## Mon Mar 17 03:43:53 2025
## emapper-2.1.9
## /home/zhangkaihang/.conda/envs/eggnog-mapper/bin/emapper.py -i /home/zhangkaihang/metadata_analysis/metawrap/paddysoil/4paddy/bin4gtdbtk/DYD3_bin.65.fa -m mmseqs --itype genome -o DYD3_bin.65 --output_dir /home/zhangkaihang/metadata_analysis/eggnog-mapper/paddysoil/4paddy/DYD3_bin.65 --cpu 8
##
#query	seed_ortholog	evalue	score	eggNOG_OGs	max_annot_lvl	COG_category	Description	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	PFAMs
DYD3_k127_1004566_0	1116472.MGMO_120c00510	1.338e-142	490.0	COG3391@1|root,COG4249@1|root,COG3391@2|Bacteria,COG4249@2|Bacteria,1PHCU@1224|Proteobacteria,1SV06@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
DYD3_k127_1004566_1	1380394.JADL01000010_gene4105	3.616e-81	272.0	COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2TRI8@28211|Alphaproteobacteria,2JPIE@204441|Rhodospirillales	204441|Rhodospirillales	S	AAA domain (dynein-related subfamily)	-	-	-	-	-	-	-	-	-	-	-	-	AAA,AAA_5
DYD3_k127_1025119_2	1211115.ALIQ01000006_gene4328	2.106e-130	422.0	COG3181@1|root,COG3181@2|Bacteria,1MXEX@1224|Proteobacteria,2TTSX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	ko:K07795	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctC
DYD3_k127_1025119_3	1144343.PMI41_01263	4.766e-99	327.0	COG0745@1|root,COG0745@2|Bacteria,1N0YI@1224|Proteobacteria,2TSV8@28211|Alphaproteobacteria,43RM5@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	tctD	-	-	ko:K07774	ko02020,map02020	M00457	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1025119_0	1211115.ALIQ01000006_gene4326	1.627e-165	535.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,2TT4E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Histidine kinase	-	-	2.7.13.3	ko:K07649	ko02020,map02020	M00457	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	2CSK_N,HATPase_c,HisKA,SBP_bac_11
DYD3_k127_1025119_1	864069.MicloDRAFT_00061450	4.414e-144	468.0	COG1840@1|root,COG1840@2|Bacteria,1MY20@1224|Proteobacteria,2U2F8@28211|Alphaproteobacteria,1JRI3@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	Extracellular solute-binding protein	-	-	-	ko:K02012	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.10	-	-	SBP_bac_1,SBP_bac_11,SBP_bac_6
DYD3_k127_1025119_4	1205680.CAKO01000030_gene4835	1.783e-61	220.0	COG1272@1|root,COG1272@2|Bacteria,1PGRH@1224|Proteobacteria,2TSXY@28211|Alphaproteobacteria,2JT77@204441|Rhodospirillales	204441|Rhodospirillales	S	Haemolysin-III related	-	-	-	ko:K11068	-	-	-	-	ko00000,ko02042	-	-	-	HlyIII
DYD3_k127_1025119_5	1121028.ARQE01000003_gene507	2.085e-05	49.0	COG4655@1|root,COG4655@2|Bacteria,1R41B@1224|Proteobacteria,2TVD0@28211|Alphaproteobacteria,2PKPK@255475|Aurantimonadaceae	28211|Alphaproteobacteria	S	Putative Flp pilus-assembly TadE/G-like	-	-	-	-	-	-	-	-	-	-	-	-	Tad,Tad_C
DYD3_k127_1045900_1	1121106.JQKB01000044_gene4706	1.257e-27	115.0	COG0611@1|root,COG0611@2|Bacteria,1MU9X@1224|Proteobacteria,2TTI6@28211|Alphaproteobacteria,2JQC6@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1	thiL	-	2.7.4.16	ko:K00946	ko00730,ko01100,map00730,map01100	M00127	R00617	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_1045900_0	631454.N177_3341	2.353e-98	334.0	COG0477@1|root,COG2814@2|Bacteria,1MW59@1224|Proteobacteria,2TRA3@28211|Alphaproteobacteria,1JN9D@119043|Rhodobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_22800	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
DYD3_k127_1045900_2	1244869.H261_21803	1.483e-06	52.0	COG3609@1|root,COG3609@2|Bacteria,1NA19@1224|Proteobacteria,2UHT0@28211|Alphaproteobacteria,2JUGN@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional regulators containing the CopG Arc MetJ DNA-binding domain	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_1051377_2	460265.Mnod_5316	1.757e-123	401.0	COG3391@1|root,COG3391@2|Bacteria,1P862@1224|Proteobacteria,2TR6Z@28211|Alphaproteobacteria,1JRHF@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	TIGRFAM 40-residue YVTN family beta-propeller repeat protein	MA20_34510	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_D1,Lactonase
DYD3_k127_1051377_0	864069.MicloDRAFT_00002270	5.406e-162	519.0	COG0683@1|root,COG0683@2|Bacteria,1MWGW@1224|Proteobacteria,2TRSD@28211|Alphaproteobacteria,1JRFI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	ABC transporter substrate-binding protein	MA20_34515	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
DYD3_k127_1051377_1	1131814.JAFO01000001_gene4927	2.786e-142	471.0	COG0642@1|root,COG2205@2|Bacteria,1N5YU@1224|Proteobacteria,2TTXK@28211|Alphaproteobacteria,3EY3M@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
DYD3_k127_1051377_4	1038858.AXBA01000004_gene250	7.853e-106	348.0	COG0745@1|root,COG0745@2|Bacteria,1R5FR@1224|Proteobacteria,2TTEH@28211|Alphaproteobacteria,3EZIT@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	prrA	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1051377_8	1131814.JAFO01000001_gene4921	5.601e-57	206.0	2C1VZ@1|root,32U3F@2|Bacteria,1N5Y8@1224|Proteobacteria,2UD0D@28211|Alphaproteobacteria,3F03F@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1051377_9	1131814.JAFO01000001_gene4920	1.266e-43	163.0	2C7YM@1|root,32RK3@2|Bacteria,1N2IQ@1224|Proteobacteria,2UC0T@28211|Alphaproteobacteria,3EZTS@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1051377_5	460265.Mnod_5984	1.211e-99	331.0	COG5501@1|root,COG5501@2|Bacteria,1PB0I@1224|Proteobacteria,2TR7M@28211|Alphaproteobacteria,1JSAS@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM Sulphur oxidation protein SoxZ	MA20_34470	-	-	ko:K17226	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	SoxY,SoxZ
DYD3_k127_1051377_6	1038858.AXBA01000004_gene258	9.615e-67	232.0	COG0607@1|root,COG0607@2|Bacteria,1MZG3@1224|Proteobacteria,2U1W0@28211|Alphaproteobacteria,3EZEN@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	COG0607 Rhodanese-related sulfurtransferase	-	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
DYD3_k127_1051377_3	1038858.AXBA01000004_gene259	7.349e-112	370.0	COG0834@1|root,COG0834@2|Bacteria,1MWWZ@1224|Proteobacteria,2TU2F@28211|Alphaproteobacteria,3EXZ4@335928|Xanthobacteraceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	xoxJ	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_1051377_7	1096546.WYO_3366	1.644e-64	224.0	COG2010@1|root,COG2010@2|Bacteria,1RD7T@1224|Proteobacteria,2U7AF@28211|Alphaproteobacteria,1JS3I@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	cycB	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
DYD3_k127_1059092_16	1110502.TMO_1755	1.551e-09	65.0	COG2861@1|root,COG2861@2|Bacteria,1N3JP@1224|Proteobacteria,2TUFD@28211|Alphaproteobacteria,2JRXP@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	ko:K09798	-	-	-	-	ko00000	-	-	-	Polysacc_deac_2
DYD3_k127_1059092_3	330084.JNYZ01000035_gene9131	2.493e-124	415.0	COG4638@1|root,COG4638@2|Bacteria,2GP4B@201174|Actinobacteria	201174|Actinobacteria	P	PFAM ring hydroxylating dioxygenase, alpha subunit	-	-	-	-	-	-	-	-	-	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_1059092_14	1121933.AUHH01000021_gene1611	4.322e-45	177.0	COG5517@1|root,COG5517@2|Bacteria,2I8EV@201174|Actinobacteria,4DW9I@85009|Propionibacteriales	201174|Actinobacteria	Q	Ring hydroxylating beta subunit	bphE	-	-	ko:K14749	ko00642,ko01100,ko01120,ko01220,map00642,map01100,map01120,map01220	-	R05440	RC00098	br01602,ko00000,ko00001,ko01000	-	-	-	Ring_hydroxyl_B
DYD3_k127_1059092_7	1415779.JOMH01000001_gene1552	2.832e-105	348.0	COG1028@1|root,COG1028@2|Bacteria,1N32I@1224|Proteobacteria,1RRJG@1236|Gammaproteobacteria,1X5BU@135614|Xanthomonadales	135614|Xanthomonadales	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.3.1.56	ko:K08690	ko00621,ko01100,ko01120,ko01220,map00621,map01100,map01120,map01220	M00543	R05239,R05241	RC00534	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short
DYD3_k127_1059092_10	1038869.AXAN01000035_gene2174	6.459e-88	311.0	COG0346@1|root,COG0346@2|Bacteria,1P5FR@1224|Proteobacteria,2VP8J@28216|Betaproteobacteria,1K62Z@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	bphC	-	1.13.11.39	ko:K00462	ko00361,ko00621,ko01100,ko01120,ko01220,map00361,map00621,map01100,map01120,map01220	M00543	R03462,R05245,R07827	RC00387,RC01306	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
DYD3_k127_1059092_6	1469613.JT55_13080	4.916e-113	371.0	COG0596@1|root,COG0596@2|Bacteria,1R32V@1224|Proteobacteria,2TZX2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1059092_12	231434.JQJH01000001_gene1773	2.921e-68	242.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TUWC@28211|Alphaproteobacteria,3NC67@45404|Beijerinckiaceae	28211|Alphaproteobacteria	Q	hydratase'	-	-	4.2.1.80	ko:K02554	ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R02601,R04781	RC00750,RC01213	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_1059092_15	1219035.NT2_09_01300	1.57e-22	110.0	COG2207@1|root,COG2207@2|Bacteria,1NXX9@1224|Proteobacteria,2TWK7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_6,HTH_18
DYD3_k127_1059092_11	670307.HYPDE_31428	1.353e-76	278.0	COG0512@1|root,COG0512@2|Bacteria,1MV5Y@1224|Proteobacteria,2TU3N@28211|Alphaproteobacteria,3N6Q1@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	EH	Anthranilate synthase	trpG	-	2.6.1.85,4.1.3.27	ko:K01658,ko:K01664	ko00400,ko00405,ko00790,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map00790,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986,R01716	RC00010,RC01418,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase
DYD3_k127_1059092_2	1333998.M2A_1017	1.272e-130	436.0	COG0547@1|root,COG0547@2|Bacteria,1MUPV@1224|Proteobacteria,2TR8S@28211|Alphaproteobacteria,4BP88@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)	trpD	GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.4.2.18,4.1.3.27	ko:K00766,ko:K13497	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R00985,R00986,R01073	RC00010,RC00440,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	Glycos_trans_3N,Glycos_transf_3
DYD3_k127_1059092_8	316058.RPB_2798	5.016e-102	352.0	COG0134@1|root,COG0134@2|Bacteria,1MW5K@1224|Proteobacteria,2TSZE@28211|Alphaproteobacteria,3JQR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the TrpC family	trpC	GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831	4.1.1.48,5.3.1.24	ko:K01609,ko:K13498	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03508,R03509	RC00944,RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	IGPS
DYD3_k127_1059092_13	357808.RoseRS_0543	6.236e-53	191.0	COG0315@1|root,COG0315@2|Bacteria,2G6PC@200795|Chloroflexi,375NJ@32061|Chloroflexia	32061|Chloroflexia	H	Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP)	moaC	-	4.6.1.17	ko:K03637	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R11372	RC03425	ko00000,ko00001,ko01000	-	-	-	MoaC
DYD3_k127_1059092_5	414684.RC1_0101	2.669e-122	413.0	COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,2TQRI@28211|Alphaproteobacteria,2JPHJ@204441|Rhodospirillales	204441|Rhodospirillales	H	MoeA N-terminal region (domain I and II)	moeA	-	2.10.1.1	ko:K03750	ko00790,ko01100,map00790,map01100	-	R09735	RC03462	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N
DYD3_k127_1059092_1	1380391.JIAS01000019_gene1338	3.553e-143	459.0	COG2267@1|root,COG2267@2|Bacteria,1QU3E@1224|Proteobacteria,2TVXS@28211|Alphaproteobacteria,2JQNK@204441|Rhodospirillales	204441|Rhodospirillales	I	Belongs to the peptidase S33 family	pip	-	3.4.11.5	ko:K01259	ko00330,map00330	-	R00135	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1,Abhydrolase_4
DYD3_k127_1059092_9	1121861.KB899911_gene1325	9.442e-89	298.0	COG1974@1|root,COG1974@2|Bacteria,1MW80@1224|Proteobacteria,2TT7W@28211|Alphaproteobacteria,2JQV9@204441|Rhodospirillales	204441|Rhodospirillales	K	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	lexA	-	3.4.21.88	ko:K01356	-	M00729	-	-	ko00000,ko00002,ko01000,ko01002,ko03400	-	-	-	LexA_DNA_bind,Peptidase_S24
DYD3_k127_1059092_4	1316936.K678_15938	2.516e-123	423.0	COG0658@1|root,COG0658@2|Bacteria,1MUKF@1224|Proteobacteria,2TRD5@28211|Alphaproteobacteria,2JR1J@204441|Rhodospirillales	204441|Rhodospirillales	S	Competence protein	-	-	-	ko:K02238	-	M00429	-	-	ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2	-	-	Competence,DUF4131
DYD3_k127_1059092_0	1207063.P24_10480	6.407e-199	630.0	COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,2TRSU@28211|Alphaproteobacteria,2JQAZ@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_1071762_3	1380394.JADL01000001_gene2088	4.586e-94	317.0	COG1806@1|root,COG1806@2|Bacteria,1MUHU@1224|Proteobacteria,2TT66@28211|Alphaproteobacteria,2JPUF@204441|Rhodospirillales	204441|Rhodospirillales	S	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation	-	-	2.7.11.33,2.7.4.28	ko:K09773	-	-	-	-	ko00000,ko01000	-	-	-	Kinase-PPPase
DYD3_k127_1071762_1	1380394.JADL01000001_gene2087	2.048e-125	410.0	COG0407@1|root,COG0407@2|Bacteria,1MUG1@1224|Proteobacteria,2TQQV@28211|Alphaproteobacteria,2JQYD@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III	hemE	-	4.1.1.37	ko:K01599	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03197,R04972	RC00872	ko00000,ko00001,ko00002,ko01000	-	-	-	URO-D
DYD3_k127_1071762_2	1282876.BAOK01000002_gene176	4.47e-123	404.0	COG0276@1|root,COG0276@2|Bacteria,1MVR1@1224|Proteobacteria,2TSMS@28211|Alphaproteobacteria,4BPW9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the ferrous insertion into protoporphyrin IX	hemH	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	4.99.1.1,4.99.1.9	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R00310,R11329	RC01012	ko00000,ko00001,ko00002,ko01000	-	-	-	Ferrochelatase
DYD3_k127_1071762_4	1211115.ALIQ01000175_gene3645	6.869e-53	191.0	COG1981@1|root,COG1981@2|Bacteria,1RHGS@1224|Proteobacteria,2U987@28211|Alphaproteobacteria,3NBCW@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family (UPF0093)	MA20_24805	-	-	ko:K08973	-	-	-	-	ko00000	-	-	-	UPF0093
DYD3_k127_1071762_0	1244869.H261_08083	6.374e-239	743.0	COG1158@1|root,COG1158@2|Bacteria,1MUCF@1224|Proteobacteria,2TRB4@28211|Alphaproteobacteria,2JPVN@204441|Rhodospirillales	204441|Rhodospirillales	K	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template	rho	-	-	ko:K03628	ko03018,map03018	-	-	-	ko00000,ko00001,ko03019,ko03021	-	-	-	ATP-synt_ab,Rho_N,Rho_RNA_bind
DYD3_k127_1085885_3	1038858.AXBA01000003_gene4244	6.615e-05	51.0	COG0687@1|root,COG0687@2|Bacteria,1PRWU@1224|Proteobacteria,2U2MI@28211|Alphaproteobacteria,3EYWY@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Required for the activity of the bacterial periplasmic transport system of putrescine	potD	-	-	ko:K11069	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	SBP_bac_6,SBP_bac_8
DYD3_k127_1085885_0	402881.Plav_0027	5.522e-255	809.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria	1224|Proteobacteria	T	Exporters of the RND superfamily	-	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	LolA_like,MMPL,Polyketide_cyc2
DYD3_k127_1085885_1	644283.Micau_3569	4.578e-30	128.0	COG1309@1|root,COG1309@2|Bacteria,2IEU9@201174|Actinobacteria,4DCCF@85008|Micromonosporales	201174|Actinobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_1085885_2	1123504.JQKD01000024_gene303	5.586e-20	97.0	COG2259@1|root,COG2259@2|Bacteria,1N1VA@1224|Proteobacteria,2VTGC@28216|Betaproteobacteria,4AJHN@80864|Comamonadaceae	28216|Betaproteobacteria	S	DoxX	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD3_k127_1092007_12	1282876.BAOK01000001_gene2091	0.0009772	47.0	COG1197@1|root,COG1197@2|Bacteria,1MUXG@1224|Proteobacteria,2TR2H@28211|Alphaproteobacteria,4BP91@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site	mfd	-	-	ko:K03723	ko03420,map03420	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF
DYD3_k127_1092007_9	1121033.AUCF01000004_gene5011	1.378e-27	114.0	COG2938@1|root,COG2938@2|Bacteria,1N6SJ@1224|Proteobacteria,2UFF5@28211|Alphaproteobacteria,2JU8K@204441|Rhodospirillales	204441|Rhodospirillales	S	Flavinator of succinate dehydrogenase	-	-	-	ko:K09159	-	-	-	-	ko00000,ko02048	-	-	-	Sdh5
DYD3_k127_1092007_1	1089552.KI911559_gene2175	4.221e-198	637.0	COG4176@1|root,COG4176@2|Bacteria,1MUM4@1224|Proteobacteria,2TT2M@28211|Alphaproteobacteria,2JQVR@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02001	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1
DYD3_k127_1092007_2	1089552.KI911559_gene2174	2.281e-137	446.0	COG4175@1|root,COG4175@2|Bacteria,1MU86@1224|Proteobacteria,2TS8Y@28211|Alphaproteobacteria,2JVY2@204441|Rhodospirillales	204441|Rhodospirillales	E	ATPases associated with a variety of cellular activities	-	-	3.6.3.32	ko:K02000	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.12	-	-	ABC_tran
DYD3_k127_1092007_3	1082933.MEA186_23980	9.612e-129	418.0	COG2113@1|root,COG2113@2|Bacteria,1MVXS@1224|Proteobacteria,2U8XG@28211|Alphaproteobacteria,43N60@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	of ABC-type glycine betaine transport system	-	-	-	ko:K02002	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	OpuAC
DYD3_k127_1092007_0	1316936.K678_04572	2.652e-269	845.0	COG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,2TR86@28211|Alphaproteobacteria,2JPJU@204441|Rhodospirillales	204441|Rhodospirillales	L	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)	recG	-	3.6.4.12	ko:K03655	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C,RecG_wedge
DYD3_k127_1092007_7	1205680.CAKO01000038_gene1961	2.076e-57	210.0	COG1024@1|root,COG1024@2|Bacteria,1RG4N@1224|Proteobacteria,2U8TJ@28211|Alphaproteobacteria,2JWTN@204441|Rhodospirillales	204441|Rhodospirillales	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_1092007_5	1121406.JAEX01000005_gene2904	3.402e-73	256.0	COG2962@1|root,COG2962@2|Bacteria,1MX5G@1224|Proteobacteria,42QPT@68525|delta/epsilon subdivisions,2WN1M@28221|Deltaproteobacteria,2M987@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	TIGRFAM RarD protein, DMT superfamily transporter	rarD	-	-	ko:K05786	-	-	-	-	ko00000,ko02000	2.A.7.7	-	-	EamA
DYD3_k127_1092007_10	633131.TR2A62_1584	3.688e-26	117.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2TR2B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Sel1 domain protein repeat-containing protein	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
DYD3_k127_1092007_4	189753.AXAS01000100_gene6797	8.076e-81	281.0	COG0625@1|root,COG0625@2|Bacteria,1P71B@1224|Proteobacteria,2U1A5@28211|Alphaproteobacteria,3JXHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_3
DYD3_k127_1092007_6	1430440.MGMSRv2_4106	5.311e-64	231.0	COG2885@1|root,COG3637@1|root,COG2885@2|Bacteria,COG3637@2|Bacteria,1N6EM@1224|Proteobacteria,2U17R@28211|Alphaproteobacteria,2JRTJ@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the ompA family	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA,Surface_Ag_2
DYD3_k127_1092007_8	1150626.PHAMO_40124	5.203e-56	208.0	COG2885@1|root,COG3637@1|root,COG2885@2|Bacteria,COG3637@2|Bacteria,1N6EM@1224|Proteobacteria,2U17R@28211|Alphaproteobacteria,2JS5S@204441|Rhodospirillales	204441|Rhodospirillales	M	COG3637 Opacity protein and related surface antigens	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA
DYD3_k127_1110629_2	1244869.H261_04203	5.722e-20	96.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2TSB6@28211|Alphaproteobacteria,2JPEQ@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K07799	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	8.A.1	-	-	Biotin_lipoyl_2,HlyD_D23
DYD3_k127_1110629_1	84531.JMTZ01000065_gene1884	1.213e-136	449.0	COG1819@1|root,COG1819@2|Bacteria,1MVI7@1224|Proteobacteria,1S57B@1236|Gammaproteobacteria,1X5IY@135614|Xanthomonadales	135614|Xanthomonadales	CG	Glycosyl transferases, related to UDP-glucuronosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_28,UDPGT
DYD3_k127_1110629_0	311403.Arad_8972	0.0	1287.0	COG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria,2TRUN@28211|Alphaproteobacteria,4BNT1@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	Phosphopantetheine attachment site	vbsS	-	6.3.2.14	ko:K02364	ko01053,ko01110,ko01130,map01053,map01110,map01130	-	R07644	RC00162,RC03046	ko00000,ko00001,ko01000,ko01008	-	-	-	AMP-binding,AMP-binding_C,Acyl_transf_1,Aminotran_3,Condensation,KAsynt_C_assoc,Ketoacyl-synt_C,PP-binding,Thioesterase,ketoacyl-synt
DYD3_k127_1113627_5	84531.JMTZ01000065_gene1883	3.457e-67	239.0	COG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria,1RPAG@1236|Gammaproteobacteria,1X3AB@135614|Xanthomonadales	135614|Xanthomonadales	Q	non-ribosomal peptide synthetase	entF	-	6.3.2.14	ko:K02364	ko01053,ko01110,ko01130,map01053,map01110,map01130	-	R07644	RC00162,RC03046	ko00000,ko00001,ko01000,ko01008	-	-	-	AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase
DYD3_k127_1113627_6	1174528.JH992893_gene5895	5.404e-35	145.0	COG2091@1|root,COG2091@2|Bacteria,1G5GA@1117|Cyanobacteria,1JH83@1189|Stigonemataceae	1117|Cyanobacteria	H	4'-phosphopantetheinyl transferase superfamily	-	-	-	ko:K06133	ko00770,map00770	-	R01625	RC00002	ko00000,ko00001,ko01000	-	-	-	ACPS
DYD3_k127_1113627_0	69395.JQLZ01000002_gene1255	3.404e-235	739.0	COG3119@1|root,COG3119@2|Bacteria,1MUJH@1224|Proteobacteria,2TSB8@28211|Alphaproteobacteria,2KHPC@204458|Caulobacterales	204458|Caulobacterales	P	Sulfatase	-	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
DYD3_k127_1113627_1	190650.CC_1173	6.555e-119	390.0	COG1262@1|root,COG1262@2|Bacteria,1MZ25@1224|Proteobacteria,2TRJH@28211|Alphaproteobacteria,2KIU8@204458|Caulobacterales	204458|Caulobacterales	S	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase
DYD3_k127_1113627_2	1280954.HPO_05447	6.138e-111	373.0	COG3917@1|root,COG3917@2|Bacteria,1MV6E@1224|Proteobacteria,2TVJ4@28211|Alphaproteobacteria,43XJT@69657|Hyphomonadaceae	28211|Alphaproteobacteria	Q	DSBA-like thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	DSBA
