## Mon Mar 17 01:09:19 2025
## emapper-2.1.9
## /home/zhangkaihang/.conda/envs/eggnog-mapper/bin/emapper.py -i /home/zhangkaihang/metadata_analysis/metawrap/paddysoil/4paddy/bin4gtdbtk/DYD3_bin.39.fa -m mmseqs --itype genome -o DYD3_bin.39 --output_dir /home/zhangkaihang/metadata_analysis/eggnog-mapper/paddysoil/4paddy/DYD3_bin.39 --cpu 8
##
#query	seed_ortholog	evalue	score	eggNOG_OGs	max_annot_lvl	COG_category	Description	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	PFAMs
DYD3_k127_1020456_4	316067.Geob_0185	2.698e-19	89.0	2E9PU@1|root,333W6@2|Bacteria,1N6VC@1224|Proteobacteria,42WJ7@68525|delta/epsilon subdivisions,2WRB6@28221|Deltaproteobacteria	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1020456_1	323261.Noc_1568	4.545e-48	176.0	COG2337@1|root,COG2337@2|Bacteria,1RIPH@1224|Proteobacteria,1S7VW@1236|Gammaproteobacteria,1WYQY@135613|Chromatiales	135613|Chromatiales	L	Toxic component of a toxin-antitoxin (TA) module	-	-	-	ko:K07171	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PemK_toxin
DYD3_k127_1020456_5	237368.SCABRO_03149	3.05e-19	89.0	COG0864@1|root,COG0864@2|Bacteria	2|Bacteria	K	response to nickel cation	-	-	-	ko:K07722	-	-	-	-	ko00000,ko03000	-	-	-	RHH_1
DYD3_k127_1020456_2	388467.A19Y_0945	1.074e-28	119.0	COG4634@1|root,COG4634@2|Bacteria,1G6P5@1117|Cyanobacteria,1HBE2@1150|Oscillatoriales	1117|Cyanobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1020456_3	118173.KB235914_gene1427	2.671e-26	109.0	COG2442@1|root,COG2442@2|Bacteria,1G7SB@1117|Cyanobacteria,1HCGW@1150|Oscillatoriales	1117|Cyanobacteria	S	Protein of unknown function (DUF433)	-	-	-	-	-	-	-	-	-	-	-	-	DUF433
DYD3_k127_1020456_0	909663.KI867150_gene2010	5.386e-89	310.0	COG3328@1|root,COG3328@2|Bacteria,1MU4P@1224|Proteobacteria,42S30@68525|delta/epsilon subdivisions,2WQ5S@28221|Deltaproteobacteria,2MRTS@213462|Syntrophobacterales	28221|Deltaproteobacteria	L	Transposase, Mutator family	-	-	-	-	-	-	-	-	-	-	-	-	Transposase_mut
DYD3_k127_1020456_6	290318.Cvib_1332	6.119e-10	60.0	COG2957@1|root,COG2957@2|Bacteria,1FD95@1090|Chlorobi	1090|Chlorobi	E	Belongs to the agmatine deiminase family	-	-	3.5.3.12	ko:K10536	ko00330,ko01100,map00330,map01100	-	R01416	RC00177	ko00000,ko00001,ko01000	-	-	-	PAD_porph
DYD3_k127_1051271_0	1209072.ALBT01000045_gene2658	9.762e-48	175.0	COG1873@1|root,COG1873@2|Bacteria,1QTWZ@1224|Proteobacteria,1SABC@1236|Gammaproteobacteria,1FIAA@10|Cellvibrio	1236|Gammaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
DYD3_k127_1051271_1	1229205.BUPH_05978	3.05e-15	76.0	COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2VHQ8@28216|Betaproteobacteria,1K0H7@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Amidase, hydantoinase carbamoylase family	-	-	3.5.1.6,3.5.1.87	ko:K06016	ko00240,ko01100,map00240,map01100	M00046	R00905,R04666	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
DYD3_k127_1056121_0	716544.wcw_0527	1.395e-42	157.0	COG4804@1|root,COG4804@2|Bacteria,2JG0J@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF1016)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1016
DYD3_k127_1056121_1	383372.Rcas_4353	1.054e-40	153.0	COG0614@1|root,COG0614@2|Bacteria,2G9KR@200795|Chloroflexi,377DT@32061|Chloroflexia	32061|Chloroflexia	P	PD-(D/E)XK nuclease superfamily	-	-	-	-	-	-	-	-	-	-	-	-	PDDEXK_3
DYD3_k127_1056121_3	870967.VIS19158_13897	4.109e-15	83.0	COG3039@1|root,COG3039@2|Bacteria,1MXTN@1224|Proteobacteria,1RM94@1236|Gammaproteobacteria,1XVGA@135623|Vibrionales	135623|Vibrionales	L	User locus_tag	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_5
DYD3_k127_1056121_2	329726.AM1_0968	1.253e-29	123.0	COG3039@1|root,COG3039@2|Bacteria,1G7AF@1117|Cyanobacteria	1117|Cyanobacteria	L	Transposase IS4 family	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_5
DYD3_k127_1056121_4	349161.Dred_0027	0.0001764	46.0	COG1846@1|root,COG1846@2|Bacteria,1TSQ4@1239|Firmicutes,2498J@186801|Clostridia	186801|Clostridia	K	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_11	515622.bpr_I2371	8.825e-19	94.0	COG0244@1|root,COG0244@2|Bacteria,1V3JJ@1239|Firmicutes,24G9R@186801|Clostridia,4BX28@830|Butyrivibrio	186801|Clostridia	J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	rplJ	-	-	ko:K02864	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L10
DYD3_k127_1074917_9	1121351.AUAP01000024_gene1647	1.607e-31	129.0	COG0222@1|root,COG0222@2|Bacteria,1RGU4@1224|Proteobacteria,2VSG7@28216|Betaproteobacteria,2KR8H@206351|Neisseriales	206351|Neisseriales	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	rplL	-	-	ko:K02935	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L12,Ribosomal_L12_N
DYD3_k127_1074917_20	946077.W5A_13145	2.056e-06	57.0	COG0640@1|root,COG0640@2|Bacteria,4NS23@976|Bacteroidetes,1I40U@117743|Flavobacteriia	976|Bacteroidetes	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_DeoR
DYD3_k127_1074917_10	1382306.JNIM01000001_gene2994	3.166e-26	117.0	COG0668@1|root,COG0668@2|Bacteria	2|Bacteria	M	transmembrane transport	cmpX	-	-	-	-	-	-	-	-	-	-	-	MS_channel,TM_helix
DYD3_k127_1074917_19	941770.GL622179_gene412	1.691e-06	53.0	2DSV3@1|root,33HII@2|Bacteria,1VQ64@1239|Firmicutes,4IGTW@91061|Bacilli,3F8RY@33958|Lactobacillaceae	91061|Bacilli	S	ORF located using Blastx	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_21	4006.Lus10021618	4.367e-06	48.0	2E30T@1|root,2SA69@2759|Eukaryota,37XUE@33090|Viridiplantae,3GMF3@35493|Streptophyta	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_17	123214.PERMA_1141	2.586e-08	57.0	2DQZN@1|root,339JB@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_24	1124780.ANNU01000014_gene3894	0.000134	44.0	2ABF6@1|root,310W3@2|Bacteria,4NYJ8@976|Bacteroidetes	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_18	4081.Solyc01g007730.2.1	1.289e-06	52.0	2D340@1|root,2S4ZM@2759|Eukaryota,37WJF@33090|Viridiplantae,3GKNG@35493|Streptophyta,44UBU@71274|asterids	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_22	1131553.JIBI01000020_gene218	5.509e-06	50.0	arCOG05874@1|root,2ZJ01@2|Bacteria,1N8VY@1224|Proteobacteria,2W4ZN@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_13	1035839.AFNK01000029_gene1332	2.16e-16	83.0	2AU0F@1|root,31JKB@2|Bacteria,1RGGF@1224|Proteobacteria,1S5B2@1236|Gammaproteobacteria,1Y8GF@135625|Pasteurellales	135625|Pasteurellales	S	by Glimmer3	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_14	1121012.AUKX01000005_gene3714	8.532e-11	63.0	2AU0F@1|root,31JKB@2|Bacteria,4NHS6@976|Bacteroidetes,1I02M@117743|Flavobacteriia	976|Bacteroidetes	S	COG NOG14600 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1074917_23	1317122.ATO12_15440	0.0001208	53.0	COG1404@1|root,COG3291@1|root,COG3975@1|root,COG4935@1|root,COG1404@2|Bacteria,COG3291@2|Bacteria,COG3975@2|Bacteria,COG4935@2|Bacteria,4NHDH@976|Bacteroidetes,1IF30@117743|Flavobacteriia,2YIBS@290174|Aquimarina	976|Bacteroidetes	O	Peptidase family M9 N-terminal	-	-	-	-	-	-	-	-	-	-	-	-	PKD,Peptidase_M9,Peptidase_M9_N
DYD3_k127_1074917_2	264462.Bd2461	1.881e-63	232.0	COG0772@1|root,COG0772@2|Bacteria,1MUK3@1224|Proteobacteria,42MQT@68525|delta/epsilon subdivisions,2MSU0@213481|Bdellovibrionales,2WIP1@28221|Deltaproteobacteria	213481|Bdellovibrionales	M	Peptidoglycan polymerase that is essential for cell wall elongation	mrdB	-	-	ko:K05837	-	-	-	-	ko00000,ko03036	-	-	-	FTSW_RODA_SPOVE
DYD3_k127_1074917_6	697284.ERIC2_c20230	2.723e-42	170.0	COG0438@1|root,COG0438@2|Bacteria,1TPY6@1239|Firmicutes,4HE6J@91061|Bacilli	91061|Bacilli	M	Glycosyl transferase 4-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_1074917_5	1046627.BZARG_626	6.896e-48	189.0	COG2148@1|root,COG2148@2|Bacteria,4NFIA@976|Bacteroidetes,1HXE1@117743|Flavobacteriia	976|Bacteroidetes	M	sugar transferase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_transf,CoA_binding_3
DYD3_k127_1074917_15	468556.AQYG01000029_gene400	6.324e-10	70.0	COG0451@1|root,COG0451@2|Bacteria,2GNT1@201174|Actinobacteria,4GBTS@85026|Gordoniaceae	201174|Actinobacteria	GM	GDP-mannose 4,6 dehydratase	galE2	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	iNJ661.Rv0501	Epimerase
DYD3_k127_1074917_7	670487.Ocepr_1655	2.561e-38	154.0	COG0190@1|root,COG0190@2|Bacteria,1WI3X@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	F	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	folD	-	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000	-	-	-	THF_DHG_CYH,THF_DHG_CYH_C
DYD3_k127_1074917_1	246194.CHY_1057	3.942e-74	259.0	COG0451@1|root,COG0451@2|Bacteria,1V34Y@1239|Firmicutes,25EDZ@186801|Clostridia,42JFW@68295|Thermoanaerobacterales	186801|Clostridia	M	RmlD substrate binding domain	-	-	4.1.1.35,5.1.3.2,5.1.3.20,5.1.3.7	ko:K01784,ko:K02473,ko:K03274,ko:K08678	ko00052,ko00520,ko00540,ko01100,map00052,map00520,map00540,map01100	M00064,M00361,M00362,M00632	R00291,R00418,R01384,R02984,R05176	RC00289,RC00508,RC01291	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_1074917_0	747365.Thena_0155	1.155e-89	311.0	COG0342@1|root,COG0342@2|Bacteria,1TQVT@1239|Firmicutes,247X8@186801|Clostridia,42F9I@68295|Thermoanaerobacterales	186801|Clostridia	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secD	-	-	ko:K03072,ko:K12257	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
DYD3_k127_1074917_4	309801.trd_0649	4.484e-48	184.0	COG0341@1|root,COG0341@2|Bacteria,2G696@200795|Chloroflexi,27Y1D@189775|Thermomicrobia	189775|Thermomicrobia	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secF	-	-	ko:K03074	ko03060,ko03070,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
DYD3_k127_1074917_8	2903.EOD27628	5.326e-38	149.0	KOG1584@1|root,KOG1584@2759|Eukaryota	2759|Eukaryota	S	sulfotransferase activity	St1	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0006805,GO:0006950,GO:0006952,GO:0008146,GO:0008150,GO:0008152,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016740,GO:0016782,GO:0042221,GO:0042742,GO:0043207,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0051923,GO:0070887,GO:0071466,GO:0098542	2.8.2.1,2.8.2.4	ko:K01014,ko:K01016,ko:K01025	ko00140,ko05204,map00140,map05204	-	R01242,R02350	RC00007,RC00128	ko00000,ko00001,ko01000	-	-	-	Sulfotransfer_1
DYD3_k127_1074917_3	1380391.JIAS01000019_gene1135	2.221e-61	215.0	COG0189@1|root,COG0189@2|Bacteria,1MVUA@1224|Proteobacteria,2TQNE@28211|Alphaproteobacteria,2JPV4@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the prokaryotic GSH synthase family	gshB	-	6.3.2.3	ko:K01920	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00497,R10994	RC00096,RC00141	ko00000,ko00001,ko00002,ko01000	-	-	-	GSH-S_ATP,GSH-S_N
DYD3_k127_1074917_12	1254432.SCE1572_04875	1.148e-16	83.0	COG2084@1|root,COG2084@2|Bacteria,1RC5B@1224|Proteobacteria	1224|Proteobacteria	I	NAD binding domain of 6-phosphogluconate dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_2
DYD3_k127_1076114_25	1101188.KI912155_gene1757	9.51e-12	68.0	COG1254@1|root,COG1254@2|Bacteria,2IQ4M@201174|Actinobacteria	201174|Actinobacteria	C	Belongs to the acylphosphatase family	acyP	GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818	3.6.1.7	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	-	R00317,R01421,R01515	RC00043	ko00000,ko00001,ko01000	-	-	-	Acylphosphatase
DYD3_k127_1076114_10	688269.Theth_1784	1.161e-56	205.0	COG0020@1|root,COG0020@2|Bacteria,2GC3V@200918|Thermotogae	200918|Thermotogae	H	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids	uppS	GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617	2.5.1.31	ko:K00806	ko00900,ko01110,map00900,map01110	-	R06447	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006	-	-	iLJ478.TM1398	Prenyltransf
DYD3_k127_1076114_11	309801.trd_1197	2.028e-50	192.0	COG0142@1|root,COG0142@2|Bacteria,2G6BM@200795|Chloroflexi,27XX1@189775|Thermomicrobia	189775|Thermomicrobia	H	Belongs to the FPP GGPP synthase family	-	-	2.5.1.1,2.5.1.10,2.5.1.29	ko:K13787	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364,M00365	R01658,R02003,R02061	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	polyprenyl_synt
DYD3_k127_1076114_13	1122939.ATUD01000019_gene1544	3.419e-41	161.0	COG0564@1|root,COG0564@2|Bacteria,2GIY1@201174|Actinobacteria,4CQ1Y@84995|Rubrobacteria	84995|Rubrobacteria	J	Responsible for synthesis of pseudouridine from uracil	-	-	5.4.99.23	ko:K06180	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_1076114_23	1423775.BAMN01000006_gene959	6.14e-23	104.0	COG0335@1|root,COG0335@2|Bacteria,1V6FT@1239|Firmicutes,4HIK3@91061|Bacilli,3F6K4@33958|Lactobacillaceae	91061|Bacilli	J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	rplS	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02884	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L19
DYD3_k127_1076114_33	458233.MCCL_1249	9.637e-05	49.0	COG0782@1|root,COG0782@2|Bacteria,1V44S@1239|Firmicutes,4HGZU@91061|Bacilli,4GXB7@90964|Staphylococcaceae	91061|Bacilli	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	greA	GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576	-	ko:K03624	-	-	-	-	ko00000,ko03021	-	-	-	GreA_GreB,GreA_GreB_N
DYD3_k127_1076114_22	1227499.C493_07289	6.138e-23	105.0	COG2096@1|root,arCOG00489@2157|Archaea,2XTKK@28890|Euryarchaeota,23SAS@183963|Halobacteria	183963|Halobacteria	H	ATP cobalamin adenosyltransferase	pduO	-	2.5.1.17	ko:K00798	ko00860,ko01100,map00860,map01100	M00122	R01492,R05220,R07268	RC00533	ko00000,ko00001,ko00002,ko01000	-	-	-	Cob_adeno_trans
DYD3_k127_1076114_21	671143.DAMO_2910	2.961e-24	111.0	2EHMT@1|root,33BDH@2|Bacteria	2|Bacteria	S	Alternative oxidase	-	-	-	-	-	-	-	-	-	-	-	-	AOX
DYD3_k127_1076114_18	1501391.LG35_08175	6.679e-33	132.0	COG1970@1|root,COG1970@2|Bacteria,4NQ49@976|Bacteroidetes,2FT2E@200643|Bacteroidia,22VGU@171550|Rikenellaceae	976|Bacteroidetes	M	Large-conductance mechanosensitive channel, MscL	mscL	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066	-	ko:K03282	-	-	-	-	ko00000,ko02000	1.A.22.1	-	-	MscL
DYD3_k127_1076114_20	935863.AWZR01000002_gene826	9.258e-26	117.0	COG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,1RP7T@1236|Gammaproteobacteria,1X44K@135614|Xanthomonadales	135614|Xanthomonadales	S	Protein of unknown function (DUF541)	-	-	-	ko:K09807	-	-	-	-	ko00000	-	-	-	SIMPL
DYD3_k127_1076114_32	1121352.JHZP01000014_gene1634	5.725e-05	48.0	COG0690@1|root,COG0690@2|Bacteria,1RDI9@1224|Proteobacteria,2VUEX@28216|Betaproteobacteria,2KRCY@206351|Neisseriales	206351|Neisseriales	U	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation	secE	-	-	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecE
DYD3_k127_1076114_9	457570.Nther_0180	4.623e-60	213.0	COG0250@1|root,COG0250@2|Bacteria,1TR3P@1239|Firmicutes,248XB@186801|Clostridia	186801|Clostridia	K	Participates in transcription elongation, termination and antitermination	nusG	-	-	ko:K02601	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	KOW,NusG
DYD3_k127_1076114_12	1121947.AUHK01000021_gene440	5.449e-48	175.0	COG0080@1|root,COG0080@2|Bacteria,1V1BS@1239|Firmicutes,24FSQ@186801|Clostridia,22HEU@1570339|Peptoniphilaceae	186801|Clostridia	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	rplK	-	-	ko:K02867	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L11,Ribosomal_L11_N
DYD3_k127_1076114_15	1121374.KB891575_gene1628	3.176e-38	149.0	COG0262@1|root,COG0262@2|Bacteria,1RH0P@1224|Proteobacteria,1S5VH@1236|Gammaproteobacteria	1236|Gammaproteobacteria	H	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis	folA	GO:0000166,GO:0003674,GO:0003824,GO:0004146,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016646,GO:0019842,GO:0031406,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0050896,GO:0051870,GO:0051871,GO:0055114,GO:0070401,GO:0070402,GO:0072341,GO:0097159,GO:1901265,GO:1901363	1.5.1.3	ko:K00287,ko:K18590	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	M00126,M00840	R00936,R00937,R00939,R00940,R02235,R02236,R11765	RC00109,RC00110,RC00158	br01600,ko00000,ko00001,ko00002,ko01000,ko01504	-	-	iECBD_1354.ECBD_3567,iECDH1ME8569_1439.ECDH1ME8569_0047,iECNA114_1301.ECNA114_0036,iEcDH1_1363.EcDH1_3551,iEcSMS35_1347.EcSMS35_0050,iG2583_1286.G2583_0050,iJN746.PP_5132,iNRG857_1313.NRG857_00250,iUMN146_1321.UM146_23020	DHFR_1
DYD3_k127_1076114_28	1341679.P253_01336	1.308e-07	59.0	COG0212@1|root,COG0212@2|Bacteria,1MZG0@1224|Proteobacteria,1S612@1236|Gammaproteobacteria,3NINP@468|Moraxellaceae	1236|Gammaproteobacteria	H	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	ygfA	GO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019752,GO:0022611,GO:0030272,GO:0032502,GO:0034641,GO:0035999,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046653,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.3.2	ko:K01934	ko00670,ko01100,map00670,map01100	-	R02301	RC00183	ko00000,ko00001,ko01000	-	-	iECABU_c1320.ECABU_c31940,iECOK1_1307.ECOK1_3298,iECSF_1327.ECSF_2705,iUTI89_1310.UTI89_C3298	5-FTHF_cyc-lig
DYD3_k127_1076114_7	5786.XP_003284301.1	5.877e-76	261.0	COG0717@1|root,2RDXQ@2759|Eukaryota,3XCUB@554915|Amoebozoa	554915|Amoebozoa	F	dUTPase	-	-	3.5.4.13	ko:K01494	ko00240,ko01100,map00240,map01100	M00053	R00568,R02325	RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	dUTPase
DYD3_k127_1076114_6	1192868.CAIU01000013_gene1818	1.257e-92	312.0	COG0207@1|root,COG0207@2|Bacteria,1MUBD@1224|Proteobacteria,2TQSB@28211|Alphaproteobacteria,43GVJ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	thyA	-	2.1.1.45	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	M00053	R02101	RC00219,RC00332	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylat_synt
DYD3_k127_1076114_17	656519.Halsa_0341	5.648e-33	136.0	COG0125@1|root,COG0125@2|Bacteria,1V1HE@1239|Firmicutes,24HHC@186801|Clostridia,3WAQ9@53433|Halanaerobiales	186801|Clostridia	F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis	tmk	-	2.7.4.9	ko:K00943	ko00240,ko01100,map00240,map01100	M00053	R02094,R02098	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylate_kin
DYD3_k127_1076114_1	641107.CDLVIII_3528	7.94e-143	464.0	COG0112@1|root,COG0112@2|Bacteria,1TQVM@1239|Firmicutes,248W5@186801|Clostridia,36EMY@31979|Clostridiaceae	186801|Clostridia	E	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism	glyA	-	2.1.2.1	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	M00140,M00141,M00346,M00532	R00945,R09099	RC00022,RC00112,RC01583,RC02958	ko00000,ko00001,ko00002,ko01000	-	-	-	SHMT
DYD3_k127_1076114_8	468059.AUHA01000003_gene1958	1.136e-70	260.0	COG0018@1|root,COG0018@2|Bacteria,4NE7Q@976|Bacteroidetes,1IQGR@117747|Sphingobacteriia	976|Bacteroidetes	J	Arginyl-tRNA synthetase	argS	GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.19	ko:K01887	ko00970,map00970	M00359,M00360	R03646	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d
DYD3_k127_1076114_0	266117.Rxyl_2428	1.578e-205	679.0	COG0060@1|root,COG0060@2|Bacteria,2GK9M@201174|Actinobacteria,4CP6P@84995|Rubrobacteria	84995|Rubrobacteria	J	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)	ileS	-	6.1.1.5	ko:K01870	ko00970,map00970	M00359,M00360	R03656	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1
DYD3_k127_1076114_29	91464.S7335_1901	1.93e-06	57.0	COG1381@1|root,COG1381@2|Bacteria,1G06V@1117|Cyanobacteria,1GYRD@1129|Synechococcus	1117|Cyanobacteria	L	Involved in DNA repair and RecF pathway recombination	recO	-	-	ko:K03584	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecO_C,RecO_N
DYD3_k127_1076114_2	1382356.JQMP01000003_gene2141	3.027e-141	462.0	COG0423@1|root,COG0423@2|Bacteria,2G62M@200795|Chloroflexi,27XGU@189775|Thermomicrobia	189775|Thermomicrobia	J	Catalyzes the attachment of glycine to tRNA(Gly)	-	GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101	6.1.1.14	ko:K01880	ko00970,map00970	M00359,M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	HGTP_anticodon,tRNA-synt_2b
DYD3_k127_1076114_24	498848.TaqDRAFT_3923	1.591e-21	106.0	COG0628@1|root,COG0628@2|Bacteria,1WIXU@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	S	COGs COG0628 permease	-	-	-	-	-	-	-	-	-	-	-	-	AI-2E_transport
DYD3_k127_1076114_5	211114.JOEF01000001_gene7201	1.35e-111	376.0	COG0143@1|root,COG0143@2|Bacteria,2GK4S@201174|Actinobacteria,4E07J@85010|Pseudonocardiales	201174|Actinobacteria	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	-	-	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1g
DYD3_k127_1076114_14	1178540.BA70_10180	1.963e-40	160.0	COG0084@1|root,COG0084@2|Bacteria,1TNY1@1239|Firmicutes,4HA74@91061|Bacilli,1ZB78@1386|Bacillus	91061|Bacilli	L	hydrolase, TatD	tatD	GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575	-	ko:K03424	-	-	-	-	ko00000,ko01000	-	-	-	TatD_DNase
DYD3_k127_1076114_31	1313421.JHBV01000037_gene2883	2.288e-05	53.0	COG0360@1|root,COG0360@2|Bacteria,4NQ9W@976|Bacteroidetes,1ISJI@117747|Sphingobacteriia	976|Bacteroidetes	J	Binds together with S18 to 16S ribosomal RNA	rpsF	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904	-	ko:K02990	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S6
DYD3_k127_1076114_16	3988.XP_002536227.1	2.091e-36	142.0	COG0629@1|root,KOG1653@2759|Eukaryota	2759|Eukaryota	L	single-stranded DNA binding	-	-	-	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	-	-	-	ko00000,ko00001,ko03029,ko03032,ko03400	-	-	-	SSB
DYD3_k127_1076114_26	679192.HMPREF9013_0960	3.967e-10	63.0	COG0238@1|root,COG0238@2|Bacteria,1V9XS@1239|Firmicutes,3VRD8@526524|Erysipelotrichia	526524|Erysipelotrichia	J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	rpsR	-	-	ko:K02963	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S18
DYD3_k127_1076114_19	519989.ECTPHS_05025	1.676e-30	127.0	COG0231@1|root,COG0231@2|Bacteria,1MW2J@1224|Proteobacteria,1RPW7@1236|Gammaproteobacteria,1WX8C@135613|Chromatiales	135613|Chromatiales	J	Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation	efp	-	-	ko:K02356	-	-	-	-	ko00000,ko03012	-	-	-	EFP,EFP_N,Elong-fact-P_C
DYD3_k127_1076114_27	1121904.ARBP01000039_gene2503	5.803e-10	68.0	COG1595@1|root,COG1595@2|Bacteria,4NQP5@976|Bacteroidetes	976|Bacteroidetes	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_1076114_4	1168067.JAGP01000001_gene1613	1.149e-129	422.0	COG0468@1|root,COG0468@2|Bacteria,1MU3C@1224|Proteobacteria,1RMHP@1236|Gammaproteobacteria,45ZTK@72273|Thiotrichales	72273|Thiotrichales	L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	recA	-	-	ko:K03553	ko03440,map03440	M00729	-	-	ko00000,ko00001,ko00002,ko03400	-	-	-	RecA
DYD3_k127_1076114_30	246197.MXAN_5598	1.142e-05	51.0	COG2885@1|root,COG2885@2|Bacteria,1MX1F@1224|Proteobacteria,42UTB@68525|delta/epsilon subdivisions,2WQUW@28221|Deltaproteobacteria,2YUE1@29|Myxococcales	28221|Deltaproteobacteria	M	Belongs to the ompA family	-	-	-	ko:K20276	ko02024,map02024	-	-	-	ko00000,ko00001	-	-	-	Big_3_2,DUF11,OmpA,TSP_3
DYD3_k127_1076114_3	1157490.EL26_05275	1.103e-134	455.0	COG1674@1|root,COG1674@2|Bacteria,1TPJR@1239|Firmicutes,4H9WA@91061|Bacilli,277W0@186823|Alicyclobacillaceae	91061|Bacilli	D	Belongs to the FtsK SpoIIIE SftA family	ftsK	GO:0000003,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019954,GO:0030436,GO:0031323,GO:0031326,GO:0032502,GO:0043934,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141	-	ko:K03466	-	-	-	-	ko00000,ko03036	3.A.12	-	-	FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma
DYD3_k127_1093692_1	1123508.JH636443_gene4982	4.399e-33	130.0	COG0491@1|root,COG0491@2|Bacteria,2IXNH@203682|Planctomycetes	203682|Planctomycetes	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1093692_0	640081.Dsui_2517	1.046e-78	274.0	COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,2VP05@28216|Betaproteobacteria	28216|Betaproteobacteria	L	transposase IS116 IS110 IS902 family protein	-	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110,Transposase_20
DYD3_k127_1093692_2	926550.CLDAP_10330	1.636e-15	79.0	COG0328@1|root,COG0328@2|Bacteria,2G6PS@200795|Chloroflexi	200795|Chloroflexi	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhA	-	3.1.26.4	ko:K03469	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	Cauli_VI,RNase_H
DYD3_k127_1098780_0	264732.Moth_2229	9.193e-112	367.0	COG2801@1|root,COG2801@2|Bacteria,1TRNK@1239|Firmicutes,24B7I@186801|Clostridia,42G6M@68295|Thermoanaerobacterales	186801|Clostridia	L	HTH-like domain	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,HTH_Tnp_1,rve,rve_3
DYD3_k127_1098780_1	485916.Dtox_2025	3.155e-21	96.0	COG2801@1|root,COG2963@1|root,COG2801@2|Bacteria,COG2963@2|Bacteria,1TRNK@1239|Firmicutes,24B7I@186801|Clostridia,2601S@186807|Peptococcaceae	186801|Clostridia	L	PFAM Transposase IS3 IS911	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,HTH_Tnp_1,rve,rve_3
DYD3_k127_1209140_0	1229909.NSED_02585	1.058e-68	234.0	COG3253@1|root,arCOG03031@2157|Archaea,41SGX@651137|Thaumarchaeota	651137|Thaumarchaeota	S	Chlorite dismutase	-	-	-	-	-	-	-	-	-	-	-	-	Chlor_dismutase
DYD3_k127_1209140_1	1131266.ARWQ01000005_gene827	2.19e-68	237.0	COG1715@1|root,arCOG09740@2157|Archaea,41T5F@651137|Thaumarchaeota	651137|Thaumarchaeota	V	Domain of unknown function (DUF1802)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1802
DYD3_k127_1209140_3	1121011.AUCB01000014_gene341	0.0003703	43.0	COG0667@1|root,COG0667@2|Bacteria,4NHA1@976|Bacteroidetes,1HZQF@117743|Flavobacteriia,23G37@178469|Arenibacter	976|Bacteroidetes	C	Aldo/keto reductase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD3_k127_1209140_2	886293.Sinac_2845	2.268e-31	128.0	COG1657@1|root,COG1657@2|Bacteria	2|Bacteria	I	PFAM Prenyltransferase squalene oxidase	-	-	4.2.1.129,5.4.99.17	ko:K06045	ko00909,ko01110,map00909,map01110	-	R07322,R07323	RC01850,RC01851	ko00000,ko00001,ko01000	-	-	-	Prenyltrans
DYD3_k127_1251405_8	1451261.AS96_14610	1.149e-05	59.0	COG3704@1|root,COG3704@2|Bacteria	2|Bacteria	U	protein secretion by the type IV secretion system	-	-	-	ko:K03201	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	TrbL
DYD3_k127_1251405_6	886882.PPSC2_p0161	2.87e-15	84.0	2DQGV@1|root,336S4@2|Bacteria,1VJ0B@1239|Firmicutes,4HZH4@91061|Bacilli	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1251405_1	882083.SacmaDRAFT_4144	1.023e-102	357.0	COG3451@1|root,COG3451@2|Bacteria,2GM5W@201174|Actinobacteria,4E1I0@85010|Pseudonocardiales	201174|Actinobacteria	U	Type IV secretory pathway, VirB4	-	-	-	-	-	-	-	-	-	-	-	-	AAA_10,DUF87,PrgI
DYD3_k127_1251405_5	386415.NT01CX_0871	1.443e-21	104.0	COG0706@1|root,COG0706@2|Bacteria,1TQ0J@1239|Firmicutes,247V9@186801|Clostridia,36FE7@31979|Clostridiaceae	186801|Clostridia	U	Membrane protein insertase, YidC Oxa1 family	oxaA	-	-	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9	-	-	60KD_IMP
DYD3_k127_1251405_7	990073.ATHU01000001_gene1652	1.68e-09	59.0	COG0230@1|root,COG0230@2|Bacteria,1NGGS@1224|Proteobacteria,42WSU@68525|delta/epsilon subdivisions,2YQ70@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	J	Belongs to the bacterial ribosomal protein bL34 family	rpmH	-	-	ko:K02914	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L34
DYD3_k127_1251405_2	525904.Tter_0001	7.839e-102	348.0	COG0593@1|root,COG0593@2|Bacteria,2NNTK@2323|unclassified Bacteria	2|Bacteria	L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	dnaA	GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990837	-	ko:K02313	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001,ko03032,ko03036	-	-	-	Bac_DnaA,Bac_DnaA_C,DnaA_N
DYD3_k127_1251405_3	929712.KI912613_gene1122	1.429e-43	173.0	COG0592@1|root,COG0592@2|Bacteria,2GJK3@201174|Actinobacteria,4CP8Y@84995|Rubrobacteria	84995|Rubrobacteria	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	-	-	2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3
DYD3_k127_1251405_0	747365.Thena_0719	1.892e-119	410.0	COG0744@1|root,COG0744@2|Bacteria,1TPM5@1239|Firmicutes,248A4@186801|Clostridia,42EPS@68295|Thermoanaerobacterales	186801|Clostridia	M	PFAM glycosyl transferase, family 51	-	-	2.4.1.129,3.4.16.4	ko:K05366,ko:K21464	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly,Transpeptidase
DYD3_k127_1251405_4	1118054.CAGW01000020_gene4224	3.011e-26	114.0	COG0817@1|root,COG0817@2|Bacteria,1V3N9@1239|Firmicutes,4HGM3@91061|Bacilli,26SYI@186822|Paenibacillaceae	91061|Bacilli	L	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	ruvC	-	3.1.22.4	ko:K01159	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvC
DYD3_k127_1268745_0	1415780.JPOG01000001_gene1235	3.718e-24	104.0	COG0558@1|root,COG0558@2|Bacteria,1RCZ7@1224|Proteobacteria,1S465@1236|Gammaproteobacteria,1X300@135614|Xanthomonadales	135614|Xanthomonadales	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pgsA	-	2.7.8.5	ko:K00995	ko00564,ko01100,map00564,map01100	-	R01801	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
DYD3_k127_1296814_2	1041930.Mtc_0053	4.064e-08	62.0	COG2881@1|root,arCOG02054@2157|Archaea	2157|Archaea	S	protein conserved in archaea	-	-	-	-	-	-	-	-	-	-	-	-	Yip1
DYD3_k127_1296814_0	485913.Krac_0908	7.293e-75	266.0	COG4805@1|root,COG4805@2|Bacteria,2G8D3@200795|Chloroflexi	200795|Chloroflexi	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1296814_3	1123257.AUFV01000018_gene3691	2.905e-05	52.0	2DSM3@1|root,33GM1@2|Bacteria,1NPHW@1224|Proteobacteria	1224|Proteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_1296814_4	258533.BN977_06088	0.0009642	46.0	COG2329@1|root,COG2329@2|Bacteria,2I4P2@201174|Actinobacteria,23FCE@1762|Mycobacteriaceae	201174|Actinobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_1296814_1	479431.Namu_3720	3.148e-11	69.0	COG3832@1|root,COG3832@2|Bacteria,2IN0A@201174|Actinobacteria,4EVV5@85013|Frankiales	201174|Actinobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_1312680_9	1322246.BN4_10622	1.003e-05	54.0	COG0640@1|root,COG0640@2|Bacteria,1ND9A@1224|Proteobacteria	1224|Proteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1312680_2	190486.XAC1912	2.208e-53	198.0	COG0515@1|root,COG0515@2|Bacteria	190486.XAC1912|-	KLT	protein kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1312680_7	1123059.KB823012_gene2180	2.892e-15	79.0	2DQEQ@1|root,336DG@2|Bacteria,1NI38@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1312680_4	55601.VANGNB10_cI0379	5.74e-29	117.0	2BF3R@1|root,328VV@2|Bacteria,1QMIJ@1224|Proteobacteria,1TJTZ@1236|Gammaproteobacteria,1Y1P8@135623|Vibrionales	135623|Vibrionales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1312680_5	298386.PBPRA1882	4.507e-28	119.0	2C58V@1|root,33I4Q@2|Bacteria,1NMRS@1224|Proteobacteria,1SI1A@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	LRAT
DYD3_k127_1312680_6	348824.LPU83_pLPU83a_0050	1.626e-18	85.0	2AD6V@1|root,312VR@2|Bacteria,1PRAR@1224|Proteobacteria,2V3K7@28211|Alphaproteobacteria,4BKRA@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1312680_10	1123314.AUIO01000003_gene1192	9.212e-05	50.0	COG1396@1|root,COG2932@1|root,COG1396@2|Bacteria,COG2932@2|Bacteria,1VAT3@1239|Firmicutes	1239|Firmicutes	K	Peptidase S24-like	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,Peptidase_S24
DYD3_k127_1312680_3	477184.KYC_25138	6.817e-32	142.0	COG2885@1|root,COG2885@2|Bacteria,1QVSX@1224|Proteobacteria,2VW05@28216|Betaproteobacteria	28216|Betaproteobacteria	M	Domain of unknown function (DUF4157)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4157,OmpA
DYD3_k127_1312680_0	330214.NIDE3627	3.735e-135	440.0	COG4335@1|root,COG4335@2|Bacteria	2|Bacteria	L	DNA alkylation repair	yhaZ	-	-	-	-	-	-	-	-	-	-	-	DNA_alkylation
DYD3_k127_1312680_8	1121921.KB898706_gene2446	6.143e-07	52.0	2E4WD@1|root,32ZQH@2|Bacteria,1N9KS@1224|Proteobacteria,1SDP4@1236|Gammaproteobacteria,2PNWQ@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1355994_2	1047013.AQSP01000060_gene2071	8.217e-09	56.0	COG3152@1|root,COG3152@2|Bacteria	2|Bacteria	L	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF805
DYD3_k127_1355994_0	1499967.BAYZ01000110_gene3008	8.748e-53	201.0	COG2801@1|root,COG2801@2|Bacteria	2|Bacteria	L	transposition	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_23,rve,rve_3
DYD3_k127_1355994_1	357804.Ping_2305	1.046e-13	78.0	COG4271@1|root,COG4271@2|Bacteria,1RHKG@1224|Proteobacteria,1S6HK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	nucleotide-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	TIR-like
DYD3_k127_1359307_1	1122165.AUHS01000042_gene445	6.943e-25	104.0	COG0222@1|root,COG0222@2|Bacteria,1RGU4@1224|Proteobacteria,1S5V7@1236|Gammaproteobacteria,1JEGD@118969|Legionellales	118969|Legionellales	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	rplL	-	-	ko:K02935	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L12,Ribosomal_L12_N
DYD3_k127_1359307_0	765914.ThisiDRAFT_0950	1.731e-74	254.0	COG0085@1|root,COG0085@2|Bacteria,1MUC4@1224|Proteobacteria,1RMK0@1236|Gammaproteobacteria,1WX4P@135613|Chromatiales	135613|Chromatiales	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoB	-	2.7.7.6	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
DYD3_k127_1361876_1	714943.Mucpa_4701	6.914e-12	69.0	COG2963@1|root,COG2963@2|Bacteria,4NXP9@976|Bacteroidetes	976|Bacteroidetes	L	Transposase is3 is911 family protein	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD3_k127_1361876_0	504472.Slin_3686	1.778e-79	277.0	COG2801@1|root,COG2801@2|Bacteria,4NF3Q@976|Bacteroidetes,47MKZ@768503|Cytophagia	976|Bacteroidetes	L	PFAM Integrase catalytic region	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve
DYD3_k127_1404402_31	56780.SYN_03368	7.729e-05	48.0	COG1601@1|root,COG1601@2|Bacteria	2|Bacteria	J	translation initiation factor activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_8	381666.H16_A1243	9.225e-40	161.0	COG0675@1|root,COG0675@2|Bacteria,1R612@1224|Proteobacteria,2VNQJ@28216|Betaproteobacteria,1K3D4@119060|Burkholderiaceae	28216|Betaproteobacteria	L	transposase, IS891 IS1136 IS1341 family	-	-	-	ko:K07496	-	-	-	-	ko00000	-	-	-	OrfB_IS605,OrfB_Zn_ribbon
DYD3_k127_1404402_15	1235800.C819_02251	3.46e-25	110.0	2DZY9@1|root,32VN1@2|Bacteria,1VE0V@1239|Firmicutes,24P7G@186801|Clostridia	186801|Clostridia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_17	640512.BC1003_6100	3.783e-16	82.0	COG1396@1|root,COG1396@2|Bacteria,1N6TH@1224|Proteobacteria,2VTHK@28216|Betaproteobacteria,1KARZ@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Helix-turn-helix domain	sinR	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
DYD3_k127_1404402_24	1121272.KB903293_gene7191	4.643e-07	60.0	28ZFJ@1|root,2ZM73@2|Bacteria,2GR4K@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_5	1437882.AZRU01000008_gene2925	2.089e-61	223.0	28JU3@1|root,2Z9J6@2|Bacteria,1RAHT@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_7	1218075.BAYA01000003_gene606	1.926e-41	159.0	291EF@1|root,2ZP1A@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_13	257310.BB2205	5.656e-30	126.0	COG2197@1|root,COG2197@2|Bacteria,1NA3X@1224|Proteobacteria,2VWX0@28216|Betaproteobacteria	28216|Betaproteobacteria	KT	phage-related functions and prophages	-	-	-	-	-	-	-	-	-	-	-	-	HNH_3
DYD3_k127_1404402_11	1218075.BAYA01000003_gene605	1.18e-30	130.0	293JS@1|root,2ZR1S@2|Bacteria,1PAGJ@1224|Proteobacteria,2W5XI@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_14	272630.MexAM1_META1p3950	3.918e-27	116.0	COG2197@1|root,COG2197@2|Bacteria,1NA3X@1224|Proteobacteria,2UHEF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	HNH_3
DYD3_k127_1404402_9	342610.Patl_0148	4.483e-38	147.0	COG0629@1|root,COG0629@2|Bacteria,1RCWT@1224|Proteobacteria,1S3WP@1236|Gammaproteobacteria,2PZNQ@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	L	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	ssb	GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0034645,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363,GO:1901576	-	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	-	-	-	ko00000,ko00001,ko03029,ko03032,ko03400	-	-	-	SSB
DYD3_k127_1404402_6	296587.XP_002508809.1	1.653e-41	156.0	COG0219@1|root,2S173@2759|Eukaryota	2759|Eukaryota	J	SpoU rRNA Methylase family	-	-	-	-	-	-	-	-	-	-	-	-	SpoU_methylase
DYD3_k127_1404402_21	1121441.AUCX01000014_gene507	3.717e-08	66.0	COG5563@1|root,COG5563@2|Bacteria,1Q0JE@1224|Proteobacteria,430IH@68525|delta/epsilon subdivisions,2X0GF@28221|Deltaproteobacteria,2MD65@213115|Desulfovibrionales	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_0	1304275.C41B8_05313	2.266e-133	484.0	COG0454@1|root,COG1040@1|root,COG0456@2|Bacteria,COG1040@2|Bacteria,1R2FE@1224|Proteobacteria,1T5PV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_16	1380386.JIAW01000003_gene536	3.122e-16	96.0	COG0584@1|root,COG1426@1|root,COG1511@1|root,COG3064@1|root,COG3209@1|root,COG4099@1|root,COG5651@1|root,COG0584@2|Bacteria,COG1426@2|Bacteria,COG1511@2|Bacteria,COG3064@2|Bacteria,COG3209@2|Bacteria,COG4099@2|Bacteria,COG5651@2|Bacteria,2GMMS@201174|Actinobacteria,237SJ@1762|Mycobacteriaceae	201174|Actinobacteria	CMN	Papain fold toxin 1, glutamine deamidase	glpQ	-	3.1.4.46	ko:K01126	ko00564,map00564	-	R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000	-	-	-	GDPD
DYD3_k127_1404402_22	1046714.AMRX01000006_gene3176	8.51e-08	61.0	2C6CG@1|root,32RH3@2|Bacteria,1RKN5@1224|Proteobacteria,1S8JE@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_4	1415780.JPOG01000001_gene1751	6.837e-73	272.0	291GM@1|root,2ZP3A@2|Bacteria,1RD1E@1224|Proteobacteria,1S4X6@1236|Gammaproteobacteria,1X9SN@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_33	688245.CtCNB1_2642	0.000297	51.0	2DT4R@1|root,33IPZ@2|Bacteria,1NIT6@1224|Proteobacteria,2VYMT@28216|Betaproteobacteria,4AIU0@80864|Comamonadaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_12	314275.MADE_1014590	2.548e-30	128.0	2CABR@1|root,32TG1@2|Bacteria,1N041@1224|Proteobacteria,1S4Q8@1236|Gammaproteobacteria,46BGC@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_3	1215092.PA6_009_00300	7.751e-93	314.0	28JC4@1|root,2Z96S@2|Bacteria,1RI8W@1224|Proteobacteria,1S6FI@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	P22 coat protein-protein 5 domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_2	1215092.PA6_009_00330	3.663e-122	417.0	28P6A@1|root,2ZC10@2|Bacteria,1RBZE@1224|Proteobacteria,1RRNS@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_1	716544.wcw_0671	1.001e-131	436.0	COG4626@1|root,COG4626@2|Bacteria	2|Bacteria	S	Terminase	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_1
DYD3_k127_1404402_19	1217710.F969_02528	3.49e-10	65.0	296XV@1|root,2ZU6I@2|Bacteria,1P5NI@1224|Proteobacteria,1TMK8@1236|Gammaproteobacteria,3NNSJ@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1404402_27	1122962.AULH01000018_gene333	1.948e-06	58.0	COG4733@1|root,COG4733@2|Bacteria,1MXXZ@1224|Proteobacteria,2TV2W@28211|Alphaproteobacteria,36XJ8@31993|Methylocystaceae	28211|Alphaproteobacteria	S	COG4733 Phage-related protein, tail component	-	-	-	-	-	-	-	-	-	-	-	-	Phage-tail_3
DYD3_k127_1404524_0	1405.DJ92_4674	4.364e-59	206.0	28H95@1|root,2Z7KY@2|Bacteria,1TQTR@1239|Firmicutes,4HB82@91061|Bacilli,1ZDT7@1386|Bacillus	91061|Bacilli	S	Protein of unknown function (DUF4256)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4256
DYD3_k127_1404524_1	1121904.ARBP01000018_gene2665	1.292e-31	128.0	COG3631@1|root,COG3631@2|Bacteria,4NVWJ@976|Bacteroidetes,47WCU@768503|Cytophagia	976|Bacteroidetes	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_1404524_2	313628.LNTAR_21640	4.751e-07	54.0	2EUSR@1|root,33N8A@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1416115_1	713586.KB900536_gene1357	5.142e-176	563.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,1RNV0@1236|Gammaproteobacteria,1WWAB@135613|Chromatiales	135613|Chromatiales	U	Type II secretion system	-	-	-	ko:K02653	-	-	-	-	ko00000,ko02035,ko02044	3.A.15.2	-	-	T2SSF
DYD3_k127_1416115_0	314278.NB231_05511	8.421e-232	730.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,1RMBS@1236|Gammaproteobacteria,1WXAR@135613|Chromatiales	135613|Chromatiales	NU	TIGRFAM type IV-A pilus assembly ATPase PilB	-	-	-	ko:K02652	-	-	-	-	ko00000,ko02035,ko02044	3.A.15.2	-	-	T2SSE,T2SSE_N
DYD3_k127_1416115_6	999411.HMPREF1092_00358	3.639e-81	284.0	COG2327@1|root,COG2327@2|Bacteria	2|Bacteria	S	slime layer polysaccharide biosynthetic process	wcaK	-	-	ko:K16710	-	-	-	-	ko00000	-	-	iECSF_1327.ECSF_1934,iSBO_1134.SBO_0872	PS_pyruv_trans
DYD3_k127_1416115_11	927677.ALVU02000001_gene3324	6.916e-30	125.0	COG3774@1|root,COG3774@2|Bacteria,1GGGF@1117|Cyanobacteria	1117|Cyanobacteria	M	pathogenesis	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1416115_4	1112274.KI911560_gene2578	8.727e-97	325.0	COG0500@1|root,COG0500@2|Bacteria	2|Bacteria	Q	methyltransferase activity	bioC	-	2.1.1.187,2.1.1.197	ko:K00563,ko:K02169	ko00780,ko01100,map00780,map01100	M00572	R07233,R09543	RC00003,RC00460	ko00000,ko00001,ko00002,ko01000,ko03009	-	-	-	Methyltransf_11,Methyltransf_23,Methyltransf_25,Methyltransf_31
DYD3_k127_1416115_2	631362.Thi970DRAFT_01502	1.681e-130	432.0	COG2244@1|root,COG2244@2|Bacteria,1R9I0@1224|Proteobacteria,1RP3V@1236|Gammaproteobacteria,1WYZU@135613|Chromatiales	135613|Chromatiales	S	PFAM Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt_3,Polysacc_synt_C
DYD3_k127_1416115_5	118161.KB235922_gene1332	1.397e-94	316.0	COG0500@1|root,COG2226@2|Bacteria,1G6GB@1117|Cyanobacteria	1117|Cyanobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_1416115_3	391612.CY0110_20760	5.83e-98	332.0	COG0438@1|root,COG0438@2|Bacteria,1G2T9@1117|Cyanobacteria	1117|Cyanobacteria	M	glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_1416115_7	757424.Hsero_2006	2.656e-61	221.0	COG0463@1|root,COG0463@2|Bacteria	2|Bacteria	M	Glycosyl transferase, family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1416115_8	1120963.KB894492_gene1695	3.169e-59	218.0	COG1215@1|root,COG1215@2|Bacteria,1QVAX@1224|Proteobacteria,1T3H7@1236|Gammaproteobacteria,2Q5D3@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	M	Glycosyltransferase like family 2	-	-	2.4.1.122	ko:K21366	-	-	-	-	ko00000,ko01000,ko01003,ko01005	-	GT2	-	Glycos_transf_2
DYD3_k127_1416115_10	1203611.KB894550_gene1012	3.151e-45	176.0	COG1215@1|root,COG1215@2|Bacteria,4NN0X@976|Bacteroidetes,2G05B@200643|Bacteroidia	976|Bacteroidetes	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1416115_9	235909.GK3313	4.641e-49	181.0	COG1216@1|root,COG1216@2|Bacteria,1V9HI@1239|Firmicutes	1239|Firmicutes	S	Involved in cell wall biogenesis	exoM	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1471113_3	1163409.UUA_13620	3.724e-26	111.0	COG0072@1|root,COG0072@2|Bacteria,1MWKS@1224|Proteobacteria,1RMIH@1236|Gammaproteobacteria,1X313@135614|Xanthomonadales	135614|Xanthomonadales	J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	pheT	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	B3_4,B5,FDX-ACB,tRNA_bind
DYD3_k127_1471113_2	318161.Sden_1604	4.083e-42	156.0	COG0776@1|root,COG0776@2|Bacteria,1RH5Z@1224|Proteobacteria,1S61Z@1236|Gammaproteobacteria,2QC5B@267890|Shewanellaceae	1236|Gammaproteobacteria	K	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	himA	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141	-	ko:K04764	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_1471113_0	391615.ABSJ01000059_gene2177	1.317e-58	204.0	COG0789@1|root,COG0789@2|Bacteria,1RGYB@1224|Proteobacteria,1S6Y1@1236|Gammaproteobacteria,1J6ER@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional	VL23_01195	-	-	-	-	-	-	-	-	-	-	-	MerR_1
DYD3_k127_1471113_1	2340.JV46_02630	2.814e-45	171.0	COG4566@1|root,COG4566@2|Bacteria,1N6WR@1224|Proteobacteria,1S0TV@1236|Gammaproteobacteria,1J64K@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_1536345_0	935567.JAES01000019_gene1038	1.763e-21	100.0	2B3X8@1|root,31WM6@2|Bacteria,1RFUV@1224|Proteobacteria,1RNAH@1236|Gammaproteobacteria,1X5HH@135614|Xanthomonadales	135614|Xanthomonadales	S	Protein of unknown function (DUF3999)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3999
DYD3_k127_1536345_1	1136163.M565_ctg1P1053	3.145e-09	63.0	2A4FN@1|root,30T1M@2|Bacteria,1PCNI@1224|Proteobacteria,1TJ7Q@1236|Gammaproteobacteria,1Y0RW@135623|Vibrionales	135623|Vibrionales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1536345_3	1121899.Q764_14130	2.294e-06	56.0	296BI@1|root,2ZTMB@2|Bacteria,4P7AX@976|Bacteroidetes,1IB60@117743|Flavobacteriia	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1536345_4	247633.GP2143_02679	0.0003276	44.0	28W48@1|root,2ZI53@2|Bacteria,1P62A@1224|Proteobacteria,1ST40@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1552298_1	1286631.X805_21360	4.061e-05	51.0	COG1051@1|root,COG1051@2|Bacteria,1N03W@1224|Proteobacteria,2VRC0@28216|Betaproteobacteria,1KKSX@119065|unclassified Burkholderiales	28216|Betaproteobacteria	F	Belongs to the Nudix hydrolase family. NudJ subfamily	nudJ	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_1552298_0	375451.RD1_2687	6.137e-28	122.0	COG2114@1|root,COG2114@2|Bacteria,1R4VB@1224|Proteobacteria,2TRX8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
DYD3_k127_1574393_5	1122194.AUHU01000005_gene872	1.18e-45	166.0	COG0642@1|root,COG2205@2|Bacteria,1QV1H@1224|Proteobacteria,1T4NM@1236|Gammaproteobacteria,467MQ@72275|Alteromonadaceae	1236|Gammaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
DYD3_k127_1574393_16	1123355.JHYO01000008_gene2682	6.466e-07	55.0	COG1366@1|root,COG1366@2|Bacteria,1MZE8@1224|Proteobacteria,2UBXI@28211|Alphaproteobacteria,370XA@31993|Methylocystaceae	28211|Alphaproteobacteria	T	STAS domain	rsbV	-	-	ko:K04749	-	-	-	-	ko00000,ko03021	-	-	-	STAS,STAS_2
DYD3_k127_1574393_10	1121921.KB898706_gene3389	2.917e-25	122.0	COG1807@1|root,COG1807@2|Bacteria,1N5QJ@1224|Proteobacteria,1SM4K@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1574393_13	685778.AORL01000010_gene3148	3.911e-10	67.0	2D5UT@1|root,32R54@2|Bacteria,1MYAG@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1574393_8	1304275.C41B8_09441	2.247e-36	150.0	COG0392@1|root,COG0392@2|Bacteria,1R4IS@1224|Proteobacteria,1RYQY@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	integral membrane protein	-	-	-	ko:K07027	-	-	-	-	ko00000,ko02000	4.D.2	-	-	LPG_synthase_TM
DYD3_k127_1574393_7	1123514.KB905899_gene445	6.46e-44	163.0	COG1963@1|root,COG1963@2|Bacteria,1RKAF@1224|Proteobacteria,1S783@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Divergent PAP2 family	-	-	-	ko:K09775	-	-	-	-	ko00000	-	-	-	DUF212
DYD3_k127_1574393_3	312153.Pnuc_0329	1.291e-98	330.0	COG0382@1|root,COG0382@2|Bacteria,1MXCM@1224|Proteobacteria,2VKY4@28216|Betaproteobacteria,1K0JV@119060|Burkholderiaceae	28216|Betaproteobacteria	H	PFAM UbiA prenyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	HAD,UbiA
DYD3_k127_1574393_14	1504672.669782759	1.519e-09	62.0	COG2801@1|root,COG2801@2|Bacteria,1PBHA@1224|Proteobacteria,2VKPT@28216|Betaproteobacteria,4ABS0@80864|Comamonadaceae	28216|Betaproteobacteria	L	PFAM Integrase catalytic region	-	-	-	-	-	-	-	-	-	-	-	-	HTH_32,rve
DYD3_k127_1574393_12	322710.Avin_16540	5.317e-12	68.0	COG2963@1|root,COG2963@2|Bacteria,1RHBZ@1224|Proteobacteria,1S69Y@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	Transposase	-	GO:0005575,GO:0005623,GO:0006139,GO:0006259,GO:0006310,GO:0006313,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009279,GO:0009405,GO:0009987,GO:0016020,GO:0019867,GO:0030260,GO:0030312,GO:0030313,GO:0031975,GO:0032196,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044409,GO:0044419,GO:0044462,GO:0044464,GO:0046483,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0071704,GO:0071944,GO:0090304,GO:1901360	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD3_k127_1574393_4	1515746.HR45_07330	8.536e-57	204.0	COG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,1RR4F@1236|Gammaproteobacteria,2QEPK@267890|Shewanellaceae	1236|Gammaproteobacteria	L	PFAM Integrase, catalytic region	insF	GO:0008150,GO:0009987,GO:0032196	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve,rve_2
DYD3_k127_1574393_0	1173028.ANKO01000193_gene5880	1.148e-126	422.0	COG2303@1|root,COG2303@2|Bacteria,1G3V7@1117|Cyanobacteria,1H9T9@1150|Oscillatoriales	1117|Cyanobacteria	E	GMC oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N,NAD_binding_8
DYD3_k127_1574393_2	1173028.ANKO01000193_gene5879	4.36e-112	371.0	COG0451@1|root,COG0451@2|Bacteria,1G3T6@1117|Cyanobacteria,1HA43@1150|Oscillatoriales	1117|Cyanobacteria	M	Male sterility protein	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
DYD3_k127_1574393_1	1313172.YM304_25230	2.824e-124	407.0	COG0451@1|root,COG0451@2|Bacteria,2GMHH@201174|Actinobacteria	201174|Actinobacteria	M	3-beta hydroxysteroid dehydrogenase isomerase	-	-	-	ko:K21793	ko00333,ko01130,map00333,map01130	M00838	R11663,R11666	-	ko00000,ko00001,ko00002	-	-	-	Epimerase
DYD3_k127_1574393_11	313612.L8106_07049	3.937e-18	89.0	COG2076@1|root,COG2076@2|Bacteria,1G83V@1117|Cyanobacteria,1HCPB@1150|Oscillatoriales	1117|Cyanobacteria	U	Small Multidrug Resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	Multi_Drug_Res
DYD3_k127_1574393_6	498211.CJA_0015	1.286e-44	173.0	COG1305@1|root,COG1305@2|Bacteria,1NEY1@1224|Proteobacteria,1SF7F@1236|Gammaproteobacteria,1FHZ6@10|Cellvibrio	1236|Gammaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Transglut_core
DYD3_k127_1574393_17	1121935.AQXX01000073_gene284	0.0002612	52.0	COG0607@1|root,COG0607@2|Bacteria,1QTJP@1224|Proteobacteria,1SWD7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS	-	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
