacteroidetes V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran DYD3_k127_765638_3 700598.Niako_5518 8.483e-149 479.0 COG0845@1|root,COG0845@2|Bacteria,4NF23@976|Bacteroidetes,1IS62@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - HlyD_D23 DYD3_k127_765638_5 700598.Niako_5519 7.439e-62 215.0 COG1538@1|root,COG1538@2|Bacteria,4NE4S@976|Bacteroidetes,1IQ6M@117747|Sphingobacteriia 976|Bacteroidetes MU outer membrane efflux protein - - - - - - - - - - - - OEP DYD3_k127_765813_1 700598.Niako_2014 1.633e-116 383.0 COG3735@1|root,COG3735@2|Bacteria,4NN4U@976|Bacteroidetes,1ITG6@117747|Sphingobacteriia 976|Bacteroidetes S TraB family - - - ko:K09973 - - - - ko00000 - - - TraB DYD3_k127_765813_0 700598.Niako_2013 5.792e-212 676.0 COG1305@1|root,COG1305@2|Bacteria,4NEKT@976|Bacteroidetes,1IRPU@117747|Sphingobacteriia 976|Bacteroidetes E SPTR Transglutaminase domain protein - - - - - - - - - - - - DUF3857 DYD3_k127_765813_2 700598.Niako_2012 7.617e-37 141.0 COG1305@1|root,COG1305@2|Bacteria,4NEKT@976|Bacteroidetes,1IRPU@117747|Sphingobacteriia 976|Bacteroidetes E SPTR Transglutaminase domain protein - - - - - - - - - - - - DUF3857 DYD3_k127_766134_0 1123248.KB893317_gene4278 0.0 1062.0 COG0341@1|root,COG0342@1|root,COG0341@2|Bacteria,COG0342@2|Bacteria,4NE1X@976|Bacteroidetes,1IP7W@117747|Sphingobacteriia 976|Bacteroidetes U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD - - ko:K03072,ko:K12257 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG DYD3_k127_766134_6 411479.BACUNI_04003 3.1e-14 84.0 COG0341@1|root,COG0342@1|root,COG0341@2|Bacteria,COG0342@2|Bacteria,4NE1X@976|Bacteroidetes,2FMPX@200643|Bacteroidia,4AMC3@815|Bacteroidaceae 976|Bacteroidetes U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD - - ko:K03072,ko:K12257 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG DYD3_k127_766134_1 700598.Niako_1001 6.31e-219 683.0 COG0436@1|root,COG0436@2|Bacteria,4NENS@976|Bacteroidetes,1INY0@117747|Sphingobacteriia 976|Bacteroidetes E PFAM Aminotransferase class I and II aspC - 2.6.1.1 ko:K00812 ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00355,R00694,R00734,R00896,R02433,R02619,R05052 RC00006 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_766134_3 700598.Niako_2740 1.964e-81 276.0 COG2949@1|root,COG2949@2|Bacteria,4NNQS@976|Bacteroidetes,1IXSZ@117747|Sphingobacteriia 976|Bacteroidetes S DUF218 domain sanA - - ko:K03748 - - - - ko00000 - - - DUF218 DYD3_k127_766134_4 643867.Ftrac_1066 6.718e-45 165.0 COG0662@1|root,COG0662@2|Bacteria,4NS6V@976|Bacteroidetes,47QTI@768503|Cytophagia 976|Bacteroidetes G mannose-6-phosphate isomerase - - - - - - - - - - - - Cupin_2 DYD3_k127_766134_2 700598.Niako_1003 6.339e-126 411.0 COG0491@1|root,COG0491@2|Bacteria,4NPQV@976|Bacteroidetes,1J09X@117747|Sphingobacteriia 976|Bacteroidetes S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B DYD3_k127_766134_5 1121904.ARBP01000028_gene1710 2.938e-21 94.0 COG0673@1|root,COG0673@2|Bacteria,4NIF1@976|Bacteroidetes,47JIW@768503|Cytophagia 976|Bacteroidetes S Oxidoreductase family, C-terminal alpha beta domain - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_768930_0 700598.Niako_6669 3.096e-230 717.0 COG0156@1|root,COG0156@2|Bacteria,4NFBU@976|Bacteroidetes,1IP7S@117747|Sphingobacteriia 976|Bacteroidetes H Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA kbl - 2.3.1.29 ko:K00639 ko00260,map00260 - R00371 RC00004,RC00394 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 DYD3_k127_768930_1 700598.Niako_6672 1.328e-27 112.0 COG0251@1|root,COG0251@2|Bacteria,4NQ8M@976|Bacteroidetes,1ISZW@117747|Sphingobacteriia 976|Bacteroidetes J endoribonuclease L-PSP - - 3.5.99.10 ko:K09022 - - R11098,R11099 RC03275,RC03354 ko00000,ko01000 - - - Ribonuc_L-PSP DYD3_k127_770161_2 1185876.BN8_05865 1.251e-34 136.0 28HUE@1|root,2Z815@2|Bacteria,4NHK5@976|Bacteroidetes,47P9E@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - DoxX,DoxX_2 DYD3_k127_770161_1 700598.Niako_6798 3.371e-95 317.0 COG3279@1|root,COG3279@2|Bacteria,4NIJQ@976|Bacteroidetes,1IS76@117747|Sphingobacteriia 976|Bacteroidetes K SMART Signal transduction response regulator, receiver - - - - - - - - - - - - LytTR,Response_reg DYD3_k127_770161_0 700598.Niako_6797 9.61e-144 464.0 COG2972@1|root,COG2972@2|Bacteria,4NKZH@976|Bacteroidetes,1INUY@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Signal transduction histidine kinase, internal region - - - - - - - - - - - - His_kinase DYD3_k127_775010_0 1121481.AUAS01000017_gene2541 2.496e-239 764.0 COG0577@1|root,COG0577@2|Bacteria,4NJII@976|Bacteroidetes,47KJS@768503|Cytophagia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_775010_1 929713.NIASO_07485 1.679e-222 715.