DYD3_k127_1113627_3	1415780.JPOG01000001_gene2515	7.157e-107	357.0	COG1234@1|root,COG1234@2|Bacteria,1R64Z@1224|Proteobacteria,1S1KW@1236|Gammaproteobacteria,1X742@135614|Xanthomonadales	135614|Xanthomonadales	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2
DYD3_k127_1113627_4	1282876.BAOK01000002_gene329	1.148e-71	249.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,2U2TN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_11269_3	395963.Bind_1705	5.016e-54	196.0	COG1853@1|root,COG1853@2|Bacteria,1N0UE@1224|Proteobacteria,2UCSU@28211|Alphaproteobacteria,3NCZ1@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
DYD3_k127_11269_1	509190.Cseg_3853	2.396e-127	415.0	COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,2TR65@28211|Alphaproteobacteria,2KF1I@204458|Caulobacterales	204458|Caulobacterales	P	cation diffusion facilitator family transporter	-	-	-	ko:K16264	-	-	-	-	ko00000,ko02000	2.A.4.1	-	-	Cation_efflux
DYD3_k127_11269_8	1449049.JONW01000005_gene1547	2.177e-09	59.0	COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,2TR65@28211|Alphaproteobacteria,2KF1I@204458|Caulobacterales	204458|Caulobacterales	P	cation diffusion facilitator family transporter	-	-	-	ko:K16264	-	-	-	-	ko00000,ko02000	2.A.4.1	-	-	Cation_efflux
DYD3_k127_11269_0	1121033.AUCF01000028_gene380	2.041e-190	621.0	COG2366@1|root,COG2366@2|Bacteria,1MVMH@1224|Proteobacteria,2TS4D@28211|Alphaproteobacteria,2JPR8@204441|Rhodospirillales	204441|Rhodospirillales	S	Penicillin amidase	-	-	3.5.1.11	ko:K01434	ko00311,ko01130,map00311,map01130	-	R02170	RC00166,RC00328	ko00000,ko00001,ko01000,ko01002	-	-	-	Penicil_amidase
DYD3_k127_11269_5	1380394.JADL01000005_gene5603	5.468e-33	133.0	COG4319@1|root,COG4319@2|Bacteria,1MZK9@1224|Proteobacteria,2U5AR@28211|Alphaproteobacteria,2JTW8@204441|Rhodospirillales	204441|Rhodospirillales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_3
DYD3_k127_11269_4	666684.AfiDRAFT_2457	2.714e-34	139.0	COG0457@1|root,COG4729@1|root,COG0457@2|Bacteria,COG4729@2|Bacteria,1N0MH@1224|Proteobacteria,2UBYG@28211|Alphaproteobacteria,3JYVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1850)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1850
DYD3_k127_11269_6	69328.PVLB_21690	1.018e-20	105.0	COG0782@1|root,COG0782@2|Bacteria,1RHU5@1224|Proteobacteria,1SB59@1236|Gammaproteobacteria	1236|Gammaproteobacteria	J	Elongation factor	greB2	-	-	-	-	-	-	-	-	-	-	-	GreA_GreB
DYD3_k127_11269_2	1430440.MGMSRv2_2165	3.17e-114	377.0	COG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,2TQY9@28211|Alphaproteobacteria,2JQJ8@204441|Rhodospirillales	204441|Rhodospirillales	S	transport system, fused permease components	-	-	-	-	-	-	-	-	-	-	-	-	DctM
DYD3_k127_1138009_3	1121033.AUCF01000006_gene4256	3.072e-45	166.0	COG0379@1|root,COG0379@2|Bacteria,1MWQU@1224|Proteobacteria,2TRPG@28211|Alphaproteobacteria,2JRG4@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate	nadA	-	2.5.1.72	ko:K03517	ko00760,ko01100,map00760,map01100	M00115	R04292	RC01119	ko00000,ko00001,ko00002,ko01000	-	-	-	NadA
DYD3_k127_1138009_0	1121033.AUCF01000006_gene4257	3.143e-138	458.0	COG0029@1|root,COG0029@2|Bacteria,1RBQW@1224|Proteobacteria,2TS0E@28211|Alphaproteobacteria,2JPUG@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the oxidation of L-aspartate to iminoaspartate	nadB	-	1.4.3.16	ko:K00278	ko00250,ko00760,ko01100,map00250,map00760,map01100	M00115	R00357,R00481	RC00006,RC02566	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_2,Succ_DH_flav_C
DYD3_k127_1138009_1	1238182.C882_1292	5.24e-99	332.0	COG0157@1|root,COG0157@2|Bacteria,1MW0C@1224|Proteobacteria,2TS7C@28211|Alphaproteobacteria,2JPCM@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the NadC ModD family	nadC	-	2.4.2.19	ko:K00767	ko00760,ko01100,map00760,map01100	M00115	R03348	RC02877	ko00000,ko00001,ko00002,ko01000	-	-	-	QRPTase_C,QRPTase_N
DYD3_k127_1138009_2	1116369.KB890024_gene3987	2.566e-62	226.0	COG0392@1|root,COG2898@1|root,COG0392@2|Bacteria,COG2898@2|Bacteria,1MXH9@1224|Proteobacteria,2TUMC@28211|Alphaproteobacteria,43HSS@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Uncharacterised conserved protein (DUF2156)	MA20_08250	-	2.3.2.3	ko:K07027,ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	M00726	-	-	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	2.A.1.3.37,4.D.2	-	-	DUF2156,LPG_synthase_TM
DYD3_k127_1147182_4	402881.Plav_0150	1.144e-13	84.0	COG0283@1|root,COG0283@2|Bacteria,1MUUD@1224|Proteobacteria,2U71H@28211|Alphaproteobacteria,1JNX4@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Cytidylate kinase	cmk	GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	2.7.4.25	ko:K00945	ko00240,ko01100,map00240,map01100	M00052	R00158,R00512,R01665	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Cytidylate_kin
DYD3_k127_1147182_0	1279038.KB907346_gene3235	4.942e-178	567.0	COG0128@1|root,COG0128@2|Bacteria,1MWMK@1224|Proteobacteria,2TR6W@28211|Alphaproteobacteria,2JPAD@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	aroA	-	2.5.1.19	ko:K00800	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03460	RC00350	ko00000,ko00001,ko00002,ko01000	-	-	-	EPSP_synthase
DYD3_k127_1147182_3	1244869.H261_13639	2.922e-14	79.0	COG4530@1|root,COG4530@2|Bacteria,1PW2T@1224|Proteobacteria,2VAKN@28211|Alphaproteobacteria,2JTVP@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (FYDLN_acid)	-	-	-	-	-	-	-	-	-	-	-	-	FYDLN_acid
DYD3_k127_1147182_1	1168059.KB899087_gene777	5.273e-83	281.0	COG2236@1|root,COG2236@2|Bacteria,1MWNE@1224|Proteobacteria,2TUXK@28211|Alphaproteobacteria,3F0WR@335928|Xanthobacteraceae	28211|Alphaproteobacteria	F	Phosphoribosyl transferase domain	gpt	-	2.4.2.22	ko:K00769	ko00230,ko01100,ko01110,map00230,map01100,map01110	-	R01229,R02142	RC00063,RC00122	ko00000,ko00001,ko01000	-	-	-	Pribosyltran
DYD3_k127_1147182_2	1150469.RSPPHO_02296	1.12e-59	210.0	COG0071@1|root,COG0071@2|Bacteria,1R9Y1@1224|Proteobacteria,2UA1J@28211|Alphaproteobacteria,2JSTN@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the small heat shock protein (HSP20) family	-	-	-	-	-	-	-	-	-	-	-	-	HSP20
DYD3_k127_1147182_5	1123060.JONP01000010_gene2228	1.424e-11	68.0	COG5568@1|root,COG5568@2|Bacteria	2|Bacteria	S	Protein of unknown function (DUF1150)	MA20_24245	-	-	-	-	-	-	-	-	-	-	-	DUF1150
DYD3_k127_1161748_4	1035191.HMPREF0185_02783	4.674e-40	164.0	COG3524@1|root,COG3524@2|Bacteria,1R3ZY@1224|Proteobacteria,2U0I2@28211|Alphaproteobacteria,2KIKG@204458|Caulobacterales	204458|Caulobacterales	M	Chain length determinant protein	-	-	-	ko:K10107	ko02010,map02010	M00249	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.101	-	-	-
DYD3_k127_1161748_1	519989.ECTPHS_04808	9.776e-123	414.0	COG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,1RQSM@1236|Gammaproteobacteria,1WXP1@135613|Chromatiales	135613|Chromatiales	M	polysaccharide export	-	-	-	-	-	-	-	-	-	-	-	-	Poly_export,SLBB
DYD3_k127_1161748_0	1283300.ATXB01000001_gene2335	6.318e-177	582.0	COG1216@1|root,COG2120@1|root,COG1216@2|Bacteria,COG2120@2|Bacteria,1MX5Z@1224|Proteobacteria,1RMDY@1236|Gammaproteobacteria,1XDIU@135618|Methylococcales	135618|Methylococcales	H	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2,Methyltransf_24
DYD3_k127_1161748_2	460265.Mnod_2750	2.307e-84	305.0	COG0438@1|root,COG0438@2|Bacteria,1QY9V@1224|Proteobacteria,2TYQQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4
DYD3_k127_1161748_8	1122176.KB903619_gene5302	2.307e-10	74.0	COG0500@1|root,COG2226@2|Bacteria,4P4Z8@976|Bacteroidetes	976|Bacteroidetes	Q	Sulfotransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_2
DYD3_k127_1161748_7	696747.NIES39_J05200	9.581e-13	78.0	COG4122@1|root,COG4122@2|Bacteria,1GQYW@1117|Cyanobacteria,1HG6G@1150|Oscillatoriales	1117|Cyanobacteria	S	Sulfotransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_2
DYD3_k127_1161748_6	1038858.AXBA01000017_gene1097	8.36e-14	81.0	COG0438@1|root,COG0438@2|Bacteria,1PPCI@1224|Proteobacteria,2V1V3@28211|Alphaproteobacteria,3F201@335928|Xanthobacteraceae	2|Bacteria	M	Sulfotransferase family	-	-	2.4.1.337	ko:K19002	ko00561,ko01100,map00561,map01100	-	R10850	RC00005,RC00059	ko00000,ko00001,ko01000,ko01003	-	GT4	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2
DYD3_k127_1161748_3	460265.Mnod_2749	6.426e-80	284.0	COG0500@1|root,COG2226@2|Bacteria,1NDCX@1224|Proteobacteria,2UGNZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_1161748_5	460265.Mnod_2746	1.598e-23	115.0	COG0457@1|root,COG0457@2|Bacteria,1RIYN@1224|Proteobacteria,2UK8N@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SGNH hydrolase-like domain, acetyltransferase AlgX	-	-	-	-	-	-	-	-	-	-	-	-	ALGX
DYD3_k127_1165909_1	1430440.MGMSRv2_2164	1.191e-124	411.0	COG2358@1|root,COG2358@2|Bacteria,1MXW1@1224|Proteobacteria,2TSK2@28211|Alphaproteobacteria,2JSYF@204441|Rhodospirillales	204441|Rhodospirillales	S	transport system periplasmic component	-	-	-	ko:K07080	-	-	-	-	ko00000	-	-	-	NMT1_3
DYD3_k127_1165909_0	1430440.MGMSRv2_2165	2.961e-177	566.0	COG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,2TQY9@28211|Alphaproteobacteria,2JQJ8@204441|Rhodospirillales	204441|Rhodospirillales	S	transport system, fused permease components	-	-	-	-	-	-	-	-	-	-	-	-	DctM
DYD3_k127_1173034_4	1038860.AXAP01000008_gene5910	2.49e-123	406.0	COG0446@1|root,COG0446@2|Bacteria,1NR3M@1224|Proteobacteria,2U2VC@28211|Alphaproteobacteria,3JVVI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Reductase C-terminal	-	-	1.18.1.3	ko:K00529	ko00071,ko00360,ko01120,ko01220,map00071,map00360,map01120,map01220	M00545	R02000,R06782,R06783	RC00098	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Pyr_redox_2,Reductase_C
DYD3_k127_1173034_1	1297865.APJD01000026_gene2569	2.293e-211	662.0	COG4638@1|root,COG4638@2|Bacteria,1N6MJ@1224|Proteobacteria,2TV8C@28211|Alphaproteobacteria,3K651@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	1.14.12.25	ko:K10619	ko00622,ko01120,ko01220,map00622,map01120,map01220	M00539	R05247	RC00267	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_1173034_9	1297865.APJD01000026_gene2570	2.643e-69	239.0	COG5517@1|root,COG5517@2|Bacteria,1RCT2@1224|Proteobacteria,2U8ZF@28211|Alphaproteobacteria,3JZ1I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Ring hydroxylating beta subunit	-	-	1.14.12.25	ko:K16303	ko00622,ko01120,ko01220,map00622,map01120,map01220	M00539	R05247	RC00267	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Ring_hydroxyl_B
DYD3_k127_1173034_7	1297865.APJD01000026_gene2571	1.287e-105	347.0	COG1028@1|root,COG1028@2|Bacteria,1MW50@1224|Proteobacteria,2TRUZ@28211|Alphaproteobacteria,3JVT7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	1.3.1.58	ko:K10620	ko00622,ko01120,ko01220,map00622,map01120,map01220	M00539	R05240	RC00057	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
DYD3_k127_1173034_12	936455.KI421499_gene730	2.496e-36	145.0	COG2146@1|root,COG2146@2|Bacteria,1NCKX@1224|Proteobacteria,2UCFA@28211|Alphaproteobacteria,3K05Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske-like [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
DYD3_k127_1173034_10	936455.KI421499_gene729	6.892e-68	237.0	COG1309@1|root,COG1309@2|Bacteria,1RAF9@1224|Proteobacteria,2U62G@28211|Alphaproteobacteria,3K0SV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_1173034_8	1297865.APJD01000026_gene2574	1.171e-88	306.0	COG0346@1|root,COG0346@2|Bacteria,1RBGG@1224|Proteobacteria,2U64T@28211|Alphaproteobacteria,3JY2A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
DYD3_k127_1173034_3	1297865.APJD01000026_gene2575	1.281e-131	437.0	COG0346@1|root,COG0346@2|Bacteria,1MXNZ@1224|Proteobacteria,2VG67@28211|Alphaproteobacteria,3JXZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
DYD3_k127_1173034_5	231434.JQJH01000032_gene3390	4.54e-123	399.0	COG2267@1|root,COG2267@2|Bacteria,1P3EB@1224|Proteobacteria,2U6Y5@28211|Alphaproteobacteria,3NCKY@45404|Beijerinckiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_1173034_6	395965.Msil_1477	4.508e-117	384.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TUWC@28211|Alphaproteobacteria,3NC67@45404|Beijerinckiaceae	28211|Alphaproteobacteria	Q	hydratase'	-	-	4.2.1.80	ko:K02554	ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R02601,R04781	RC00750,RC01213	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_1173034_0	1123256.KB907945_gene356	0.0	1073.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,1RN01@1236|Gammaproteobacteria,1X5AZ@135614|Xanthomonadales	135614|Xanthomonadales	S	MMPL family	-	-	-	-	-	-	-	-	-	-	-	-	MMPL
DYD3_k127_1173034_2	247639.MGP2080_12155	6.062e-196	621.0	2C4IG@1|root,2Z8DE@2|Bacteria,1P2M2@1224|Proteobacteria,1S011@1236|Gammaproteobacteria,1J5ID@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_1173034_11	1122604.JONR01000021_gene553	8.417e-49	183.0	COG4447@1|root,COG4447@2|Bacteria,1RF2F@1224|Proteobacteria,1S5HY@1236|Gammaproteobacteria,1X97U@135614|Xanthomonadales	135614|Xanthomonadales	S	protein related to plant photosystem II stability assembly factor	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1193326_0	1238182.C882_1217	0.0	1278.0	COG0646@1|root,COG1410@1|root,COG0646@2|Bacteria,COG1410@2|Bacteria,1MV6G@1224|Proteobacteria,2TQTG@28211|Alphaproteobacteria,2JQ1S@204441|Rhodospirillales	204441|Rhodospirillales	E	Methionine synthase	metH	-	2.1.1.13	ko:K00548	ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230	M00017	R00946,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	B12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans
DYD3_k127_1193326_1	1304877.KI519399_gene6160	1.786e-63	221.0	COG0530@1|root,COG0530@2|Bacteria,1PW8G@1224|Proteobacteria,2U168@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	COG0530 Ca2 Na antiporter	-	-	-	ko:K07301	-	-	-	-	ko00000,ko02000	2.A.19.5	-	-	Na_Ca_ex
DYD3_k127_1227673_6	1123229.AUBC01000005_gene615	3.256e-125	412.0	COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TU6U@28211|Alphaproteobacteria,3K6I4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glutamine synthetase, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	Gln-synt_C
DYD3_k127_1227673_17	472175.EL18_01901	5.261e-73	251.0	COG1335@1|root,COG1335@2|Bacteria,1QQBV@1224|Proteobacteria,2U44E@28211|Alphaproteobacteria,43R6W@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_1227673_14	1089551.KE386572_gene2675	1.998e-83	281.0	COG0317@1|root,COG0317@2|Bacteria,1RKVU@1224|Proteobacteria,2VGQH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	HD domain	-	-	-	-	-	-	-	-	-	-	-	-	HD_4
DYD3_k127_1227673_0	1333998.M2A_2622	2.535e-318	985.0	COG1154@1|root,COG1154@2|Bacteria,1MUSJ@1224|Proteobacteria,2TRDD@28211|Alphaproteobacteria,4BP5K@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)	dxs	-	2.2.1.7	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	M00096	R05636	RC00032	ko00000,ko00001,ko00002,ko01000	-	-	-	DXP_synthase_N,Transket_pyr,Transketolase_C
DYD3_k127_1227673_9	1121033.AUCF01000004_gene4975	3.037e-109	361.0	COG0142@1|root,COG0142@2|Bacteria,1MWNG@1224|Proteobacteria,2TR79@28211|Alphaproteobacteria,2JQDQ@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the FPP GGPP synthase family	ispA	-	2.5.1.1,2.5.1.10	ko:K00795	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364	R01658,R02003	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	polyprenyl_synt
DYD3_k127_1227673_23	1205680.CAKO01000014_gene104	6.899e-21	98.0	COG1722@1|root,COG1722@2|Bacteria,1PTYQ@1224|Proteobacteria,2UFD6@28211|Alphaproteobacteria,2JU6S@204441|Rhodospirillales	204441|Rhodospirillales	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	xseB	-	3.1.11.6	ko:K03602	ko03430,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_VII_S
DYD3_k127_1227673_3	438753.AZC_2220	1.122e-161	524.0	COG0463@1|root,COG0463@2|Bacteria,1MXC1@1224|Proteobacteria,2TVY5@28211|Alphaproteobacteria,3F2DR@335928|Xanthobacteraceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1227673_7	1121033.AUCF01000004_gene4973	8.362e-119	390.0	COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2TSX9@28211|Alphaproteobacteria,2JPCE@204441|Rhodospirillales	204441|Rhodospirillales	BQ	COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein	-	-	-	-	-	-	-	-	-	-	-	-	Hist_deacetyl
DYD3_k127_1227673_5	1144275.COCOR_04905	1.142e-126	411.0	COG1028@1|root,COG1028@2|Bacteria,1MUSQ@1224|Proteobacteria,42YTV@68525|delta/epsilon subdivisions,2WTY1@28221|Deltaproteobacteria,2YYUF@29|Myxococcales	28221|Deltaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	ko:K13775	ko00281,map00281	-	R08087,R08096,R10125,R10126	RC00080,RC00087	ko00000,ko00001	-	-	-	adh_short
DYD3_k127_1227673_15	267608.RSc0476	1.465e-79	274.0	COG1024@1|root,COG1024@2|Bacteria,1Q67Q@1224|Proteobacteria,2VJC1@28216|Betaproteobacteria,1JZXT@119060|Burkholderiaceae	28216|Betaproteobacteria	I	enoyl-CoA hydratase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_1227673_22	1318628.MARLIPOL_15989	3.703e-30	124.0	COG1846@1|root,COG1846@2|Bacteria,1RM6J@1224|Proteobacteria,1SB9Z@1236|Gammaproteobacteria,46C5W@72275|Alteromonadaceae	1236|Gammaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_1227673_8	1382303.JPOM01000001_gene1378	1.345e-111	369.0	COG0491@1|root,COG0491@2|Bacteria,1MUXF@1224|Proteobacteria,2TSYY@28211|Alphaproteobacteria,2KFGU@204458|Caulobacterales	204458|Caulobacterales	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_1227673_11	1382303.JPOM01000001_gene1331	1.229e-90	321.0	COG1819@1|root,COG1819@2|Bacteria,1QWRW@1224|Proteobacteria,2TV30@28211|Alphaproteobacteria,2KHIN@204458|Caulobacterales	204458|Caulobacterales	CG	UDP-glucoronosyl and UDP-glucosyl transferase	-	-	-	-	-	-	-	-	-	-	-	-	UDPGT
DYD3_k127_1227673_20	1040983.AXAE01000014_gene4990	4.403e-41	158.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_1227673_18	349102.Rsph17025_1825	5.719e-50	181.0	COG3668@1|root,COG3668@2|Bacteria,1RI5Y@1224|Proteobacteria,2UAAC@28211|Alphaproteobacteria,1FCTI@1060|Rhodobacter	28211|Alphaproteobacteria	S	PFAM plasmid	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_1227673_21	935565.JAEM01000013_gene2147	3.794e-36	147.0	COG3609@1|root,COG3609@2|Bacteria,1N2U3@1224|Proteobacteria,2UC2F@28211|Alphaproteobacteria,2PXGG@265|Paracoccus	28211|Alphaproteobacteria	K	addiction module	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1227673_4	420324.KI912045_gene4560	3.745e-133	428.0	COG4312@1|root,COG4312@2|Bacteria,1QIBA@1224|Proteobacteria,2TTFP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF899)	-	-	-	-	-	-	-	-	-	-	-	-	DUF899
DYD3_k127_1227673_1	414684.RC1_1632	4.695e-208	662.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQJS@28211|Alphaproteobacteria,2JPIV@204441|Rhodospirillales	204441|Rhodospirillales	I	COG1960 Acyl-CoA dehydrogenases	-	-	-	ko:K20035	ko00920,map00920	-	R11130	RC03363	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N
DYD3_k127_1227673_10	1089551.KE386572_gene2092	8.995e-100	336.0	COG0009@1|root,COG0009@2|Bacteria,1MVPM@1224|Proteobacteria,2TRIM@28211|Alphaproteobacteria,4BPA0@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine	sua5	GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363	2.7.7.87	ko:K07566	-	-	R10463	RC00745	ko00000,ko01000,ko03009,ko03016	-	-	-	SUA5,Sua5_yciO_yrdC
DYD3_k127_1227673_2	85643.Tmz1t_3118	3.073e-162	523.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2VH5A@28216|Betaproteobacteria,2KV7J@206389|Rhodocyclales	206389|Rhodocyclales	C	glycolate oxidase subunit GlcD	-	-	-	-	-	-	-	-	-	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_1227673_16	1110502.TMO_1186	3.289e-77	271.0	COG1409@1|root,COG1409@2|Bacteria,1QI4K@1224|Proteobacteria,2TV5Q@28211|Alphaproteobacteria,2JWVQ@204441|Rhodospirillales	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
DYD3_k127_1227673_13	1123261.AXDW01000001_gene1058	2.427e-85	293.0	COG0451@1|root,COG0451@2|Bacteria,1MW32@1224|Proteobacteria,1SYQK@1236|Gammaproteobacteria,1X462@135614|Xanthomonadales	135614|Xanthomonadales	M	Male sterility protein	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
DYD3_k127_1227673_19	78245.Xaut_3264	8.771e-49	182.0	COG0454@1|root,COG0456@2|Bacteria,1RA6D@1224|Proteobacteria,2UC27@28211|Alphaproteobacteria,3EZU6@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	FR47-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_1227673_12	402881.Plav_0764	3.657e-90	304.0	COG1028@1|root,COG1028@2|Bacteria,1MWGK@1224|Proteobacteria,2TVQ8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	MA20_16385	-	1.1.1.69	ko:K00046	-	-	-	-	ko00000,ko01000	-	-	-	adh_short_C2
DYD3_k127_1227673_24	1380391.JIAS01000011_gene4777	8.964e-18	86.0	COG0429@1|root,COG0429@2|Bacteria,1MWV1@1224|Proteobacteria,2TSMR@28211|Alphaproteobacteria,2JRNA@204441|Rhodospirillales	204441|Rhodospirillales	S	alpha/beta hydrolase fold	-	-	-	ko:K07019	-	-	-	-	ko00000	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_1229980_16	1238182.C882_2083	1.74e-08	56.0	COG0266@1|root,COG0266@2|Bacteria,1MVM5@1224|Proteobacteria,2TS4C@28211|Alphaproteobacteria,2JPMQ@204441|Rhodospirillales	204441|Rhodospirillales	L	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates	fpg	-	3.2.2.23,4.2.99.18	ko:K10563	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Fapy_DNA_glyco,H2TH,zf-FPG_IleRS
DYD3_k127_1229980_0	1120792.JAFV01000001_gene1439	4.643e-282	878.0	COG3829@1|root,COG3829@2|Bacteria,1NU8B@1224|Proteobacteria,2TW3X@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	PFAM sigma-54 factor interaction domain-containing protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_8,PAS,PAS_8,PAS_9,Sigma54_activat
DYD3_k127_1229980_1	1429916.X566_24200	1.319e-230	722.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,3JRD6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	nrtA	-	-	ko:K15576	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16.1,3.A.1.16.2	-	-	NMT1_2