DYD3_k127_1574393_15	1121286.AUMT01000018_gene1909	9.094e-09	61.0	COG5492@1|root,COG5492@2|Bacteria,4NH1K@976|Bacteroidetes,1HZUI@117743|Flavobacteriia,3ZP4P@59732|Chryseobacterium	976|Bacteroidetes	N	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1580461_1	754027.HMPREF9554_02132	2.806e-08	58.0	COG2801@1|root,COG2801@2|Bacteria,2J6UX@203691|Spirochaetes	203691|Spirochaetes	L	hmm pf00665	-	-	-	-	-	-	-	-	-	-	-	-	rve
DYD3_k127_1580461_0	1541065.JRFE01000073_gene3320	1.729e-129	427.0	COG3464@1|root,COG3464@2|Bacteria,1G42D@1117|Cyanobacteria,3VMW4@52604|Pleurocapsales	1117|Cyanobacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
DYD3_k127_1604970_1	1385517.N800_08895	8.131e-16	77.0	COG3812@1|root,COG3812@2|Bacteria,1RGUV@1224|Proteobacteria,1S5RA@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Domain of unknown function (DUF1993)	-	-	-	ko:K09983	-	-	-	-	ko00000	-	-	-	DUF1993
DYD3_k127_1604970_0	1323663.AROI01000035_gene1340	1.81e-56	201.0	COG3428@1|root,COG3428@2|Bacteria,1N9PB@1224|Proteobacteria,1SBM0@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Bacterial PH domain	-	-	-	-	-	-	-	-	-	-	-	-	bPH_2
DYD3_k127_1605282_1	172088.AUGA01000043_gene4885	9.854e-10	66.0	2E849@1|root,332I1@2|Bacteria,1NIKS@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	LAGLIDADG_3
DYD3_k127_1605282_2	1449126.JQKL01000046_gene2076	1.647e-06	58.0	28NGF@1|root,2ZBII@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_167407_6	156578.ATW7_14241	0.0008668	42.0	COG2963@1|root,COG2963@2|Bacteria,1N1CG@1224|Proteobacteria,1SAIC@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	Transposase	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD3_k127_167407_4	313595.P700755_001150	6.745e-07	57.0	2FDPX@1|root,345R2@2|Bacteria,4P5XQ@976|Bacteroidetes	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_167407_1	421072.IO89_16515	1.017e-34	144.0	2E47H@1|root,32Z3D@2|Bacteria,4NRW3@976|Bacteroidetes,1I4I5@117743|Flavobacteriia	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_167407_3	1458275.AZ34_17435	7.783e-15	83.0	2EFW4@1|root,339NC@2|Bacteria,1P4VM@1224|Proteobacteria,2W51I@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_167407_5	1117315.AHCA01000005_gene1293	2.251e-05	52.0	2EMQC@1|root,33FCV@2|Bacteria,1NZUP@1224|Proteobacteria,1SRZ2@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_167407_2	1230476.C207_04080	4.151e-17	90.0	2FJJ1@1|root,34B8H@2|Bacteria,1NQ4Z@1224|Proteobacteria,2UM2K@28211|Alphaproteobacteria,3K588@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_167407_0	1045855.DSC_10020	1.214e-80	274.0	28IYH@1|root,2Z8W7@2|Bacteria,1PDS3@1224|Proteobacteria,1TJ93@1236|Gammaproteobacteria,1XBMB@135614|Xanthomonadales	135614|Xanthomonadales	S	Protein of unknown function (Hypoth_ymh)	-	-	-	-	-	-	-	-	-	-	-	-	Hypoth_Ymh
DYD3_k127_1679825_0	383372.Rcas_3859	6.668e-180	568.0	COG3385@1|root,COG3385@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5,DDE_Tnp_1
DYD3_k127_1679825_2	1120973.AQXL01000059_gene3201	1.31e-07	54.0	COG0526@1|root,COG0526@2|Bacteria,1VAPY@1239|Firmicutes,4HJN1@91061|Bacilli,27A30@186823|Alicyclobacillaceae	91061|Bacilli	O	Thioredoxin	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_1679825_1	479434.Sthe_2485	4.666e-21	94.0	COG1225@1|root,COG1225@2|Bacteria,2G95Y@200795|Chloroflexi,27YNE@189775|Thermomicrobia	189775|Thermomicrobia	O	Redoxin	-	-	1.11.1.15	ko:K03564	-	-	-	-	ko00000,ko01000	-	-	-	AhpC-TSA
DYD3_k127_1728557_2	1424334.W822_11945	2.71e-05	53.0	COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2VP1G@28216|Betaproteobacteria,3T3MJ@506|Alcaligenaceae	28216|Betaproteobacteria	P	Rieske [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
DYD3_k127_1728557_0	880073.Calab_3453	1.409e-44	178.0	COG3385@1|root,COG3385@2|Bacteria,2NRDU@2323|unclassified Bacteria	2|Bacteria	L	Transposase DDE domain group 1	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_4
DYD3_k127_1728557_1	272134.KB731325_gene542	7.537e-26	115.0	COG1961@1|root,COG1961@2|Bacteria	2|Bacteria	L	recombinase activity	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_1809997_8	643867.Ftrac_2073	9.399e-64	229.0	COG1327@1|root,COG1327@2|Bacteria,4NHXI@976|Bacteroidetes,47P1Y@768503|Cytophagia	976|Bacteroidetes	K	PFAM ATP cone domain	-	-	-	-	-	-	-	-	-	-	-	-	ATP-cone,Mrr_cat
DYD3_k127_1809997_7	1122244.AUGF01000014_gene2012	1.325e-72	257.0	COG0482@1|root,COG0482@2|Bacteria,1MUT1@1224|Proteobacteria,1RMAK@1236|Gammaproteobacteria,3NJVQ@468|Moraxellaceae	1236|Gammaproteobacteria	J	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	mnmA	GO:0001510,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004808,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016782,GO:0016783,GO:0030488,GO:0032259,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.8.1.13	ko:K00566	ko04122,map04122	-	R08700	RC02313,RC02315	ko00000,ko00001,ko01000,ko03016	-	-	-	tRNA_Me_trans
DYD3_k127_1809997_13	1121430.JMLG01000021_gene1395	3.55e-43	173.0	COG1559@1|root,COG1559@2|Bacteria,1TS48@1239|Firmicutes,2493B@186801|Clostridia,260MF@186807|Peptococcaceae	186801|Clostridia	S	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	mltG	-	-	ko:K07082	-	-	-	-	ko00000	-	-	-	YceG
DYD3_k127_1809997_31	796606.BMMGA3_16765	0.0001262	54.0	COG0433@1|root,COG0433@2|Bacteria,1VBT7@1239|Firmicutes,4HTX5@91061|Bacilli,1ZKHZ@1386|Bacillus	91061|Bacilli	S	COG0433 Predicted ATPase	-	-	-	-	-	-	-	-	-	-	-	-	DUF87
DYD3_k127_1809997_30	42256.RradSPS_0776	1.066e-05	57.0	COG0568@1|root,COG0568@2|Bacteria,2GK3Z@201174|Actinobacteria,4CPPG@84995|Rubrobacteria	84995|Rubrobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	sigA	-	-	ko:K03086	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
DYD3_k127_1809997_2	1382356.JQMP01000004_gene261	6.979e-217	706.0	COG0495@1|root,COG0495@2|Bacteria,2G5MX@200795|Chloroflexi,27XYD@189775|Thermomicrobia	189775|Thermomicrobia	J	Belongs to the class-I aminoacyl-tRNA synthetase family	leuS	-	6.1.1.4	ko:K01869	ko00970,map00970	M00359,M00360	R03657	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Anticodon_1,tRNA-synt_1
DYD3_k127_1809997_29	1121013.P873_09505	3.661e-07	61.0	2AHHX@1|root,317VF@2|Bacteria,1PSA9@1224|Proteobacteria,1T8UZ@1236|Gammaproteobacteria,1XB9T@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1809997_25	395964.KE386496_gene1675	1.23e-15	88.0	29M6H@1|root,3083Y@2|Bacteria,1RJTC@1224|Proteobacteria,2UC3J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1809997_6	926692.AZYG01000047_gene2672	5.927e-110	366.0	COG0012@1|root,COG0012@2|Bacteria,1TPRK@1239|Firmicutes,2482Z@186801|Clostridia,3WA7Z@53433|Halanaerobiales	186801|Clostridia	J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner	ychF	-	-	ko:K06942	-	-	-	-	ko00000,ko03009	-	-	-	MMR_HSR1,YchF-GTPase_C
DYD3_k127_1809997_11	1177154.Y5S_02328	3.514e-45	172.0	COG2249@1|root,COG2249@2|Bacteria,1RA5X@1224|Proteobacteria,1S3UT@1236|Gammaproteobacteria,1XK7N@135619|Oceanospirillales	135619|Oceanospirillales	H	Flavodoxin-like fold	-	-	-	-	-	-	-	-	-	-	-	-	Flavodoxin_2,UbiA
DYD3_k127_1809997_27	331678.Cphamn1_0030	7.4e-11	65.0	COG0355@1|root,COG0355@2|Bacteria	2|Bacteria	C	proton-transporting ATP synthase activity, rotational mechanism	atpC	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600	-	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_DE_N
DYD3_k127_1809997_3	401526.TcarDRAFT_1467	5.425e-198	627.0	COG0055@1|root,COG0055@2|Bacteria,1TPGF@1239|Firmicutes,4H2IA@909932|Negativicutes	909932|Negativicutes	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits	atpD	-	3.6.3.14	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_N
DYD3_k127_1809997_10	643648.Slip_2283	9.812e-53	197.0	COG0224@1|root,COG0224@2|Bacteria,1TPBX@1239|Firmicutes,2486Q@186801|Clostridia,42K9T@68298|Syntrophomonadaceae	186801|Clostridia	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex	atpG	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt
DYD3_k127_1809997_22	195522.BD01_1453	8.669e-20	96.0	COG1986@1|root,arCOG01221@2157|Archaea,2XWMP@28890|Euryarchaeota,2442B@183968|Thermococci	183968|Thermococci	F	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions	-	GO:0003674,GO:0003824,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111	-	-	-	-	-	-	-	-	-	-	NTPase_I-T
DYD3_k127_1809997_4	1051632.TPY_0810	1.734e-172	555.0	COG0056@1|root,COG0056@2|Bacteria,1TNZ8@1239|Firmicutes,248IY@186801|Clostridia,3WCQ1@538999|Clostridiales incertae sedis	186801|Clostridia	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit	atpA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	3.6.3.14	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
DYD3_k127_1809997_28	1280696.ATVY01000021_gene1839	8.388e-08	60.0	COG0711@1|root,COG0711@2|Bacteria,1VB85@1239|Firmicutes,24RWR@186801|Clostridia,4C26C@830|Butyrivibrio	186801|Clostridia	C	ATP synthase B/B' CF(0)	atpF	-	-	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	iHN637.CLJU_RS01170	ATP-synt_B
DYD3_k127_1809997_24	926550.CLDAP_05100	7.262e-18	85.0	COG0636@1|root,COG0636@2|Bacteria,2G72D@200795|Chloroflexi	200795|Chloroflexi	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpE	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600	-	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_C
DYD3_k127_1809997_14	383372.Rcas_1271	1.032e-39	158.0	COG0356@1|root,COG0356@2|Bacteria,2G6NF@200795|Chloroflexi,376W7@32061|Chloroflexia	32061|Chloroflexia	C	it plays a direct role in the translocation of protons across the membrane	atpB	-	-	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko03110	3.A.2.1	-	-	ATP-synt_A
DYD3_k127_1809997_26	485913.Krac_3212	5.155e-11	66.0	2DEPM@1|root,2ZNRD@2|Bacteria,2G9FN@200795|Chloroflexi	200795|Chloroflexi	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1809997_21	172045.KS04_10960	1.596e-29	123.0	28PI4@1|root,2ZC8A@2|Bacteria,4NMD1@976|Bacteroidetes,1I1WC@117743|Flavobacteriia,34S2C@308865|Elizabethkingia	976|Bacteroidetes	S	Protein of unknown function (DUF1003)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1003
DYD3_k127_1809997_17	483215.BACFIN_07926	6.876e-38	158.0	COG2843@1|root,COG2843@2|Bacteria,4NI9W@976|Bacteroidetes,2G384@200643|Bacteroidia,4AWBI@815|Bacteroidaceae	976|Bacteroidetes	M	Bacterial capsule synthesis protein PGA_cap	-	-	-	ko:K07282	-	-	-	-	ko00000	-	-	-	PGA_cap
DYD3_k127_1809997_12	32507.XP_006798258.1	8.97e-44	165.0	COG0494@1|root,2S254@2759|Eukaryota,39ZYW@33154|Opisthokonta,3BPBN@33208|Metazoa,3D6IS@33213|Bilateria,47Z58@7711|Chordata,498HZ@7742|Vertebrata,4A2F5@7898|Actinopterygii	33208|Metazoa	G	Nudix (nucleoside diphosphate linked moiety X)-type motif 1	NUDT1	GO:0000003,GO:0001669,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006259,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0007154,GO:0007275,GO:0007548,GO:0007568,GO:0008150,GO:0008152,GO:0008406,GO:0008413,GO:0008584,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0012505,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022414,GO:0030141,GO:0030515,GO:0031090,GO:0031410,GO:0031668,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0035539,GO:0036219,GO:0042221,GO:0042262,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044713,GO:0044714,GO:0045137,GO:0046060,GO:0046061,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046546,GO:0046661,GO:0046686,GO:0046700,GO:0047429,GO:0047693,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0055086,GO:0061458,GO:0070013,GO:0071496,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0090304,GO:0097159,GO:0097223,GO:0097708,GO:0099503,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576	3.6.1.55,3.6.1.56	ko:K03574,ko:K17816	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
DYD3_k127_1809997_16	935948.KE386494_gene898	1.461e-38	156.0	COG0265@1|root,COG0265@2|Bacteria,1TRM8@1239|Firmicutes,247M5@186801|Clostridia,42EX9@68295|Thermoanaerobacterales	186801|Clostridia	O	smart pdz dhr glgf	htrA	-	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ_2,Trypsin_2
DYD3_k127_1809997_20	314278.NB231_07402	3.768e-31	126.0	COG2154@1|root,COG2154@2|Bacteria,1RH99@1224|Proteobacteria,1S5YX@1236|Gammaproteobacteria,1WYQX@135613|Chromatiales	135613|Chromatiales	H	pterin-4-alpha-carbinolamine dehydratase	-	-	4.2.1.96	ko:K01724	ko00790,map00790	-	R04734	RC01208	ko00000,ko00001,ko01000,ko04147	-	-	-	Pterin_4a
DYD3_k127_1809997_9	1121405.dsmv_3673	1.547e-56	209.0	COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,42NF2@68525|delta/epsilon subdivisions,2WJ7Q@28221|Deltaproteobacteria,2MI9U@213118|Desulfobacterales	28221|Deltaproteobacteria	M	Belongs to the D-alanine--D-alanine ligase family	ddl	-	6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	-	R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Dala_Dala_lig_N
DYD3_k127_1809997_18	584708.Apau_1353	1.994e-33	146.0	COG0322@1|root,COG0322@2|Bacteria,3TA9X@508458|Synergistetes	508458|Synergistetes	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision	uvrC	-	-	ko:K03703	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N
DYD3_k127_1809997_0	420246.GTNG_3035	2.854e-294	927.0	COG0178@1|root,COG0178@2|Bacteria,1TPIJ@1239|Firmicutes,4HAW9@91061|Bacilli,1WF5U@129337|Geobacillus	91061|Bacilli	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate	uvrA	-	-	ko:K03701	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	ABC_tran
DYD3_k127_1809997_23	1410612.JNKO01000002_gene2319	6.154e-18	89.0	COG0745@1|root,COG0745@2|Bacteria,1TPZ0@1239|Firmicutes,249IC@186801|Clostridia,2PS0Y@265975|Oribacterium	186801|Clostridia	T	Transcriptional regulatory protein, C terminal	srrA_2	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1809997_15	926554.KI912633_gene4039	5.671e-39	159.0	COG5002@1|root,COG5002@2|Bacteria,1WNHC@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	GAF_2,HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9,Response_reg
DYD3_k127_1809997_1	1303518.CCALI_00921	2.448e-226	721.0	COG0556@1|root,COG0556@2|Bacteria	2|Bacteria	L	nucleotide-excision repair	uvrB	-	-	ko:K03702,ko:K08999	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	Helicase_C,ResIII,UVR,UvrB
DYD3_k127_1809997_19	1464048.JNZS01000004_gene1479	3.391e-33	137.0	COG1434@1|root,COG1434@2|Bacteria,2IK4D@201174|Actinobacteria,4DDTT@85008|Micromonosporales	201174|Actinobacteria	S	Gram-negative-bacterium-type cell wall biogenesis	-	-	-	-	-	-	-	-	-	-	-	-	DUF218
DYD3_k127_1809997_5	443218.AS9A_0205	2.373e-114	380.0	COG0343@1|root,COG0343@2|Bacteria,2GMWY@201174|Actinobacteria,234BK@1762|Mycobacteriaceae	201174|Actinobacteria	J	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)	tgt	-	2.4.2.29	ko:K00773	-	-	R03789,R10209	RC00063	ko00000,ko01000,ko03016	-	-	-	TGT
DYD3_k127_1816518_0	644283.Micau_4660	1.492e-37	145.0	COG0328@1|root,COG0406@1|root,COG0328@2|Bacteria,COG0406@2|Bacteria,2GJ9R@201174|Actinobacteria,4D95T@85008|Micromonosporales	201174|Actinobacteria	GL	Reverse transcriptase-like	rnhA	GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006401,GO:0006725,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016891,GO:0016893,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0032296,GO:0033013,GO:0033014,GO:0034641,GO:0034655,GO:0042364,GO:0042578,GO:0043170,GO:0043755,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046700,GO:0051186,GO:0051188,GO:0071667,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576	3.1.26.4,3.1.3.73	ko:K02226,ko:K22316	ko00860,ko01100,ko03030,map00860,map01100,map03030	M00122	R04594,R11173	RC00017	ko00000,ko00001,ko00002,ko01000,ko03032	-	-	-	His_Phos_1,RVT_3
DYD3_k127_1816518_2	316274.Haur_3646	4.764e-31	139.0	COG0658@1|root,COG0658@2|Bacteria,2G6G7@200795|Chloroflexi,375B1@32061|Chloroflexia	32061|Chloroflexia	S	PFAM ComEC Rec2-related protein	-	-	-	ko:K02238	-	M00429	-	-	ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2	-	-	Competence,DUF4131
DYD3_k127_1816518_1	552811.Dehly_0410	1.255e-36	146.0	COG0605@1|root,COG0605@2|Bacteria,2G5Q9@200795|Chloroflexi,34D0I@301297|Dehalococcoidia	301297|Dehalococcoidia	C	Iron/manganese superoxide dismutases, C-terminal domain	sod	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C
DYD3_k127_1816583_0	288000.BBta_1402	4.534e-92	307.0	COG3335@1|root,COG3335@2|Bacteria,1MW7X@1224|Proteobacteria,2TTH8@28211|Alphaproteobacteria,3JWD8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3,HTH_32
DYD3_k127_1816583_1	1521187.JPIM01000172_gene3327	8.212e-25	109.0	COG3415@1|root,COG3415@2|Bacteria,2G9BT@200795|Chloroflexi,3778B@32061|Chloroflexia	32061|Chloroflexia	L	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1823130_2	237368.SCABRO_02970	0.0007587	49.0	COG1262@1|root,COG1262@2|Bacteria,2J31V@203682|Planctomycetes	203682|Planctomycetes	S	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase
DYD3_k127_1823130_0	926569.ANT_26050	2.868e-84	293.0	COG5433@1|root,COG5433@2|Bacteria,2G91M@200795|Chloroflexi	200795|Chloroflexi	L	PFAM transposase, IS4 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_assoc
DYD3_k127_1823130_1	926569.ANT_26040	2.799e-66	241.0	COG5433@1|root,COG5433@2|Bacteria,2G91G@200795|Chloroflexi	200795|Chloroflexi	L	DDE_Tnp_1-associated	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_assoc
DYD3_k127_1867816_3	1304275.C41B8_06442	5.46e-06	48.0	COG3440@1|root,COG3440@2|Bacteria,1N4JP@1224|Proteobacteria,1SC80@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	restriction endonuclease	-	-	-	ko:K07454	-	-	-	-	ko00000	-	-	-	HNH_2
DYD3_k127_1867816_0	1028801.RG1141_CH06870	2.032e-35	137.0	COG4679@1|root,COG4679@2|Bacteria,1MZC9@1224|Proteobacteria,2U9FS@28211|Alphaproteobacteria,4BGRU@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Phage derived protein Gp49-like (DUF891)	-	-	-	-	-	-	-	-	-	-	-	-	Gp49
DYD3_k127_1867816_2	264730.PSPPH_A0021	1.391e-20	94.0	COG5606@1|root,COG5606@2|Bacteria,1PQ53@1224|Proteobacteria,1RVP3@1236|Gammaproteobacteria,1ZADQ@136849|Pseudomonas syringae group	1236|Gammaproteobacteria	S	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_37
DYD3_k127_1867816_1	1198114.AciX9_1011	1.55e-23	101.0	COG3440@1|root,COG3440@2|Bacteria	2|Bacteria	V	regulation of methylation-dependent chromatin silencing	hphI	-	-	ko:K07454	-	-	-	-	ko00000	-	-	-	HNH_2
DYD3_k127_1892167_0	1321782.HMPREF1986_00343	1.009e-65	232.0	COG1783@1|root,COG1783@2|Bacteria,1TT85@1239|Firmicutes,24ETQ@186801|Clostridia	186801|Clostridia	S	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6
DYD3_k127_1948913_0	941639.BCO26_2227	1.408e-38	158.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1V41H@1239|Firmicutes,4HH52@91061|Bacilli,1ZHKF@1386|Bacillus	91061|Bacilli	L	DDE superfamily endonuclease	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3,HTH_23,HTH_29,HTH_33
DYD3_k127_1952582_0	713586.KB900536_gene1964	5.494e-28	121.0	COG0705@1|root,COG0705@2|Bacteria,1RJYI@1224|Proteobacteria,1S0FR@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Rhomboid family	-	-	-	-	-	-	-	-	-	-	-	-	Rhomboid
DYD3_k127_1956849_2	266117.Rxyl_1184	4.715e-16	78.0	COG3871@1|root,COG3871@2|Bacteria,2I2TZ@201174|Actinobacteria	201174|Actinobacteria	S	pyridoxamine 5-phosphate	-	-	-	ko:K07005	-	-	-	-	ko00000	-	-	-	Putative_PNPOx
DYD3_k127_1956849_0	102125.Xen7305DRAFT_00028960	8.541e-115	383.0	COG3385@1|root,COG3385@2|Bacteria,1G2NV@1117|Cyanobacteria,3VMET@52604|Pleurocapsales	1117|Cyanobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5,DDE_Tnp_1,DDE_Tnp_2
DYD3_k127_1956849_1	1124983.PFLCHA0_c38700	1.782e-17	84.0	COG2110@1|root,COG2110@2|Bacteria,1NIIH@1224|Proteobacteria,1SIMD@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	phosphatase homologous to the C-terminal domain of histone macroH2A1	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1971444_0	457570.Nther_2078	8.183e-62	229.0	COG3547@1|root,COG3547@2|Bacteria,1V0B6@1239|Firmicutes,248VY@186801|Clostridia	186801|Clostridia	L	Transposase IS116 IS110 IS902	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
DYD3_k127_2002070_1	745411.B3C1_18472	6.42e-57	199.0	COG0346@1|root,COG0346@2|Bacteria,1REFQ@1224|Proteobacteria,1S3NT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2002070_0	1128421.JAGA01000003_gene3331	2.967e-67	231.0	COG3832@1|root,COG3832@2|Bacteria	2|Bacteria	J	glyoxalase III activity	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_2002191_0	745411.B3C1_18472	2.488e-57	201.0	COG0346@1|root,COG0346@2|Bacteria,1REFQ@1224|Proteobacteria,1S3NT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2002191_1	1128421.JAGA01000003_gene3331	2.789e-55	196.0	COG3832@1|root,COG3832@2|Bacteria	2|Bacteria	J	glyoxalase III activity	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_2002191_4	589924.Ferp_0596	0.0002172	51.0	COG0454@1|root,arCOG00826@2157|Archaea,2XXYN@28890|Euryarchaeota,246C2@183980|Archaeoglobi	183980|Archaeoglobi	K	PFAM GCN5-related N-acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_2002191_2	714943.Mucpa_3597	1.928e-49	188.0	COG4099@1|root,COG4099@2|Bacteria,4NFSH@976|Bacteroidetes,1IS3G@117747|Sphingobacteriia	976|Bacteroidetes	S	PFAM phospholipase Carboxylesterase	-	-	-	-	-	-	-	-	-	-	-	-	DLH,Esterase,Peptidase_S9
DYD3_k127_2002191_3	909663.KI867150_gene1516	1.983e-23	100.0	COG3093@1|root,COG3093@2|Bacteria,1N76J@1224|Proteobacteria,42VQB@68525|delta/epsilon subdivisions,2WRF4@28221|Deltaproteobacteria,2MSE5@213462|Syntrophobacterales	28221|Deltaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	ko:K21498	-	-	-	-	ko00000,ko02048	-	-	-	HTH_3
DYD3_k127_2021562_3	255470.cbdbA355	4.873e-41	162.0	COG0030@1|root,COG0030@2|Bacteria,2G6ER@200795|Chloroflexi,34CIF@301297|Dehalococcoidia	301297|Dehalococcoidia	J	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	ksgA	-	2.1.1.182	ko:K02528	-	-	R10716	RC00003,RC03257	ko00000,ko01000,ko03009	-	-	-	RrnaAD
DYD3_k127_2021562_0	1473546.CH76_08730	2.017e-142	474.0	COG0210@1|root,COG0210@2|Bacteria,1TPSU@1239|Firmicutes,4HB12@91061|Bacilli,3IWSZ@400634|Lysinibacillus	91061|Bacilli	L	ATP-dependent DNA helicase	pcrA	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
DYD3_k127_2021562_2	926550.CLDAP_04380	2.763e-41	167.0	COG0739@1|root,COG1388@1|root,COG0739@2|Bacteria,COG1388@2|Bacteria,2G6Q7@200795|Chloroflexi	200795|Chloroflexi	M	Peptidoglycan-binding LysM	-	-	-	-	-	-	-	-	-	-	-	-	LysM,Peptidase_M23,SH3_3
DYD3_k127_2021562_1	1406840.Q763_03460	1.665e-123	413.0	COG0606@1|root,COG0606@2|Bacteria,4NE0G@976|Bacteroidetes,1HXWB@117743|Flavobacteriia,2NSWB@237|Flavobacterium	976|Bacteroidetes	O	magnesium chelatase	comM	-	-	ko:K07391	-	-	-	-	ko00000	-	-	-	ChlI,Mg_chelatase,Mg_chelatase_C
DYD3_k127_2087443_0	627192.SLG_21990	1.408e-08	61.0	2AG43@1|root,3168R@2|Bacteria,1NGSP@1224|Proteobacteria,2UK3Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	-
DYD3_k127_2131046_12	1123274.KB899431_gene3241	0.0001689	46.0	2AU0F@1|root,31JKB@2|Bacteria	2|Bacteria	S	COG NOG14600 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2131046_0	1122244.AUGF01000070_gene943	2.81e-58	202.0	2AU0F@1|root,31JKB@2|Bacteria,1RGGF@1224|Proteobacteria,1S5B2@1236|Gammaproteobacteria,3NN42@468|Moraxellaceae	1236|Gammaproteobacteria	S	COG NOG14600 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2131046_3	471874.PROSTU_00109	1.667e-20	92.0	29XIP@1|root,30J9M@2|Bacteria,1QGXJ@1224|Proteobacteria,1TEDR@1236|Gammaproteobacteria,3ZADK@586|Providencia	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2131046_6	1247024.JRLH01000006_gene2663	4.019e-15	79.0	2B9ZZ@1|root,323DM@2|Bacteria,1MZ6J@1224|Proteobacteria,1S8U2@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	COG NOG15344 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2131046_11	617140.AJZE01000061_gene2940	2.868e-05	47.0	2AWRM@1|root,31NNJ@2|Bacteria,1QKD5@1224|Proteobacteria,1TIGU@1236|Gammaproteobacteria,1XZ3R@135623|Vibrionales	135623|Vibrionales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2131046_4	1132855.KB913035_gene2176	8.376e-18	83.0	2EKPQ@1|root,33EDG@2|Bacteria,1NMRQ@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2131046_5	568703.LGG_00818	1.682e-15	77.0	2DX7X@1|root,32V2Y@2|Bacteria,1VB4V@1239|Firmicutes,4HKWS@91061|Bacilli,3F76M@33958|Lactobacillaceae	91061|Bacilli	S	COG NOG38524 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2131046_2	244582.JQAK01000022_gene652	2.814e-38	144.0	2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2182622_1	1027273.GZ77_01420	4.185e-57	201.0	2DNW1@1|root,32ZFG@2|Bacteria,1NBSM@1224|Proteobacteria,1S8G5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2182622_6	1122182.KB903813_gene2552	2.181e-20	95.0	COG1051@1|root,COG1051@2|Bacteria,2IFB9@201174|Actinobacteria,4DEZY@85008|Micromonosporales	201174|Actinobacteria	F	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_2182622_7	237368.SCABRO_00510	2.585e-20	92.0	2E8Z8@1|root,3338U@2|Bacteria	2|Bacteria	S	Antitoxin Phd_YefM, type II toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_2182622_4	933262.AXAM01000001_gene444	7.114e-35	138.0	COG4113@1|root,COG4113@2|Bacteria,1N169@1224|Proteobacteria	1224|Proteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2182622_5	1230457.C476_06287	2.106e-28	119.0	COG3217@1|root,arCOG04766@2157|Archaea,2Y7HS@28890|Euryarchaeota,241HM@183963|Halobacteria	183963|Halobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	MOSC
DYD3_k127_2182622_0	1123242.JH636435_gene998	4.425e-69	236.0	COG0454@1|root,COG0456@2|Bacteria	2|Bacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,FR47
DYD3_k127_2182622_3	626887.J057_06466	2.022e-40	154.0	2EH3G@1|root,33AVG@2|Bacteria,1NQ4B@1224|Proteobacteria,1SHSX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2186968_0	63737.Npun_F3172	9.077e-34	135.0	COG0300@1|root,COG3321@1|root,COG0300@2|Bacteria,COG3321@2|Bacteria,1FZXE@1117|Cyanobacteria,1HIST@1161|Nostocales	1117|Cyanobacteria	Q	acyl transferase domain	-	-	-	-	-	-	-	-	-	-	-	-	ADH_zinc_N_2,Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,Methyltransf_12,PP-binding,PS-DH,ketoacyl-synt
DYD3_k127_2196325_1	1117318.PRUB_09284	2.158e-13	74.0	2DDP4@1|root,2ZIRZ@2|Bacteria,1NK1H@1224|Proteobacteria,1SI15@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	ko:K03569	-	-	-	-	ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1	-	-	-
DYD3_k127_2196325_0	1454004.AW11_01882	1.981e-89	298.0	2ADTC@1|root,313IZ@2|Bacteria,1RJKU@1224|Proteobacteria,2VSG2@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2197821_2	312309.VF_A0135	9.677e-209	659.0	COG0210@1|root,COG1074@1|root,COG0210@2|Bacteria,COG1074@2|Bacteria,1MWW6@1224|Proteobacteria,1RYRU@1236|Gammaproteobacteria,1XUXW@135623|Vibrionales	135623|Vibrionales	L	Nuclease-related domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_19,NERD,UvrD_C
DYD3_k127_2197821_5	216591.BCAL0413	5.884e-67	244.0	2C44H@1|root,32VSJ@2|Bacteria,1NIUA@1224|Proteobacteria,2W6NX@28216|Betaproteobacteria,1KC5P@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2197821_6	330214.NIDE3840	1.083e-42	162.0	2DGUS@1|root,32U80@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2197821_4	380394.Lferr_0836	7.733e-122	401.0	COG0846@1|root,COG0846@2|Bacteria,1MW6J@1224|Proteobacteria,1SC02@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	SIR2-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SIR2_2
DYD3_k127_2197821_3	1132855.KB913035_gene133	3.542e-154	505.0	COG0732@1|root,COG0732@2|Bacteria,1MXVH@1224|Proteobacteria,2VM15@28216|Betaproteobacteria,2KKCH@206350|Nitrosomonadales	206350|Nitrosomonadales	V	Type I restriction modification DNA specificity domain	-	-	3.1.21.3	ko:K01154	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	Methylase_S
DYD3_k127_2197821_1	96561.Dole_0823	3.036e-270	836.0	COG0286@1|root,COG0286@2|Bacteria,1MW3A@1224|Proteobacteria,42P6W@68525|delta/epsilon subdivisions,2WM6H@28221|Deltaproteobacteria,2MIBS@213118|Desulfobacterales	28221|Deltaproteobacteria	L	PFAM N-6 DNA methylase	-	-	2.1.1.72	ko:K03427	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	HsdM_N,N6_Mtase
DYD3_k127_2197821_0	380394.Lferr_0832	0.0	1300.0	COG4096@1|root,COG4096@2|Bacteria,1QTS7@1224|Proteobacteria,1RN63@1236|Gammaproteobacteria,2NDP5@225057|Acidithiobacillales	225057|Acidithiobacillales	L	type III restriction protein res subunit	-	-	3.1.21.3	ko:K01153	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	EcoEI_R_C,Helicase_C,ResIII
DYD3_k127_2197821_7	227377.CBU_1820	0.0003855	43.0	2BHMV@1|root,32BQM@2|Bacteria,1N9I1@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2221069_0	1382359.JIAL01000001_gene2740	3.068e-94	314.0	COG0542@1|root,COG0542@2|Bacteria,3Y35D@57723|Acidobacteria,2JIRK@204432|Acidobacteriia	204432|Acidobacteriia	O	Belongs to the ClpA ClpB family	-	-	-	ko:K03696	ko01100,map01100	-	-	-	ko00000,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD3_k127_2221069_3	329726.AM1_0974	1.129e-08	57.0	COG1136@1|root,COG1136@2|Bacteria,1G1SM@1117|Cyanobacteria	1117|Cyanobacteria	V	TIGRFAM ABC exporter ATP-binding subunit, DevA family	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_2221069_4	883126.HMPREF9710_04929	1.724e-08	59.0	COG2207@1|root,COG2207@2|Bacteria,1R1R6@1224|Proteobacteria,2WI4M@28216|Betaproteobacteria,4785C@75682|Oxalobacteraceae	28216|Betaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
DYD3_k127_2221069_1	373994.Riv7116_6487	7.751e-91	302.0	COG0500@1|root,COG2226@2|Bacteria,1G4JV@1117|Cyanobacteria	1117|Cyanobacteria	Q	Methylase involved in ubiquinone menaquinone biosynthesis	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_31
DYD3_k127_2221069_2	1056820.KB900699_gene1255	7.088e-17	79.0	COG3664@1|root,COG3693@1|root,COG5297@1|root,COG3664@2|Bacteria,COG3693@2|Bacteria,COG5297@2|Bacteria,1R7BZ@1224|Proteobacteria,1S17S@1236|Gammaproteobacteria,2PN39@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	G	Ca-dependent carbohydrate-binding module xylan-binding	-	-	-	-	-	-	-	-	-	-	-	-	CBM60,CBM_5_12_2,Glyco_hydro_10
DYD3_k127_2294612_4	1262915.BN574_01773	1.254e-88	305.0	COG0484@1|root,COG0484@2|Bacteria,1TP00@1239|Firmicutes,4H28A@909932|Negativicutes	909932|Negativicutes	O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	dnaJ	-	-	ko:K03686	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	DnaJ,DnaJ_C,DnaJ_CXXCXGXG
DYD3_k127_2294612_0	525904.Tter_1750	1.628e-234	743.0	COG0443@1|root,COG0443@2|Bacteria,2NNU1@2323|unclassified Bacteria	2|Bacteria	O	Heat shock 70 kDa protein	dnaK	-	-	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	1.A.33.1	-	-	HSP70
DYD3_k127_2294612_12	1120950.KB892716_gene2444	2.833e-21	101.0	COG0576@1|root,COG0576@2|Bacteria,2GP4F@201174|Actinobacteria,4DQY5@85009|Propionibacteriales	201174|Actinobacteria	O	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ	grpE	GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0017076,GO:0030234,GO:0030312,GO:0030554,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036094,GO:0040007,GO:0042594,GO:0044464,GO:0050790,GO:0050896,GO:0051082,GO:0051716,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0071496,GO:0071944,GO:0097159,GO:0098772,GO:1901265,GO:1901363	-	ko:K03687	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	GrpE
DYD3_k127_2294612_9	357808.RoseRS_1154	3.573e-28	118.0	COG0103@1|root,COG0103@2|Bacteria,2G6UZ@200795|Chloroflexi,375Q1@32061|Chloroflexia	32061|Chloroflexia	J	Belongs to the universal ribosomal protein uS9 family	rpsI	-	-	ko:K02996	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S9
DYD3_k127_2294612_13	1121875.KB907550_gene884	4.342e-17	87.0	COG0102@1|root,COG0102@2|Bacteria,4NNGA@976|Bacteroidetes,1I170@117743|Flavobacteriia	976|Bacteroidetes	J	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	rplM	-	-	ko:K02871	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L13
DYD3_k127_2294612_10	1382356.JQMP01000003_gene2289	9.949e-26	110.0	COG0203@1|root,COG0203@2|Bacteria,2G79I@200795|Chloroflexi,27YDE@189775|Thermomicrobia	189775|Thermomicrobia	J	Ribosomal protein L17	rplQ	-	-	ko:K02879	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L17
DYD3_k127_2294612_6	879310.HMPREF9162_0969	7.17e-66	236.0	COG0202@1|root,COG0202@2|Bacteria,1TPR8@1239|Firmicutes,4H28U@909932|Negativicutes	909932|Negativicutes	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoA	-	2.7.7.6	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L
DYD3_k127_2294612_7	1121428.DESHY_150067___1	3.378e-33	136.0	COG0522@1|root,COG0522@2|Bacteria,1TR0J@1239|Firmicutes,248Y5@186801|Clostridia,260U9@186807|Peptococcaceae	186801|Clostridia	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	rpsD	-	-	ko:K02986	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S4,S4
DYD3_k127_2294612_8	1123303.AQVD01000007_gene51	6.386e-31	126.0	COG0100@1|root,COG0100@2|Bacteria,1V3IK@1239|Firmicutes,4HH2T@91061|Bacilli	91061|Bacilli	J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	rpsK	GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02948	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S11
DYD3_k127_2294612_11	1423755.BAML01000013_gene986	1.43e-25	110.0	COG0099@1|root,COG0099@2|Bacteria,1V3JH@1239|Firmicutes,4HGX6@91061|Bacilli,3F6GN@33958|Lactobacillaceae	91061|Bacilli	J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	rpsM	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02952	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S13
DYD3_k127_2294612_15	946077.W5A_08567	1.529e-06	50.0	COG0257@1|root,COG0257@2|Bacteria,4NXGE@976|Bacteroidetes,1I6A2@117743|Flavobacteriia	976|Bacteroidetes	J	Belongs to the bacterial ribosomal protein bL36 family	rpmJ	-	-	ko:K02919	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L36
DYD3_k127_2294612_14	497964.CfE428DRAFT_2247	1.239e-12	70.0	COG0361@1|root,COG0361@2|Bacteria	2|Bacteria	J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex	infA	GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065	-	ko:K02518	-	-	-	-	ko00000,ko03012	-	-	-	eIF-1a
DYD3_k127_2294612_2	754027.HMPREF9554_01184	2.197e-162	532.0	COG0013@1|root,COG0013@2|Bacteria,2J5G2@203691|Spirochaetes	203691|Spirochaetes	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	-	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
DYD3_k127_2294612_1	1502852.FG94_03382	8.071e-194	624.0	COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,2VMJF@28216|Betaproteobacteria,473TW@75682|Oxalobacteraceae	28216|Betaproteobacteria	O	Peptidase family M13	-	-	-	ko:K07386	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M13,Peptidase_M13_N
DYD3_k127_2294612_3	266762.HQ36_08110	2.884e-92	308.0	COG0692@1|root,COG0692@2|Bacteria,4NE2B@976|Bacteroidetes,2FM57@200643|Bacteroidia,22WGA@171551|Porphyromonadaceae	976|Bacteroidetes	L	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine	ung	-	3.2.2.27	ko:K03648	ko03410,ko05340,map03410,map05340	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_2294612_5	237368.SCABRO_00086	3.199e-76	264.0	COG2887@1|root,COG2887@2|Bacteria	2|Bacteria	L	Belongs to the helicase family. UvrD subfamily	-	-	3.6.4.12	ko:K10742	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	AAA_24,PDDEXK_1
DYD3_k127_2322988_0	760142.Hipma_0028	2.397e-10	63.0	COG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,42UC6@68525|delta/epsilon subdivisions,2WPDD@28221|Deltaproteobacteria,2M79G@213113|Desulfurellales	28221|Deltaproteobacteria	L	Likely ribonuclease with RNase H fold.	-	-	-	ko:K07447	-	-	-	-	ko00000,ko01000	-	-	-	RuvX
DYD3_k127_2324964_0	644968.DFW101_2954	8.116e-126	414.0	COG3464@1|root,COG3464@2|Bacteria,1MV5J@1224|Proteobacteria,42M93@68525|delta/epsilon subdivisions,2WK5I@28221|Deltaproteobacteria,2M9GS@213115|Desulfovibrionales	28221|Deltaproteobacteria	L	PFAM Transposase, IS204 IS1001 IS1096 IS1165	-	-	-	ko:K07485	-	-	-	-	ko00000	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
DYD3_k127_2328377_0	69279.BG36_20875	9.784e-136	448.0	COG1783@1|root,COG4373@1|root,COG1783@2|Bacteria,COG4373@2|Bacteria,1PE12@1224|Proteobacteria,2V9EC@28211|Alphaproteobacteria,43QJZ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Mu-like prophage FluMu protein gp28	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2424748_3	713586.KB900536_gene334	1.429e-44	166.0	COG2840@1|root,COG2840@2|Bacteria,1MVS6@1224|Proteobacteria,1RPXD@1236|Gammaproteobacteria,1X2FW@135613|Chromatiales	135613|Chromatiales	S	PFAM Smr	-	-	-	-	-	-	-	-	-	-	-	-	Smr
DYD3_k127_2424748_2	1209072.ALBT01000035_gene1460	1.151e-47	177.0	COG0346@1|root,COG0346@2|Bacteria	2|Bacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_2424748_1	1238182.C882_4307	2.712e-59	213.0	COG1335@1|root,COG1335@2|Bacteria,1RDHA@1224|Proteobacteria,2U71S@28211|Alphaproteobacteria,2JSCC@204441|Rhodospirillales	204441|Rhodospirillales	Q	COG1335 Amidases related to nicotinamidase	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_2424748_0	1056820.KB900631_gene2388	3.461e-117	382.0	COG2273@1|root,COG2273@2|Bacteria,1R709@1224|Proteobacteria,1S1PG@1236|Gammaproteobacteria,2PQC9@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	G	Glycosyl hydrolases family 16	-	-	-	-	-	-	-	-	-	-	-	-	CBM_10,CBM_5_12_2,Glyco_hydro_16
DYD3_k127_2475044_0	525373.HMPREF0766_12404	2.442e-94	330.0	COG1061@1|root,COG1061@2|Bacteria,4NECV@976|Bacteroidetes,1IPN1@117747|Sphingobacteriia	976|Bacteroidetes	L	DEAD-like helicases superfamily	-	-	-	-	-	-	-	-	-	-	-	-	DUF3427,Helicase_C,PLDc_2,ResIII
DYD3_k127_2475044_1	1443665.JACA01000045_gene4683	5.06e-70	253.0	COG0714@1|root,COG0714@2|Bacteria,4NJZG@976|Bacteroidetes,1I2DY@117743|Flavobacteriia	976|Bacteroidetes	S	Protein of unknown function (DUF3987)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3987
DYD3_k127_2476751_0	1479235.KK366039_gene2993	6.762e-130	417.0	COG0745@1|root,COG0745@2|Bacteria,1RA00@1224|Proteobacteria,1S23N@1236|Gammaproteobacteria,1XJE7@135619|Oceanospirillales	135619|Oceanospirillales	K	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_2476751_4	382464.ABSI01000020_gene212	3.282e-09	57.0	COG1629@1|root,COG4771@2|Bacteria	2|Bacteria	P	TonB-dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	CarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_dep_Rec
DYD3_k127_2476751_3	28229.ND2E_0205	1.533e-09	68.0	COG3713@1|root,COG3713@2|Bacteria,1QP5T@1224|Proteobacteria,1S0K7@1236|Gammaproteobacteria,2Q7TU@267889|Colwelliaceae	1236|Gammaproteobacteria	M	MltA-interacting protein MipA	-	-	-	ko:K07274	-	-	-	-	ko00000,ko02000	9.B.99.1	-	-	MipA
DYD3_k127_2476751_2	1122194.AUHU01000005_gene871	1.262e-24	105.0	COG0745@1|root,COG0745@2|Bacteria,1RA00@1224|Proteobacteria,1S23N@1236|Gammaproteobacteria,466SY@72275|Alteromonadaceae	1236|Gammaproteobacteria	K	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_2476751_1	382464.ABSI01000020_gene212	1.694e-25	105.0	COG1629@1|root,COG4771@2|Bacteria	2|Bacteria	P	TonB-dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	CarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_dep_Rec
DYD3_k127_2479245_5	754477.Q7C_975	3.145e-20	99.0	2DP71@1|root,330U0@2|Bacteria,1R5A0@1224|Proteobacteria,1RS7S@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF2971)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2971
DYD3_k127_2479245_0	1134474.O59_003978	2.325e-99	335.0	COG5635@1|root,COG5635@2|Bacteria,1NU5X@1224|Proteobacteria	1224|Proteobacteria	T	Nacht domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2479245_2	713586.KB900536_gene1520	7.11e-34	139.0	COG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,1RR4F@1236|Gammaproteobacteria,1WXZW@135613|Chromatiales	135613|Chromatiales	L	PFAM integrase	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve,rve_2
DYD3_k127_2479245_1	713586.KB900536_gene891	3.092e-34	134.0	COG2963@1|root,COG2963@2|Bacteria,1N3E0@1224|Proteobacteria,1S9T7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	COG2963 Transposase and inactivated derivatives	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD3_k127_2479245_3	443143.GM18_2883	3.171e-31	130.0	2F75K@1|root,33ZM1@2|Bacteria,1NXR6@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2479245_4	1197477.IA57_04110	7.874e-24	109.0	2EH3Y@1|root,33AVX@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2479245_6	1123393.KB891328_gene673	2.405e-19	92.0	29FWM@1|root,302UB@2|Bacteria,1PVWW@1224|Proteobacteria,2WBJ9@28216|Betaproteobacteria,1KS1Q@119069|Hydrogenophilales	119069|Hydrogenophilales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2481044_9	42256.RradSPS_0417	6.705e-09	57.0	COG0567@1|root,COG0567@2|Bacteria,2GIU6@201174|Actinobacteria,4CPG1@84995|Rubrobacteria	84995|Rubrobacteria	C	2-oxoglutarate dehydrogenase C-terminal	-	-	1.2.4.2	ko:K00164	ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R00621,R01933,R01940,R03316,R08549	RC00004,RC00027,RC00627,RC02743,RC02833,RC02883	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,2-oxogl_dehyd_N,Biotin_lipoyl,E1_dh,E3_binding,OxoGdeHyase_C,Transket_pyr
DYD3_k127_2481044_5	1134413.ANNK01000167_gene529	7.951e-25	113.0	COG1825@1|root,COG1825@2|Bacteria,1VA38@1239|Firmicutes,4HIMM@91061|Bacilli,1ZDPJ@1386|Bacillus	91061|Bacilli	J	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	ctc	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02897	ko03010,map03010	M00178	-	-	ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L25p,Ribosomal_TL5_C
DYD3_k127_2481044_11	756272.Plabr_2203	0.0003183	51.0	COG2165@1|root,COG2165@2|Bacteria	2|Bacteria	NU	general secretion pathway protein	-	-	-	ko:K02456	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl,SBP_bac_10
DYD3_k127_2481044_3	1304275.C41B8_12424	1.425e-83	288.0	COG3588@1|root,COG3588@2|Bacteria,1MVFK@1224|Proteobacteria,1RQ57@1236|Gammaproteobacteria	1236|Gammaproteobacteria	G	Belongs to the class I fructose-bisphosphate aldolase family	alf1	-	4.1.2.13	ko:K01623	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147	-	-	-	Glycolytic
DYD3_k127_2481044_7	1121423.JONT01000009_gene1505	2.983e-10	71.0	COG0524@1|root,COG0524@2|Bacteria,1TRRY@1239|Firmicutes,25BA0@186801|Clostridia,266VD@186807|Peptococcaceae	186801|Clostridia	G	Belongs to the carbohydrate kinase PfkB family	-	-	2.7.1.45	ko:K00874	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	M00061,M00308,M00631	R01541	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PfkB
DYD3_k127_2481044_0	1121924.ATWH01000014_gene3393	2.285e-105	353.0	COG3958@1|root,COG3958@2|Bacteria,2I8VM@201174|Actinobacteria,4FKW5@85023|Microbacteriaceae	201174|Actinobacteria	G	Transketolase, pyrimidine binding domain	-	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C
DYD3_k127_2481044_2	580340.Tlie_1478	1.169e-87	297.0	COG3959@1|root,COG3959@2|Bacteria,3TA23@508458|Synergistetes	508458|Synergistetes	G	PFAM Transketolase, thiamine diphosphate binding domain	-	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transketolase_N
DYD3_k127_2481044_6	946235.CAER01000034_gene1994	5.308e-20	99.0	COG0036@1|root,COG0036@2|Bacteria,1TQK8@1239|Firmicutes,4H9RW@91061|Bacilli,23J53@182709|Oceanobacillus	91061|Bacilli	G	Ribulose-phosphate 3 epimerase family	rpe	-	5.1.3.1	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01529	RC00540	ko00000,ko00001,ko00002,ko01000	-	-	-	Ribul_P_3_epim
DYD3_k127_2481044_4	313596.RB2501_09515	1.507e-44	167.0	COG0698@1|root,COG0698@2|Bacteria,4NP5D@976|Bacteroidetes,1I2XE@117743|Flavobacteriia	976|Bacteroidetes	G	Ribose/Galactose Isomerase	-	-	5.3.1.6	ko:K01808	ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01056,R09030	RC00376,RC00434	ko00000,ko00001,ko00002,ko01000	-	-	-	LacAB_rpiB
DYD3_k127_2481044_1	1173027.Mic7113_5594	3.903e-101	340.0	COG0057@1|root,COG0057@2|Bacteria,1G1CS@1117|Cyanobacteria,1H7J0@1150|Oscillatoriales	1117|Cyanobacteria	G	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	-	-	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
DYD3_k127_2481044_10	313606.M23134_07081	0.0001187	55.0	COG0729@1|root,COG0729@2|Bacteria,4NVBC@976|Bacteroidetes,47Y1F@768503|Cytophagia	976|Bacteroidetes	M	Chaperone of endosialidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S74
DYD3_k127_2481044_8	504472.Slin_0183	1.887e-09	71.0	COG0729@1|root,COG5295@1|root,COG0729@2|Bacteria,COG5295@2|Bacteria,4NVBC@976|Bacteroidetes,47Y1F@768503|Cytophagia	976|Bacteroidetes	M	Chaperone of endosialidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S74
DYD3_k127_2509805_1	1197719.A464_4230	4.024e-07	52.0	COG3237@1|root,COG3237@2|Bacteria,1N6X4@1224|Proteobacteria,1SDHP@1236|Gammaproteobacteria,3ZMKQ@590|Salmonella	1236|Gammaproteobacteria	S	CsbD-like	yjbJ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	CsbD
DYD3_k127_2509805_0	573065.Astex_1989	8.208e-79	271.0	COG0745@1|root,COG0745@2|Bacteria,1MWZ5@1224|Proteobacteria,2TV3A@28211|Alphaproteobacteria,2KG6B@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulator	-	-	-	ko:K07667	ko02020,ko02024,map02020,map02024	M00454	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_2527822_1	349521.HCH_00210	3.373e-43	164.0	COG1879@1|root,COG1879@2|Bacteria,1R8HF@1224|Proteobacteria,1RSFZ@1236|Gammaproteobacteria,1XPKN@135619|Oceanospirillales	135619|Oceanospirillales	G	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_4
DYD3_k127_2527822_2	246194.CHY_2509	2.255e-24	113.0	29WVR@1|root,30IHC@2|Bacteria,1UF3H@1239|Firmicutes,251AN@186801|Clostridia,42J0M@68295|Thermoanaerobacterales	186801|Clostridia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2595329_0	1380367.JIBC01000006_gene305	2.331e-09	66.0	2C5GI@1|root,2Z8C1@2|Bacteria,1R8XM@1224|Proteobacteria,2TUME@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	P22 coat protein - gene protein 5	-	-	-	-	-	-	-	-	-	-	-	-	P22_CoatProtein
DYD3_k127_2629500_1	1411123.JQNH01000001_gene1034	6.661e-69	236.0	COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,2TRX2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs	rne	-	3.1.26.12	ko:K08300	ko03018,map03018	M00394	-	-	ko00000,ko00001,ko00002,ko01000,ko03009,ko03019	-	-	-	RNase_E_G,S1
DYD3_k127_2629500_0	595494.Tola_0995	3.692e-237	736.0	COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,1RNA5@1236|Gammaproteobacteria,1Y50P@135624|Aeromonadales	135624|Aeromonadales	P	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity	katG	-	1.11.1.21	ko:K03782	ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110	-	R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906	RC00034,RC00213,RC00767,RC02141	ko00000,ko00001,ko01000	-	-	-	peroxidase
DYD3_k127_2670642_0	1499967.BAYZ01000034_gene1071	8.35e-09	61.0	2E46N@1|root,32Z2M@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_270444_1	3880.AES97351	2.649e-22	95.0	2CZUP@1|root,2SBR2@2759|Eukaryota,389ZI@33090|Viridiplantae	33090|Viridiplantae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_270444_0	3847.GLYMA13G11980.1	5.871e-67	231.0	2CUMQ@1|root,2RN4M@2759|Eukaryota,37U2D@33090|Viridiplantae,3GX5D@35493|Streptophyta,4JTXP@91835|fabids	35493|Streptophyta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2799469_2	1057002.KB905370_gene4613	3.295e-22	102.0	COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,4B9BA@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc,TPR_16,TPR_2,TPR_8
DYD3_k127_2799469_3	347834.RHE_CH00783	0.0009972	45.0	COG2801@1|root,COG2801@2|Bacteria,1MVN5@1224|Proteobacteria,2TQK0@28211|Alphaproteobacteria,4BHIM@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	COG2801 Transposase and inactivated derivatives	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	rve_3
DYD3_k127_2799469_1	1279038.KB907356_gene2017	3.391e-24	102.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1RB1C@1224|Proteobacteria,2U367@28211|Alphaproteobacteria,2JRZE@204441|Rhodospirillales	204441|Rhodospirillales	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
DYD3_k127_2799469_0	761193.Runsl_3793	1.32e-63	233.0	COG2755@1|root,COG2755@2|Bacteria,4NKBE@976|Bacteroidetes,47NHR@768503|Cytophagia	976|Bacteroidetes	E	lipolytic protein G-D-S-L family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
DYD3_k127_2863758_0	1500893.JQNB01000001_gene2574	3.92e-157	514.0	COG0331@1|root,COG2070@1|root,COG3321@1|root,COG0331@2|Bacteria,COG2070@2|Bacteria,COG3321@2|Bacteria,1MV6N@1224|Proteobacteria,1RNH3@1236|Gammaproteobacteria,1X367@135614|Xanthomonadales	1236|Gammaproteobacteria	I	malonyl CoA-acyl carrier protein transacylase	-	-	2.3.1.39	ko:K00645,ko:K13935	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	M00082	R01626,R11671	RC00004,RC00039,RC02727	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyl_transf_1
DYD3_k127_2863758_4	1291050.JAGE01000001_gene2822	5.622e-08	55.0	COG2801@1|root,COG2801@2|Bacteria,1TU21@1239|Firmicutes,249HN@186801|Clostridia,3WJSC@541000|Ruminococcaceae	186801|Clostridia	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_21,rve
DYD3_k127_2863758_3	1515746.HR45_07330	3.577e-10	60.0	COG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,1RR4F@1236|Gammaproteobacteria,2QEPK@267890|Shewanellaceae	1236|Gammaproteobacteria	L	PFAM Integrase, catalytic region	insF	GO:0008150,GO:0009987,GO:0032196	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve,rve_2
DYD3_k127_2863758_2	1123288.SOV_7c00110	6.835e-83	286.0	COG3321@1|root,COG3321@2|Bacteria,1TRPC@1239|Firmicutes,4H6RW@909932|Negativicutes	909932|Negativicutes	Q	Acyl transferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_1