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1IPMY@117747|Sphingobacteriia 976|Bacteroidetes V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD DYD3_k127_775010_2 313603.FB2170_07849 1.028e-94 320.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1HX0V@117743|Flavobacteriia,2PGT9@252356|Maribacter 976|Bacteroidetes V MacB-like periplasmic core domain - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_779185_4 700598.Niako_6412 7.764e-46 167.0 COG2315@1|root,COG2315@2|Bacteria,4NS6J@976|Bacteroidetes,1IT89@117747|Sphingobacteriia 976|Bacteroidetes S YjbR - - - - - - - - - - - - YjbR DYD3_k127_779185_3 929713.NIASO_15415 1.164e-48 176.0 COG0251@1|root,COG0251@2|Bacteria,4NPT2@976|Bacteroidetes,1IYB6@117747|Sphingobacteriia 976|Bacteroidetes J Endoribonuclease L-PSP - - - - - - - - - - - - Aldo_ket_red,Ribonuc_L-PSP DYD3_k127_779185_1 700598.Niako_6411 1.493e-113 370.0 COG3298@1|root,COG3298@2|Bacteria,4NECH@976|Bacteroidetes,1IR1A@117747|Sphingobacteriia 976|Bacteroidetes L 3'-5' exonuclease related to the exonuclease domain of PolB - - - ko:K07501 - - - - ko00000 - - - DNA_pol_B_exo2 DYD3_k127_779185_0 700598.Niako_6410 2.831e-202 632.0 COG0836@1|root,COG0836@2|Bacteria,4NE1Y@976|Bacteroidetes,1INM4@117747|Sphingobacteriia 976|Bacteroidetes M mannose-1-phosphate guanylyltransferase manC - 2.7.7.13 ko:K00971 ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110 M00114,M00361,M00362 R00885 RC00002 ko00000,ko00001,ko00002,ko01000 - - - MannoseP_isomer,NTP_transferase DYD3_k127_779185_2 700598.Niako_6408 2.763e-54 192.0 COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,4NED8@976|Bacteroidetes,1INUR@117747|Sphingobacteriia 976|Bacteroidetes M Belongs to the SIS family. GutQ KpsF subfamily kdsD - 5.3.1.13 ko:K06041 ko00540,ko01100,map00540,map01100 M00063 R01530 RC00541 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CBS,SIS DYD3_k127_78551_3 391603.FBALC1_09677 1.319e-09 68.0 COG2706@1|root,COG4886@1|root,COG2706@2|Bacteria,COG4886@2|Bacteria,4NFXV@976|Bacteroidetes,1I00F@117743|Flavobacteriia 976|Bacteroidetes O Tetratricopeptide repeat - - - - - - - - - - - - VCBS DYD3_k127_78551_2 313606.M23134_01525 1.293e-21 104.0 COG4733@1|root,COG4733@2|Bacteria 2|Bacteria S cellulase activity - - - ko:K20276 ko02024,map02024 - - - ko00000,ko00001 - - - Big_3_3,Cadherin-like,Cohesin,Glyco_hydro_10,SLH DYD3_k127_78551_0 700598.Niako_6463 1.954e-215 679.0 COG1680@1|root,COG1680@2|Bacteria,4NFUI@976|Bacteroidetes,1INWP@117747|Sphingobacteriia 976|Bacteroidetes V COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - - - - - - - - - - Beta-lactamase,Beta-lactamase2,DUF3471 DYD3_k127_78551_1 700598.Niako_5706 7.172e-73 246.0 COG0233@1|root,COG0233@2|Bacteria,4NF95@976|Bacteroidetes,1IRU0@117747|Sphingobacteriia 976|Bacteroidetes J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another frr GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - ko:K02838 - - - - ko00000,ko03012 - - - RRF DYD3_k127_795920_0 700598.Niako_0135 0.0 1142.0 COG2373@1|root,COG2373@2|Bacteria,4NED2@976|Bacteroidetes,1IQPG@117747|Sphingobacteriia 976|Bacteroidetes S COG2373 Large extracellular alpha-helical protein - - - - - - - - - - - - A2M,A2M_N,A2M_N_2,CarbopepD_reg_2,Plug DYD3_k127_795920_1 700598.Niako_0255 1.819e-164 526.0 COG2885@1|root,COG2885@2|Bacteria,4NEND@976|Bacteroidetes,1IWSD@117747|Sphingobacteriia 976|Bacteroidetes M COG2885 Outer membrane protein and related peptidoglycan-associated - - - - - - - - - - - - OmpA,PD40 DYD3_k127_801967_0 700598.Niako_2993 1.919e-104 343.0 COG2360@1|root,COG2360@2|Bacteria,4NG3A@976|Bacteroidetes,1IP1V@117747|Sphingobacteriia 976|Bacteroidetes O Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine aat - 2.3.2.6 ko:K00684 - - R03813,R11443,R11444 RC00055,RC00064 ko00000,ko01000 - - - Leu_Phe_trans DYD3_k127_801967_3 700598.Niako_2606 1.181e-12 74.0 2B5GI@1|root,31YB8@2|Bacteria,4NQTH@976|Bacteroidetes 976|Bacteroidetes S Family of unknown function (DUF5469) - - - - - - - - - - - - DUF5469 DYD3_k127_801967_1 700598.Niako_2607 4.37e-60 215.0 COG3522@1|root,COG3522@2|Bacteria,4NGBP@976|Bacteroidetes,1INRX@117747|Sphingobacteriia 976|Bacteroidetes S type VI secretion protein - - - - - - - - - - - - T6SS_VasE DYD3_k127_801967_4 761193.Runsl_5212 7.522e-07 57.0 28SFY@1|root,2ZESG@2|Bacteria,4P950@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_801967_2 929556.Solca_0076 1.161e-43 162.0 COG0251@1|root,COG0251@2|Bacteria,4NSCT@976|Bacteroidetes,1IU0X@117747|Sphingobacteriia 976|Bacteroidetes J endoribonuclease L-PSP - - - - - - - - - - - - Ribonuc_L-PSP DYD3_k127_804116_0 925409.KI911562_gene55 1.919e-248 784.0 COG1629@1|root,COG1629@2|Bacteria,4P4MW@976|Bacteroidetes,1IRE6@117747|Sphingobacteriia 976|Bacteroidetes P Outer membrane protein beta-barrel family - - - - - - - - - - - - CarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3,Plug DYD3_k127_804116_1 1229487.AMYW01000026_gene2728 1.676e-65 230.0 COG2972@1|root,COG2972@2|Bacteria,4NI09@976|Bacteroidetes,1I10Z@117743|Flavobacteriia,2NU10@237|Flavobacterium 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - His_kinase DYD3_k127_816557_1 1123248.KB893325_gene1168 5.264e-19 89.0 COG2010@1|root,COG2010@2|Bacteria,4NMGT@976|Bacteroidetes,1J0CK@117747|Sphingobacteriia 976|Bacteroidetes C Cytochrome c - - - - - - - - - - - - Cytochrom_C DYD3_k127_816557_0 1123248.KB893326_gene1315 1.302e-244 764.0 COG1629@1|root,COG4771@2|Bacteria,4NFJJ@976|Bacteroidetes,1IQQU@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_820300_4 189753.AXAS01000001_gene3764 5.086e-18 87.0 COG1231@1|root,COG1231@2|Bacteria,1RA9M@1224|Proteobacteria,2TTDV@28211|Alphaproteobacteria,3JU0R@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria E HI0933-like protein - - 1.4.3.4 ko:K00274 ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034 M00135 R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354 RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713 ko00000,ko00001,ko00002,ko01000 - - - Amino_oxidase,NAD_binding_8 DYD3_k127_820300_2 1041159.AZUW01000023_gene3071 6.487e-22 97.0 29AKN@1|root,2ZXKK@2|Bacteria,1R3EH@1224|Proteobacteria,2U01P@28211|Alphaproteobacteria,4BFUN@82115|Rhizobiaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - DYD3_k127_820300_0 700598.Niako_1414 9.442e-129 422.0 COG2008@1|root,COG2008@2|Bacteria,4NJVC@976|Bacteroidetes,1IR5Q@117747|Sphingobacteriia 976|Bacteroidetes E Beta-eliminating lyase - - 4.1.2.48 ko:K01620 ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230 - R00751,R06171 RC00312,RC00372 ko00000,ko00001,ko01000 - - - Beta_elim_lyase DYD3_k127_820300_3 700598.Niako_2352 2.144e-21 101.0 2F79S@1|root,33ZR0@2|Bacteria,4P445@976|Bacteroidetes,1IYA7@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_824142_0 700598.Niako_6030 1.029e-147 471.0 COG0264@1|root,COG0264@2|Bacteria,4NF03@976|Bacteroidetes,1IP5Z@117747|Sphingobacteriia 976|Bacteroidetes J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome tsf GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - ko:K02357 - - - - ko00000,ko03012,ko03029 - - - EF_TS DYD3_k127_824142_1 1279009.ADICEAN_01142 8.577e-71 252.0 COG1928@1|root,COG1928@2|Bacteria,4NPHN@976|Bacteroidetes,47TMF@768503|Cytophagia 976|Bacteroidetes O C-terminal four TMM region of protein-O-mannosyltransferase - - - - - - - - - - - - - DYD3_k127_826576_1 700598.Niako_7203 2.301e-84 284.0 2980N@1|root,2ZV6R@2|Bacteria,4NPY5@976|Bacteroidetes 976|Bacteroidetes M PPIC-type PPIASE domain - - - - - - - - - - - - Rotamase,Rotamase_3 DYD3_k127_826576_0 1122605.KB893649_gene3854 5.895e-162 519.0 COG2133@1|root,COG2133@2|Bacteria,4NEZC@976|Bacteroidetes,1INVX@117747|Sphingobacteriia 976|Bacteroidetes G Glucose Sorbosone dehydrogenase - - - ko:K21430 - - - - ko00000,ko01000 - - - GSDH DYD3_k127_826576_2 1122176.KB903569_gene3495 6.433e-07 61.0 