DYD3_k127_1229980_8	1101192.KB910516_gene3742	5.661e-134	432.0	COG0600@1|root,COG0600@2|Bacteria,1MU6Q@1224|Proteobacteria,2TQT6@28211|Alphaproteobacteria,1JQTA@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	TIGRFAM nitrate ABC transporter, inner membrane subunit	nrtB	-	-	ko:K02050,ko:K15577	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.16.2,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_1229980_7	1126627.BAWE01000005_gene5468	6.879e-136	438.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TUIC@28211|Alphaproteobacteria,3JW0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	cmpD	-	-	ko:K02049,ko:K15578	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.17	-	-	ABC_tran
DYD3_k127_1229980_13	460265.Mnod_1707	1.083e-73	250.0	COG1513@1|root,COG1513@2|Bacteria,1R9X0@1224|Proteobacteria,2TQYR@28211|Alphaproteobacteria,1JR3F@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide	cynS	-	4.2.1.104	ko:K01725	ko00910,map00910	-	R03546,R10079	RC00952	ko00000,ko00001,ko01000	-	-	-	Cyanate_lyase
DYD3_k127_1229980_5	224911.27355264	3.748e-157	505.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JTME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	ko:K18372	ko00640,map00640	-	R10705	RC00460,RC00461	ko00000,ko00001,ko01000	-	-	-	Beta-lactamase,DUF3471
DYD3_k127_1229980_12	1177928.TH2_03920	1.482e-102	340.0	COG0500@1|root,COG2226@2|Bacteria,1MX8I@1224|Proteobacteria,2TRWR@28211|Alphaproteobacteria,2JPTX@204441|Rhodospirillales	204441|Rhodospirillales	H	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)	ubiE	-	2.1.1.163,2.1.1.201	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116,M00117	R04990,R04993,R06859,R08774,R09736	RC00003,RC01253,RC01662	ko00000,ko00001,ko00002,ko01000	-	-	-	Ubie_methyltran
DYD3_k127_1229980_6	1150626.PHAMO_510107	3.315e-155	505.0	COG0661@1|root,COG0661@2|Bacteria,1MU1Z@1224|Proteobacteria,2TS87@28211|Alphaproteobacteria,2JPWB@204441|Rhodospirillales	204441|Rhodospirillales	S	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis	ubiB	-	-	ko:K03688	-	-	-	-	ko00000	-	-	-	ABC1
DYD3_k127_1229980_11	399739.Pmen_2543	1.827e-103	346.0	COG2207@1|root,COG2207@2|Bacteria,1RH01@1224|Proteobacteria,1S57M@1236|Gammaproteobacteria,1YF4A@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_1229980_10	399739.Pmen_2542	7.414e-125	428.0	COG0543@1|root,COG1018@1|root,COG0543@2|Bacteria,COG1018@2|Bacteria,1MV72@1224|Proteobacteria,1T4D8@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	Oxidoreductase FAD-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DHODB_Fe-S_bind,FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_1229980_2	1123020.AUIE01000010_gene1122	2.661e-189	617.0	COG3239@1|root,COG3239@2|Bacteria,1MW29@1224|Proteobacteria,1RPHS@1236|Gammaproteobacteria,1YGW9@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	I	Fatty acid desaturase	alkB	-	1.14.15.3	ko:K00496	ko00071,ko00930,map00071,map00930	-	R01347,R02281,R06945	RC00478	ko00000,ko00001,ko01000	-	-	-	FA_desaturase
DYD3_k127_1229980_3	1333998.M2A_0338	2.435e-172	549.0	COG0452@1|root,COG0452@2|Bacteria,1MVQP@1224|Proteobacteria,2TRN1@28211|Alphaproteobacteria,4BPBM@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine	coaBC	-	4.1.1.36,6.3.2.5	ko:K13038,ko:K21977	ko00770,ko01100,map00770,map01100	M00120	R03269,R04231	RC00064,RC00090,RC00822	ko00000,ko00001,ko00002,ko01000	-	-	-	DFP,Flavoprotein
DYD3_k127_1229980_15	1333998.M2A_0336	8.565e-55	207.0	COG1959@1|root,COG1959@2|Bacteria,1RIJ8@1224|Proteobacteria,2U744@28211|Alphaproteobacteria,4BSMZ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Rrf2
DYD3_k127_1229980_4	1211115.ALIQ01000139_gene1300	1.484e-157	501.0	COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,2TS33@28211|Alphaproteobacteria,3N9Q8@45404|Beijerinckiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	cysK	-	2.5.1.47	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R03601,R04859	RC00020,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
DYD3_k127_1229980_9	1030157.AFMP01000042_gene1307	6.169e-128	414.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,2U149@28211|Alphaproteobacteria,2K2UZ@204457|Sphingomonadales	204457|Sphingomonadales	IQ	KR domain	-	-	-	ko:K13774	ko00281,map00281	-	R08087,R08096,R10125,R10126	RC00080,RC00087	ko00000,ko00001	-	-	-	adh_short_C2
DYD3_k127_1229980_14	766499.C357_03870	9.871e-67	235.0	COG3185@1|root,COG3185@2|Bacteria,1MVR0@1224|Proteobacteria,2TTAD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Acyclic terpene utilisation family protein AtuA	-	-	-	-	-	-	-	-	-	-	-	-	AtuA
DYD3_k127_1270901_4	1461694.ATO9_04275	7.44e-31	127.0	2CIZA@1|root,32S8U@2|Bacteria,1N29D@1224|Proteobacteria,2UEH4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1270901_1	1430440.MGMSRv2_2902	1.598e-91	308.0	COG0289@1|root,COG0289@2|Bacteria,1MUCT@1224|Proteobacteria,2TSFJ@28211|Alphaproteobacteria,2JPX3@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate	dapB	-	1.17.1.8	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R04198,R04199	RC00478	ko00000,ko00001,ko00002,ko01000	-	-	-	DapB_C,DapB_N
DYD3_k127_1270901_0	1207063.P24_02486	1.952e-136	446.0	COG0635@1|root,COG0635@2|Bacteria,1MU76@1224|Proteobacteria,2TT63@28211|Alphaproteobacteria,2JPKK@204441|Rhodospirillales	204441|Rhodospirillales	H	Involved in the biosynthesis of porphyrin-containing compound	-	-	-	-	-	-	-	-	-	-	-	-	HemN_C,Radical_SAM
DYD3_k127_1270901_3	350058.Mvan_3315	3.464e-57	205.0	COG3153@1|root,COG3153@2|Bacteria,2IKX0@201174|Actinobacteria,23C56@1762|Mycobacteriaceae	201174|Actinobacteria	S	acetyltransferase	-	-	-	ko:K03824,ko:K09964	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_1,Acetyltransf_7,Acetyltransf_9
DYD3_k127_1270901_2	1333998.M2A_0258	4.282e-67	231.0	COG0127@1|root,COG0127@2|Bacteria,1MUK5@1224|Proteobacteria,2TV4B@28211|Alphaproteobacteria,4BQ7G@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions	rdgB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576	3.6.1.66	ko:K02428	ko00230,map00230	-	R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000	-	-	-	Ham1p_like
DYD3_k127_1282463_4	114615.BRADO1531	5.109e-47	171.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TU7H@28211|Alphaproteobacteria,3JSWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
DYD3_k127_1282463_0	1123229.AUBC01000013_gene2611	3.09e-309	973.0	COG0154@1|root,COG0410@1|root,COG0154@2|Bacteria,COG0410@2|Bacteria,1MUVQ@1224|Proteobacteria,2TU7H@28211|Alphaproteobacteria,3JSWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	ABC_tran,Amidase
DYD3_k127_1282463_3	1305735.JAFT01000005_gene2522	5.829e-104	344.0	COG4674@1|root,COG4674@2|Bacteria,1PHYH@1224|Proteobacteria,2TVYS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ABC transporter	-	-	-	ko:K01995,ko:K11962	ko02010,ko02024,map02010,map02024	M00237,M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4,3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran,BCA_ABC_TP_C
DYD3_k127_1282463_1	1305735.JAFT01000005_gene2521	4.276e-122	408.0	COG4177@1|root,COG4177@2|Bacteria,1MWRD@1224|Proteobacteria,2TS03@28211|Alphaproteobacteria,2PFDV@252301|Oceanicola	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01998,ko:K11961	ko02010,ko02024,map02010,map02024	M00237,M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4,3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
DYD3_k127_1282463_2	1305735.JAFT01000005_gene2520	1.305e-121	396.0	COG0559@1|root,COG0559@2|Bacteria,1P4N0@1224|Proteobacteria,2U1CE@28211|Alphaproteobacteria,2PF98@252301|Oceanicola	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01997,ko:K11960	ko02010,ko02024,map02010,map02024	M00237,M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4,3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
DYD3_k127_1288053_1	395964.KE386496_gene1447	7.549e-126	409.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TTAK@28211|Alphaproteobacteria,3NAEJ@45404|Beijerinckiaceae	28211|Alphaproteobacteria	H	Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide	bioF	-	2.3.1.47	ko:K00652	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R03210,R10124	RC00004,RC00039,RC02725	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_1288053_7	648885.KB316283_gene3544	3.587e-43	168.0	COG0132@1|root,COG0132@2|Bacteria,1RDRK@1224|Proteobacteria,2U5AJ@28211|Alphaproteobacteria,1JRX7@119045|Methylobacteriaceae	28211|Alphaproteobacteria	H	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring	bioD	GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.1.197,6.3.3.3	ko:K01935,ko:K02169	ko00780,ko01100,map00780,map01100	M00123,M00572,M00573,M00577	R03182,R09543	RC00003,RC00460,RC00868	ko00000,ko00001,ko00002,ko01000	-	-	-	AAA_26
DYD3_k127_1288053_9	509190.Cseg_2897	2.691e-40	158.0	COG5352@1|root,COG5352@2|Bacteria,1RHI6@1224|Proteobacteria,2TS7F@28211|Alphaproteobacteria,2KGJW@204458|Caulobacterales	204458|Caulobacterales	S	PFAM GcrA cell cycle regulator	-	-	-	ko:K13583	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	GcrA
DYD3_k127_1288053_8	1149133.ppKF707_4767	6.674e-43	166.0	COG0406@1|root,COG0406@2|Bacteria,1R62X@1224|Proteobacteria,1SUXX@1236|Gammaproteobacteria,1YKCS@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	G	Histidine phosphatase superfamily (branch 1)	-	-	-	-	-	-	-	-	-	-	-	-	His_Phos_1
DYD3_k127_1288053_0	1380394.JADL01000002_gene1193	0.0	1267.0	COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,2TSHH@28211|Alphaproteobacteria,2JQ67@204441|Rhodospirillales	204441|Rhodospirillales	C	COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits	-	-	1.2.7.8	ko:K04090	-	-	-	-	br01601,ko00000,ko01000	-	-	-	POR,TPP_enzyme_C
DYD3_k127_1288053_6	1411123.JQNH01000001_gene3480	2.822e-46	169.0	COG0251@1|root,COG0251@2|Bacteria,1MZ5K@1224|Proteobacteria,2U9DU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_1288053_2	243160.BMA0055	1.961e-69	245.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2VM7N@28216|Betaproteobacteria,1KGR4@119060|Burkholderiaceae	28216|Betaproteobacteria	K	LysR substrate binding domain	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1288053_5	1430440.MGMSRv2_2831	4.141e-51	202.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,2TVIP@28211|Alphaproteobacteria,2JRYV@204441|Rhodospirillales	204441|Rhodospirillales	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	2CSK_N,HATPase_c,HisKA
DYD3_k127_1288053_3	1230476.C207_06380	6.758e-62	220.0	COG0745@1|root,COG0745@2|Bacteria,1NCKY@1224|Proteobacteria,2TRPQ@28211|Alphaproteobacteria,3JVV7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1288053_10	1150626.PHAMO_260018	1.69e-18	88.0	COG5591@1|root,COG5591@2|Bacteria,1N6RP@1224|Proteobacteria,2UFFA@28211|Alphaproteobacteria,2JUQY@204441|Rhodospirillales	204441|Rhodospirillales	S	Peptidase propeptide and YPEB domain	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_2
DYD3_k127_1288053_4	1525715.IX54_16215	2.389e-60	214.0	COG3658@1|root,COG3658@2|Bacteria,1RB03@1224|Proteobacteria,2VGBI@28211|Alphaproteobacteria,2PZ80@265|Paracoccus	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
DYD3_k127_1288053_11	414684.RC1_2437	0.0001485	45.0	COG5126@1|root,COG5126@2|Bacteria,1NH5D@1224|Proteobacteria,2UJHN@28211|Alphaproteobacteria,2JY3X@204441|Rhodospirillales	204441|Rhodospirillales	DTZ	EF-hand, calcium binding motif	-	-	-	-	-	-	-	-	-	-	-	-	EF-hand_5
DYD3_k127_1290334_0	269796.Rru_A2047	1.388e-160	512.0	COG0687@1|root,COG0687@2|Bacteria,1MU0I@1224|Proteobacteria,2TRJ3@28211|Alphaproteobacteria,2JPDW@204441|Rhodospirillales	204441|Rhodospirillales	E	Bacterial extracellular solute-binding protein	-	-	-	ko:K02055	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	SBP_bac_8
DYD3_k127_1290334_1	269796.Rru_A2048	1.365e-155	498.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,2JQQC@204441|Rhodospirillales	204441|Rhodospirillales	E	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	-	-	-	ko:K02052	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	ABC_tran,TOBE_2
DYD3_k127_1290334_4	983920.Y88_1139	4.333e-67	239.0	COG3221@1|root,COG3221@2|Bacteria,1RDG5@1224|Proteobacteria,2U8X7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	ABC transporter, phosphonate, periplasmic substrate-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	Phosphonate-bd
DYD3_k127_1290334_3	359.CN09_01120	9.807e-109	360.0	COG3239@1|root,COG3239@2|Bacteria,1MXA8@1224|Proteobacteria,2TUQG@28211|Alphaproteobacteria,4BBT9@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid desaturase	-	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase
DYD3_k127_1290334_2	1110502.TMO_1666	5.146e-119	391.0	COG1732@1|root,COG1732@2|Bacteria,1MV9N@1224|Proteobacteria,2TTY6@28211|Alphaproteobacteria,2JQK2@204441|Rhodospirillales	204441|Rhodospirillales	M	Substrate binding domain of ABC-type glycine betaine transport system	-	-	-	ko:K05845	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	OpuAC
DYD3_k127_129166_2	440512.C211_11502	2.126e-43	160.0	COG2057@1|root,COG2057@2|Bacteria,1MY3S@1224|Proteobacteria,1RP1U@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit	-	-	2.8.3.12	ko:K01040	ko00643,ko00650,ko01120,map00643,map00650,map01120	-	R04000,R05509	RC00012,RC00131,RC00137	ko00000,ko00001,ko01000	-	-	-	-
DYD3_k127_129166_1	911239.CF149_12873	1.85e-113	374.0	COG1788@1|root,COG1788@2|Bacteria,1NGS5@1224|Proteobacteria,1RQB6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit	-	-	2.8.3.12	ko:K01039	ko00643,ko00650,ko01120,map00643,map00650,map01120	-	R04000,R05509	RC00012,RC00131,RC00137	ko00000,ko00001,ko01000	-	-	-	CoA_trans
DYD3_k127_129166_0	1301098.PKB_4307	5.207e-143	462.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,1RMQ4@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	6.2.1.41	ko:K18687	ko00984,ko01100,ko01120,map00984,map01100,map01120	-	R10769	RC00004,RC00014	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_1301965_5	1244869.H261_15170	2.701e-33	131.0	COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2TU60@28211|Alphaproteobacteria,2JRS8@204441|Rhodospirillales	204441|Rhodospirillales	F	COG0518 GMP synthase - Glutamine amidotransferase domain	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
DYD3_k127_1301965_0	319003.Bra1253DRAFT_04297	1.011e-157	510.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2TQKG@28211|Alphaproteobacteria,3JYM8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CE	Isocitrate/isopropylmalate dehydrogenase	-	-	1.1.1.41	ko:K00030	ko00020,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010	R00709	RC00114	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
DYD3_k127_1301965_3	269796.Rru_A0337	3.792e-63	218.0	COG1733@1|root,COG1733@2|Bacteria,1MZ6G@1224|Proteobacteria,2UACS@28211|Alphaproteobacteria,2JTQU@204441|Rhodospirillales	204441|Rhodospirillales	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_1301965_8	935848.JAEN01000037_gene3851	6.617e-23	104.0	COG3631@1|root,COG3631@2|Bacteria,1N76G@1224|Proteobacteria,2UGFU@28211|Alphaproteobacteria,2PXBJ@265|Paracoccus	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_1301965_1	381666.H16_B1990	2.421e-105	352.0	COG1028@1|root,COG1028@2|Bacteria,1MWZE@1224|Proteobacteria,2VM9M@28216|Betaproteobacteria,1KD31@119060|Burkholderiaceae	28216|Betaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_1301965_6	269796.Rru_A0976	2.978e-32	132.0	COG2337@1|root,COG2337@2|Bacteria,1MZAV@1224|Proteobacteria,2UD15@28211|Alphaproteobacteria,2JU0B@204441|Rhodospirillales	204441|Rhodospirillales	T	PemK-like, MazF-like toxin of type II toxin-antitoxin system	-	-	-	ko:K07171	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PemK_toxin
DYD3_k127_1301965_7	1041146.ATZB01000115_gene3417	9.785e-28	116.0	2ERF2@1|root,31BVV@2|Bacteria,1Q7U0@1224|Proteobacteria,2UUH1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1301965_4	1122135.KB893135_gene763	9.555e-45	170.0	COG1670@1|root,COG1670@2|Bacteria,1RJHK@1224|Proteobacteria,2UA0T@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
DYD3_k127_1301965_2	1380391.JIAS01000006_gene2514	6.186e-80	272.0	COG1076@1|root,COG1076@2|Bacteria,1N270@1224|Proteobacteria,2TTX1@28211|Alphaproteobacteria,2JQDM@204441|Rhodospirillales	204441|Rhodospirillales	O	Tellurite resistance protein TerB	djlA	-	-	ko:K05801	-	-	-	-	ko00000,ko03110	-	-	-	DnaJ,TerB
DYD3_k127_130289_0	1380394.JADL01000010_gene4142	1.151e-130	426.0	COG0766@1|root,COG0766@2|Bacteria,1MUH7@1224|Proteobacteria,2TRPH@28211|Alphaproteobacteria,2JQG0@204441|Rhodospirillales	204441|Rhodospirillales	M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine	murA	-	2.5.1.7	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R00660	RC00350	ko00000,ko00001,ko01000,ko01011	-	-	-	EPSP_synthase
DYD3_k127_130289_1	1449076.JOOE01000001_gene2426	3.397e-106	346.0	COG0717@1|root,COG0717@2|Bacteria,1MV2J@1224|Proteobacteria,2TSDM@28211|Alphaproteobacteria,2JZVF@204457|Sphingomonadales	204457|Sphingomonadales	F	Belongs to the dCTP deaminase family	dcd	-	3.5.4.13	ko:K01494	ko00240,ko01100,map00240,map01100	M00053	R00568,R02325	RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	dUTPase
DYD3_k127_130289_2	1120792.JAFV01000001_gene2309	1.533e-29	123.0	COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,2TRWB@28211|Alphaproteobacteria,36XM8@31993|Methylocystaceae	28211|Alphaproteobacteria	EH	Anthranilate synthase component I, N terminal region	pabB	-	2.6.1.85,4.1.3.27	ko:K01657,ko:K01665	ko00400,ko00405,ko00790,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map00790,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986,R01716	RC00010,RC01418,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	Anth_synt_I_N,Chorismate_bind
DYD3_k127_1320778_3	113395.AXAI01000004_gene4270	2.337e-106	352.0	COG4221@1|root,COG4221@2|Bacteria,1QTXD@1224|Proteobacteria,2TW4Q@28211|Alphaproteobacteria,3K6KV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_1320778_8	573370.DMR_39210	6.888e-13	81.0	COG0457@1|root,COG0457@2|Bacteria,1RIYN@1224|Proteobacteria,42T31@68525|delta/epsilon subdivisions,2WPYY@28221|Deltaproteobacteria,2M990@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	SGNH hydrolase-like domain, acetyltransferase AlgX	-	-	-	-	-	-	-	-	-	-	-	-	ALGX
DYD3_k127_1320778_7	460265.Mnod_2747	2.581e-17	84.0	COG0236@1|root,COG0236@2|Bacteria	2|Bacteria	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis	-	-	-	ko:K02078	-	-	-	-	ko00000,ko00001	-	-	-	PP-binding
DYD3_k127_1320778_0	1229204.AMYY01000055_gene1045	1.079e-157	515.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TW3C@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,Thioesterase
DYD3_k127_1320778_1	1297865.APJD01000003_gene6146	4.11e-138	452.0	COG0189@1|root,COG0189@2|Bacteria,1R70M@1224|Proteobacteria,2TVHR@28211|Alphaproteobacteria,3JT4M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	HJ	ligase activity	-	-	-	-	-	-	-	-	-	-	-	-	ATP-grasp_3
DYD3_k127_1320778_5	1469613.JT55_04910	3.149e-40	160.0	COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,2TR3M@28211|Alphaproteobacteria,3FD0G@34008|Rhodovulum	28211|Alphaproteobacteria	V	HNH nucleases	MA20_20605	-	-	-	-	-	-	-	-	-	-	-	HNH,HNH_5
DYD3_k127_1320778_2	1227488.C477_18710	2.908e-128	426.0	COG1575@1|root,COG2249@1|root,arCOG00480@2157|Archaea,arCOG02577@2157|Archaea,2XT8P@28890|Euryarchaeota,23U5S@183963|Halobacteria	183963|Halobacteria	H	NADPH-quinone reductase (modulator of drug activity B)	-	-	-	-	-	-	-	-	-	-	-	-	Flavodoxin_2,UbiA
DYD3_k127_1320778_9	288000.BBta_4978	3.876e-06	52.0	COG4372@1|root,COG4372@2|Bacteria,1MUCX@1224|Proteobacteria,2TR59@28211|Alphaproteobacteria,3JT7K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS66,DDE_Tnp_IS66_C,LZ_Tnp_IS66,zf-IS66
DYD3_k127_1320778_6	402881.Plav_2146	3.274e-33	137.0	COG3686@1|root,COG3686@2|Bacteria,1N00R@1224|Proteobacteria,2U94Y@28211|Alphaproteobacteria,1JQKV@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	MAPEG family	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
DYD3_k127_1320778_4	864069.MicloDRAFT_00044040	3.073e-80	272.0	COG1230@1|root,COG1230@2|Bacteria,1MUSS@1224|Proteobacteria,2TVQN@28211|Alphaproteobacteria,1JRH0@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	PFAM Cation efflux	-	-	-	-	-	-	-	-	-	-	-	-	Cation_efflux
DYD3_k127_1321449_3	1410620.SHLA_36c000410	2.661e-50	183.0	28K85@1|root,2Z9W1@2|Bacteria,1MWB1@1224|Proteobacteria,2UQ8U@28211|Alphaproteobacteria,4BDRQ@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	TRANSCRIPTIONal	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1321449_0	266835.14026301	1.572e-294	915.0	COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2TSTW@28211|Alphaproteobacteria,43NSB@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, central domain	ilvB	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_1321449_1	59538.XP_005967768.1	7.055e-221	692.0	COG0141@1|root,KOG2697@2759|Eukaryota,39RD3@33154|Opisthokonta	33154|Opisthokonta	E	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine	-	-	1.1.1.23	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01158,R01163,R03012	RC00099,RC00242,RC00463	ko00000,ko00001,ko00002,ko01000	-	-	-	Histidinol_dh
DYD3_k127_1321449_2	1408224.SAMCCGM7_c4002	6.399e-165	529.0	COG1653@1|root,COG1653@2|Bacteria,1NSTT@1224|Proteobacteria,2UP7C@28211|Alphaproteobacteria,4B93Y@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K17315	ko02010,map02010	M00605	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.24,3.A.1.1.30	-	-	SBP_bac_1
DYD3_k127_1322261_2	1125973.JNLC01000018_gene2224	5.857e-125	407.0	COG4175@1|root,COG4175@2|Bacteria,1MU86@1224|Proteobacteria,2TS8Y@28211|Alphaproteobacteria,3K37Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Domain in cystathionine beta-synthase and other proteins.	-	-	3.6.3.32	ko:K02000	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.12	-	-	ABC_tran,CBS