DYD3_k127_2863758_1	358681.BBR47_29500	3.716e-136	460.0	COG1020@1|root,COG3320@1|root,COG1020@2|Bacteria,COG3320@2|Bacteria,1TPTH@1239|Firmicutes,4HAHU@91061|Bacilli,26Q93@186822|Paenibacillaceae	91061|Bacilli	Q	Non-ribosomal peptide synthetase modules and related proteins	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase
DYD3_k127_2882660_1	1089447.RHAA1_07536	3.204e-66	236.0	2DC2A@1|root,2ZCM4@2|Bacteria,1RBXZ@1224|Proteobacteria,1SDKK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2882660_2	323261.Noc_2045	2.335e-56	203.0	2EV8Z@1|root,33NPN@2|Bacteria,1NV7M@1224|Proteobacteria,1SNT1@1236|Gammaproteobacteria,1X0RM@135613|Chromatiales	135613|Chromatiales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2882660_3	269797.Mbar_A2621	1.577e-47	198.0	arCOG06858@1|root,arCOG06858@2157|Archaea,2Y2PH@28890|Euryarchaeota,2NA94@224756|Methanomicrobia	224756|Methanomicrobia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2882660_7	349521.HCH_05556	5.848e-16	82.0	2DH1U@1|root,2ZY3B@2|Bacteria,1P4AC@1224|Proteobacteria,1STFQ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2882660_4	1333856.L686_08245	4.732e-47	172.0	COG0515@1|root,COG0515@2|Bacteria,1N577@1224|Proteobacteria,1S5IV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	KLT	serine threonine protein kinase	-	-	-	-	-	-	-	-	-	-	-	-	Coa1
DYD3_k127_2882660_8	1156937.MFUM_310003	2.082e-06	56.0	COG1403@1|root,COG1403@2|Bacteria	2|Bacteria	V	endonuclease activity	-	-	-	-	-	-	-	-	-	-	-	-	HNH
DYD3_k127_2882660_5	521011.Mpal_1494	5.08e-34	134.0	COG5507@1|root,arCOG09468@2157|Archaea,2Y13Q@28890|Euryarchaeota,2NB85@224756|Methanomicrobia	224756|Methanomicrobia	S	Protein of unknown function (DUF1428)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1428
DYD3_k127_2882660_9	1194165.CAJF01000013_gene1287	0.0002546	52.0	2DG3P@1|root,2ZUBI@2|Bacteria,2IJPQ@201174|Actinobacteria,4FNQ2@85023|Microbacteriaceae	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2882660_0	377629.TERTU_3761	2.502e-99	330.0	COG0491@1|root,COG0491@2|Bacteria,1RJ82@1224|Proteobacteria,1S8MG@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	3.5.2.6	ko:K17837	ko01501,map01501	-	R06363	RC01499	ko00000,ko00001,ko01000	-	-	-	Lactamase_B
DYD3_k127_2882788_1	1134474.O59_002988	8.011e-48	178.0	COG3755@1|root,COG3755@2|Bacteria,1NQ99@1224|Proteobacteria,1SHQM@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Pfam:DUF1311	-	-	-	-	-	-	-	-	-	-	-	-	LprI
DYD3_k127_2882788_0	745411.B3C1_15994	3.292e-80	269.0	2EJUM@1|root,33DJ9@2|Bacteria,1NB9C@1224|Proteobacteria,1SNZY@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2882788_3	745411.B3C1_15994	3.505e-13	70.0	2EJUM@1|root,33DJ9@2|Bacteria,1NB9C@1224|Proteobacteria,1SNZY@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2882788_2	1219065.VPR01S_14_00080	1.161e-20	96.0	2EA56@1|root,334A3@2|Bacteria,1NCPT@1224|Proteobacteria,1SCG5@1236|Gammaproteobacteria,1XZFV@135623|Vibrionales	135623|Vibrionales	S	Hypothetical protein (DUF2513)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2513
DYD3_k127_291135_0	1469607.KK073768_gene3614	4.78e-77	266.0	COG3293@1|root,COG3293@2|Bacteria,1G0BW@1117|Cyanobacteria,1HNSC@1161|Nostocales	1117|Cyanobacteria	L	transposase	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2,DUF4096
DYD3_k127_2948308_0	9544.ENSMMUP00000032836	7.81e-256	797.0	COG2801@1|root,KOG1075@1|root,KOG0017@2759|Eukaryota,KOG1075@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48QAQ@7711|Chordata,49KWV@7742|Vertebrata	33208|Metazoa	L	K02A2.6-like	-	-	-	-	-	-	-	-	-	-	-	-	Chromo,RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
DYD3_k127_2948308_1	9544.ENSMMUP00000032836	2.12e-222	695.0	COG2801@1|root,KOG1075@1|root,KOG0017@2759|Eukaryota,KOG1075@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48QAQ@7711|Chordata,49KWV@7742|Vertebrata	33208|Metazoa	L	K02A2.6-like	-	-	-	-	-	-	-	-	-	-	-	-	Chromo,RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
DYD3_k127_2963255_1	1489678.RDMS_00910	1.014e-17	89.0	COG3415@1|root,COG3415@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3,HTH_23,HTH_29,HTH_32,HTH_33
DYD3_k127_2963255_0	1121382.JQKG01000100_gene2827	2.407e-26	115.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3,HTH_23,HTH_33
DYD3_k127_2981914_5	1196323.ALKF01000190_gene5410	3.79e-54	204.0	COG1104@1|root,COG1104@2|Bacteria,1TP21@1239|Firmicutes,4HAEE@91061|Bacilli,26S10@186822|Paenibacillaceae	91061|Bacilli	E	Cysteine desulfurase	nifZ	-	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
DYD3_k127_2981914_0	667014.Thein_2100	8.736e-291	917.0	COG0542@1|root,COG0542@2|Bacteria,2GGRY@200940|Thermodesulfobacteria	200940|Thermodesulfobacteria	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD3_k127_2981914_9	1444712.BN1013_02005	1.225e-06	51.0	COG0267@1|root,COG0267@2|Bacteria,2JGJK@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the bacterial ribosomal protein bL33 family	rpmG	-	-	ko:K02913	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L33
DYD3_k127_2981914_11	232721.Ajs_1015	1.603e-05	57.0	COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,2VKFN@28216|Betaproteobacteria,4ACM2@80864|Comamonadaceae	28216|Betaproteobacteria	M	PFAM Lytic transglycosylase catalytic	-	-	-	-	-	-	-	-	-	-	-	-	DUF4124,SLT
DYD3_k127_2981914_7	309801.trd_A0869	7.875e-54	201.0	COG0324@1|root,COG0324@2|Bacteria,2G5S7@200795|Chloroflexi,27XIQ@189775|Thermomicrobia	189775|Thermomicrobia	J	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)	miaA	-	2.5.1.75	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	-	R01122	RC02820	ko00000,ko00001,ko01000,ko01006,ko03016	-	-	-	IPPT
DYD3_k127_2981914_4	351160.RCIX1144	3.55e-74	262.0	COG0450@1|root,arCOG00312@2157|Archaea,2XYCY@28890|Euryarchaeota	28890|Euryarchaeota	O	AhpC/TSA family	-	-	1.11.1.15	ko:K03386	ko04214,map04214	-	-	-	ko00000,ko00001,ko01000,ko04147	-	-	-	1-cysPrx_C,AhpC-TSA
DYD3_k127_2981914_6	744872.Spica_2788	5.375e-54	202.0	COG1475@1|root,COG1475@2|Bacteria,2J5S6@203691|Spirochaetes	203691|Spirochaetes	K	Belongs to the ParB family	spo0J	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
DYD3_k127_2981914_2	632335.Calkr_0752	1.212e-124	418.0	COG0317@1|root,COG0317@2|Bacteria,1TNYZ@1239|Firmicutes,2489A@186801|Clostridia,42F3U@68295|Thermoanaerobacterales	186801|Clostridia	KT	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance	relA	-	2.7.6.5	ko:K00951	ko00230,map00230	-	R00429	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	iHN637.CLJU_RS16615	ACT_4,HD_4,RelA_SpoT,TGS
DYD3_k127_2981914_1	1124780.ANNU01000002_gene1575	2.736e-161	536.0	COG0550@1|root,COG0550@2|Bacteria,4NF9S@976|Bacteroidetes,47K7C@768503|Cytophagia	976|Bacteroidetes	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	topA	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	Topoisom_bac,Toprim,Toprim_C_rpt
DYD3_k127_2981914_8	1123371.ATXH01000013_gene1511	5.143e-53	197.0	COG0758@1|root,COG0758@2|Bacteria,2GHI2@200940|Thermodesulfobacteria	200940|Thermodesulfobacteria	LU	DNA recombination-mediator protein A	-	-	-	ko:K04096	-	-	-	-	ko00000	-	-	-	DNA_processg_A
DYD3_k127_2981914_3	1089548.KI783301_gene3209	1.063e-122	409.0	COG0172@1|root,COG0172@2|Bacteria,1TP4W@1239|Firmicutes,4H9Y4@91061|Bacilli,3WDW8@539002|Bacillales incertae sedis	91061|Bacilli	J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)	serS	-	6.1.1.11	ko:K01875	ko00970,map00970	M00359,M00360	R03662,R08218	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Seryl_tRNA_N,tRNA-synt_2b
DYD3_k127_299480_0	1170562.Cal6303_0400	2.867e-146	476.0	COG3385@1|root,COG3385@2|Bacteria,1G2T1@1117|Cyanobacteria,1HMX0@1161|Nostocales	1117|Cyanobacteria	L	PFAM Transposase DDE domain	-	-	-	ko:K07495	-	-	-	-	ko00000	-	-	-	DDE_5,DDE_Tnp_1
DYD3_k127_3024505_4	83406.HDN1F_14580	7.73e-15	77.0	COG2149@1|root,COG2149@2|Bacteria,1N173@1224|Proteobacteria,1SC54@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Domain of unknown function (DUF202)	-	-	-	ko:K00389	-	-	-	-	ko00000	-	-	-	DUF202
DYD3_k127_3024505_1	1415778.JQMM01000001_gene1449	5.987e-164	541.0	COG4206@1|root,COG4206@2|Bacteria,1MUZG@1224|Proteobacteria,1RP7I@1236|Gammaproteobacteria,1J4FA@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	H	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	CarboxypepD_reg,Plug,TonB_dep_Rec
DYD3_k127_3024505_7	398767.Glov_0520	3.156e-09	57.0	COG3464@1|root,COG3464@2|Bacteria,1R4DH@1224|Proteobacteria,43AQ4@68525|delta/epsilon subdivisions,2X63W@28221|Deltaproteobacteria,43W3F@69541|Desulfuromonadales	28221|Deltaproteobacteria	L	PFAM transposase IS204 IS1001 IS1096 IS1165 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_ISL3,zf-ISL3
DYD3_k127_3024505_2	243233.MCA1269	4.469e-44	164.0	COG3339@1|root,COG3339@2|Bacteria,1MZCY@1224|Proteobacteria,1SANY@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1232)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1232
DYD3_k127_3024505_0	589865.DaAHT2_0125	2.606e-273	865.0	COG0574@1|root,COG0574@2|Bacteria,1N38V@1224|Proteobacteria,42MWC@68525|delta/epsilon subdivisions,2WKAZ@28221|Deltaproteobacteria,2MPUP@213118|Desulfobacterales	28221|Deltaproteobacteria	H	PFAM pyruvate phosphate dikinase PEP pyruvate-binding	-	-	-	-	-	-	-	-	-	-	-	-	PPDK_N
DYD3_k127_3024505_5	388413.ALPR1_18508	1.243e-13	78.0	2EBD5@1|root,335DV@2|Bacteria,4NWMF@976|Bacteroidetes	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	MoaF_C
DYD3_k127_3024505_3	555778.Hneap_0086	8.097e-24	103.0	2EDPA@1|root,337IZ@2|Bacteria,1NF70@1224|Proteobacteria,1SFC9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3047175_1	926569.ANT_30490	1.039e-54	198.0	COG0496@1|root,COG0496@2|Bacteria	2|Bacteria	P	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates	surE	-	3.1.3.5	ko:K03787	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	-	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000	-	-	-	SurE
DYD3_k127_3047175_0	765914.ThisiDRAFT_2091	3.652e-112	377.0	COG2801@1|root,COG3415@1|root,COG2801@2|Bacteria,COG3415@2|Bacteria,1MWVQ@1224|Proteobacteria,1RN12@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	PFAM Integrase catalytic	-	-	-	-	-	-	-	-	-	-	-	-	HTH_28,rve
DYD3_k127_305_2	331869.BAL199_10270	3.395e-30	121.0	COG1670@1|root,COG1670@2|Bacteria,1RABT@1224|Proteobacteria,2U6PR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Acetyltransferases, including N-acetylases of ribosomal proteins	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
DYD3_k127_305_0	1229909.NSED_01900	1.343e-98	326.0	COG0605@1|root,arCOG04147@2157|Archaea,41S6C@651137|Thaumarchaeota	651137|Thaumarchaeota	P	Destroys radicals which are normally produced within the cells and which are toxic to biological systems	-	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
DYD3_k127_305_1	1229909.NSED_01905	1.787e-54	194.0	COG1730@1|root,arCOG01341@2157|Archaea,41SSP@651137|Thaumarchaeota	651137|Thaumarchaeota	O	Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding	pfdA	-	-	ko:K04797	-	-	-	-	ko00000,ko03110	-	-	-	Prefoldin
DYD3_k127_305_3	1229909.NSED_01910	0.0002274	44.0	COG0552@1|root,arCOG01227@2157|Archaea,41SCC@651137|Thaumarchaeota	651137|Thaumarchaeota	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)	ftsY	-	-	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2,3.A.5.7	-	-	SRP54,SRP54_N
DYD3_k127_3059250_2	1297742.A176_00262	1.063e-23	118.0	COG1470@1|root,COG2885@1|root,COG4719@1|root,COG1470@2|Bacteria,COG2885@2|Bacteria,COG4719@2|Bacteria,1MX1F@1224|Proteobacteria,42UTB@68525|delta/epsilon subdivisions,2WQUW@28221|Deltaproteobacteria,2YUE1@29|Myxococcales	28221|Deltaproteobacteria	M	Belongs to the ompA family	-	-	-	ko:K20276	ko02024,map02024	-	-	-	ko00000,ko00001	-	-	-	Big_3_2,DUF11,OmpA,Phenol_MetA_deg,TSP_3
DYD3_k127_3059250_1	1122176.KB903551_gene4259	1.608e-35	153.0	COG1572@1|root,COG1572@2|Bacteria,4NJ3E@976|Bacteroidetes	976|Bacteroidetes	O	Domain of unknown function (DUF5122) beta-propeller	-	-	-	-	-	-	-	-	-	-	-	-	DUF5122
DYD3_k127_3059250_0	382464.ABSI01000011_gene2575	9.723e-107	355.0	COG3391@1|root,COG3391@2|Bacteria,46V2K@74201|Verrucomicrobia	74201|Verrucomicrobia	S	amine dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3059250_3	1169161.KB897716_gene5964	2.847e-20	94.0	COG0726@1|root,COG0726@2|Bacteria,2GMI0@201174|Actinobacteria	201174|Actinobacteria	G	Belongs to the glycosyl hydrolase 11 (cellulase G) family	xlnB	-	3.2.1.8	ko:K01181	-	-	-	-	ko00000,ko01000	-	-	-	Glyco_hydro_11,Polysacc_deac_1
DYD3_k127_3068599_2	1266925.JHVX01000008_gene266	2.147e-28	116.0	COG1943@1|root,COG1943@2|Bacteria,1P19I@1224|Proteobacteria,2VKZ3@28216|Betaproteobacteria	28216|Betaproteobacteria	L	Transposase	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_3068599_4	1230476.C207_03753	6.258e-18	87.0	COG3791@1|root,COG3791@2|Bacteria,1N031@1224|Proteobacteria,2U764@28211|Alphaproteobacteria,3JXS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_3068599_1	1121904.ARBP01000003_gene6259	1.942e-37	143.0	2E4GE@1|root,32ZBK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3068599_0	1123053.AUDG01000046_gene1880	7.099e-48	173.0	COG4430@1|root,COG4430@2|Bacteria,1RGC9@1224|Proteobacteria,1SE5C@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Bacteriocin-protection, YdeI or OmpD-Associated	-	-	-	-	-	-	-	-	-	-	-	-	DUF1905,OmdA
DYD3_k127_3068599_3	1499967.BAYZ01000117_gene3326	2.202e-19	87.0	COG4832@1|root,COG4832@2|Bacteria	2|Bacteria	S	GyrI-like small molecule binding domain	-	-	-	-	-	-	-	-	-	-	-	-	GyrI-like
DYD3_k127_3072976_0	439235.Dalk_4561	2.856e-26	123.0	COG5525@1|root,COG5525@2|Bacteria,1NE5I@1224|Proteobacteria	1224|Proteobacteria	S	Phage terminase large subunit (GpA)	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_GpA
DYD3_k127_3086229_3	311403.Arad_0325	1.044e-09	63.0	COG2329@1|root,COG2329@2|Bacteria,1NCKJ@1224|Proteobacteria,2UV5C@28211|Alphaproteobacteria,4BFS8@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_3086229_0	1038859.AXAU01000005_gene4999	6.054e-100	327.0	COG0262@1|root,COG0262@2|Bacteria,1MY3I@1224|Proteobacteria,2U3DT@28211|Alphaproteobacteria,3K2YH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	RibD C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	RibD_C
DYD3_k127_3086229_4	379731.PST_2696	1.279e-09	62.0	COG0454@1|root,COG0456@2|Bacteria,1N2MG@1224|Proteobacteria,1S7HX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_7
DYD3_k127_3086229_1	187303.BN69_2539	8.093e-86	306.0	COG1073@1|root,COG1073@2|Bacteria,1QWS2@1224|Proteobacteria	1224|Proteobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3086229_2	316067.Geob_1805	2.711e-16	79.0	COG3618@1|root,COG3618@2|Bacteria,1PF81@1224|Proteobacteria,42Z8K@68525|delta/epsilon subdivisions,2WU9E@28221|Deltaproteobacteria,43TN1@69541|Desulfuromonadales	28221|Deltaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
DYD3_k127_3123068_0	351348.Maqu_0408	4.525e-115	380.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1MW8A@1224|Proteobacteria,1RRNV@1236|Gammaproteobacteria,46D6X@72275|Alteromonadaceae	1236|Gammaproteobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3,HTH_28,HTH_29,HTH_32,HTH_33
DYD3_k127_3138308_5	1249627.D779_3606	3.204e-35	135.0	COG1943@1|root,COG1943@2|Bacteria,1P19I@1224|Proteobacteria,1RQYI@1236|Gammaproteobacteria,1WX1R@135613|Chromatiales	135613|Chromatiales	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_3138308_1	400668.Mmwyl1_2458	2.832e-105	348.0	COG3910@1|root,COG3910@2|Bacteria,1MZSY@1224|Proteobacteria,1RZF5@1236|Gammaproteobacteria,1XQJI@135619|Oceanospirillales	1236|Gammaproteobacteria	S	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_21,AAA_23
DYD3_k127_3138308_3	1123393.KB891329_gene1019	3.552e-54	202.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,2VW6N@28216|Betaproteobacteria	28216|Betaproteobacteria	M	RHS protein	-	-	-	-	-	-	-	-	-	-	-	-	GH-E,PAAR_motif,RHS,RHS_repeat
DYD3_k127_3138308_4	1150621.SMUL_0025	2.547e-47	178.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,42SUS@68525|delta/epsilon subdivisions,2YQB0@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	O	Sel1-like repeats.	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	NifU,Sel1
DYD3_k127_3138308_2	316067.Geob_3673	6.397e-75	268.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,42R71@68525|delta/epsilon subdivisions,2WMW5@28221|Deltaproteobacteria,43SWS@69541|Desulfuromonadales	28221|Deltaproteobacteria	M	RHS protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF4150,RHS,RHS_repeat
DYD3_k127_3138308_0	713586.KB900536_gene75	6.567e-164	554.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,1RP75@1236|Gammaproteobacteria,1WWJF@135613|Chromatiales	135613|Chromatiales	M	TIGRFAM RHS repeat-associated core domain	-	-	-	-	-	-	-	-	-	-	-	-	RHS,RHS_repeat
DYD3_k127_3177520_0	324602.Caur_3235	9.662e-32	130.0	COG3677@1|root,COG3677@2|Bacteria	2|Bacteria	L	transposition, DNA-mediated	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS1595,HTH_23
DYD3_k127_3177520_1	118173.KB235914_gene2112	1.846e-25	112.0	COG3676@1|root,COG3676@2|Bacteria	2|Bacteria	L	ISXO2-like transposase domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS1595,Zn_Tnp_IS1595
DYD3_k127_3192591_1	1121015.N789_09045	2.192e-48	179.0	COG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,1RPBN@1236|Gammaproteobacteria,1X36H@135614|Xanthomonadales	135614|Xanthomonadales	J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	-	-	2.1.1.193	ko:K09761	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_RNA
DYD3_k127_3206871_0	448385.sce4871	2.98e-24	108.0	COG1073@1|root,COG3055@1|root,COG1073@2|Bacteria,COG3055@2|Bacteria,1QE0Q@1224|Proteobacteria,4318S@68525|delta/epsilon subdivisions,2WX4P@28221|Deltaproteobacteria,2YYIK@29|Myxococcales	28221|Deltaproteobacteria	S	Domain of unknown function (DUF1929)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1929,Glyoxal_oxid_N,Kelch_1,Kelch_4
DYD3_k127_3206871_1	344747.PM8797T_00999	0.0004035	45.0	2EUSR@1|root,33N8A@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3222382_0	1341679.P253_02805	9.096e-107	353.0	COG2801@1|root,COG2801@2|Bacteria,1MWNX@1224|Proteobacteria,1RW9F@1236|Gammaproteobacteria,3NJTA@468|Moraxellaceae	1236|Gammaproteobacteria	L	Integrase core domain	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_23,HTH_28,HTH_32,rve,rve_3
DYD3_k127_3222382_3	449447.MAE_11690	7.138e-37	143.0	COG1234@1|root,COG1234@2|Bacteria,1G1SW@1117|Cyanobacteria	1117|Cyanobacteria	L	PFAM Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_4,HTH_Tnp_4
DYD3_k127_3222382_5	1385420.FRA_17c00050	3.027e-14	75.0	COG3293@1|root,2ZJP3@2|Bacteria,1N918@1224|Proteobacteria,1T83V@1236|Gammaproteobacteria,463DF@72273|Thiotrichales	72273|Thiotrichales	L	Psort location Cytoplasmic, score 8.96	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_4,HTH_Tnp_4
DYD3_k127_3222382_4	449447.MAE_27020	1.913e-22	99.0	COG1234@1|root,COG1234@2|Bacteria,1G1SW@1117|Cyanobacteria	1117|Cyanobacteria	L	PFAM Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_4,HTH_Tnp_4
DYD3_k127_3222382_1	1185876.BN8_01180	1.431e-54	196.0	COG1595@1|root,COG1595@2|Bacteria,4NRSU@976|Bacteroidetes,47UTH@768503|Cytophagia	976|Bacteroidetes	K	Sigma-70 region 2	-	-	-	-	-	-	-	-	-	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_3222382_2	316274.Haur_0715	1.821e-51	192.0	COG1028@1|root,COG1028@2|Bacteria,2GBI1@200795|Chloroflexi	200795|Chloroflexi	IQ	Fungal family of unknown function (DUF1776)	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_3244856_2	1114964.L485_18385	4.103e-17	81.0	COG3293@1|root,COG3293@2|Bacteria,1RDDI@1224|Proteobacteria,2UAE0@28211|Alphaproteobacteria,2K6GM@204457|Sphingomonadales	204457|Sphingomonadales	L	COG3293 Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	DUF4096
DYD3_k127_3244856_3	1121033.AUCF01000008_gene5768	1.079e-08	58.0	COG3415@1|root,COG3415@2|Bacteria,1QWK4@1224|Proteobacteria,2TX0C@28211|Alphaproteobacteria,2JXFR@204441|Rhodospirillales	204441|Rhodospirillales	L	Homeodomain-like domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23
DYD3_k127_3244856_0	1123519.PSJM300_08340	7.659e-115	386.0	COG1086@1|root,COG2148@1|root,COG1086@2|Bacteria,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,1RMMN@1236|Gammaproteobacteria,1Z1YK@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	GM	Capsular polysaccharide biosynthesis protein	pslA	-	-	ko:K20997	ko02025,map02025	-	-	-	ko00000,ko00001	-	-	-	Bac_transf,CoA_binding_3
DYD3_k127_3244856_1	1045855.DSC_13670	4.844e-67	243.0	COG0438@1|root,COG0438@2|Bacteria,1R4P4@1224|Proteobacteria,1RYFN@1236|Gammaproteobacteria,1X9F2@135614|Xanthomonadales	1224|Proteobacteria	M	Glycosyl transferase family 1	-	-	2.4.1.264	ko:K13659	-	-	R09732	RC00005,RC00049	ko00000,ko01000,ko01003	-	GT70	-	-
DYD3_k127_3275648_0	1237149.C900_05265	1.069e-152	491.0	COG3179@1|root,COG3179@2|Bacteria,4NF8K@976|Bacteroidetes,47Q6C@768503|Cytophagia	976|Bacteroidetes	M	Fibronectin type 3 domain	-	-	-	-	-	-	-	-	-	-	-	-	fn3
DYD3_k127_328120_1	515635.Dtur_0573	1.367e-29	127.0	COG1086@1|root,COG1086@2|Bacteria	2|Bacteria	GM	Polysaccharide biosynthesis protein	pglF	GO:0008150,GO:0043900,GO:0043902,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:1900190,GO:1900192	4.2.1.115,4.2.1.135,4.2.1.46	ko:K01710,ko:K15894,ko:K15912,ko:K19421	ko00520,ko00521,ko00523,ko00525,ko01055,ko01130,map00520,map00521,map00523,map00525,map01055,map01130	M00793	R06513,R09697	RC00402,RC02609	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_binding_3,Polysacc_synt_2
DYD3_k127_328120_2	1410633.JHWR01000001_gene1434	4.265e-06	57.0	COG0463@1|root,COG0463@2|Bacteria,1VE8R@1239|Firmicutes,250DK@186801|Clostridia,27PZU@186928|unclassified Lachnospiraceae	186801|Clostridia	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_328120_0	272123.Anacy_0525	3.581e-41	161.0	COG0438@1|root,COG0438@2|Bacteria,1GC4D@1117|Cyanobacteria	1117|Cyanobacteria	M	PFAM Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4
DYD3_k127_3348758_4	1296416.JACB01000006_gene459	2.139e-07	57.0	COG2373@1|root,COG2373@2|Bacteria,4NSQZ@976|Bacteroidetes,1I45X@117743|Flavobacteriia,2YJ65@290174|Aquimarina	976|Bacteroidetes	S	Cytochrome oxidase complex assembly protein 1	-	-	-	-	-	-	-	-	-	-	-	-	Coa1
DYD3_k127_3348758_0	555778.Hneap_2062	6.91e-187	586.0	COG1222@1|root,COG1222@2|Bacteria,1NW63@1224|Proteobacteria,1SPBV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	O	aaa ATPase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3348758_2	1244869.H261_20734	2e-25	113.0	COG0457@1|root,COG0457@2|Bacteria,1Q5M4@1224|Proteobacteria,2UGJ0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2971)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2971
DYD3_k127_3348758_3	314287.GB2207_01327	1.409e-11	65.0	COG0370@1|root,COG0370@2|Bacteria,1MUZC@1224|Proteobacteria,1RME9@1236|Gammaproteobacteria,1J5MJ@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	P	Ferrous iron transport protein B	feoB	-	-	ko:K04759	-	-	-	-	ko00000,ko02000	9.A.8.1	-	-	FeoB_C,FeoB_N,Gate
DYD3_k127_3377769_0	410359.Pcal_1868	3.566e-24	102.0	arCOG05874@1|root,arCOG05874@2157|Archaea	2157|Archaea	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3377769_4	243230.DR_2252	8.214e-07	53.0	2ED08@1|root,33H8A@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3377769_6	1403948.Q618_VCMC00001G0529	0.0002798	43.0	2DX7X@1|root,32V2Y@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3393890_2	463191.SSEG_11130	5.917e-11	63.0	2EPJ6@1|root,33H5U@2|Bacteria,2IT42@201174|Actinobacteria	201174|Actinobacteria	S	Unextendable partial coding region	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3393890_0	926569.ANT_28270	1.464e-19	89.0	2DFYG@1|root,2ZTRA@2|Bacteria,2G9KK@200795|Chloroflexi	200795|Chloroflexi	J	Ribosomal protein S21	rpsU	-	-	ko:K02970	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S21
DYD3_k127_3393890_1	926569.ANT_28280	3.376e-17	81.0	COG0361@1|root,COG0361@2|Bacteria,2G7AQ@200795|Chloroflexi	200795|Chloroflexi	J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex	infA	-	-	ko:K02518	-	-	-	-	ko00000,ko03012	-	-	-	eIF-1a
DYD3_k127_3423904_3	1298864.AUEQ01000017_gene1303	3.648e-09	64.0	COG0500@1|root,COG2226@2|Bacteria,2GK7A@201174|Actinobacteria,234YU@1762|Mycobacteriaceae	201174|Actinobacteria	Q	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_3423904_2	1174528.JH992898_gene750	4.931e-13	75.0	COG3464@1|root,COG3464@2|Bacteria,1G0IQ@1117|Cyanobacteria,1JJ8N@1189|Stigonemataceae	1117|Cyanobacteria	L	Transposase	-	-	-	ko:K07485	-	-	-	-	ko00000	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
DYD3_k127_3423904_0	1499967.BAYZ01000048_gene2721	1.032e-53	198.0	COG3464@1|root,COG3464@2|Bacteria,2NRCT@2323|unclassified Bacteria	2|Bacteria	L	SPTR Transposase, IS204 IS1001 IS1096 IS1165 family protein	-	-	-	ko:K07485	-	-	-	-	ko00000	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
DYD3_k127_3423904_1	1173020.Cha6605_1785	5.99e-28	123.0	COG3385@1|root,2ZA2Q@2|Bacteria,1G4UP@1117|Cyanobacteria	1117|Cyanobacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1
DYD3_k127_3446577_1	1278307.KB906978_gene3828	1.53e-72	250.0	COG4714@1|root,COG4714@2|Bacteria,1N40I@1224|Proteobacteria,1S1R3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	membrane-anchored protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF2167
DYD3_k127_3446577_3	179408.Osc7112_3714	2.432e-51	184.0	COG4319@1|root,COG4319@2|Bacteria,1G9MH@1117|Cyanobacteria,1HCY6@1150|Oscillatoriales	1117|Cyanobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_3446577_0	316067.Geob_2091	1.322e-89	299.0	COG2320@1|root,COG2320@2|Bacteria,1RH46@1224|Proteobacteria,42TFI@68525|delta/epsilon subdivisions,2WP4H@28221|Deltaproteobacteria,43VWM@69541|Desulfuromonadales	28221|Deltaproteobacteria	S	GrpB protein	-	-	-	-	-	-	-	-	-	-	-	-	GrpB
DYD3_k127_3446577_2	83406.HDN1F_31400	1.886e-57	202.0	COG1487@1|root,COG1487@2|Bacteria,1MZB6@1224|Proteobacteria,1S3CW@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	-	-	-	ko:K18828	-	-	-	-	ko00000,ko01000,ko02048,ko03016	-	-	-	PIN
DYD3_k127_3446577_4	83406.HDN1F_31410	9.721e-26	108.0	COG4456@1|root,COG4456@2|Bacteria,1N7FM@1224|Proteobacteria,1SEGM@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Antidote-toxin recognition MazE, bacterial antitoxin	vapB1	-	-	ko:K18829	-	-	-	-	ko00000,ko02048	-	-	-	MazE_antitoxin
DYD3_k127_3451705_1	926569.ANT_14850	1.749e-05	48.0	COG2055@1|root,COG2055@2|Bacteria,2G6M2@200795|Chloroflexi	200795|Chloroflexi	C	Malate/L-lactate dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Ldh_2
DYD3_k127_3451705_0	247490.KSU1_B0100	6.644e-172	547.0	COG3385@1|root,COG3385@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF4372
DYD3_k127_3457795_1	415426.Hbut_0770	1.254e-35	142.0	COG0009@1|root,arCOG01952@2157|Archaea,2XPW0@28889|Crenarchaeota	28889|Crenarchaeota	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine	sua5	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363	2.7.7.87	ko:K07566	-	-	R10463	RC00745	ko00000,ko01000,ko03009,ko03016	-	-	-	SUA5,Sua5_yciO_yrdC
DYD3_k127_3457795_2	768066.HELO_1364	7.723e-05	49.0	COG4728@1|root,COG4728@2|Bacteria,1N6NP@1224|Proteobacteria,1SCKQ@1236|Gammaproteobacteria,1XM5W@135619|Oceanospirillales	135619|Oceanospirillales	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF1653
DYD3_k127_3457795_0	502025.Hoch_3495	2.204e-55	200.0	COG0122@1|root,COG0122@2|Bacteria,1MX9C@1224|Proteobacteria,42USD@68525|delta/epsilon subdivisions,2WQCM@28221|Deltaproteobacteria,2Z0PW@29|Myxococcales	28221|Deltaproteobacteria	L	endonuclease III	-	-	3.2.2.21	ko:K01247	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HhH-GPD
DYD3_k127_3465369_1	697282.Mettu_1512	2.746e-68	236.0	COG1941@1|root,COG1941@2|Bacteria,1NS0E@1224|Proteobacteria,1RW0G@1236|Gammaproteobacteria,1XDM0@135618|Methylococcales	135618|Methylococcales	C	PFAM NADH ubiquinone	-	-	1.12.1.2	ko:K18007	-	-	-	-	ko00000,ko01000	-	-	-	Oxidored_q6
DYD3_k127_3465369_0	675812.VHA_002732	1.509e-76	263.0	COG3383@1|root,COG3383@2|Bacteria,1MXTC@1224|Proteobacteria,1RZDX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	NADH ubiquinone oxidoreductase	-	-	1.12.1.2	ko:K18006,ko:K18007	-	-	-	-	ko00000,ko01000	-	-	-	Fer2_4,Fer4_15,NADH-G_4Fe-4S_3
DYD3_k127_3606750_2	1056820.KB900699_gene1255	0.0005102	43.0	COG3664@1|root,COG3693@1|root,COG5297@1|root,COG3664@2|Bacteria,COG3693@2|Bacteria,COG5297@2|Bacteria,1R7BZ@1224|Proteobacteria,1S17S@1236|Gammaproteobacteria,2PN39@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	G	Ca-dependent carbohydrate-binding module xylan-binding	-	-	-	-	-	-	-	-	-	-	-	-	CBM60,CBM_5_12_2,Glyco_hydro_10
DYD3_k127_3606750_0	1122194.AUHU01000002_gene2784	3.127e-70	239.0	COG0726@1|root,COG3693@1|root,COG5297@1|root,COG0726@2|Bacteria,COG3693@2|Bacteria,COG5297@2|Bacteria,1R8V3@1224|Proteobacteria,1RRR9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	G	Glycosyl hydrolase family 62	-	GO:0005575,GO:0005576	-	-	-	-	-	-	-	-	-	-	CBM_2,CBM_6,Glyco_hydro_62
DYD3_k127_3634525_0	1000565.METUNv1_02451	7.287e-29	118.0	COG0515@1|root,COG4252@1|root,COG0515@2|Bacteria,COG4252@2|Bacteria,1MV1P@1224|Proteobacteria,2VKJ8@28216|Betaproteobacteria,2KV51@206389|Rhodocyclales	206389|Rhodocyclales	KLT	Protein tyrosine kinase	-	-	2.7.11.1	ko:K12132	-	-	-	-	ko00000,ko01000,ko01001	-	-	-	CHASE2,Pkinase
DYD3_k127_3634624_0	1537994.JQFW01000032_gene1136	5.005e-82	280.0	2FCZU@1|root,3452F@2|Bacteria,1P17Y@1224|Proteobacteria,1SRCH@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3634624_1	399741.Spro_3879	7.628e-08	59.0	2B1QE@1|root,31U63@2|Bacteria,1QS0F@1224|Proteobacteria,1RVA9@1236|Gammaproteobacteria,405AY@613|Serratia	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3636913_2	1179773.BN6_24270	1.433e-12	72.0	COG1309@1|root,COG1309@2|Bacteria,2GYYS@201174|Actinobacteria,4E5SC@85010|Pseudonocardiales	201174|Actinobacteria	K	Tetracyclin repressor, C-terminal all-alpha domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C,TetR_N
DYD3_k127_3636913_1	1079460.ATTQ01000025_gene6273	7.542e-13	78.0	29AQW@1|root,2ZXQM@2|Bacteria,1P820@1224|Proteobacteria,2UXUK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3636913_0	502025.Hoch_0686	4.208e-115	395.0	COG3203@1|root,COG3203@2|Bacteria,1QVA0@1224|Proteobacteria,42P8X@68525|delta/epsilon subdivisions,2WM47@28221|Deltaproteobacteria,2YXTN@29|Myxococcales	28221|Deltaproteobacteria	M	SMART Integrin alpha beta-propellor repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	Cadherin-like,FG-GAP_2
DYD3_k127_3644763_1	281687.CJA38593	0.0001104	48.0	2E8JE@1|root,2TJWX@2759|Eukaryota,39GT4@33154|Opisthokonta,3CKMS@33208|Metazoa,3E282@33213|Bilateria,40PWB@6231|Nematoda,1M7DN@119089|Chromadorea,4160M@6236|Rhabditida	33208|Metazoa	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3658692_1	1150469.RSPPHO_03257	2.946e-18	84.0	2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria,2UJNP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3658692_3	244582.JQAK01000022_gene652	7.216e-13	68.0	2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3658692_2	1203606.HMPREF1526_02587	1.168e-14	76.0	2DPDN@1|root,331NP@2|Bacteria,1VFF8@1239|Firmicutes,24S9D@186801|Clostridia,36VF0@31979|Clostridiaceae	186801|Clostridia	S	ORF located using Blastx	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3658692_0	1029823.AFIE01000115_gene1030	7.232e-32	125.0	2E4EA@1|root,32Z9I@2|Bacteria,1N7HE@1224|Proteobacteria,1SDU5@1236|Gammaproteobacteria,3NP71@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3720126_1	1069080.KB913028_gene217	2.945e-08	55.0	2DREN@1|root,33BEG@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3720126_3	1344012.ATMI01000033_gene2843	0.0006317	43.0	2E4EA@1|root,32Z9I@2|Bacteria,1N7HE@1224|Proteobacteria,1SDU5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3720204_1	1196083.SALWKB12_0531	1.235e-31	140.0	COG3210@1|root,COG3210@2|Bacteria,1MX2K@1224|Proteobacteria	1224|Proteobacteria	U	Large exoproteins involved in heme utilization or adhesion	-	-	-	ko:K15125	ko05133,map05133	-	-	-	ko00000,ko00001,ko00536	-	-	-	Fil_haemagg_2,Haemagg_act,PT-VENN
DYD3_k127_3720204_2	291112.PAU_03360	5.071e-29	119.0	2E13J@1|root,32WIZ@2|Bacteria,1N6F6@1224|Proteobacteria,1SNQV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3720204_0	1219077.VAZ01S_012_00350	3.829e-71	244.0	COG1859@1|root,COG1859@2|Bacteria,1RD8B@1224|Proteobacteria,1S3U6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	J	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase	kptA	GO:0003674,GO:0003824,GO:0016740,GO:0016772	-	ko:K07559	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	PTS_2-RNA
DYD3_k127_3793182_0	1499967.BAYZ01000048_gene2721	1.895e-40	159.0	COG3464@1|root,COG3464@2|Bacteria,2NRCT@2323|unclassified Bacteria	2|Bacteria	L	SPTR Transposase, IS204 IS1001 IS1096 IS1165 family protein	-	-	-	ko:K07485	-	-	-	-	ko00000	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
DYD3_k127_3793182_2	32057.KB217478_gene3219	9.191e-12	72.0	COG3464@1|root,COG3464@2|Bacteria,1G0IQ@1117|Cyanobacteria,1HK29@1161|Nostocales	1117|Cyanobacteria	L	PFAM Transposase, IS204 IS1001 IS1096 IS1165	-	-	-	ko:K07485	-	-	-	-	ko00000	-	-	-	DDE_Tnp_ISL3,HTH_Tnp_ISL3,zf-ISL3
DYD3_k127_3793182_1	443144.GM21_3869	5.637e-24	104.0	2E8MZ@1|root,332ZD@2|Bacteria,1P763@1224|Proteobacteria,432M3@68525|delta/epsilon subdivisions,2WXF5@28221|Deltaproteobacteria	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3818700_0	246194.CHY_1168	1.65e-131	436.0	COG1418@1|root,COG1418@2|Bacteria,1TP48@1239|Firmicutes,248G8@186801|Clostridia,42F5Q@68295|Thermoanaerobacterales	186801|Clostridia	D	Endoribonuclease that initiates mRNA decay	rny	-	-	ko:K18682	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	DUF3552,HD,KH_1
DYD3_k127_3818700_2	1230343.CANP01000030_gene2331	1.211e-40	156.0	COG0077@1|root,COG0077@2|Bacteria,1PK3E@1224|Proteobacteria,1RXS0@1236|Gammaproteobacteria,1JDA9@118969|Legionellales	118969|Legionellales	E	Prephenate dehydratase	-	-	4.2.1.51	ko:K04518	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024	R00691,R01373	RC00360	ko00000,ko00001,ko00002,ko01000	-	-	-	PDT
DYD3_k127_3818700_3	1279038.KB907341_gene1978	1.744e-22	99.0	COG0776@1|root,COG0776@2|Bacteria,1MZ5B@1224|Proteobacteria,2UC5G@28211|Alphaproteobacteria,2JTCN@204441|Rhodospirillales	204441|Rhodospirillales	L	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	-	-	-	ko:K03530	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_3818700_1	1191523.MROS_1785	6.637e-112	376.0	COG2256@1|root,COG2256@2|Bacteria	2|Bacteria	L	atpase related to the helicase subunit of the holliday junction resolvase	rarA	-	-	ko:K07478	-	-	-	-	ko00000	-	-	-	AAA,AAA_assoc_2,MgsA_C,RuvB_N
DYD3_k127_3818700_4	272844.PAB1301	4.83e-09	68.0	COG0438@1|root,arCOG01403@2157|Archaea,2XUSA@28890|Euryarchaeota,243JQ@183968|Thermococci	183968|Thermococci	M	Glycosyl transferase 4-like	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_3829859_0	485915.Dret_0923	1.506e-55	200.0	COG0697@1|root,COG0697@2|Bacteria,1Q9QV@1224|Proteobacteria,43293@68525|delta/epsilon subdivisions,2WXT3@28221|Deltaproteobacteria	28221|Deltaproteobacteria	EG	spore germination	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3829859_1	485913.Krac_7095	2.802e-53	201.0	COG5433@1|root,COG5433@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_assoc
DYD3_k127_3862395_0	485913.Krac_1959	2.488e-55	199.0	COG3335@1|root,COG3335@2|Bacteria	2|Bacteria	L	DDE superfamily endonuclease	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3,HTH_23,HTH_32,HTH_33
DYD3_k127_3862395_1	485913.Krac_9148	1.782e-38	151.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3,HTH_23,HTH_32,HTH_33
DYD3_k127_3934930_2	1401065.HMPREF2130_10960	1.453e-17	92.0	28PTM@1|root,2ZCEU@2|Bacteria,1R5DD@1224|Proteobacteria,2W259@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Family of unknown function (DUF5309)	-	-	-	-	-	-	-	-	-	-	-	-	DUF5309
DYD3_k127_3934930_0	1117108.PAALTS15_08374	3.193e-24	118.0	COG0457@1|root,COG0463@1|root,COG0457@2|Bacteria,COG0463@2|Bacteria,1TQEM@1239|Firmicutes,4H9X9@91061|Bacilli,26RHS@186822|Paenibacillaceae	91061|Bacilli	M	involved in cell wall biogenesis	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2,TPR_8
DYD3_k127_3934930_1	164328.Phyra94933	2.501e-18	99.0	COG3914@1|root,KOG4626@2759|Eukaryota,3QC0T@4776|Peronosporales	4776|Peronosporales	GOT	Glycosyl transferase family 41	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_41,TPR_16
DYD3_k127_3938407_0	1469607.KK073768_gene1009	5.554e-126	419.0	COG3039@1|root,COG3039@2|Bacteria,1G3YX@1117|Cyanobacteria	1117|Cyanobacteria	L	COG3039 Transposase and inactivated derivatives, IS5 family	-	-	-	ko:K07481	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DUF772
DYD3_k127_3938407_2	1128421.JAGA01000001_gene2283	2.808e-19	92.0	COG2909@1|root,COG2909@2|Bacteria	2|Bacteria	K	trisaccharide binding	-	-	-	-	-	-	-	-	-	-	-	-	GerE
DYD3_k127_3938407_1	1196323.ALKF01000181_gene1630	7.43e-25	113.0	COG1266@1|root,COG1266@2|Bacteria,1V416@1239|Firmicutes,4HRGM@91061|Bacilli,26ZGM@186822|Paenibacillaceae	91061|Bacilli	S	CAAX protease self-immunity	-	-	-	-	-	-	-	-	-	-	-	-	Abi
DYD3_k127_3946858_2	909663.KI867150_gene1042	2.944e-21	94.0	COG0378@1|root,COG0378@2|Bacteria,1MVBD@1224|Proteobacteria,42MMJ@68525|delta/epsilon subdivisions,2WK7X@28221|Deltaproteobacteria,2MRSA@213462|Syntrophobacterales	28221|Deltaproteobacteria	KO	CobW/HypB/UreG, nucleotide-binding domain	hypB	-	-	ko:K04652	-	-	-	-	ko00000,ko03110	-	-	-	cobW
DYD3_k127_3946858_4	1333507.AUTQ01000265_gene2840	0.0001615	51.0	COG3637@1|root,COG3637@2|Bacteria,1N3BJ@1224|Proteobacteria,1SFEZ@1236|Gammaproteobacteria,2Q1BE@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	M	OmpA-like transmembrane domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA_membrane
DYD3_k127_3946858_1	1123393.KB891329_gene1019	3.494e-35	143.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,2VW6N@28216|Betaproteobacteria	28216|Betaproteobacteria	M	RHS protein	-	-	-	-	-	-	-	-	-	-	-	-	GH-E,PAAR_motif,RHS,RHS_repeat
DYD3_k127_3946858_0	1123392.AQWL01000001_gene1620	4.104e-48	184.0	COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,2W9ZC@28216|Betaproteobacteria,1KRZX@119069|Hydrogenophilales	119069|Hydrogenophilales	M	RHS protein	-	-	-	-	-	-	-	-	-	-	-	-	RHS,RHS_repeat
DYD3_k127_3955758_7	2423.NA23_0202885	7.994e-09	61.0	COG0268@1|root,COG0268@2|Bacteria,2GDFA@200918|Thermotogae	200918|Thermotogae	J	Binds directly to 16S ribosomal RNA	rpsT	-	-	ko:K02968	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S20p
DYD3_k127_3955758_5	649743.HMPREF0972_02027	4.466e-28	121.0	COG0632@1|root,COG0632@2|Bacteria,2GN17@201174|Actinobacteria,4D4PS@85005|Actinomycetales	201174|Actinobacteria	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	ruvA	GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009378,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0031668,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360	3.6.4.12	ko:K03550	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HHH_5,RuvA_C,RuvA_N
DYD3_k127_3955758_3	944564.HMPREF9200_0351	1.614e-59	224.0	COG0769@1|root,COG0769@2|Bacteria,1TPQE@1239|Firmicutes,4H2VD@909932|Negativicutes	909932|Negativicutes	M	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan	murE	-	6.3.2.10,6.3.2.13	ko:K01928,ko:K15792	ko00300,ko00550,map00300,map00550	-	R02788,R04617	RC00064,RC00090,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_3955758_0	553184.ATORI0001_0157	7.395e-142	480.0	COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,2GJY2@201174|Actinobacteria,4CUSF@84998|Coriobacteriia	84998|Coriobacteriia	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	polA	-	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	-	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	5_3_exonuc,5_3_exonuc_N,DNA_pol_A
DYD3_k127_3955758_6	1123250.KB908389_gene2086	7.267e-18	89.0	COG0802@1|root,COG0802@2|Bacteria,1V6CV@1239|Firmicutes,4H4ZR@909932|Negativicutes	909932|Negativicutes	S	Hydrolase, P-loop family	yjeE	-	-	ko:K06925	-	-	-	-	ko00000,ko03016	-	-	-	TsaE
DYD3_k127_3955758_2	1278307.KB906982_gene3961	1.845e-98	344.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,1RMBS@1236|Gammaproteobacteria	1236|Gammaproteobacteria	NU	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB	mshE	-	-	ko:K12276	ko05111,map05111	-	-	-	ko00000,ko00001,ko02044	-	-	-	T2SSE,T2SSE_N
DYD3_k127_3955758_1	457570.Nther_1796	4.506e-101	342.0	COG2255@1|root,COG2255@2|Bacteria,1TR47@1239|Firmicutes,247W0@186801|Clostridia	186801|Clostridia	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing	ruvB	-	3.6.4.12	ko:K03551	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvB_C,RuvB_N
DYD3_k127_3955758_4	1411123.JQNH01000001_gene2523	1.002e-30	128.0	COG0217@1|root,COG0217@2|Bacteria,1MW3X@1224|Proteobacteria,2TRSK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulatory protein	MA20_17930	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	Transcrip_reg
DYD3_k127_3980191_18	1121104.AQXH01000001_gene1644	2.056e-47	181.0	COG0566@1|root,COG0566@2|Bacteria,4NF6H@976|Bacteroidetes	976|Bacteroidetes	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family	trmH	-	2.1.1.185	ko:K03218,ko:K03437	-	-	-	-	ko00000,ko01000,ko03009,ko03016	-	-	-	SpoU_methylase,SpoU_sub_bind
DYD3_k127_3980191_8	1123229.AUBC01000003_gene2044	2.552e-77	268.0	COG1092@1|root,COG1092@2|Bacteria,1QSD4@1224|Proteobacteria,2TUFT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Belongs to the methyltransferase superfamily	rlmI	-	2.1.1.191	ko:K06969	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Cons_hypoth95,Methyltrans_SAM
DYD3_k127_3980191_17	557598.LHK_01266	1.127e-48	185.0	COG2404@1|root,COG2404@2|Bacteria,1MXEH@1224|Proteobacteria,2VKWK@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Phosphoesterase DHHA1	-	-	-	-	-	-	-	-	-	-	-	-	DHHA1
DYD3_k127_3980191_9	224324.aq_801	2.623e-74	265.0	COG0533@1|root,COG0533@2|Bacteria,2G3KK@200783|Aquificae	200783|Aquificae	O	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction	tsaD	GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360	2.3.1.234	ko:K01409	-	-	R10648	RC00070,RC00416	ko00000,ko01000,ko03016	-	-	-	Peptidase_M22
DYD3_k127_3980191_2	309801.trd_1512	5.169e-191	620.0	COG0525@1|root,COG0525@2|Bacteria,2G5VS@200795|Chloroflexi,27Y20@189775|Thermomicrobia	189775|Thermomicrobia	J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner	valS	-	6.1.1.9	ko:K01873	ko00970,map00970	M00359,M00360	R03665	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1
DYD3_k127_3980191_40	1423321.AS29_11355	0.0002978	51.0	COG2339@1|root,COG2339@2|Bacteria,1UZGQ@1239|Firmicutes,4HCGD@91061|Bacilli,1ZBUQ@1386|Bacillus	91061|Bacilli	S	Involved in the degradation of specific anti-sigma factors	prsW	-	-	-	-	-	-	-	-	-	-	-	PrsW-protease
DYD3_k127_3980191_30	323261.Noc_1573	8.72e-18	90.0	COG0071@1|root,COG0071@2|Bacteria,1N7C7@1224|Proteobacteria,1S7QZ@1236|Gammaproteobacteria,1WYRM@135613|Chromatiales	135613|Chromatiales	O	Belongs to the small heat shock protein (HSP20) family	-	-	-	ko:K13993	ko04141,map04141	-	-	-	ko00000,ko00001,ko03110	-	-	-	HSP20
DYD3_k127_3980191_19	518766.Rmar_0714	2.814e-47	184.0	28IX1@1|root,2Z8V3@2|Bacteria,4NHFP@976|Bacteroidetes,1FJ3K@1100069|Bacteroidetes Order II. Incertae sedis	976|Bacteroidetes	S	Protein of unknown function (DUF2914)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2914
DYD3_k127_3980191_28	660470.Theba_1526	6.408e-21	94.0	COG0695@1|root,COG0695@2|Bacteria,2GD7W@200918|Thermotogae	200918|Thermotogae	O	glutaredoxin-like protein, YruB-family	-	-	-	-	-	-	-	-	-	-	-	-	Glutaredoxin
DYD3_k127_3980191_4	518766.Rmar_2045	7.841e-177	572.0	COG0481@1|root,COG0481@2|Bacteria,4NEJ9@976|Bacteroidetes,1FIPT@1100069|Bacteroidetes Order II. Incertae sedis	976|Bacteroidetes	J	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	lepA	-	-	ko:K03596	ko05134,map05134	-	-	-	ko00000,ko00001	-	-	-	EFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C
DYD3_k127_3980191_26	1382356.JQMP01000003_gene2578	1.663e-26	125.0	COG0728@1|root,COG0728@2|Bacteria,2G5MD@200795|Chloroflexi,27XGY@189775|Thermomicrobia	189775|Thermomicrobia	S	Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane	-	-	-	ko:K03980	-	-	-	-	ko00000,ko01011,ko02000	2.A.66.4	-	-	MVIN
DYD3_k127_3980191_35	927677.ALVU02000001_gene2455	8.763e-08	66.0	COG0457@1|root,COG0457@2|Bacteria,1G0BJ@1117|Cyanobacteria,1H5C0@1142|Synechocystis	1117|Cyanobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_8
DYD3_k127_3980191_0	1519464.HY22_07965	1.246e-316	987.0	COG0209@1|root,COG0209@2|Bacteria	2|Bacteria	F	ribonucleoside-diphosphate reductase activity	rtpR	-	1.1.98.6,1.17.4.1	ko:K00525,ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024,R11633,R11634,R11635,R11636	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	ATP-cone,LAGLIDADG_3,Ribonuc_red_lgC
DYD3_k127_3980191_33	309803.CTN_0719	5.852e-15	81.0	COG1430@1|root,COG1430@2|Bacteria,2GE5H@200918|Thermotogae	200918|Thermotogae	S	Uncharacterized ACR, COG1430	-	-	-	ko:K09005	-	-	-	-	ko00000	-	-	-	DUF192
DYD3_k127_3980191_21	885272.JonanDRAFT_0223	3.562e-42	164.0	COG0307@1|root,COG0307@2|Bacteria,3TB1C@508458|Synergistetes	508458|Synergistetes	H	riboflavin synthase, alpha subunit	ribE	-	2.5.1.9	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00066	RC00958,RC00960	ko00000,ko00001,ko00002,ko01000	-	-	-	Lum_binding
DYD3_k127_3980191_32	314287.GB2207_05347	8.973e-16	82.0	COG0196@1|root,COG0196@2|Bacteria,1MV9I@1224|Proteobacteria,1RN44@1236|Gammaproteobacteria,1J587@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	H	Belongs to the ribF family	ribF	GO:0003674,GO:0003824,GO:0003919,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008531,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0044237,GO:0070566	2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	iETEC_1333.ETEC_0025,iJN746.PP_0602	FAD_syn,Flavokinase
DYD3_k127_3980191_7	511051.CSE_06310	4.236e-82	282.0	COG0501@1|root,COG0501@2|Bacteria	2|Bacteria	O	metalloendopeptidase activity	htpX	-	-	ko:K03799	-	M00743	-	-	ko00000,ko00002,ko01000,ko01002	-	-	-	DUF3318,Peptidase_M48
DYD3_k127_3980191_38	1211777.BN77_1340	0.0001756	51.0	COG3152@1|root,COG3152@2|Bacteria,1MZJ4@1224|Proteobacteria,2UG35@28211|Alphaproteobacteria,4BFJ1@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF805)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4339,DUF805
DYD3_k127_3980191_24	330214.NIDE3501	1.095e-29	137.0	COG4907@1|root,COG4907@2|Bacteria	2|Bacteria	P	membrane protein (DUF2207)	yciQ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	DUF2207
DYD3_k127_3980191_12	1304888.ATWF01000001_gene2419	4.363e-57	205.0	COG1704@1|root,COG1704@2|Bacteria,2GFE4@200930|Deferribacteres	200930|Deferribacteres	S	LemA family	-	-	-	ko:K03744	-	-	-	-	ko00000	-	-	-	LemA
DYD3_k127_3980191_3	696281.Desru_0758	1.945e-177	571.0	COG0459@1|root,COG0459@2|Bacteria,1TP1T@1239|Firmicutes,248BG@186801|Clostridia,2611G@186807|Peptococcaceae	186801|Clostridia	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD3_k127_3980191_27	326424.FRAAL1133	1.44e-25	109.0	COG0234@1|root,COG0234@2|Bacteria,2IKTH@201174|Actinobacteria,4ET07@85013|Frankiales	201174|Actinobacteria	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	groS	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019899,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0035375,GO:0035966,GO:0040007,GO:0042221,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065007,GO:0071944,GO:0080090,GO:1903506,GO:2000112,GO:2001141	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
DYD3_k127_3980191_36	485913.Krac_8434	1.135e-07	56.0	COG1314@1|root,COG1314@2|Bacteria	2|Bacteria	U	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	secG	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680	-	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecG
DYD3_k127_3980191_10	479434.Sthe_1249	9.564e-70	258.0	COG0747@1|root,COG0747@2|Bacteria,2G5NC@200795|Chloroflexi,27XPP@189775|Thermomicrobia	189775|Thermomicrobia	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
DYD3_k127_3980191_5	1487921.DP68_06010	1.027e-127	431.0	COG0595@1|root,COG0595@2|Bacteria,1TQ9G@1239|Firmicutes,2488J@186801|Clostridia,36DE5@31979|Clostridiaceae	186801|Clostridia	S	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay	rnj	-	-	ko:K12574	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	Lactamase_B,RMMBL
DYD3_k127_3980191_39	797304.Natgr_1753	0.0002336	53.0	COG0477@1|root,arCOG00132@2157|Archaea,2Y8EM@28890|Euryarchaeota,2419S@183963|Halobacteria	183963|Halobacteria	G	COG0477 Permeases of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_3980191_11	906968.Trebr_1529	1.739e-65	233.0	COG1194@1|root,COG1194@2|Bacteria,2J5B8@203691|Spirochaetes	203691|Spirochaetes	L	A G-specific	-	-	-	ko:K03575	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HhH-GPD
DYD3_k127_3980191_23	1415775.U729_2046	6.123e-31	130.0	COG0560@1|root,COG0560@2|Bacteria,1UYZ6@1239|Firmicutes,24AC7@186801|Clostridia,36EAG@31979|Clostridiaceae	186801|Clostridia	E	HAD-superfamily subfamily IB hydrolase	serB	-	-	-	-	-	-	-	-	-	-	-	HAD