COG2931@1|root,COG3291@1|root,COG3591@1|root,COG2931@2|Bacteria,COG3291@2|Bacteria,COG3591@2|Bacteria,4NG2K@976|Bacteroidetes,1IY1U@117747|Sphingobacteriia 976|Bacteroidetes E Belongs to the peptidase S1B family - - 3.4.21.50 ko:K01337 - - - - ko00000,ko01000,ko01002 - - - P_proprotein,Trypsin_2 DYD3_k127_828953_0 760192.Halhy_6431 2.389e-91 303.0 COG2110@1|root,COG2110@2|Bacteria,4NTFW@976|Bacteroidetes,1IVHI@117747|Sphingobacteriia 976|Bacteroidetes S Appr-1-p processing domain protein - - - - - - - - - - - - Macro DYD3_k127_828953_1 558152.IQ37_12015 2.021e-78 269.0 COG1028@1|root,COG1028@2|Bacteria,4NN6M@976|Bacteroidetes,1I2GK@117743|Flavobacteriia,3ZQ7Q@59732|Chryseobacterium 976|Bacteroidetes IQ Fungal family of unknown function (DUF1776) - - - - - - - - - - - - adh_short DYD3_k127_840046_0 700598.Niako_6291 5.876e-233 730.0 COG3087@1|root,COG3087@2|Bacteria,4PNV5@976|Bacteroidetes 976|Bacteroidetes D Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides - - - - - - - - - - - - - DYD3_k127_840046_1 700598.Niako_6289 1.394e-79 266.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,4NDVA@976|Bacteroidetes,1IPFU@117747|Sphingobacteriia 976|Bacteroidetes L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 DYD3_k127_851699_0 760192.Halhy_2333 1.181e-79 269.0 COG0477@1|root,COG2814@2|Bacteria,4NESW@976|Bacteroidetes,1IPF0@117747|Sphingobacteriia 976|Bacteroidetes EGP PFAM Major Facilitator Superfamily - - - ko:K08156 - - - - ko00000,ko02000 2.A.1.2.14 - - MFS_1,Sugar_tr DYD3_k127_851699_1 362418.IW19_01525 4.263e-32 139.0 2DEUU@1|root,2ZPC2@2|Bacteria,4P808@976|Bacteroidetes,1IB7J@117743|Flavobacteriia,2NZBR@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_851699_2 485918.Cpin_2464 2.314e-05 47.0 COG0577@1|root,COG0577@2|Bacteria,4NDUK@976|Bacteroidetes,1INSB@117747|Sphingobacteriia 976|Bacteroidetes V TIGRFAM Acidobacterial duplicated orphan permease - - - - - - - - - - - - FtsX,MacB_PCD DYD3_k127_855953_2 1123057.P872_07965 1.424e-244 776.0 COG1629@1|root,COG1629@2|Bacteria,4NDXS@976|Bacteroidetes,47MXX@768503|Cytophagia 976|Bacteroidetes P TonB dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,STN,TonB_dep_Rec DYD3_k127_855953_3 1267211.KI669560_gene38 1.335e-240 751.0 COG3637@1|root,COG3637@2|Bacteria,4PM31@976|Bacteroidetes,1J129@117747|Sphingobacteriia 976|Bacteroidetes M Pfam:SusD - - - ko:K21572 - - - - ko00000,ko02000 8.A.46.1,8.A.46.3 - - SusD-like_3,SusD_RagB DYD3_k127_855953_0 1267211.KI669560_gene39 0.0 1397.0 COG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,4P1Z5@976|Bacteroidetes,1INPM@117747|Sphingobacteriia 976|Bacteroidetes HP TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_855953_1 700598.Niako_5740 0.0 1028.0 COG1033@1|root,COG1033@2|Bacteria,4NE0M@976|Bacteroidetes,1IQCU@117747|Sphingobacteriia 976|Bacteroidetes S of the RND superfamily - - - ko:K07003 - - - - ko00000 - - - MMPL DYD3_k127_858074_2 700598.Niako_6592 1.335e-18 85.0 COG3637@1|root,COG3637@2|Bacteria,4NNPF@976|Bacteroidetes,1ISTC@117747|Sphingobacteriia 976|Bacteroidetes M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - OMP_b-brl DYD3_k127_858074_1 700598.Niako_6593 5.28e-139 444.0 COG0020@1|root,COG0020@2|Bacteria,4NF2B@976|Bacteroidetes,1IPRJ@117747|Sphingobacteriia 976|Bacteroidetes I Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids uppS GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 ko:K00806 ko00900,ko01110,map00900,map01110 - R06447 RC00279,RC02839 ko00000,ko00001,ko01000,ko01006 - - - Prenyltransf DYD3_k127_858074_0 700598.Niako_6594 9.929e-155 499.0 COG4775@1|root,COG4775@2|Bacteria,4NE6Z@976|Bacteroidetes,1IR22@117747|Sphingobacteriia 976|Bacteroidetes M Outer membrane protein assembly complex, YaeT protein yaeT - - ko:K07277 - - - - ko00000,ko02000,ko03029 1.B.33 - - Bac_surface_Ag,POTRA DYD3_k127_858407_4 1121288.AULL01000015_gene142 4.183e-22 97.0 COG4420@1|root,COG4420@2|Bacteria,4NH74@976|Bacteroidetes,1HYXZ@117743|Flavobacteriia,3ZSGD@59732|Chryseobacterium 976|Bacteroidetes S Protein of unknown function (DUF1003) - - - - - - - - - - - - DUF1003 DYD3_k127_858407_3 1280944.HY17_16170 6.114e-23 105.0 COG0716@1|root,COG0716@2|Bacteria 2|Bacteria C FMN binding - - - - - - - - - - - - Flavodoxin_5 DYD3_k127_858407_2 