DYD3_k127_1322261_1	639283.Snov_2138	2.345e-125	406.0	COG4176@1|root,COG4176@2|Bacteria,1MUM4@1224|Proteobacteria,2V8Z9@28211|Alphaproteobacteria,3F0QJ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02001	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1
DYD3_k127_1322261_0	639283.Snov_2139	7.289e-126	407.0	COG2113@1|root,COG2113@2|Bacteria,1MVIG@1224|Proteobacteria,2TRV8@28211|Alphaproteobacteria,3F0ZX@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Substrate binding domain of ABC-type glycine betaine transport system	-	-	-	ko:K02002	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	OpuAC
DYD3_k127_1323539_5	1079460.ATTQ01000002_gene5324	1.788e-81	276.0	COG1309@1|root,COG1309@2|Bacteria,1PH1P@1224|Proteobacteria,2V7Y4@28211|Alphaproteobacteria,4BH92@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
DYD3_k127_1323539_4	1123393.KB891317_gene2340	1.809e-98	331.0	COG1477@1|root,COG1477@2|Bacteria,1MW6K@1224|Proteobacteria,2VPGP@28216|Betaproteobacteria	28216|Betaproteobacteria	H	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein	-	-	2.7.1.180	ko:K03734	-	-	-	-	ko00000,ko01000	-	-	-	ApbE,NqrM
DYD3_k127_1323539_1	571166.KI421508_gene8	3.209e-259	827.0	COG0369@1|root,COG3182@1|root,COG0369@2|Bacteria,COG3182@2|Bacteria,1MWYV@1224|Proteobacteria,2TRCH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	PFAM oxidoreductase FAD NAD(P)-binding domain protein	cysJ	-	1.8.1.2	ko:K00380	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R00858	RC00065	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_1,FAD_binding_6,FeS,Flavodoxin_1,NAD_binding_1,PepSY_TM
DYD3_k127_1323539_7	314265.R2601_06643	3.027e-69	239.0	29N8T@1|root,3096N@2|Bacteria,1RJCI@1224|Proteobacteria,2U5NK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Tat pathway signal protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2271
DYD3_k127_1323539_8	571166.KI421508_gene11	8.499e-48	175.0	COG5591@1|root,COG5591@2|Bacteria,1N6RP@1224|Proteobacteria,2UFFA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Peptidase propeptide and YPEB domain	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_2
DYD3_k127_1323539_3	69279.BG36_04625	9.15e-110	358.0	COG0745@1|root,COG0745@2|Bacteria,1N7TJ@1224|Proteobacteria,2TUNQ@28211|Alphaproteobacteria,43JT1@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	PFAM response regulator receiver	qseB	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1323539_2	69279.BG36_04630	3.601e-164	536.0	COG0642@1|root,COG0642@2|Bacteria,1QTSX@1224|Proteobacteria,2U2V1@28211|Alphaproteobacteria,43HCP@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	T	Histidine kinase	-	-	2.7.13.3	ko:K02484	-	-	-	-	ko00000,ko01000,ko01001,ko02022	-	-	-	2CSK_N,HATPase_c,HisKA
DYD3_k127_1323539_6	1282876.BAOK01000001_gene1867	5.619e-78	267.0	COG1381@1|root,COG1381@2|Bacteria,1MVEJ@1224|Proteobacteria,2TTYW@28211|Alphaproteobacteria,4BQ6N@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	Involved in DNA repair and RecF pathway recombination	recO	-	-	ko:K03584	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecO_C,RecO_N
DYD3_k127_1323539_0	1430440.MGMSRv2_1089	0.0	1009.0	COG0188@1|root,COG0188@2|Bacteria,1MURI@1224|Proteobacteria,2TQRQ@28211|Alphaproteobacteria,2JQSC@204441|Rhodospirillales	204441|Rhodospirillales	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	parC	-	-	ko:K02621	-	-	-	-	ko00000,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
DYD3_k127_1323539_9	402881.Plav_0372	7.985e-46	166.0	COG1063@1|root,COG1063@2|Bacteria,1MW6Y@1224|Proteobacteria,2TSUK@28211|Alphaproteobacteria,1JP7K@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_1331688_1	1205680.CAKO01000038_gene2071	5.487e-88	299.0	COG0325@1|root,COG0325@2|Bacteria,1MWN7@1224|Proteobacteria,2TR5Z@28211|Alphaproteobacteria,2JQKQ@204441|Rhodospirillales	204441|Rhodospirillales	S	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	-	-	-	ko:K06997	-	-	-	-	ko00000	-	-	-	Ala_racemase_N
DYD3_k127_1331688_2	1430440.MGMSRv2_3483	1.033e-61	216.0	COG3786@1|root,COG3786@2|Bacteria,1RH22@1224|Proteobacteria,2U992@28211|Alphaproteobacteria,2JSNR@204441|Rhodospirillales	204441|Rhodospirillales	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
DYD3_k127_1331688_4	1121033.AUCF01000003_gene3340	6.831e-23	109.0	2E38X@1|root,32Y8M@2|Bacteria,1N7Y0@1224|Proteobacteria,2UGIT@28211|Alphaproteobacteria,2JTTM@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1331688_0	1122137.AQXF01000001_gene3273	3.795e-108	364.0	COG0807@1|root,COG0807@2|Bacteria,1MWZR@1224|Proteobacteria,2TR82@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate	ribA	-	3.5.4.25,4.1.99.12	ko:K01497,ko:K14652	ko00740,ko00790,ko01100,ko01110,ko02024,map00740,map00790,map01100,map01110,map02024	M00125,M00840	R00425,R07281	RC00293,RC01792,RC01815,RC02504	ko00000,ko00001,ko00002,ko01000	-	-	-	GTP_cyclohydro2
DYD3_k127_1331688_3	269796.Rru_A3638	6.622e-29	126.0	COG0745@1|root,COG0745@2|Bacteria,1MU3A@1224|Proteobacteria,2TR97@28211|Alphaproteobacteria,2JPIU@204441|Rhodospirillales	204441|Rhodospirillales	KT	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1331688_5	1196835.A458_20100	1.578e-05	52.0	COG0642@1|root,COG1653@1|root,COG4191@1|root,COG1653@2|Bacteria,COG2205@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RP53@1236|Gammaproteobacteria,1Z1QX@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	GAF,GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_4,Response_reg
DYD3_k127_1334141_4	1333998.M2A_2436	1.869e-33	131.0	COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,2U78W@28211|Alphaproteobacteria,4BQCR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide	trmL	-	2.1.1.207	ko:K03216	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	SpoU_methylase
DYD3_k127_1334141_2	1082931.KKY_2197	1.539e-77	263.0	COG0723@1|root,COG0723@2|Bacteria,1RAA2@1224|Proteobacteria,2TTT2@28211|Alphaproteobacteria,3N6V2@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis	petA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.10.2.2	ko:K00411	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,UCR_Fe-S_N
DYD3_k127_1334141_0	991905.SL003B_1173	9.619e-204	643.0	COG1290@1|root,COG1290@2|Bacteria,1MV97@1224|Proteobacteria,2TSZ3@28211|Alphaproteobacteria,4BPD0@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis	petB	-	-	ko:K00410,ko:K00412	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002,ko03029	-	-	-	Cytochrom_B_C,Cytochrom_C1,Cytochrome_B
DYD3_k127_1334141_1	570952.ATVH01000013_gene3042	2.99e-80	286.0	COG2857@1|root,COG2857@2|Bacteria,1QFU2@1224|Proteobacteria,2TUHX@28211|Alphaproteobacteria,2JQKM@204441|Rhodospirillales	204441|Rhodospirillales	C	Cytochrome C1 family	petC	-	-	ko:K00413	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002	-	-	-	Cytochrom_C1
DYD3_k127_1334141_3	1423144.Gal_02867	1.043e-46	170.0	COG0005@1|root,COG0005@2|Bacteria,1MUWW@1224|Proteobacteria,2TSN3@28211|Alphaproteobacteria,34ES3@302485|Phaeobacter	28211|Alphaproteobacteria	F	Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates	mtnP	-	2.4.2.28	ko:K00772	ko00270,ko01100,map00270,map01100	M00034	R01402	RC00063,RC02819	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
DYD3_k127_1337641_1	1282876.BAOK01000001_gene1472	1.919e-68	236.0	COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2TR2I@28211|Alphaproteobacteria,4BQAM@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	Q	ATPases associated with a variety of cellular activities	yrbF	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
DYD3_k127_1337641_0	570967.JMLV01000012_gene3209	2.88e-98	333.0	COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2TSGS@28211|Alphaproteobacteria,2JQEM@204441|Rhodospirillales	204441|Rhodospirillales	Q	Permease MlaE	-	-	-	ko:K02066	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaE,STAS_2
DYD3_k127_1337641_2	1121033.AUCF01000010_gene4458	1.257e-50	190.0	COG5330@1|root,COG5330@2|Bacteria,1MXBZ@1224|Proteobacteria,2TT9C@28211|Alphaproteobacteria,2JP8Y@204441|Rhodospirillales	204441|Rhodospirillales	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_1351232_2	460265.Mnod_3996	1.358e-173	550.0	COG1348@1|root,COG1348@2|Bacteria,1MVTE@1224|Proteobacteria,2TSKC@28211|Alphaproteobacteria,1JS7P@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP	nifH	-	1.18.6.1	ko:K02588	ko00625,ko00910,ko01100,ko01120,map00625,map00910,map01100,map01120	M00175	R05185,R05496	RC00002,RC01395,RC02891	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer4_NifH
DYD3_k127_1351232_5	335659.S23_46260	2.261e-101	337.0	28I9W@1|root,2Z8CH@2|Bacteria,1QCN6@1224|Proteobacteria,2U1GU@28211|Alphaproteobacteria,3JRG9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SIR2-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SIR2_2
DYD3_k127_1351232_11	114615.BRADO5422	9.591e-29	118.0	COG5554@1|root,COG5554@2|Bacteria,1N7DQ@1224|Proteobacteria,2UF73@28211|Alphaproteobacteria,3K06X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	NifT/FixU protein	fixU	-	-	ko:K02593	-	-	-	-	ko00000	-	-	-	NifT
DYD3_k127_1351232_8	272568.GDI0433	6.654e-42	155.0	COG5554@1|root,COG5554@2|Bacteria,1N1CF@1224|Proteobacteria,2U941@28211|Alphaproteobacteria,2JU45@204441|Rhodospirillales	204441|Rhodospirillales	Q	NifZ domain	nifZ	-	-	ko:K02597	-	-	-	-	ko00000	-	-	-	NifZ
DYD3_k127_1351232_6	272568.GDI0432	2.725e-83	285.0	COG1413@1|root,COG1413@2|Bacteria,1N94K@1224|Proteobacteria,2U34H@28211|Alphaproteobacteria,2JSKS@204441|Rhodospirillales	204441|Rhodospirillales	C	LRV protein FeS4 cluster	-	-	-	-	-	-	-	-	-	-	-	-	LRV,LRV_FeS
DYD3_k127_1351232_9	1038858.AXBA01000010_gene2608	9.122e-32	126.0	COG1145@1|root,COG1145@2|Bacteria,1N0CD@1224|Proteobacteria,2UFVU@28211|Alphaproteobacteria,3F1UI@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	4Fe-4S binding domain	fdxN	-	-	-	-	-	-	-	-	-	-	-	Fer4,Fer4_7
DYD3_k127_1351232_0	272568.GDI0430	1.436e-257	801.0	COG0535@1|root,COG1433@1|root,COG0535@2|Bacteria,COG1433@2|Bacteria,1MWDC@1224|Proteobacteria,2TSDD@28211|Alphaproteobacteria,2JPBI@204441|Rhodospirillales	204441|Rhodospirillales	C	FeMo cofactor biosynthesis protein NifB	nifB	-	-	ko:K02585	-	-	-	-	ko00000	-	-	-	Nitro_FeMo-Co,Radical_SAM
DYD3_k127_1351232_1	136993.KB900626_gene4080	1.806e-220	699.0	COG3604@1|root,COG3604@2|Bacteria,1QTT3@1224|Proteobacteria,2TW04@28211|Alphaproteobacteria,36XZN@31993|Methylocystaceae	28211|Alphaproteobacteria	KT	GAF domain	nifA	-	-	ko:K02584	ko02020,map02020	-	-	-	ko00000,ko00001,ko03000	-	-	-	GAF,HTH_8,Sigma54_activat
DYD3_k127_1351232_7	1122604.JONR01000003_gene1577	1.201e-49	182.0	COG2128@1|root,COG2128@2|Bacteria,1N8NE@1224|Proteobacteria,1T0ZK@1236|Gammaproteobacteria,1XA8E@135614|Xanthomonadales	135614|Xanthomonadales	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_1351232_3	1120792.JAFV01000001_gene1716	1.198e-169	558.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,36XWJ@31993|Methylocystaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	CHASE4,EAL,GGDEF,PAS_4,PAS_9
DYD3_k127_1351232_4	414684.RC1_0153	1.072e-111	372.0	COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2TT2C@28211|Alphaproteobacteria,2JQ4V@204441|Rhodospirillales	204441|Rhodospirillales	FP	exopolyphosphatase	-	-	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230	-	R03409	RC00002	ko00000,ko00001,ko01000	-	-	-	Ppx-GppA
DYD3_k127_1351232_10	1333998.M2A_2311	3.657e-29	118.0	COG0293@1|root,COG0293@2|Bacteria,1MW1C@1224|Proteobacteria,2TSBW@28211|Alphaproteobacteria,4BQ8H@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit	ftsJ	-	2.1.1.166	ko:K02427	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	FtsJ
DYD3_k127_1375029_4	438753.AZC_2924	2.406e-88	297.0	COG3284@1|root,COG3284@2|Bacteria,1NRG5@1224|Proteobacteria,2TR0H@28211|Alphaproteobacteria,3F0X0@335928|Xanthobacteraceae	28211|Alphaproteobacteria	KQ	GAF domain	acxR	-	-	ko:K21405	-	-	-	-	ko00000,ko03000	-	-	-	GAF,HTH_8,Sigma54_activ_2,Sigma54_activat
DYD3_k127_1375029_3	342113.DM82_4513	1.447e-89	308.0	COG4647@1|root,COG4647@2|Bacteria,1N485@1224|Proteobacteria,2VK8X@28216|Betaproteobacteria,1K452@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	Acetone carboxylase gamma subunit	acxC	-	6.4.1.6	ko:K10856	-	-	-	-	ko00000,ko01000	-	-	-	Acetone_carb_G
DYD3_k127_1375029_0	322710.Avin_20920	0.0	1390.0	COG0146@1|root,COG0146@2|Bacteria,1QU46@1224|Proteobacteria,1RS29@1236|Gammaproteobacteria	1236|Gammaproteobacteria	EQ	Hydantoinase B/oxoprolinase	-	-	3.5.2.14,6.4.1.6	ko:K01474,ko:K10854	ko00330,ko01100,map00330,map01100	-	R03187	RC00632	ko00000,ko00001,ko01000	-	-	-	Hydantoinase_B
DYD3_k127_1375029_1	322710.Avin_20910	0.0	1274.0	COG0145@1|root,COG0145@2|Bacteria,1MU2Y@1224|Proteobacteria,1RN6C@1236|Gammaproteobacteria	1236|Gammaproteobacteria	EQ	N-methylhydantoinase A acetone carboxylase, beta subunit	hyuA	-	3.5.2.14,6.4.1.6	ko:K01473,ko:K10855	ko00330,ko01100,map00330,map01100	-	R03187	RC00632	ko00000,ko00001,ko01000	-	-	-	Hydant_A_N,Hydantoinase_A
DYD3_k127_1375029_5	864069.MicloDRAFT_00016920	8.459e-52	191.0	COG0779@1|root,COG0779@2|Bacteria,1RDP2@1224|Proteobacteria,2TS4E@28211|Alphaproteobacteria,1JQWJ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Required for maturation of 30S ribosomal subunits	rimP	GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	ko:K09748	-	-	-	-	ko00000,ko03009	-	-	-	DUF150,DUF150_C
DYD3_k127_1375029_2	402881.Plav_3626	1.848e-227	716.0	COG0195@1|root,COG0195@2|Bacteria,1MWT7@1224|Proteobacteria,2TRQN@28211|Alphaproteobacteria,1JN8C@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	NusA-like KH domain	nusA	-	-	ko:K02600	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	HHH_5,KH_5,NusA_N,S1
DYD3_k127_1375029_6	1121033.AUCF01000003_gene3295	8.581e-47	178.0	COG2740@1|root,COG2740@2|Bacteria,1RHPR@1224|Proteobacteria,2U9RY@28211|Alphaproteobacteria,2JSPK@204441|Rhodospirillales	204441|Rhodospirillales	K	nucleic-acid-binding protein implicated in transcription termination	-	-	-	ko:K07742	-	-	-	-	ko00000	-	-	-	DUF448,Ribosomal_L7Ae
DYD3_k127_1375029_7	78245.Xaut_0293	4.324e-15	80.0	COG0532@1|root,COG0532@2|Bacteria,1MV26@1224|Proteobacteria,2TQMY@28211|Alphaproteobacteria,3EY2W@335928|Xanthobacteraceae	28211|Alphaproteobacteria	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	infB	-	-	ko:K02519	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
DYD3_k127_1381871_4	1120936.KB907226_gene2876	2.985e-11	66.0	COG0204@1|root,COG0204@2|Bacteria,2I1UA@201174|Actinobacteria	201174|Actinobacteria	I	Acyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acyltransferase
DYD3_k127_1381871_2	1449049.JONW01000006_gene2616	9.447e-86	300.0	COG0476@1|root,COG0476@2|Bacteria,1MW7H@1224|Proteobacteria,2TRWY@28211|Alphaproteobacteria,2KF6H@204458|Caulobacterales	204458|Caulobacterales	H	PFAM UBA THIF-type NAD FAD binding protein	-	-	2.7.7.80	ko:K21029	ko04122,map04122	-	R07459	RC00043	ko00000,ko00001,ko01000	-	-	-	ThiF
DYD3_k127_1381871_0	1219035.NT2_07_00870	2.498e-196	618.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2U211@28211|Alphaproteobacteria,2K3MG@204457|Sphingomonadales	204457|Sphingomonadales	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.4	ko:K00253	ko00280,ko01100,map00280,map01100	M00036	R04095	RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_1381871_3	1219035.NT2_07_00810	9.595e-53	193.0	COG1309@1|root,COG1309@2|Bacteria,1MV2V@1224|Proteobacteria,2V54K@28211|Alphaproteobacteria,2K574@204457|Sphingomonadales	204457|Sphingomonadales	K	YsiA-like protein, C-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_4,TetR_N
DYD3_k127_1381871_1	1123257.AUFV01000003_gene865	2.767e-95	322.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,1RZZY@1236|Gammaproteobacteria,1X5RR@135614|Xanthomonadales	135614|Xanthomonadales	I	Biotin carboxylase C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
DYD3_k127_1388044_0	1380391.JIAS01000011_gene4695	8.793e-184	597.0	COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,1QTVB@1224|Proteobacteria,2TW7E@28211|Alphaproteobacteria,2JZ2B@204441|Rhodospirillales	204441|Rhodospirillales	T	PAS fold	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_7,Response_reg
DYD3_k127_1388044_2	1238182.C882_0851	1.41e-110	371.0	COG3287@1|root,COG3287@2|Bacteria,1MVUZ@1224|Proteobacteria,2TRRI@28211|Alphaproteobacteria,2JRCT@204441|Rhodospirillales	204441|Rhodospirillales	S	FIST N domain	-	-	-	-	-	-	-	-	-	-	-	-	FIST,FIST_C
DYD3_k127_1388044_6	1231185.BAMP01000005_gene3935	4.016e-32	129.0	COG3474@1|root,COG3474@2|Bacteria,1RIDN@1224|Proteobacteria,2U142@28211|Alphaproteobacteria,43J6U@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Cytochrome c, class I	cycM	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_1388044_5	305700.B447_18934	7.404e-61	237.0	COG1131@1|root,COG1131@2|Bacteria,1MX56@1224|Proteobacteria,2VQIQ@28216|Betaproteobacteria,2KXXS@206389|Rhodocyclales	206389|Rhodocyclales	V	COG1131 ABC-type multidrug transport system, ATPase component	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_1388044_3	935840.JAEQ01000002_gene3413	7.019e-94	327.0	COG0842@1|root,COG0842@2|Bacteria,1MVUG@1224|Proteobacteria,2TSUF@28211|Alphaproteobacteria,43JC2@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	Transport permease protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_1388044_4	1211115.ALIQ01000228_gene1117	1.234e-90	312.0	COG0446@1|root,COG0446@2|Bacteria,1N5MC@1224|Proteobacteria,2TW6Z@28211|Alphaproteobacteria,3NBMU@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Pyridine nucleotide-disulphide oxidoreductase	fccB	-	1.8.5.4	ko:K17218	ko00920,map00920	-	R10152	RC03155	ko00000,ko00001,ko01000	-	-	-	DUF442,Pyr_redox_2
DYD3_k127_1388044_1	765913.ThidrDRAFT_0607	3.907e-115	385.0	COG0683@1|root,COG0683@2|Bacteria,1MWGW@1224|Proteobacteria,1RQ5G@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	TIGRFAM ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
DYD3_k127_1388997_2	1280953.HOC_18764	2.184e-49	191.0	COG4447@1|root,COG4447@2|Bacteria,1RCNG@1224|Proteobacteria	1224|Proteobacteria	S	protein related to plant photosystem II stability assembly factor	-	-	-	-	-	-	-	-	-	-	-	-	PSII_BNR
DYD3_k127_1388997_0	1198232.CYCME_2557	6.84e-214	692.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,1RN01@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Exporters of the RND superfamily	-	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
DYD3_k127_1388997_1	1280953.HOC_18754	5.798e-138	459.0	2EWNJ@1|root,33Q0H@2|Bacteria,1NR4T@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1407107_6	1220535.IMCC14465_17200	3.577e-38	144.0	COG0086@1|root,COG0086@2|Bacteria,1MU3M@1224|Proteobacteria,2TRHV@28211|Alphaproteobacteria,4BPIN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoC	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03046,ko:K13797	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
DYD3_k127_1407107_0	1430440.MGMSRv2_0029	0.0	2168.0	COG0085@1|root,COG0085@2|Bacteria,1MUC4@1224|Proteobacteria,2TS7S@28211|Alphaproteobacteria,2JQ0Q@204441|Rhodospirillales	204441|Rhodospirillales	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoB	-	2.7.7.6	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
DYD3_k127_1407107_5	1382230.ASAP_2060	2.096e-52	187.0	COG0222@1|root,COG0222@2|Bacteria,1RGU4@1224|Proteobacteria,2U9FX@28211|Alphaproteobacteria,2JSU1@204441|Rhodospirillales	204441|Rhodospirillales	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	rplL	-	-	ko:K02935	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L12,Ribosomal_L12_N
DYD3_k127_1407107_3	1150469.RSPPHO_00015	9.051e-63	220.0	COG0244@1|root,COG0244@2|Bacteria,1RAN5@1224|Proteobacteria,2U592@28211|Alphaproteobacteria,2JS6C@204441|Rhodospirillales	204441|Rhodospirillales	J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	rplJ	-	-	ko:K02864	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L10
DYD3_k127_1407107_1	1038866.KB902813_gene2106	5.538e-106	355.0	COG0081@1|root,COG0081@2|Bacteria,1MUE6@1224|Proteobacteria,2TRXP@28211|Alphaproteobacteria,3JVAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	rplA	GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02863	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L1
DYD3_k127_1407107_4	1121033.AUCF01000005_gene5104	8.87e-60	209.0	COG0080@1|root,COG0080@2|Bacteria,1RA2M@1224|Proteobacteria,2U760@28211|Alphaproteobacteria,2JS5J@204441|Rhodospirillales	204441|Rhodospirillales	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	rplK	-	-	ko:K02867	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L11,Ribosomal_L11_N
DYD3_k127_1407107_2	402881.Plav_2724	2.65e-85	286.0	COG0250@1|root,COG0250@2|Bacteria,1MU14@1224|Proteobacteria,2TRID@28211|Alphaproteobacteria,1JNF5@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.	nusG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141	-	ko:K02601	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	KOW,NusG
DYD3_k127_1407107_7	909943.HIMB100_00002920	1.204e-16	82.0	COG0690@1|root,COG0690@2|Bacteria,1N75P@1224|Proteobacteria,2UF51@28211|Alphaproteobacteria,4BR1J@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	U	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation	secE	-	-	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecE
DYD3_k127_1408706_2	1121033.AUCF01000001_gene2248	6.167e-148	476.0	COG1066@1|root,COG1066@2|Bacteria,1MUJQ@1224|Proteobacteria,2TS6F@28211|Alphaproteobacteria,2JQ3D@204441|Rhodospirillales	204441|Rhodospirillales	O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function	radA	-	-	ko:K04485	-	-	-	-	ko00000,ko03400	-	-	-	AAA_25,ATPase,ChlI