DYD3_k127_3980191_20	1121406.JAEX01000001_gene433	2.126e-46	175.0	COG0177@1|root,COG0177@2|Bacteria,1MUYQ@1224|Proteobacteria,42N6I@68525|delta/epsilon subdivisions,2WNYM@28221|Deltaproteobacteria,2MG63@213115|Desulfovibrionales	28221|Deltaproteobacteria	L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate	nth	-	4.2.99.18	ko:K10773	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	EndIII_4Fe-2S,HhH-GPD
DYD3_k127_3980191_15	945713.IALB_1337	1.036e-55	199.0	COG1225@1|root,COG1225@2|Bacteria	2|Bacteria	O	peroxiredoxin activity	bcp	GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748	1.11.1.15	ko:K03564	-	-	-	-	ko00000,ko01000	-	-	-	AhpC-TSA
DYD3_k127_3980191_34	309801.trd_1327	1.467e-12	79.0	COG1664@1|root,COG1664@2|Bacteria,2G79N@200795|Chloroflexi,27Y9Z@189775|Thermomicrobia	189775|Thermomicrobia	M	Polymer-forming cytoskeletal	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3980191_37	118173.KB235914_gene2470	7.264e-07	58.0	COG4243@1|root,COG4243@2|Bacteria,1FZWT@1117|Cyanobacteria,1H90D@1150|Oscillatoriales	1117|Cyanobacteria	CO	Vitamin k epoxide reductase	-	-	-	-	-	-	-	-	-	-	-	-	VKOR
DYD3_k127_3980191_16	1283299.AUKG01000002_gene5307	7.963e-50	183.0	COG0229@1|root,COG0229@2|Bacteria,2IHV0@201174|Actinobacteria,4CQBG@84995|Rubrobacteria	84995|Rubrobacteria	O	Belongs to the MsrB Met sulfoxide reductase family	msrB	-	1.8.4.12	ko:K07305	-	-	-	-	ko00000,ko01000	-	-	-	SelR
DYD3_k127_3980191_22	1121440.AUMA01000009_gene734	2.058e-39	156.0	COG2859@1|root,COG2859@2|Bacteria,1NBCQ@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF541)	-	-	-	-	-	-	-	-	-	-	-	-	SIMPL
DYD3_k127_3980191_13	1382359.JIAL01000001_gene469	1.736e-56	201.0	COG0225@1|root,COG0225@2|Bacteria,3Y4DM@57723|Acidobacteria,2JJ10@204432|Acidobacteriia	204432|Acidobacteriia	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	-	-	1.8.4.11	ko:K07304	-	-	-	-	ko00000,ko01000	-	-	-	PMSR
DYD3_k127_3980191_29	187303.BN69_3282	7.686e-20	94.0	2DRG5@1|root,33BKC@2|Bacteria,1NHF2@1224|Proteobacteria,2UNDF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4383)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4383
DYD3_k127_3980191_14	163908.KB235896_gene4012	1.967e-56	205.0	COG0586@1|root,COG0586@2|Bacteria,1G4C6@1117|Cyanobacteria,1HIII@1161|Nostocales	1117|Cyanobacteria	S	SNARE associated Golgi protein	-	-	-	ko:K03975	-	-	-	-	ko00000	-	-	-	SNARE_assoc
DYD3_k127_3980191_31	743719.PaelaDRAFT_1354	4.562e-17	88.0	COG2259@1|root,COG2259@2|Bacteria,1VCS2@1239|Firmicutes,4HKRK@91061|Bacilli,26YZ6@186822|Paenibacillaceae	91061|Bacilli	S	membrane	yfiD3	-	-	-	-	-	-	-	-	-	-	-	DoxX
DYD3_k127_3980191_25	1227457.C451_08208	3.506e-27	120.0	COG1651@1|root,arCOG02868@2157|Archaea,2XVKP@28890|Euryarchaeota,23U3I@183963|Halobacteria	183963|Halobacteria	O	COG1651 Protein-disulfide isomerase	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_4
DYD3_k127_3980191_6	749222.Nitsa_1507	2.175e-95	328.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,42MGZ@68525|delta/epsilon subdivisions,2YMN1@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	L	Belongs to the DEAD box helicase family	rhlE	-	3.6.4.13	ko:K11927	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	DEAD,Helicase_C
DYD3_k127_3980191_1	706587.Desti_0934	1.129e-247	777.0	COG1217@1|root,COG1217@2|Bacteria,1MV5Q@1224|Proteobacteria,42M3S@68525|delta/epsilon subdivisions,2WJVZ@28221|Deltaproteobacteria,2MR4W@213462|Syntrophobacterales	28221|Deltaproteobacteria	T	Elongation factor Tu domain 2	typA	-	-	ko:K06207	-	-	-	-	ko00000	-	-	-	EFG_C,GTP_EFTU,GTP_EFTU_D2
DYD3_k127_4016111_0	658187.LDG_8434	1.234e-87	304.0	COG3385@1|root,COG3385@2|Bacteria,1R55Y@1224|Proteobacteria,1RRSD@1236|Gammaproteobacteria,1JGPP@118969|Legionellales	118969|Legionellales	L	Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1
DYD3_k127_4016111_2	90814.KL370891_gene982	3.564e-21	94.0	COG1943@1|root,COG1943@2|Bacteria,1P19I@1224|Proteobacteria,1S7G4@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	PFAM Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_4016111_1	933262.AXAM01000181_gene2999	7.237e-55	197.0	COG1943@1|root,COG1943@2|Bacteria,1P19I@1224|Proteobacteria,42PP3@68525|delta/epsilon subdivisions,2WK0G@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_4021011_2	1121406.JAEX01000002_gene972	4.829e-12	69.0	COG0599@1|root,COG0599@2|Bacteria,1N38Z@1224|Proteobacteria,42WA7@68525|delta/epsilon subdivisions,2WRWX@28221|Deltaproteobacteria,2MCC2@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_4021011_0	377629.TERTU_1483	3.249e-27	113.0	COG3866@1|root,COG3866@2|Bacteria,1QPFF@1224|Proteobacteria,1RQEM@1236|Gammaproteobacteria,2PMMI@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	G	Amb_all	-	-	-	-	-	-	-	-	-	-	-	-	CBM_35,CBM_5_12_2,CBM_6,Pec_lyase_C,RicinB_lectin_2
DYD3_k127_4034672_3	330214.NIDE2938	0.0003718	44.0	290W2@1|root,2ZNHX@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4034672_2	330214.NIDE2938	1.743e-15	79.0	290W2@1|root,2ZNHX@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4034672_1	944479.JQLX01000011_gene832	8.38e-20	96.0	COG0507@1|root,COG0782@1|root,COG1112@1|root,COG0507@2|Bacteria,COG0782@2|Bacteria,COG1112@2|Bacteria,1MWMG@1224|Proteobacteria,42PMB@68525|delta/epsilon subdivisions,2WJR9@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	COG1112 Superfamily I DNA and RNA helicases and helicase subunits	-	-	-	-	-	-	-	-	-	-	-	-	AAA_11,AAA_12,DUF3320,DUF4011,DUF559
DYD3_k127_4034672_0	1122194.AUHU01000003_gene2391	2.216e-78	266.0	COG0577@1|root,COG0577@2|Bacteria,1MX7X@1224|Proteobacteria,1RRH7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	ABC-type antimicrobial peptide transport system, permease component	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_4062870_0	323098.Nwi_1618	2.769e-07	63.0	2DQJ1@1|root,3376F@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Beta_helix,Pectate_lyase_3
DYD3_k127_4083073_0	7029.ACYPI43081-PA	2.217e-23	114.0	2E7Y8@1|root,2SEGA@2759|Eukaryota	2759|Eukaryota	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_7
DYD3_k127_4116017_6	1307759.JOMJ01000004_gene2828	3.767e-12	68.0	2C8XG@1|root,2Z7PK@2|Bacteria,1RA5I@1224|Proteobacteria,42QRD@68525|delta/epsilon subdivisions,2WMYW@28221|Deltaproteobacteria,2MC9C@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	Protein of unknown function (DUF4197)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4197
DYD3_k127_4116017_2	1307437.J139_02830	1.336e-46	178.0	COG0457@1|root,COG0457@2|Bacteria,1QXRG@1224|Proteobacteria,1T3HP@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF2971)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2971
DYD3_k127_4116017_7	1131462.DCF50_p1711	5.014e-08	61.0	2D5JP@1|root,32TJ9@2|Bacteria,1VDKP@1239|Firmicutes,24ZYV@186801|Clostridia,264C5@186807|Peptococcaceae	186801|Clostridia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4116017_0	1385517.N800_12650	1.44e-82	277.0	28NG2@1|root,2ZBI9@2|Bacteria,1R98N@1224|Proteobacteria,1RYRF@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4116017_1	1387312.BAUS01000007_gene2486	2.044e-53	194.0	COG4106@1|root,COG4106@2|Bacteria,1R14J@1224|Proteobacteria	1224|Proteobacteria	S	O-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_4116017_5	377629.TERTU_3684	6.116e-13	68.0	COG0479@1|root,COG0479@2|Bacteria,1MVHS@1224|Proteobacteria,1S1ME@1236|Gammaproteobacteria,2PPWT@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	C	2Fe-2S iron-sulfur cluster binding domain	frdB	-	1.3.5.4	ko:K00245	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	M00009,M00011,M00150,M00173	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_3,Fer4_8
DYD3_k127_4142812_3	1219065.VPR01S_14_00030	3.805e-50	181.0	COG0346@1|root,COG0346@2|Bacteria,1N2SB@1224|Proteobacteria,1SA4P@1236|Gammaproteobacteria,1XY9F@135623|Vibrionales	135623|Vibrionales	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_4142812_7	314278.NB231_02318	9.555e-34	133.0	COG1943@1|root,COG1943@2|Bacteria,1RBFM@1224|Proteobacteria,1SPM8@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	Transposase IS200 like	-	-	-	-	-	-	-	-	-	-	-	-	Y1_Tnp
DYD3_k127_4142812_9	525897.Dbac_2564	6.116e-14	76.0	COG1943@1|root,COG1943@2|Bacteria,1RBFM@1224|Proteobacteria,42QPI@68525|delta/epsilon subdivisions,2WMUC@28221|Deltaproteobacteria,2MEYV@213115|Desulfovibrionales	28221|Deltaproteobacteria	L	Transposase	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_4142812_0	382464.ABSI01000020_gene281	1.78e-71	252.0	COG2819@1|root,COG2819@2|Bacteria	2|Bacteria	S	hydrolase activity, acting on ester bonds	-	-	-	ko:K07017	-	-	-	-	ko00000	-	-	-	Esterase
DYD3_k127_4142812_8	243231.GSU1541	2.551e-24	103.0	COG1943@1|root,COG1943@2|Bacteria,1RBFM@1224|Proteobacteria,42QPI@68525|delta/epsilon subdivisions,2WMUC@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	Transposase	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_4142812_5	395961.Cyan7425_0297	1.25e-46	179.0	COG1520@1|root,COG1520@2|Bacteria,1G342@1117|Cyanobacteria	1117|Cyanobacteria	O	PFAM Beta-propeller repeat	-	-	-	-	-	-	-	-	-	-	-	-	Calx-beta,DUF4114,P_proprotein,Peptidase_S8,SBBP
DYD3_k127_4142812_10	118161.KB235922_gene558	1.25e-08	61.0	COG1520@1|root,COG1520@2|Bacteria,1G342@1117|Cyanobacteria,3VNN2@52604|Pleurocapsales	1117|Cyanobacteria	V	Beta-propeller repeat	-	-	-	-	-	-	-	-	-	-	-	-	Calx-beta,DUF4114,P_proprotein,Peptidase_S8,SBBP
DYD3_k127_4142812_1	1434325.AZQN01000009_gene3993	4.602e-66	244.0	COG4636@1|root,COG4636@2|Bacteria,4NFKR@976|Bacteroidetes,47K44@768503|Cytophagia	976|Bacteroidetes	S	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	-	-	-	-	-	-	-	-	-	-	-	-	VCBS
DYD3_k127_4142812_4	913325.N799_13820	1.66e-47	173.0	COG1359@1|root,COG1359@2|Bacteria,1Q8JN@1224|Proteobacteria,1SPWE@1236|Gammaproteobacteria,1XBB5@135614|Xanthomonadales	135614|Xanthomonadales	S	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4142812_2	1173024.KI912148_gene4398	1.816e-59	211.0	COG2020@1|root,COG2020@2|Bacteria,1GB2G@1117|Cyanobacteria	1117|Cyanobacteria	O	Isoprenylcysteine carboxyl methyltransferase (ICMT) family	-	-	-	-	-	-	-	-	-	-	-	-	PEMT
DYD3_k127_4142812_6	1117319.PSPO_07819	4.729e-46	169.0	2E083@1|root,32VVX@2|Bacteria,1N26N@1224|Proteobacteria,1T14P@1236|Gammaproteobacteria,2Q4K8@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_6	485913.Krac_10545	1.253e-65	232.0	COG0528@1|root,COG0528@2|Bacteria	2|Bacteria	F	UMP kinase activity	mosB	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0030151,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914	2.7.4.22	ko:K00947,ko:K09903	ko00240,ko01100,map00240,map01100	-	R00158	RC00002	ko00000,ko00001,ko01000	-	-	-	AA_kinase
DYD3_k127_419386_11	1027273.GZ77_10270	1.273e-30	126.0	COG0615@1|root,COG0615@2|Bacteria	2|Bacteria	H	ADP-L-glycero-beta-D-manno-heptose biosynthetic process	-	-	2.7.7.39	ko:K00980	ko00564,map00564	-	R00856	RC00002	ko00000,ko00001,ko01000	-	-	-	CTP_transf_like
DYD3_k127_419386_24	1193181.BN10_1300016	1.949e-05	49.0	2DSQW@1|root,33H3S@2|Bacteria,2GTIV@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_14	1284352.AOIG01000064_gene935	6.695e-20	91.0	2DPM9@1|root,332MQ@2|Bacteria,1VGFB@1239|Firmicutes,4IAYB@91061|Bacilli,273DA@186822|Paenibacillaceae	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_21	411467.BACCAP_03831	1.039e-09	59.0	2AEH5@1|root,314CE@2|Bacteria,1VM56@1239|Firmicutes,24XBZ@186801|Clostridia	186801|Clostridia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_25	1444711.CCJF01000005_gene1450	3.657e-05	46.0	2E4EA@1|root,32Z9I@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_22	1123008.KB905692_gene421	1.712e-08	57.0	2DMHR@1|root,32RMI@2|Bacteria,4NUR9@976|Bacteroidetes,2FT84@200643|Bacteroidia,230K6@171551|Porphyromonadaceae	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_20	66377.JOBH01000013_gene1855	7.257e-10	68.0	COG3415@1|root,COG3415@2|Bacteria,2HK0D@201174|Actinobacteria	201174|Actinobacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23,Terminase_5
DYD3_k127_419386_19	443143.GM18_4097	1.654e-10	67.0	COG1051@1|root,COG1051@2|Bacteria,1MWNH@1224|Proteobacteria,42T59@68525|delta/epsilon subdivisions,2WPMV@28221|Deltaproteobacteria,43UZ6@69541|Desulfuromonadales	28221|Deltaproteobacteria	F	Belongs to the Nudix hydrolase family	-	-	3.6.1.13,3.6.1.55	ko:K01515,ko:K03574	ko00230,map00230	-	R01054	RC00002	ko00000,ko00001,ko01000,ko03400	-	-	-	NUDIX
DYD3_k127_419386_2	706587.Desti_3853	4.487e-102	347.0	COG0771@1|root,COG0771@2|Bacteria,1MVYD@1224|Proteobacteria,42MJY@68525|delta/epsilon subdivisions,2WJAQ@28221|Deltaproteobacteria,2MQ6S@213462|Syntrophobacterales	28221|Deltaproteobacteria	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	murD	-	6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	AlaDh_PNT_C,FAD_binding_3,Mur_ligase_C,Mur_ligase_M,NAD_binding_8
DYD3_k127_419386_3	720554.Clocl_0319	2.488e-96	330.0	COG0773@1|root,COG0773@2|Bacteria,1TQ5H@1239|Firmicutes,2484K@186801|Clostridia,3WGQ1@541000|Ruminococcaceae	186801|Clostridia	M	Belongs to the MurCDEF family	murC	-	6.3.2.8	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R03193	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_419386_5	246194.CHY_0055	3.476e-66	232.0	COG0313@1|root,COG0313@2|Bacteria,1TP6U@1239|Firmicutes,24864@186801|Clostridia,42F0X@68295|Thermoanaerobacterales	186801|Clostridia	H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA	rsmI	-	2.1.1.198	ko:K07056	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	TP_methylase
DYD3_k127_419386_0	1047013.AQSP01000118_gene1252	6.347e-125	422.0	COG0433@1|root,COG0433@2|Bacteria	2|Bacteria	S	helicase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_1	1172190.M947_10050	4.141e-115	387.0	COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,42MI8@68525|delta/epsilon subdivisions,2YNDI@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	GM	3-beta hydroxysteroid dehydrogenase/isomerase family	-	-	4.1.1.35	ko:K08678	ko00520,ko01100,map00520,map01100	M00361	R01384	RC00508	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_419386_13	935837.JAEK01000057_gene2475	1.754e-28	120.0	COG0662@1|root,COG0662@2|Bacteria,1VEYJ@1239|Firmicutes,4I91G@91061|Bacilli,1ZND5@1386|Bacillus	91061|Bacilli	G	Cupin 2, conserved barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_419386_12	644968.DFW101_2097	2.218e-30	135.0	COG0438@1|root,COG0438@2|Bacteria,1RH5W@1224|Proteobacteria,42UY3@68525|delta/epsilon subdivisions,2WQ9B@28221|Deltaproteobacteria,2MA2D@213115|Desulfovibrionales	28221|Deltaproteobacteria	M	PFAM Glycosyl transferase, group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_419386_9	1499967.BAYZ01000085_gene5179	1.577e-42	169.0	COG0438@1|root,COG0438@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_419386_15	591158.SSMG_01301	5.553e-19	100.0	COG0297@1|root,COG0297@2|Bacteria,2I2EE@201174|Actinobacteria	201174|Actinobacteria	G	PFAM Glycosyl transferase, group 1	-	GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0040007,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509	2.4.1.11	ko:K16150	ko00500,ko01100,map00500,map01100	-	R00292	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT4	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_419386_7	390874.Tpet_1005	1.382e-60	221.0	COG0391@1|root,COG0391@2|Bacteria,2GCH9@200918|Thermotogae	200918|Thermotogae	S	Required for morphogenesis under gluconeogenic growth conditions	-	-	-	-	-	-	-	-	-	-	-	-	UPF0052
DYD3_k127_419386_4	1185876.BN8_05885	3.148e-73	257.0	COG1004@1|root,COG1004@2|Bacteria	2|Bacteria	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	-	-	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_419386_23	1120936.KB907210_gene5545	4.863e-06	58.0	COG0438@1|root,COG0438@2|Bacteria,2GJ57@201174|Actinobacteria,4EHVT@85012|Streptosporangiales	201174|Actinobacteria	M	Glycosyl transferase 4-like domain	-	-	2.7.1.33	ko:K03525	ko00770,ko01100,map00770,map01100	M00120	R02971,R03018,R04391	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_419386_10	357808.RoseRS_0849	5.331e-34	140.0	COG2227@1|root,COG2227@2|Bacteria,2GAEK@200795|Chloroflexi,376X5@32061|Chloroflexia	32061|Chloroflexia	H	Methyltransferase type 12	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_419386_18	880072.Desac_2353	5.209e-12	78.0	COG1807@1|root,COG1807@2|Bacteria	2|Bacteria	M	4-amino-4-deoxy-L-arabinose transferase activity	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
DYD3_k127_419386_8	1408226.T233_01441	1.408e-46	177.0	COG0463@1|root,COG0463@2|Bacteria,1TPR3@1239|Firmicutes,4HC2Z@91061|Bacilli,4B1VV@81852|Enterococcaceae	91061|Bacilli	M	Glycosyltransferase like family 2	-	-	-	ko:K20534	-	-	-	-	ko00000,ko01000,ko01005,ko02000	4.D.2.1.9	GT2	-	Glycos_transf_2
DYD3_k127_419386_16	74547.PMT_1933	2.998e-18	94.0	COG2246@1|root,COG3394@1|root,COG2246@2|Bacteria,COG3394@2|Bacteria,1G2GK@1117|Cyanobacteria,1MNIY@1212|Prochloraceae	1117|Cyanobacteria	G	YdjC-like protein	-	-	-	-	-	-	-	-	-	-	-	-	GtrA,YdjC
DYD3_k127_420450_2	87626.PTD2_21862	5.91e-81	271.0	2CIQB@1|root,30R27@2|Bacteria,1N4EG@1224|Proteobacteria,1SCK9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	MTH538 TIR-like domain (DUF1863)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1863
DYD3_k127_420450_0	316067.Geob_2714	5.747e-127	416.0	COG0524@1|root,COG0524@2|Bacteria,1QA9U@1224|Proteobacteria,42RB8@68525|delta/epsilon subdivisions,2WNH6@28221|Deltaproteobacteria	28221|Deltaproteobacteria	FG	pfkB family carbohydrate kinase	-	-	-	-	-	-	-	-	-	-	-	-	Nuc_deoxyrib_tr,PfkB
DYD3_k127_420450_1	316067.Geob_2715	5.669e-95	322.0	COG0343@1|root,COG0343@2|Bacteria,1NMM1@1224|Proteobacteria	1224|Proteobacteria	H	queuine tRNA-ribosyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_4304010_0	909663.KI867150_gene2770	2.074e-22	109.0	COG3464@1|root,COG3464@2|Bacteria,1R8B7@1224|Proteobacteria	1224|Proteobacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	UPF0236
DYD3_k127_4304010_1	1232437.KL661988_gene151	1.011e-12	78.0	COG3464@1|root,COG3464@2|Bacteria	2|Bacteria	-	-	-	-	1.14.19.1	ko:K00507	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212	-	R02222	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	DDE_Tnp_ISL3,FA_desaturase,UPF0236
DYD3_k127_4353694_1	1122194.AUHU01000003_gene2135	1.398e-95	315.0	COG0726@1|root,COG3509@1|root,COG4677@1|root,COG0726@2|Bacteria,COG3509@2|Bacteria,COG4677@2|Bacteria	2|Bacteria	G	pectinesterase activity	-	-	3.2.1.89	ko:K01224,ko:K03932	-	-	-	-	ko00000,ko01000	-	CE1	-	CBM60,CBM_2,Calx-beta,Esterase_phd,Glyco_hydro_11,Peptidase_S9,RicinB_lectin_2,VCBS
DYD3_k127_4353694_0	1209072.ALBT01000023_gene3925	4.439e-113	377.0	COG2207@1|root,COG2207@2|Bacteria,1PHS5@1224|Proteobacteria,1S024@1236|Gammaproteobacteria,1FHYE@10|Cellvibrio	1236|Gammaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
DYD3_k127_4410421_10	158189.SpiBuddy_1854	1.297e-10	72.0	COG5362@1|root,COG5362@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6C
DYD3_k127_4410421_14	1460640.JCM19046_3542	2.705e-09	67.0	2EGZP@1|root,33ART@2|Bacteria,1VKPB@1239|Firmicutes,4HR69@91061|Bacilli	91061|Bacilli	S	YopX protein	-	-	-	-	-	-	-	-	-	-	-	-	YopX
DYD3_k127_4410421_2	1297742.A176_01335	1.024e-32	136.0	COG0863@1|root,COG0863@2|Bacteria,1P97D@1224|Proteobacteria,42S8M@68525|delta/epsilon subdivisions,2X85U@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	DNA methylase	-	-	2.1.1.72	ko:K00571	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	N6_N4_Mtase
DYD3_k127_4410421_7	1210884.HG799463_gene10305	3.473e-20	93.0	2EFHW@1|root,32KN3@2|Bacteria,2J4ED@203682|Planctomycetes	203682|Planctomycetes	S	Protein of unknown function (DUF3307)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4410421_19	1145276.T479_01570	0.0002447	49.0	2DD8C@1|root,2ZH15@2|Bacteria,1V322@1239|Firmicutes,4HPAH@91061|Bacilli	91061|Bacilli	S	Protein of unknown function (DUF669)	-	-	-	-	-	-	-	-	-	-	-	-	DUF669
DYD3_k127_4410421_0	331113.SNE_B23940	1.075e-44	169.0	COG3723@1|root,COG3723@2|Bacteria	2|Bacteria	L	DNA synthesis involved in double-strand break repair via homologous recombination	bet	-	-	ko:K07455	-	-	-	-	ko00000,ko03400	-	-	-	RecT
DYD3_k127_4410421_8	929704.Myrod_0673	1.241e-13	75.0	2EPRJ@1|root,33HC2@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4410421_9	697281.Mahau_2921	3.408e-12	72.0	COG4570@1|root,COG4570@2|Bacteria,1UDK7@1239|Firmicutes,24T1T@186801|Clostridia,42INU@68295|Thermoanaerobacterales	186801|Clostridia	L	PFAM endodeoxyribonuclease RusA	-	-	3.1.22.4	ko:K01160	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	RusA
DYD3_k127_4410421_4	1121918.ARWE01000001_gene1022	7.045e-26	115.0	COG3023@1|root,COG3023@2|Bacteria,1N032@1224|Proteobacteria,432MJ@68525|delta/epsilon subdivisions,2WX9X@28221|Deltaproteobacteria	28221|Deltaproteobacteria	V	PFAM N-acetylmuramoyl-L-alanine amidase, family 2	-	-	-	-	-	-	-	-	-	-	-	-	Amidase_2
DYD3_k127_4410421_17	1178825.ALIH01000029_gene2751	0.0001502	52.0	COG1345@1|root,COG1345@2|Bacteria,4NIGG@976|Bacteroidetes,1I0I5@117743|Flavobacteriia	976|Bacteroidetes	N	Concanavalin A-like lectin/glucanases superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Laminin_G_3
DYD3_k127_4410421_18	113395.AXAI01000008_gene1033	0.0001926	51.0	29WMV@1|root,30I8P@2|Bacteria,1NZGA@1224|Proteobacteria,2UTHJ@28211|Alphaproteobacteria,3K4A8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4410421_3	1123508.JH636441_gene3511	1.839e-32	139.0	COG0457@1|root,COG0463@1|root,COG1216@1|root,COG2227@1|root,COG4641@1|root,COG5010@1|root,COG0457@2|Bacteria,COG0463@2|Bacteria,COG1216@2|Bacteria,COG2227@2|Bacteria,COG4641@2|Bacteria,COG5010@2|Bacteria,2J07E@203682|Planctomycetes	203682|Planctomycetes	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_2,Glycos_transf_2,Methyltransf_23,TPR_16,TPR_19,TPR_7,TPR_8
DYD3_k127_4410421_11	188626.HMPREF0321_1949	7.955e-10	69.0	COG0457@1|root,COG0457@2|Bacteria,2H220@201174|Actinobacteria,1ZWF0@145357|Dermacoccaceae	201174|Actinobacteria	S	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24
DYD3_k127_4410421_5	868595.Desca_0880	3.691e-22	106.0	COG0438@1|root,COG1216@1|root,COG0438@2|Bacteria,COG1216@2|Bacteria,1V06G@1239|Firmicutes,247WU@186801|Clostridia,265AF@186807|Peptococcaceae	186801|Clostridia	M	Glycosyltransferase like family 2	-	-	-	ko:K07011	-	-	-	-	ko00000	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2
DYD3_k127_4410421_16	335541.Swol_0059	4.727e-05	54.0	COG1215@1|root,COG1215@2|Bacteria,1UIH3@1239|Firmicutes,25F40@186801|Clostridia	186801|Clostridia	M	glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4410421_1	375286.mma_2202	2.079e-34	144.0	28NGF@1|root,2Z9HT@2|Bacteria,1R9QF@1224|Proteobacteria,2VPSU@28216|Betaproteobacteria,47599@75682|Oxalobacteraceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4410421_12	1562701.BBOF01000081_gene249	1.119e-09	72.0	28MS5@1|root,2ZB0J@2|Bacteria,1PTV9@1224|Proteobacteria,2VMIH@28216|Betaproteobacteria,1KD2P@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4410421_6	883156.HMPREF9282_00550	2.43e-21	103.0	COG5362@1|root,COG5362@2|Bacteria,1U5ME@1239|Firmicutes,4H86U@909932|Negativicutes	909932|Negativicutes	S	Terminase RNaseH-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6C
DYD3_k127_4414539_0	314278.NB231_14788	3.17e-42	160.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,1RPCU@1236|Gammaproteobacteria,1WWF4@135613|Chromatiales	135613|Chromatiales	S	ABC transporter	-	-	-	ko:K15738	-	-	-	-	ko00000,ko02000	3.A.1.120.6	-	-	ABC_tran,ABC_tran_CTD,ABC_tran_Xtn
DYD3_k127_4414539_2	1120953.AUBH01000001_gene653	1.055e-14	76.0	COG2929@1|root,COG2929@2|Bacteria,1N6QP@1224|Proteobacteria,1SESI@1236|Gammaproteobacteria,46BGN@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	-	-	-	ko:K09803	-	-	-	-	ko00000	-	-	-	BrnT_toxin
DYD3_k127_4419571_0	383372.Rcas_3859	4.102e-156	499.0	COG3385@1|root,COG3385@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5,DDE_Tnp_1
DYD3_k127_4419571_1	349161.Dred_1139	5.119e-09	57.0	COG3852@1|root,COG3852@2|Bacteria,1TRH0@1239|Firmicutes,24IAZ@186801|Clostridia,263WT@186807|Peptococcaceae	186801|Clostridia	T	PAS domain	-	-	2.7.13.3	ko:K07710	ko02020,map02020	M00500	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_4,PAS_9
DYD3_k127_4425293_0	436308.Nmar_0444	1.215e-120	389.0	COG1215@1|root,arCOG01389@2157|Archaea,41SDD@651137|Thaumarchaeota	651137|Thaumarchaeota	M	Glycosyl transferase family group 2	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_3
DYD3_k127_445634_4	136993.KB900626_gene1559	1.186e-07	53.0	COG0438@1|root,COG0438@2|Bacteria,1MWEM@1224|Proteobacteria,2U1NW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_445634_2	323098.Nwi_0310	1.85e-55	202.0	COG3293@1|root,COG3293@2|Bacteria,1P5HD@1224|Proteobacteria,2TUQI@28211|Alphaproteobacteria,3JYMC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Transposase DDE domain	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DDE_Tnp_1_2,DUF4096
DYD3_k127_445634_3	1131269.AQVV01000013_gene1741	1.165e-54	202.0	COG5036@1|root,COG5036@2|Bacteria	2|Bacteria	P	cellular response to phosphate starvation	-	-	-	-	-	-	-	-	-	-	-	-	VTC
DYD3_k127_445634_0	1131269.AQVV01000013_gene1742	1.112e-151	512.0	28JA7@1|root,2Z951@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	CotH
DYD3_k127_445634_1	1131269.AQVV01000013_gene1743	4.363e-57	205.0	COG1285@1|root,COG1285@2|Bacteria	2|Bacteria	E	pathogenesis	-	-	-	-	-	-	-	-	-	-	-	-	DUF4956
DYD3_k127_4478452_1	1122212.AULO01000007_gene2433	4.463e-07	52.0	COG1715@1|root,COG1715@2|Bacteria,1Q2VY@1224|Proteobacteria,1RYEE@1236|Gammaproteobacteria,1XKZD@135619|Oceanospirillales	135619|Oceanospirillales	V	restriction endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	Mrr_N,Mrr_cat
DYD3_k127_4478452_0	269797.Mbar_A1346	2.643e-62	224.0	COG3293@1|root,arCOG03506@2157|Archaea	2157|Archaea	L	Transposase DDE domain	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DUF4096
DYD3_k127_4478452_2	483219.LILAB_36120	0.0002535	46.0	COG1715@1|root,COG1715@2|Bacteria,1Q2VY@1224|Proteobacteria,42PSS@68525|delta/epsilon subdivisions,2WKGZ@28221|Deltaproteobacteria,2Z2D0@29|Myxococcales	28221|Deltaproteobacteria	L	Restriction endonuclease	-	-	-	ko:K07448	-	-	-	-	ko00000,ko02048	-	-	-	HARE-HTH,Mrr_N,Mrr_cat
DYD3_k127_4548362_0	717773.Thicy_1334	1.444e-44	166.0	COG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,1RPBN@1236|Gammaproteobacteria,460NP@72273|Thiotrichales	72273|Thiotrichales	J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	-	-	2.1.1.193	ko:K09761	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_RNA
DYD3_k127_4548362_2	1247726.MIM_c18060	3.2e-28	115.0	2E8NP@1|root,332ZX@2|Bacteria,1NBDG@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4548362_3	391615.ABSJ01000042_gene2268	4.37e-13	76.0	COG0835@1|root,COG0835@2|Bacteria	2|Bacteria	NT	chemotaxis	chpC	-	-	ko:K03408,ko:K06598	ko02020,ko02025,ko02030,map02020,map02025,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheW
DYD3_k127_4552707_2	1112216.JH594425_gene3442	2.591e-05	50.0	COG5336@1|root,COG5336@2|Bacteria	2|Bacteria	C	function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex	atpI	-	-	ko:K02116	-	-	-	-	ko00000,ko00194	3.A.2.1	-	-	ATPase_gene1
DYD3_k127_4552707_0	909663.KI867150_gene2010	1.581e-88	309.0	COG3328@1|root,COG3328@2|Bacteria,1MU4P@1224|Proteobacteria,42S30@68525|delta/epsilon subdivisions,2WQ5S@28221|Deltaproteobacteria,2MRTS@213462|Syntrophobacterales	28221|Deltaproteobacteria	L	Transposase, Mutator family	-	-	-	-	-	-	-	-	-	-	-	-	Transposase_mut
DYD3_k127_4552707_1	335543.Sfum_2336	7.025e-46	168.0	COG1838@1|root,COG1951@1|root,COG1838@2|Bacteria,COG1951@2|Bacteria,1MUV9@1224|Proteobacteria,43DIW@68525|delta/epsilon subdivisions,2X8Q7@28221|Deltaproteobacteria	28221|Deltaproteobacteria	C	Catalyzes the reversible hydration of fumarate to (S)- malate	fumB	-	4.2.1.2	ko:K01676	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374	R01082	RC00443	ko00000,ko00001,ko00002,ko01000	-	-	-	Fumerase,Fumerase_C
DYD3_k127_4609860_3	498211.CJA_0816	3.212e-42	159.0	COG3507@1|root,COG3507@2|Bacteria,1R5CK@1224|Proteobacteria,1SHEP@1236|Gammaproteobacteria,1FGSA@10|Cellvibrio	1236|Gammaproteobacteria	G	Ricin-type beta-trefoil	-	-	3.2.1.99	ko:K06113	-	-	-	-	ko00000,ko01000	-	GH43	-	Glyco_hydro_43,RicinB_lectin_2
DYD3_k127_4609860_0	504472.Slin_3048	5.705e-76	256.0	2DK0G@1|root,30823@2|Bacteria,4NNIV@976|Bacteroidetes,47PPM@768503|Cytophagia	976|Bacteroidetes	S	Rifampin ADP-ribosyl transferase	-	-	-	-	-	-	-	-	-	-	-	-	Arr-ms
DYD3_k127_4609860_2	1123054.KB907713_gene543	4.494e-45	164.0	COG1028@1|root,COG1028@2|Bacteria,1MVQW@1224|Proteobacteria,1RNY1@1236|Gammaproteobacteria,1X0FT@135613|Chromatiales	135613|Chromatiales	IQ	KR domain	-	-	1.1.1.304,1.1.1.76	ko:K03366	ko00650,map00650	-	R02855,R02946,R03707,R09078,R10505	RC00205,RC00525	ko00000,ko00001,ko01000	-	-	-	adh_short
DYD3_k127_4609860_1	323261.Noc_0094	1.962e-48	174.0	COG0431@1|root,COG0431@2|Bacteria,1MXQ8@1224|Proteobacteria,1RNWW@1236|Gammaproteobacteria,1X0CG@135613|Chromatiales	135613|Chromatiales	S	Flavodoxin-like fold	-	-	-	-	-	-	-	-	-	-	-	-	FMN_red
DYD3_k127_464533_8	713587.THITH_03355	1.866e-22	97.0	COG5450@1|root,COG5450@2|Bacteria,1N75T@1224|Proteobacteria,1SD7P@1236|Gammaproteobacteria,1WZRQ@135613|Chromatiales	135613|Chromatiales	K	Bacterial antitoxin of type II TA system, VapB	-	-	-	-	-	-	-	-	-	-	-	-	VapB_antitoxin
DYD3_k127_464533_5	713587.THITH_03360	1.665e-43	162.0	COG1487@1|root,COG1487@2|Bacteria,1MZZ9@1224|Proteobacteria,1SDG0@1236|Gammaproteobacteria,1X1QS@135613|Chromatiales	135613|Chromatiales	S	nucleic acid-binding protein contains PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_464533_2	550540.Fbal_1922	8.748e-89	296.0	COG3647@1|root,COG3647@2|Bacteria,1N7NB@1224|Proteobacteria,1RS4F@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Membrane	yjdF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K08984	-	-	-	-	ko00000	-	-	-	DUF2238
DYD3_k127_464533_4	794903.OPIT5_03605	1.684e-72	254.0	COG4748@1|root,COG4748@2|Bacteria	2|Bacteria	NT	type I restriction enzyme	-	-	-	ko:K07504	-	-	-	-	ko00000	-	-	-	AAA_31,HSDR_N,HSDR_N_2
DYD3_k127_464533_0	402777.KB235904_gene3811	1.127e-118	390.0	COG1192@1|root,COG1192@2|Bacteria,1G2GG@1117|Cyanobacteria,1H9IU@1150|Oscillatoriales	1117|Cyanobacteria	D	CobQ CobB MinD ParA nucleotide binding domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_31
DYD3_k127_464533_3	378806.STAUR_5974	2.439e-75	263.0	COG1694@1|root,COG1694@2|Bacteria,1MX3B@1224|Proteobacteria	1224|Proteobacteria	S	Mazg nucleotide pyrophosphohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	MazG
DYD3_k127_464533_9	1038867.AXAY01000029_gene1701	1.072e-14	83.0	COG0181@1|root,COG0181@2|Bacteria,1R8MV@1224|Proteobacteria,2U3JA@28211|Alphaproteobacteria,3K5UZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	hydroxymethylbilane synthase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_464533_7	1131269.AQVV01000001_gene1432	8.885e-28	126.0	COG1573@1|root,COG1573@2|Bacteria	2|Bacteria	L	deaminated base DNA N-glycosylase activity	ung2	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_464533_1	397945.Aave_4521	1.969e-117	386.0	COG3440@1|root,COG3440@2|Bacteria,1N4JP@1224|Proteobacteria,2VVU0@28216|Betaproteobacteria,4AFJZ@80864|Comamonadaceae	28216|Betaproteobacteria	V	HNH endonuclease	-	-	-	ko:K07454	-	-	-	-	ko00000	-	-	-	HNH_2
DYD3_k127_472736_1	1005048.CFU_2199	2.664e-149	483.0	COG4191@1|root,COG4191@2|Bacteria,1R72V@1224|Proteobacteria,2VJVI@28216|Betaproteobacteria	28216|Betaproteobacteria	T	PFAM ATP-binding region, ATPase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA_7TM
DYD3_k127_472736_0	717774.Marme_3726	1.351e-154	497.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,1RZA5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	COG0156 7-keto-8-aminopelargonate synthetase and related enzymes	cqsA	GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769	-	ko:K10915	ko02024,ko05111,map02024,map05111	-	-	-	ko00000,ko00001,ko01000	-	-	-	Aminotran_1_2
DYD3_k127_472736_3	491952.Mar181_2241	1.827e-64	233.0	COG4566@1|root,COG4566@2|Bacteria,1QVXM@1224|Proteobacteria,1T4J5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_472736_2	491952.Mar181_2240	1.887e-75	262.0	COG0642@1|root,COG2205@2|Bacteria,1NFHM@1224|Proteobacteria,1SZ2T@1236|Gammaproteobacteria	1236|Gammaproteobacteria	T	Histidine kinase	-	-	2.7.13.3	ko:K10916	ko02020,ko02024,ko05111,map02020,map02024,map05111	M00513	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c
DYD3_k127_4753656_0	1121377.KB906410_gene620	4.439e-81	274.0	COG3335@1|root,COG3335@2|Bacteria	2|Bacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3,HTH_28,HTH_33
DYD3_k127_4753656_2	1123276.KB893253_gene3417	1.783e-54	196.0	COG3415@1|root,COG3415@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23,HTH_28,HTH_32,HTH_33
DYD3_k127_4753656_3	1121272.KB903249_gene1678	7.88e-09	59.0	arCOG06733@1|root,32HH3@2|Bacteria,2GUA7@201174|Actinobacteria,4DK94@85008|Micromonosporales	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4753656_1	485913.Krac_0278	8.152e-60	211.0	COG0604@1|root,COG0604@2|Bacteria,2G84Q@200795|Chloroflexi	200795|Chloroflexi	C	PFAM Alcohol dehydrogenase zinc-binding domain protein	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N_2
DYD3_k127_4884127_0	4558.Sb07g003556.1	4.031e-149	491.0	COG2801@1|root,KOG0017@2759|Eukaryota,37YYP@33090|Viridiplantae,3GQD7@35493|Streptophyta,3M3FD@4447|Liliopsida,3IKKZ@38820|Poales	35493|Streptophyta	L	Reverse transcriptase (RNA-dependent DNA polymerase)	-	-	-	-	-	-	-	-	-	-	-	-	RVT_2
DYD3_k127_4884127_1	28532.XP_010534672.1	1.416e-111	389.0	COG2801@1|root,KOG0017@2759|Eukaryota,37YE3@33090|Viridiplantae,3GNZM@35493|Streptophyta	35493|Streptophyta	L	transposition, RNA-mediated	-	-	-	-	-	-	-	-	-	-	-	-	rve
DYD3_k127_4886956_16	646529.Desaci_4409	3.246e-06	57.0	COG2246@1|root,COG2246@2|Bacteria	2|Bacteria	S	polysaccharide biosynthetic process	-	-	-	-	-	-	-	-	-	-	-	-	GtrA
DYD3_k127_4886956_14	1121935.AQXX01000143_gene4226	2.745e-17	93.0	COG1216@1|root,COG1216@2|Bacteria,1QU2Q@1224|Proteobacteria,1T1NF@1236|Gammaproteobacteria,1XRSY@135619|Oceanospirillales	135619|Oceanospirillales	S	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_4886956_11	221360.RS9917_04885	3.092e-28	127.0	COG0438@1|root,COG0438@2|Bacteria,1G2C9@1117|Cyanobacteria,1GYJH@1129|Synechococcus	1117|Cyanobacteria	M	Glycosyl transferase, group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_4886956_7	1499967.BAYZ01000086_gene5149	1.131e-63	232.0	COG0438@1|root,COG0438@2|Bacteria,2NR76@2323|unclassified Bacteria	2|Bacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_4886956_13	118161.KB235919_gene6392	1.406e-21	107.0	COG0438@1|root,COG0438@2|Bacteria,1G271@1117|Cyanobacteria,3VKF8@52604|Pleurocapsales	1117|Cyanobacteria	M	Glycosyl transferase 4-like domain	icsA	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_4886956_8	269800.Tfu_0944	3.082e-41	164.0	COG2227@1|root,COG2227@2|Bacteria,2IPID@201174|Actinobacteria	201174|Actinobacteria	H	Nodulation protein S (NodS)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_23,Methyltransf_25
DYD3_k127_4886956_10	1487923.DP73_18170	4.023e-29	126.0	COG2227@1|root,COG2227@2|Bacteria,1V9EP@1239|Firmicutes,24ZEZ@186801|Clostridia,263SG@186807|Peptococcaceae	186801|Clostridia	H	PFAM Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_4886956_3	399739.Pmen_1872	3.903e-101	340.0	COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria,1RNQ2@1236|Gammaproteobacteria,1YDA8@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	M	Polysaccharide biosynthesis protein	fnlA	-	5.1.3.2	ko:K17716	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00362	R00291	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Polysacc_syn_2C,Polysacc_synt_2
DYD3_k127_4886956_5	1489678.RDMS_08195	8.929e-79	277.0	COG0451@1|root,COG1898@1|root,COG0451@2|Bacteria,COG1898@2|Bacteria	2|Bacteria	M	dTDP-4-dehydrorhamnose 3,5-epimerase activity	fnlB	-	1.1.1.367	ko:K19068	-	-	-	-	ko00000,ko01000	-	-	-	Epimerase,GPI
DYD3_k127_4886956_1	404380.Gbem_1623	6.521e-151	485.0	COG0381@1|root,COG0381@2|Bacteria,1MWZN@1224|Proteobacteria,42P5U@68525|delta/epsilon subdivisions,2WK5C@28221|Deltaproteobacteria	28221|Deltaproteobacteria	M	UDP-N-acetylglucosamine 2-epimerase	wbjD	-	5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_4886956_15	269796.Rru_A2739	6.789e-14	83.0	COG0438@1|root,COG0457@1|root,COG0438@2|Bacteria,COG0457@2|Bacteria	2|Bacteria	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_4886956_9	523845.AQXV01000055_gene161	6.351e-30	136.0	COG2244@1|root,arCOG02209@2157|Archaea,2Y4CE@28890|Euryarchaeota	28890|Euryarchaeota	S	Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt
DYD3_k127_4886956_12	929703.KE386491_gene1828	3.861e-28	132.0	COG3307@1|root,COG3307@2|Bacteria	2|Bacteria	M	-O-antigen	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
DYD3_k127_4886956_6	452637.Oter_2589	1.583e-74	262.0	COG0812@1|root,COG0812@2|Bacteria,46V69@74201|Verrucomicrobia	74201|Verrucomicrobia	M	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain	-	-	1.3.1.98	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R03191,R03192	RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	FAD_binding_4,MurB_C
DYD3_k127_4886956_0	748449.Halha_2230	1.164e-217	702.0	COG0653@1|root,COG0653@2|Bacteria,1TPEY@1239|Firmicutes,247N2@186801|Clostridia,3WAH3@53433|Halanaerobiales	186801|Clostridia	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	secA	-	-	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4	-	-	Helicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW
DYD3_k127_4886956_4	450851.PHZ_c0254	3.633e-79	275.0	COG0536@1|root,COG0536@2|Bacteria,1MUGZ@1224|Proteobacteria,2TR5I@28211|Alphaproteobacteria,2KF3Z@204458|Caulobacterales	204458|Caulobacterales	S	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control	obg	-	-	ko:K03979	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	GTP1_OBG,MMR_HSR1
DYD3_k127_4886956_2	309799.DICTH_1040	5.748e-121	404.0	COG0064@1|root,COG0064@2|Bacteria	2|Bacteria	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatB	GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.1.1.12,6.3.5.6,6.3.5.7	ko:K01876,ko:K02434	ko00970,ko01100,map00970,map01100	M00359,M00360	R03905,R04212,R05577	RC00010,RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	GatB_N,GatB_Yqey
DYD3_k127_4886956_17	1144307.PMI04_04397	1.157e-05	59.0	COG5301@1|root,COG5301@2|Bacteria,1Q0GF@1224|Proteobacteria,2V8X8@28211|Alphaproteobacteria,2KC4A@204457|Sphingomonadales	204457|Sphingomonadales	G	cellulose 1,4-beta-cellobiosidase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4910147_0	82654.Pse7367_2040	2.803e-114	376.0	COG3039@1|root,COG3039@2|Bacteria,1G7AF@1117|Cyanobacteria,1HFJI@1150|Oscillatoriales	1117|Cyanobacteria	L	Transposase IS4 family	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_5
DYD3_k127_4917755_1	926569.ANT_22520	4.117e-96	323.0	COG1032@1|root,COG1032@2|Bacteria,2G5N0@200795|Chloroflexi	200795|Chloroflexi	C	Elongator protein 3, MiaB family, Radical SAM	-	-	-	-	-	-	-	-	-	-	-	-	Radical_SAM
DYD3_k127_4917755_0	927677.ALVU02000006_gene425	3.16e-129	428.0	COG4467@1|root,COG4467@2|Bacteria,1GR8D@1117|Cyanobacteria	1117|Cyanobacteria	S	Involved in initiation control of chromosome replication	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4949162_0	396588.Tgr7_1229	6.081e-149	489.0	COG2199@1|root,COG2200@1|root,COG2199@2|Bacteria,COG2200@2|Bacteria,1PJCA@1224|Proteobacteria,1RS4H@1236|Gammaproteobacteria,1WWNV@135613|Chromatiales	135613|Chromatiales	T	PFAM EAL domain	-	-	-	ko:K21025	ko02025,map02025	-	-	-	ko00000,ko00001	-	-	-	EAL,GGDEF,PAS,PAS_8,PAS_9,Response_reg
DYD3_k127_4949162_5	323261.Noc_0167	1.426e-06	51.0	COG1476@1|root,COG1476@2|Bacteria,1QWRE@1224|Proteobacteria,1T2XD@1236|Gammaproteobacteria,1X0ZS@135613|Chromatiales	135613|Chromatiales	K	Cro/C1-type HTH DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_4949162_3	1123487.KB892834_gene2798	3.803e-43	162.0	COG0454@1|root,COG0456@2|Bacteria,1N5JK@1224|Proteobacteria	1224|Proteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_4949162_1	1121878.AUGL01000034_gene2017	1.024e-142	455.0	COG2801@1|root,COG2801@2|Bacteria,1MZ45@1224|Proteobacteria,1RSNX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	COG2801 Transposase and inactivated derivatives	ylbG	-	-	-	-	-	-	-	-	-	-	-	HTH_29,rve,rve_2,rve_3
DYD3_k127_4949162_4	754331.AEME01000001_gene2518	1.897e-40	149.0	COG2801@1|root,COG2801@2|Bacteria,1MZ45@1224|Proteobacteria,1RSNX@1236|Gammaproteobacteria,3XQ1I@561|Escherichia	1236|Gammaproteobacteria	L	COG2801 Transposase and inactivated derivatives	ylbG	-	-	-	-	-	-	-	-	-	-	-	HTH_29,rve,rve_2,rve_3
DYD3_k127_4949162_2	391615.ABSJ01000017_gene1633	2.635e-59	209.0	COG0188@1|root,COG0188@2|Bacteria,1MURI@1224|Proteobacteria,1RMTC@1236|Gammaproteobacteria,1J4FT@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	parC	GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006276,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009330,GO:0009987,GO:0016020,GO:0016043,GO:0019897,GO:0019898,GO:0022402,GO:0030541,GO:0032991,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0098813,GO:1901360,GO:1901363	-	ko:K02621	-	-	-	-	ko00000,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
DYD3_k127_4959761_0	1123248.KB893348_gene72	1.494e-124	407.0	COG4804@1|root,COG4804@2|Bacteria,4NGY8@976|Bacteroidetes,1IRN5@117747|Sphingobacteriia	976|Bacteroidetes	S	Protein of unknown function (DUF1016)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1016
DYD3_k127_4959761_3	697282.Mettu_3322	3.726e-40	164.0	29ZW7@1|root,30MXJ@2|Bacteria,1Q4Y4@1224|Proteobacteria,1TI0C@1236|Gammaproteobacteria,1XG7K@135618|Methylococcales	135618|Methylococcales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4959761_2	1157708.KB907452_gene3665	6.046e-64	226.0	COG3863@1|root,COG3863@2|Bacteria,1RBGX@1224|Proteobacteria,2VYTV@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C92
DYD3_k127_4959761_1	349521.HCH_00210	1.398e-64	237.0	COG1879@1|root,COG1879@2|Bacteria,1R8HF@1224|Proteobacteria,1RSFZ@1236|Gammaproteobacteria,1XPKN@135619|Oceanospirillales	135619|Oceanospirillales	G	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_4
DYD3_k127_4959761_5	742767.HMPREF9456_00091	3.625e-07	52.0	COG0791@1|root,COG0791@2|Bacteria,4NM7I@976|Bacteroidetes,2FXHU@200643|Bacteroidia	976|Bacteroidetes	M	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C92
DYD3_k127_4959761_4	1122137.AQXF01000005_gene1270	1.348e-14	74.0	2E42N@1|root,32YZ4@2|Bacteria,1NB0A@1224|Proteobacteria,2UHGU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4964104_1	1279038.KB907338_gene776	2.931e-17	86.0	COG0419@1|root,COG1112@1|root,COG0419@2|Bacteria,COG1112@2|Bacteria,1MW2R@1224|Proteobacteria,2TVCV@28211|Alphaproteobacteria,2JRGU@204441|Rhodospirillales	204441|Rhodospirillales	L	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_11,AAA_12
DYD3_k127_4964104_0	1337936.IJ00_15270	2.994e-101	345.0	COG3385@1|root,COG3385@2|Bacteria,1G27F@1117|Cyanobacteria,1HM6Y@1161|Nostocales	1117|Cyanobacteria	L	PFAM Transposase DDE domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1
DYD3_k127_5010169_4	512565.AMIS_22960	2.045e-18	93.0	COG3640@1|root,COG3640@2|Bacteria,2GJPE@201174|Actinobacteria,4DC0D@85008|Micromonosporales	201174|Actinobacteria	D	CobQ/CobB/MinD/ParA nucleotide binding domain	cooC	-	-	ko:K07321	-	-	-	-	ko00000	-	-	-	CbiA
DYD3_k127_5010169_8	574087.Acear_1767	0.0002447	49.0	COG4970@1|root,COG4970@2|Bacteria	2|Bacteria	NU	protein transport across the cell outer membrane	-	-	-	ko:K08084	-	-	-	-	ko00000,ko02044	3.A.15.2	-	-	GspH,N_methyl
DYD3_k127_5010169_3	519989.ECTPHS_04329	5.888e-43	172.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,1RQ86@1236|Gammaproteobacteria,1WXA3@135613|Chromatiales	135613|Chromatiales	U	General secretion pathway protein F	-	-	-	ko:K02455	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSF
DYD3_k127_5010169_0	511051.CSE_14720	6.762e-104	351.0	COG2804@1|root,COG2804@2|Bacteria	2|Bacteria	NU	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB	-	-	-	ko:K02652	-	-	-	-	ko00000,ko02035,ko02044	3.A.15.2	-	-	T2SSE,T2SSE_N
DYD3_k127_5010169_7	1042377.AFPJ01000011_gene418	4.676e-06	56.0	COG3584@1|root,COG3584@2|Bacteria,1MZPJ@1224|Proteobacteria,1SBH0@1236|Gammaproteobacteria,46BSK@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	3D domain protein	DR0488	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5010169_1	349161.Dred_0674	8.809e-62	226.0	COG0772@1|root,COG0772@2|Bacteria,1TPT7@1239|Firmicutes,24894@186801|Clostridia,2619Y@186807|Peptococcaceae	186801|Clostridia	D	Belongs to the SEDS family	ftsW	-	-	ko:K03588	ko04112,map04112	-	-	-	ko00000,ko00001,ko02000,ko03036	2.A.103.1	-	-	FTSW_RODA_SPOVE
DYD3_k127_5010169_2	309801.trd_0060	7.973e-45	176.0	COG0472@1|root,COG0472@2|Bacteria,2G5TJ@200795|Chloroflexi,27Y23@189775|Thermomicrobia	189775|Thermomicrobia	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	mraY	-	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	-	R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146	-	-	Glycos_transf_4
DYD3_k127_5010169_6	1408423.JHYA01000001_gene972	2.201e-08	66.0	COG1686@1|root,COG1686@2|Bacteria,1TQ8M@1239|Firmicutes,4H40G@909932|Negativicutes	909932|Negativicutes	M	Belongs to the peptidase S11 family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S11
DYD3_k127_5010169_5	272621.LBA0962	1.524e-16	85.0	COG1386@1|root,COG1386@2|Bacteria,1V6HI@1239|Firmicutes,4HIQ0@91061|Bacilli,3F5RN@33958|Lactobacillaceae	91061|Bacilli	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves	scpB	GO:0003674,GO:0005488,GO:0005515,GO:0042802	-	ko:K06024	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpB
DYD3_k127_5010399_0	1192034.CAP_3197	1.404e-31	128.0	COG3321@1|root,COG3321@2|Bacteria,1R89Z@1224|Proteobacteria,43C78@68525|delta/epsilon subdivisions,2WTIJ@28221|Deltaproteobacteria,2YYA7@29|Myxococcales	28221|Deltaproteobacteria	Q	PKS_DH	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,ketoacyl-synt
DYD3_k127_5010993_5	1210045.ALNP01000007_gene99	0.0002592	49.0	COG1403@1|root,COG1403@2|Bacteria,2GYWG@201174|Actinobacteria	201174|Actinobacteria	L	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	HNH,HNH_3
DYD3_k127_5010993_4	351746.Pput_3383	4.47e-10	66.0	2DRN8@1|root,33CCM@2|Bacteria,1NGRN@1224|Proteobacteria,1SHHM@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5010993_0	1131814.JAFO01000001_gene2529	1.195e-39	156.0	COG3209@1|root,COG3209@2|Bacteria	2|Bacteria	M	self proteolysis	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_75,Peptidase_S74,YadA_head
DYD3_k127_5010993_2	742725.HMPREF9450_02079	2.126e-12	73.0	COG1403@1|root,COG1403@2|Bacteria,4NT6C@976|Bacteroidetes,2FSYF@200643|Bacteroidia	976|Bacteroidetes	V	Psort location Cytoplasmic, score 8.96	-	-	-	-	-	-	-	-	-	-	-	-	NinG
DYD3_k127_5010993_3	28152.DJ57_2597	2.249e-10	63.0	2DP75@1|root,330U8@2|Bacteria,1N8XA@1224|Proteobacteria,1SCZN@1236|Gammaproteobacteria,41HQN@629|Yersinia	1236|Gammaproteobacteria	S	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	AP2,HNH_3
DYD3_k127_5010993_1	28152.DJ57_2587	1.499e-18	89.0	2DP75@1|root,330U8@2|Bacteria,1N8XA@1224|Proteobacteria,1SCZN@1236|Gammaproteobacteria,41HQN@629|Yersinia	1236|Gammaproteobacteria	S	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	AP2,HNH_3
DYD3_k127_5012675_0	1056820.KB900643_gene820	6.634e-65	235.0	COG0726@1|root,COG1506@1|root,COG2133@1|root,COG3693@1|root,COG0726@2|Bacteria,COG1506@2|Bacteria,COG2133@2|Bacteria,COG3693@2|Bacteria,1R7W4@1224|Proteobacteria,1RXZE@1236|Gammaproteobacteria,2PPGH@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	G	Di-glucose binding within endoplasmic reticulum	xyn11B	-	-	-	-	-	-	-	-	-	-	-	CBM60,CBM_10,CBM_5_12_2,Glyco_hydro_11,Malectin,Polysacc_deac_1
DYD3_k127_5012675_1	29581.BW37_05468	3.054e-41	166.0	COG3507@1|root,COG3507@2|Bacteria,1R3V6@1224|Proteobacteria,2WBNZ@28216|Betaproteobacteria,4766P@75682|Oxalobacteraceae	28216|Betaproteobacteria	G	Glycosyl hydrolases family 43	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_43
DYD3_k127_5135014_1	449447.MAE_04150	2.273e-39	151.0	COG3415@1|root,COG3415@2|Bacteria,1GA2F@1117|Cyanobacteria	1117|Cyanobacteria	L	Homeodomain-like domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_32
DYD3_k127_5135014_0	449447.MAE_20920	1.64e-89	300.0	COG3335@1|root,COG3335@2|Bacteria,1G5W5@1117|Cyanobacteria	1117|Cyanobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
DYD3_k127_5160414_2	1116472.MGMO_8c00700	2.097e-42	168.0	2DPCB@1|root,331HJ@2|Bacteria,1NED4@1224|Proteobacteria	1224|Proteobacteria	S	Putative phage abortive infection protein	-	-	-	-	-	-	-	-	-	-	-	-	putAbiC
DYD3_k127_5160414_6	1005999.GLGR_1796	0.0003521	45.0	COG3863@1|root,COG3863@2|Bacteria,1RBGX@1224|Proteobacteria,1S01D@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	yiiX	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C92