700598.Niako_1937 7.07e-32 131.0 2EDGF@1|root,337CN@2|Bacteria,4NXB6@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_858407_1 700598.Niako_1938 3.896e-175 554.0 COG0664@1|root,COG0745@1|root,COG0664@2|Bacteria,COG0745@2|Bacteria,4NFB1@976|Bacteroidetes,1INRY@117747|Sphingobacteriia 976|Bacteroidetes T COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - - - - - - - - - - HTH_Crp_2,Response_reg,cNMP_binding DYD3_k127_858407_0 700598.Niako_1939 6.327e-230 720.0 COG2217@1|root,COG2608@1|root,COG2217@2|Bacteria,COG2608@2|Bacteria,4NEI1@976|Bacteroidetes,1IPQU@117747|Sphingobacteriia 976|Bacteroidetes P ATPase, P-type (transporting), HAD superfamily, subfamily IC ccoI - 3.6.3.4,3.6.3.54 ko:K01533,ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - ATPase-cat_bd,E1-E2_ATPase,HMA,Hydrolase DYD3_k127_870735_2 700598.Niako_6331 1.036e-59 208.0 COG2059@1|root,COG2059@2|Bacteria,4NNZ1@976|Bacteroidetes,1INNP@117747|Sphingobacteriia 976|Bacteroidetes P TIGRFAM chromate transporter, chromate ion transporter (CHR) family - - - ko:K07240 - - - - ko00000,ko02000 2.A.51.1 - - Chromate_transp DYD3_k127_870735_1 1239962.C943_04282 3.528e-103 338.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,47PWE@768503|Cytophagia 976|Bacteroidetes KT Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_870735_0 1123248.KB893385_gene4734 4.55e-188 605.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria 2|Bacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y DYD3_k127_90208_0 700598.Niako_6648 4.554e-200 636.0 COG1409@1|root,COG4775@1|root,COG1409@2|Bacteria,COG4775@2|Bacteria,4NF9N@976|Bacteroidetes,1IPKR@117747|Sphingobacteriia 976|Bacteroidetes M metallophosphoesterase - - - - - - - - - - - - Bac_surface_Ag,Metallophos DYD3_k127_906854_0 700598.Niako_5592 5.542e-258 803.0 COG0072@1|root,COG0073@1|root,COG0072@2|Bacteria,COG0073@2|Bacteria,4NF5B@976|Bacteroidetes,1IPW0@117747|Sphingobacteriia 976|Bacteroidetes J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily pheT GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 ko:K01890 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - B3_4,B5,FDX-ACB,tRNA_bind DYD3_k127_906917_2 649349.Lbys_2993 8.925e-47 171.0 COG2197@1|root,COG2197@2|Bacteria,4NHTM@976|Bacteroidetes,47PWE@768503|Cytophagia 976|Bacteroidetes KT Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - - - - - - - - - - GerE,Response_reg DYD3_k127_906917_1 649349.Lbys_2994 1.413e-105 365.0 COG0457@1|root,COG4585@1|root,COG0457@2|Bacteria,COG4585@2|Bacteria,4NI1V@976|Bacteroidetes,47Q3Z@768503|Cytophagia 976|Bacteroidetes T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3,TPR_10,TPR_12,TPR_8 DYD3_k127_906917_3 693979.Bache_0728 9.232e-08 64.0 COG3055@1|root,COG3055@2|Bacteria,4NG50@976|Bacteroidetes,2FN9K@200643|Bacteroidia,4AKF2@815|Bacteroidaceae 976|Bacteroidetes S COG NOG23382 non supervised orthologous group nanM - - - - - - - - - - - Kelch_1,Kelch_3,Kelch_4,Kelch_6 DYD3_k127_906917_0 1122621.ATZA01000005_gene611 9.597e-155 498.0 COG3533@1|root,COG3533@2|Bacteria,4NF8W@976|Bacteroidetes,1IPYH@117747|Sphingobacteriia 976|Bacteroidetes S Domain of unknown function - - - ko:K09955 - - - - ko00000 - - - DUF4986,Glyco_hydro_127 DYD3_k127_910778_1 700598.Niako_0718 2.109e-101 338.0 COG1409@1|root,COG1409@2|Bacteria,4NF9K@976|Bacteroidetes,1IRB6@117747|Sphingobacteriia 976|Bacteroidetes S C terminal of Calcineurin-like phosphoesterase - - - - - - - - - - - - DUF4985,GHL10,Metallophos,MetallophosC,MetallophosN DYD3_k127_910778_0 929556.Solca_0230 2.736e-222 697.0 COG4198@1|root,COG4198@2|Bacteria,4NEQC@976|Bacteroidetes,1INXC@117747|Sphingobacteriia 976|Bacteroidetes S Starch-binding associating with outer membrane - - - - - - - - - - - - SusD-like_2 DYD3_k127_910778_2 929556.Solca_0229 1.508e-48 175.