DYD3_k127_1408706_8	1207063.P24_04075	2.917e-36	149.0	COG1286@1|root,COG1286@2|Bacteria,1NF4G@1224|Proteobacteria,2TUVR@28211|Alphaproteobacteria,2JSVA@204441|Rhodospirillales	204441|Rhodospirillales	S	membrane protein, required for colicin V production	cvpA	-	-	ko:K03558	-	-	-	-	ko00000	-	-	-	Colicin_V
DYD3_k127_1408706_0	1123072.AUDH01000001_gene2902	1.511e-214	676.0	COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,2TR8V@28211|Alphaproteobacteria,2JPC6@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine	purF	-	2.4.2.14	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048	R01072	RC00010,RC02724,RC02752	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase_6,GATase_7,Pribosyltran
DYD3_k127_1408706_5	1333998.M2A_2275	7.103e-87	293.0	COG1028@1|root,COG1028@2|Bacteria,1MWBC@1224|Proteobacteria,2TTQS@28211|Alphaproteobacteria,4BPZQ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	IQ	KR domain	MA20_27940	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_1408706_3	1121106.JQKB01000135_gene4153	1.1e-119	402.0	COG3509@1|root,COG3509@2|Bacteria,1MXUI@1224|Proteobacteria,2TUS5@28211|Alphaproteobacteria,2JQ28@204441|Rhodospirillales	204441|Rhodospirillales	Q	Esterase PHB depolymerase	-	-	-	-	-	-	-	-	-	-	-	-	Esterase_phd
DYD3_k127_1408706_7	224911.27353263	2.901e-61	214.0	COG3609@1|root,COG3609@2|Bacteria,1RHNZ@1224|Proteobacteria,2U6ZI@28211|Alphaproteobacteria,3JY95@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	copG family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1408706_4	1123060.JONP01000006_gene4878	2.833e-90	309.0	COG1045@1|root,COG1045@2|Bacteria,1MVFX@1224|Proteobacteria,2TQQ5@28211|Alphaproteobacteria,2JVCT@204441|Rhodospirillales	204441|Rhodospirillales	E	Serine acetyltransferase, N-terminal	-	-	2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,SATase_N
DYD3_k127_1408706_1	402881.Plav_3492	1.147e-179	575.0	COG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,2TT38@28211|Alphaproteobacteria,1JNBI@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	GTPase that plays an essential role in the late steps of ribosome biogenesis	der	-	-	ko:K03977	-	-	-	-	ko00000,ko03009	-	-	-	KH_dom-like,MMR_HSR1
DYD3_k127_1408706_6	402881.Plav_3493	3.222e-82	278.0	COG1520@1|root,COG1520@2|Bacteria,1MXIJ@1224|Proteobacteria,2TUAD@28211|Alphaproteobacteria,1JNN6@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	PQQ-like domain	bamB	-	-	ko:K17713	-	-	-	-	ko00000,ko02000	1.B.33.1	-	-	PQQ_2,PQQ_3
DYD3_k127_1446356_2	1089551.KE386572_gene92	6.568e-56	205.0	COG4783@1|root,COG4783@2|Bacteria,1QUMJ@1224|Proteobacteria,2TXU6@28211|Alphaproteobacteria,4BTGD@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Peptidase family M48	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48
DYD3_k127_1446356_0	1254432.SCE1572_40920	1.01e-127	418.0	COG3576@1|root,COG3576@2|Bacteria,1QTUS@1224|Proteobacteria,43CW1@68525|delta/epsilon subdivisions,2X841@28221|Deltaproteobacteria,2YY4N@29|Myxococcales	28221|Deltaproteobacteria	S	Pfam:Pyridox_oxidase	-	-	-	ko:K07006	-	-	-	-	ko00000	-	-	-	Putative_PNPOx
DYD3_k127_1446356_1	1242864.D187_009481	6.271e-71	243.0	COG0625@1|root,COG0625@2|Bacteria,1MWY4@1224|Proteobacteria,438FQ@68525|delta/epsilon subdivisions,2X3QQ@28221|Deltaproteobacteria,2YWV7@29|Myxococcales	28221|Deltaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_N
DYD3_k127_145118_2	663610.JQKO01000005_gene2527	7.702e-141	454.0	COG2041@1|root,COG2041@2|Bacteria,1MUW0@1224|Proteobacteria,2TS40@28211|Alphaproteobacteria,3N9TG@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide	msrP	-	-	ko:K07147	-	-	-	-	ko00000,ko01000	-	-	-	Oxidored_molyb
DYD3_k127_145118_4	266264.Rmet_2940	7.186e-43	166.0	COG0783@1|root,COG0783@2|Bacteria,1RAC5@1224|Proteobacteria,2VHJI@28216|Betaproteobacteria,1K08S@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Belongs to the Dps family	dps	-	-	ko:K04047	-	-	-	-	ko00000,ko03036	-	-	-	Ferritin
DYD3_k127_145118_3	1461694.ATO9_01340	2.017e-70	257.0	COG1893@1|root,COG1893@2|Bacteria,1MX5M@1224|Proteobacteria,2TVRD@28211|Alphaproteobacteria,2PFWU@252301|Oceanicola	28211|Alphaproteobacteria	H	Ketopantoate reductase PanE/ApbA C terminal	-	-	-	-	-	-	-	-	-	-	-	-	ApbA,ApbA_C
DYD3_k127_145118_1	570967.JMLV01000002_gene1769	1.252e-199	628.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TRPK@28211|Alphaproteobacteria,2JQGR@204441|Rhodospirillales	204441|Rhodospirillales	E	Aminotransferase	aatA	-	2.6.1.1	ko:K00812	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	-	R00355,R00694,R00734,R00896,R02433,R02619,R05052	RC00006	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_145118_0	402881.Plav_2288	0.0	1129.0	COG0556@1|root,COG0556@2|Bacteria,1MUFK@1224|Proteobacteria,2TQSP@28211|Alphaproteobacteria,1JNA8@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	uvrB	-	-	ko:K03702	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	Helicase_C,ResIII,UVR,UvrB
DYD3_k127_1454464_0	1121106.JQKB01000002_gene3484	1.219e-133	464.0	COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,1MWRF@1224|Proteobacteria,2TS2A@28211|Alphaproteobacteria,2JT2W@204441|Rhodospirillales	204441|Rhodospirillales	K	CHAT domain	-	-	-	-	-	-	-	-	-	-	-	-	CHAT,TPR_10,TPR_12,TPR_4,TPR_7
DYD3_k127_1454464_1	631454.N177_2793	1.685e-107	361.0	COG0665@1|root,COG0665@2|Bacteria,1MVGP@1224|Proteobacteria,2TT3Y@28211|Alphaproteobacteria,1JPUT@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	ordL	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_145642_1	1333856.L686_11825	2e-52	187.0	COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,1RQVA@1236|Gammaproteobacteria,1Z1SD@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	Q	ABC-type transport system involved in resistance to organic solvents, ATPase component	mkl	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
DYD3_k127_145642_2	1121033.AUCF01000010_gene4455	7.313e-48	183.0	COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,2U1JN@28211|Alphaproteobacteria,2JS8K@204441|Rhodospirillales	204441|Rhodospirillales	Q	MlaD protein	-	-	-	ko:K02067,ko:K06192	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaD
DYD3_k127_145642_3	1307759.JOMJ01000003_gene2133	2.305e-46	177.0	COG3218@1|root,COG3218@2|Bacteria,1PDTR@1224|Proteobacteria,435ZX@68525|delta/epsilon subdivisions,2X0HC@28221|Deltaproteobacteria,2MCBN@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	ABC-type transport auxiliary lipoprotein component	-	-	-	ko:K18480	-	M00669	-	-	ko00000,ko00002,ko02000	3.A.1.27.1	-	-	ABC_trans_aux
DYD3_k127_145642_0	1449049.JONW01000006_gene2914	1.714e-78	268.0	COG0744@1|root,COG0744@2|Bacteria,1RDAQ@1224|Proteobacteria,2U0NP@28211|Alphaproteobacteria,2KG9J@204458|Caulobacterales	204458|Caulobacterales	M	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors	mtgA	-	2.4.1.129	ko:K03814	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly
DYD3_k127_145642_4	570967.JMLV01000002_gene1765	2.811e-27	127.0	COG1196@1|root,COG1196@2|Bacteria,1MVEP@1224|Proteobacteria,2TR50@28211|Alphaproteobacteria,2JRGY@204441|Rhodospirillales	204441|Rhodospirillales	D	nuclear chromosome segregation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1457152_7	1415780.JPOG01000001_gene1894	3.83e-17	85.0	COG1141@1|root,COG2124@1|root,COG1141@2|Bacteria,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,1RY69@1236|Gammaproteobacteria,1X8D2@135614|Xanthomonadales	135614|Xanthomonadales	Q	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
DYD3_k127_1457152_1	1415780.JPOG01000001_gene1893	8.495e-114	377.0	COG0451@1|root,COG0451@2|Bacteria,1MW32@1224|Proteobacteria,1SYQK@1236|Gammaproteobacteria,1X790@135614|Xanthomonadales	1236|Gammaproteobacteria	GM	3-beta hydroxysteroid dehydrogenase/isomerase family	-	-	1.1.1.219	ko:K00091	-	-	-	-	ko00000,ko01000	-	-	-	Epimerase
DYD3_k127_1457152_2	1123279.ATUS01000001_gene2033	1.712e-110	359.0	28NTV@1|root,2ZBSB@2|Bacteria,1RCH7@1224|Proteobacteria,1S2MM@1236|Gammaproteobacteria,1J92B@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1457152_0	1415780.JPOG01000001_gene1891	4.234e-126	407.0	28HCW@1|root,2ZB7F@2|Bacteria,1R8H4@1224|Proteobacteria,1RP13@1236|Gammaproteobacteria,1X6X4@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1457152_6	228405.HNE_2447	2.614e-21	108.0	COG1309@1|root,COG1309@2|Bacteria,1MY6Y@1224|Proteobacteria,2UKSE@28211|Alphaproteobacteria,4408W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_3,TetR_N
DYD3_k127_1457152_8	1205680.CAKO01000035_gene265	8.318e-05	53.0	COG0346@1|root,COG0346@2|Bacteria,1RK3P@1224|Proteobacteria,2UANZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_1457152_3	1463917.JODC01000002_gene738	1.79e-101	364.0	COG0654@1|root,COG0654@2|Bacteria,2GKUZ@201174|Actinobacteria	201174|Actinobacteria	CH	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
DYD3_k127_1457152_5	465541.ATCJ01000005_gene994	1.075e-41	172.0	COG0604@1|root,COG0604@2|Bacteria,2GIS3@201174|Actinobacteria	201174|Actinobacteria	C	alcohol dehydrogenase	-	-	1.1.1.1	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N_2
DYD3_k127_1457152_4	1110502.TMO_2131	6.59e-64	224.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2TQMB@28211|Alphaproteobacteria,2JR7S@204441|Rhodospirillales	204441|Rhodospirillales	Q	Fumarylacetoacetate (FAA) hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	DUF2437,FAA_hydrolase
DYD3_k127_1484521_0	1380391.JIAS01000011_gene4771	9.557e-118	385.0	COG1291@1|root,COG1291@2|Bacteria,1MXK3@1224|Proteobacteria,2TR5A@28211|Alphaproteobacteria,2JQMG@204441|Rhodospirillales	204441|Rhodospirillales	N	MotA/TolQ/ExbB proton channel family	motA	-	-	ko:K02556	ko02020,ko02030,ko02040,map02020,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	MotA_ExbB
DYD3_k127_1484521_1	1229204.AMYY01000001_gene2771	4.327e-66	244.0	COG1360@1|root,COG1360@2|Bacteria,1MW1Y@1224|Proteobacteria,2TTW2@28211|Alphaproteobacteria,4BQDM@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	Membrane MotB of proton-channel complex MotA/MotB	motB	-	-	ko:K02557	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	MotB_plug,OmpA
DYD3_k127_149011_2	1121033.AUCF01000002_gene574	5.331e-101	337.0	COG1121@1|root,COG1121@2|Bacteria,1MW47@1224|Proteobacteria,2TRJA@28211|Alphaproteobacteria,2JRRS@204441|Rhodospirillales	204441|Rhodospirillales	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02074	-	M00244	-	-	ko00000,ko00002,ko02000	3.A.1.15	-	-	ABC_tran
DYD3_k127_149011_1	402881.Plav_2228	1.269e-122	399.0	COG1108@1|root,COG1108@2|Bacteria,1MVC2@1224|Proteobacteria,2TS2V@28211|Alphaproteobacteria,1JPPG@119043|Rhodobiaceae	28211|Alphaproteobacteria	P	ABC 3 transport family	mntC	-	-	ko:K02075	-	M00244	-	-	ko00000,ko00002,ko02000	3.A.1.15	-	-	ABC-3
DYD3_k127_149011_3	1510531.JQJJ01000010_gene1977	1.506e-97	329.0	COG0803@1|root,COG0803@2|Bacteria,1MVW9@1224|Proteobacteria,2TQTF@28211|Alphaproteobacteria,3JRQN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the bacterial solute-binding protein 9 family	znuA	-	-	ko:K02077,ko:K09815	ko02010,map02010	M00242,M00244	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.15,3.A.1.15.3,3.A.1.15.5	-	-	ZnuA
DYD3_k127_149011_0	1038859.AXAU01000003_gene6142	1.36e-134	448.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,3JW5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis protein cobW C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	CobW_C,cobW
DYD3_k127_1502290_5	1123060.JONP01000002_gene1131	1.395e-83	285.0	COG0739@1|root,COG0739@2|Bacteria,1MY2X@1224|Proteobacteria,2U6AR@28211|Alphaproteobacteria,2JS5U@204441|Rhodospirillales	204441|Rhodospirillales	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_1502290_0	670292.JH26_23775	5.016e-256	796.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,1JTYM@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM Tripartite tricarboxylate transporter TctA family	-	-	-	ko:K07793	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctA
DYD3_k127_1502290_6	864069.MicloDRAFT_00061140	3.89e-59	214.0	2D22U@1|root,32TC0@2|Bacteria,1MWUI@1224|Proteobacteria,2TSQ6@28211|Alphaproteobacteria,1JVDU@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctB family	-	-	-	-	-	-	-	-	-	-	-	-	TctB
DYD3_k127_1502290_4	864069.MicloDRAFT_00061150	9.504e-119	390.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2UQ3H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
DYD3_k127_1502290_3	1502851.FG93_02313	1.561e-133	436.0	COG2828@1|root,COG2828@2|Bacteria,1MXVV@1224|Proteobacteria,2TQMC@28211|Alphaproteobacteria,3JWVJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PrpF protein	-	-	-	-	-	-	-	-	-	-	-	-	PrpF
DYD3_k127_1502290_1	1502851.FG93_02314	4.579e-141	452.0	COG0583@1|root,COG0583@2|Bacteria,1MUWX@1224|Proteobacteria,2TU0X@28211|Alphaproteobacteria,3JVPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1502290_2	1121033.AUCF01000001_gene2566	4.98e-141	454.0	COG1351@1|root,COG1351@2|Bacteria,1MWY8@1224|Proteobacteria,2TTER@28211|Alphaproteobacteria,2JQGP@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	thyX	-	2.1.1.148	ko:K03465	ko00240,ko00670,ko01100,map00240,map00670,map01100	-	R06613	RC00022,RC00332	ko00000,ko00001,ko01000	-	-	-	Thy1
DYD3_k127_1502290_7	237609.PSAKL28_22910	3.635e-38	145.0	COG0457@1|root,COG0457@2|Bacteria,1N01S@1224|Proteobacteria,1S0RI@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1507445_0	1382303.JPOM01000001_gene1148	6.82e-317	985.0	COG0286@1|root,COG0286@2|Bacteria,1MW3A@1224|Proteobacteria,2TQQA@28211|Alphaproteobacteria,2KGXS@204458|Caulobacterales	204458|Caulobacterales	V	N-6 DNA Methylase	-	-	2.1.1.72	ko:K03427	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	HsdM_N,N6_Mtase
DYD3_k127_1507445_4	331678.Cphamn1_0750	5.216e-102	351.0	COG0732@1|root,COG0732@2|Bacteria	2|Bacteria	V	type I restriction modification DNA specificity domain	hsdS	-	3.1.21.3	ko:K01154	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	Methylase_S
DYD3_k127_1507445_3	983920.Y88_1159	4.065e-124	406.0	COG1479@1|root,COG1479@2|Bacteria,1QXKG@1224|Proteobacteria,2TY41@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4357)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4357
DYD3_k127_1507445_2	261292.Nit79A3_0116	2.327e-198	627.0	COG3177@1|root,COG3177@2|Bacteria,1MV69@1224|Proteobacteria,2VIY1@28216|Betaproteobacteria,3737Y@32003|Nitrosomonadales	28216|Betaproteobacteria	S	PFAM Filamentation induced by cAMP death on	-	-	-	-	-	-	-	-	-	-	-	-	Fic,Fic_N,HTH_13,HTH_24
DYD3_k127_1507445_1	1090319.KE386571_gene1580	8.738e-234	729.0	COG0610@1|root,COG0610@2|Bacteria,1MU96@1224|Proteobacteria,2TS9I@28211|Alphaproteobacteria,2K3AU@204457|Sphingomonadales	204457|Sphingomonadales	L	Type I restriction enzyme R protein N terminus (HSDR_N)	-	-	3.1.21.3	ko:K01153	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	HSDR_N,ResIII
DYD3_k127_1519259_2	391165.GbCGDNIH1_2182	2.158e-32	129.0	COG5425@1|root,COG5425@2|Bacteria,1N08I@1224|Proteobacteria,2UBVR@28211|Alphaproteobacteria,2JTM4@204441|Rhodospirillales	204441|Rhodospirillales	E	Usg-like family	-	-	-	-	-	-	-	-	-	-	-	-	Usg
DYD3_k127_1519259_0	1380394.JADL01000001_gene3060	6.663e-122	404.0	COG5267@1|root,COG5267@2|Bacteria,1MWJK@1224|Proteobacteria,2TSY7@28211|Alphaproteobacteria,2JQ8U@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1800)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1800
DYD3_k127_1519259_1	1380391.JIAS01000014_gene2150	1.448e-95	329.0	COG4102@1|root,COG4102@2|Bacteria,1MX4R@1224|Proteobacteria,2TSFB@28211|Alphaproteobacteria,2JV5Y@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1501)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1501
DYD3_k127_1519259_3	861299.J421_1897	3.758e-30	132.0	COG0584@1|root,COG0584@2|Bacteria,1ZSMT@142182|Gemmatimonadetes	142182|Gemmatimonadetes	C	Glycerophosphoryl diester phosphodiesterase family	-	-	3.1.4.46	ko:K01126	ko00564,map00564	-	R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000	-	-	-	GDPD
DYD3_k127_1522833_2	414684.RC1_1507	8.409e-58	217.0	COG0457@1|root,COG0741@1|root,COG0457@2|Bacteria,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2TRDB@28211|Alphaproteobacteria,2JQ7W@204441|Rhodospirillales	204441|Rhodospirillales	M	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	-	-	-	ko:K08309	-	-	-	-	ko00000,ko01000,ko01011	-	GH23	-	SLT
DYD3_k127_1522833_0	1211115.ALIQ01000043_gene2957	0.0	1225.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3NA59@45404|Beijerinckiaceae	28211|Alphaproteobacteria	V	TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family	mexF2	-	-	ko:K03296	-	-	-	-	ko00000	2.A.6.2	-	-	ACR_tran
DYD3_k127_1522833_1	1297865.APJD01000003_gene6131	8.711e-97	331.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2TSWK@28211|Alphaproteobacteria,3JSRV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K19595	-	M00768,M00769	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2.25,2.A.6.2.34,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_1522833_4	1525715.IX54_09675	5.827e-35	136.0	COG3668@1|root,COG3668@2|Bacteria,1NGS6@1224|Proteobacteria,2UJXY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_1522833_5	1525715.IX54_09670	2.349e-27	113.0	2CIBW@1|root,349D6@2|Bacteria,1NDER@1224|Proteobacteria,2UHQS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1522833_3	631454.N177_3295	5.368e-44	164.0	COG0329@1|root,COG0329@2|Bacteria,1MUCM@1224|Proteobacteria,2TR5W@28211|Alphaproteobacteria,1JN0G@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)	dapA	-	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
DYD3_k127_1531832_0	1121106.JQKB01000008_gene1434	4.861e-153	494.0	COG1364@1|root,COG1364@2|Bacteria,1MU0T@1224|Proteobacteria,2TS98@28211|Alphaproteobacteria,2JPX5@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate	argJ	-	2.3.1.1,2.3.1.35	ko:K00620	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R00259,R02282	RC00004,RC00064	ko00000,ko00001,ko00002,ko01000	-	-	-	ArgJ
DYD3_k127_1531832_11	1121861.KB899925_gene2512	1.236e-16	87.0	COG0494@1|root,COG1670@1|root,COG0494@2|Bacteria,COG1670@2|Bacteria,1RCZM@1224|Proteobacteria,2U7A4@28211|Alphaproteobacteria,2JS44@204441|Rhodospirillales	204441|Rhodospirillales	JL	Belongs to the Nudix hydrolase family	-	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	Acetyltransf_3,NUDIX,NUDIX_4
DYD3_k127_1531832_7	272943.RSP_1166	1.326e-56	205.0	COG0494@1|root,COG0494@2|Bacteria,1RCZM@1224|Proteobacteria,2U7A4@28211|Alphaproteobacteria,1FBS8@1060|Rhodobacter	28211|Alphaproteobacteria	L	pfam nudix	mutT	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	Acetyltransf_3,NUDIX,NUDIX_4
DYD3_k127_1531832_4	395965.Msil_3357	3.246e-74	253.0	COG3812@1|root,COG3812@2|Bacteria,1RGUV@1224|Proteobacteria,2U9BA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	ko:K09983	-	-	-	-	ko00000	-	-	-	DUF1993
DYD3_k127_1531832_6	1207063.P24_17992	3.392e-61	218.0	COG2979@1|root,COG2979@2|Bacteria,1R95E@1224|Proteobacteria,2UB5H@28211|Alphaproteobacteria,2JZRH@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF533)	-	-	-	-	-	-	-	-	-	-	-	-	DUF533
DYD3_k127_1531832_8	1158292.JPOE01000006_gene3930	8.074e-43	160.0	COG3668@1|root,COG3668@2|Bacteria,1N7G9@1224|Proteobacteria,2VTCI@28216|Betaproteobacteria	28216|Betaproteobacteria	S	TIGRFAM addiction module toxin, RelE StbE family	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_1531832_10	1444770.AF72_07595	2.697e-31	136.0	COG3905@1|root,COG3905@2|Bacteria,1N39N@1224|Proteobacteria,1SE76@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1531832_3	402881.Plav_1735	2.925e-98	331.0	COG0500@1|root,COG2226@2|Bacteria,1PA5F@1224|Proteobacteria,2TRFS@28211|Alphaproteobacteria,1JNT2@119043|Rhodobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	bioC	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_1531832_1	44454.NF84_22960	2.038e-131	428.0	COG2199@1|root,COG4251@1|root,COG2199@2|Bacteria,COG4251@2|Bacteria,2I3TQ@201174|Actinobacteria,237A9@1762|Mycobacteriaceae	201174|Actinobacteria	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GAF,GAF_2,GGDEF
DYD3_k127_1531832_5	1207063.P24_06461	1.043e-71	250.0	COG1040@1|root,COG1040@2|Bacteria,1RHAV@1224|Proteobacteria,2TV7G@28211|Alphaproteobacteria,2JSB6@204441|Rhodospirillales	204441|Rhodospirillales	S	Phosphoribosyl transferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Pribosyltran
DYD3_k127_1531832_9	402881.Plav_1737	2.02e-36	139.0	COG0695@1|root,COG0695@2|Bacteria,1N72P@1224|Proteobacteria,2UFM1@28211|Alphaproteobacteria,1JPF8@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	grxC	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0033218,GO:0042277,GO:0043167,GO:0043168,GO:0043295,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0055114,GO:0072341,GO:1900750,GO:1901681	-	ko:K03676	-	-	-	-	ko00000,ko03110	-	-	-	Glutaredoxin
DYD3_k127_1531832_2	1150469.RSPPHO_01477	3.822e-103	342.0	COG0388@1|root,COG0388@2|Bacteria,1MUUB@1224|Proteobacteria,2TRGZ@28211|Alphaproteobacteria,2JQ0F@204441|Rhodospirillales	204441|Rhodospirillales	S	Carbon-nitrogen hydrolase	-	-	-	ko:K11206	-	-	-	-	ko00000,ko01000	-	-	-	CN_hydrolase
DYD3_k127_1531832_12	935548.KI912159_gene1236	1.696e-10	69.0	COG3755@1|root,COG3755@2|Bacteria,1N1R9@1224|Proteobacteria,2TZ7H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Pfam:DUF1311	-	-	-	-	-	-	-	-	-	-	-	-	LprI
DYD3_k127_1561306_5	1282876.BAOK01000001_gene1924	5.328e-31	123.0	COG0776@1|root,COG0776@2|Bacteria,1RH5Z@1224|Proteobacteria,2UCDG@28211|Alphaproteobacteria,4BQQ5@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	himA	-	-	ko:K04764	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_1561306_0	1279038.KB907337_gene451	1.828e-148	479.0	COG0332@1|root,COG0332@2|Bacteria,1MU9N@1224|Proteobacteria,2TR60@28211|Alphaproteobacteria,2JQQP@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids	fabH	-	2.3.1.180	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00082,M00083	R10707	RC00004,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACP_syn_III,ACP_syn_III_C