DYD3_k127_5160414_0	349521.HCH_00210	1.003e-61	229.0	COG1879@1|root,COG1879@2|Bacteria,1R8HF@1224|Proteobacteria,1RSFZ@1236|Gammaproteobacteria,1XPKN@135619|Oceanospirillales	135619|Oceanospirillales	G	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_4
DYD3_k127_5160414_4	1114922.CIFAM_21_01050	4.829e-12	69.0	COG0791@1|root,COG0791@2|Bacteria,1R105@1224|Proteobacteria,1T53U@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C92
DYD3_k127_5160414_1	1134474.O59_002473	1.648e-42	158.0	2E42N@1|root,32YZ4@2|Bacteria,1NB0A@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_2
DYD3_k127_5160414_3	228410.NE1467	1.187e-37	143.0	COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,2VHRS@28216|Betaproteobacteria,37215@32003|Nitrosomonadales	28216|Betaproteobacteria	I	fatty acid desaturase	ole1	-	1.14.19.1	ko:K00507	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212	-	R02222	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	DDE_Tnp_ISL3,FA_desaturase
DYD3_k127_5171371_2	648757.Rvan_1379	9.598e-145	476.0	COG0507@1|root,COG0507@2|Bacteria,1QCFP@1224|Proteobacteria,2V700@28211|Alphaproteobacteria,3N8NH@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	L	Helicase	-	-	-	-	-	-	-	-	-	-	-	-	Herpes_Helicase,PIF1
DYD3_k127_5171371_10	1410632.JHWW01000004_gene1687	4.776e-48	181.0	COG1187@1|root,COG1187@2|Bacteria,1TP68@1239|Firmicutes,248UG@186801|Clostridia,27J6C@186928|unclassified Lachnospiraceae	186801|Clostridia	J	S4 RNA-binding domain	rluF	-	5.4.99.21,5.4.99.22	ko:K06178,ko:K06182	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_5171371_9	634497.HAH_2779	1.197e-63	239.0	COG0277@1|root,arCOG00337@2157|Archaea,2XT5C@28890|Euryarchaeota,23SCM@183963|Halobacteria	183963|Halobacteria	C	COG0277 FAD FMN-containing dehydrogenases	glcD2	-	-	-	-	-	-	-	-	-	-	-	CCG,FAD-oxidase_C,FAD_binding_4,Fer4_17
DYD3_k127_5171371_13	1382306.JNIM01000001_gene2619	2.252e-31	130.0	COG1595@1|root,COG1595@2|Bacteria	2|Bacteria	K	DNA-templated transcription, initiation	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4,Sigma70_r4_2
DYD3_k127_5171371_15	632292.Calhy_0461	4.289e-27	128.0	COG0845@1|root,COG0845@2|Bacteria,1TT2M@1239|Firmicutes,24BJV@186801|Clostridia,42GDS@68295|Thermoanaerobacterales	186801|Clostridia	M	TIGRFAM efflux transporter, RND family, MFP subunit	-	-	-	ko:K02005	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_5171371_7	936550.HMPREF1492_0149	4.066e-83	284.0	COG1136@1|root,COG1136@2|Bacteria,2GK3I@201174|Actinobacteria,4CV1R@84998|Coriobacteriia	84998|Coriobacteriia	V	ABC transporter	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_5171371_3	871968.DESME_13845	1.662e-117	390.0	COG0577@1|root,COG0577@2|Bacteria,1TPUU@1239|Firmicutes,2483J@186801|Clostridia,260DV@186807|Peptococcaceae	186801|Clostridia	V	ABC-type antimicrobial peptide transport system, permease component	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_5171371_16	1504672.669785050	8.409e-26	112.0	COG0724@1|root,COG0724@2|Bacteria,1N6VR@1224|Proteobacteria,2VRC4@28216|Betaproteobacteria,4AE4Z@80864|Comamonadaceae	28216|Betaproteobacteria	S	PFAM RNP-1 like RNA-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	RRM_1
DYD3_k127_5171371_12	861455.HMPREF9184_01306	1.658e-34	141.0	COG2890@1|root,COG2890@2|Bacteria,1TSMA@1239|Firmicutes,4HC6W@91061|Bacilli	91061|Bacilli	J	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif	prmC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464	2.1.1.297	ko:K02493	-	-	R10806	RC00003,RC03279	ko00000,ko01000,ko03012	-	-	-	MTS
DYD3_k127_5171371_6	414996.IL38_17240	1.255e-84	296.0	COG0124@1|root,COG0124@2|Bacteria,2GIYJ@201174|Actinobacteria,409ZU@622450|Actinopolysporales	201174|Actinobacteria	J	Histidyl-tRNA synthetase	hisS	-	6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_His
DYD3_k127_5171371_14	96561.Dole_1953	6.682e-31	129.0	COG1111@1|root,COG1205@1|root,COG1111@2|Bacteria,COG1205@2|Bacteria,1QU0I@1224|Proteobacteria,42M4R@68525|delta/epsilon subdivisions,2WK1V@28221|Deltaproteobacteria,2MI86@213118|Desulfobacterales	28221|Deltaproteobacteria	L	DEAD DEAH box helicase	yprA	-	-	ko:K06877	-	-	-	-	ko00000	-	-	-	DEAD,DUF1998,Helicase_C,RNase_H_2
DYD3_k127_5171371_5	1267211.KI669560_gene706	7.414e-87	319.0	COG0210@1|root,COG2887@1|root,COG0210@2|Bacteria,COG2887@2|Bacteria,4NIIR@976|Bacteroidetes,1IPF7@117747|Sphingobacteriia	976|Bacteroidetes	L	Belongs to the helicase family. UvrD subfamily	-	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
DYD3_k127_5171371_4	697281.Mahau_0302	5.242e-102	348.0	COG0568@1|root,COG0568@2|Bacteria,1TPD6@1239|Firmicutes,2481I@186801|Clostridia,42FCG@68295|Thermoanaerobacterales	186801|Clostridia	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	sigA	-	-	ko:K03086	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
DYD3_k127_5171371_8	1125863.JAFN01000001_gene3288	1.76e-82	295.0	COG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,42MDZ@68525|delta/epsilon subdivisions,2WJ9Y@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	dnaG	-	-	ko:K02316	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2
DYD3_k127_5171371_0	1089548.KI783301_gene3341	0.0	1112.0	COG0086@1|root,COG0086@2|Bacteria,1TNYT@1239|Firmicutes,4HA24@91061|Bacilli,3WEDC@539002|Bacillales incertae sedis	91061|Bacilli	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoC	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
DYD3_k127_5171371_1	756499.Desde_0416	0.0	1075.0	COG0085@1|root,COG0085@2|Bacteria,1TP96@1239|Firmicutes,247J1@186801|Clostridia,25ZXZ@186807|Peptococcaceae	186801|Clostridia	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoB	-	2.7.7.6	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
DYD3_k127_5171371_11	268407.PWYN_23855	9.282e-44	167.0	COG0336@1|root,COG0336@2|Bacteria,1TPBV@1239|Firmicutes,4HBFV@91061|Bacilli,26RCU@186822|Paenibacillaceae	91061|Bacilli	J	Belongs to the RNA methyltransferase TrmD family	trmD	GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.228	ko:K00554	-	-	R00597	RC00003,RC00334	ko00000,ko01000,ko03016	-	-	-	tRNA_m1G_MT
DYD3_k127_5171371_17	439292.Bsel_1720	2.957e-13	74.0	COG1837@1|root,COG1837@2|Bacteria	2|Bacteria	L	Belongs to the UPF0109 family	ylqC	-	-	ko:K06960	-	-	-	-	ko00000	-	-	-	KH_4
DYD3_k127_5171371_18	255470.cbdbB15	1.884e-12	74.0	COG0228@1|root,COG0228@2|Bacteria,2G7A3@200795|Chloroflexi,34DFW@301297|Dehalococcoidia	301297|Dehalococcoidia	J	Belongs to the bacterial ribosomal protein bS16 family	rpsP	-	-	ko:K02959	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S16
DYD3_k127_5171371_19	1267533.KB906737_gene1537	6.147e-08	66.0	COG3055@1|root,COG3485@1|root,COG3055@2|Bacteria,COG3485@2|Bacteria,3Y8A3@57723|Acidobacteria	57723|Acidobacteria	Q	protocatechuate 3,4-dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5177214_0	861299.J421_3137	2.031e-61	213.0	COG0542@1|root,COG0542@2|Bacteria,1ZT9Z@142182|Gemmatimonadetes	142182|Gemmatimonadetes	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD3_k127_5177214_1	1229909.NSED_07575	1.429e-44	166.0	arCOG10583@1|root,arCOG10583@2157|Archaea	2157|Archaea	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5177686_0	118173.KB235914_gene316	8.14e-76	271.0	COG3385@1|root,COG3385@2|Bacteria,1G0M7@1117|Cyanobacteria,1HA8V@1150|Oscillatoriales	1117|Cyanobacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5
DYD3_k127_5186560_0	485913.Krac_8363	5.522e-78	268.0	COG1662@1|root,COG3677@1|root,COG1662@2|Bacteria,COG3677@2|Bacteria,2G9MB@200795|Chloroflexi	200795|Chloroflexi	L	Putative ATPase subunit of terminase (gpP-like)	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23
DYD3_k127_5186560_1	272134.KB731324_gene2530	4.81e-41	153.0	COG4894@1|root,COG4894@2|Bacteria,1G3DI@1117|Cyanobacteria,1HFBY@1150|Oscillatoriales	1117|Cyanobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5209428_0	1298920.KI911353_gene2714	6.108e-12	77.0	COG3935@1|root,COG3935@2|Bacteria,1VAP8@1239|Firmicutes	1239|Firmicutes	L	DnaD domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5297376_2	1123242.JH636434_gene3562	0.0009065	44.0	COG1225@1|root,COG1225@2|Bacteria,2IZ7G@203682|Planctomycetes	203682|Planctomycetes	O	PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_5297376_1	290317.Cpha266_0771	5.664e-05	47.0	2EXE2@1|root,33QQK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5297376_0	1123053.AUDG01000018_gene3018	6.267e-46	166.0	COG0642@1|root,COG0642@2|Bacteria,1R54C@1224|Proteobacteria,1RNTM@1236|Gammaproteobacteria,1X29B@135613|Chromatiales	135613|Chromatiales	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HisKA
DYD3_k127_5335567_0	1469245.JFBG01000038_gene1805	2.147e-28	116.0	COG2998@1|root,COG2998@2|Bacteria,1MVSF@1224|Proteobacteria,1RZ6B@1236|Gammaproteobacteria	1236|Gammaproteobacteria	H	COG2998 ABC-type tungstate transport system permease component	tupA	-	-	ko:K05772	ko02010,map02010	M00186	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.2,3.A.1.6.4	-	-	PBP_like_2
DYD3_k127_5335567_1	314264.ROS217_11032	1.568e-11	64.0	COG2998@1|root,COG2998@2|Bacteria,1MVSF@1224|Proteobacteria,2TU33@28211|Alphaproteobacteria,46NNP@74030|Roseovarius	28211|Alphaproteobacteria	P	Sulfate tungstate uptake family ABC transporter, periplasmic substrate-binding protein	tupA	-	-	ko:K05772	ko02010,map02010	M00186	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.2,3.A.1.6.4	-	-	PBP_like_2
DYD3_k127_5335567_3	562970.Btus_0916	5.842e-05	50.0	COG2452@1|root,COG2452@2|Bacteria,1VN17@1239|Firmicutes	1239|Firmicutes	L	recombinase activity	-	-	-	-	-	-	-	-	-	-	-	-	DUF2281
DYD3_k127_5335567_2	1457393.AZ09_00340	2.533e-09	60.0	COG0583@1|root,COG0583@2|Bacteria,1N4P5@1224|Proteobacteria,2U6KC@28211|Alphaproteobacteria,2JZHP@204441|Rhodospirillales	204441|Rhodospirillales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5342239_0	1123248.KB893351_gene1791	3.552e-185	588.0	COG3039@1|root,COG3039@2|Bacteria,4PKH0@976|Bacteroidetes,1J0XZ@117747|Sphingobacteriia	976|Bacteroidetes	L	Transposase domain (DUF772)	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_6,DUF772
DYD3_k127_5373163_2	493475.GARC_4268	3.429e-76	269.0	COG1409@1|root,COG1409@2|Bacteria,1NA5Y@1224|Proteobacteria	1224|Proteobacteria	E	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
DYD3_k127_5373163_0	1234364.AMSF01000003_gene2430	5.11e-147	473.0	COG1858@1|root,COG1858@2|Bacteria,1MV70@1224|Proteobacteria,1RPPQ@1236|Gammaproteobacteria,1X493@135614|Xanthomonadales	135614|Xanthomonadales	P	cytochrome c peroxidase	-	-	1.11.1.5	ko:K00428	-	-	-	-	ko00000,ko01000	-	-	-	CCP_MauG,Cytochrom_C
DYD3_k127_5373163_3	227882.SAV_1072	1.64e-58	218.0	COG3673@1|root,COG3673@2|Bacteria,2ID7N@201174|Actinobacteria	201174|Actinobacteria	S	Uncharacterized alpha/beta hydrolase domain (DUF2235)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2235
DYD3_k127_5373163_4	1198114.AciX9_1011	3.717e-09	58.0	COG3440@1|root,COG3440@2|Bacteria	2|Bacteria	V	regulation of methylation-dependent chromatin silencing	hphI	-	-	ko:K07454	-	-	-	-	ko00000	-	-	-	HNH_2
DYD3_k127_5373163_5	367737.Abu_0558	0.0004873	46.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,42NNF@68525|delta/epsilon subdivisions,2YTMC@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	S	Sel1-like repeats.	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
DYD3_k127_5409286_1	930166.CD58_24885	3.128e-19	100.0	COG2801@1|root,COG2801@2|Bacteria,1N207@1224|Proteobacteria,1SZ0Q@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	leucine-zipper of insertion element IS481	-	-	-	-	-	-	-	-	-	-	-	-	HTH_32,rve
DYD3_k127_5409286_2	316067.Geob_2144	6.511e-17	84.0	COG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,42V07@68525|delta/epsilon subdivisions,2WRQ6@28221|Deltaproteobacteria,43VKP@69541|Desulfuromonadales	28221|Deltaproteobacteria	K	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	rpoZ	-	2.7.7.6	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb6
DYD3_k127_5409286_0	335543.Sfum_2115	6.506e-96	323.0	COG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,42NRM@68525|delta/epsilon subdivisions,2WJ0S@28221|Deltaproteobacteria,2MQC3@213462|Syntrophobacterales	28221|Deltaproteobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	rpoH	-	-	ko:K03086,ko:K03089	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
DYD3_k127_5409286_3	876269.ARWA01000001_gene2697	1.918e-07	55.0	COG3427@1|root,COG3427@2|Bacteria,1RHUC@1224|Proteobacteria,2U9HD@28211|Alphaproteobacteria,3NCKQ@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Carbon monoxide dehydrogenase subunit G (CoxG)	-	-	-	ko:K09386	-	-	-	-	ko00000	-	-	-	COXG
DYD3_k127_5454450_0	426117.M446_1228	3.038e-14	74.0	COG2079@1|root,COG2079@2|Bacteria,1R5CE@1224|Proteobacteria,2TUP7@28211|Alphaproteobacteria,1JX9Q@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	MmgE/PrpD family	-	-	-	-	-	-	-	-	-	-	-	-	MmgE_PrpD
DYD3_k127_5454450_1	1395587.P364_0107395	0.0004495	50.0	COG0739@1|root,COG0739@2|Bacteria,1TRWJ@1239|Firmicutes,4HB43@91061|Bacilli,26SG7@186822|Paenibacillaceae	91061|Bacilli	M	membrane	nlpD	-	-	-	-	-	-	-	-	-	-	-	G5,LysM,Peptidase_M23
DYD3_k127_5472432_0	1267535.KB906767_gene2036	2.38e-66	230.0	COG3335@1|root,COG3335@2|Bacteria	2|Bacteria	L	DDE superfamily endonuclease	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3
DYD3_k127_5472432_1	1340493.JNIF01000003_gene2055	8.945e-44	164.0	COG3415@1|root,COG3415@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	ko:K07499	-	-	-	-	ko00000	-	-	-	HTH_23,HTH_29,HTH_32,HTH_33
DYD3_k127_5476015_0	1120956.JHZK01000029_gene67	8.689e-40	154.0	COG2823@1|root,COG2823@2|Bacteria,1RDBG@1224|Proteobacteria,2U89Q@28211|Alphaproteobacteria,1JQ29@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Periplasmic or secreted lipoprotein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5476015_1	316055.RPE_3942	7.794e-23	104.0	COG3945@1|root,COG3945@2|Bacteria,1RM01@1224|Proteobacteria,2U552@28211|Alphaproteobacteria,3JXTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Hemerythrin HHE cation binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Hemerythrin
DYD3_k127_5485920_7	1123037.AUDE01000054_gene3	1.49e-07	59.0	2EHH2@1|root,33B8Z@2|Bacteria,4NXJU@976|Bacteroidetes,1I827@117743|Flavobacteriia	976|Bacteroidetes	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_3
DYD3_k127_5485920_8	404380.Gbem_1914	0.0006911	42.0	COG1943@1|root,COG1943@2|Bacteria,1RBFM@1224|Proteobacteria,42QPI@68525|delta/epsilon subdivisions,2WMUC@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	Transposase	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_5485920_5	377629.TERTU_2639	2.016e-70	243.0	COG0386@1|root,COG0386@2|Bacteria,1RDR8@1224|Proteobacteria,1S3WV@1236|Gammaproteobacteria,2PNPD@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	O	Glutathione peroxidase	gpwA	-	1.11.1.9	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	-	R00274,R07034,R07035	RC00011,RC00982	ko00000,ko00001,ko01000	-	-	-	GSHPx
DYD3_k127_5485920_0	472759.Nhal_3962	0.0	1243.0	COG4096@1|root,COG4096@2|Bacteria,1QTS7@1224|Proteobacteria,1RN63@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	Type I site-specific restriction-modification system R (restriction) subunit and related helicases	-	-	3.1.21.3	ko:K01153	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	DUF4145,EcoEI_R_C,HSDR_N,Helicase_C,ResIII
DYD3_k127_5485920_4	94122.Shewana3_2028	6.701e-100	339.0	COG0732@1|root,COG0732@2|Bacteria,1RGR5@1224|Proteobacteria,1RZN0@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	DNA specificity domain	hsdS	-	3.1.21.3	ko:K01154	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	Methylase_S
DYD3_k127_5485920_1	472759.Nhal_3964	4.704e-227	711.0	COG0286@1|root,COG0286@2|Bacteria,1MW3A@1224|Proteobacteria,1RRVF@1236|Gammaproteobacteria,1WXG6@135613|Chromatiales	135613|Chromatiales	V	PFAM N-6 DNA methylase	-	-	2.1.1.72	ko:K03427	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	HsdM_N,N6_Mtase
DYD3_k127_5485920_3	1121921.KB898706_gene3004	1.73e-122	399.0	COG1715@1|root,COG1715@2|Bacteria,1Q2VY@1224|Proteobacteria,1RYEE@1236|Gammaproteobacteria,2PNKR@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	V	Restriction endonuclease	mrr	GO:0001101,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009295,GO:0009415,GO:0009628,GO:0009987,GO:0010035,GO:0015666,GO:0016787,GO:0016788,GO:0032067,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051599,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901700	-	ko:K07448	-	-	-	-	ko00000,ko02048	-	-	-	HARE-HTH,Mrr_N,Mrr_cat
DYD3_k127_5485920_6	1055815.AYYA01000052_gene1300	4.611e-56	203.0	COG3654@1|root,COG3943@1|root,COG3654@2|Bacteria,COG3943@2|Bacteria,1MWKW@1224|Proteobacteria,1RPNB@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	COG3943 Virulence protein	-	-	-	-	-	-	-	-	-	-	-	-	Fic,Virulence_RhuM
DYD3_k127_5485920_2	314285.KT71_17656	1.1e-145	471.0	COG1373@1|root,COG1373@2|Bacteria,1MWBT@1224|Proteobacteria,1RRXR@1236|Gammaproteobacteria,1JAET@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	Domain of unknown function (DUF4143)	-	-	-	ko:K07133	-	-	-	-	ko00000	-	-	-	AAA_14,DUF4143
DYD3_k127_5488651_1	1306174.JODP01000013_gene7517	9.312e-25	118.0	COG4972@1|root,COG4972@2|Bacteria,2IBNF@201174|Actinobacteria	201174|Actinobacteria	NU	pilus assembly protein PilM	pilM	-	-	ko:K02662	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	PilM_2
DYD3_k127_5488651_0	401053.AciPR4_1328	4.09e-25	108.0	COG0073@1|root,COG0143@1|root,COG0073@2|Bacteria,COG0143@2|Bacteria,3Y2I2@57723|Acidobacteria,2JIC5@204432|Acidobacteriia	204432|Acidobacteriia	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	metG	-	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1g,tRNA_bind
DYD3_k127_54889_2	391600.ABRU01000040_gene1777	5.066e-36	143.0	COG3108@1|root,COG3108@2|Bacteria,1RICX@1224|Proteobacteria,2UDAG@28211|Alphaproteobacteria,2KJH3@204458|Caulobacterales	204458|Caulobacterales	S	D-alanyl-D-alanine carboxypeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M15_4
DYD3_k127_54889_4	1249627.D779_3214	5.796e-24	107.0	COG0250@1|root,COG0250@2|Bacteria,1N01W@1224|Proteobacteria,1S91B@1236|Gammaproteobacteria,1WZ5M@135613|Chromatiales	135613|Chromatiales	K	Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components	rfaH	-	-	ko:K05785	-	-	-	-	ko00000,ko03000	-	-	-	NusG
DYD3_k127_54889_0	1395516.PMO01_05160	1.611e-109	361.0	COG2404@1|root,COG2404@2|Bacteria,1MXEH@1224|Proteobacteria,1SADM@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	phosphoesterase DHHA1	-	-	-	-	-	-	-	-	-	-	-	-	DHHA1
DYD3_k127_54889_5	1030157.AFMP01000057_gene765	1.139e-14	77.0	2CC4A@1|root,2ZNID@2|Bacteria,1P8KR@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_54889_6	1392540.P256_00724	3.674e-12	70.0	2BRZC@1|root,32KZQ@2|Bacteria,1Q31I@1224|Proteobacteria,1RSVN@1236|Gammaproteobacteria,3NRT9@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_54889_3	667121.ET1_07_00730	3.884e-25	108.0	2D7I9@1|root,32UHG@2|Bacteria,1N3YY@1224|Proteobacteria,1SBD8@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1364)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1364
DYD3_k127_54889_1	1049564.TevJSym_aq00260	1.175e-38	158.0	COG0592@1|root,COG0592@2|Bacteria,1MVD9@1224|Proteobacteria,1RMNP@1236|Gammaproteobacteria,1J4Z6@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	dnaN	GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0022616,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234	2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3
DYD3_k127_551303_0	744985.HIMB59_00015010	1.471e-55	210.0	COG1004@1|root,COG1004@2|Bacteria	2|Bacteria	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	-	-	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_551303_1	515635.Dtur_0573	2.882e-22	101.0	COG1086@1|root,COG1086@2|Bacteria	2|Bacteria	GM	Polysaccharide biosynthesis protein	pglF	GO:0008150,GO:0043900,GO:0043902,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:1900190,GO:1900192	4.2.1.115,4.2.1.135,4.2.1.46	ko:K01710,ko:K15894,ko:K15912,ko:K19421	ko00520,ko00521,ko00523,ko00525,ko01055,ko01130,map00520,map00521,map00523,map00525,map01055,map01130	M00793	R06513,R09697	RC00402,RC02609	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_binding_3,Polysacc_synt_2
DYD3_k127_5518179_6	391615.ABSJ01000027_gene242	6.053e-136	447.0	COG1702@1|root,COG1702@2|Bacteria,1MVDV@1224|Proteobacteria,1RP2Y@1236|Gammaproteobacteria,1J4JM@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	T	Phosphate starvation-inducible protein PhoH	ybeZ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	ko:K06217	-	-	-	-	ko00000	-	-	-	PhoH
DYD3_k127_5518179_0	396588.Tgr7_2292	7.189e-223	698.0	COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,1RMD8@1236|Gammaproteobacteria,1WWN1@135613|Chromatiales	135613|Chromatiales	J	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	miaB	-	2.8.4.3	ko:K06168	-	-	R10645,R10646,R10647	RC00003,RC00980,RC03221,RC03222	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,TRAM,UPF0004
DYD3_k127_5518179_2	1485545.JQLW01000009_gene44	1.53e-194	625.0	COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria	1224|Proteobacteria	GM	Polysaccharide biosynthesis protein	pglF	-	4.2.1.135	ko:K15912	ko00520,map00520	-	-	-	ko00000,ko00001,ko01000	-	-	-	CoA_binding_3,Polysacc_synt_2
DYD3_k127_5518179_4	1489678.RDMS_08160	6.608e-167	533.0	COG0399@1|root,COG0399@2|Bacteria,1WM15@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	E	DegT/DnrJ/EryC1/StrS aminotransferase family	-	-	-	-	-	-	-	-	-	-	-	-	DegT_DnrJ_EryC1
DYD3_k127_5518179_12	911239.CF149_13707	2.566e-52	192.0	COG0110@1|root,COG2148@1|root,COG0110@2|Bacteria,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,1RMMN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	COG2148 Sugar transferases involved in lipopolysaccharide synthesis	epsL	-	-	-	-	-	-	-	-	-	-	-	Bac_transf
DYD3_k127_5518179_10	1384057.CD33_18380	2.084e-75	257.0	COG2148@1|root,COG2148@2|Bacteria,1TP49@1239|Firmicutes,4HFZV@91061|Bacilli,3J03U@400634|Lysinibacillus	91061|Bacilli	M	Bacterial sugar transferase	epsL	GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0016740,GO:0016772,GO:0016780,GO:0043170,GO:0044238,GO:0071704	-	ko:K13012,ko:K19428	-	-	-	-	ko00000,ko01000,ko01005	-	-	-	Bac_transf
DYD3_k127_5518179_5	1121939.L861_02495	1.556e-137	448.0	COG0438@1|root,COG0438@2|Bacteria,1MY5T@1224|Proteobacteria,1RS9J@1236|Gammaproteobacteria,1XM49@135619|Oceanospirillales	135619|Oceanospirillales	M	Glycosyl transferase 4-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glycos_transf_1
DYD3_k127_5518179_11	502025.Hoch_0178	4.957e-71	268.0	COG3391@1|root,COG3391@2|Bacteria,1Q6NR@1224|Proteobacteria,433G0@68525|delta/epsilon subdivisions,2WXM3@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	amine dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5518179_21	391603.FBALC1_03192	2.837e-07	63.0	COG2244@1|root,COG2244@2|Bacteria,4NGVA@976|Bacteroidetes,1IJ0M@117743|Flavobacteriia	976|Bacteroidetes	S	Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt,Polysacc_synt_3,Polysacc_synt_C
DYD3_k127_5518179_16	1173023.KE650771_gene2529	1.56e-27	118.0	COG0110@1|root,COG0110@2|Bacteria,1G2PV@1117|Cyanobacteria,1JHR7@1189|Stigonemataceae	1117|Cyanobacteria	S	Hexapeptide repeat of succinyl-transferase	-	-	2.3.1.18	ko:K00633	-	-	-	-	ko00000,ko01000	-	-	-	GAF_2,Hexapep,Hexapep_2
DYD3_k127_5518179_1	1499967.BAYZ01000086_gene5146	4.304e-204	654.0	COG0037@1|root,COG0449@1|root,COG0037@2|Bacteria,COG0449@2|Bacteria	2|Bacteria	M	glutamine-fructose-6-phosphate transaminase (isomerizing) activity	tilS	-	2.6.1.16,5.3.1.8,5.3.1.9,6.3.4.19	ko:K00820,ko:K04075,ko:K15916	ko00010,ko00030,ko00051,ko00250,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,ko04931,map00010,map00030,map00051,map00250,map00500,map00520,map01100,map01110,map01120,map01130,map01200,map04931	M00001,M00004,M00114	R00768,R01819,R02739,R02740,R03321,R09597	RC00010,RC00163,RC00376,RC00563,RC02633,RC02634,RC02752	ko00000,ko00001,ko00002,ko01000,ko01002,ko03016	-	-	-	ATP_bind_3,GATase_6,TilS,TilS_C,bact-PGI_C
DYD3_k127_5518179_7	1499967.BAYZ01000085_gene5187	1.647e-129	421.0	COG0463@1|root,COG0463@2|Bacteria,2NS3Y@2323|unclassified Bacteria	2|Bacteria	M	Glycosyltransferase like family 2	-	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2
DYD3_k127_5518179_9	1499967.BAYZ01000085_gene5186	1.717e-104	349.0	COG0451@1|root,COG0451@2|Bacteria,2NNNX@2323|unclassified Bacteria	2|Bacteria	GM	NAD(P)H-binding	wbmF	-	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
DYD3_k127_5518179_8	367737.Abu_0691	6.966e-118	390.0	COG0438@1|root,COG0438@2|Bacteria,1MWU0@1224|Proteobacteria,42S75@68525|delta/epsilon subdivisions,2YR0M@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_5518179_19	572547.Amico_1728	3.664e-19	101.0	2FD2G@1|root,3454Y@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5518179_14	1245471.PCA10_19800	9.298e-35	144.0	COG0438@1|root,COG0438@2|Bacteria,1P4VC@1224|Proteobacteria	1224|Proteobacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5518179_17	204536.SULAZ_0348	9.399e-22	108.0	COG2244@1|root,COG2244@2|Bacteria	2|Bacteria	S	polysaccharide biosynthetic process	wzx	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt_3
DYD3_k127_5518179_20	172088.AUGA01000008_gene977	2.251e-12	68.0	COG0381@1|root,COG0381@2|Bacteria,1QUYI@1224|Proteobacteria,2TWD4@28211|Alphaproteobacteria,3JUAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	UDP-N-acetylglucosamine 2-epimerase	-	-	5.1.3.23	ko:K13019	ko00520,map00520	-	R09600	RC00290	ko00000,ko00001,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_5518179_18	1216976.AX27061_5897	1.998e-21	97.0	COG0110@1|root,COG0110@2|Bacteria,1MZV9@1224|Proteobacteria,2VN51@28216|Betaproteobacteria,3T51S@506|Alcaligenaceae	28216|Betaproteobacteria	S	Hexapeptide repeat of succinyl-transferase	bplB	-	2.3.1.201	ko:K13018	ko00520,map00520	-	R10100	RC00004,RC00166	ko00000,ko00001,ko01000,ko01005	-	-	-	Hexapep
DYD3_k127_5518179_3	314278.NB231_16768	3.896e-175	554.0	COG0673@1|root,COG0673@2|Bacteria,1MUP0@1224|Proteobacteria,1S1E3@1236|Gammaproteobacteria,1WZQT@135613|Chromatiales	135613|Chromatiales	S	Oxidoreductase family, C-terminal alpha/beta domain	-	-	1.1.1.335	ko:K13020	ko00520,map00520	-	R10140	RC00182	ko00000,ko00001,ko01000,ko01005	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_5518179_13	713587.THITH_00410	1.415e-51	188.0	COG0250@1|root,COG0250@2|Bacteria,1N01W@1224|Proteobacteria,1S91B@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. RfaH is recruited into a multi-component RNA polymerase complex by the ops element, which is a short conserved DNA sequence located downstream of the main promoter of these operons. Once bound, RfaH suppresses pausing and inhibits Rho- dependent and intrinsic termination at a subset of sites. Termination signals are bypassed, which allows complete synthesis of long RNA chains	rfaH	GO:0001000,GO:0001073,GO:0001121,GO:0001124,GO:0003674,GO:0003676,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008494,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031554,GO:0031564,GO:0032268,GO:0032270,GO:0032774,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045727,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:2000112,GO:2001141	-	ko:K05785	-	-	-	-	ko00000,ko03000	-	-	-	NusG
DYD3_k127_5518179_15	314278.NB231_16763	3.68e-32	129.0	COG1846@1|root,COG1846@2|Bacteria,1N0TY@1224|Proteobacteria,1SADN@1236|Gammaproteobacteria,1WZ4E@135613|Chromatiales	135613|Chromatiales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_24
DYD3_k127_5549656_3	1382304.JNIL01000001_gene742	2.601e-84	285.0	COG0740@1|root,COG0740@2|Bacteria,1TQ91@1239|Firmicutes,4HA8J@91061|Bacilli,2783W@186823|Alicyclobacillaceae	91061|Bacilli	OU	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	clpP	GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0006355,GO:0006508,GO:0006515,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	CLP_protease
DYD3_k127_5549656_6	316274.Haur_1712	9.579e-54	194.0	COG0221@1|root,COG0221@2|Bacteria,2G6T4@200795|Chloroflexi,375J0@32061|Chloroflexia	32061|Chloroflexia	C	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions	ppa	-	3.6.1.1	ko:K01507	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyrophosphatase
DYD3_k127_5549656_1	156889.Mmc1_3729	2.802e-89	311.0	COG0195@1|root,COG0195@2|Bacteria,1MWT7@1224|Proteobacteria,2TRQN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Participates in both transcription termination and antitermination	nusA	-	-	ko:K02600	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	HHH_5,KH_5,NusA_N,S1
DYD3_k127_5549656_0	373903.Hore_05970	2.41e-132	442.0	COG2804@1|root,COG2804@2|Bacteria,1TPGE@1239|Firmicutes,247KA@186801|Clostridia,3WAAY@53433|Halanaerobiales	186801|Clostridia	NU	PFAM type II secretion system protein E	-	-	-	ko:K02454,ko:K02652	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	T2SSE,T2SSE_N
DYD3_k127_5549656_5	694431.DESACE_07335	2.064e-55	209.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,42NES@68525|delta/epsilon subdivisions,2WJ0V@28221|Deltaproteobacteria,2M6F4@213113|Desulfurellales	28221|Deltaproteobacteria	NU	Type II secretion system (T2SS), protein F	pilC	-	-	ko:K02653	-	-	-	-	ko00000,ko02035,ko02044	3.A.15.2	-	-	T2SSF
DYD3_k127_5549656_9	1121428.DESHY_60062___1	1.868e-06	61.0	COG2165@1|root,COG2165@2|Bacteria,1W5JZ@1239|Firmicutes,256FM@186801|Clostridia	186801|Clostridia	NU	Prokaryotic N-terminal methylation motif	-	-	-	-	-	-	-	-	-	-	-	-	N_methyl
DYD3_k127_5549656_7	1122918.KB907280_gene264	1.005e-44	171.0	COG0149@1|root,COG0149@2|Bacteria,1TP2F@1239|Firmicutes,4HAPT@91061|Bacilli,26TDJ@186822|Paenibacillaceae	91061|Bacilli	G	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	tpiA	-	5.3.1.1	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01015	RC00423	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	TIM
DYD3_k127_5549656_10	296587.XP_002501228.1	3.682e-06	55.0	2CMBS@1|root,2QPX1@2759|Eukaryota,37TPJ@33090|Viridiplantae,34MQ9@3041|Chlorophyta	3041|Chlorophyta	S	Cyclic phosphodiesterase-like protein	-	-	-	-	-	-	-	-	-	-	-	-	CPDase
DYD3_k127_5549656_2	237368.SCABRO_02504	1.802e-86	299.0	COG0126@1|root,COG0126@2|Bacteria,2IYIS@203682|Planctomycetes	203682|Planctomycetes	F	Belongs to the phosphoglycerate kinase family	pgk	-	2.7.2.3	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01512	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
DYD3_k127_5549656_8	1298858.AUEL01000010_gene3970	1.433e-29	122.0	COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,2U956@28211|Alphaproteobacteria,43JX0@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	FG	HIT family hydrolase	hit	-	-	ko:K02503	-	-	-	-	ko00000,ko04147	-	-	-	HIT
DYD3_k127_5549656_4	420246.GTNG_2511	3.494e-75	265.0	COG0608@1|root,COG4199@1|root,COG0608@2|Bacteria,COG4199@2|Bacteria,1TPXE@1239|Firmicutes,4H9UP@91061|Bacilli,1WE5V@129337|Geobacillus	91061|Bacilli	L	Single-strand DNA-specific exonuclease, C terminal domain	recJ	-	-	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DHH,DHHA1,ssDNA-exonuc_C
DYD3_k127_5568644_1	926569.ANT_12290	7.16e-12	72.0	COG3464@1|root,COG3464@2|Bacteria,2G9B1@200795|Chloroflexi	200795|Chloroflexi	L	Transposase IS66 family	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS66
DYD3_k127_5568644_0	926569.ANT_26050	1.159e-42	169.0	COG5433@1|root,COG5433@2|Bacteria,2G91M@200795|Chloroflexi	200795|Chloroflexi	L	PFAM transposase, IS4 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_assoc
DYD3_k127_5568644_2	485913.Krac_2355	5.047e-05	47.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,2G9RC@200795|Chloroflexi	200795|Chloroflexi	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3,HTH_32
DYD3_k127_5610236_0	382464.ABSI01000011_gene2403	5.285e-195	615.0	COG3664@1|root,COG3664@2|Bacteria,46U9J@74201|Verrucomicrobia,2IV6J@203494|Verrucomicrobiae	203494|Verrucomicrobiae	G	Glycosyl hydrolases family 39	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_39
DYD3_k127_5610236_9	1408813.AYMG01000006_gene4233	6.95e-05	46.0	COG3664@1|root,COG3664@2|Bacteria,4NHQ0@976|Bacteroidetes,1INQN@117747|Sphingobacteriia	976|Bacteroidetes	G	PFAM glycoside hydrolase family 39	-	-	3.2.1.37	ko:K01198	ko00520,ko01100,map00520,map01100	-	R01433	RC00467	ko00000,ko00001,ko01000	-	GH43	-	Glyco_hydro_39
DYD3_k127_5610236_8	713586.KB900536_gene1474	1.347e-06	53.0	28W7P@1|root,2ZI89@2|Bacteria,1N2SJ@1224|Proteobacteria,1SA34@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5610236_2	396588.Tgr7_2534	1.966e-46	175.0	COG3047@1|root,COG3047@2|Bacteria,1NUZJ@1224|Proteobacteria,1RRRC@1236|Gammaproteobacteria,1X1AR@135613|Chromatiales	135613|Chromatiales	M	OmpW family	-	-	-	ko:K07275	-	-	-	-	ko00000	-	-	-	OmpW
DYD3_k127_5610236_4	502025.Hoch_6710	4.646e-30	139.0	COG3391@1|root,COG3391@2|Bacteria,1Q6NR@1224|Proteobacteria,433G0@68525|delta/epsilon subdivisions,2WXM3@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	amine dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5610236_3	1191460.F959_00013	3.164e-40	151.0	2B07T@1|root,31SIM@2|Bacteria,1QQ3R@1224|Proteobacteria,1TNX2@1236|Gammaproteobacteria,3NRH7@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5610236_7	1234364.AMSF01000036_gene234	2.17e-17	89.0	2E6CH@1|root,33107@2|Bacteria,1NF6B@1224|Proteobacteria,1SURP@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5610236_1	700598.Niako_3302	6.738e-147	502.0	COG1520@1|root,COG1520@2|Bacteria	700598.Niako_3302|-	S	amino acid activation for nonribosomal peptide biosynthetic process	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5610236_5	1408444.JHYC01000037_gene1889	3.75e-25	123.0	COG2706@1|root,COG2706@2|Bacteria,1RB38@1224|Proteobacteria,1SNAF@1236|Gammaproteobacteria,1JE2M@118969|Legionellales	118969|Legionellales	G	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5623743_1	42345.XP_008779617.1	1.386e-29	117.0	COG2801@1|root,KOG0017@2759|Eukaryota,37M1D@33090|Viridiplantae,3GCV5@35493|Streptophyta,3M3S9@4447|Liliopsida	35493|Streptophyta	L	Retrotransposon gag protein	-	-	-	-	-	-	-	-	-	-	-	-	RVT_1,Retrotrans_gag,zf-CCHC
DYD3_k127_5623743_0	42345.XP_008779617.1	3.569e-166	540.0	COG2801@1|root,KOG0017@2759|Eukaryota,37M1D@33090|Viridiplantae,3GCV5@35493|Streptophyta,3M3S9@4447|Liliopsida	35493|Streptophyta	L	Retrotransposon gag protein	-	-	-	-	-	-	-	-	-	-	-	-	RVT_1,Retrotrans_gag,zf-CCHC
DYD3_k127_5649316_41	1217720.ALOX01000006_gene1651	1.332e-11	71.0	COG0563@1|root,COG0563@2|Bacteria,1N0HQ@1224|Proteobacteria	1224|Proteobacteria	F	COG0563 Adenylate kinase and related kinases	flaR	-	-	-	-	-	-	-	-	-	-	-	AAA_18,AAA_33,SKI
DYD3_k127_5649316_13	1112212.JH584235_gene903	5.528e-63	225.0	COG0561@1|root,COG0561@2|Bacteria,1R9NT@1224|Proteobacteria,2U4HA@28211|Alphaproteobacteria,2K0GF@204457|Sphingomonadales	204457|Sphingomonadales	S	hydrolases of the HAD superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_3,PMM
DYD3_k127_5649316_10	518766.Rmar_2615	5.303e-75	276.0	COG2152@1|root,COG2152@2|Bacteria,4NG7B@976|Bacteroidetes	976|Bacteroidetes	G	PFAM glycosidase, PH1107-related	-	-	2.4.1.339,2.4.1.340	ko:K20885	-	-	R11397,R11398	RC00049,RC02748	ko00000,ko01000	-	GH130	-	Glyco_hydro_130
DYD3_k127_5649316_18	335541.Swol_1919	1.87e-49	192.0	COG2152@1|root,COG2152@2|Bacteria,1TYI2@1239|Firmicutes,25DIW@186801|Clostridia	186801|Clostridia	G	PFAM glycosidase, PH1107-related	-	-	2.4.1.339,2.4.1.340	ko:K20885	-	-	R11397,R11398	RC00049,RC02748	ko00000,ko01000	-	GH130	-	Glyco_hydro_130
DYD3_k127_5649316_30	1459636.NTE_02478	2.159e-27	116.0	COG0836@1|root,arCOG02427@2157|Archaea	2157|Archaea	M	TIGRFAM Mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase	manC	-	2.7.7.13,5.3.1.8	ko:K00971,ko:K16011	ko00051,ko00520,ko01100,ko01110,ko01130,ko02025,map00051,map00520,map01100,map01110,map01130,map02025	M00114,M00361,M00362	R00885,R01819	RC00002,RC00376	ko00000,ko00001,ko00002,ko01000	-	-	iAF692.Mbar_A0229	MannoseP_isomer,NTP_transferase
DYD3_k127_5649316_32	526222.Desal_1487	3.194e-25	110.0	COG2246@1|root,COG2246@2|Bacteria,1Q28J@1224|Proteobacteria,43ER8@68525|delta/epsilon subdivisions,2X9KU@28221|Deltaproteobacteria,2MFRF@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	GtrA-like protein	-	-	-	-	-	-	-	-	-	-	-	-	GtrA
DYD3_k127_5649316_20	1005048.CFU_1152	3.847e-42	160.0	COG3812@1|root,COG3812@2|Bacteria,1RGUV@1224|Proteobacteria,2VS54@28216|Betaproteobacteria,4740R@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Domain of unknown function (DUF1993)	-	-	-	ko:K09983	-	-	-	-	ko00000	-	-	-	DUF1993
DYD3_k127_5649316_6	1134474.O59_002429	1.403e-90	304.0	COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,1RMC5@1236|Gammaproteobacteria,1FGNH@10|Cellvibrio	1236|Gammaproteobacteria	V	AAA domain, putative AbiEii toxin, Type IV TA system	yadG	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_5649316_7	1166948.JPZL01000001_gene2647	3.453e-87	295.0	COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,1RP0Z@1236|Gammaproteobacteria,1XH6D@135619|Oceanospirillales	135619|Oceanospirillales	V	Transport permease protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_5649316_25	1408418.JNJH01000025_gene74	3.639e-33	136.0	COG0586@1|root,COG0586@2|Bacteria,1N958@1224|Proteobacteria,2UY37@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SNARE associated Golgi protein	-	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD3_k127_5649316_43	134676.ACPL_606	9.101e-11	70.0	COG0586@1|root,COG0586@2|Bacteria,2GKKC@201174|Actinobacteria,4DD0V@85008|Micromonosporales	201174|Actinobacteria	S	SNARE associated Golgi protein	-	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD3_k127_5649316_14	1112214.AHIS01000095_gene703	1.346e-58	211.0	COG1216@1|root,COG1216@2|Bacteria,1R5GW@1224|Proteobacteria,2TTEN@28211|Alphaproteobacteria,2K3YZ@204457|Sphingomonadales	204457|Sphingomonadales	S	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_3,Glycos_transf_2
DYD3_k127_5649316_9	909663.KI867150_gene1492	2.605e-85	290.0	COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,42N67@68525|delta/epsilon subdivisions,2WKPK@28221|Deltaproteobacteria,2MRWV@213462|Syntrophobacterales	28221|Deltaproteobacteria	V	Bacitracin resistance protein BacA	uppP	-	3.6.1.27	ko:K06153	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	BacA
DYD3_k127_5649316_22	717605.Theco_1296	2.386e-39	161.0	COG5002@1|root,COG5002@2|Bacteria,1TQ1H@1239|Firmicutes,4HB1B@91061|Bacilli,26T15@186822|Paenibacillaceae	91061|Bacilli	T	Histidine kinase	phoR	-	2.7.13.3	ko:K07636	ko02020,map02020	M00434	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,PAS,PAS_4,PAS_9,sCache_like
DYD3_k127_5649316_11	335543.Sfum_2007	3.687e-67	236.0	COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,42N90@68525|delta/epsilon subdivisions,2WJUU@28221|Deltaproteobacteria,2MRIT@213462|Syntrophobacterales	28221|Deltaproteobacteria	T	Transcriptional regulatory protein, C terminal	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_5649316_8	1242864.D187_006392	3.672e-86	311.0	COG0642@1|root,COG0745@1|root,COG5002@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,42M0Y@68525|delta/epsilon subdivisions,2X791@28221|Deltaproteobacteria,2YUF6@29|Myxococcales	28221|Deltaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_3,PAS_4,Response_reg
DYD3_k127_5649316_33	1121024.AUCD01000024_gene761	5.437e-25	116.0	COG1876@1|root,COG1876@2|Bacteria,1V1F7@1239|Firmicutes,4HBR1@91061|Bacilli,27FNF@186828|Carnobacteriaceae	91061|Bacilli	M	D-alanyl-D-alanine carboxypeptidase	vanYB	-	3.4.17.14	ko:K07260	ko00550,ko01100,ko01502,ko02020,map00550,map01100,map01502,map02020	M00651	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504	-	-	-	VanY
DYD3_k127_5649316_17	1205680.CAKO01000040_gene808	1.123e-51	189.0	2AY4N@1|root,31Q6J@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5649316_40	1121013.P873_09480	4.853e-13	79.0	COG0130@1|root,COG0130@2|Bacteria,1MV0N@1224|Proteobacteria,1RMKP@1236|Gammaproteobacteria,1X37T@135614|Xanthomonadales	135614|Xanthomonadales	J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	truB	GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481	5.4.99.25	ko:K03177	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	TruB-C_2,TruB_C,TruB_C_2,TruB_N
DYD3_k127_5649316_28	864069.MicloDRAFT_00054080	4.779e-32	129.0	COG2940@1|root,COG2940@2|Bacteria,1MWFB@1224|Proteobacteria,2U05I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SET domain	-	-	-	ko:K07117	-	-	-	-	ko00000	-	-	-	SET
DYD3_k127_5649316_12	1121091.AUMP01000003_gene2840	5.288e-63	228.0	COG1054@1|root,COG1054@2|Bacteria,1TRG7@1239|Firmicutes,4HA0J@91061|Bacilli	91061|Bacilli	S	Belongs to the UPF0176 family	ybfQ	-	-	ko:K07146	-	-	-	-	ko00000	-	-	-	Rhodanese,Rhodanese_C
DYD3_k127_5649316_38	1112214.AHIS01000054_gene2558	2.841e-13	74.0	COG1278@1|root,COG1278@2|Bacteria,1QRMX@1224|Proteobacteria,2V17U@28211|Alphaproteobacteria,2KB7U@204457|Sphingomonadales	204457|Sphingomonadales	K	Cold shock protein domain	-	-	-	-	-	-	-	-	-	-	-	-	CSD
DYD3_k127_5649316_37	515635.Dtur_0923	1.415e-16	88.0	COG0461@1|root,COG0461@2|Bacteria	2|Bacteria	F	orotate phosphoribosyltransferase activity	pyrE	-	2.4.2.10	ko:K00762	ko00240,ko01100,map00240,map01100	M00051	R01870	RC00611	ko00000,ko00001,ko00002,ko01000	-	-	-	Pribosyltran
DYD3_k127_5649316_29	1304878.AUGD01000003_gene2594	2.969e-31	134.0	COG0284@1|root,COG0284@2|Bacteria,1MW2C@1224|Proteobacteria,2TTB3@28211|Alphaproteobacteria,3JTIS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)	pyrF	GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.1.23	ko:K01591	ko00240,ko01100,map00240,map01100	M00051	R00965	RC00409	ko00000,ko00001,ko00002,ko01000	-	-	-	OMPdecase
DYD3_k127_5649316_27	382464.ABSI01000005_gene1309	1.792e-32	130.0	COG1694@1|root,COG1694@2|Bacteria,46W6C@74201|Verrucomicrobia,2IW7F@203494|Verrucomicrobiae	203494|Verrucomicrobiae	S	MazG-like family	-	-	-	-	-	-	-	-	-	-	-	-	MazG-like
DYD3_k127_5649316_23	96561.Dole_2313	4.803e-36	144.0	COG3829@1|root,COG3829@2|Bacteria,1NU8B@1224|Proteobacteria,42MEA@68525|delta/epsilon subdivisions,2WIW6@28221|Deltaproteobacteria,2MI74@213118|Desulfobacterales	28221|Deltaproteobacteria	KT	Sigma-54 interaction domain	-	-	2.1.1.80	ko:K00575	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko01000,ko02035	-	-	-	HTH_8,PAS_4,PAS_9,Sigma54_activat
DYD3_k127_5649316_42	1121087.AUCK01000006_gene670	5.644e-11	70.0	COG1595@1|root,COG1595@2|Bacteria,1V89Y@1239|Firmicutes,4HIY2@91061|Bacilli,1ZHHR@1386|Bacillus	91061|Bacilli	K	Sigma-70, region 4	sigX_2	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_5649316_44	1112214.AHIS01000014_gene119	8.801e-10	60.0	2EFZF@1|root,339RM@2|Bacteria,1Q79X@1224|Proteobacteria,2UWHC@28211|Alphaproteobacteria,2K7QX@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5649316_39	871963.Desdi_1829	4.23e-13	75.0	COG0762@1|root,COG0762@2|Bacteria,1VN1M@1239|Firmicutes,24X1E@186801|Clostridia,265M7@186807|Peptococcaceae	186801|Clostridia	S	YGGT family	-	-	-	-	-	-	-	-	-	-	-	-	YGGT
DYD3_k127_5649316_35	224325.AF_1598	4e-21	97.0	arCOG06137@1|root,arCOG06137@2157|Archaea	2157|Archaea	S	Domain of unknown function (DUF4234)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4234
DYD3_k127_5649316_36	84531.JMTZ01000078_gene2198	6.315e-20	94.0	2DBI3@1|root,32TXG@2|Bacteria,1RF32@1224|Proteobacteria,1SR7F@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5649316_21	521011.Mpal_1494	2.719e-40	153.0	COG5507@1|root,arCOG09468@2157|Archaea,2Y13Q@28890|Euryarchaeota,2NB85@224756|Methanomicrobia	224756|Methanomicrobia	S	Protein of unknown function (DUF1428)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1428
DYD3_k127_5649316_19	1150864.MILUP08_44853	3.825e-48	189.0	COG1365@1|root,COG1365@2|Bacteria,2GR2T@201174|Actinobacteria,4D8TQ@85008|Micromonosporales	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5649316_24	1121324.CLIT_11c02670	6.79e-34	138.0	2E74N@1|root,331P2@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5649316_16	192952.MM_0963	3.376e-53	193.0	COG3476@1|root,arCOG04434@2157|Archaea,2XYQD@28890|Euryarchaeota,2NAZX@224756|Methanomicrobia	224756|Methanomicrobia	T	TspO/MBR family	-	-	-	ko:K05770	ko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166	-	-	-	ko00000,ko00001,ko02000	9.A.24	-	-	TspO_MBR
DYD3_k127_5649316_26	485916.Dtox_3727	4.419e-33	141.0	COG0616@1|root,COG0616@2|Bacteria	2|Bacteria	OU	serine-type peptidase activity	sppA	-	-	ko:K04773	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_S49,Phage_capsid,SDH_sah
DYD3_k127_5649316_46	340099.Teth39_0091	1.383e-05	49.0	2DKAB@1|root,3090P@2|Bacteria,1U499@1239|Firmicutes,255GP@186801|Clostridia,42IWW@68295|Thermoanaerobacterales	186801|Clostridia	S	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_17
DYD3_k127_5649316_5	1123008.KB905696_gene3096	1.175e-101	352.0	COG2189@1|root,COG2189@2|Bacteria,4NFKE@976|Bacteroidetes,2FNVJ@200643|Bacteroidia,22Y1B@171551|Porphyromonadaceae	976|Bacteroidetes	L	DNA methylase	-	-	2.1.1.72	ko:K07316	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	N6_N4_Mtase
DYD3_k127_5649316_0	1122981.AUME01000013_gene760	1.887e-208	674.0	COG1061@1|root,COG1061@2|Bacteria,4NJ7R@976|Bacteroidetes	976|Bacteroidetes	KL	Type III restriction enzyme, res subunit	-	-	3.1.21.5	ko:K01156	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	ResIII
DYD3_k127_5649316_3	1437425.CSEC_0908	1.189e-115	389.0	COG1961@1|root,COG1961@2|Bacteria,2JGRW@204428|Chlamydiae	204428|Chlamydiae	L	Resolvase, N terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Resolvase,Zn_ribbon_recom
DYD3_k127_5649316_45	497965.Cyan7822_2348	1.673e-07	55.0	COG1872@1|root,COG1872@2|Bacteria,1G935@1117|Cyanobacteria,3KIWU@43988|Cyanothece	1117|Cyanobacteria	S	Belongs to the UPF0235 family	-	-	-	ko:K09131	-	-	-	-	ko00000	-	-	-	DUF167
DYD3_k127_5649316_47	1165094.RINTHH_4010	4.266e-05	50.0	COG1544@1|root,COG1544@2|Bacteria,1G152@1117|Cyanobacteria,1HM3B@1161|Nostocales	1117|Cyanobacteria	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase	hpf	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113	-	ko:K05808	-	-	-	-	ko00000,ko03009	-	-	-	Ribosom_S30AE_C,Ribosomal_S30AE
DYD3_k127_5649316_15	648996.Theam_0215	6.733e-57	208.0	COG0223@1|root,COG0223@2|Bacteria,2G3PD@200783|Aquificae	200783|Aquificae	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	fmt	GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.1.2.9	ko:K00604	ko00670,ko00970,map00670,map00970	-	R03940	RC00026,RC00165	ko00000,ko00001,ko01000	-	-	-	Formyl_trans_C,Formyl_trans_N
DYD3_k127_5649316_31	349161.Dred_1704	1.595e-25	112.0	COG0242@1|root,COG0242@2|Bacteria,1V70B@1239|Firmicutes,24JET@186801|Clostridia,261T1@186807|Peptococcaceae	186801|Clostridia	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	def	-	3.5.1.88	ko:K01462	-	-	-	-	ko00000,ko01000	-	-	-	Pep_deformylase
DYD3_k127_5649316_34	335541.Swol_1233	2.778e-22	112.0	COG1198@1|root,COG1198@2|Bacteria,1TNYB@1239|Firmicutes,248EI@186801|Clostridia,42JHU@68298|Syntrophomonadaceae	186801|Clostridia	L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA	priA	-	-	ko:K04066	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C,ResIII
DYD3_k127_5649316_1	1171373.PACID_16910	1.681e-148	482.0	COG0766@1|root,COG0766@2|Bacteria,2GJPW@201174|Actinobacteria,4DP2I@85009|Propionibacteriales	201174|Actinobacteria	M	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	murA	-	2.5.1.7	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R00660	RC00350	ko00000,ko00001,ko01000,ko01011	-	-	-	EPSP_synthase,HTH_3
DYD3_k127_5649316_4	626939.HMPREF9443_00952	3.665e-114	377.0	COG1077@1|root,COG1077@2|Bacteria,1TP51@1239|Firmicutes,4H1XS@909932|Negativicutes	909932|Negativicutes	D	Cell shape determining protein, MreB Mrl family	mreB	-	-	ko:K03569	-	-	-	-	ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1	-	-	MreB_Mbl
DYD3_k127_5649316_2	1379858.N508_00864	9.487e-146	500.0	COG0841@1|root,COG0841@2|Bacteria,2GESU@200930|Deferribacteres	200930|Deferribacteres	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_5649316_48	743525.TSC_c02600	0.0003443	53.0	COG0845@1|root,COG0845@2|Bacteria,1WJ9T@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K02005	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_D23,OEP
DYD3_k127_5650060_0	909663.KI867150_gene375	1.853e-61	222.0	COG1349@1|root,COG1349@2|Bacteria	2|Bacteria	K	DNA-binding transcription factor activity	-	-	3.6.4.12	ko:K02444,ko:K03655	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03000,ko03400	-	-	-	AlbA_2,DUF1670,DeoRC,HATPase_c_4,HTH_DeoR
DYD3_k127_5650060_1	313628.LNTAR_16688	5.836e-28	123.0	COG1349@1|root,COG1349@2|Bacteria	2|Bacteria	K	DNA-binding transcription factor activity	-	-	3.6.4.12	ko:K02444,ko:K03655	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03000,ko03400	-	-	-	AlbA_2,DUF1670,DeoRC,HATPase_c_4,HTH_DeoR
DYD3_k127_5650471_11	1457250.BBMO01000002_gene2286	8.697e-06	50.0	COG0438@1|root,arCOG01406@2157|Archaea	2157|Archaea	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_5650471_0	941449.dsx2_3344	3.756e-102	355.0	COG0225@1|root,COG0229@1|root,COG0225@2|Bacteria,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,42N4Z@68525|delta/epsilon subdivisions,2WIKW@28221|Deltaproteobacteria,2M7UU@213115|Desulfovibrionales	28221|Deltaproteobacteria	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	msrA	-	1.8.4.11,1.8.4.12	ko:K07305,ko:K12267	-	-	-	-	ko00000,ko01000	-	-	-	PMSR,SelR