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,4NDU8@976|Bacteroidetes,1IQ51@117747|Sphingobacteriia 976|Bacteroidetes P TonB-dependent receptor plug - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec DYD3_k127_913451_0 700598.Niako_1014 1.128e-189 600.0 COG1228@1|root,COG1228@2|Bacteria,4NFI3@976|Bacteroidetes,1IWRU@117747|Sphingobacteriia 976|Bacteroidetes Q COGs COG1228 Imidazolonepropionase and related amidohydrolase - - - - - - - - - - - - Amidohydro_1 DYD3_k127_913451_1 925409.KI911562_gene1119 1.13e-104 351.0 COG0531@1|root,COG0531@2|Bacteria,4NJPZ@976|Bacteroidetes,1IRQU@117747|Sphingobacteriia 976|Bacteroidetes E Amino acid permease - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 DYD3_k127_919068_1 700598.Niako_5458 1.925e-57 206.0 COG0795@1|root,COG0795@2|Bacteria,4NF8Y@976|Bacteroidetes,1IPXP@117747|Sphingobacteriia 976|Bacteroidetes S Permease, YjgP YjgQ family lptG - - ko:K11720 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ DYD3_k127_919068_2 1166018.FAES_3793 1.128e-51 193.0 COG2318@1|root,COG2318@2|Bacteria,4NN7V@976|Bacteroidetes,47QXV@768503|Cytophagia 976|Bacteroidetes S DinB family - - - - - - - - - - - - DinB,DinB_2 DYD3_k127_919068_0 700598.Niako_5460 9.822e-147 466.0 COG0343@1|root,COG0343@2|Bacteria,4NE15@976|Bacteroidetes,1IVPN@117747|Sphingobacteriia 976|Bacteroidetes J Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) tgt - 2.4.2.29 ko:K00773 - - R03789,R10209 RC00063 ko00000,ko01000,ko03016 - - - TGT DYD3_k127_942237_3 1341181.FLJC2902T_31930 3.111e-16 81.0 2EGJP@1|root,32FFZ@2|Bacteria,4PB6D@976|Bacteroidetes,1IDE1@117743|Flavobacteriia,2NY3X@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_942237_1 1123248.KB893321_gene518 6.12e-80 268.0 COG0225@1|root,COG0225@2|Bacteria,4NMAJ@976|Bacteroidetes,1IS23@117747|Sphingobacteriia 976|Bacteroidetes O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine msrA - 1.8.4.11,1.8.4.12 ko:K07304,ko:K12267 - - - - ko00000,ko01000 - - - PMSR,SelR DYD3_k127_942237_4 471854.Dfer_2854 4.698e-14 74.0 2DQT7@1|root,338H4@2|Bacteria,4NX03@976|Bacteroidetes,47STS@768503|Cytophagia 976|Bacteroidetes S Protein of unknown function (DUF2798) - - - - - - - - - - - - DUF2798 DYD3_k127_942237_0 761193.Runsl_3292 4.413e-201 634.0 COG1252@1|root,COG1252@2|Bacteria,4NE0H@976|Bacteroidetes,47K1Q@768503|Cytophagia 976|Bacteroidetes C PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - 1.6.99.3 ko:K03885 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyr_redox_2 DYD3_k127_942237_2 1121481.AUAS01000004_gene1437 3.565e-40 152.0 COG2353@1|root,COG2353@2|Bacteria,4NNMD@976|Bacteroidetes,47PQN@768503|Cytophagia 976|Bacteroidetes S YceI-like domain - - - - - - - - - - - - YceI DYD3_k127_945327_0 700598.Niako_6439 4.813e-166 531.0 COG1629@1|root,COG4771@2|Bacteria,4PN3U@976|Bacteroidetes,1J0TZ@117747|Sphingobacteriia 976|Bacteroidetes P Outer membrane protein beta-barrel family - - - - - - - - - - - - CarboxypepD_reg,OMP_b-brl_3 DYD3_k127_945327_4 1179773.BN6_46850 1.047e-05 54.0 COG3485@1|root,COG3485@2|Bacteria,2GNNC@201174|Actinobacteria,4E1U6@85010|Pseudonocardiales 201174|Actinobacteria Q Catechol dioxygenase N terminus chqB - 1.13.11.1 ko:K03381 ko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220 M00568 R00817,R04258,R05299,R08114,R08115,R09134 RC00388,RC00535,RC01366 ko00000,ko00001,ko00002,ko01000 - - - Dioxygenase_C,Dioxygenase_N DYD3_k127_945327_3 700598.Niako_6442 1.601e-74 260.0 28J3Q@1|root,2Z8ZW@2|Bacteria,4NGJW@976|Bacteroidetes,1IUBQ@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (Porph_ging) - - - - - - - - - - - - Porph_ging DYD3_k127_945327_1 700598.Niako_6443 1.028e-162 526.0 COG0642@1|root,COG2205@2|Bacteria,4NI8C@976|Bacteroidetes,1IWXD@117747|Sphingobacteriia 976|Bacteroidetes T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA DYD3_k127_945327_2 700598.Niako_6444 1.069e-98 327.0 COG0745@1|root,COG0745@2|Bacteria,4NMAD@976|Bacteroidetes,1J08B@117747|Sphingobacteriia 976|Bacteroidetes T Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C DYD3_k127_950572_2 435591.BDI_1685 1.419e-86 290.0 COG0457@1|root,COG0457@2|Bacteria,4P4TG@976|Bacteroidetes,2FX8R@200643|Bacteroidia 976|Bacteroidetes S Domain of unknown function (DUF5107) - - - - - - - - - - - - DUF5107 DYD3_k127_950572_0 1123248.KB893326_gene1461 3.442e-289 898.0 COG3934@1|root,COG3934@2|Bacteria,4NF13@976|Bacteroidetes,1IRK6@117747|Sphingobacteriia 976|Bacteroidetes G Domain of unknown function (DUF4091) - - - - - - - - - - - - DUF4091 DYD3_k127_950572_1 700598.Niako_0190 9.736e-167 530.0 COG1262@1|root,COG1262@2|Bacteria,4NFR2@976|Bacteroidetes,1IPME@117747|Sphingobacteriia 