DYD3_k127_1561306_1	1121033.AUCF01000018_gene5824	5.815e-116	383.0	COG0416@1|root,COG0416@2|Bacteria,1MVM3@1224|Proteobacteria,2TR53@28211|Alphaproteobacteria,2JQQY@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA	plsX	-	2.3.1.15	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FA_synthesis
DYD3_k127_1561306_6	1244869.H261_11495	1.006e-22	98.0	COG0333@1|root,COG0333@2|Bacteria,1PU3Y@1224|Proteobacteria,2UF54@28211|Alphaproteobacteria,2JTZ3@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the bacterial ribosomal protein bL32 family	rpmF	-	-	ko:K02911	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_L32p
DYD3_k127_1561306_4	1316936.K678_05236	4.335e-31	131.0	COG1399@1|root,COG1399@2|Bacteria,1N7C2@1224|Proteobacteria,2UC4J@28211|Alphaproteobacteria,2JU1I@204441|Rhodospirillales	204441|Rhodospirillales	S	Uncharacterized ACR, COG1399	-	-	-	-	-	-	-	-	-	-	-	-	DUF177
DYD3_k127_1561306_2	1121033.AUCF01000018_gene5821	7.941e-35	139.0	COG5452@1|root,COG5452@2|Bacteria,1N12T@1224|Proteobacteria,2UCES@28211|Alphaproteobacteria,2JTNK@204441|Rhodospirillales	204441|Rhodospirillales	S	Ubiquinol-cytochrome C chaperone	-	-	-	ko:K17662	-	-	-	-	ko00000,ko03029	-	-	-	Ubiq_cyt_C_chap
DYD3_k127_1561306_3	1380394.JADL01000004_gene5757	1.089e-31	130.0	COG2913@1|root,COG2913@2|Bacteria,1RHYM@1224|Proteobacteria,2UBU9@28211|Alphaproteobacteria,2JTA1@204441|Rhodospirillales	204441|Rhodospirillales	J	COG2913 Small protein A (tmRNA-binding)	-	-	-	-	-	-	-	-	-	-	-	-	SmpA_OmlA
DYD3_k127_156412_0	1469613.JT55_12260	2.123e-140	454.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	-	-	3.6.3.31	ko:K11072	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.11.1	-	-	ABC_tran,TOBE_2
DYD3_k127_156412_1	717774.Marme_4001	1.01e-128	421.0	COG1176@1|root,COG1176@2|Bacteria,1MW9Y@1224|Proteobacteria,1S09C@1236|Gammaproteobacteria,1XI0X@135619|Oceanospirillales	135619|Oceanospirillales	P	ABC transporter permease	-	-	-	ko:K11071	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_156412_2	1121033.AUCF01000003_gene3272	2.39e-102	346.0	COG1177@1|root,COG1177@2|Bacteria,1MWVC@1224|Proteobacteria,2TV8E@28211|Alphaproteobacteria,2JQD9@204441|Rhodospirillales	204441|Rhodospirillales	E	COG1177 ABC-type spermidine putrescine transport system, permease component II	-	-	-	ko:K11070	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_156412_4	1101190.ARWB01000001_gene1909	1.132e-24	114.0	COG2334@1|root,COG2334@2|Bacteria	2|Bacteria	S	homoserine kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	APH
DYD3_k127_156412_3	1380391.JIAS01000017_gene565	1.532e-84	284.0	COG0001@1|root,COG0001@2|Bacteria,1MUY5@1224|Proteobacteria,2TT6G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	5.4.3.8	ko:K01845	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02272	RC00677	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_1572491_1	570967.JMLV01000006_gene349	1.272e-242	761.0	COG1384@1|root,COG1384@2|Bacteria,1MV32@1224|Proteobacteria,2TQYH@28211|Alphaproteobacteria,2JPYS@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the class-I aminoacyl-tRNA synthetase family	lysS	-	6.1.1.6	ko:K04566	ko00970,map00970	M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1f
DYD3_k127_1572491_5	1123261.AXDW01000001_gene983	2.891e-193	610.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,1RMBJ@1236|Gammaproteobacteria,1X9WX@135614|Xanthomonadales	135614|Xanthomonadales	I	Thiolase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_1572491_2	1090320.KB900605_gene3624	5.066e-225	705.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,2JZVD@204457|Sphingomonadales	204457|Sphingomonadales	C	belongs to the aldehyde dehydrogenase family	-	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_1572491_6	402881.Plav_0089	1.142e-174	554.0	COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,2V8RZ@28211|Alphaproteobacteria,1JPNM@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Alcohol dehydrogenase GroES-like domain	-	-	1.1.1.90	ko:K00055	ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220	M00537,M00538	R01763,R02611,R04304,R05282,R05347,R05348	RC00087,RC00116	ko00000,ko00001,ko00002,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_1572491_4	1298867.AUES01000009_gene5985	2.197e-194	614.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TU15@28211|Alphaproteobacteria,3JWC9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	p450
DYD3_k127_1572491_0	450851.PHZ_c2718	1.267e-258	804.0	COG0318@1|root,COG0318@2|Bacteria,1MUIC@1224|Proteobacteria,2TRRZ@28211|Alphaproteobacteria,2KF80@204458|Caulobacterales	204458|Caulobacterales	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
DYD3_k127_1572491_8	1380387.JADM01000001_gene429	9.273e-134	432.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,1S1JD@1236|Gammaproteobacteria,1XR5P@135619|Oceanospirillales	135619|Oceanospirillales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_1572491_9	1177179.A11A3_14932	4.501e-37	155.0	COG2867@1|root,COG2867@2|Bacteria,1QXKA@1224|Proteobacteria,1T3DT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_1572491_7	59538.XP_005973944.1	5.544e-150	481.0	COG1063@1|root,KOG0024@2759|Eukaryota,39SQD@33154|Opisthokonta	33154|Opisthokonta	Q	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	-	GO:0000721,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006066,GO:0008150,GO:0008152,GO:0009058,GO:0016491,GO:0016614,GO:0016616,GO:0019751,GO:0034077,GO:0034079,GO:0034311,GO:0034312,GO:0042844,GO:0042845,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046165,GO:0046173,GO:0055114,GO:0071704,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653	1.1.1.303,1.1.1.4	ko:K00004	ko00650,map00650	-	R02855,R02946,R10504	RC00205,RC00525	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_1572491_3	652103.Rpdx1_2745	9.235e-221	699.0	COG0028@1|root,COG0028@2|Bacteria,1MXDW@1224|Proteobacteria,2TT9X@28211|Alphaproteobacteria,3JRKI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	MA20_15075	-	2.2.1.6,4.1.1.8	ko:K01577,ko:K01652	ko00290,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R01908,R03050,R04672,R04673,R08648	RC00027,RC00106,RC00620,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_1572491_10	366602.Caul_3445	2.196e-32	134.0	COG1309@1|root,COG1309@2|Bacteria,1RIH0@1224|Proteobacteria,2UAQ0@28211|Alphaproteobacteria,2KIUU@204458|Caulobacterales	204458|Caulobacterales	K	BetI-type transcriptional repressor, C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_6,TetR_N
DYD3_k127_1579855_0	1122929.KB908215_gene903	4.156e-270	844.0	COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,2TR7V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	DEAD DEAH box helicase	lhr	-	-	ko:K03724	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DEAD,DEAD_assoc,Helicase_C
DYD3_k127_1579855_1	420324.KI912045_gene4173	6.257e-23	102.0	COG1407@1|root,COG1407@2|Bacteria,1RC5G@1224|Proteobacteria,2TU2T@28211|Alphaproteobacteria,1JT81@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase	MA20_22045	-	-	ko:K06953	-	-	-	-	ko00000	-	-	-	Metallophos
DYD3_k127_1589923_0	78245.Xaut_4911	0.0	1189.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,3EYZK@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,Hydrolase,YHS
DYD3_k127_1589923_2	395965.Msil_1615	2.757e-198	633.0	COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2TSZK@28211|Alphaproteobacteria,3NAUS@45404|Beijerinckiaceae	28211|Alphaproteobacteria	G	PEP-utilising enzyme, mobile domain	-	-	2.7.9.1	ko:K01006	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200	M00169,M00171,M00172,M00173	R00206	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PPDK_N
DYD3_k127_1589923_1	876269.ARWA01000001_gene2870	2.994e-230	732.0	COG1392@1|root,COG1392@2|Bacteria,1MW5V@1224|Proteobacteria,2TV2M@28211|Alphaproteobacteria,3NAUY@45404|Beijerinckiaceae	28211|Alphaproteobacteria	P	Phosphate transport regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1593401_1	78245.Xaut_1019	1.788e-78	286.0	COG0800@1|root,COG0800@2|Bacteria,1MUVJ@1224|Proteobacteria,2TUMH@28211|Alphaproteobacteria,3EZAH@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	KDPG and KHG aldolase	eda	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	4.1.2.14,4.1.3.42	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	M00008,M00061,M00308,M00631	R00470,R05605	RC00307,RC00308,RC00435	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldolase
DYD3_k127_1593401_0	1502851.FG93_04980	0.0	1030.0	COG0129@1|root,COG0129@2|Bacteria,1MU3T@1224|Proteobacteria,2TQNS@28211|Alphaproteobacteria,3K2FS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	Dehydratase family	edd	-	4.2.1.12	ko:K01690	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	M00008	R02036	RC00543	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
DYD3_k127_1593401_2	1125973.JNLC01000011_gene457	1.844e-69	239.0	COG0363@1|root,COG0363@2|Bacteria,1R5K6@1224|Proteobacteria,2U77K@28211|Alphaproteobacteria,3JSU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	pgl	-	2.7.1.12,3.1.1.31	ko:K00851,ko:K01057	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R01737,R02035	RC00002,RC00017,RC00537	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucosamine_iso
DYD3_k127_161047_1	1249627.D779_2301	9.975e-105	346.0	COG1117@1|root,COG1117@2|Bacteria,1MU16@1224|Proteobacteria,1RNUF@1236|Gammaproteobacteria,1WWM1@135613|Chromatiales	135613|Chromatiales	P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system	pstB	-	3.6.3.27	ko:K02036	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.7	-	-	ABC_tran
DYD3_k127_161047_0	266779.Meso_2286	0.0	1259.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,43GVM@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_1636820_2	1229780.BN381_250088	4.568e-132	437.0	COG1020@1|root,COG1020@2|Bacteria,2GKGU@201174|Actinobacteria	201174|Actinobacteria	I	Belongs to the long-chain O-acyltransferase family	-	GO:0000302,GO:0001666,GO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009628,GO:0009987,GO:0010035,GO:0016020,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019432,GO:0030312,GO:0036293,GO:0040007,GO:0042221,GO:0042493,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044419,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0047196,GO:0050896,GO:0051704,GO:0070482,GO:0071704,GO:0071731,GO:0071944,GO:0097366,GO:1901576,GO:1901698,GO:1901700	2.3.1.20	ko:K00635	ko00561,ko01100,map00561,map01100	M00089	R02251	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF1298,WES_acyltransf
DYD3_k127_1636820_5	1122137.AQXF01000003_gene2208	7.856e-77	273.0	COG0477@1|root,COG2814@2|Bacteria,1MVUF@1224|Proteobacteria,2TU4M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EGP	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_1636820_4	639283.Snov_1258	9.084e-108	354.0	COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,2U0JP@28211|Alphaproteobacteria,3F0SH@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	MA20_09265	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_1636820_0	639283.Snov_1257	3.808e-224	712.0	COG4585@1|root,COG4585@2|Bacteria,1MWPN@1224|Proteobacteria,2TUJ5@28211|Alphaproteobacteria,3F0EH@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	Histidine kinase	MA20_09270	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA_3
DYD3_k127_1636820_1	639283.Snov_1256	3.592e-179	563.0	COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,2TT2Y@28211|Alphaproteobacteria,3F0DP@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	ATPase family associated with various cellular activities (AAA)	-	-	-	ko:K03924	-	-	-	-	ko00000,ko01000	-	-	-	AAA_3
DYD3_k127_1636820_6	412597.AEPN01000008_gene2213	5.232e-57	209.0	COG1721@1|root,COG1721@2|Bacteria,1Q7RR@1224|Proteobacteria,2TTXZ@28211|Alphaproteobacteria,2PV4V@265|Paracoccus	28211|Alphaproteobacteria	S	Protein of unknown function DUF58	-	-	-	-	-	-	-	-	-	-	-	-	DUF58
DYD3_k127_1636820_3	639283.Snov_1253	7.1e-108	356.0	COG2304@1|root,COG2304@2|Bacteria,1MXQ7@1224|Proteobacteria,2TUPX@28211|Alphaproteobacteria,3F135@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	von Willebrand factor type A domain	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	VWA
DYD3_k127_1642444_1	1298867.AUES01000004_gene681	3.874e-148	474.0	COG0442@1|root,COG0442@2|Bacteria,1MU7E@1224|Proteobacteria,2TQQ4@28211|Alphaproteobacteria,3JUUQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro)	proS	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b
DYD3_k127_1642444_2	371731.Rsw2DRAFT_0448	1.801e-30	123.0	2DQ66@1|root,334XK@2|Bacteria,1NAH2@1224|Proteobacteria,2UI8G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1642444_4	450851.PHZ_c1786	8.505e-15	77.0	COG5454@1|root,COG5454@2|Bacteria,1PQAF@1224|Proteobacteria,2V2Q0@28211|Alphaproteobacteria,2KH83@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF1467)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1467
DYD3_k127_1642444_0	402881.Plav_3211	3.787e-202	645.0	COG0595@1|root,COG0595@2|Bacteria,1MUGV@1224|Proteobacteria,2TQTR@28211|Alphaproteobacteria,1JNJ2@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Zn-dependent metallo-hydrolase RNA specificity domain	rnjA	-	-	ko:K12574	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	Lactamase_B,Lactamase_B_2,RMMBL
DYD3_k127_1642444_3	314254.OA2633_02836	8.327e-25	107.0	COG0340@1|root,COG0340@2|Bacteria,1MWCC@1224|Proteobacteria,2TS82@28211|Alphaproteobacteria,43XXE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	H	COG0340 Biotin-(acetyl-CoA carboxylase) ligase	birA	-	6.3.4.15	ko:K03524	ko00780,ko01100,map00780,map01100	-	R01074,R05145	RC00043,RC00070,RC00096,RC02896	ko00000,ko00001,ko01000,ko03000	-	-	-	BPL_C,BPL_LplA_LipB,BPL_LplA_LipB_2
DYD3_k127_1646689_8	1205680.CAKO01000010_gene4022	1.054e-40	154.0	COG1192@1|root,COG1192@2|Bacteria,1MVKR@1224|Proteobacteria,2TRZY@28211|Alphaproteobacteria,2JP8S@204441|Rhodospirillales	204441|Rhodospirillales	D	COG1192 ATPases involved in chromosome partitioning	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	MipZ
DYD3_k127_1646689_3	1380394.JADL01000010_gene4242	5.51e-126	409.0	COG1210@1|root,COG1210@2|Bacteria,1MV5F@1224|Proteobacteria,2TRT6@28211|Alphaproteobacteria,2JPPP@204441|Rhodospirillales	204441|Rhodospirillales	M	UTP--glucose-1-phosphate uridylyltransferase	exoN	-	2.7.7.9	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	M00129,M00361,M00362,M00549	R00289	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
DYD3_k127_1646689_1	1430440.MGMSRv2_3721	1.328e-206	649.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,2JPVB@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	rkpK	-	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_1646689_2	391165.GbCGDNIH1_0590	2.266e-179	573.0	COG1109@1|root,COG1109@2|Bacteria,1MUA5@1224|Proteobacteria,2TRIJ@28211|Alphaproteobacteria,2JQBM@204441|Rhodospirillales	204441|Rhodospirillales	G	phosphomannomutase	exoC	-	5.4.2.8	ko:K01840	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	M00114	R01818	RC00408	ko00000,ko00001,ko00002,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
DYD3_k127_1646689_5	69279.BG36_21805	5.602e-88	298.0	COG0640@1|root,COG0640@2|Bacteria,1MWCW@1224|Proteobacteria,2TTA5@28211|Alphaproteobacteria,43IDQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_1646689_4	414684.RC1_3325	4.814e-113	372.0	COG0796@1|root,COG0796@2|Bacteria,1NAI2@1224|Proteobacteria,2TSR7@28211|Alphaproteobacteria,2JRW2@204441|Rhodospirillales	204441|Rhodospirillales	M	Provides the (R)-glutamate required for cell wall biosynthesis	murI	-	5.1.1.3	ko:K01776	ko00471,ko01100,map00471,map01100	-	R00260	RC00302	ko00000,ko00001,ko01000,ko01011	-	-	-	Asp_Glu_race
DYD3_k127_1646689_6	1207063.P24_12687	3.295e-78	291.0	COG1686@1|root,COG1686@2|Bacteria,1MUU7@1224|Proteobacteria,2TRCV@28211|Alphaproteobacteria,2JQDC@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the peptidase S11 family	-	-	3.4.16.4	ko:K01286	-	-	-	-	ko00000,ko01000	-	-	-	Peptidase_S11,SPOR
DYD3_k127_1646689_9	1207063.P24_05522	3.728e-39	156.0	2DYJG@1|root,32V5J@2|Bacteria,1N0CX@1224|Proteobacteria,2UE4E@28211|Alphaproteobacteria,2JTJD@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1646689_11	414684.RC1_1693	2.236e-17	89.0	COG5490@1|root,COG5490@2|Bacteria,1N3RI@1224|Proteobacteria,2UEFJ@28211|Alphaproteobacteria,2JTR0@204441|Rhodospirillales	204441|Rhodospirillales	S	Phasin protein	-	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
DYD3_k127_1646689_10	1395571.TMS3_0101445	7.569e-36	158.0	COG3450@1|root,COG3450@2|Bacteria,1RJEC@1224|Proteobacteria,1S7I0@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	enzyme of the cupin superfamily	-	-	-	ko:K06995	-	-	-	-	ko00000	-	-	-	Cupin_3
DYD3_k127_1646689_7	426117.M446_2259	5.95e-46	179.0	COG2127@1|root,COG2127@2|Bacteria,1MZU8@1224|Proteobacteria,2U982@28211|Alphaproteobacteria,1JUUF@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation	clpS	-	-	ko:K06891	-	-	-	-	ko00000	-	-	-	ClpS
DYD3_k127_1646689_0	1510531.JQJJ01000012_gene1438	0.0	1070.0	COG0542@1|root,COG0542@2|Bacteria,1MV8B@1224|Proteobacteria,2TQUZ@28211|Alphaproteobacteria,3JQUP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the ClpA ClpB family	clpA	GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564	-	ko:K03694	-	-	-	-	ko00000,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD3_k127_1679916_6	1041146.ATZB01000003_gene6884	2.929e-32	129.0	COG2329@1|root,COG2329@2|Bacteria,1NCKJ@1224|Proteobacteria,2UV5C@28211|Alphaproteobacteria,4BFS8@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_1679916_1	675817.VDA_002264	9.247e-172	555.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,1RMD2@1236|Gammaproteobacteria,1XU4R@135623|Vibrionales	135623|Vibrionales	C	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_1679916_10	439235.Dalk_1486	4.71e-05	53.0	28Y76@1|root,2ZK2F@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1679916_5	740709.A10D4_13213	9.382e-36	155.0	COG1835@1|root,COG1835@2|Bacteria,1R4CU@1224|Proteobacteria,1T1DB@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
DYD3_k127_1679916_7	489825.LYNGBM3L_33850	5.362e-28	120.0	COG2020@1|root,COG2020@2|Bacteria,1GBAG@1117|Cyanobacteria	1117|Cyanobacteria	O	PFAM Isoprenylcysteine carboxyl methyltransferase (ICMT) family	-	-	-	-	-	-	-	-	-	-	-	-	ICMT
DYD3_k127_1679916_3	1123270.ATUR01000007_gene1339	3.613e-64	231.0	COG3509@1|root,COG3509@2|Bacteria,1MXUI@1224|Proteobacteria,2TUS5@28211|Alphaproteobacteria,2K1CB@204457|Sphingomonadales	204457|Sphingomonadales	Q	Esterase PHB depolymerase	-	-	-	-	-	-	-	-	-	-	-	-	Esterase_phd
DYD3_k127_1679916_0	1336235.JAEG01000006_gene1041	7.644e-208	681.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,4B9MG@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	COG2931 RTX toxins and related Ca2 -binding proteins	-	-	3.4.24.40	ko:K01406	ko01503,map01503	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	HemolysinCabind
DYD3_k127_1679916_2	1123501.KB902289_gene1599	1.028e-86	317.0	COG2358@1|root,COG2358@2|Bacteria,1MXW1@1224|Proteobacteria,2TSK2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	TRAP transporter solute receptor TAXI family	-	-	-	ko:K07080	-	-	-	-	ko00000	-	-	-	NMT1_3
DYD3_k127_1679916_4	251221.35214022	3.999e-56	205.0	COG0625@1|root,COG0625@2|Bacteria,1G1XI@1117|Cyanobacteria	1117|Cyanobacteria	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_C_3,GST_N,GST_N_3
DYD3_k127_1679916_9	1408224.SAMCCGM7_c6524	1.176e-18	92.0	COG0260@1|root,COG0260@2|Bacteria,1MUIN@1224|Proteobacteria,2TSI6@28211|Alphaproteobacteria,4B8TH@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the peptidase M17 family	pepA	-	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17
DYD3_k127_1695606_8	1120792.JAFV01000001_gene1598	5.085e-14	72.0	COG2197@1|root,COG2197@2|Bacteria,1MVNV@1224|Proteobacteria,2TTK7@28211|Alphaproteobacteria,36Y44@31993|Methylocystaceae	28211|Alphaproteobacteria	KT	helix_turn_helix, Lux Regulon	MA20_23080	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_1695606_9	311403.Arad_2334	1.615e-10	65.0	COG0582@1|root,COG0582@2|Bacteria,1N2H9@1224|Proteobacteria,2TS7K@28211|Alphaproteobacteria,4BHMT@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Pfam:DUF4102	-	-	-	-	-	-	-	-	-	-	-	-	Arm-DNA-bind_3,Phage_int_SAM_3,Phage_integrase
DYD3_k127_1695606_3	1037409.BJ6T_65520	1.736e-165	525.0	COG1879@1|root,COG1879@2|Bacteria,1MXJS@1224|Proteobacteria,2TTHJ@28211|Alphaproteobacteria,3JUAE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding proteins and sugar binding domain of LacI family	ytfQ	GO:0003674,GO:0005215,GO:0005488,GO:0005534,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0015144,GO:0015145,GO:0015749,GO:0015757,GO:0016020,GO:0016021,GO:0022857,GO:0030246,GO:0030288,GO:0030313,GO:0031224,GO:0031975,GO:0034219,GO:0036094,GO:0042597,GO:0044425,GO:0044464,GO:0048029,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944	-	ko:K02058,ko:K10439,ko:K17213	ko02010,ko02030,map02010,map02030	M00212,M00221,M00593	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2,3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
DYD3_k127_1695606_1	1038859.AXAU01000010_gene1684	4.933e-232	732.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JS9B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	ytfR	-	3.6.3.17	ko:K02056,ko:K10441,ko:K17210	ko02010,map02010	M00212,M00221,M00592	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.2,3.A.1.2.1,3.A.1.2.13,3.A.1.2.19,3.A.1.2.21	-	-	ABC_tran