DYD3_k127_5650471_6	1043205.AFYF01000065_gene2190	5.21e-23	104.0	COG0526@1|root,COG0526@2|Bacteria,2GRCM@201174|Actinobacteria	201174|Actinobacteria	CO	Thioredoxin	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin
DYD3_k127_5650471_9	889378.Spiaf_2182	3.197e-13	72.0	COG1476@1|root,COG1476@2|Bacteria	2|Bacteria	K	sequence-specific DNA binding	-	-	-	ko:K07729	-	-	-	-	ko00000,ko03000	-	-	-	HTH_26,HTH_3
DYD3_k127_5650471_8	306263.Cla_1413	3.039e-13	74.0	COG0792@1|root,COG0792@2|Bacteria,1Q27V@1224|Proteobacteria,42V4E@68525|delta/epsilon subdivisions,2YQJM@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	L	Belongs to the UPF0102 family	-	-	-	ko:K07460	-	-	-	-	ko00000	-	-	-	UPF0102
DYD3_k127_5650471_1	526224.Bmur_1023	4.761e-96	332.0	COG0617@1|root,COG0617@2|Bacteria,2J5ZC@203691|Spirochaetes	203691|Spirochaetes	H	PolyA polymerase	papS	-	2.7.7.72	ko:K00974	ko03013,map03013	-	R09382,R09383,R09384,R09386	RC00078	ko00000,ko00001,ko01000,ko03016	-	-	-	HD,PolyA_pol,PolyA_pol_RNAbd,tRNA_NucTran2_2
DYD3_k127_5650471_2	363253.LI0839	8.38e-88	296.0	COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,42NY7@68525|delta/epsilon subdivisions,2WIXK@28221|Deltaproteobacteria,2M8AU@213115|Desulfovibrionales	28221|Deltaproteobacteria	L	PFAM Endonuclease Exonuclease phosphatase	exoA	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
DYD3_k127_5650471_4	292459.STH1821	3.598e-53	199.0	COG4974@1|root,COG4974@2|Bacteria,1TQRG@1239|Firmicutes,247QQ@186801|Clostridia	186801|Clostridia	L	Belongs to the 'phage' integrase family	xerD	-	-	ko:K04763	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD3_k127_5650471_5	457412.RSAG_03039	4.433e-24	103.0	COG0184@1|root,COG0184@2|Bacteria,1VA5C@1239|Firmicutes,24MRM@186801|Clostridia,3WK6U@541000|Ruminococcaceae	186801|Clostridia	J	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	rpsO	-	-	ko:K02956	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S15
DYD3_k127_5650471_3	1047013.AQSP01000107_gene2079	1.926e-54	196.0	COG1432@1|root,COG1432@2|Bacteria,2NRX6@2323|unclassified Bacteria	2|Bacteria	S	NYN domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN
DYD3_k127_5650471_10	1134413.ANNK01000076_gene3418	1.403e-07	58.0	COG1734@1|root,COG1734@2|Bacteria,1V6MF@1239|Firmicutes,4HEPK@91061|Bacilli,1ZEEI@1386|Bacillus	91061|Bacilli	T	COG1734 DnaK suppressor protein	yteA	-	-	-	-	-	-	-	-	-	-	-	zf-dskA_traR
DYD3_k127_5669157_9	1408813.AYMG01000036_gene3303	1.166e-47	186.0	COG0726@1|root,COG1215@1|root,COG3858@1|root,COG0726@2|Bacteria,COG1215@2|Bacteria,COG3858@2|Bacteria,4NH18@976|Bacteroidetes,1IQRP@117747|Sphingobacteriia	976|Bacteroidetes	M	glycosyl transferase family 2	-	-	3.5.1.104	ko:K22278	-	-	-	-	ko00000,ko01000	-	-	-	Glyco_hydro_18,Glyco_tranf_2_3,Glycos_transf_2,Polysacc_deac_1
DYD3_k127_5669157_6	497321.C664_11072	4.369e-71	251.0	COG0016@1|root,COG0016@2|Bacteria,1MVD7@1224|Proteobacteria,2VIM9@28216|Betaproteobacteria,2KUG4@206389|Rhodocyclales	206389|Rhodocyclales	J	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily	pheS	-	6.1.1.20	ko:K01889	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Phe_tRNA-synt_N,tRNA-synt_2d
DYD3_k127_5669157_13	666686.B1NLA3E_17035	3.865e-23	113.0	COG0072@1|root,COG0072@2|Bacteria,1TP98@1239|Firmicutes,4HAQ9@91061|Bacilli,1ZB8G@1386|Bacillus	91061|Bacilli	J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	pheT	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	B3_4,B5,FDX-ACB,tRNA_bind
DYD3_k127_5669157_5	1150469.RSPPHO_01663	3.425e-105	351.0	COG0438@1|root,COG0438@2|Bacteria,1MUB7@1224|Proteobacteria,2TQQ0@28211|Alphaproteobacteria,2JPMU@204441|Rhodospirillales	204441|Rhodospirillales	M	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4
DYD3_k127_5669157_1	1111479.AXAR01000002_gene2032	4.13e-203	653.0	COG0187@1|root,COG0187@2|Bacteria,1TQ0R@1239|Firmicutes,4H9Y6@91061|Bacilli,2790Z@186823|Alicyclobacillaceae	91061|Bacilli	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrB	GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360	5.99.1.3	ko:K02470	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
DYD3_k127_5669157_16	536232.CLM_2344	5.398e-06	56.0	COG3764@1|root,COG3764@2|Bacteria,1V1RS@1239|Firmicutes	1239|Firmicutes	M	COG3764 Sortase (surface protein transpeptidase)	-	-	3.4.22.70	ko:K07284	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Sortase
DYD3_k127_5669157_11	234267.Acid_4088	1.046e-36	160.0	COG2885@1|root,COG2885@2|Bacteria	2|Bacteria	M	chlorophyll binding	-	-	-	-	-	-	-	-	-	-	-	-	OmpA
DYD3_k127_5669157_2	1382306.JNIM01000001_gene2902	1.849e-165	539.0	COG0441@1|root,COG0441@2|Bacteria,2G5PZ@200795|Chloroflexi	200795|Chloroflexi	J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)	thrS	-	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b,tRNA_SAD
DYD3_k127_5669157_0	525904.Tter_1074	4.849e-263	845.0	COG0587@1|root,COG0587@2|Bacteria,2NNVY@2323|unclassified Bacteria	2|Bacteria	L	DNA polymerase	dnaE	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944	2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
DYD3_k127_5669157_10	345219.Bcoa_0074	1.599e-43	167.0	COG0164@1|root,COG0164@2|Bacteria,1V1D6@1239|Firmicutes,4HB7M@91061|Bacilli,1ZB7H@1386|Bacillus	91061|Bacilli	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhB	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576	3.1.26.4	ko:K03470	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	RNase_HII
DYD3_k127_5669157_14	190650.CC_1721	2e-09	63.0	COG0333@1|root,COG0333@2|Bacteria,1PU3Y@1224|Proteobacteria,2UF54@28211|Alphaproteobacteria,2KHBQ@204458|Caulobacterales	204458|Caulobacterales	J	Belongs to the bacterial ribosomal protein bL32 family	rpmF	-	-	ko:K02911	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_L32p
DYD3_k127_5669157_12	1382356.JQMP01000003_gene1311	5.906e-25	117.0	COG0781@1|root,COG0781@2|Bacteria,2G6XA@200795|Chloroflexi,27YFI@189775|Thermomicrobia	189775|Thermomicrobia	K	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons	nusB	-	-	ko:K03625	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	NusB
DYD3_k127_5669157_15	1118054.CAGW01000017_gene4422	3.555e-07	62.0	COG0274@1|root,COG1051@1|root,COG0274@2|Bacteria,COG1051@2|Bacteria,1TPAJ@1239|Firmicutes,4HAAJ@91061|Bacilli,26QH3@186822|Paenibacillaceae	91061|Bacilli	F	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate	deoC	GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576	4.1.2.4	ko:K01619	ko00030,map00030	-	R01066	RC00436,RC00437	ko00000,ko00001,ko01000	-	-	iSB619.SA_RS00835,iYO844.BSU39420	DeoC
DYD3_k127_5669157_8	1297581.H919_02482	4.296e-53	195.0	COG0571@1|root,COG0571@2|Bacteria,1TPGC@1239|Firmicutes,4HAWU@91061|Bacilli,21VEZ@150247|Anoxybacillus	91061|Bacilli	J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	rnc	GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363	3.1.26.3	ko:K03685	ko03008,ko05205,map03008,map05205	-	-	-	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	-	-	-	Ribonucleas_3_3,dsrm
DYD3_k127_5669157_7	889378.Spiaf_1207	2.06e-69	262.0	COG1196@1|root,COG1196@2|Bacteria,2J57J@203691|Spirochaetes	203691|Spirochaetes	D	Required for chromosome condensation and partitioning	smc	-	-	ko:K03529	-	-	-	-	ko00000,ko03036	-	-	-	SMC_N
DYD3_k127_5669157_4	1033743.CAES01000099_gene2616	2.318e-111	372.0	COG0334@1|root,COG0334@2|Bacteria,1TP45@1239|Firmicutes,4HAEI@91061|Bacilli,26RN2@186822|Paenibacillaceae	91061|Bacilli	E	Belongs to the Glu Leu Phe Val dehydrogenases family	-	-	1.4.1.2	ko:K00260	ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100	-	R00243	RC00006,RC02799	ko00000,ko00001,ko01000	-	-	-	ELFV_dehydrog,ELFV_dehydrog_N
DYD3_k127_5669157_3	1121481.AUAS01000014_gene2323	1.217e-163	533.0	COG0557@1|root,COG0557@2|Bacteria,4NE7T@976|Bacteroidetes,47JK7@768503|Cytophagia	976|Bacteroidetes	J	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	rnr	-	-	ko:K12573,ko:K12585	ko03018,map03018	M00391	-	-	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	-	-	-	OB_RNB,RNB,S1
DYD3_k127_568788_1	1174528.JH992893_gene6005	1.47e-37	147.0	COG3335@1|root,COG3335@2|Bacteria,1G5I5@1117|Cyanobacteria	1117|Cyanobacteria	L	K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_ISAZ013
DYD3_k127_568788_0	485913.Krac_7935	1.861e-90	304.0	COG3335@1|root,COG3335@2|Bacteria,2G8X3@200795|Chloroflexi	200795|Chloroflexi	L	PFAM Rhodopirellula transposase family protein	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_ISAZ013
DYD3_k127_568788_2	158500.BV97_05731	3.552e-21	96.0	COG1961@1|root,COG1961@2|Bacteria,1MVIE@1224|Proteobacteria,2TVFI@28211|Alphaproteobacteria,2K3E1@204457|Sphingomonadales	204457|Sphingomonadales	L	Protein involved in recombinase activity and DNA recombination	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5759756_3	1485545.JQLW01000005_gene1083	4.098e-29	121.0	2EM28@1|root,33ERQ@2|Bacteria,1NG9W@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5759756_0	378806.STAUR_6968	2.908e-111	361.0	COG0262@1|root,COG0262@2|Bacteria,1NE59@1224|Proteobacteria	1224|Proteobacteria	H	RibD C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	RibD_C
DYD3_k127_5759756_1	1499967.BAYZ01000117_gene3326	1.756e-84	284.0	COG4832@1|root,COG4832@2|Bacteria	2|Bacteria	S	GyrI-like small molecule binding domain	-	-	-	-	-	-	-	-	-	-	-	-	GyrI-like
DYD3_k127_5759756_2	1038859.AXAU01000005_gene4999	2.856e-32	127.0	COG0262@1|root,COG0262@2|Bacteria,1MY3I@1224|Proteobacteria,2U3DT@28211|Alphaproteobacteria,3K2YH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	RibD C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	RibD_C
DYD3_k127_5771075_0	84531.JMTZ01000045_gene1015	5.763e-132	443.0	COG1305@1|root,COG1305@2|Bacteria,1R5BE@1224|Proteobacteria,1SYRA@1236|Gammaproteobacteria,1XCSR@135614|Xanthomonadales	135614|Xanthomonadales	E	Domain of Unknown Function with PDB structure (DUF3857)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3857,Transglut_core
DYD3_k127_5775670_1	926550.CLDAP_02810	1.644e-185	601.0	COG0465@1|root,COG0465@2|Bacteria,2G5J3@200795|Chloroflexi	200795|Chloroflexi	O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	ftsH	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,FtsH_ext,Peptidase_M41
DYD3_k127_5775670_30	550540.Fbal_2909	4.318e-24	109.0	COG0691@1|root,COG0691@2|Bacteria,1RDFP@1224|Proteobacteria,1S3PT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	J	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene	smpB	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070930,GO:0071704,GO:0097159,GO:1901363,GO:1901564	-	ko:K03664	-	-	-	-	ko00000	-	-	-	SmpB
DYD3_k127_5775670_11	264462.Bd1262	1.141e-49	185.0	COG1478@1|root,COG1478@2|Bacteria,1PQHN@1224|Proteobacteria,4324K@68525|delta/epsilon subdivisions,2WY50@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	F420-0:Gamma-glutamyl ligase	-	-	6.3.2.12,6.3.2.17,6.3.2.31,6.3.2.34	ko:K12234,ko:K22099	ko00680,ko00790,ko01120,map00680,map00790,map01120	M00378,M00840	R00942,R02237,R04241,R09399,R09400	RC00064,RC00090,RC00141,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	F420_ligase
DYD3_k127_5775670_24	1123227.KB899336_gene420	1.287e-30	127.0	COG0290@1|root,COG0290@2|Bacteria,1RDD2@1224|Proteobacteria,2U58Z@28211|Alphaproteobacteria,2JRWF@204441|Rhodospirillales	204441|Rhodospirillales	J	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins	infC	-	-	ko:K02520	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	IF3_C,IF3_N
DYD3_k127_5775670_40	5850.PKH_070500	0.0003521	45.0	2D5DK@1|root,2SY67@2759|Eukaryota,3YCIT@5794|Apicomplexa,3KBFH@422676|Aconoidasida,3Z095@5819|Haemosporida	422676|Aconoidasida	G	Belongs to the bacterial ribosomal protein bL35 family	-	-	-	-	-	-	-	-	-	-	-	-	Ribosomal_L35p
DYD3_k127_5775670_26	59374.Fisuc_0792	8.384e-28	115.0	COG0292@1|root,COG0292@2|Bacteria	2|Bacteria	J	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	rplT	GO:0000027,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006355,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2000113,GO:2001141	-	ko:K02887	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L20
DYD3_k127_5775670_3	235985.BBPN01000009_gene3769	2.261e-100	343.0	COG1236@1|root,COG1236@2|Bacteria,2HEXB@201174|Actinobacteria,2NK0D@228398|Streptacidiphilus	201174|Actinobacteria	J	Zn-dependent metallo-hydrolase RNA specificity domain	-	-	-	ko:K07576	-	-	-	-	ko00000	-	-	-	Beta-Casp,Lactamase_B,Lactamase_B_2,RMMBL
DYD3_k127_5775670_38	445335.CBN_2762	4.351e-09	63.0	COG2865@1|root,COG2865@2|Bacteria,1TQXE@1239|Firmicutes,249ND@186801|Clostridia,36K0F@31979|Clostridiaceae	186801|Clostridia	K	Psort location CytoplasmicMembrane, score	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5775670_10	397948.Cmaq_0429	1.061e-51	190.0	COG0105@1|root,arCOG04313@2157|Archaea,2XQEV@28889|Crenarchaeota	28889|Crenarchaeota	F	Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate	ndk	GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360	2.7.4.6	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	M00049,M00050,M00052,M00053	R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895	RC00002	ko00000,ko00001,ko00002,ko01000,ko04131	-	-	-	NDK
DYD3_k127_5775670_6	644966.Tmar_2274	7.677e-68	239.0	COG0024@1|root,COG0024@2|Bacteria,1TQC1@1239|Firmicutes,248I8@186801|Clostridia,3WCH7@538999|Clostridiales incertae sedis	186801|Clostridia	E	Metallopeptidase family M24	map	-	3.4.11.18	ko:K01265	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M24
DYD3_k127_5775670_29	883069.HMPREF9238_00762	5.451e-25	111.0	COG0563@1|root,COG0563@2|Bacteria,2GJ7T@201174|Actinobacteria,4D4SK@85005|Actinomycetales	201174|Actinobacteria	F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism	adk	-	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ADK,ADK_lid
DYD3_k127_5775670_4	309801.trd_0965	8.12e-94	323.0	COG0201@1|root,COG0201@2|Bacteria,2G5X4@200795|Chloroflexi,27XI1@189775|Thermomicrobia	189775|Thermomicrobia	U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently	secY	-	-	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5	-	-	SecY
DYD3_k127_5775670_32	479437.Elen_2159	2.448e-17	89.0	COG0200@1|root,COG0200@2|Bacteria,2II6M@201174|Actinobacteria,4CVMS@84998|Coriobacteriia	84998|Coriobacteriia	J	binds to the 23S rRNA	rplO	-	-	ko:K02876	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L27A
DYD3_k127_5775670_25	289397.MBOVPG45_0279	5.052e-30	126.0	COG0098@1|root,COG0098@2|Bacteria,3WTIC@544448|Tenericutes	544448|Tenericutes	J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body	rpsE	-	-	ko:K02988	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S5,Ribosomal_S5_C
DYD3_k127_5775670_22	883112.HMPREF9707_00203	4.058e-33	131.0	COG0256@1|root,COG0256@2|Bacteria,1V6DM@1239|Firmicutes,4HIGF@91061|Bacilli,27E0Z@186827|Aerococcaceae	91061|Bacilli	J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance	rplR	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904	-	ko:K02881	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L18p
DYD3_k127_5775670_16	349521.HCH_06201	1.224e-42	162.0	COG0097@1|root,COG0097@2|Bacteria,1R9YZ@1224|Proteobacteria,1S1Z1@1236|Gammaproteobacteria,1XJA3@135619|Oceanospirillales	135619|Oceanospirillales	J	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center	rplF	-	-	ko:K02933	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L6
DYD3_k127_5775670_31	161156.JQKW01000006_gene1047	6.182e-24	105.0	COG0096@1|root,COG0096@2|Bacteria,2GHUB@200940|Thermodesulfobacteria	200940|Thermodesulfobacteria	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	rpsH	-	-	ko:K02994	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S8
DYD3_k127_5775670_23	1515615.HQ41_04660	2.324e-32	128.0	COG0199@1|root,COG0199@2|Bacteria,4NQ6N@976|Bacteroidetes,2FTD0@200643|Bacteroidia,22Y99@171551|Porphyromonadaceae	976|Bacteroidetes	J	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	rpsN	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02954	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S14
DYD3_k127_5775670_15	862517.HMPREF9225_0164	9.308e-43	163.0	COG0094@1|root,COG0094@2|Bacteria,1TPE0@1239|Firmicutes,247X0@186801|Clostridia,22G54@1570339|Peptoniphilaceae	186801|Clostridia	J	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits	rplE	-	-	ko:K02931	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L5,Ribosomal_L5_C
DYD3_k127_5775670_28	1380394.JADL01000007_gene4708	8.728e-26	112.0	COG0198@1|root,COG0198@2|Bacteria,1MZQD@1224|Proteobacteria,2UC6Y@28211|Alphaproteobacteria,2JT9D@204441|Rhodospirillales	204441|Rhodospirillales	J	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	rplX	-	-	ko:K02895	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	KOW,ribosomal_L24
DYD3_k127_5775670_19	445975.COLSTE_00633	2.712e-38	146.0	COG0093@1|root,COG0093@2|Bacteria,2IHNX@201174|Actinobacteria,4CVUJ@84998|Coriobacteriia	84998|Coriobacteriia	J	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome	rplN	-	-	ko:K02874	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L14
DYD3_k127_5775670_34	717772.THIAE_00800	1.003e-15	80.0	COG0186@1|root,COG0186@2|Bacteria,1MZIK@1224|Proteobacteria,1S8SS@1236|Gammaproteobacteria,4613R@72273|Thiotrichales	72273|Thiotrichales	J	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA	rpsQ	-	-	ko:K02961	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S17
DYD3_k127_5775670_18	1144342.PMI40_01260	4.244e-39	149.0	COG0197@1|root,COG0197@2|Bacteria,1RA0Z@1224|Proteobacteria,2VQ0A@28216|Betaproteobacteria,4745T@75682|Oxalobacteraceae	28216|Betaproteobacteria	J	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs	rplP	-	-	ko:K02878	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L16
DYD3_k127_5775670_8	1121946.AUAX01000005_gene5255	1.869e-54	199.0	COG0092@1|root,COG0092@2|Bacteria,2GKF1@201174|Actinobacteria,4D91J@85008|Micromonosporales	201174|Actinobacteria	J	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation	rpsC	GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02982	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	KH_2,Ribosomal_S3_C
DYD3_k127_5775670_33	1278073.MYSTI_04633	1.033e-16	83.0	COG0091@1|root,COG0091@2|Bacteria,1RH0W@1224|Proteobacteria,42TRE@68525|delta/epsilon subdivisions,2WQBH@28221|Deltaproteobacteria,2Z0I6@29|Myxococcales	28221|Deltaproteobacteria	J	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	rplV	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02890	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L22
DYD3_k127_5775670_27	1349822.NSB1T_12260	2.484e-26	111.0	COG0185@1|root,COG0185@2|Bacteria,4NQ8T@976|Bacteroidetes,2FT46@200643|Bacteroidia,22Y5Y@171551|Porphyromonadaceae	976|Bacteroidetes	J	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA	rpsS	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904	-	ko:K02965	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S19
DYD3_k127_5775670_36	1262915.BN574_00850	7.001e-12	75.0	COG5513@1|root,COG5513@2|Bacteria,1V4PH@1239|Firmicutes,4H8ZM@909932|Negativicutes	909932|Negativicutes	S	Domain of unknown function (DUF4163)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3298,DUF4163
DYD3_k127_5775670_5	608506.COB47_0842	1.499e-88	300.0	COG0090@1|root,COG0090@2|Bacteria,1TP9X@1239|Firmicutes,247XY@186801|Clostridia,42EWJ@68295|Thermoanaerobacterales	186801|Clostridia	J	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity	rplB	-	-	ko:K02886	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L2,Ribosomal_L2_C
DYD3_k127_5775670_37	1336245.JAGO01000014_gene1226	3.347e-09	62.0	COG0089@1|root,COG0089@2|Bacteria,1MZXX@1224|Proteobacteria,1S8VX@1236|Gammaproteobacteria,1XKG5@135619|Oceanospirillales	135619|Oceanospirillales	J	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome	rplW	-	-	ko:K02892	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L23
DYD3_k127_5775670_20	635013.TherJR_0297	6.176e-36	146.0	COG0088@1|root,COG0088@2|Bacteria,1TPGW@1239|Firmicutes,248SY@186801|Clostridia,26186@186807|Peptococcaceae	186801|Clostridia	J	Forms part of the polypeptide exit tunnel	rplD	-	-	ko:K02926	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L4
DYD3_k127_5775670_12	316274.Haur_4915	3.13e-49	183.0	COG0087@1|root,COG0087@2|Bacteria,2G6DQ@200795|Chloroflexi,375C3@32061|Chloroflexia	32061|Chloroflexia	J	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rplC	-	-	ko:K02906	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L3
DYD3_k127_5775670_21	1382306.JNIM01000001_gene3550	1.971e-33	132.0	COG0051@1|root,COG0051@2|Bacteria,2G6RB@200795|Chloroflexi	200795|Chloroflexi	J	Involved in the binding of tRNA to the ribosomes	rpsJ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02946	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S10
DYD3_k127_5775670_2	1379281.AVAG01000108_gene241	4.571e-172	553.0	COG0050@1|root,COG0050@2|Bacteria,1MVC0@1224|Proteobacteria,42MWZ@68525|delta/epsilon subdivisions,2WJ2B@28221|Deltaproteobacteria,2M88A@213115|Desulfovibrionales	28221|Deltaproteobacteria	J	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	tuf	-	-	ko:K02358	-	-	-	-	ko00000,ko03012,ko03029,ko04147	-	-	-	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
DYD3_k127_5775670_0	1347086.CCBA010000014_gene706	1.954e-271	852.0	COG0480@1|root,COG0480@2|Bacteria,1TPF9@1239|Firmicutes,4HAB8@91061|Bacilli,1ZBS4@1386|Bacillus	91061|Bacilli	J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome	fusA	-	-	ko:K02355	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2
DYD3_k127_5775670_14	1191523.MROS_0220	1.462e-47	175.0	COG0049@1|root,COG0049@2|Bacteria	2|Bacteria	J	rRNA binding	rpsG	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016020,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113	-	ko:K02992	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S7
DYD3_k127_5775670_9	1129368.SMIPMB4A_v3c3690	8.72e-54	193.0	COG0048@1|root,COG0048@2|Bacteria,3WTGE@544448|Tenericutes	544448|Tenericutes	J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit	rpsL	-	-	ko:K02950	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosom_S12_S23
DYD3_k127_5775670_7	1122176.KB903544_gene780	2.181e-67	244.0	COG0477@1|root,COG2814@2|Bacteria,4NFM7@976|Bacteroidetes,1INXG@117747|Sphingobacteriia	976|Bacteroidetes	EGP	major facilitator superfamily	tetA	-	-	ko:K08151	-	M00668	-	-	ko00000,ko00002,ko01504,ko02000	2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75	-	-	MFS_1,Sugar_tr
DYD3_k127_5775670_17	289376.THEYE_A1736	2.823e-42	162.0	COG1994@1|root,COG1994@2|Bacteria,3J14Q@40117|Nitrospirae	40117|Nitrospirae	S	Peptidase family M50	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M50
DYD3_k127_5775670_39	1396141.BATP01000045_gene1778	6.279e-09	61.0	COG0227@1|root,COG0227@2|Bacteria,46TBF@74201|Verrucomicrobia,2IUUU@203494|Verrucomicrobiae	203494|Verrucomicrobiae	J	Ribosomal L28 family	rpmB	-	-	ko:K02902	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L28
DYD3_k127_5775670_13	632335.Calkr_2081	1.41e-47	181.0	COG2333@1|root,COG2333@2|Bacteria,1TS9U@1239|Firmicutes,249VR@186801|Clostridia,42EVU@68295|Thermoanaerobacterales	186801|Clostridia	S	beta-lactamase domain protein	-	-	-	ko:K02238	-	M00429	-	-	ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2	-	-	Ada_Zn_binding,LTD,Lactamase_B
DYD3_k127_5844490_1	1121296.JONJ01000001_gene1718	1.212e-110	374.0	COG0532@1|root,COG0532@2|Bacteria,1TPAI@1239|Firmicutes,248SJ@186801|Clostridia,21XIJ@1506553|Lachnoclostridium	186801|Clostridia	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	infB	-	-	ko:K02519	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	GTP_EFTU,IF-2,IF2_N
DYD3_k127_5844490_2	1173027.Mic7113_3518	3.702e-54	203.0	COG0115@1|root,COG0115@2|Bacteria,1G8CI@1117|Cyanobacteria	1117|Cyanobacteria	H	PFAM aminotransferase, class IV	-	-	2.6.1.42	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R10991	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_4
DYD3_k127_5844490_5	1304866.K413DRAFT_2305	1.644e-06	60.0	COG1653@1|root,COG1653@2|Bacteria,1U4H4@1239|Firmicutes,24A14@186801|Clostridia	186801|Clostridia	G	ABC-type sugar transport system periplasmic component	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1,SBP_bac_8
DYD3_k127_5844490_3	1196322.A370_02201	2.862e-20	97.0	COG0500@1|root,COG2226@2|Bacteria,1VAEA@1239|Firmicutes,24G83@186801|Clostridia,36I0B@31979|Clostridiaceae	186801|Clostridia	Q	PFAM ubiE COQ5 methyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_31,Ubie_methyltran
DYD3_k127_5844490_0	1347392.CCEZ01000010_gene2379	2.923e-258	820.0	COG0188@1|root,COG0188@2|Bacteria,1TP2Z@1239|Firmicutes,2482G@186801|Clostridia,36E5Z@31979|Clostridiaceae	186801|Clostridia	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrA	-	5.99.1.3	ko:K02469	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
DYD3_k127_5844490_4	926550.CLDAP_39310	3.351e-09	60.0	COG2220@1|root,COG2220@2|Bacteria,2G6IQ@200795|Chloroflexi	200795|Chloroflexi	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_3
DYD3_k127_5869839_0	323261.Noc_1881	5.175e-104	353.0	COG2204@1|root,COG2204@2|Bacteria,1NH9G@1224|Proteobacteria,1RRF2@1236|Gammaproteobacteria,1X04Q@135613|Chromatiales	135613|Chromatiales	K	Sigma-54 interaction domain	-	-	-	-	-	-	-	-	-	-	-	-	Sigma54_activat
DYD3_k127_5869839_1	1123502.AQXD01000005_gene1667	1.759e-14	73.0	2B67D@1|root,31Z4K@2|Bacteria,1QD9U@1224|Proteobacteria,1T979@1236|Gammaproteobacteria,1XBSG@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5906610_1	590409.Dd586_1387	1.435e-09	59.0	COG0346@1|root,COG0346@2|Bacteria,1N2SB@1224|Proteobacteria,1SA4P@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_5906610_0	314278.NB231_11809	9.164e-38	147.0	COG1943@1|root,COG1943@2|Bacteria,1RBFM@1224|Proteobacteria	1224|Proteobacteria	L	Transposase	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_5913545_10	91604.ID47_02625	2.388e-31	129.0	COG0545@1|root,COG0545@2|Bacteria,1RDA1@1224|Proteobacteria,2VF0E@28211|Alphaproteobacteria,47G7U@766|Rickettsiales	766|Rickettsiales	O	FKBP-type peptidyl-prolyl cis-trans isomerase	-	-	5.2.1.8	ko:K03772	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	FKBP_C
DYD3_k127_5913545_1	1047013.AQSP01000118_gene1252	2.515e-82	306.0	COG0433@1|root,COG0433@2|Bacteria	2|Bacteria	S	helicase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5913545_12	316067.Geob_1058	4.653e-27	113.0	COG1950@1|root,COG1950@2|Bacteria,1N1DF@1224|Proteobacteria	1224|Proteobacteria	S	PFAM Membrane protein of	-	-	-	ko:K08972	-	-	-	-	ko00000	-	-	-	Phage_holin_4_2
DYD3_k127_5913545_7	287986.DV20_37480	3.481e-43	171.0	COG5438@1|root,COG5438@2|Bacteria,2GKJ4@201174|Actinobacteria,4DY5S@85010|Pseudonocardiales	201174|Actinobacteria	S	PFAM YibE F-like protein	-	-	-	-	-	-	-	-	-	-	-	-	YibE_F
DYD3_k127_5913545_3	1122604.JONR01000023_gene4137	1.531e-77	266.0	COG0428@1|root,COG0428@2|Bacteria	2|Bacteria	P	transporter	-	-	-	ko:K07238,ko:K11021	-	-	-	-	ko00000,ko02000,ko02042	2.A.5.5	-	-	Zip
DYD3_k127_5913545_14	1089553.Tph_c22430	3.337e-18	89.0	COG0735@1|root,COG0735@2|Bacteria,1V6RI@1239|Firmicutes,24PHW@186801|Clostridia,42H74@68295|Thermoanaerobacterales	186801|Clostridia	P	Ferric uptake regulator family	-	-	-	ko:K02076,ko:K03711	-	-	-	-	ko00000,ko03000	-	-	-	FUR
DYD3_k127_5913545_4	487796.Flav2ADRAFT_0225	9.281e-71	247.0	COG1741@1|root,COG1741@2|Bacteria,4NGJ5@976|Bacteroidetes,1HYY2@117743|Flavobacteriia	976|Bacteroidetes	T	Belongs to the pirin family	yhhW	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin
DYD3_k127_5913545_0	456442.Mboo_1629	2.476e-117	385.0	COG2899@1|root,arCOG05299@2157|Archaea,2Y4HF@28890|Euryarchaeota	28890|Euryarchaeota	S	Protein of unknown function (DUF475)	-	-	-	ko:K09799	-	-	-	-	ko00000	-	-	-	DUF475
DYD3_k127_5913545_15	1123405.AUMM01000027_gene2131	2.65e-06	59.0	COG3409@1|root,COG3584@1|root,COG3409@2|Bacteria,COG3584@2|Bacteria,1UV4J@1239|Firmicutes,4HGRR@91061|Bacilli,26Q6J@186821|Sporolactobacillaceae	91061|Bacilli	M	3D domain	-	-	-	-	-	-	-	-	-	-	-	-	3D,PG_binding_1,Peptidase_M23
DYD3_k127_5913545_8	1032480.MLP_52170	2.288e-42	164.0	COG2220@1|root,COG2220@2|Bacteria,2GNHK@201174|Actinobacteria,4DV40@85009|Propionibacteriales	201174|Actinobacteria	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_3
DYD3_k127_5913545_11	349965.yinte0001_24780	6.502e-31	126.0	COG2510@1|root,COG2510@2|Bacteria,1RJ4E@1224|Proteobacteria,1S4B8@1236|Gammaproteobacteria,41FYT@629|Yersinia	1236|Gammaproteobacteria	S	EamA-like transporter family	-	-	-	ko:K08978	-	-	-	-	ko00000,ko02000	2.A.7.2	-	-	EamA
DYD3_k127_5913545_13	748449.Halha_0065	2.557e-18	87.0	COG2827@1|root,COG2827@2|Bacteria,1VEZF@1239|Firmicutes,24QYU@186801|Clostridia	186801|Clostridia	L	GIY-YIG catalytic domain	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
DYD3_k127_5913545_9	1463936.JOJI01000033_gene2480	1.008e-40	160.0	COG3415@1|root,COG3415@2|Bacteria,2HK0D@201174|Actinobacteria	201174|Actinobacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23,Terminase_5
DYD3_k127_5913545_6	1379698.RBG1_1C00001G0644	2.429e-59	214.0	COG2003@1|root,COG2003@2|Bacteria,2NPI9@2323|unclassified Bacteria	2|Bacteria	E	Belongs to the UPF0758 family	radC	-	-	ko:K03630	-	-	-	-	ko00000	-	-	-	RadC
DYD3_k127_5913545_5	1123405.AUMM01000075_gene128	2.188e-70	251.0	COG2812@1|root,COG2812@2|Bacteria,1TPS9@1239|Firmicutes,4HAUE@91061|Bacilli,26NHU@186821|Sporolactobacillaceae	91061|Bacilli	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	dnaX	GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576	2.7.7.7	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2,DNA_pol3_gamma3
DYD3_k127_5913545_2	65071.PYU1_T011594	7.229e-81	280.0	COG0042@1|root,KOG2335@2759|Eukaryota,1MFAE@121069|Pythiales	121069|Pythiales	J	TRNA-dihydrouridine synthase	-	-	-	-	-	-	-	-	-	-	-	-	Dus
DYD3_k127_5924209_5	1301098.PKB_4411	1.642e-45	169.0	COG0343@1|root,COG0343@2|Bacteria,1NMM1@1224|Proteobacteria,1SN4Q@1236|Gammaproteobacteria	1236|Gammaproteobacteria	J	queuine tRNA-ribosyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_5924209_2	1301098.PKB_4409	6.313e-87	291.0	COG0603@1|root,COG0603@2|Bacteria,1QQRH@1224|Proteobacteria,1SKM8@1236|Gammaproteobacteria	1236|Gammaproteobacteria	F	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	-	-	6.3.4.20	ko:K06920	ko00790,ko01100,map00790,map01100	-	R09978	RC00959	ko00000,ko00001,ko01000,ko03016	-	-	-	QueC
DYD3_k127_5924209_3	316067.Geob_2718	3.417e-70	240.0	arCOG06889@1|root,31151@2|Bacteria,1NBZJ@1224|Proteobacteria,431P0@68525|delta/epsilon subdivisions,2WWX8@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	MTH538 TIR-like domain (DUF1863)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1863
DYD3_k127_5924209_4	316067.Geob_2719	2.849e-67	233.0	COG0457@1|root,COG0457@2|Bacteria	316067.Geob_2719|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5924209_1	290512.Paes_2232	1.234e-98	339.0	COG1073@1|root,COG1073@2|Bacteria,1FF06@1090|Chlorobi	1090|Chlorobi	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5924209_0	580332.Slit_2917	3.028e-106	352.0	COG3440@1|root,COG3440@2|Bacteria,1N4JP@1224|Proteobacteria,2VVU0@28216|Betaproteobacteria	28216|Betaproteobacteria	V	HNH endonuclease	-	-	-	ko:K07454	-	-	-	-	ko00000	-	-	-	HNH_2
DYD3_k127_5938834_0	1385935.N836_34460	1.727e-64	241.0	COG3039@1|root,COG3039@2|Bacteria,1G3IA@1117|Cyanobacteria,1HEFE@1150|Oscillatoriales	1117|Cyanobacteria	L	Transposase domain (DUF772)	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1_6,DUF772
DYD3_k127_5944726_0	329726.AM1_2453	9.976e-43	173.0	COG3385@1|root,COG3385@2|Bacteria,1G0M7@1117|Cyanobacteria	1117|Cyanobacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5
DYD3_k127_5968278_0	1463853.JOHW01000016_gene5476	8.203e-49	178.0	COG4405@1|root,COG4405@2|Bacteria,2IFEU@201174|Actinobacteria	201174|Actinobacteria	S	F420H(2)-dependent quinone reductase	-	-	-	-	-	-	-	-	-	-	-	-	F420H2_quin_red
DYD3_k127_5968278_1	1206725.BAFU01000026_gene2651	1.389e-07	53.0	COG3837@1|root,COG3837@2|Bacteria	2|Bacteria	S	Cupin domain	-	-	3.4.13.22	ko:K08641,ko:K11312	ko01502,ko02020,map01502,map02020	M00651	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504	-	-	-	Cupin_2,HTH_18
DYD3_k127_5989325_37	1182590.BN5_02015	0.0008324	47.0	COG3170@1|root,COG3170@2|Bacteria,1RDH8@1224|Proteobacteria,1RRAZ@1236|Gammaproteobacteria,1YDQT@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	NU	Tfp pilus assembly protein FimV	fimV	-	-	ko:K08086	-	-	-	-	ko00000	-	-	-	LysM
DYD3_k127_5989325_29	511062.GU3_03155	1.367e-16	80.0	COG2003@1|root,COG2003@2|Bacteria,1MXZ5@1224|Proteobacteria,1RP86@1236|Gammaproteobacteria,1Y3ZB@135624|Aeromonadales	135624|Aeromonadales	E	Belongs to the UPF0758 family	radC	-	-	ko:K03630	-	-	-	-	ko00000	-	-	-	RadC
DYD3_k127_5989325_22	234831.PSM_A0685	1.137e-35	150.0	COG4974@1|root,COG4974@2|Bacteria,1N2GS@1224|Proteobacteria,1SBEN@1236|Gammaproteobacteria,2Q4VE@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	L	Phage integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD3_k127_5989325_26	234831.PSM_A0684	3.097e-19	103.0	2DEYM@1|root,2ZPST@2|Bacteria,1P48P@1224|Proteobacteria,1SVVT@1236|Gammaproteobacteria,2Q54A@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_21	234831.PSM_A0683	2.742e-40	170.0	28MJB@1|root,2ZAVW@2|Bacteria,1QDRW@1224|Proteobacteria,1S051@1236|Gammaproteobacteria,2Q3SH@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_28	1217708.F887_02622	5.068e-17	83.0	COG1426@1|root,COG1426@2|Bacteria,1NF9D@1224|Proteobacteria,1SDFN@1236|Gammaproteobacteria,3NPEW@468|Moraxellaceae	1236|Gammaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
DYD3_k127_5989325_10	1219045.BV98_001370	2.691e-73	257.0	2EYCA@1|root,33RKN@2|Bacteria,1NTYB@1224|Proteobacteria	1224|Proteobacteria	T	Histidine kinase-like ATPases	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_15	693986.MOC_1659	5.791e-47	175.0	COG0640@1|root,COG0640@2|Bacteria,1NVX7@1224|Proteobacteria	1224|Proteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_24
DYD3_k127_5989325_23	1266925.JHVX01000006_gene2198	8.724e-32	136.0	2FEME@1|root,346KS@2|Bacteria,1P0MM@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_9	1323663.AROI01000016_gene410	1.484e-74	264.0	COG3621@1|root,COG3621@2|Bacteria,1R852@1224|Proteobacteria,1S106@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	PFAM Patatin-like phospholipase	-	-	-	ko:K06900	-	-	-	-	ko00000	-	-	-	Patatin
DYD3_k127_5989325_7	697282.Mettu_2719	5.95e-86	299.0	28K9C@1|root,2Z9WZ@2|Bacteria,1MX0J@1224|Proteobacteria,1RS67@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009187,GO:0009190,GO:0009405,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0032101,GO:0032102,GO:0034641,GO:0034654,GO:0040012,GO:0040013,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044419,GO:0046483,GO:0048519,GO:0048583,GO:0048585,GO:0050789,GO:0050920,GO:0050922,GO:0051704,GO:0052621,GO:0055086,GO:0061501,GO:0065007,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_4	697282.Mettu_2718	9.211e-103	354.0	COG0476@1|root,COG0476@2|Bacteria,1R89K@1224|Proteobacteria,1RQNK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	H	ThiF family	-	-	-	-	-	-	-	-	-	-	-	-	Prok-E2_B,ThiF
DYD3_k127_5989325_24	1384054.N790_01365	7.798e-24	107.0	COG1310@1|root,COG1310@2|Bacteria,1RIVF@1224|Proteobacteria,1S626@1236|Gammaproteobacteria,1XB7B@135614|Xanthomonadales	135614|Xanthomonadales	S	Prokaryotic homologs of the JAB domain	-	-	-	-	-	-	-	-	-	-	-	-	Prok-JAB
DYD3_k127_5989325_14	1396858.Q666_15120	2.506e-65	244.0	COG4469@1|root,COG4469@2|Bacteria,1RFB6@1224|Proteobacteria,1S55Q@1236|Gammaproteobacteria,468QU@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	Competence protein	-	-	-	-	-	-	-	-	-	-	-	-	CoiA
DYD3_k127_5989325_16	1167006.UWK_02729	1.534e-46	174.0	2EJUM@1|root,33DJ9@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_32	6326.BUX.s00579.515	1.376e-10	68.0	COG1864@1|root,KOG3721@2759|Eukaryota,38E5K@33154|Opisthokonta,3BD2Y@33208|Metazoa,3CVAJ@33213|Bilateria,40CZX@6231|Nematoda,1KW20@119089|Chromadorea	33208|Metazoa	F	DNA/RNA non-specific endonuclease	ENDOG	GO:0000001,GO:0000003,GO:0000737,GO:0001701,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006308,GO:0006309,GO:0006310,GO:0006401,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006996,GO:0007005,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0012501,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0030154,GO:0030262,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032501,GO:0032502,GO:0032504,GO:0034097,GO:0034612,GO:0034641,GO:0034645,GO:0034655,GO:0035234,GO:0036477,GO:0042221,GO:0042802,GO:0042803,GO:0042981,GO:0043009,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045935,GO:0046483,GO:0046677,GO:0046700,GO:0046983,GO:0048232,GO:0048308,GO:0048311,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051640,GO:0051641,GO:0051646,GO:0051704,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097194,GO:0097458,GO:0140097,GO:0140098,GO:1900117,GO:1900119,GO:1900407,GO:1900409,GO:1901031,GO:1901033,GO:1901298,GO:1901300,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576,GO:1902510,GO:1902512,GO:1902882,GO:1902884,GO:1903201,GO:1903205,GO:1903209,GO:1903624,GO:1903626,GO:1905206,GO:2001023,GO:2001025,GO:2001038,GO:2001040	-	ko:K01173	ko04210,map04210	-	-	-	ko00000,ko00001,ko03029	-	-	-	Endonuclease_NS
DYD3_k127_5989325_27	1120951.AUBG01000012_gene1568	1.496e-18	96.0	COG2114@1|root,COG2114@2|Bacteria	2|Bacteria	T	Pfam Adenylate and Guanylate cyclase catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF4242,Guanylate_cyc,HTH_18
DYD3_k127_5989325_2	1380358.JADJ01000007_gene2980	3.31e-139	460.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,1RPG9@1236|Gammaproteobacteria,1XR6H@135619|Oceanospirillales	135619|Oceanospirillales	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
DYD3_k127_5989325_8	864073.HFRIS_016105	2.705e-78	267.0	COG0745@1|root,COG0745@2|Bacteria,1NCKY@1224|Proteobacteria,2VRVX@28216|Betaproteobacteria	28216|Betaproteobacteria	K	Two component transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_5989325_13	202955.BBND01000012_gene713	7.283e-67	237.0	COG3713@1|root,COG3713@2|Bacteria,1RB2A@1224|Proteobacteria,1S3K6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	MltA-interacting protein MipA	-	-	-	ko:K07274	-	-	-	-	ko00000,ko02000	9.B.99.1	-	-	MipA
DYD3_k127_5989325_3	28229.ND2E_0206	3.524e-137	462.0	COG1629@1|root,COG4771@2|Bacteria,1R5B9@1224|Proteobacteria,1SZT1@1236|Gammaproteobacteria,2Q7XM@267889|Colwelliaceae	1236|Gammaproteobacteria	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_5989325_5	1031711.RSPO_c01620	4.029e-88	304.0	COG0845@1|root,COG0845@2|Bacteria,1MXGH@1224|Proteobacteria,2VIDH@28216|Betaproteobacteria,1K7FJ@119060|Burkholderiaceae	28216|Betaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_5989325_0	1441629.PCH70_19010	0.0	1262.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1Z8I9@136849|Pseudomonas syringae group	1236|Gammaproteobacteria	V	Protein export membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_5989325_1	56780.SYN_02074	9.885e-282	885.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,42MF6@68525|delta/epsilon subdivisions,2WJVV@28221|Deltaproteobacteria,2MQ80@213462|Syntrophobacterales	28221|Deltaproteobacteria	V	TIGRFAM The (Largely Gram-negative Bacterial) Hydrophobe Amphiphile Efflux-1 (HAE1) Family	acrB	-	-	ko:K03296,ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_5989325_20	761193.Runsl_3690	1.712e-41	164.0	COG4221@1|root,COG4221@2|Bacteria,4NGKR@976|Bacteroidetes,47XGT@768503|Cytophagia	976|Bacteroidetes	S	Fungal family of unknown function (DUF1776)	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_5989325_6	715451.ambt_20925	1.392e-86	297.0	COG3528@1|root,COG3528@2|Bacteria,1R601@1224|Proteobacteria,1S38P@1236|Gammaproteobacteria,46CSM@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2219)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2219
DYD3_k127_5989325_18	1121937.AUHJ01000029_gene2821	1.448e-42	163.0	2EHM5@1|root,33BCX@2|Bacteria,1NECF@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_17	243265.plu2305	4.874e-44	161.0	COG3905@1|root,COG3905@2|Bacteria,1N8CE@1224|Proteobacteria,1SAXF@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	RHH_1
DYD3_k127_5989325_36	1332071.L581_2787	7.494e-05	46.0	COG3668@1|root,COG3668@2|Bacteria,1N016@1224|Proteobacteria,1SE5Y@1236|Gammaproteobacteria,403YU@613|Serratia	1236|Gammaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_5989325_25	243265.plu2306	3.108e-20	90.0	COG3668@1|root,COG3668@2|Bacteria,1N016@1224|Proteobacteria,1SE5Y@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Plasmid stabilization system	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_5989325_33	1411685.U062_02146	1.363e-08	59.0	2DGI2@1|root,2ZW2M@2|Bacteria,1P4XI@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989325_19	398580.Dshi_0050	1.637e-42	160.0	COG2856@1|root,COG2856@2|Bacteria,1N1V9@1224|Proteobacteria,2UCQ5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Pfam:DUF955	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M78
DYD3_k127_5989325_30	1120963.KB894506_gene3801	2.44e-15	81.0	2EQ48@1|root,33HQK@2|Bacteria,1NID8@1224|Proteobacteria,1SI16@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60
DYD3_k127_5989325_35	883077.HMPREF9241_01715	2.815e-05	49.0	2ASC9@1|root,31HRI@2|Bacteria,2HMAT@201174|Actinobacteria,4D6NV@85005|Actinomycetales	201174|Actinobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_5989325_12	236097.ADG881_155	2.31e-68	241.0	COG2356@1|root,COG2356@2|Bacteria,1RI3H@1224|Proteobacteria,1S6A9@1236|Gammaproteobacteria,1XPB2@135619|Oceanospirillales	135619|Oceanospirillales	L	Protein of unknown function (DUF1524)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1524
DYD3_k127_5989325_11	396588.Tgr7_0100	1.798e-69	241.0	COG2003@1|root,COG2003@2|Bacteria,1MXZ5@1224|Proteobacteria,1RP86@1236|Gammaproteobacteria,1WXFP@135613|Chromatiales	135613|Chromatiales	L	Belongs to the UPF0758 family	-	-	-	ko:K03630	-	-	-	-	ko00000	-	-	-	RadC
DYD3_k127_6067846_22	396588.Tgr7_2288	4.112e-75	266.0	COG0815@1|root,COG0815@2|Bacteria,1MUBU@1224|Proteobacteria,1RM8M@1236|Gammaproteobacteria,1WWSQ@135613|Chromatiales	135613|Chromatiales	M	Transfers the fatty acyl group on membrane lipoproteins	lnt	-	-	ko:K03820	-	-	-	-	ko00000,ko01000	-	GT2	-	CN_hydrolase
DYD3_k127_6067846_17	765912.Thimo_0667	2.55e-94	317.0	COG4535@1|root,COG4535@2|Bacteria,1QTU8@1224|Proteobacteria,1RMKX@1236|Gammaproteobacteria,1WW4G@135613|Chromatiales	135613|Chromatiales	P	PFAM CBS domain	-	-	-	ko:K06189	-	-	-	-	ko00000,ko02000	9.A.40.1.2	-	-	CBS,CorC_HlyC
DYD3_k127_6067846_30	1046724.KB889827_gene2683	3.446e-46	170.0	COG0319@1|root,COG0319@2|Bacteria,1MZ67@1224|Proteobacteria,1S6BS@1236|Gammaproteobacteria,467I5@72275|Alteromonadaceae	1236|Gammaproteobacteria	J	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA	ybeY	GO:0000469,GO:0000478,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0016151,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030490,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043244,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141	-	ko:K07042	-	-	-	-	ko00000,ko03009	-	-	-	UPF0054
DYD3_k127_6067846_10	391615.ABSJ01000027_gene242	6.668e-138	448.0	COG1702@1|root,COG1702@2|Bacteria,1MVDV@1224|Proteobacteria,1RP2Y@1236|Gammaproteobacteria,1J4JM@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	T	Phosphate starvation-inducible protein PhoH	ybeZ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	ko:K06217	-	-	-	-	ko00000	-	-	-	PhoH
DYD3_k127_6067846_2	713586.KB900536_gene1139	1.672e-221	694.0	COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,1RMD8@1236|Gammaproteobacteria,1WWN1@135613|Chromatiales	135613|Chromatiales	J	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	miaB	-	2.8.4.3	ko:K06168	-	-	R10645,R10646,R10647	RC00003,RC00980,RC03221,RC03222	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,TRAM,UPF0004
DYD3_k127_6067846_4	1123377.AUIV01000012_gene721	1.547e-188	595.0	COG1373@1|root,COG1373@2|Bacteria,1MWBT@1224|Proteobacteria,1RRXR@1236|Gammaproteobacteria,1XAEU@135614|Xanthomonadales	135614|Xanthomonadales	S	Domain of unknown function (DUF4143)	-	-	-	ko:K07133	-	-	-	-	ko00000	-	-	-	AAA_14,DUF4143
DYD3_k127_6067846_3	1485545.JQLW01000009_gene44	3.885e-194	623.0	COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria	1224|Proteobacteria	GM	Polysaccharide biosynthesis protein	pglF	-	4.2.1.135	ko:K15912	ko00520,map00520	-	-	-	ko00000,ko00001,ko01000	-	-	-	CoA_binding_3,Polysacc_synt_2
DYD3_k127_6067846_13	76869.PputGB1_1378	7.259e-129	420.0	COG0472@1|root,COG0472@2|Bacteria,1MWYW@1224|Proteobacteria,1RNAP@1236|Gammaproteobacteria,1YWZH@136845|Pseudomonas putida group	1236|Gammaproteobacteria	M	glycosyl transferase	wbpL	-	-	ko:K13007	-	-	-	-	ko00000,ko01000,ko01003,ko01005	-	-	-	Glycos_transf_4
DYD3_k127_6067846_15	365044.Pnap_3482	1.738e-125	409.0	COG0451@1|root,COG0451@2|Bacteria,1MX2J@1224|Proteobacteria,2VJHC@28216|Betaproteobacteria,4ADQU@80864|Comamonadaceae	28216|Betaproteobacteria	M	PFAM NAD-dependent epimerase dehydratase	wbiG	-	1.1.1.219,5.1.3.2	ko:K00091,ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
DYD3_k127_6067846_11	1114970.PSF113_1654	4.724e-136	443.0	COG0438@1|root,COG0438@2|Bacteria,1MY5T@1224|Proteobacteria,1RYAI@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_4_4,Glycos_transf_1
DYD3_k127_6067846_9	69279.BG36_08260	3.085e-170	552.0	COG5360@1|root,COG5360@2|Bacteria,1MUJ4@1224|Proteobacteria,2U48V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Heparinase II/III N-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Hepar_II_III,Hepar_II_III_N
DYD3_k127_6067846_19	1123367.C666_12590	2.735e-90	301.0	COG0381@1|root,COG0381@2|Bacteria,1QUYI@1224|Proteobacteria,2WFJ1@28216|Betaproteobacteria,2KVGN@206389|Rhodocyclales	206389|Rhodocyclales	G	Belongs to the UDP-N-acetylglucosamine 2-epimerase family	-	-	5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_6067846_32	1348657.M622_08980	3.435e-42	156.0	COG0381@1|root,COG0381@2|Bacteria,1QUYI@1224|Proteobacteria,2WFJ1@28216|Betaproteobacteria,2KVGN@206389|Rhodocyclales	206389|Rhodocyclales	G	Belongs to the UDP-N-acetylglucosamine 2-epimerase family	-	-	5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_6067846_37	1121413.JMKT01000015_gene294	1.958e-22	98.0	COG0381@1|root,COG0381@2|Bacteria,1QUYI@1224|Proteobacteria,42MSY@68525|delta/epsilon subdivisions,2WJXR@28221|Deltaproteobacteria,2M98J@213115|Desulfovibrionales	28221|Deltaproteobacteria	M	Belongs to the UDP-N-acetylglucosamine 2-epimerase family	wecB	-	5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_6067846_1	945550.VISI1226_14926	0.0	1007.0	COG0673@1|root,COG1063@1|root,COG0673@2|Bacteria,COG1063@2|Bacteria,1MV7C@1224|Proteobacteria,1RSE0@1236|Gammaproteobacteria,1XUDD@135623|Vibrionales	135623|Vibrionales	E	Oxidoreductase family, C-terminal alpha/beta domain	-	-	1.1.1.18,1.1.1.369	ko:K00010	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130	-	R01183,R09951	RC00182	ko00000,ko00001,ko01000	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_6067846_23	929562.Emtol_3927	3.018e-62	227.0	COG1835@1|root,COG1835@2|Bacteria,4NTF2@976|Bacteroidetes,47X85@768503|Cytophagia	976|Bacteroidetes	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
DYD3_k127_6067846_34	552811.Dehly_0401	3.992e-29	120.0	COG3039@1|root,COG3039@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	ko:K07481	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DUF772
DYD3_k127_6067846_43	1205753.A989_17668	0.0003116	44.0	COG3039@1|root,COG3039@2|Bacteria,1MVDK@1224|Proteobacteria,1RR0T@1236|Gammaproteobacteria,1X4YK@135614|Xanthomonadales	135614|Xanthomonadales	L	Transposase and inactivated derivatives, IS5 family	-	-	-	ko:K07481	-	-	-	-	ko00000	-	-	-	DDE_Tnp_1,DUF772
DYD3_k127_6067846_12	891968.Anamo_1187	6.7e-133	433.0	COG0381@1|root,COG0381@2|Bacteria,3TAHZ@508458|Synergistetes	508458|Synergistetes	G	Belongs to the UDP-N-acetylglucosamine 2-epimerase family	-	-	5.1.3.14,5.1.3.23	ko:K01791,ko:K13019	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420,R09600	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_6067846_6	172088.AUGA01000008_gene990	8.334e-175	567.0	COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,2TSCY@28211|Alphaproteobacteria,3JS0Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	6.3.5.4	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	-	R00578	RC00010	ko00000,ko00001,ko01000,ko01002	-	-	-	Asn_synthase,GATase_7
DYD3_k127_6067846_24	1197130.BAFM01000005_gene1096	9.945e-61	225.0	COG0438@1|root,arCOG01410@2157|Archaea,2XV5R@28890|Euryarchaeota,23USK@183963|Halobacteria	183963|Halobacteria	M	COG0438 Glycosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_6067846_25	468059.AUHA01000002_gene1160	3.698e-59	221.0	COG1331@1|root,COG1331@2|Bacteria,4NIPN@976|Bacteroidetes	976|Bacteroidetes	O	Highly conserved protein containing a thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_88