976|Bacteroidetes S PFAM Formylglycine-generating sulfatase enzyme - - - - - - - - - - - - FGE-sulfatase DYD3_k127_950572_4 700598.Niako_3565 1.949e-13 71.0 COG0474@1|root,COG0474@2|Bacteria,4NERM@976|Bacteroidetes,1IR88@117747|Sphingobacteriia 976|Bacteroidetes P TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter - - 3.6.3.8 ko:K01537 - - - - ko00000,ko01000 3.A.3.2 - - Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3 DYD3_k127_952591_2 700598.Niako_5674 4.634e-120 389.0 COG2304@1|root,COG2304@2|Bacteria,4NDUC@976|Bacteroidetes,1IP6P@117747|Sphingobacteriia 976|Bacteroidetes S von Willebrand factor, type A batA - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - BatA,VWA DYD3_k127_952591_3 700598.Niako_5675 1.089e-99 333.0 COG3088@1|root,COG3088@2|Bacteria,4NGHU@976|Bacteroidetes 976|Bacteroidetes O Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - DYD3_k127_952591_1 700598.Niako_5676 2.185e-157 499.0 COG1721@1|root,COG1721@2|Bacteria,4NG0C@976|Bacteroidetes,1IRJS@117747|Sphingobacteriia 976|Bacteroidetes S protein (some members contain a von Willebrand factor type A (vWA) domain) - - - - - - - - - - - - DUF58 DYD3_k127_952591_0 700598.Niako_5677 1.226e-190 597.0 COG0714@1|root,COG0714@2|Bacteria,4NDVZ@976|Bacteroidetes,1IPXJ@117747|Sphingobacteriia 976|Bacteroidetes S PFAM ATPase family associated with various cellular activities (AAA) moxR - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 DYD3_k127_952591_4 700598.Niako_5678 4.403e-27 118.0 2CEPF@1|root,2ZR55@2|Bacteria,4P826@976|Bacteroidetes 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_953116_1 700598.Niako_7029 1.538e-140 450.0 COG0053@1|root,COG0053@2|Bacteria,4NEID@976|Bacteroidetes,1IP0G@117747|Sphingobacteriia 976|Bacteroidetes P Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family fieF - - - - - - - - - - - Cation_efflux,ZT_dimer DYD3_k127_953116_0 700598.Niako_7028 7.649e-274 846.0 COG0624@1|root,COG0624@2|Bacteria,4NFGE@976|Bacteroidetes,1IQ95@117747|Sphingobacteriia 976|Bacteroidetes E Peptidase, family M20 M25 M40 dapE - - - - - - - - - - - M20_dimer,Peptidase_M20 DYD3_k127_977181_0 700598.Niako_5143 1.152e-122 403.0 COG2133@1|root,COG2133@2|Bacteria,4NH6T@976|Bacteroidetes,1IV5S@117747|Sphingobacteriia 976|Bacteroidetes G Glucose / Sorbosone dehydrogenase - - - ko:K21430 - - - - ko00000,ko01000 - - - GSDH DYD3_k127_977181_3 1408813.AYMG01000003_gene2829 3.443e-15 79.0 2CFVU@1|root,3373K@2|Bacteria,4NY6U@976|Bacteroidetes,1ITZA@117747|Sphingobacteriia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_977181_1 700598.Niako_6611 7.847e-21 97.0 COG2250@1|root,COG2250@2|Bacteria 2|Bacteria S HEPN domain - - - - - - - - - - - - HEPN DYD3_k127_977181_4 1121101.HMPREF1532_03607 1.627e-10 66.0 29YIK@1|root,30KDQ@2|Bacteria,4PPIN@976|Bacteroidetes,2FVT4@200643|Bacteroidia,4ASRE@815|Bacteroidaceae 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_977181_2 700598.Niako_6608 2.238e-18 87.0 COG0590@1|root,COG0590@2|Bacteria,4NNJ2@976|Bacteroidetes,1ISDN@117747|Sphingobacteriia 976|Bacteroidetes FJ Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) tadA - 3.5.4.33 ko:K11991 - - R10223 RC00477 ko00000,ko01000,ko03016 - - - MafB19-deam,dCMP_cyt_deam_1 DYD3_k127_983678_4 700598.Niako_6745 4.89e-63 226.0 COG1596@1|root,COG1596@2|Bacteria,4NNJT@976|Bacteroidetes 976|Bacteroidetes M COG1596 Periplasmic protein involved in polysaccharide export - - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB DYD3_k127_983678_3 314225.ELI_13350 2.833e-65 226.0 COG0110@1|root,COG0110@2|Bacteria,1RDCP@1224|Proteobacteria,2TWW2@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Hexapeptide repeat of succinyl-transferase - - - - - - - - - - - - Hexapep DYD3_k127_983678_1 1313301.AUGC01000010_gene906 4.007e-125 408.0 COG0673@1|root,COG0673@2|Bacteria,4NFY3@976|Bacteroidetes 976|Bacteroidetes E Oxidoreductase NAD-binding domain protein - - 1.1.1.335 ko:K13016 ko00520,map00520 - R10140 RC00182 ko00000,ko00001,ko01000,ko01005 - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_983678_2 700598.Niako_6744 1.118e-69 239.0 COG0250@1|root,COG0250@2|Bacteria,4NSVU@976|Bacteroidetes,1IY1X@117747|Sphingobacteriia 