DYD3_k127_1695606_4	1168059.KB899087_gene1022	3.491e-154	494.0	COG1172@1|root,COG1172@2|Bacteria,1MUM6@1224|Proteobacteria,2TUE1@28211|Alphaproteobacteria,3F0GW@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	ytfT	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0008643,GO:0015144,GO:0015145,GO:0015146,GO:0015591,GO:0015749,GO:0015750,GO:0015752,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0032991,GO:0034219,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
DYD3_k127_1695606_5	1038859.AXAU01000010_gene1682	1.136e-141	473.0	COG1172@1|root,COG1172@2|Bacteria,1MW9Z@1224|Proteobacteria,2TTCG@28211|Alphaproteobacteria,3JUQ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	yjfF	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
DYD3_k127_1695606_6	1168059.KB899087_gene1024	1.283e-98	343.0	COG2186@1|root,COG2186@2|Bacteria,1MV83@1224|Proteobacteria,2UDPS@28211|Alphaproteobacteria,3F03Q@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_1695606_0	78245.Xaut_1022	0.0	1049.0	COG0129@1|root,COG0129@2|Bacteria,1MV4I@1224|Proteobacteria,2TQRW@28211|Alphaproteobacteria,3EYCK@335928|Xanthobacteraceae	28211|Alphaproteobacteria	EG	Belongs to the IlvD Edd family	ilvD2	-	4.2.1.25	ko:K13875	ko00053,ko01100,map00053,map01100	-	R02522	RC00543	ko00000,ko00001,ko01000	-	-	-	ILVD_EDD
DYD3_k127_1695606_2	78245.Xaut_1021	7.945e-178	559.0	COG0329@1|root,COG0329@2|Bacteria,1MWV5@1224|Proteobacteria,2TRE1@28211|Alphaproteobacteria,3EXZJ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	EM	Dihydrodipicolinate synthetase family	MA20_21525	-	4.2.1.43	ko:K13876	ko00053,ko01100,map00053,map01100	-	R02278	RC00429	ko00000,ko00001,ko01000	-	-	-	DHDPS
DYD3_k127_1695606_7	395963.Bind_3078	1.582e-43	164.0	COG1012@1|root,COG1012@2|Bacteria,1MY2V@1224|Proteobacteria,2TTPR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	COG1012 NAD-dependent aldehyde dehydrogenases	-	-	1.2.1.26	ko:K13877	ko00040,ko00053,map00040,map00053	-	R00264	RC00080	ko00000,ko00001,ko01000	-	-	-	Aldedh
DYD3_k127_1710769_0	1294143.H681_12370	8.938e-158	512.0	COG0183@1|root,COG0183@2|Bacteria,1MUZV@1224|Proteobacteria,1RN81@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	COG0183 Acetyl-CoA acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_1710769_2	742159.HMPREF0004_1539	3.806e-37	150.0	COG1545@1|root,COG1545@2|Bacteria,1N2C8@1224|Proteobacteria,2VR2X@28216|Betaproteobacteria,3T7MK@506|Alcaligenaceae	28216|Betaproteobacteria	S	nucleic-acid-binding protein containing a Zn-ribbon	-	-	-	ko:K07068	-	-	-	-	ko00000	-	-	-	DUF35_N,OB_aCoA_assoc
DYD3_k127_1710769_3	1382303.JPOM01000001_gene874	1.8e-32	129.0	COG3255@1|root,COG3255@2|Bacteria,1PBWT@1224|Proteobacteria,2V6E3@28211|Alphaproteobacteria,2KH6J@204458|Caulobacterales	204458|Caulobacterales	I	PFAM Sterol-binding domain protein	-	-	-	-	-	-	-	-	-	-	-	-	SCP2
DYD3_k127_1710769_4	402881.Plav_2497	8.67e-13	70.0	COG2267@1|root,COG2267@2|Bacteria,1QU7K@1224|Proteobacteria,2TW27@28211|Alphaproteobacteria,1JNZY@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	PFAM alpha beta hydrolase fold	-	-	2.7.10.2,3.3.2.9	ko:K01253,ko:K08253	ko00980,ko04976,ko05204,map00980,map04976,map05204	-	R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443	RC01447,RC01728,RC01764,RC02528	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
DYD3_k127_1710769_1	472175.EL18_01341	3.604e-62	220.0	COG2885@1|root,COG2885@2|Bacteria,1MYBP@1224|Proteobacteria,2U787@28211|Alphaproteobacteria,43J74@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	yiaD	-	-	-	-	-	-	-	-	-	-	-	Gly-zipper_Omp,Gly-zipper_YMGG,OmpA
DYD3_k127_1721417_5	1218084.BBJK01000016_gene1682	8.028e-22	96.0	COG1804@1|root,COG1804@2|Bacteria,1MVY1@1224|Proteobacteria,2VKB0@28216|Betaproteobacteria,1JZPE@119060|Burkholderiaceae	28216|Betaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
DYD3_k127_1721417_1	1205680.CAKO01000038_gene2007	2.087e-154	496.0	COG0389@1|root,COG0389@2|Bacteria,1MUUH@1224|Proteobacteria,2TSJN@28211|Alphaproteobacteria,2JVT9@204441|Rhodospirillales	204441|Rhodospirillales	L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	dinB	-	2.7.7.7	ko:K02346	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	IMS,IMS_C,IMS_HHH
DYD3_k127_1721417_3	1510531.JQJJ01000009_gene1298	1.001e-118	389.0	COG0583@1|root,COG0583@2|Bacteria,1MV06@1224|Proteobacteria,2U0A9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1721417_4	1429916.X566_16735	4.022e-87	295.0	COG0657@1|root,COG0657@2|Bacteria,1MW4D@1224|Proteobacteria,2U4BB@28211|Alphaproteobacteria,3K35B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	alpha/beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
DYD3_k127_1721417_2	397945.Aave_1362	1.516e-146	476.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2VHW3@28216|Betaproteobacteria,4AA9A@80864|Comamonadaceae	28216|Betaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	bepF	-	-	ko:K18901	-	M00698	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_1721417_0	1038858.AXBA01000001_gene3521	0.0	1695.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3EYWM@335928|Xanthobacteraceae	28211|Alphaproteobacteria	V	Protein export membrane protein	MA20_26850	-	-	ko:K18299,ko:K18902	-	M00641,M00698	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.16	-	-	ACR_tran
DYD3_k127_1750705_16	1333998.M2A_2436	4.873e-16	79.0	COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,2U78W@28211|Alphaproteobacteria,4BQCR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide	trmL	-	2.1.1.207	ko:K03216	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	SpoU_methylase
DYD3_k127_1750705_3	1380391.JIAS01000012_gene4322	3.945e-134	431.0	COG0408@1|root,COG0408@2|Bacteria,1MWMF@1224|Proteobacteria,2TQNC@28211|Alphaproteobacteria,2JR26@204441|Rhodospirillales	204441|Rhodospirillales	H	Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX	hemF	-	1.3.3.3	ko:K00228	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03220	RC00884	ko00000,ko00001,ko00002,ko01000	-	-	-	Coprogen_oxidas
DYD3_k127_1750705_17	1038858.AXBA01000039_gene5094	7.92e-13	77.0	COG3319@1|root,COG3319@2|Bacteria,1MZ9T@1224|Proteobacteria,2UC4H@28211|Alphaproteobacteria,3EZNC@335928|Xanthobacteraceae	28211|Alphaproteobacteria	Q	amino acid activation for nonribosomal peptide biosynthetic process	MA20_01935	-	-	-	-	-	-	-	-	-	-	-	Thioesterase
DYD3_k127_1750705_5	1292034.OR37_01952	9.781e-104	346.0	COG3739@1|root,COG3739@2|Bacteria,1PMEC@1224|Proteobacteria,2TRGD@28211|Alphaproteobacteria,2KF0S@204458|Caulobacterales	204458|Caulobacterales	S	Protein of unknown function (DUF817)	-	-	-	-	-	-	-	-	-	-	-	-	DUF817
DYD3_k127_1750705_15	398512.JQKC01000010_gene20	4.791e-20	100.0	2DFIW@1|root,32U5K@2|Bacteria	2|Bacteria	S	Domain of unknown function (DUF4919)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4919
DYD3_k127_1750705_14	402881.Plav_1046	1.284e-27	117.0	COG3609@1|root,COG3609@2|Bacteria,1N7IM@1224|Proteobacteria,2UF5D@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulators containing the CopG Arc MetJ DNA-binding domain	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_1750705_12	1354722.JQLS01000001_gene4692	4.281e-31	126.0	COG3668@1|root,COG3668@2|Bacteria,1N9GA@1224|Proteobacteria,2UFUV@28211|Alphaproteobacteria,46S1H@74030|Roseovarius	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_1750705_4	1121374.KB891576_gene279	3.453e-124	420.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,1RNN0@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	aminotransferase	aspC	-	2.6.1.1,2.6.1.84	ko:K00812,ko:K12252	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	-	R00355,R00694,R00734,R00896,R02433,R02619,R05052,R08197	RC00006,RC00008	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_1750705_13	350058.Mvan_3684	1.577e-28	124.0	COG2207@1|root,COG2207@2|Bacteria,2IA4T@201174|Actinobacteria,238Y3@1762|Mycobacteriaceae	201174|Actinobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
DYD3_k127_1750705_8	420662.Mpe_A2354	4.11e-89	303.0	COG3000@1|root,COG3000@2|Bacteria,1MW5G@1224|Proteobacteria,2VP54@28216|Betaproteobacteria,1KP3D@119065|unclassified Burkholderiales	28216|Betaproteobacteria	I	Fatty acid hydroxylase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	DUF3703,FA_hydroxylase
DYD3_k127_1750705_7	1089552.KI911559_gene1025	5.96e-101	346.0	COG0617@1|root,COG0617@2|Bacteria,1MVCS@1224|Proteobacteria,2TRPZ@28211|Alphaproteobacteria,2JQ9S@204441|Rhodospirillales	204441|Rhodospirillales	J	poly(A) polymerase	-	-	2.7.7.19,2.7.7.72	ko:K00970,ko:K00974	ko03013,ko03018,map03013,map03018	-	R09382,R09383,R09384,R09386	RC00078	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	PolyA_pol,PolyA_pol_RNAbd
DYD3_k127_1750705_18	743836.AYNA01000029_gene2470	3.748e-05	50.0	2CETE@1|root,32ZH4@2|Bacteria,1N1NH@1224|Proteobacteria,2UBYE@28211|Alphaproteobacteria,370KT@31993|Methylocystaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1750705_11	717785.HYPMC_0905	1.919e-62	223.0	COG0494@1|root,COG0494@2|Bacteria,1RD2C@1224|Proteobacteria,2TV3Q@28211|Alphaproteobacteria,3N7C1@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	L	NUDIX domain	MA20_44635	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_1750705_10	1282876.BAOK01000001_gene1200	2.679e-63	224.0	COG3816@1|root,COG3816@2|Bacteria,1RD5Q@1224|Proteobacteria,2U7DA@28211|Alphaproteobacteria,4BQN8@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1285)	MA20_44640	-	-	ko:K09986	-	-	-	-	ko00000	-	-	-	DUF1285
DYD3_k127_1750705_2	1282876.BAOK01000001_gene1199	1.311e-144	474.0	COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,2TR0T@28211|Alphaproteobacteria,4BP9K@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	ATPase family associated with various cellular activities (AAA)	moxR	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	-	ko:K03924	-	-	-	-	ko00000,ko01000	-	-	-	AAA_3
DYD3_k127_1750705_9	414684.RC1_3414	8.392e-85	289.0	COG1721@1|root,COG1721@2|Bacteria,1MWPG@1224|Proteobacteria,2TTDX@28211|Alphaproteobacteria,2JPHZ@204441|Rhodospirillales	204441|Rhodospirillales	S	conserved protein (some members contain a von Willebrand factor type A (vWA) domain)	-	-	-	-	-	-	-	-	-	-	-	-	DUF58
DYD3_k127_1750705_0	1121033.AUCF01000004_gene4927	1.697e-245	793.0	28H8H@1|root,2Z7KE@2|Bacteria,1MV77@1224|Proteobacteria,2TSVV@28211|Alphaproteobacteria,2JQH7@204441|Rhodospirillales	204441|Rhodospirillales	S	Aerotolerance regulator N-terminal	-	-	-	-	-	-	-	-	-	-	-	-	BatA,DUF4159
DYD3_k127_1750705_1	1207063.P24_11597	1.259e-216	692.0	COG5426@1|root,COG5426@2|Bacteria,1MVWA@1224|Proteobacteria,2TQNQ@28211|Alphaproteobacteria,2JQ89@204441|Rhodospirillales	204441|Rhodospirillales	S	membrane	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1750705_6	266834.SM_b20636	5.697e-101	338.0	COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,2U2G6@28211|Alphaproteobacteria,4BCVN@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Transposase IS116/IS110/IS902 family	-	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110,Transposase_20
DYD3_k127_1751632_1	1245469.S58_11450	1.681e-120	389.0	COG2141@1|root,COG2141@2|Bacteria,1MUJ9@1224|Proteobacteria,2TQKS@28211|Alphaproteobacteria,3JTAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	1.14.14.28	ko:K20938	-	-	-	-	ko00000,ko01000	-	-	-	Bac_luciferase
DYD3_k127_1751632_5	1101192.KB910516_gene3972	1.511e-43	165.0	COG1959@1|root,COG1959@2|Bacteria,1N05H@1224|Proteobacteria,2UBZM@28211|Alphaproteobacteria,1JUM2@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	transcriptional regulator, Rrf2 family	-	-	-	ko:K13771	ko05132,map05132	-	-	-	ko00000,ko00001,ko03000	-	-	-	Rrf2
DYD3_k127_1751632_2	395963.Bind_2471	4.57e-103	343.0	COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,2TQS4@28211|Alphaproteobacteria,3NA37@45404|Beijerinckiaceae	28211|Alphaproteobacteria	K	PBP superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1751632_3	1297863.APJF01000018_gene3079	1.181e-86	301.0	COG2855@1|root,COG2855@2|Bacteria,1MVIP@1224|Proteobacteria,2TVK9@28211|Alphaproteobacteria,3JV4K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Conserved hypothetical protein 698	yeiH	-	-	-	-	-	-	-	-	-	-	-	Cons_hypoth698
DYD3_k127_1751632_0	717785.HYPMC_3253	4.995e-145	471.0	COG3213@1|root,COG3213@2|Bacteria,1MUJK@1224|Proteobacteria,2TSQ2@28211|Alphaproteobacteria,3N7W9@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	P	NnrS protein	nnrS	-	-	ko:K07234	-	-	-	-	ko00000	-	-	-	NnrS
DYD3_k127_1751632_4	438753.AZC_1423	7.803e-84	284.0	COG0664@1|root,COG0664@2|Bacteria,1R5P7@1224|Proteobacteria,2TV0F@28211|Alphaproteobacteria,3F138@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Crp-like helix-turn-helix domain	ftrB	-	-	ko:K13642	-	-	-	-	ko00000,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_1758644_0	1122135.KB893137_gene1184	1.545e-258	809.0	COG0449@1|root,COG0449@2|Bacteria,1MW4K@1224|Proteobacteria,2TQPM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	glmS	GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.6.1.16	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	-	R00768	RC00010,RC00163,RC02752	ko00000,ko00001,ko01000,ko01002	-	-	-	GATase_6,SIS
DYD3_k127_1758644_2	1333998.M2A_2122	4.226e-28	118.0	COG2267@1|root,COG2267@2|Bacteria	2|Bacteria	I	carboxylic ester hydrolase activity	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_1762453_1	1110502.TMO_3109	2.339e-87	292.0	COG0491@1|root,COG0491@2|Bacteria,1MVC3@1224|Proteobacteria,2TUAZ@28211|Alphaproteobacteria,2JWCT@204441|Rhodospirillales	204441|Rhodospirillales	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_1762453_0	1205680.CAKO01000029_gene5255	7.324e-129	440.0	COG0664@1|root,COG1752@1|root,COG0664@2|Bacteria,COG1752@2|Bacteria,1MUM9@1224|Proteobacteria,2TVQR@28211|Alphaproteobacteria,2JUNY@204441|Rhodospirillales	204441|Rhodospirillales	K	Patatin-like phospholipase	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin,cNMP_binding
DYD3_k127_1762453_2	1224746.B932_3497	3.482e-09	59.0	COG0354@1|root,COG0354@2|Bacteria,1N852@1224|Proteobacteria,2TR8J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the GcvT family	ygfZ	-	-	ko:K06980,ko:K22073	-	-	-	-	ko00000,ko01000,ko03016,ko03029	-	-	-	GCV_T,GCV_T_C
DYD3_k127_176956_2	216595.PFLU_2923	1.95e-103	346.0	COG2207@1|root,COG2207@2|Bacteria,1R4MG@1224|Proteobacteria,1S26A@1236|Gammaproteobacteria,1YNE3@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	K	AraC family transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_176956_0	93220.LV28_21985	1.137e-253	791.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2VJ5E@28216|Betaproteobacteria,1K0Z0@119060|Burkholderiaceae	28216|Betaproteobacteria	I	PFAM AMP-dependent synthetase and ligase	-	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_176956_3	1410620.SHLA_9c000050	2.381e-103	341.0	COG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,2TRPN@28211|Alphaproteobacteria,4B9QX@82115|Rhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_176956_1	258594.RPA2304	4.011e-183	582.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JR13@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	atoB	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_1771561_5	1054213.HMPREF9946_04962	3.014e-65	232.0	COG2717@1|root,COG2717@2|Bacteria,1RDUP@1224|Proteobacteria,2U5HG@28211|Alphaproteobacteria,2JSCA@204441|Rhodospirillales	204441|Rhodospirillales	C	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain	msrQ	-	-	ko:K17247	-	-	-	-	ko00000	-	-	-	Ferric_reduct
DYD3_k127_1771561_2	402881.Plav_3120	3.689e-113	381.0	COG2211@1|root,COG2211@2|Bacteria,1MVUM@1224|Proteobacteria,2U1DI@28211|Alphaproteobacteria,1JQ28@119043|Rhodobiaceae	28211|Alphaproteobacteria	G	PFAM major facilitator superfamily MFS_1	-	-	-	-	-	-	-	-	-	-	-	-	MFS_2
DYD3_k127_1771561_6	1380394.JADL01000001_gene2790	1.394e-35	143.0	COG2854@1|root,COG2854@2|Bacteria,1NKFA@1224|Proteobacteria,2UAPV@28211|Alphaproteobacteria,2JSSQ@204441|Rhodospirillales	204441|Rhodospirillales	Q	COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component	-	-	-	ko:K07323	ko02010,map02010	M00210	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27.3	-	-	MlaC
DYD3_k127_1771561_4	1282876.BAOK01000001_gene1333	2.52e-76	266.0	COG2853@1|root,COG2853@2|Bacteria,1MVX0@1224|Proteobacteria,2U7CZ@28211|Alphaproteobacteria,4BQT3@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	MlaA lipoprotein	vacJ	-	-	ko:K04754	-	-	-	-	ko00000	-	-	-	MlaA
DYD3_k127_1771561_7	1312954.KI914846_gene1674	0.0007	43.0	COG3595@1|root,COG3595@2|Bacteria,2GJZC@201174|Actinobacteria	201174|Actinobacteria	S	Putative adhesin	-	-	-	-	-	-	-	-	-	-	-	-	DUF4097
DYD3_k127_1771561_3	1430440.MGMSRv2_2670	6.991e-99	332.0	COG0500@1|root,COG0640@1|root,COG0640@2|Bacteria,COG2226@2|Bacteria,1NFSV@1224|Proteobacteria,2TSMV@28211|Alphaproteobacteria,2JPME@204441|Rhodospirillales	204441|Rhodospirillales	KQ	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5,Methyltransf_11
DYD3_k127_1771561_1	1430440.MGMSRv2_2671	6.747e-130	421.0	COG0685@1|root,COG0685@2|Bacteria,1MUC9@1224|Proteobacteria,2TQZA@28211|Alphaproteobacteria,2JQ95@204441|Rhodospirillales	204441|Rhodospirillales	E	Methylenetetrahydrofolate reductase	metF	-	1.5.1.20	ko:K00297	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523	M00377	R01224,R07168	RC00081	ko00000,ko00001,ko00002,ko01000	-	-	-	MTHFR
DYD3_k127_1771561_0	1380394.JADL01000001_gene2794	1.112e-160	511.0	COG0646@1|root,COG1410@1|root,COG0646@2|Bacteria,COG1410@2|Bacteria,1MV6G@1224|Proteobacteria,2TQTG@28211|Alphaproteobacteria,2JQ1S@204441|Rhodospirillales	204441|Rhodospirillales	E	Methionine synthase	metH	-	2.1.1.13	ko:K00548	ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230	M00017	R00946,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	B12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans
DYD3_k127_1793278_17	1110502.TMO_1397	7.173e-10	67.0	COG1989@1|root,COG1989@2|Bacteria	2|Bacteria	NOU	aspartic-type endopeptidase activity	gspO	-	3.4.23.43	ko:K02464,ko:K02654	ko03070,map03070	M00331	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	DiS_P_DiS,Peptidase_A24
DYD3_k127_1793278_10	113395.AXAI01000001_gene2850	9.81e-43	167.0	COG0368@1|root,COG0368@2|Bacteria,1RHCC@1224|Proteobacteria,2U97D@28211|Alphaproteobacteria,3JUE6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate	cobS	-	2.7.8.26	ko:K02233	ko00860,ko01100,map00860,map01100	M00122	R05223,R11174	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	CobS
DYD3_k127_1793278_6	1116369.KB890024_gene2777	8.529e-111	369.0	COG2038@1|root,COG2038@2|Bacteria,1MVAM@1224|Proteobacteria,2TQS6@28211|Alphaproteobacteria,43IGE@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	H	Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB)	cobT	GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008939,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.4.2.21	ko:K00768	ko00860,ko01100,map00860,map01100	M00122	R04148	RC00033,RC00063	ko00000,ko00001,ko00002,ko01000	-	-	-	DBI_PRT
DYD3_k127_1793278_8	438753.AZC_1503	3.015e-92	308.0	COG1396@1|root,COG3837@1|root,COG1396@2|Bacteria,COG3837@2|Bacteria,1MVQY@1224|Proteobacteria,2U070@28211|Alphaproteobacteria,3EYZG@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Cro/C1-type HTH DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2,HTH_3,HTH_31
DYD3_k127_1793278_7	1177928.TH2_18451	9.669e-110	360.0	COG4221@1|root,COG4221@2|Bacteria,1MUF8@1224|Proteobacteria,2TR5S@28211|Alphaproteobacteria,2JQNA@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	ydfG	-	1.1.1.381	ko:K16066	ko00240,ko00260,ko01100,map00240,map00260,map01100	-	R09289,R10851,R10852	RC00087,RC00525,RC03288	ko00000,ko00001,ko01000	-	-	-	adh_short
DYD3_k127_1793278_0	1207063.P24_01235	2.835e-229	716.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,2JVGT@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	2.6.1.18	ko:K00822	ko00280,ko00410,ko00640,ko01100,map00280,map00410,map00640,map01100	-	R00907,R04187	RC00008,RC00062,RC00160	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_1793278_15	1144310.PMI07_003969	1.977e-25	108.0	COG3668@1|root,COG3668@2|Bacteria,1N7G9@1224|Proteobacteria,2UF5G@28211|Alphaproteobacteria,4BHPE@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	yacB	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_1793278_16	399739.Pmen_3761	5.39e-24	104.0	COG3905@1|root,COG3905@2|Bacteria,1N30A@1224|Proteobacteria,1T0QE@1236|Gammaproteobacteria,1YJTG@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	K	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1793278_2	1207063.P24_01240	4.356e-189	607.0	COG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,2JQYG@204441|Rhodospirillales	204441|Rhodospirillales	K	COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
DYD3_k127_1793278_1	1207063.P24_01245	1.231e-202	636.0	COG0687@1|root,COG0687@2|Bacteria,1MU12@1224|Proteobacteria,2U060@28211|Alphaproteobacteria,2JRE6@204441|Rhodospirillales	204441|Rhodospirillales	E	Bacterial extracellular solute-binding protein	-	-	-	ko:K11069	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	SBP_bac_8,TAT_signal
DYD3_k127_1793278_3	1207063.P24_01250	4.251e-151	485.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,2JQ1Z@204441|Rhodospirillales	204441|Rhodospirillales	E	ATPases associated with a variety of cellular activities	-	-	3.6.3.31	ko:K11072	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.11.1	-	-	ABC_tran,TOBE_2