DYD3_k127_6067846_35	1123367.C666_12590	1.038e-28	117.0	COG0381@1|root,COG0381@2|Bacteria,1QUYI@1224|Proteobacteria,2WFJ1@28216|Betaproteobacteria,2KVGN@206389|Rhodocyclales	206389|Rhodocyclales	G	Belongs to the UDP-N-acetylglucosamine 2-epimerase family	-	-	5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_6067846_26	768671.ThimaDRAFT_0424	4.062e-58	207.0	COG0381@1|root,COG0381@2|Bacteria,1QUYI@1224|Proteobacteria,1SZZW@1236|Gammaproteobacteria,1WXD4@135613|Chromatiales	135613|Chromatiales	M	Belongs to the UDP-N-acetylglucosamine 2-epimerase family	-	-	5.1.3.14,5.1.3.23	ko:K01791,ko:K13019	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420,R09600	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_6067846_0	1122164.JHWF01000011_gene2498	0.0	1012.0	COG0673@1|root,COG1063@1|root,COG0673@2|Bacteria,COG1063@2|Bacteria,1MW7C@1224|Proteobacteria,1RYJU@1236|Gammaproteobacteria,1JFGA@118969|Legionellales	118969|Legionellales	E	Zinc-binding dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	ADH_zinc_N
DYD3_k127_6067846_42	521460.Athe_0051	0.0001114	54.0	COG0457@1|root,COG3307@1|root,COG0457@2|Bacteria,COG3307@2|Bacteria,1TRQM@1239|Firmicutes,249I7@186801|Clostridia,42EMW@68295|Thermoanaerobacterales	186801|Clostridia	M	PFAM O-Antigen	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_8,Wzy_C
DYD3_k127_6067846_29	102129.Lepto7375DRAFT_2258	9.431e-49	189.0	COG0438@1|root,COG0438@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	-	-	-	ko:K02844	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT4	-	Glyco_tran_WbsX,Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2
DYD3_k127_6067846_41	1449345.JHWC01000005_gene1171	1.041e-05	57.0	COG0438@1|root,COG0438@2|Bacteria,1N57K@1224|Proteobacteria,42Z80@68525|delta/epsilon subdivisions,2YRKI@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	M	Glycosyltransferase Family 4	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4
DYD3_k127_6067846_21	1304888.ATWF01000001_gene2461	1.674e-86	303.0	COG2244@1|root,COG2244@2|Bacteria,2GGIU@200930|Deferribacteres	200930|Deferribacteres	S	Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6067846_40	868864.Dester_0062	5.13e-07	59.0	COG0223@1|root,COG0223@2|Bacteria,2G3PD@200783|Aquificae	200783|Aquificae	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	fmt	GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.1.2.9	ko:K00604	ko00670,ko00970,map00670,map00970	-	R03940	RC00026,RC00165	ko00000,ko00001,ko01000	-	-	-	Formyl_trans_C,Formyl_trans_N
DYD3_k127_6067846_36	103733.JNYO01000022_gene7029	5.634e-28	128.0	COG0399@1|root,COG0399@2|Bacteria,2IF9Z@201174|Actinobacteria	201174|Actinobacteria	E	DegT/DnrJ/EryC1/StrS aminotransferase family	-	-	2.6.1.33	ko:K21328	ko00523,ko01130,map00523,map01130	-	R02773,R11475	RC00006,RC00781,RC01514	ko00000,ko00001,ko01000	-	-	-	DegT_DnrJ_EryC1
DYD3_k127_6067846_14	1429916.X566_17595	1.228e-126	422.0	COG0451@1|root,COG0451@2|Bacteria,1NEDD@1224|Proteobacteria,2UHPE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	GM	ADP-glyceromanno-heptose 6-epimerase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6067846_28	1547437.LL06_23225	1.126e-50	190.0	COG0500@1|root,COG0500@2|Bacteria	2|Bacteria	Q	methyltransferase activity	-	-	2.1.1.187,2.1.1.235,2.1.1.324	ko:K00563,ko:K13307,ko:K13330,ko:K15256	ko00523,ko01130,map00523,map01130	M00796,M00802	R06439,R07233,R08932,R11452,R11453	RC00003,RC01515,RC02262,RC03440	ko00000,ko00001,ko00002,ko01000,ko03009,ko03016	-	-	-	Methyltransf_11,Methyltransf_12,Methyltransf_23,Methyltransf_25
DYD3_k127_6067846_20	1547437.LL06_23205	4.457e-88	307.0	COG0726@1|root,COG0726@2|Bacteria,1R6DC@1224|Proteobacteria	1224|Proteobacteria	G	polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6067846_5	1304888.ATWF01000001_gene2452	9.382e-187	602.0	COG0367@1|root,COG0367@2|Bacteria	2|Bacteria	E	asparagine synthase	asnB	-	6.3.5.4	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	-	R00578	RC00010	ko00000,ko00001,ko01000,ko01002	-	-	-	Asn_synthase,GATase_6,GATase_7
DYD3_k127_6067846_38	744980.TRICHSKD4_0588	1.557e-18	96.0	COG0500@1|root,COG2226@2|Bacteria,1QWJE@1224|Proteobacteria,2U37M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_6067846_18	1304888.ATWF01000001_gene2451	1.817e-90	304.0	COG0463@1|root,COG0463@2|Bacteria,2GGMK@200930|Deferribacteres	200930|Deferribacteres	M	Glycosyl transferase family 2	-	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2
DYD3_k127_6067846_8	1159870.KB907784_gene1088	2.022e-172	546.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2VJDZ@28216|Betaproteobacteria,3T5B6@506|Alcaligenaceae	28216|Betaproteobacteria	E	Belongs to the DegT DnrJ EryC1 family	wlbC	-	2.6.1.98	ko:K13017	ko00520,map00520	-	R10141	RC00006,RC00781	ko00000,ko00001,ko01000,ko01005,ko01007	-	-	-	DegT_DnrJ_EryC1
DYD3_k127_6067846_16	1392838.AWNM01000055_gene2860	3.376e-95	315.0	COG0110@1|root,COG0110@2|Bacteria,1MZV9@1224|Proteobacteria,2VN51@28216|Betaproteobacteria,3T51S@506|Alcaligenaceae	28216|Betaproteobacteria	S	Hexapeptide repeat of succinyl-transferase	bplB	-	2.3.1.201	ko:K13018	ko00520,map00520	-	R10100	RC00004,RC00166	ko00000,ko00001,ko01000,ko01005	-	-	-	Hexapep
DYD3_k127_6067846_7	314278.NB231_16768	1.881e-174	552.0	COG0673@1|root,COG0673@2|Bacteria,1MUP0@1224|Proteobacteria,1S1E3@1236|Gammaproteobacteria,1WZQT@135613|Chromatiales	135613|Chromatiales	S	Oxidoreductase family, C-terminal alpha/beta domain	-	-	1.1.1.335	ko:K13020	ko00520,map00520	-	R10140	RC00182	ko00000,ko00001,ko01000,ko01005	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_6067846_27	713587.THITH_00410	2.892e-51	187.0	COG0250@1|root,COG0250@2|Bacteria,1N01W@1224|Proteobacteria,1S91B@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. RfaH is recruited into a multi-component RNA polymerase complex by the ops element, which is a short conserved DNA sequence located downstream of the main promoter of these operons. Once bound, RfaH suppresses pausing and inhibits Rho- dependent and intrinsic termination at a subset of sites. Termination signals are bypassed, which allows complete synthesis of long RNA chains	rfaH	GO:0001000,GO:0001073,GO:0001121,GO:0001124,GO:0003674,GO:0003676,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008494,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031554,GO:0031564,GO:0032268,GO:0032270,GO:0032774,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045727,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:2000112,GO:2001141	-	ko:K05785	-	-	-	-	ko00000,ko03000	-	-	-	NusG
DYD3_k127_6067846_33	314278.NB231_16763	4.601e-31	126.0	COG1846@1|root,COG1846@2|Bacteria,1N0TY@1224|Proteobacteria,1SADN@1236|Gammaproteobacteria,1WZ4E@135613|Chromatiales	135613|Chromatiales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_24
DYD3_k127_6067846_39	1168065.DOK_16663	1.933e-17	83.0	COG2161@1|root,COG2161@2|Bacteria,1N07B@1224|Proteobacteria,1S90V@1236|Gammaproteobacteria,1JAIW@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	D	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_6076225_0	1217708.F887_01738	2.312e-63	224.0	COG1714@1|root,COG1714@2|Bacteria,1PRKM@1224|Proteobacteria,1SIDK@1236|Gammaproteobacteria,3NRYW@468|Moraxellaceae	1236|Gammaproteobacteria	S	RDD family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6076225_1	1463895.JODA01000017_gene6207	2.799e-14	73.0	2E9JR@1|root,333SK@2|Bacteria,2GJVC@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6106917_0	1500890.JQNL01000001_gene2539	9.833e-22	96.0	COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,1RQUR@1236|Gammaproteobacteria,1X2Z8@135614|Xanthomonadales	135614|Xanthomonadales	F	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen	-	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	LAGLIDADG_3,Ribonuc_red_lgC,Ribonuc_red_lgN
DYD3_k127_6119700_4	240016.ABIZ01000001_gene4464	1.564e-31	127.0	2EF8R@1|root,3391P@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6119700_0	351348.Maqu_4285	1.452e-110	381.0	COG0553@1|root,COG0553@2|Bacteria,1MV6M@1224|Proteobacteria,1RQ34@1236|Gammaproteobacteria,466BB@72275|Alteromonadaceae	1236|Gammaproteobacteria	L	SNF2 family N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,Mrr_cat,SNF2_N
DYD3_k127_6119700_12	476272.RUMHYD_03319	1.956e-08	58.0	299FZ@1|root,2ZWIR@2|Bacteria,1W4MI@1239|Firmicutes,2564U@186801|Clostridia	186801|Clostridia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6119700_3	95619.PM1_0217565	1.957e-37	145.0	2CCAE@1|root,33Y7C@2|Bacteria,1NW7S@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6119700_13	511062.GU3_16304	4.719e-07	53.0	2EJ4Z@1|root,33CW7@2|Bacteria,1NIXC@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6119700_9	315749.Bcer98_2955	1.693e-12	72.0	2EGZP@1|root,33ART@2|Bacteria,1VKPB@1239|Firmicutes,4HR69@91061|Bacilli	91061|Bacilli	S	YopX protein	-	-	-	-	-	-	-	-	-	-	-	-	YopX
DYD3_k127_6119700_2	1439940.BAY1663_02299	1.089e-57	209.0	2C2XN@1|root,32GT6@2|Bacteria,1REZE@1224|Proteobacteria	1224|Proteobacteria	S	PFAM ERF family protein	-	-	-	-	-	-	-	-	-	-	-	-	ERF
DYD3_k127_6119700_1	670292.JH26_14425	5.207e-66	231.0	2DIG9@1|root,3036R@2|Bacteria,1RBPA@1224|Proteobacteria,2U6EP@28211|Alphaproteobacteria,1JV25@119045|Methylobacteriaceae	28211|Alphaproteobacteria	L	YqaJ-like viral recombinase domain	-	-	-	-	-	-	-	-	-	-	-	-	YqaJ
DYD3_k127_6119700_17	388401.RB2150_15555	0.0004029	53.0	COG5434@1|root,COG5434@2|Bacteria,1MVBW@1224|Proteobacteria,2TVNM@28211|Alphaproteobacteria,3ZI2Y@58840|unclassified Rhodobacteraceae	28211|Alphaproteobacteria	M	Pectate lyase superfamily protein	-	-	-	-	-	-	-	-	-	-	-	-	Beta_helix,Pectate_lyase_3
DYD3_k127_6119700_7	1528106.JRJE01000020_gene2293	3.988e-16	81.0	COG4675@1|root,COG4675@2|Bacteria,1N0FZ@1224|Proteobacteria,2UDXB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Phage Tail Collar Domain	-	-	-	-	-	-	-	-	-	-	-	-	Collar
DYD3_k127_6119700_8	765698.Mesci_3833	1.587e-13	83.0	COG4675@1|root,COG4675@2|Bacteria,1QWQH@1224|Proteobacteria,2UUR5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	tail collar domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Collar
DYD3_k127_6119700_10	665942.HMPREF1022_02936	6.946e-12	72.0	2B8VT@1|root,32261@2|Bacteria,1P585@1224|Proteobacteria,432GH@68525|delta/epsilon subdivisions,2WY2B@28221|Deltaproteobacteria,2MCYA@213115|Desulfovibrionales	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6119700_16	264203.ZMO0628	7.052e-05	55.0	COG1216@1|root,COG1216@2|Bacteria	2|Bacteria	V	Glycosyl transferase, family 2	MA20_08330	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6119700_5	156889.Mmc1_1716	1.142e-18	98.0	28NGF@1|root,2ZBII@2|Bacteria,1R9KY@1224|Proteobacteria,2U1P7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6119700_11	411483.FAEPRAA2165_01044	2.171e-10	64.0	COG1783@1|root,COG1783@2|Bacteria,1TT85@1239|Firmicutes,24ETQ@186801|Clostridia,3WPQU@541000|Ruminococcaceae	186801|Clostridia	S	Terminase-like family	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6
DYD3_k127_6160161_2	231434.JQJH01000008_gene2708	0.0001616	46.0	COG5475@1|root,COG5475@2|Bacteria,1NKGA@1224|Proteobacteria,2UN7U@28211|Alphaproteobacteria,3NBWU@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Uncharacterized small protein (DUF2158)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2158
DYD3_k127_6166499_5	237368.SCABRO_03129	4.405e-15	83.0	COG1040@1|root,COG1040@2|Bacteria,2J03E@203682|Planctomycetes	203682|Planctomycetes	S	Phosphoribosyl transferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Pribosyltran
DYD3_k127_6166499_4	262724.TT_C1013	3.717e-17	93.0	COG4972@1|root,COG4972@2|Bacteria,1WJKT@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	NU	TIGRFAM type IV pilus assembly protein PilM	pilM	-	-	ko:K02662	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	PilM_2
DYD3_k127_6166499_0	511051.CSE_14720	5.629e-120	406.0	COG2804@1|root,COG2804@2|Bacteria	2|Bacteria	NU	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB	-	-	-	ko:K02652	-	-	-	-	ko00000,ko02035,ko02044	3.A.15.2	-	-	T2SSE,T2SSE_N
DYD3_k127_6166499_6	547559.Nmag_1130	1.66e-14	78.0	COG0745@1|root,arCOG02595@2157|Archaea,2XZSB@28890|Euryarchaeota,23XQF@183963|Halobacteria	183963|Halobacteria	T	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_6166499_1	2045.KR76_09715	2.258e-97	329.0	COG2805@1|root,COG2805@2|Bacteria,2I9GT@201174|Actinobacteria,4DQ20@85009|Propionibacteriales	201174|Actinobacteria	NU	twitching motility protein	-	-	-	ko:K02669	-	-	-	-	ko00000,ko02035,ko02044	3.A.15.2	-	-	T2SSE
DYD3_k127_6166499_2	1379281.AVAG01000052_gene929	8.341e-64	234.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,42NES@68525|delta/epsilon subdivisions,2WJ0V@28221|Deltaproteobacteria,2MG22@213115|Desulfovibrionales	28221|Deltaproteobacteria	NU	Type II secretion system (T2SS), protein F	pilC	-	-	ko:K02653	-	-	-	-	ko00000,ko02035,ko02044	3.A.15.2	-	-	T2SSF
DYD3_k127_6166499_7	1123511.KB905844_gene1224	2.938e-05	53.0	COG4968@1|root,COG4968@2|Bacteria,1VD7G@1239|Firmicutes,4H9IM@909932|Negativicutes	909932|Negativicutes	NU	Prokaryotic N-terminal methylation motif	-	-	-	-	-	-	-	-	-	-	-	-	N_methyl
DYD3_k127_6166499_8	1048339.KB913029_gene1841	0.0001375	50.0	COG2165@1|root,COG2165@2|Bacteria,2GTN8@201174|Actinobacteria,4ETJ5@85013|Frankiales	201174|Actinobacteria	NU	Prokaryotic N-terminal methylation motif	-	-	-	ko:K02650	ko02020,map02020	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.15.2	-	-	N_methyl
DYD3_k127_6166499_9	1313304.CALK_1098	0.0003029	50.0	COG4968@1|root,COG4968@2|Bacteria	2|Bacteria	NU	Prokaryotic N-terminal methylation motif	-	-	-	ko:K02456,ko:K02650	ko02020,ko03070,ko05111,map02020,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	N_methyl,SBP_bac_10
DYD3_k127_6166499_3	243231.GSU2043	6.052e-29	125.0	COG1989@1|root,COG1989@2|Bacteria,1MUZF@1224|Proteobacteria,42S2A@68525|delta/epsilon subdivisions,2WMQ8@28221|Deltaproteobacteria,43TK2@69541|Desulfuromonadales	28221|Deltaproteobacteria	M	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	pilD	-	3.4.23.43	ko:K02654	-	M00331	-	-	ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2	-	-	DiS_P_DiS,Peptidase_A24
DYD3_k127_6224809_0	398767.Glov_1005	1.357e-178	564.0	COG2801@1|root,COG2801@2|Bacteria,1MZ45@1224|Proteobacteria,42MM6@68525|delta/epsilon subdivisions,2WJ53@28221|Deltaproteobacteria	28221|Deltaproteobacteria	L	PFAM Integrase catalytic region	-	-	-	-	-	-	-	-	-	-	-	-	HTH_29,rve
DYD3_k127_6224809_3	1141662.OOA_10826	1.086e-20	95.0	COG3863@1|root,COG3863@2|Bacteria,1RBGX@1224|Proteobacteria,1S01D@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	yiiX	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C92
DYD3_k127_6224809_2	1124991.MU9_2339	6.778e-24	102.0	COG3863@1|root,COG3863@2|Bacteria,1RBGX@1224|Proteobacteria,1S01D@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	yiiX	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C92
DYD3_k127_6224809_1	1286106.MPL1_02313	1.148e-55	199.0	2B14M@1|root,31TIF@2|Bacteria,1RH0J@1224|Proteobacteria,1S6U0@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF2938)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2938
DYD3_k127_6251853_2	66269.NL54_06425	2.261e-37	143.0	28M8W@1|root,2ZAMX@2|Bacteria,1N3D9@1224|Proteobacteria,1SAIK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Domain of unknown function (DUF4062)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4062
DYD3_k127_6251853_0	631362.Thi970DRAFT_02502	6.527e-137	452.0	COG3464@1|root,COG3464@2|Bacteria,1N5CJ@1224|Proteobacteria,1T4WB@1236|Gammaproteobacteria,1WZSX@135613|Chromatiales	1236|Gammaproteobacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6251853_1	1536773.R70331_21295	2.705e-47	176.0	COG1479@1|root,COG1479@2|Bacteria,1TUR0@1239|Firmicutes,4IQK7@91061|Bacilli	91061|Bacilli	S	Protein of unknown function (DUF1524)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1524,DUF262
DYD3_k127_6269985_16	1179773.BN6_24270	1.423e-12	71.0	COG1309@1|root,COG1309@2|Bacteria,2GYYS@201174|Actinobacteria,4E5SC@85010|Pseudonocardiales	201174|Actinobacteria	K	Tetracyclin repressor, C-terminal all-alpha domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C,TetR_N
DYD3_k127_6269985_0	1137799.GZ78_13070	0.0	1068.0	COG0388@1|root,COG3344@1|root,COG0388@2|Bacteria,COG3344@2|Bacteria,1MX9Z@1224|Proteobacteria,1S20A@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	reverse transcriptase	-	-	-	-	-	-	-	-	-	-	-	-	RVT_1
DYD3_k127_6269985_7	267377.MMP0754	2.985e-64	235.0	arCOG09613@1|root,arCOG09613@2157|Archaea	2157|Archaea	S	Domain of unknown function (DUF4263)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4263
DYD3_k127_6269985_1	706587.Desti_0614	2.841e-295	914.0	COG0433@1|root,COG0433@2|Bacteria,1MUSH@1224|Proteobacteria,42RE9@68525|delta/epsilon subdivisions,2WNSX@28221|Deltaproteobacteria,2MQZV@213462|Syntrophobacterales	28221|Deltaproteobacteria	S	Domain of unknown function DUF87	-	-	-	ko:K06915	-	-	-	-	ko00000	-	-	-	DUF853,DUF87
DYD3_k127_6269985_6	471854.Dfer_0960	4.929e-71	255.0	29ICV@1|root,305A1@2|Bacteria,4NZNU@976|Bacteroidetes	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6269985_3	225849.swp_0274	1.472e-97	327.0	2910Q@1|root,2ZNNC@2|Bacteria,1PCP3@1224|Proteobacteria,1S0BX@1236|Gammaproteobacteria,2Q953@267890|Shewanellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6269985_4	857087.Metme_0332	4.625e-87	298.0	COG1373@1|root,COG1373@2|Bacteria,1R4HK@1224|Proteobacteria,1SSIT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	ATPase (AAA superfamily	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6269985_11	313628.LNTAR_15032	1.418e-50	183.0	COG1463@1|root,COG1463@2|Bacteria	2|Bacteria	Q	ABC-type transport system involved in resistance to organic solvents, periplasmic component	-	-	-	ko:K02067	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	DUF3465
DYD3_k127_6269985_18	661367.LLO_0964	3.164e-10	73.0	2DMPK@1|root,32SWI@2|Bacteria,1NC5K@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PASTA
DYD3_k127_6269985_12	1298864.AUEQ01000001_gene4309	2.585e-48	192.0	COG1376@1|root,COG3170@1|root,COG1376@2|Bacteria,COG3170@2|Bacteria,2HFSC@201174|Actinobacteria,23E20@1762|Mycobacteriaceae	201174|Actinobacteria	NU	ErfK ybiS ycfS ynhG family protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6269985_21	748247.AZKH_3390	3.569e-05	49.0	29WJ4@1|root,30I5C@2|Bacteria,1PU4D@1224|Proteobacteria,2WAPS@28216|Betaproteobacteria,2KZ8T@206389|Rhodocyclales	206389|Rhodocyclales	S	EF hand	-	-	-	-	-	-	-	-	-	-	-	-	EF-hand_5
DYD3_k127_6269985_20	1216007.AOPM01000103_gene633	5.8e-06	54.0	COG3637@1|root,COG3637@2|Bacteria,1N3BJ@1224|Proteobacteria,1SFEZ@1236|Gammaproteobacteria,2Q1BE@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	M	OmpA-like transmembrane domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA_membrane
DYD3_k127_6269985_15	1304885.AUEY01000017_gene3757	5.046e-32	128.0	COG0745@1|root,COG0745@2|Bacteria	1304885.AUEY01000017_gene3757|-	T	phosphorelay signal transduction system	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6269985_9	1517681.HW45_17890	1.342e-59	210.0	COG1813@1|root,COG1813@2|Bacteria,1QZ14@1224|Proteobacteria,1T3ZF@1236|Gammaproteobacteria,1XWYG@135623|Vibrionales	135623|Vibrionales	K	2TM domain	-	-	-	-	-	-	-	-	-	-	-	-	2TM,HTH_3
DYD3_k127_6269985_10	1132855.KB913035_gene1758	1.548e-57	202.0	COG3439@1|root,COG3439@2|Bacteria,1RHJQ@1224|Proteobacteria,2W3X3@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Domain of unknown function DUF302	-	-	-	-	-	-	-	-	-	-	-	-	DUF302
DYD3_k127_6269985_8	1121939.L861_01335	5.283e-64	224.0	COG1280@1|root,COG1280@2|Bacteria,1MXAI@1224|Proteobacteria,1S3XS@1236|Gammaproteobacteria,1XJRS@135619|Oceanospirillales	135619|Oceanospirillales	E	PFAM Lysine exporter protein (LYSE YGGA)	-	-	-	-	-	-	-	-	-	-	-	-	LysE
DYD3_k127_6269985_13	349521.HCH_06549	1.726e-42	158.0	COG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,1S829@1236|Gammaproteobacteria,1XRI9@135619|Oceanospirillales	135619|Oceanospirillales	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_6269985_14	1129794.C427_2095	2.125e-37	141.0	COG3369@1|root,COG3369@2|Bacteria,1N6QZ@1224|Proteobacteria,1SCN4@1236|Gammaproteobacteria,46BPN@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	Iron-binding zinc finger CDGSH type	-	-	-	-	-	-	-	-	-	-	-	-	zf-CDGSH
DYD3_k127_6269985_2	1236959.BAMT01000007_gene2745	2.34e-163	520.0	COG3673@1|root,COG3673@2|Bacteria,1NFRW@1224|Proteobacteria,2WBKY@28216|Betaproteobacteria,2KNX0@206350|Nitrosomonadales	206350|Nitrosomonadales	S	Uncharacterized alpha/beta hydrolase domain (DUF2235)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2235
DYD3_k127_6269985_17	1037409.BJ6T_39930	8.397e-11	64.0	COG0824@1|root,COG0824@2|Bacteria,1R6A6@1224|Proteobacteria,2TU6J@28211|Alphaproteobacteria,3JR33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thioesterase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6308374_2	1121447.JONL01000001_gene430	5.107e-85	293.0	COG2339@1|root,COG2339@2|Bacteria	2|Bacteria	D	peptidase activity	XK27_10720	-	-	-	-	-	-	-	-	-	-	-	FHA,PrsW-protease
DYD3_k127_6308374_0	1443665.JACA01000003_gene613	1.88e-93	326.0	COG0596@1|root,COG0596@2|Bacteria,4NQYB@976|Bacteroidetes,1I318@117743|Flavobacteriia,2YK2Q@290174|Aquimarina	976|Bacteroidetes	S	TAP-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_4
DYD3_k127_6308374_4	1209989.TepiRe1_0955	5.993e-46	181.0	COG1403@1|root,COG1403@2|Bacteria,1V68V@1239|Firmicutes,24X7G@186801|Clostridia	186801|Clostridia	V	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6308374_6	634956.Geoth_1994	1.818e-35	140.0	COG1310@1|root,COG1310@2|Bacteria,1VF3A@1239|Firmicutes,4ITCV@91061|Bacilli	91061|Bacilli	H	Prokaryotic homologs of the JAB domain	-	-	-	-	-	-	-	-	-	-	-	-	Prok-JAB
DYD3_k127_6308374_3	1502852.FG94_01725	5.187e-63	237.0	COG0476@1|root,COG0476@2|Bacteria,1R89K@1224|Proteobacteria,2WB3T@28216|Betaproteobacteria,47864@75682|Oxalobacteraceae	28216|Betaproteobacteria	H	ThiF family	-	-	-	-	-	-	-	-	-	-	-	-	ThiF
DYD3_k127_6308374_5	580331.Thit_1873	7.919e-45	171.0	28KCT@1|root,2Z9ZM@2|Bacteria,1V4TK@1239|Firmicutes,24FYS@186801|Clostridia	186801|Clostridia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6308374_1	1244869.H261_06576	2.105e-92	308.0	COG1032@1|root,COG1032@2|Bacteria,1MY2Y@1224|Proteobacteria,2TUIT@28211|Alphaproteobacteria,2JRZP@204441|Rhodospirillales	204441|Rhodospirillales	C	B12 binding domain	-	-	-	-	-	-	-	-	-	-	-	-	B12-binding,DUF4070,Radical_SAM
DYD3_k127_632655_10	639283.Snov_4439	2.489e-05	53.0	COG2020@1|root,COG2020@2|Bacteria,1RECR@1224|Proteobacteria,2U6MH@28211|Alphaproteobacteria,3EZ8Z@335928|Xanthobacteraceae	28211|Alphaproteobacteria	O	Isoprenylcysteine carboxyl methyltransferase (ICMT) family	-	-	-	-	-	-	-	-	-	-	-	-	ICMT,PEMT
DYD3_k127_632655_5	1504981.KO116_2129	8.944e-56	201.0	2ABSC@1|root,3118T@2|Bacteria,1RDBX@1224|Proteobacteria,1S5RV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_632655_4	1207063.P24_07061	1.645e-63	232.0	COG3170@1|root,COG3170@2|Bacteria,1QDEM@1224|Proteobacteria,2UCG6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NU	Protein of unknown function (DUF1207)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1207
DYD3_k127_632655_1	1323663.AROI01000009_gene3564	9.499e-127	406.0	COG4312@1|root,COG4312@2|Bacteria,1NAXN@1224|Proteobacteria,1S3RN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF899
DYD3_k127_632655_0	1323663.AROI01000009_gene3563	1.383e-188	591.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,1RP9W@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI
DYD3_k127_632655_8	452637.Oter_4296	1.919e-36	142.0	COG0454@1|root,COG0456@2|Bacteria	2|Bacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD3_k127_632655_3	1095769.CAHF01000023_gene440	1.333e-64	230.0	2EJUZ@1|root,333IS@2|Bacteria,1NFIG@1224|Proteobacteria,2VWAA@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Putative prokaryotic signal transducing protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2007
DYD3_k127_632655_9	1268239.PALB_10820	1.253e-33	141.0	2ECVU@1|root,336T5@2|Bacteria,1NEXQ@1224|Proteobacteria,1SG57@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_632655_6	207954.MED92_12401	3.018e-47	181.0	COG2199@1|root,COG2199@2|Bacteria,1RDMU@1224|Proteobacteria,1RQC7@1236|Gammaproteobacteria,1XPJJ@135619|Oceanospirillales	135619|Oceanospirillales	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
DYD3_k127_632655_7	765914.ThisiDRAFT_0293	2.067e-45	171.0	COG2928@1|root,COG2928@2|Bacteria,1R79M@1224|Proteobacteria,1S6CC@1236|Gammaproteobacteria,1WZFF@135613|Chromatiales	135613|Chromatiales	S	Protein of unknown function (DUF502)	-	-	-	-	-	-	-	-	-	-	-	-	DUF502
DYD3_k127_6371171_2	4538.ORGLA02G0159300.1	1.692e-06	57.0	COG2801@1|root,KOG0017@2759|Eukaryota,37ZVM@33090|Viridiplantae,3GM9F@35493|Streptophyta,3M6PI@4447|Liliopsida,3IJ0B@38820|Poales	35493|Streptophyta	L	transposition, RNA-mediated	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6371171_0	3760.EMJ11389	0.0	1188.0	COG2801@1|root,KOG0017@2759|Eukaryota,37M1D@33090|Viridiplantae,3GCV5@35493|Streptophyta,4JSHM@91835|fabids	35493|Streptophyta	L	zinc finger	-	-	-	-	-	-	-	-	-	-	-	-	RVT_1,Retrotrans_gag,rve,zf-CCHC,zf-H2C2
DYD3_k127_6391750_0	1117319.PSPO_20456	2.801e-63	225.0	COG0545@1|root,COG0545@2|Bacteria,1RDA1@1224|Proteobacteria,1RRKU@1236|Gammaproteobacteria,2Q0YT@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	M	COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1	fkpA	-	5.2.1.8	ko:K03772	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	FKBP_C,FKBP_N
DYD3_k127_6391750_1	930169.B5T_01966	1.808e-46	169.0	COG4714@1|root,COG4714@2|Bacteria,1N40I@1224|Proteobacteria,1S1R3@1236|Gammaproteobacteria,1XNJF@135619|Oceanospirillales	135619|Oceanospirillales	S	Protein of unknown function (DUF2167)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2167
DYD3_k127_6397679_0	1280706.AUJE01000026_gene1221	6.597e-22	109.0	COG1061@1|root,COG4951@1|root,COG1061@2|Bacteria,COG4951@2|Bacteria,1TS5R@1239|Firmicutes,4H933@909932|Negativicutes	909932|Negativicutes	L	DEAD-like helicases superfamily	-	-	-	-	-	-	-	-	-	-	-	-	ResIII
DYD3_k127_6397679_1	572478.Vdis_1198	0.0001677	48.0	COG1758@1|root,arCOG01268@2157|Archaea,2XR3X@28889|Crenarchaeota	28889|Crenarchaeota	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoK	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03014,ko:K03055	ko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169	M00180,M00181,M00182,M00184	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb6
DYD3_k127_6405625_0	686340.Metal_3570	3.098e-120	398.0	COG0223@1|root,COG1024@1|root,COG0223@2|Bacteria,COG1024@2|Bacteria,1MWYJ@1224|Proteobacteria,1RZSE@1236|Gammaproteobacteria,1XG82@135618|Methylococcales	135618|Methylococcales	IJ	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1,Formyl_trans_C,Formyl_trans_N
DYD3_k127_6411174_0	1121123.AUAO01000002_gene166	2.085e-06	57.0	COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1MU31@1224|Proteobacteria,2TRJF@28211|Alphaproteobacteria,2KF96@204458|Caulobacterales	204458|Caulobacterales	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	polA	-	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	-	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1
DYD3_k127_6411174_1	1111728.ATYS01000028_gene2664	4.545e-05	51.0	COG3613@1|root,COG3613@2|Bacteria,1RKNZ@1224|Proteobacteria,1SC8F@1236|Gammaproteobacteria	1236|Gammaproteobacteria	F	Domain of unknown function (DUF1937)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1937
DYD3_k127_641739_4	351348.Maqu_1004	1.587e-15	78.0	2EGSX@1|root,33AJ1@2|Bacteria,1NI0V@1224|Proteobacteria,1SGD2@1236|Gammaproteobacteria,4698S@72275|Alteromonadaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_641739_2	392500.Swoo_4823	2.71e-39	150.0	COG0454@1|root,COG0456@2|Bacteria,1QTYD@1224|Proteobacteria,1T1S0@1236|Gammaproteobacteria,2QBUN@267890|Shewanellaceae	1236|Gammaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_7
DYD3_k127_641739_3	760117.JN27_15840	1.614e-20	93.0	COG3070@1|root,COG3070@2|Bacteria,1NF6X@1224|Proteobacteria	1224|Proteobacteria	K	TfoX C-terminal domain	-	-	-	ko:K07343	-	-	-	-	ko00000	-	-	-	TfoX_C
DYD3_k127_641739_1	329726.AM1_0579	1.964e-39	152.0	COG0454@1|root,COG0456@2|Bacteria	2|Bacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_10
DYD3_k127_641739_0	87626.PTD2_10969	2.785e-118	384.0	COG1028@1|root,COG1028@2|Bacteria,1MU3W@1224|Proteobacteria,1SYG7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_641739_5	1380391.JIAS01000012_gene4537	7.278e-08	55.0	COG0625@1|root,COG0625@2|Bacteria,1RJVR@1224|Proteobacteria,2U5SU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_C_3,GST_N_3
DYD3_k127_6571515_10	1121272.KB903293_gene7191	5.382e-14	78.0	28ZFJ@1|root,2ZM73@2|Bacteria,2GR4K@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6571515_7	215803.DB30_3154	1.792e-25	109.0	COG0346@1|root,COG0346@2|Bacteria,1RH79@1224|Proteobacteria,43ACF@68525|delta/epsilon subdivisions,2X5SA@28221|Deltaproteobacteria,2Z208@29|Myxococcales	28221|Deltaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_6571515_4	768710.DesyoDRAFT_0065	1.967e-44	177.0	COG0189@1|root,COG0769@1|root,COG0189@2|Bacteria,COG0769@2|Bacteria,1V3WY@1239|Firmicutes,249AA@186801|Clostridia,26140@186807|Peptococcaceae	186801|Clostridia	D	Mur ligase family, glutamate ligase domain	cphA	-	6.3.2.29,6.3.2.30	ko:K03802	-	-	-	-	ko00000,ko01000	-	-	-	Mur_ligase_C,Mur_ligase_M,RimK
DYD3_k127_6571515_1	1229783.C273_05822	1.014e-67	242.0	COG3634@1|root,COG3634@2|Bacteria,1TPYN@1239|Firmicutes,4H9W1@91061|Bacilli,4GYDU@90964|Staphylococcaceae	91061|Bacilli	O	Alkyl hydroperoxide reductase	ahpF	-	-	ko:K03387	-	-	-	-	ko00000,ko01000	-	-	-	Pyr_redox_2,Thioredoxin_3
DYD3_k127_6571515_0	580331.Thit_1476	5.005e-108	363.0	COG0206@1|root,COG0206@2|Bacteria,1TP6W@1239|Firmicutes,247Z5@186801|Clostridia,42EUU@68295|Thermoanaerobacterales	186801|Clostridia	D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity	ftsZ	-	-	ko:K03531	ko04112,map04112	-	-	-	ko00000,ko00001,ko02048,ko03036,ko04812	-	-	-	FtsZ_C,Tubulin
DYD3_k127_6571515_3	656519.Halsa_1601	2.378e-48	188.0	COG0849@1|root,COG0849@2|Bacteria,1TP1Z@1239|Firmicutes,24948@186801|Clostridia,3WA9N@53433|Halanaerobiales	186801|Clostridia	D	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring	ftsA	-	-	ko:K03590	ko04112,map04112	-	-	-	ko00000,ko00001,ko03036,ko04812	-	-	-	FtsA,SHS2_FTSA
DYD3_k127_6571515_11	1232666.JANE01000003_gene592	5.704e-12	72.0	COG0319@1|root,COG0319@2|Bacteria,1V6BU@1239|Firmicutes,4HIIE@91061|Bacilli,4GYX4@90964|Staphylococcaceae	91061|Bacilli	J	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA	ybeY	-	-	ko:K07042	-	-	-	-	ko00000,ko03009	-	-	-	UPF0054
DYD3_k127_6571515_8	1329516.JPST01000019_gene2739	4.629e-15	87.0	COG0124@1|root,COG0124@2|Bacteria,1TP3D@1239|Firmicutes,4HAM2@91061|Bacilli,27B8A@186824|Thermoactinomycetaceae	91061|Bacilli	J	Histidyl-tRNA synthetase	hisS	-	6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b,tRNA-synt_His
DYD3_k127_6571515_5	867903.ThesuDRAFT_00292	1.564e-36	145.0	COG0681@1|root,COG0681@2|Bacteria,1V7H9@1239|Firmicutes,24HHW@186801|Clostridia,3WDTC@538999|Clostridiales incertae sedis	186801|Clostridia	U	TIGRFAM signal peptidase I, bacterial type	lepB	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24
DYD3_k127_6571515_6	1408439.JHXW01000004_gene1411	8.889e-31	132.0	COG0193@1|root,COG0193@2|Bacteria,379XT@32066|Fusobacteria	32066|Fusobacteria	J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis	pth	GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101	3.1.1.29	ko:K01056	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	Pept_tRNA_hydro
DYD3_k127_6571515_2	316274.Haur_0502	3.359e-54	205.0	COG0539@1|root,COG0539@2|Bacteria,2G656@200795|Chloroflexi,3757Z@32061|Chloroflexia	32061|Chloroflexia	J	PFAM RNA binding S1 domain protein	-	-	-	ko:K02945	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	S1
DYD3_k127_6571515_9	525904.Tter_0072	1.013e-14	81.0	COG2220@1|root,COG2220@2|Bacteria,2NR9T@2323|unclassified Bacteria	2|Bacteria	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_3
DYD3_k127_6580176_3	1121015.N789_10540	4.501e-27	111.0	COG2010@1|root,COG2010@2|Bacteria,1MVYK@1224|Proteobacteria,1RQH2@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6580176_2	96561.Dole_2611	3.72e-38	146.0	COG2164@1|root,COG2164@2|Bacteria	2|Bacteria	-	-	MA20_34860	-	-	ko:K09143	-	-	-	-	ko00000	-	-	-	DUF3830
DYD3_k127_6580176_0	502025.Hoch_1502	3.207e-63	245.0	COG3391@1|root,COG3391@2|Bacteria,1Q6NR@1224|Proteobacteria,433G0@68525|delta/epsilon subdivisions,2WXM3@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	amine dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6580176_4	96561.Dole_2611	1.36e-16	81.0	COG2164@1|root,COG2164@2|Bacteria	2|Bacteria	-	-	MA20_34860	-	-	ko:K09143	-	-	-	-	ko00000	-	-	-	DUF3830
DYD3_k127_6580176_5	96561.Dole_2611	1.914e-07	53.0	COG2164@1|root,COG2164@2|Bacteria	2|Bacteria	-	-	MA20_34860	-	-	ko:K09143	-	-	-	-	ko00000	-	-	-	DUF3830
DYD3_k127_6580176_1	377629.TERTU_4019	3.095e-50	180.0	COG5297@1|root,COG5297@2|Bacteria,1QZ9W@1224|Proteobacteria,1RPFR@1236|Gammaproteobacteria,2PP89@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	G	Glycosyl hydrolase family 9	-	-	-	-	-	-	-	-	-	-	-	-	CBM_2,Glyco_hydro_9
DYD3_k127_658782_3	261292.Nit79A3_2773	9.004e-17	81.0	COG2149@1|root,COG2149@2|Bacteria,1N173@1224|Proteobacteria,2VWEE@28216|Betaproteobacteria,373GN@32003|Nitrosomonadales	28216|Betaproteobacteria	S	Domain of unknown function (DUF202)	-	-	-	ko:K00389	-	-	-	-	ko00000	-	-	-	DUF202
DYD3_k127_658782_0	991905.SL003B_0319	2.334e-49	186.0	2BZ50@1|root,33TM6@2|Bacteria,1NTPM@1224|Proteobacteria,2UPEU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_658782_1	102129.Lepto7375DRAFT_3385	6.604e-30	121.0	COG1917@1|root,COG1917@2|Bacteria,1G870@1117|Cyanobacteria	1117|Cyanobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_658782_4	388413.ALPR1_18508	1.051e-14	79.0	2EBD5@1|root,335DV@2|Bacteria,4NWMF@976|Bacteroidetes	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	MoaF_C
DYD3_k127_658782_2	243233.MCA1269	1.916e-27	113.0	COG3339@1|root,COG3339@2|Bacteria,1MZCY@1224|Proteobacteria,1SANY@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1232)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1232
DYD3_k127_6620756_22	1487921.DP68_02125	2.226e-10	66.0	2ENBK@1|root,33FZ7@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6620756_24	339670.Bamb_2379	5.418e-09	61.0	2EGBE@1|root,33A39@2|Bacteria,1N3MX@1224|Proteobacteria,2W4FB@28216|Betaproteobacteria,1KAFZ@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6620756_16	1120977.JHUX01000004_gene2184	2.113e-19	89.0	COG2155@1|root,COG2155@2|Bacteria,1N77I@1224|Proteobacteria,1SHMF@1236|Gammaproteobacteria,3NPGK@468|Moraxellaceae	1236|Gammaproteobacteria	S	Domain of unknown function (DUF378)	-	-	-	ko:K09779	-	-	-	-	ko00000	-	-	-	DUF378
DYD3_k127_6620756_3	1232410.KI421413_gene633	5.441e-81	272.0	2AUXR@1|root,2ZBPW@2|Bacteria,1RAID@1224|Proteobacteria,42QWQ@68525|delta/epsilon subdivisions,2WMRI@28221|Deltaproteobacteria,43T93@69541|Desulfuromonadales	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6620756_2	1340493.JNIF01000003_gene3330	1.651e-81	273.0	COG3865@1|root,COG3865@2|Bacteria,3Y4UB@57723|Acidobacteria	57723|Acidobacteria	H	3-demethylubiquinone-9 3-methyltransferase	-	-	2.1.1.222,2.1.1.64	ko:K00568	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04988,R05614,R08769,R08781	RC00003,RC00392,RC01895	ko00000,ko00001,ko00002,ko01000	-	-	-	3-dmu-9_3-mt
DYD3_k127_6620756_12	309801.trd_1960	2.294e-31	136.0	COG1376@1|root,COG5479@1|root,COG1376@2|Bacteria,COG5479@2|Bacteria,2G6ZY@200795|Chloroflexi,27XVB@189775|Thermomicrobia	189775|Thermomicrobia	M	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
DYD3_k127_6620756_23	1687.BCOR_0853	4.36e-09	65.0	2DWZI@1|root,342NZ@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6620756_5	493475.GARC_2376	6.774e-58	213.0	COG3187@1|root,COG3187@2|Bacteria	2|Bacteria	O	response to heat	-	-	-	ko:K03668,ko:K03929	-	-	-	-	ko00000,ko01000	-	CE10	-	META
DYD3_k127_6620756_18	1163407.UU7_05087	3.969e-17	86.0	COG4430@1|root,COG4430@2|Bacteria,1RGC9@1224|Proteobacteria,1S3G2@1236|Gammaproteobacteria,1X689@135614|Xanthomonadales	135614|Xanthomonadales	S	Bacteriocin-protection, YdeI or OmpD-Associated	-	-	-	-	-	-	-	-	-	-	-	-	DUF1905,OmdA
DYD3_k127_6620756_6	1123229.AUBC01000015_gene4697	5.774e-55	199.0	COG2865@1|root,COG2865@2|Bacteria,1RDDZ@1224|Proteobacteria,2U7CD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6620756_13	316274.Haur_0467	1.317e-26	114.0	COG2259@1|root,COG2259@2|Bacteria,2G90H@200795|Chloroflexi,377RB@32061|Chloroflexia	32061|Chloroflexia	S	PFAM DoxX family protein	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD3_k127_6620756_20	1227360.C176_07162	1.427e-11	75.0	COG2866@1|root,COG2866@2|Bacteria,1TP3K@1239|Firmicutes,4HAHN@91061|Bacilli,26DC4@186818|Planococcaceae	91061|Bacilli	E	Zinc carboxypeptidase	-	-	3.4.19.11	ko:K01308	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M14
DYD3_k127_6620756_17	1078085.HMPREF1210_01575	1.82e-18	96.0	COG2866@1|root,COG2866@2|Bacteria,1TP3K@1239|Firmicutes,4HAHN@91061|Bacilli,26DC4@186818|Planococcaceae	91061|Bacilli	E	Zinc carboxypeptidase	-	-	3.4.19.11	ko:K01308	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M14
DYD3_k127_6620756_8	1449065.JMLL01000010_gene555	3.13e-52	190.0	29CWT@1|root,2ZZUX@2|Bacteria,1REF2@1224|Proteobacteria,2U7K7@28211|Alphaproteobacteria,43J2Y@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	UPF0314 protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2585
DYD3_k127_6620756_9	1086011.HJ01_03564	1.108e-43	163.0	COG1051@1|root,COG1051@2|Bacteria	2|Bacteria	F	GDP-mannose mannosyl hydrolase activity	rppH_2	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
DYD3_k127_6620756_21	1185653.A1A1_08344	2.262e-11	70.0	COG0671@1|root,COG0671@2|Bacteria,1VF2U@1239|Firmicutes,4HNXR@91061|Bacilli,26FXJ@186818|Planococcaceae	91061|Bacilli	I	Acid phosphatase homologues	pap2c	-	3.6.1.27	ko:K19302	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	PAP2
DYD3_k127_6620756_28	1161413.HMPREF1510_1369	0.0006466	48.0	COG0457@1|root,COG0457@2|Bacteria,1VBQ3@1239|Firmicutes,4HUU9@91061|Bacilli	91061|Bacilli	S	Peptidase_C39 like family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C39_2
DYD3_k127_6620756_14	42256.RradSPS_1986	1.07e-20	97.0	COG1051@1|root,COG1051@2|Bacteria	2|Bacteria	F	GDP-mannose mannosyl hydrolase activity	-	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
DYD3_k127_6620756_0	247490.KSU1_D0586	2.25e-203	663.0	COG0474@1|root,COG0474@2|Bacteria,2IXV7@203682|Planctomycetes	203682|Planctomycetes	P	TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.2	ko:K01531	-	-	-	-	ko00000,ko01000	3.A.3.4	-	-	Cation_ATPase,Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3,SBP_bac_1
DYD3_k127_6620756_4	1121918.ARWE01000001_gene393	3.253e-78	270.0	COG0350@1|root,COG2207@1|root,COG0350@2|Bacteria,COG2207@2|Bacteria,1N2YQ@1224|Proteobacteria,42MQN@68525|delta/epsilon subdivisions,2WRJ0@28221|Deltaproteobacteria	28221|Deltaproteobacteria	K	6-O-methylguanine DNA methyltransferase, DNA binding domain	-	-	2.1.1.63	ko:K10778	-	-	-	-	ko00000,ko01000,ko03000,ko03400	-	-	-	DNA_binding_1,HTH_18,Methyltransf_1N
DYD3_k127_6620756_10	314254.OA2633_01846	2.747e-39	160.0	COG0628@1|root,COG0628@2|Bacteria,1MVX7@1224|Proteobacteria,2TVGG@28211|Alphaproteobacteria,43ZAE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Pfam:UPF0118	-	-	-	-	-	-	-	-	-	-	-	-	AI-2E_transport
DYD3_k127_6620756_15	493475.GARC_2376	1.675e-20	99.0	COG3187@1|root,COG3187@2|Bacteria	2|Bacteria	O	response to heat	-	-	-	ko:K03668,ko:K03929	-	-	-	-	ko00000,ko01000	-	CE10	-	META
DYD3_k127_6620756_7	1280668.ATVT01000011_gene3291	5.345e-54	208.0	COG0488@1|root,COG0488@2|Bacteria,1TPAX@1239|Firmicutes,247U6@186801|Clostridia,4BXBZ@830|Butyrivibrio	186801|Clostridia	S	ABC transporter	yfmM	-	-	ko:K06158	-	-	-	-	ko00000,ko03012	-	-	-	ABC_tran,ABC_tran_Xtn
DYD3_k127_6620756_1	700598.Niako_0978	2.538e-122	403.0	COG3266@1|root,COG3266@2|Bacteria,4NFRK@976|Bacteroidetes,1IPA7@117747|Sphingobacteriia	976|Bacteroidetes	S	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6620756_19	1123367.C666_14960	1.462e-13	78.0	COG1595@1|root,COG1595@2|Bacteria,1N6SV@1224|Proteobacteria,2VVB6@28216|Betaproteobacteria,2KX5P@206389|Rhodocyclales	206389|Rhodocyclales	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_6620756_27	1122609.AUGT01000009_gene3020	0.0004649	52.0	COG3170@1|root,COG3170@2|Bacteria,2GJWK@201174|Actinobacteria,4DRNY@85009|Propionibacteriales	201174|Actinobacteria	NU	Tfp pilus assembly protein FimV	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6620756_11	1033740.CAEW01000016_gene2833	1.517e-36	151.0	COG1559@1|root,COG1559@2|Bacteria,1TS48@1239|Firmicutes,4HAUV@91061|Bacilli,26E24@186818|Planococcaceae	91061|Bacilli	S	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	mltG	-	-	ko:K07082	-	-	-	-	ko00000	-	-	-	YceG
DYD3_k127_6645123_1	399795.CtesDRAFT_PD4239	1.497e-74	263.0	28KTF@1|root,2ZAAJ@2|Bacteria,1R9UB@1224|Proteobacteria,2VIAI@28216|Betaproteobacteria,4AGWC@80864|Comamonadaceae	28216|Betaproteobacteria	S	Phage replication protein CRI	-	-	-	-	-	-	-	-	-	-	-	-	Phage_CRI
DYD3_k127_6645123_3	925775.XVE_1918	5.305e-06	53.0	COG2944@1|root,COG2944@2|Bacteria,1NM4T@1224|Proteobacteria	1224|Proteobacteria	K	Phage protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF3653,HTH_3,HTH_31
DYD3_k127_6645123_4	76869.PputGB1_1182	0.0008282	42.0	2EMCZ@1|root,33F1W@2|Bacteria,1NH7S@1224|Proteobacteria,1SHJK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Excisionase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6645123_0	153948.NAL212_1430	4.785e-103	347.0	COG0582@1|root,COG0582@2|Bacteria,1MVZB@1224|Proteobacteria,2WADC@28216|Betaproteobacteria,373TF@32003|Nitrosomonadales	28216|Betaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	ko:K14059	-	-	-	-	ko00000	-	-	-	Arm-DNA-bind_2,Phage_int_SAM_3,Phage_integrase
DYD3_k127_6660943_0	396588.Tgr7_3183	2.531e-49	180.0	COG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,1RMMQ@1236|Gammaproteobacteria,1WW2Y@135613|Chromatiales	135613|Chromatiales	L	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)	recG	-	3.6.4.12	ko:K03655	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C,RecG_wedge
DYD3_k127_6660943_1	1278073.MYSTI_05969	0.0003244	48.0	2EGK3@1|root,33AC8@2|Bacteria,1NP1C@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6702619_0	580340.Tlie_1859	4.554e-52	188.0	COG0281@1|root,COG0281@2|Bacteria,3T9QC@508458|Synergistetes	508458|Synergistetes	C	Malic enzyme, NAD binding domain	-	-	1.1.1.38	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	-	R00214	RC00105	ko00000,ko00001,ko01000	-	-	-	Malic_M,malic
DYD3_k127_6702619_1	937777.Deipe_3189	2.191e-11	70.0	COG1051@1|root,COG1051@2|Bacteria,1WJZA@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	F	Belongs to the Nudix hydrolase family	-	-	3.6.1.61	ko:K18445	ko00230,map00230	-	R00184	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX
DYD3_k127_6719083_1	1123405.AUMM01000021_gene2969	2.307e-174	570.0	COG0272@1|root,COG0272@2|Bacteria,1TPQ3@1239|Firmicutes,4HA1D@91061|Bacilli,26NE5@186821|Sporolactobacillaceae	91061|Bacilli	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	ligA	GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5
DYD3_k127_6719083_28	1501230.ET33_07380	4.411e-07	55.0	COG0721@1|root,COG0721@2|Bacteria,1VEK3@1239|Firmicutes,4HNNA@91061|Bacilli,26ZAP@186822|Paenibacillaceae	91061|Bacilli	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatC	-	6.3.5.6,6.3.5.7	ko:K02435	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Glu-tRNAGln
DYD3_k127_6719083_3	204669.Acid345_0501	1.001e-131	435.0	COG0154@1|root,COG0154@2|Bacteria,3Y2PE@57723|Acidobacteria,2JIE0@204432|Acidobacteriia	204432|Acidobacteriia	J	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	gatA	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
DYD3_k127_6719083_22	66377.JOBH01000013_gene1855	1.594e-17	93.0	COG3415@1|root,COG3415@2|Bacteria,2HK0D@201174|Actinobacteria	201174|Actinobacteria	L	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23,Terminase_5
DYD3_k127_6719083_13	1033810.HLPCO_001691	1.818e-46	175.0	COG1266@1|root,COG1266@2|Bacteria	2|Bacteria	V	CAAX protease self-immunity	-	-	-	ko:K07052	-	-	-	-	ko00000	-	-	-	Abi
DYD3_k127_6719083_26	553385.JEMF01000001_gene550	4.727e-10	63.0	COG0640@1|root,COG0640@2|Bacteria,1N72Q@1224|Proteobacteria,1SCH5@1236|Gammaproteobacteria,1XM77@135619|Oceanospirillales	135619|Oceanospirillales	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	ko:K22042	-	-	-	-	ko00000,ko03000	-	-	-	HTH_5
DYD3_k127_6719083_17	886293.Sinac_0437	8.961e-32	130.0	COG0607@1|root,COG0607@2|Bacteria,2IZ80@203682|Planctomycetes	203682|Planctomycetes	P	SMART Rhodanese domain protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2892,Rhodanese
DYD3_k127_6719083_4	1304275.C41B8_04391	1.413e-118	392.0	COG0491@1|root,COG0491@2|Bacteria,1MURA@1224|Proteobacteria,1RN27@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	COG0491 Zn-dependent hydrolases, including glyoxylases	blh	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6719083_20	472175.EL18_01345	2.678e-22	104.0	2CCI4@1|root,30BPJ@2|Bacteria,1RE42@1224|Proteobacteria,2U92A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6719083_15	658187.LDG_7293	4.15e-40	154.0	COG3544@1|root,COG3544@2|Bacteria,1PVVM@1224|Proteobacteria,1T8BB@1236|Gammaproteobacteria,1JG4K@118969|Legionellales	118969|Legionellales	S	Domain of unknown function (DUF305)	-	-	-	-	-	-	-	-	-	-	-	-	DUF305
DYD3_k127_6719083_24	1173264.KI913949_gene3874	4.565e-14	78.0	COG3544@1|root,COG3544@2|Bacteria,1G4QX@1117|Cyanobacteria,1H955@1150|Oscillatoriales	1117|Cyanobacteria	S	Domain of unknown function (DUF305)	-	-	-	-	-	-	-	-	-	-	-	-	DUF305
DYD3_k127_6719083_30	1237500.ANBA01000018_gene3748	7.684e-05	52.0	COG0259@1|root,COG0259@2|Bacteria,2IMU5@201174|Actinobacteria	201174|Actinobacteria	H	Pyridoxamine 5'-phosphate oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Putative_PNPOx
DYD3_k127_6719083_11	1437425.CSEC_2022	1.614e-50	185.0	COG0662@1|root,COG0662@2|Bacteria	2|Bacteria	G	Cupin 2, conserved barrel domain protein	yrkC	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_6719083_6	1089544.KB912942_gene1307	1.182e-87	296.0	COG1028@1|root,COG1028@2|Bacteria,2GIX2@201174|Actinobacteria,4DXV2@85010|Pseudonocardiales	201174|Actinobacteria	IQ	PFAM Short-chain dehydrogenase reductase SDR	-	-	1.1.1.100,1.1.1.304,1.1.1.76	ko:K00059,ko:K03366	ko00061,ko00333,ko00650,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00650,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R02855,R02946,R03707,R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R09078,R10116,R10120,R10505,R11671	RC00029,RC00117,RC00205,RC00525	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_6719083_16	562743.JH976434_gene2007	2.464e-37	154.0	COG1388@1|root,COG3858@1|root,COG1388@2|Bacteria,COG3858@2|Bacteria,1TQK2@1239|Firmicutes,4HBJC@91061|Bacilli	91061|Bacilli	M	glycoside hydrolase, family	yaaH	-	-	ko:K06306	-	-	-	-	ko00000	-	-	-	Glyco_hydro_18,LysM
DYD3_k127_6719083_12	1448860.BBJO01000012_gene952	3.593e-47	180.0	COG1208@1|root,arCOG00666@2157|Archaea,2XT8U@28890|Euryarchaeota,23S60@183963|Halobacteria	183963|Halobacteria	M	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon)	-	-	2.3.1.157,2.7.7.23	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	M00362	R00416,R05332	RC00002,RC00004,RC00166	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,NTP_transferase
DYD3_k127_6719083_29	1211777.BN77_2372	2.191e-05	47.0	2EJ6D@1|root,33CXK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6719083_25	929712.KI912613_gene2826	3.464e-12	70.0	COG1733@1|root,COG1733@2|Bacteria,2IM83@201174|Actinobacteria,4CQEM@84995|Rubrobacteria	84995|Rubrobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_6719083_14	1293048.CBMB010000010_gene3417	2.577e-43	165.0	arCOG00346@1|root,arCOG00346@2157|Archaea,2XU0A@28890|Euryarchaeota,23V08@183963|Halobacteria	183963|Halobacteria	S	LUD domain	-	-	-	-	-	-	-	-	-	-	-	-	LUD_dom
DYD3_k127_6719083_0	945713.IALB_2071	4.178e-203	648.0	COG0449@1|root,COG0449@2|Bacteria	2|Bacteria	M	glutamine-fructose-6-phosphate transaminase (isomerizing) activity	glmS	GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.6.1.16	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	-	R00768	RC00010,RC00163,RC02752	ko00000,ko00001,ko01000,ko01002	-	-	iAF987.Gmet_1487	GATase_6,SIS
DYD3_k127_6719083_9	1321782.HMPREF1986_02618	5.921e-67	240.0	COG1186@1|root,COG1186@2|Bacteria,1TPSB@1239|Firmicutes,247KU@186801|Clostridia,2PRHH@265975|Oribacterium	186801|Clostridia	J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA	prfB	-	-	ko:K02836	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD3_k127_6719083_7	340099.Teth39_0563	1.537e-70	245.0	COG2884@1|root,COG2884@2|Bacteria,1TP58@1239|Firmicutes,248HW@186801|Clostridia,42EW3@68295|Thermoanaerobacterales	186801|Clostridia	D	TIGRFAM Cell division ATP-binding protein FtsE	ftsE	-	-	ko:K09812	ko02010,map02010	M00256	-	-	ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140	-	-	ABC_tran