976|Bacteroidetes K PFAM Transcription antitermination protein, NusG, N-terminal - - - - - - - - - - - - KOW,NusG DYD3_k127_983678_0 700598.Niako_6743 1.587e-191 604.0 COG4299@1|root,COG4299@2|Bacteria,4NDZF@976|Bacteroidetes,1IQFR@117747|Sphingobacteriia 976|Bacteroidetes S Protein of unknown function (DUF1624) - - - - - - - - - - - - DUF1624,DUF5009 DYD3_k127_983678_5 1121373.KB903632_gene587 9.373e-34 143.0 COG1835@1|root,COG1835@2|Bacteria,4NR9B@976|Bacteroidetes,47T8B@768503|Cytophagia 976|Bacteroidetes I Acyltransferase family - - - - - - - - - - - - Acyl_transf_3 DYD3_k127_991897_2 700598.Niako_1611 7.423e-105 342.0 COG2912@1|root,COG2912@2|Bacteria,4NF8R@976|Bacteroidetes,1IP0V@117747|Sphingobacteriia 976|Bacteroidetes S Transglutaminase-like superfamily - - - - - - - - - - - - Transglut_core2 DYD3_k127_991897_1 1123248.KB893385_gene4824 2.669e-237 740.0 COG0673@1|root,COG0673@2|Bacteria,4NEN5@976|Bacteroidetes,1IRBM@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase - - - - - - - - - - - - GFO_IDH_MocA DYD3_k127_991897_0 1123248.KB893318_gene4164 2.517e-245 764.0 COG0673@1|root,COG0673@2|Bacteria,4NEN5@976|Bacteroidetes,1IRBM@117747|Sphingobacteriia 976|Bacteroidetes S Oxidoreductase - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C DYD3_k127_991897_4 700598.Niako_1609 4.989e-63 219.0 COG1764@1|root,COG1764@2|Bacteria,4NQKB@976|Bacteroidetes,1IT1Y@117747|Sphingobacteriia 976|Bacteroidetes O TIGRFAM Peroxiredoxin, osmotically inducible protein C, subgroup - - - ko:K04063 - - - - ko00000 - - - OsmC DYD3_k127_991897_5 700598.Niako_1608 1.12e-54 192.0 COG0073@1|root,COG0073@2|Bacteria,4NQ9I@976|Bacteroidetes,1ISRQ@117747|Sphingobacteriia 976|Bacteroidetes J Export-related chaperone CsaA csaA - - ko:K06878 - - - - ko00000 - - - tRNA_bind DYD3_k127_991897_3 700598.Niako_1607 5.229e-80 269.0 COG0350@1|root,COG0350@2|Bacteria,4NFYC@976|Bacteroidetes,1IYID@117747|Sphingobacteriia 976|Bacteroidetes L 6-O-methylguanine DNA methyltransferase, DNA binding domain ogt - 2.1.1.63 ko:K00567,ko:K10778 - - - - ko00000,ko01000,ko03000,ko03400 - - - DNA_binding_1,Methyltransf_1N DYD3_k127_996381_0 700598.Niako_4953 6.298e-309 970.0 COG1572@1|root,COG1572@2|Bacteria,4NFAX@976|Bacteroidetes,1IUXA@117747|Sphingobacteriia 976|Bacteroidetes S Peptidase family C25 - - - - - - - - - - - - CARDB,FlgD_ig,ILEI,Peptidase_C25 DYD3_k127_996381_1 471854.Dfer_2812 3.668e-300 930.0 COG2192@1|root,COG2192@2|Bacteria,4NEV9@976|Bacteroidetes,47JR5@768503|Cytophagia 976|Bacteroidetes O PFAM Carbamoyltransferase - - - ko:K00612 - - - - ko00000,ko01000 - - - Carbam_trans_C,Carbam_trans_N DYD3_k127_996381_5 649349.Lbys_3368 4.469e-13 69.0 2EGPU@1|root,33AFZ@2|Bacteria,4NXYH@976|Bacteroidetes,47S90@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_996381_2 471854.Dfer_0105 3.369e-35 149.0 COG2755@1|root,COG2755@2|Bacteria,4PAZ7@976|Bacteroidetes,47UVP@768503|Cytophagia 2|Bacteria E lipolytic protein G-D-S-L family - - - - - - - - - - - - - DYD3_k127_996381_3 1279009.ADICEAN_03016 1.742e-33 147.0 2CV66@1|root,32SWY@2|Bacteria,4NT2K@976|Bacteroidetes,47V7J@768503|Cytophagia 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_996381_4 1107311.Q767_11620 2.275e-19 100.0 2CV66@1|root,32SWY@2|Bacteria,4NT2K@976|Bacteroidetes,1HY5A@117743|Flavobacteriia,2NU93@237|Flavobacterium 976|Bacteroidetes - - - - - - - - - - - - - - - DYD3_k127_99794_1 700598.Niako_4511 1.417e-141 453.0 COG0077@1|root,COG0077@2|Bacteria,4NEEK@976|Bacteroidetes,1IQJU@117747|Sphingobacteriia 976|Bacteroidetes E Prephenate dehydratase pheA - 4.2.1.51 ko:K04518 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00024 R00691,R01373 RC00360 ko00000,ko00001,ko00002,ko01000 - - - PDT DYD3_k127_99794_0 700598.Niako_4510 1.931e-189 595.0 COG0436@1|root,COG0436@2|Bacteria,4NF2E@976|Bacteroidetes,1IW5P@117747|Sphingobacteriia 976|Bacteroidetes E Aminotransferase class I and II dapL - 2.6.1.83 ko:K10206,ko:K14261 ko00300,ko01100,ko01110,ko01130,ko01230,map00300,map01100,map01110,map01130,map01230 M00527 R07613 RC00006,RC01847 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 ## 4147 queries scanned ## Total time (seconds): 4.585567951202393 ## Rate: 904.36 q/s