DYD3_k127_6719083_18	1121866.AUGK01000013_gene1906	1.93e-30	132.0	COG2177@1|root,COG2177@2|Bacteria,2GJMA@201174|Actinobacteria,4CU8U@84998|Coriobacteriia	84998|Coriobacteriia	D	Part of the ABC transporter FtsEX involved in cellular division	-	-	-	ko:K09811	ko02010,map02010	M00256	-	-	ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140	-	-	FtsX
DYD3_k127_6719083_2	330779.Saci_0801	7.422e-155	506.0	COG0504@1|root,arCOG00063@2157|Archaea,2XPKS@28889|Crenarchaeota	28889|Crenarchaeota	F	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates	pyrG	-	6.3.4.2	ko:K01937	ko00240,ko01100,map00240,map01100	M00052	R00571,R00573	RC00010,RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_synth_N,GATase
DYD3_k127_6719083_27	1121946.AUAX01000005_gene5145	1.838e-08	65.0	2C454@1|root,3440S@2|Bacteria,2GSV4@201174|Actinobacteria,4DG4S@85008|Micromonosporales	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6719083_5	1121890.AUDO01000015_gene2987	1.17e-95	322.0	28J3D@1|root,2Z8ZM@2|Bacteria,4NRHV@976|Bacteroidetes,1I8ES@117743|Flavobacteriia,2NZB7@237|Flavobacterium	976|Bacteroidetes	S	Protein of unknown function (DUF3644)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3644
DYD3_k127_6719083_8	760142.Hipma_0827	8.037e-69	251.0	COG1961@1|root,COG1961@2|Bacteria	2|Bacteria	L	recombinase activity	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_6719083_10	240292.Ava_3254	3.358e-52	197.0	COG3344@1|root,COG3344@2|Bacteria,1G1DZ@1117|Cyanobacteria,1HP3Q@1161|Nostocales	1117|Cyanobacteria	L	DNA polymerase	-	-	2.7.7.49	ko:K00986	-	-	-	-	ko00000,ko01000	-	-	-	RVT_1
DYD3_k127_6719083_21	1131462.DCF50_p1251	4.581e-22	108.0	28K9Z@1|root,2Z9XF@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6719083_23	1047013.AQSP01000118_gene1245	2.643e-14	75.0	COG1396@1|root,COG1396@2|Bacteria	2|Bacteria	K	sequence-specific DNA binding	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31,Peptidase_M78,UPF0175
DYD3_k127_6719083_19	754027.HMPREF9554_01972	2.418e-23	104.0	COG4741@1|root,COG4741@2|Bacteria,2J8ES@203691|Spirochaetes	203691|Spirochaetes	F	COGs COG4741 secreted endonuclease distantly related to Holliday junction resolvase	-	-	-	-	-	-	-	-	-	-	-	-	Endonuc_Holl
DYD3_k127_6724592_1	1292034.OR37_03601	1.632e-101	336.0	COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,2TS28@28211|Alphaproteobacteria,2KI9X@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the glycosyl hydrolase 3 family	-	-	3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	-	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000	-	GH3	-	Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C
DYD3_k127_6724592_2	298386.PBPRA1650	4.77e-20	99.0	2E8Z3@1|root,3338P@2|Bacteria,1NPNK@1224|Proteobacteria,1SSXQ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6724592_0	317025.Tcr_0835	0.0	2618.0	COG0470@1|root,COG0470@2|Bacteria,1R7WK@1224|Proteobacteria,1RW7A@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	DNA polymerase III	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6724592_3	1323663.AROI01000009_gene3504	6.051e-15	78.0	COG3127@1|root,COG3127@2|Bacteria,1MU9R@1224|Proteobacteria,1RM8Y@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component	ybbP	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX
DYD3_k127_6740472_0	1499967.BAYZ01000087_gene5145	2.679e-134	437.0	COG3385@1|root,COG3385@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5,DDE_Tnp_1
DYD3_k127_6749877_1	635013.TherJR_1100	0.0006389	51.0	COG0189@1|root,COG0189@2|Bacteria,1TRSM@1239|Firmicutes,24VCB@186801|Clostridia	186801|Clostridia	HJ	Phage phiEco32-like COOH.NH2 ligase-type 2	-	-	-	-	-	-	-	-	-	-	-	-	COOH-NH2_lig
DYD3_k127_6749877_0	637390.AFOH01000013_gene719	4.721e-08	63.0	COG0189@1|root,COG0189@2|Bacteria,1MX62@1224|Proteobacteria,1RM8B@1236|Gammaproteobacteria,2NCAW@225057|Acidithiobacillales	225057|Acidithiobacillales	HJ	Belongs to the RimK family	-	-	-	ko:K05844	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	RimK
DYD3_k127_6756776_3	1120958.AULD01000014_gene872	7.518e-21	97.0	COG0254@1|root,COG0254@2|Bacteria,2IQ4I@201174|Actinobacteria,4FPKT@85023|Microbacteriaceae	201174|Actinobacteria	J	50S ribosomal protein L31 type B	rpmE2	-	-	ko:K02909	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L31
DYD3_k127_6756776_0	552811.Dehly_0966	9.904e-71	250.0	COG0216@1|root,COG0216@2|Bacteria,2G5UD@200795|Chloroflexi,34CMR@301297|Dehalococcoidia	301297|Dehalococcoidia	J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA	prfA	-	-	ko:K02835	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD3_k127_6756776_2	1278306.KB906934_gene746	2.645e-37	150.0	COG0052@1|root,COG0052@2|Bacteria,3795U@32066|Fusobacteria	32066|Fusobacteria	J	Belongs to the universal ribosomal protein uS2 family	rpsB	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02967	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S2
DYD3_k127_6756776_1	390874.Tpet_1187	2.228e-44	168.0	COG0264@1|root,COG0264@2|Bacteria,2GCGY@200918|Thermotogae	200918|Thermotogae	J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome	tsf	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	ko:K02357	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EF_TS
DYD3_k127_676104_0	391615.ABSJ01000027_gene186	4.34e-98	331.0	COG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria,1S1T4@1236|Gammaproteobacteria	1236|Gammaproteobacteria	KLT	Protein tyrosine kinase	-	-	-	-	-	-	-	-	-	-	-	-	Pkinase,cNMP_binding
DYD3_k127_6780422_1	1122164.JHWF01000032_gene2236	3.559e-113	386.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,1RMUR@1236|Gammaproteobacteria,1JCHU@118969|Legionellales	118969|Legionellales	V	to multidrug resistance ABC transporter ATP-binding protein	-	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_6780422_17	653733.Selin_1823	2.395e-05	55.0	COG1073@1|root,COG1073@2|Bacteria	2|Bacteria	S	thiolester hydrolase activity	MA20_24420	-	-	ko:K06889,ko:K07000	-	-	-	-	ko00000	-	-	-	Abhydrolase_6,Hydrolase_4,UPF0227
DYD3_k127_6780422_15	1122176.KB903531_gene3163	5.042e-09	64.0	COG4278@1|root,COG4278@2|Bacteria,4P6X7@976|Bacteroidetes	976|Bacteroidetes	H	phenylacetate-CoA ligase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780422_12	714961.BFZC1_14288	2.82e-22	103.0	2CCGS@1|root,32UCE@2|Bacteria,1V9YN@1239|Firmicutes,4HKU7@91061|Bacilli,3IZHR@400634|Lysinibacillus	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780422_9	485913.Krac_6904	3.24e-30	128.0	COG2890@1|root,COG2890@2|Bacteria	2|Bacteria	J	protein-(glutamine-N5) methyltransferase activity	prmC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564	2.1.1.297,2.1.1.4	ko:K00543,ko:K02493,ko:K15256	ko00380,ko01100,map00380,map01100	M00037	R03130,R04905,R10806	RC00003,RC00392,RC03279	ko00000,ko00001,ko00002,ko01000,ko03012,ko03016	-	-	-	MTS,Methyltransf_31
DYD3_k127_6780422_6	1030157.AFMP01000002_gene2155	4.217e-55	199.0	COG2940@1|root,COG2940@2|Bacteria,1Q9DE@1224|Proteobacteria,2VDKT@28211|Alphaproteobacteria,2K32C@204457|Sphingomonadales	204457|Sphingomonadales	S	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	-	-	-	ko:K07117	-	-	-	-	ko00000	-	-	-	SET
DYD3_k127_6780422_7	1030157.AFMP01000002_gene2155	6.699e-54	195.0	COG2940@1|root,COG2940@2|Bacteria,1Q9DE@1224|Proteobacteria,2VDKT@28211|Alphaproteobacteria,2K32C@204457|Sphingomonadales	204457|Sphingomonadales	S	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	-	-	-	ko:K07117	-	-	-	-	ko00000	-	-	-	SET
DYD3_k127_6780422_8	1157943.KB892705_gene706	3.857e-43	177.0	COG0642@1|root,COG2205@2|Bacteria,2GIV9@201174|Actinobacteria,235P5@1762|Mycobacteriaceae	201174|Actinobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
DYD3_k127_6780422_2	1396418.BATQ01000046_gene6113	5.802e-109	366.0	COG0162@1|root,COG0162@2|Bacteria,46UVG@74201|Verrucomicrobia,2ITSI@203494|Verrucomicrobiae	203494|Verrucomicrobiae	J	tRNA synthetases class I (W and Y)	-	-	-	-	-	-	-	-	-	-	-	-	S4,tRNA-synt_1b
DYD3_k127_6780422_16	1380394.JADL01000022_gene9	2.576e-06	55.0	29837@1|root,2ZV96@2|Bacteria,1NBPT@1224|Proteobacteria,2UJ54@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780422_4	1321779.HMPREF1984_02189	1.069e-84	293.0	COG0180@1|root,COG0180@2|Bacteria,37854@32066|Fusobacteria	32066|Fusobacteria	J	Psort location Cytoplasmic, score	trpS	-	6.1.1.2	ko:K01867	ko00970,map00970	M00359,M00360	R03664	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1b
DYD3_k127_6780422_0	1410653.JHVC01000007_gene552	4.442e-117	394.0	COG0017@1|root,COG0017@2|Bacteria,1TP38@1239|Firmicutes,248XN@186801|Clostridia,36FC0@31979|Clostridiaceae	186801|Clostridia	J	L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp	aspS	-	6.1.1.12,6.1.1.23	ko:K01876,ko:K09759	ko00970,map00970	M00359,M00360	R03647,R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	tRNA-synt_2,tRNA_anti-codon
DYD3_k127_6780422_3	748247.AZKH_1645	2.068e-93	323.0	COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,2VH79@28216|Betaproteobacteria,2KU6P@206389|Rhodocyclales	206389|Rhodocyclales	E	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	pepA	-	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17,Peptidase_M17_N
DYD3_k127_6780422_10	644966.Tmar_1133	1.576e-24	113.0	COG1354@1|root,COG1354@2|Bacteria,1TRW3@1239|Firmicutes,249VW@186801|Clostridia,3WCN2@538999|Clostridiales incertae sedis	186801|Clostridia	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves	scpA	-	-	ko:K05896	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpA
DYD3_k127_6780422_11	208439.AJAP_00230	1.106e-23	107.0	COG0645@1|root,COG0645@2|Bacteria,2ISQX@201174|Actinobacteria,4E5VX@85010|Pseudonocardiales	201174|Actinobacteria	S	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_33
DYD3_k127_6780422_14	401053.AciPR4_0616	1.083e-14	81.0	COG0563@1|root,COG0563@2|Bacteria	2|Bacteria	F	adenylate kinase activity	adk	-	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	AAA_18,ADK,ADK_lid
DYD3_k127_6780422_5	1123248.KB893386_gene1947	1.371e-70	244.0	COG1434@1|root,COG1434@2|Bacteria,4NI3S@976|Bacteroidetes	976|Bacteroidetes	S	DUF218 domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF218
DYD3_k127_6780747_12	1227266.HMPREF1551_00540	6.704e-07	57.0	2C6KN@1|root,33CID@2|Bacteria,4NW71@976|Bacteroidetes,1IAVI@117743|Flavobacteriia,1ES6R@1016|Capnocytophaga	976|Bacteroidetes	S	VRR_NUC	-	-	-	-	-	-	-	-	-	-	-	-	VRR_NUC
DYD3_k127_6780747_9	1288494.EBAPG3_1660	3.898e-10	68.0	COG3728@1|root,COG3728@2|Bacteria,1RG2M@1224|Proteobacteria,2VXI2@28216|Betaproteobacteria	28216|Betaproteobacteria	L	Terminase small subunit	-	-	-	ko:K07474	-	-	-	-	ko00000	-	-	-	Terminase_2
DYD3_k127_6780747_15	1005994.GTGU_04675	4.357e-05	54.0	2DPEC@1|root,331RJ@2|Bacteria,1N7D6@1224|Proteobacteria,1SI59@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_0	1461694.ATO9_04040	4.329e-104	353.0	COG5323@1|root,COG5323@2|Bacteria,1MW8S@1224|Proteobacteria,2TREI@28211|Alphaproteobacteria,2PCZV@252301|Oceanicola	28211|Alphaproteobacteria	S	Terminase RNaseH-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_3,Terminase_6,Terminase_6C
DYD3_k127_6780747_13	357276.EL88_08405	2.125e-06	55.0	2E86X@1|root,332K5@2|Bacteria,4NVC2@976|Bacteroidetes,2FUH4@200643|Bacteroidia,4ASA7@815|Bacteroidaceae	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_10	521097.Coch_0900	1.24e-07	59.0	2C091@1|root,32UF3@2|Bacteria,4NSYS@976|Bacteroidetes	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_5	1121895.Q765_15015	9.236e-31	140.0	2FGHF@1|root,348DC@2|Bacteria,4PD10@976|Bacteroidetes,1ICVX@117743|Flavobacteriia,2NVDP@237|Flavobacterium	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_6	357276.EL88_08385	1.86e-20	108.0	COG1511@1|root,COG1511@2|Bacteria,4PMG4@976|Bacteroidetes	976|Bacteroidetes	S	domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_7	1384484.AEQU_1181	8.155e-16	90.0	COG0740@1|root,COG0740@2|Bacteria,2HVMB@201174|Actinobacteria,4CX2R@84998|Coriobacteriia	84998|Coriobacteriia	OU	Clp protease	-	-	-	-	-	-	-	-	-	-	-	-	CLP_protease
DYD3_k127_6780747_2	1121898.Q766_16045	7.896e-45	176.0	28NGR@1|root,2ZBIR@2|Bacteria,4NK19@976|Bacteroidetes,1IAYI@117743|Flavobacteriia,2NVM6@237|Flavobacterium	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_14	762984.HMPREF9445_00182	8.583e-06	56.0	2EBZ7@1|root,335YH@2|Bacteria,4NWCE@976|Bacteroidetes,2FTW3@200643|Bacteroidia,4ARZU@815|Bacteroidaceae	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_1	1122931.AUAE01000005_gene3253	3.695e-52	201.0	28KN5@1|root,2ZA6E@2|Bacteria,4NIXS@976|Bacteroidetes,2FPAC@200643|Bacteroidia,22ZE6@171551|Porphyromonadaceae	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6780747_11	926549.KI421517_gene2525	3.332e-07	62.0	COG2931@1|root,COG2931@2|Bacteria,4PN0W@976|Bacteroidetes,47RR2@768503|Cytophagia	976|Bacteroidetes	Q	Collagen triple helix repeat (20 copies)	-	-	-	-	-	-	-	-	-	-	-	-	Collagen
DYD3_k127_6780747_8	491205.JARQ01000001_gene1215	2.709e-11	77.0	2DR7D@1|root,33AJ0@2|Bacteria,4P81U@976|Bacteroidetes,1IB4F@117743|Flavobacteriia,3ZSEY@59732|Chryseobacterium	976|Bacteroidetes	S	Pectate lyase superfamily protein	-	-	-	-	-	-	-	-	-	-	-	-	Pectate_lyase_3
DYD3_k127_6780747_4	1270196.JCKI01000008_gene1532	1.628e-39	154.0	COG3926@1|root,COG3926@2|Bacteria,4NRDK@976|Bacteroidetes	976|Bacteroidetes	S	Predicted Peptidoglycan domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_108,PG_binding_3
DYD3_k127_6780747_3	1265845.PWEIH_00500	2.677e-44	175.0	28MC2@1|root,2ZAQD@2|Bacteria,1VSEU@1239|Firmicutes,4HT1S@91061|Bacilli	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6794086_1	1234664.AMRO01000077_gene3423	8.992e-74	254.0	COG0281@1|root,COG0281@2|Bacteria,1TPJ3@1239|Firmicutes,4H9WR@91061|Bacilli,1WF98@129337|Geobacillus	91061|Bacilli	C	Malic enzyme, NAD binding domain	me	-	1.1.1.38	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	-	R00214	RC00105	ko00000,ko00001,ko01000	-	-	-	Malic_M,malic
DYD3_k127_6794086_0	552811.Dehly_0937	8.477e-144	481.0	COG1200@1|root,COG1200@2|Bacteria,2G5YM@200795|Chloroflexi,34D01@301297|Dehalococcoidia	301297|Dehalococcoidia	L	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)	recG	-	3.6.4.12	ko:K03655	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C,RecG_wedge
DYD3_k127_6824592_22	497965.Cyan7822_5218	1.509e-23	105.0	COG1610@1|root,COG1610@2|Bacteria,1G607@1117|Cyanobacteria,3KI04@43988|Cyanothece	1117|Cyanobacteria	D	Yqey-like protein	-	-	-	ko:K09117	-	-	-	-	ko00000	-	-	-	YqeY
DYD3_k127_6824592_12	1047013.AQSP01000140_gene2513	6.514e-53	200.0	COG1322@1|root,COG1322@2|Bacteria,2NPXU@2323|unclassified Bacteria	2|Bacteria	S	RmuC family	rmuC	-	-	ko:K09760	-	-	-	-	ko00000	-	-	-	RmuC
DYD3_k127_6824592_21	638302.HMPREF0908_0083	5.111e-27	113.0	COG0261@1|root,COG0261@2|Bacteria,1V9YH@1239|Firmicutes,4H4VN@909932|Negativicutes	909932|Negativicutes	J	This protein binds to 23S rRNA in the presence of protein L20	rplU	-	-	ko:K02888	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L21p
DYD3_k127_6824592_18	1379270.AUXF01000005_gene387	6.061e-34	138.0	COG0353@1|root,COG0353@2|Bacteria,1ZTJX@142182|Gemmatimonadetes	142182|Gemmatimonadetes	L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO	recR	-	-	ko:K06187	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecR,Toprim_4
DYD3_k127_6824592_0	562970.Btus_3300	8.443e-132	434.0	COG0305@1|root,COG0305@2|Bacteria,1TPCT@1239|Firmicutes,4H9Y8@91061|Bacilli,277WV@186823|Alicyclobacillaceae	91061|Bacilli	L	Participates in initiation and elongation during chromosome replication	dnaB	GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB,DnaB_C
DYD3_k127_6824592_1	1291050.JAGE01000001_gene1471	1.692e-129	429.0	COG0215@1|root,COG0215@2|Bacteria,1TP9D@1239|Firmicutes,247KS@186801|Clostridia,3WHD2@541000|Ruminococcaceae	186801|Clostridia	J	Belongs to the class-I aminoacyl-tRNA synthetase family	cysS	-	6.1.1.16	ko:K01883	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_2,tRNA-synt_1e,tRNA-synt_1g
DYD3_k127_6824592_23	743718.Isova_1111	7.726e-23	109.0	COG0598@1|root,COG0598@2|Bacteria,2GKNZ@201174|Actinobacteria,4F494@85017|Promicromonosporaceae	201174|Actinobacteria	P	CorA-like Mg2+ transporter protein	corA	-	-	ko:K03284	-	-	-	-	ko00000,ko02000	1.A.35.1,1.A.35.3	-	-	CorA
DYD3_k127_6824592_8	1497679.EP56_04940	3.925e-65	239.0	COG0793@1|root,COG0793@2|Bacteria,1TPBI@1239|Firmicutes,4HAKE@91061|Bacilli,26J2D@186820|Listeriaceae	91061|Bacilli	M	Belongs to the peptidase S41A family	ctpA	GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016787,GO:0019538,GO:0023052,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ,PDZ_2,PG_binding_1,Peptidase_S41
DYD3_k127_6824592_24	1150474.JQJI01000003_gene4	3.052e-21	98.0	COG0359@1|root,COG0359@2|Bacteria,2GD71@200918|Thermotogae	200918|Thermotogae	J	Binds to the 23S rRNA	rplI	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02939	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L9_C,Ribosomal_L9_N
DYD3_k127_6824592_26	525904.Tter_0489	1.541e-20	93.0	COG0211@1|root,COG0211@2|Bacteria,2NPSU@2323|unclassified Bacteria	2|Bacteria	J	Belongs to the bacterial ribosomal protein bL27 family	rpmA	GO:0000027,GO:0001558,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0040008,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048518,GO:0050789,GO:0050794,GO:0051128,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090069,GO:0090070,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904	-	ko:K02899	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L27
DYD3_k127_6824592_30	485916.Dtox_3690	0.0003573	49.0	COG0103@1|root,COG2169@1|root,COG0103@2|Bacteria,COG2169@2|Bacteria,1VAS8@1239|Firmicutes,25E5F@186801|Clostridia,262TF@186807|Peptococcaceae	186801|Clostridia	J	PFAM copper amine oxidase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Cu_amine_oxidN1
DYD3_k127_6824592_15	745718.JADT01000019_gene1519	2.703e-45	171.0	COG0847@1|root,COG0847@2|Bacteria	2|Bacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	dnaQ	-	2.7.7.7	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	RNase_T
DYD3_k127_6824592_7	237368.SCABRO_03309	3.322e-66	234.0	COG1611@1|root,COG1611@2|Bacteria,2IZCH@203682|Planctomycetes	203682|Planctomycetes	NOU	Possible lysine decarboxylase	-	-	3.2.2.10	ko:K06966	ko00230,ko00240,map00230,map00240	-	R00182,R00510	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	Lysine_decarbox
DYD3_k127_6824592_14	266265.Bxe_A3103	5.463e-50	181.0	2E04N@1|root,32VT5@2|Bacteria,1N310@1224|Proteobacteria,2W2JF@28216|Betaproteobacteria,1K8RJ@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6824592_29	1348583.ATLH01000028_gene43	2.735e-05	50.0	COG4191@1|root,COG4191@2|Bacteria,4NSNP@976|Bacteroidetes,1I323@117743|Flavobacteriia,1F9EA@104264|Cellulophaga	976|Bacteroidetes	T	Protein of unknown function (DUF3467)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3467
DYD3_k127_6824592_27	858215.Thexy_0871	1.656e-20	105.0	COG4942@1|root,COG4942@2|Bacteria,1TQ5I@1239|Firmicutes,248ZG@186801|Clostridia,42FSF@68295|Thermoanaerobacterales	186801|Clostridia	D	PFAM Peptidase M23	-	-	-	ko:K21471	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Peptidase_M23
DYD3_k127_6824592_5	873517.HMPREF1977_0693	1.294e-104	356.0	COG0008@1|root,COG0008@2|Bacteria,4NEED@976|Bacteroidetes,1HXQH@117743|Flavobacteriia,1EQY2@1016|Capnocytophaga	976|Bacteroidetes	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_6824592_11	665571.STHERM_c05390	5.193e-57	213.0	COG0707@1|root,COG0707@2|Bacteria,2J5XF@203691|Spirochaetes	203691|Spirochaetes	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)	murG	-	2.4.1.227	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	-	R05032,R05662	RC00005,RC00049	ko00000,ko00001,ko01000,ko01011	-	GT28	-	Glyco_tran_28_C,Glyco_transf_28
DYD3_k127_6824592_25	856793.MICA_368	1.059e-20	95.0	COG5425@1|root,COG5425@2|Bacteria,1N08I@1224|Proteobacteria,2UBVR@28211|Alphaproteobacteria,4BQXH@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Usg-like family	usg	-	-	-	-	-	-	-	-	-	-	-	Usg
DYD3_k127_6824592_16	1382356.JQMP01000004_gene472	5.268e-40	165.0	COG0770@1|root,COG0770@2|Bacteria,2G5PN@200795|Chloroflexi,27XZI@189775|Thermomicrobia	189775|Thermomicrobia	M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein	murF	-	6.3.2.10	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	-	R04573,R04617	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_6824592_9	479434.Sthe_1996	7.381e-61	231.0	COG0768@1|root,COG0768@2|Bacteria,2G66C@200795|Chloroflexi,27Y3G@189775|Thermomicrobia	189775|Thermomicrobia	M	Penicillin-binding Protein dimerisation domain	-	-	3.4.16.4	ko:K03587	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011,ko03036	-	-	-	PBP_dimer,Transpeptidase
DYD3_k127_6824592_6	1089553.Tph_c12560	2.211e-67	240.0	COG0275@1|root,COG0275@2|Bacteria,1TNZV@1239|Firmicutes,248B5@186801|Clostridia,42EWY@68295|Thermoanaerobacterales	186801|Clostridia	J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	rsmH	-	2.1.1.199	ko:K03438	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltransf_5
DYD3_k127_6824592_19	1304875.JAFZ01000001_gene1927	9.727e-33	132.0	COG2001@1|root,COG2001@2|Bacteria,3TB6P@508458|Synergistetes	508458|Synergistetes	K	Belongs to the MraZ family	mraZ	-	-	ko:K03925	-	-	-	-	ko00000	-	-	-	MraZ
DYD3_k127_6824592_4	755178.Cyan10605_2161	1.35e-112	382.0	COG1384@1|root,COG1384@2|Bacteria,1G00G@1117|Cyanobacteria	1117|Cyanobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	lysS	-	6.1.1.6	ko:K04566	ko00970,map00970	M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1f
DYD3_k127_6824592_20	632335.Calkr_1524	2.465e-29	123.0	COG0782@1|root,COG0782@2|Bacteria,1V44S@1239|Firmicutes,24HP9@186801|Clostridia,42G8G@68295|Thermoanaerobacterales	186801|Clostridia	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	greA	-	-	ko:K03624	-	-	-	-	ko00000,ko03021	-	-	-	GreA_GreB,GreA_GreB_N
DYD3_k127_6824592_10	580340.Tlie_0623	8.469e-61	231.0	COG0768@1|root,COG0768@2|Bacteria,3TADZ@508458|Synergistetes	508458|Synergistetes	M	Penicillin-binding protein 2	mrdA	-	3.4.16.4	ko:K05515	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011	-	-	-	PBP_dimer,Transpeptidase
DYD3_k127_6824592_28	110663.KI911558_gene2095	1.253e-06	59.0	COG1792@1|root,COG1792@2|Bacteria,1G1VN@1117|Cyanobacteria,1GZIV@1129|Synechococcus	1117|Cyanobacteria	M	shape-determining protein	mreC	-	-	ko:K03570	-	-	-	-	ko00000,ko03036	9.B.157.1	-	-	MreC
DYD3_k127_6824592_3	477974.Daud_1466	1.56e-113	376.0	COG1077@1|root,COG1077@2|Bacteria,1TP51@1239|Firmicutes,247RG@186801|Clostridia,260KS@186807|Peptococcaceae	186801|Clostridia	D	TIGRFAM Cell shape determining protein MreB Mrl	mreB	-	-	ko:K03569	-	-	-	-	ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1	-	-	MreB_Mbl
DYD3_k127_6824592_2	1541960.KQ78_00792	5.12e-115	383.0	COG0442@1|root,COG0442@2|Bacteria,3WV4I@544448|Tenericutes	544448|Tenericutes	J	Anticodon binding domain	proS	-	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b
DYD3_k127_6824592_13	525904.Tter_1705	1.136e-52	199.0	COG0750@1|root,COG0750@2|Bacteria,2NP7C@2323|unclassified Bacteria	2|Bacteria	M	zinc metalloprotease	rseP	GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0040007,GO:0043170,GO:0043856,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0045152,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141	3.4.21.107	ko:K04771,ko:K11749,ko:K16922	ko01503,ko02020,ko02024,ko04112,map01503,map02020,map02024,map04112	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ,PDZ_2,Peptidase_M50
DYD3_k127_6824592_17	525903.Taci_0745	5.701e-36	143.0	COG0233@1|root,COG0233@2|Bacteria,3TATH@508458|Synergistetes	508458|Synergistetes	J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another	frr	-	-	ko:K02838	-	-	-	-	ko00000,ko03012	-	-	-	RRF
DYD3_k127_6859125_5	1401065.HMPREF2130_10960	1.32e-05	49.0	28PTM@1|root,2ZCEU@2|Bacteria,1R5DD@1224|Proteobacteria,2W259@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Family of unknown function (DUF5309)	-	-	-	-	-	-	-	-	-	-	-	-	DUF5309
DYD3_k127_6859125_6	596152.DesU5LDRAFT_1450	0.0001102	55.0	COG3170@1|root,COG3170@2|Bacteria,1N4R0@1224|Proteobacteria,42QKG@68525|delta/epsilon subdivisions,2WMF1@28221|Deltaproteobacteria,2MBE5@213115|Desulfovibrionales	28221|Deltaproteobacteria	NU	Tfp pilus assembly protein FimV	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6859125_1	189425.PGRAT_24105	5.145e-26	122.0	COG1783@1|root,COG1783@2|Bacteria,1VK0H@1239|Firmicutes,4HQ2H@91061|Bacilli,271UP@186822|Paenibacillaceae	91061|Bacilli	S	Terminase-like family	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6,Terminase_6C
DYD3_k127_6859125_3	1140001.I571_01726	3.301e-17	86.0	2EGZP@1|root,33ART@2|Bacteria,1VKPB@1239|Firmicutes,4HR69@91061|Bacilli,4B3PK@81852|Enterococcaceae	91061|Bacilli	S	YopX protein	-	-	-	-	-	-	-	-	-	-	-	-	YopX
DYD3_k127_6859125_0	234621.RER_24940	1.222e-28	121.0	COG2340@1|root,COG2340@2|Bacteria,2GM57@201174|Actinobacteria,4G5BP@85025|Nocardiaceae	201174|Actinobacteria	S	Cysteine-rich secretory protein family	-	-	-	-	-	-	-	-	-	-	-	-	CAP
DYD3_k127_6859125_2	1463881.KL591002_gene4594	5.306e-21	96.0	2AV32@1|root,31KT0@2|Bacteria,2IM6S@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6859125_4	519442.Huta_0240	6.117e-07	58.0	COG1403@1|root,arCOG03898@2157|Archaea,2XT60@28890|Euryarchaeota,23TBA@183963|Halobacteria	183963|Halobacteria	V	HNH nuclease	-	-	-	-	-	-	-	-	-	-	-	-	zf-C2H2_6
DYD3_k127_6888884_1	323261.Noc_1880	1.581e-10	64.0	2EKYG@1|root,33EMZ@2|Bacteria,1NJ4M@1224|Proteobacteria,1SH0U@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6888884_0	323261.Noc_1881	2.643e-11	64.0	COG2204@1|root,COG2204@2|Bacteria,1NH9G@1224|Proteobacteria,1RRF2@1236|Gammaproteobacteria,1X04Q@135613|Chromatiales	135613|Chromatiales	K	Sigma-54 interaction domain	-	-	-	-	-	-	-	-	-	-	-	-	Sigma54_activat
DYD3_k127_6921350_11	573370.DMR_25160	2.339e-07	57.0	COG5525@1|root,COG5525@2|Bacteria,1NE5I@1224|Proteobacteria,43EQH@68525|delta/epsilon subdivisions,2X1D8@28221|Deltaproteobacteria,2METK@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	Phage terminase large subunit (GpA)	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_GpA
DYD3_k127_6921350_7	1111732.AZOD01000009_gene1236	2.469e-12	73.0	2CXUI@1|root,32T2N@2|Bacteria,1N3JB@1224|Proteobacteria,1SBAK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	DNA-packaging protein gp3	-	-	-	-	-	-	-	-	-	-	-	-	GP3_package
DYD3_k127_6921350_10	1123405.AUMM01000060_gene1863	1.532e-07	61.0	2EWAE@1|root,33PP5@2|Bacteria,1VTAY@1239|Firmicutes,4HTB5@91061|Bacilli	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
DYD3_k127_6921350_13	760142.Hipma_1267	1.691e-06	53.0	COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,42U7E@68525|delta/epsilon subdivisions,2WPZP@28221|Deltaproteobacteria,2M7D8@213113|Desulfurellales	28221|Deltaproteobacteria	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	groS	GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
DYD3_k127_6921350_0	869210.Marky_0717	1.631e-89	314.0	COG0459@1|root,COG0459@2|Bacteria,1WIFZ@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD3_k127_6921350_8	67267.JNXT01000061_gene7403	6.57e-11	67.0	2BB3E@1|root,324JP@2|Bacteria,2H9G3@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6921350_12	1300345.LF41_2396	1.509e-06	57.0	COG3756@1|root,COG3756@2|Bacteria,1R95D@1224|Proteobacteria,1RQF3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1376)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1376
DYD3_k127_6921350_6	1121468.AUBR01000099_gene3088	7.269e-13	76.0	2C5J1@1|root,3067M@2|Bacteria,1V52W@1239|Firmicutes,24J2G@186801|Clostridia	186801|Clostridia	S	COG NOG12663 non supervised orthologous group	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6921350_14	1300345.LF41_2378	2.774e-06	52.0	2ADF5@1|root,31358@2|Bacteria,1QCUI@1224|Proteobacteria,1T8MP@1236|Gammaproteobacteria,1XAY4@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6921350_2	1210884.HG799466_gene12740	2.32e-17	87.0	2C9JF@1|root,32RPD@2|Bacteria	2|Bacteria	S	Erf family	-	-	-	-	-	-	-	-	-	-	-	-	ERF
DYD3_k127_6921350_3	323097.Nham_0308	4.507e-17	85.0	COG4570@1|root,COG4570@2|Bacteria	2|Bacteria	L	crossover junction endodeoxyribonuclease activity	rusA	GO:0000217,GO:0000400,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008821,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363	3.1.22.4	ko:K01160	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	RusA
DYD3_k127_6921350_4	208439.AJAP_27925	7.82e-17	89.0	COG0639@1|root,COG0639@2|Bacteria,2GMS4@201174|Actinobacteria,4E9IG@85010|Pseudonocardiales	201174|Actinobacteria	T	Calcineurin-like phosphoesterase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos,Metallophos_2
DYD3_k127_6921350_15	1304880.JAGB01000002_gene1913	2.039e-05	56.0	COG1388@1|root,COG3409@1|root,COG1388@2|Bacteria,COG3409@2|Bacteria,1UHY7@1239|Firmicutes,24FFK@186801|Clostridia	186801|Clostridia	M	Peptidoglycan-binding LysM	-	-	-	-	-	-	-	-	-	-	-	-	LysM
DYD3_k127_6921350_1	1449126.JQKL01000002_gene1685	7.622e-18	100.0	COG3170@1|root,COG3170@2|Bacteria,1UMRZ@1239|Firmicutes,24SRA@186801|Clostridia	186801|Clostridia	NU	Tfp pilus assembly protein FimV	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6921350_9	690850.Desaf_3489	9.66e-08	61.0	2ARNZ@1|root,31GZQ@2|Bacteria,1QAGN@1224|Proteobacteria,435KQ@68525|delta/epsilon subdivisions,2WZZ2@28221|Deltaproteobacteria,2M8YJ@213115|Desulfovibrionales	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6922849_4	1295642.H839_15913	2.027e-13	85.0	COG5280@1|root,COG5283@1|root,COG5280@2|Bacteria,COG5283@2|Bacteria,1UHQM@1239|Firmicutes,4ISY6@91061|Bacilli,1WHZ5@129337|Geobacillus	91061|Bacilli	S	Phage-related minor tail protein	-	-	-	-	-	-	-	-	-	-	-	-	PhageMin_Tail
DYD3_k127_6922849_0	1250232.JQNJ01000001_gene2887	5.083e-33	130.0	2DSMC@1|root,33GP4@2|Bacteria,4P61U@976|Bacteroidetes	976|Bacteroidetes	S	Domain of unknown function (DUF4326)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4326
DYD3_k127_6922849_1	1501230.ET33_26555	1.984e-26	111.0	COG1694@1|root,COG1694@2|Bacteria,1VG7F@1239|Firmicutes,4HWVH@91061|Bacilli,26ZEB@186822|Paenibacillaceae	91061|Bacilli	S	Mazg nucleotide pyrophosphohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	MazG
DYD3_k127_6922849_6	1033738.CAEP01000137_gene1516	6.108e-10	70.0	COG1467@1|root,COG1467@2|Bacteria,1VHYM@1239|Firmicutes,4HNRP@91061|Bacilli	91061|Bacilli	L	DNA primase activity	-	-	-	-	-	-	-	-	-	-	-	-	PriCT_1
DYD3_k127_6922849_5	436308.Nmar_0098	2.017e-10	69.0	arCOG10136@1|root,arCOG10136@2157|Archaea,41T5E@651137|Thaumarchaeota	651137|Thaumarchaeota	S	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)	-	-	-	ko:K05967	-	-	-	-	ko00000	-	-	-	NT5C
DYD3_k127_6922849_8	1463921.JODF01000008_gene5474	3.178e-06	56.0	COG0237@1|root,COG0237@2|Bacteria,2ISY6@201174|Actinobacteria	201174|Actinobacteria	H	dephospho-CoA kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6922849_3	71139.XP_010027623.1	3.646e-18	100.0	COG0417@1|root,KOG0969@2759|Eukaryota,37IAH@33090|Viridiplantae,3GDH4@35493|Streptophyta	35493|Streptophyta	L	DNA polymerase	-	GO:0000228,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576,GO:1902494,GO:1990234	2.7.7.7	ko:K02327	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166	M00262	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol_B,DNA_pol_B_exo1,zf-C4pol
DYD3_k127_6922849_7	448385.sce8204	1.254e-08	58.0	COG1061@1|root,COG1403@1|root,COG1061@2|Bacteria,COG1403@2|Bacteria	2|Bacteria	V	endonuclease activity	-	-	-	ko:K07451	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	HNH,HNH_5,Helicase_C,ResIII
DYD3_k127_6922849_9	272562.CA_C3442	9.169e-06	55.0	COG2176@1|root,COG2176@2|Bacteria,1TPAG@1239|Firmicutes,248YB@186801|Clostridia,36DEW@31979|Clostridiaceae	186801|Clostridia	L	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	polC	-	2.7.7.7	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_a_NI,DNA_pol3_a_NII,DNA_pol3_alpha,HHH_6,PHP,RNase_T,tRNA_anti-codon
DYD3_k127_6980339_1	1056820.KB900681_gene2859	1.882e-102	336.0	COG3385@1|root,COG3385@2|Bacteria,1PMXF@1224|Proteobacteria,1RMHK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	COG3385 FOG Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF4372
DYD3_k127_6980339_0	526227.Mesil_2572	1.046e-126	418.0	COG3328@1|root,COG3328@2|Bacteria,1WI20@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	L	COGs COG3328 Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	Transposase_mut
DYD3_k127_6988035_8	1260251.SPISAL_03055	2.856e-05	46.0	COG0458@1|root,COG0458@2|Bacteria,1MUDZ@1224|Proteobacteria,1RPIU@1236|Gammaproteobacteria,1WVW8@135613|Chromatiales	135613|Chromatiales	EF	Belongs to the CarB family	carB	-	6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000	-	-	-	CPSase_L_D2,CPSase_L_D3,MGS
DYD3_k127_6988035_4	1116472.MGMO_88c00370	1.765e-60	212.0	COG0782@1|root,COG0782@2|Bacteria,1RCXW@1224|Proteobacteria,1S3UP@1236|Gammaproteobacteria,1XEZP@135618|Methylococcales	135618|Methylococcales	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	greA	-	-	ko:K03624	-	-	-	-	ko00000,ko03021	-	-	-	GreA_GreB,GreA_GreB_N
DYD3_k127_6988035_5	404380.Gbem_0060	1.956e-31	131.0	2D51D@1|root,32TI0@2|Bacteria,1N6GW@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6988035_2	1121939.L861_01555	3.431e-77	261.0	28J1E@1|root,2Z8YB@2|Bacteria,1MWFX@1224|Proteobacteria,1S8AR@1236|Gammaproteobacteria,1XP24@135619|Oceanospirillales	135619|Oceanospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6988035_6	32057.KB217472_gene7893	4.145e-19	104.0	COG1413@1|root,COG5635@1|root,COG1413@2|Bacteria,COG5635@2|Bacteria,1G3GI@1117|Cyanobacteria,1HM4X@1161|Nostocales	1117|Cyanobacteria	CT	Ntpase (Nacht family)	-	-	-	-	-	-	-	-	-	-	-	-	HEAT_2,HEAT_PBS,NACHT
DYD3_k127_6988035_0	323261.Noc_A0023	3.911e-101	338.0	COG1672@1|root,COG1672@2|Bacteria,1N3UV@1224|Proteobacteria,1S0KK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	PFAM Archaeal ATPase	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_6988035_3	392500.Swoo_3062	2.052e-72	252.0	2F10C@1|root,33U1V@2|Bacteria,1NUUY@1224|Proteobacteria,1SNP3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6988035_1	857087.Metme_0332	1.383e-90	308.0	COG1373@1|root,COG1373@2|Bacteria,1R4HK@1224|Proteobacteria,1SSIT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	ATPase (AAA superfamily	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6993813_0	550540.Fbal_1922	3.675e-87	292.0	COG3647@1|root,COG3647@2|Bacteria,1N7NB@1224|Proteobacteria,1RS4F@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Membrane	yjdF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K08984	-	-	-	-	ko00000	-	-	-	DUF2238
DYD3_k127_6993813_1	1458357.BG58_17105	2.588e-51	200.0	29Y4B@1|root,30JXH@2|Bacteria,1RGTB@1224|Proteobacteria,2WIDX@28216|Betaproteobacteria,1K9UH@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Zinc-dependent metalloprotease	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6993813_2	448385.sce6747	4.534e-37	157.0	28YDT@1|root,34C17@2|Bacteria,1P39A@1224|Proteobacteria,43DWB@68525|delta/epsilon subdivisions,2WZ1S@28221|Deltaproteobacteria,2Z14R@29|Myxococcales	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6993813_3	1209072.ALBT01000038_gene2487	6.872e-17	94.0	COG1361@1|root,COG1361@2|Bacteria,1QVS6@1224|Proteobacteria,1S2VN@1236|Gammaproteobacteria,1FIAY@10|Cellvibrio	1236|Gammaproteobacteria	M	Conserved repeat domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7019894_3	1121937.AUHJ01000014_gene2670	2.977e-08	59.0	COG3725@1|root,COG3725@2|Bacteria,1RH1N@1224|Proteobacteria,1S6GK@1236|Gammaproteobacteria,467BI@72275|Alteromonadaceae	1236|Gammaproteobacteria	V	Membrane protein required for beta-lactamase induction	ampE	-	-	ko:K03807	-	-	-	-	ko00000	-	-	-	AmpE
DYD3_k127_7019894_0	1163617.SCD_n01692	1.024e-158	509.0	COG4198@1|root,COG4198@2|Bacteria,1NPPY@1224|Proteobacteria,2VM95@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Protein of unknown function (DUF1015)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1015
DYD3_k127_7019894_1	316067.Geob_2091	1.146e-88	296.0	COG2320@1|root,COG2320@2|Bacteria,1RH46@1224|Proteobacteria,42TFI@68525|delta/epsilon subdivisions,2WP4H@28221|Deltaproteobacteria,43VWM@69541|Desulfuromonadales	28221|Deltaproteobacteria	S	GrpB protein	-	-	-	-	-	-	-	-	-	-	-	-	GrpB
DYD3_k127_7019894_2	1278307.KB906978_gene3828	9.049e-73	253.0	COG4714@1|root,COG4714@2|Bacteria,1N40I@1224|Proteobacteria,1S1R3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	membrane-anchored protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF2167
DYD3_k127_7042119_3	204669.Acid345_3543	3.349e-06	51.0	COG3488@1|root,COG3488@2|Bacteria	2|Bacteria	C	Di-haem oxidoreductase, putative peroxidase	-	-	3.2.1.45	ko:K01201	ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142	-	R01498	RC00059,RC00451	ko00000,ko00001,ko01000	-	GH30	-	DHOR
DYD3_k127_7042119_4	204669.Acid345_3543	0.0002323	46.0	COG3488@1|root,COG3488@2|Bacteria	2|Bacteria	C	Di-haem oxidoreductase, putative peroxidase	-	-	3.2.1.45	ko:K01201	ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142	-	R01498	RC00059,RC00451	ko00000,ko00001,ko01000	-	GH30	-	DHOR
DYD3_k127_7042119_0	225937.HP15_2387	5.882e-172	543.0	COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,1RNJD@1236|Gammaproteobacteria,46A45@72275|Alteromonadaceae	1236|Gammaproteobacteria	M	Male sterility protein	-	-	4.1.1.35	ko:K08678	ko00520,ko01100,map00520,map01100	M00361	R01384	RC00508	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_7042119_2	585531.HMPREF0063_11188	1.587e-09	68.0	COG2520@1|root,COG2520@2|Bacteria	2|Bacteria	J	tRNA (guanine(37)-N(1))-methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
DYD3_k127_7042119_1	243231.GSU0036	3.221e-29	122.0	COG2843@1|root,COG2843@2|Bacteria,1P1MG@1224|Proteobacteria,42T4H@68525|delta/epsilon subdivisions,2WPIT@28221|Deltaproteobacteria,43U0U@69541|Desulfuromonadales	28221|Deltaproteobacteria	M	Bacterial capsule synthesis protein PGA_cap	-	-	-	ko:K07282	-	-	-	-	ko00000	-	-	-	PGA_cap
DYD3_k127_7076959_0	998674.ATTE01000001_gene3434	6.238e-08	55.0	2EMPC@1|root,33FBT@2|Bacteria,1QNQV@1224|Proteobacteria,1SI44@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7079150_0	1122194.AUHU01000003_gene2135	5.021e-36	142.0	COG0726@1|root,COG3509@1|root,COG4677@1|root,COG0726@2|Bacteria,COG3509@2|Bacteria,COG4677@2|Bacteria	2|Bacteria	G	pectinesterase activity	-	-	3.2.1.89	ko:K01224,ko:K03932	-	-	-	-	ko00000,ko01000	-	CE1	-	CBM60,CBM_2,Calx-beta,Esterase_phd,Glyco_hydro_11,Peptidase_S9,RicinB_lectin_2,VCBS
DYD3_k127_7079150_1	373994.Riv7116_6487	1.316e-28	118.0	COG0500@1|root,COG2226@2|Bacteria,1G4JV@1117|Cyanobacteria	1117|Cyanobacteria	Q	Methylase involved in ubiquinone menaquinone biosynthesis	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_31
DYD3_k127_7079150_2	69395.JQLZ01000002_gene1421	6.381e-20	91.0	COG3507@1|root,COG3507@2|Bacteria,1QS8P@1224|Proteobacteria,2U2I7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Belongs to the glycosyl hydrolase 43 family	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_43
DYD3_k127_7079375_1	1116472.MGMO_120c00580	1.045e-43	166.0	COG1300@1|root,COG1300@2|Bacteria,1Q1GN@1224|Proteobacteria,1RR61@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	SpoIIM
DYD3_k127_7079375_0	1116472.MGMO_120c00590	3.618e-57	211.0	COG1714@1|root,COG1714@2|Bacteria,1RIE9@1224|Proteobacteria,1S566@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	membrane protein domain	-	-	-	-	-	-	-	-	-	-	-	-	RDD
DYD3_k127_7079375_3	402777.KB235903_gene694	3.891e-08	67.0	COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1G20P@1117|Cyanobacteria,1H8AZ@1150|Oscillatoriales	1117|Cyanobacteria	L	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	CHAT,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8
DYD3_k127_7117734_4	1410619.SRDD_27290	7.105e-05	46.0	COG3064@1|root,COG3064@2|Bacteria,1NDA8@1224|Proteobacteria,1SIP4@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF1283,Excalibur
DYD3_k127_7117734_0	1443665.JACA01000003_gene613	5.317e-91	319.0	COG0596@1|root,COG0596@2|Bacteria,4NQYB@976|Bacteroidetes,1I318@117743|Flavobacteriia,2YK2Q@290174|Aquimarina	976|Bacteroidetes	S	TAP-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_4
DYD3_k127_7121796_1	1163617.SCD_n02952	5.231e-17	91.0	COG5338@1|root,COG5338@2|Bacteria,1R7QB@1224|Proteobacteria,2WFN2@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7121796_0	396588.Tgr7_2396	4.61e-74	257.0	COG1716@1|root,COG3267@1|root,COG1716@2|Bacteria,COG3267@2|Bacteria,1MU3G@1224|Proteobacteria,1RMI0@1236|Gammaproteobacteria,1WWX7@135613|Chromatiales	135613|Chromatiales	U	Type II secretory pathway component ExeA	-	-	-	ko:K02450,ko:K12283	-	M00331	-	-	ko00000,ko00002,ko02044	9.B.42	-	-	AAA_22
DYD3_k127_7142370_0	65672.G4T9D2	1.806e-77	284.0	COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis	4751|Fungi	L	Reverse transcriptase (RNA-dependent DNA polymerase)	-	-	-	-	-	-	-	-	-	-	-	-	RVT_2,gag_pre-integrs,rve
DYD3_k127_7176778_1	1123401.JHYQ01000002_gene2650	1.565e-15	82.0	COG4974@1|root,COG4974@2|Bacteria,1MVAN@1224|Proteobacteria,1RMSS@1236|Gammaproteobacteria,460A2@72273|Thiotrichales	72273|Thiotrichales	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_4,Phage_integrase
DYD3_k127_7176778_0	1173024.KI912149_gene5559	8.456e-39	151.0	COG1670@1|root,COG1670@2|Bacteria,1G6BV@1117|Cyanobacteria,1JM95@1189|Stigonemataceae	1117|Cyanobacteria	J	Acetyltransferase (GNAT) domain	-	-	2.3.1.128	ko:K03790	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_3
DYD3_k127_7210779_2	156578.ATW7_14241	0.0008668	42.0	COG2963@1|root,COG2963@2|Bacteria,1N1CG@1224|Proteobacteria,1SAIC@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	Transposase	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD3_k127_7210779_1	388413.ALPR1_05805	1.128e-07	61.0	2EK83@1|root,302UY@2|Bacteria,4P3G1@976|Bacteroidetes	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7210779_0	1000565.METUNv1_02451	8.489e-62	218.0	COG0515@1|root,COG4252@1|root,COG0515@2|Bacteria,COG4252@2|Bacteria,1MV1P@1224|Proteobacteria,2VKJ8@28216|Betaproteobacteria,2KV51@206389|Rhodocyclales	206389|Rhodocyclales	KLT	Protein tyrosine kinase	-	-	2.7.11.1	ko:K12132	-	-	-	-	ko00000,ko01000,ko01001	-	-	-	CHASE2,Pkinase
DYD3_k127_734353_0	1122194.AUHU01000002_gene2784	1.75e-192	604.0	COG0726@1|root,COG3693@1|root,COG5297@1|root,COG0726@2|Bacteria,COG3693@2|Bacteria,COG5297@2|Bacteria,1R8V3@1224|Proteobacteria,1RRR9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	G	Glycosyl hydrolase family 62	-	GO:0005575,GO:0005576	-	-	-	-	-	-	-	-	-	-	CBM_2,CBM_6,Glyco_hydro_62
DYD3_k127_734353_4	1056820.KB900699_gene1255	7.943e-06	48.0	COG3664@1|root,COG3693@1|root,COG5297@1|root,COG3664@2|Bacteria,COG3693@2|Bacteria,COG5297@2|Bacteria,1R7BZ@1224|Proteobacteria,1S17S@1236|Gammaproteobacteria,2PN39@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	G	Ca-dependent carbohydrate-binding module xylan-binding	-	-	-	-	-	-	-	-	-	-	-	-	CBM60,CBM_5_12_2,Glyco_hydro_10
DYD3_k127_734353_1	84531.JMTZ01000045_gene1015	3.092e-132	443.0	COG1305@1|root,COG1305@2|Bacteria,1R5BE@1224|Proteobacteria,1SYRA@1236|Gammaproteobacteria,1XCSR@135614|Xanthomonadales	135614|Xanthomonadales	E	Domain of Unknown Function with PDB structure (DUF3857)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3857,Transglut_core
DYD3_k127_734353_2	1547437.LL06_13865	3.509e-64	242.0	COG1131@1|root,COG1131@2|Bacteria,1MZGD@1224|Proteobacteria,2UNZX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	AAA domain, putative AbiEii toxin, Type IV TA system	-	-	-	-	-	-	-	-	-	-	-	-	AAA_21
DYD3_k127_742746_2	314262.MED193_08698	1.584e-11	69.0	COG0582@1|root,COG0582@2|Bacteria,1NWGS@1224|Proteobacteria,2TQWR@28211|Alphaproteobacteria,2P57H@2433|Roseobacter	28211|Alphaproteobacteria	L	Phage integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
DYD3_k127_742746_1	1122201.AUAZ01000017_gene2937	8.415e-69	241.0	COG0582@1|root,COG0582@2|Bacteria,1NWGS@1224|Proteobacteria,1S5J8@1236|Gammaproteobacteria,468G2@72275|Alteromonadaceae	1236|Gammaproteobacteria	L	Phage integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
DYD3_k127_742746_0	1123053.AUDG01000018_gene3020	6.37e-183	580.0	COG1629@1|root,COG4771@2|Bacteria,1R5B9@1224|Proteobacteria,1S13U@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Carboxypeptidase regulatory-like domain	-	-	-	-	-	-	-	-	-	-	-	-	CarboxypepD_reg,Plug,TonB_dep_Rec
DYD3_k127_760757_0	768706.Desor_2212	2.233e-88	299.0	COG0517@1|root,COG0517@2|Bacteria,1TQ4J@1239|Firmicutes,24B68@186801|Clostridia,260BK@186807|Peptococcaceae	186801|Clostridia	S	Transposase	-	-	-	-	-	-	-	-	-	-	-	-	Y2_Tnp,Zn_Tnp_IS91
DYD3_k127_760757_1	522306.CAP2UW1_3973	5.641e-69	243.0	COG4974@1|root,COG4974@2|Bacteria,1MVAN@1224|Proteobacteria,2VHUC@28216|Betaproteobacteria	28216|Betaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_4,Phage_integrase
DYD3_k127_836441_4	156578.ATW7_14241	0.0001951	44.0	COG2963@1|root,COG2963@2|Bacteria,1N1CG@1224|Proteobacteria,1SAIC@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	Transposase	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD3_k127_836441_0	1217715.F994_00489	3.035e-77	269.0	arCOG14015@1|root,30H02@2|Bacteria,1R3JD@1224|Proteobacteria,1S3GD@1236|Gammaproteobacteria,3NN8E@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_836441_1	714943.Mucpa_3597	4.84e-52	196.0	COG4099@1|root,COG4099@2|Bacteria,4NFSH@976|Bacteroidetes,1IS3G@117747|Sphingobacteriia	976|Bacteroidetes	S	PFAM phospholipase Carboxylesterase	-	-	-	-	-	-	-	-	-	-	-	-	DLH,Esterase,Peptidase_S9
DYD3_k127_836441_3	909663.KI867150_gene1516	3.934e-05	46.0	COG3093@1|root,COG3093@2|Bacteria,1N76J@1224|Proteobacteria,42VQB@68525|delta/epsilon subdivisions,2WRF4@28221|Deltaproteobacteria,2MSE5@213462|Syntrophobacterales	28221|Deltaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	ko:K21498	-	-	-	-	ko00000,ko02048	-	-	-	HTH_3
DYD3_k127_840403_1	485913.Krac_9148	1.204e-38	151.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria	2|Bacteria	L	Transposase	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3,HTH_23,HTH_32,HTH_33
DYD3_k127_840403_0	485913.Krac_1959	1.646e-54	197.0	COG3335@1|root,COG3335@2|Bacteria	2|Bacteria	L	DDE superfamily endonuclease	-	-	-	ko:K07494	-	-	-	-	ko00000	-	-	-	DDE_3,HTH_23,HTH_32,HTH_33
DYD3_k127_88592_1	35754.JNYJ01000066_gene8731	1.828e-06	51.0	2E4KR@1|root,32ZFQ@2|Bacteria,2II90@201174|Actinobacteria,4DDQY@85008|Micromonosporales	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_88592_0	1288963.ADIS_1570	8.111e-88	313.0	COG1131@1|root,COG1131@2|Bacteria	2|Bacteria	V	ATPase activity	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	AAA_15,AAA_21
DYD3_k127_89444_0	485916.Dtox_2025	2.849e-75	257.0	COG2801@1|root,COG2963@1|root,COG2801@2|Bacteria,COG2963@2|Bacteria,1TRNK@1239|Firmicutes,24B7I@186801|Clostridia,2601S@186807|Peptococcaceae	186801|Clostridia	L	PFAM Transposase IS3 IS911	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,HTH_Tnp_1,rve,rve_3
DYD3_k127_89444_3	1536772.R70723_30360	7.18e-14	81.0	2DHHI@1|root,2ZZSX@2|Bacteria,1TYZA@1239|Firmicutes,4I85M@91061|Bacilli,26YYV@186822|Paenibacillaceae	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS66
DYD3_k127_89444_1	1408303.JNJJ01000103_gene2428	3.559e-47	183.0	28JEU@1|root,2Z98W@2|Bacteria,1VRU4@1239|Firmicutes,4HTWS@91061|Bacilli	91061|Bacilli	S	PFAM MULE transposase, conserved domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_89444_2	1051632.TPY_3127	5.133e-25	107.0	COG2801@1|root,COG2963@1|root,COG2801@2|Bacteria,COG2963@2|Bacteria,1TRNK@1239|Firmicutes,24B7I@186801|Clostridia	186801|Clostridia	L	PFAM transposase IS3 IS911 family protein	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,HTH_Tnp_1,rve,rve_3
DYD3_k127_909937_0	102129.Lepto7375DRAFT_5666	1.916e-163	525.0	COG5433@1|root,COG5433@2|Bacteria,1G2IT@1117|Cyanobacteria,1HHU1@1150|Oscillatoriales	1117|Cyanobacteria	L	IMG reference gene	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1
DYD3_k127_909937_1	246197.MXAN_7435	0.0008038	46.0	COG2267@1|root,COG2267@2|Bacteria,1QGQT@1224|Proteobacteria,4397J@68525|delta/epsilon subdivisions,2X4EF@28221|Deltaproteobacteria,2YYV4@29|Myxococcales	28221|Deltaproteobacteria	I	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_998706_0	1283300.ATXB01000001_gene2414	1.606e-160	518.0	COG3385@1|root,COG3385@2|Bacteria,1PHKQ@1224|Proteobacteria,1SIFZ@1236|Gammaproteobacteria	1224|Proteobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_5
DYD3_k127_999297_0	1187851.A33M_3331	5.26e-36	158.0	COG3170@1|root,COG3170@2|Bacteria,1QVEE@1224|Proteobacteria,2TWDG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NU	Phage P22-like portal protein	-	-	-	-	-	-	-	-	-	-	-	-	P22_portal
## 1564 queries scanned
## Total time (seconds): 4.02803373336792
## Rate: 388.28 q/s