DYD3_k127_1793278_4	1207063.P24_01255	1.67e-143	463.0	COG1176@1|root,COG1176@2|Bacteria,1MW9Y@1224|Proteobacteria,2TTFC@28211|Alphaproteobacteria,2JPJ1@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K11071	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_1793278_5	1207063.P24_01260	4.403e-124	414.0	COG1177@1|root,COG1177@2|Bacteria,1MWVC@1224|Proteobacteria,2TV8E@28211|Alphaproteobacteria,2JQD9@204441|Rhodospirillales	204441|Rhodospirillales	E	COG1177 ABC-type spermidine putrescine transport system, permease component II	-	-	-	ko:K11070	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_1793278_9	1207063.P24_08264	1.353e-91	323.0	COG0477@1|root,COG2814@2|Bacteria,1R48H@1224|Proteobacteria,2UGNW@28211|Alphaproteobacteria,2JU4F@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_1793278_11	572477.Alvin_1396	1.424e-42	162.0	COG2862@1|root,COG2862@2|Bacteria,1RANN@1224|Proteobacteria,1S2DE@1236|Gammaproteobacteria,1WY01@135613|Chromatiales	135613|Chromatiales	S	TIGRFAM TIGR00645 family protein	-	-	-	-	-	-	-	-	-	-	-	-	UPF0114
DYD3_k127_1793278_14	1041146.ATZB01000034_gene615	1.425e-28	117.0	COG4691@1|root,COG4691@2|Bacteria,1Q6T3@1224|Proteobacteria,2VCVH@28211|Alphaproteobacteria,4BJYP@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Plasmid stability protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1793278_13	1079460.ATTQ01000021_gene4257	2.051e-36	141.0	COG4113@1|root,COG4113@2|Bacteria,1N7ET@1224|Proteobacteria,2UG7M@28211|Alphaproteobacteria,4BG2A@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	PIN domain	-	-	-	ko:K07065	-	-	-	-	ko00000	-	-	-	PIN
DYD3_k127_1793278_12	1121861.KB899925_gene2553	2.565e-37	147.0	COG1073@1|root,COG1073@2|Bacteria,1N319@1224|Proteobacteria,2USUP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6,Peptidase_S9
DYD3_k127_1801784_3	1038869.AXAN01000009_gene4838	8.388e-12	69.0	COG3624@1|root,COG3624@2|Bacteria,1MZTZ@1224|Proteobacteria,2VV43@28216|Betaproteobacteria,1K7UB@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Phosphonate C-P lyase system protein PhnG	phnG	-	2.7.8.37	ko:K06166	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	PhnG
DYD3_k127_1801784_2	1123060.JONP01000015_gene4397	2.633e-44	169.0	COG3625@1|root,COG3625@2|Bacteria,1RHXN@1224|Proteobacteria,2U9PC@28211|Alphaproteobacteria,2JTEW@204441|Rhodospirillales	204441|Rhodospirillales	P	Bacterial phosphonate metabolism protein (PhnH)	phnH	-	2.7.8.37	ko:K06165	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	PhnH
DYD3_k127_1801784_0	1110502.TMO_2100	1.929e-154	498.0	COG3626@1|root,COG3626@2|Bacteria,1MUBA@1224|Proteobacteria,2TR4C@28211|Alphaproteobacteria,2JR9W@204441|Rhodospirillales	204441|Rhodospirillales	P	phosphonate metabolism	-	-	2.7.8.37	ko:K06164	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	PhnI
DYD3_k127_1801784_1	1089552.KI911559_gene3159	1.252e-129	427.0	COG3627@1|root,COG3627@2|Bacteria,1MV7T@1224|Proteobacteria,2TRKP@28211|Alphaproteobacteria,2JQ22@204441|Rhodospirillales	204441|Rhodospirillales	P	Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose	-	-	4.7.1.1	ko:K06163	ko00440,map00440	-	R10204	RC03078,RC03079	ko00000,ko00001,ko01000	-	-	-	PhnJ
DYD3_k127_1803923_4	1380394.JADL01000003_gene4875	4.776e-14	72.0	COG1733@1|root,COG1733@2|Bacteria,1RHQK@1224|Proteobacteria,2UAWX@28211|Alphaproteobacteria,2JSSS@204441|Rhodospirillales	204441|Rhodospirillales	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_1803923_1	331869.BAL199_19081	1.974e-201	638.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2TSMQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	Mate efflux family protein	-	-	-	-	-	-	-	-	-	-	-	-	MatE
DYD3_k127_1803923_3	1038859.AXAU01000005_gene5259	2.397e-102	341.0	COG3541@1|root,COG3541@2|Bacteria,1MYFT@1224|Proteobacteria,2U7ZX@28211|Alphaproteobacteria,3JX7G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted nucleotidyltransferase	-	-	-	ko:K07074	-	-	-	-	ko00000	-	-	-	Nuc-transf
DYD3_k127_1803923_2	1089551.KE386572_gene122	1.957e-127	419.0	COG3180@1|root,COG3180@2|Bacteria,1MUFS@1224|Proteobacteria,2TUUX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Ammonia monooxygenase	abrB	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K07120	-	-	-	-	ko00000	-	-	-	AbrB
DYD3_k127_1803923_0	1523503.JPMY01000028_gene301	5.221e-313	977.0	COG0439@1|root,COG4799@1|root,COG0439@2|Bacteria,COG4799@2|Bacteria,1MU4H@1224|Proteobacteria,1RQ9Q@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Biotin carboxylase	pyc	-	-	-	-	-	-	-	-	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,Carboxyl_trans
DYD3_k127_1805005_2	314287.GB2207_04239	1.102e-128	414.0	COG2834@1|root,COG2834@2|Bacteria,1Q1FQ@1224|Proteobacteria,1RYIY@1236|Gammaproteobacteria,1J4QS@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	M	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_1805005_12	1122603.ATVI01000007_gene1783	8.868e-80	277.0	COG1028@1|root,COG1028@2|Bacteria,1PBCC@1224|Proteobacteria,1RYPI@1236|Gammaproteobacteria,1X9GS@135614|Xanthomonadales	135614|Xanthomonadales	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_1805005_16	163908.KB235896_gene285	6.96e-42	161.0	29Z8H@1|root,30M6K@2|Bacteria,1GGGV@1117|Cyanobacteria	1117|Cyanobacteria	S	Protein of unknown function (DUF3237)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3237
DYD3_k127_1805005_4	402881.Plav_1147	7.381e-124	406.0	COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2TQYM@28211|Alphaproteobacteria,1JNS3@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	PFAM Alcohol dehydrogenase zinc-binding domain protein	-	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
DYD3_k127_1805005_15	1267005.KB911257_gene812	3.027e-44	170.0	COG2186@1|root,COG2186@2|Bacteria,1PH9I@1224|Proteobacteria,2V810@28211|Alphaproteobacteria,3N8N7@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_1805005_1	1071679.BG57_12035	1.046e-150	484.0	COG0451@1|root,COG0451@2|Bacteria,1MXJ1@1224|Proteobacteria,2VQ6U@28216|Betaproteobacteria,1KG71@119060|Burkholderiaceae	28216|Betaproteobacteria	GM	NAD dependent epimerase/dehydratase family	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase,NAD_binding_10
DYD3_k127_1805005_0	1122132.AQYH01000005_gene748	2.388e-164	529.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,4BCEY@82115|Rhizobiaceae	28211|Alphaproteobacteria	H	Aminotransferase class-III	-	-	2.6.1.77	ko:K03851	ko00430,ko01100,map00430,map01100	-	R05652	RC00008,RC00062	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_1805005_14	1320556.AVBP01000001_gene4202	6.992e-70	248.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TQVU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
DYD3_k127_1805005_3	1267005.KB911257_gene819	4.048e-126	415.0	COG0683@1|root,COG0683@2|Bacteria,1MWYP@1224|Proteobacteria,2TTAM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
DYD3_k127_1805005_10	1267005.KB911257_gene818	2.965e-87	304.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TSCA@28211|Alphaproteobacteria,3N70Q@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01996,ko:K11958	ko02010,ko02024,map02010,map02024	M00237,M00322	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4,3.A.1.4.2,3.A.1.4.6	-	-	ABC_tran
DYD3_k127_1805005_9	1267005.KB911257_gene817	9.103e-97	325.0	COG0559@1|root,COG0559@2|Bacteria,1MU25@1224|Proteobacteria,2TSDS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	livH	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
DYD3_k127_1805005_8	1267005.KB911257_gene816	3.078e-102	347.0	COG4177@1|root,COG4177@2|Bacteria,1R9IW@1224|Proteobacteria,2TWGB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
DYD3_k127_1805005_5	1323663.AROI01000008_gene2466	3.982e-108	358.0	COG5285@1|root,COG5285@2|Bacteria,1MXBX@1224|Proteobacteria	1224|Proteobacteria	Q	Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_1805005_7	1323663.AROI01000008_gene2466	5.502e-106	364.0	COG5285@1|root,COG5285@2|Bacteria,1MXBX@1224|Proteobacteria	1224|Proteobacteria	Q	Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_1805005_19	1500893.JQNB01000001_gene1345	0.0002622	49.0	COG0251@1|root,COG0251@2|Bacteria,1MZ3J@1224|Proteobacteria,1S5XS@1236|Gammaproteobacteria,1X6CE@135614|Xanthomonadales	135614|Xanthomonadales	J	endoribonuclease	yjgF	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_1805005_6	1121033.AUCF01000024_gene219	1.586e-107	355.0	COG1028@1|root,COG1028@2|Bacteria,1MWCY@1224|Proteobacteria,2TT44@28211|Alphaproteobacteria,2JP9J@204441|Rhodospirillales	204441|Rhodospirillales	IQ	KR domain	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_1805005_18	172088.AUGA01000014_gene2992	2.984e-25	115.0	COG2197@1|root,COG2197@2|Bacteria,1PFF2@1224|Proteobacteria,2U10X@28211|Alphaproteobacteria,3JUPT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
DYD3_k127_1805005_13	663610.JQKO01000013_gene1796	5.102e-70	246.0	COG3565@1|root,COG3565@2|Bacteria,1RD7C@1224|Proteobacteria,2U78G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	dioxygenase of extradiol dioxygenase family	-	-	-	ko:K06991	-	-	-	-	ko00000	-	-	-	Glyoxalase
DYD3_k127_1805005_11	1279038.KB907338_gene1109	1.662e-81	280.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,2JQUN@204441|Rhodospirillales	204441|Rhodospirillales	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1805005_17	1095769.CAHF01000018_gene846	2.401e-32	130.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VHEI@28216|Betaproteobacteria	28216|Betaproteobacteria	IQ	PFAM AMP-dependent synthetase and ligase	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_1806318_0	631454.N177_1943	0.0	1729.0	COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,2TS2I@28211|Alphaproteobacteria,1JN1R@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen	nrdJ	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_2_N,Ribonuc_red_lgC
DYD3_k127_1806318_1	402881.Plav_2948	6.506e-190	612.0	COG0608@1|root,COG0608@2|Bacteria,1MU1M@1224|Proteobacteria,2TRZQ@28211|Alphaproteobacteria,1JN7S@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	DHH family	recJ	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360	-	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DHH,DHHA1
DYD3_k127_1806318_2	314254.OA2633_05056	6.591e-21	100.0	COG1605@1|root,COG1605@2|Bacteria,1N6UE@1224|Proteobacteria,2VGVR@28211|Alphaproteobacteria,44140@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Chorismate mutase type II	-	-	4.2.99.21	ko:K04782	ko01053,ko01110,ko01130,map01053,map01110,map01130	-	R06602	RC01549,RC02148	ko00000,ko00001,ko01000	-	-	-	CM_2
DYD3_k127_182049_7	1382303.JPOM01000001_gene1299	1.459e-105	355.0	COG0115@1|root,COG0115@2|Bacteria,1MVAT@1224|Proteobacteria,2TR7R@28211|Alphaproteobacteria,2KF88@204458|Caulobacterales	204458|Caulobacterales	EH	Catalyzes the transamination of D-amino acids and their alpha-keto acids	-	-	2.6.1.21	ko:K00824	ko00310,ko00330,ko00360,ko00472,ko00473,ko01100,map00310,map00330,map00360,map00472,map00473,map01100	-	R01148,R01582,R02459,R02851,R02924,R05053	RC00006,RC00008,RC00025	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_4
DYD3_k127_182049_2	402881.Plav_3127	1.063e-192	611.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQW2@28211|Alphaproteobacteria,1JNQ5@119043|Rhodobiaceae	28211|Alphaproteobacteria	T	Sigma-54 interaction domain	ntrX	-	-	ko:K13599	ko02020,map02020	M00498	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD3_k127_182049_1	1238182.C882_2780	1.067e-220	709.0	COG5000@1|root,COG5000@2|Bacteria,1MWKZ@1224|Proteobacteria,2TQTB@28211|Alphaproteobacteria,2JQ5G@204441|Rhodospirillales	204441|Rhodospirillales	T	COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	ntrY	-	2.7.13.3	ko:K13598	ko02020,map02020	M00498	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,PAS,PAS_4
DYD3_k127_182049_0	1380394.JADL01000005_gene5484	1.049e-234	734.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,2JPK4@204441|Rhodospirillales	204441|Rhodospirillales	T	COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	ntrC	-	-	ko:K07712	ko02020,map02020	M00497	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD3_k127_182049_5	402881.Plav_3130	1.823e-137	449.0	COG3852@1|root,COG3852@2|Bacteria,1MVN6@1224|Proteobacteria,2TQS1@28211|Alphaproteobacteria,1JNGE@119043|Rhodobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	ntrB	-	2.7.13.3	ko:K07708	ko02020,map02020	M00497	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_4
DYD3_k127_182049_4	1430440.MGMSRv2_1151	7.334e-140	451.0	COG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,2TRC8@28211|Alphaproteobacteria,2JP9I@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	dusB	-	-	ko:K05540	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Dus
DYD3_k127_182049_6	1121033.AUCF01000006_gene4314	3.233e-136	443.0	COG0245@1|root,COG1211@1|root,COG0245@2|Bacteria,COG1211@2|Bacteria,1MVHA@1224|Proteobacteria,2TRQC@28211|Alphaproteobacteria,2JPA7@204441|Rhodospirillales	204441|Rhodospirillales	I	Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	ispDF	-	2.7.7.60,4.6.1.12	ko:K12506	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05633,R05637	RC00002,RC01440	ko00000,ko00001,ko00002,ko01000	-	-	-	IspD,YgbB
DYD3_k127_182049_10	1207063.P24_04839	7.436e-39	161.0	COG1267@1|root,COG1267@2|Bacteria,1MZJA@1224|Proteobacteria,2UGK6@28211|Alphaproteobacteria,2JTIM@204441|Rhodospirillales	204441|Rhodospirillales	I	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)	pgpA	-	3.1.3.27	ko:K01095	ko00564,ko01100,map00564,map01100	-	R02029	RC00017	ko00000,ko00001,ko01000	-	-	-	PgpA
DYD3_k127_182049_8	670292.JH26_00720	1.718e-54	203.0	COG1546@1|root,COG1546@2|Bacteria,1RH2Y@1224|Proteobacteria,2U94H@28211|Alphaproteobacteria,1JV1N@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the CinA family	cinA	-	3.5.1.42	ko:K03743	ko00760,map00760	-	R02322	RC00100	ko00000,ko00001,ko01000	-	-	-	CinA
DYD3_k127_182049_9	570952.ATVH01000011_gene137	9.418e-42	158.0	COG2867@1|root,COG2867@2|Bacteria,1RGUH@1224|Proteobacteria,2U7D8@28211|Alphaproteobacteria,2JSA6@204441|Rhodospirillales	204441|Rhodospirillales	I	COG2867 Oligoketide cyclase lipid transport protein	-	-	-	ko:K18588	-	-	-	-	ko00000	-	-	-	Polyketide_cyc
DYD3_k127_182049_3	1207063.P24_04854	3.191e-141	452.0	COG0320@1|root,COG0320@2|Bacteria,1MVRD@1224|Proteobacteria,2TRP3@28211|Alphaproteobacteria,2JQJB@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	lipA	-	2.8.1.8	ko:K03644	ko00785,ko01100,map00785,map01100	-	R07767,R07768	RC01978	ko00000,ko00001,ko01000	-	-	-	LIAS_N,Radical_SAM
DYD3_k127_182529_1	1150626.PHAMO_10193	1.485e-54	194.0	COG1329@1|root,COG1329@2|Bacteria,1MWI2@1224|Proteobacteria,2TTVP@28211|Alphaproteobacteria,2JRY7@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional regulator	ydeB	-	-	ko:K07736	-	-	-	-	ko00000,ko03000	-	-	-	CarD_CdnL_TRCF
DYD3_k127_182529_0	414684.RC1_2224	5.758e-84	287.0	COG0639@1|root,COG0639@2|Bacteria,1NPR1@1224|Proteobacteria,2U19D@28211|Alphaproteobacteria,2JPXQ@204441|Rhodospirillales	204441|Rhodospirillales	T	COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases	-	-	3.1.3.16	ko:K07313	-	-	-	-	ko00000,ko01000	-	-	-	-
DYD3_k127_182529_2	402881.Plav_1691	2.424e-19	91.0	COG1525@1|root,COG1525@2|Bacteria,1R3VA@1224|Proteobacteria,2U0NK@28211|Alphaproteobacteria,1JPDG@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	Staphylococcal nuclease homologue	-	-	-	-	-	-	-	-	-	-	-	-	SNase
DYD3_k127_183468_0	269796.Rru_A2038	5.389e-106	360.0	COG1225@1|root,COG1391@1|root,COG1225@2|Bacteria,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,2TRY7@28211|Alphaproteobacteria,2JPFA@204441|Rhodospirillales	204441|Rhodospirillales	H	Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell	glnE	-	2.7.7.42,2.7.7.89	ko:K00982	-	-	-	-	ko00000,ko01000	-	-	-	GlnD_UR_UTase,GlnE
DYD3_k127_183468_1	1122613.ATUP01000001_gene221	6.904e-65	224.0	COG1225@1|root,COG1225@2|Bacteria,1RD4R@1224|Proteobacteria,2U6Z9@28211|Alphaproteobacteria,43XNH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	O	Bacterioferritin comigratory protein	bcp	-	1.11.1.15	ko:K03564	-	-	-	-	ko00000,ko01000	-	-	-	AhpC-TSA
DYD3_k127_1841056_4	358220.C380_02820	1.909e-78	271.0	COG1024@1|root,COG1024@2|Bacteria,1R3Q4@1224|Proteobacteria,2VP7N@28216|Betaproteobacteria,4A9JF@80864|Comamonadaceae	28216|Betaproteobacteria	I	PFAM Enoyl-CoA hydratase isomerase	-	-	4.1.2.41,4.2.1.101	ko:K18383	ko00360,ko01100,ko01110,map00360,map01100,map01110	-	R05772,R05773	RC00307,RC01468,RC01828	ko00000,ko00001,ko01000	-	-	-	ECH_1
DYD3_k127_1841056_11	469383.Cwoe_1821	1.478e-40	170.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_1841056_6	1282876.BAOK01000001_gene3242	4.442e-73	268.0	COG0657@1|root,COG0657@2|Bacteria,1NEXK@1224|Proteobacteria,2U5X1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Alpha beta hydrolase	-	-	-	ko:K01066	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_3
DYD3_k127_1841056_0	717785.HYPMC_2722	1.539e-168	539.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,2TVNW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Rieske 2Fe-2S	-	-	-	-	-	-	-	-	-	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_1841056_1	1120792.JAFV01000001_gene3887	3.125e-128	413.0	COG1402@1|root,COG1402@2|Bacteria,1MXR9@1224|Proteobacteria,2U4DC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Creatinine amidohydrolase	crnA	-	3.5.2.10	ko:K01470	ko00330,map00330	-	R01884	RC00615	ko00000,ko00001,ko01000	-	-	-	Creatininase
DYD3_k127_1841056_5	663932.KB902575_gene2578	3.424e-77	266.0	COG1028@1|root,COG1028@2|Bacteria,1MUD2@1224|Proteobacteria,2U59B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_1841056_2	717785.HYPMC_2724	2.526e-116	391.0	COG0583@1|root,COG0583@2|Bacteria,1PMTG@1224|Proteobacteria,2TV35@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1841056_12	1110502.TMO_3032	4.785e-29	121.0	COG2050@1|root,COG2050@2|Bacteria,1NJTZ@1224|Proteobacteria	1224|Proteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_1841056_10	1123072.AUDH01000056_gene111	9.325e-45	172.0	COG1434@1|root,COG1434@2|Bacteria,1MVW8@1224|Proteobacteria,2U6XK@28211|Alphaproteobacteria,2JT4G@204441|Rhodospirillales	204441|Rhodospirillales	S	DUF218 domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF218
DYD3_k127_1841056_9	402881.Plav_0456	1.206e-52	206.0	2AFUA@1|root,315WQ@2|Bacteria,1NHGB@1224|Proteobacteria,2TQWW@28211|Alphaproteobacteria,1JP4B@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Putative transmembrane protein (Alph_Pro_TM)	MA20_19830	-	-	-	-	-	-	-	-	-	-	-	Alph_Pro_TM
DYD3_k127_1841056_3	1123366.TH3_08809	1.805e-113	381.0	COG0730@1|root,COG0730@2|Bacteria,1MWX2@1224|Proteobacteria,2TRIC@28211|Alphaproteobacteria,2JPY5@204441|Rhodospirillales	204441|Rhodospirillales	S	membrane transporter protein	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
DYD3_k127_1841056_8	1123073.KB899242_gene1359	5.575e-53	192.0	COG0346@1|root,COG0346@2|Bacteria,1RH79@1224|Proteobacteria,1S9UN@1236|Gammaproteobacteria,1X7PG@135614|Xanthomonadales	135614|Xanthomonadales	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_1841056_7	402881.Plav_1268	2.894e-56	209.0	COG0152@1|root,COG0583@1|root,COG0152@2|Bacteria,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,1JQ5K@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_1853643_1	1121033.AUCF01000003_gene3448	5.214e-84	291.0	COG2114@1|root,COG2114@2|Bacteria,1MWHK@1224|Proteobacteria,2TR2J@28211|Alphaproteobacteria,2JQ73@204441|Rhodospirillales	204441|Rhodospirillales	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
DYD3_k127_1853643_2	1333998.M2A_0295	1.678e-45	173.0	COG0589@1|root,COG0589@2|Bacteria,1R9XB@1224|Proteobacteria,2U59E@28211|Alphaproteobacteria,4BR0J@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	T	Universal stress protein family	MA20_23830	-	-	-	-	-	-	-	-	-	-	-	Usp
DYD3_k127_1853643_0	1123366.TH3_01535	6.686e-95	326.0	COG5345@1|root,COG5345@2|Bacteria,1MWVH@1224|Proteobacteria,2U0ZR@28211|Alphaproteobacteria,2JRAT@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF2333
DYD3_k127_1853643_3	1158338.JNLJ01000001_gene389	9.101e-11	70.0	COG3093@1|root,COG3093@2|Bacteria	2|Bacteria	K	addiction module antidote protein HigA	vapL	-	-	ko:K21498	-	-	-	-	ko00000,ko02048	-	-	-	HTH_3,HTH_31
DYD3_k127_1857689_4	1040989.AWZU01000001_gene5663	5.715e-69	235.0	COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,2TS07@28211|Alphaproteobacteria,3JW9G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	-	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD3_k127_1857689_6	1411123.JQNH01000001_gene476	3.781e-49	178.0	COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,2U9AQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	groS	-	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
DYD3_k127_1857689_5	414684.RC1_3460	4.263e-65	233.0	COG0860@1|root,COG0860@2|Bacteria,1MUQK@1224|Proteobacteria,2USH4@28211|Alphaproteobacteria,2JWQR@204441|Rhodospirillales	204441|Rhodospirillales	M	Ami_3	-	-	3.5.1.28	ko:K01448	ko01503,map01503	M00727	R04112	RC00064,RC00141	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036	-	-	-	Amidase_3
DYD3_k127_1857689_9	1247963.JPHU01000012_gene866	1.541e-11	76.0	COG2363@1|root,COG2363@2|Bacteria,1MZX3@1224|Proteobacteria,2UGS5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	small membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF423
DYD3_k127_1857689_1	1238182.C882_2297	1.424e-153	494.0	COG0772@1|root,COG0772@2|Bacteria,1MUK3@1224|Proteobacteria,2TSM0@28211|Alphaproteobacteria,2JQAJ@204441|Rhodospirillales	204441|Rhodospirillales	M	Peptidoglycan polymerase that is essential for cell wall elongation	mrdB	-	-	ko:K05837	-	-	-	-	ko00000,ko03036	-	-	-	FTSW_RODA_SPOVE
DYD3_k127_1857689_7	414684.RC1_0994	2.239e-31	131.0	COG3932@1|root,COG3932@2|Bacteria,1MZD5@1224|Proteobacteria,2U77X@28211|Alphaproteobacteria,2JT65@204441|Rhodospirillales	204441|Rhodospirillales	S	Exopolysaccharide synthesis, ExoD	-	-	-	-	-	-	-	-	-	-	-	-	ExoD
DYD3_k127_1857689_8	240016.ABIZ01000001_gene5678	1.333e-17	89.0	2DQ56@1|root,334T2@2|Bacteria,46WN7@74201|Verrucomicrobia	74201|Verrucomicrobia	S	Domain of unknown function (DUF4262)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4262
DYD3_k127_1857689_0	1380391.JIAS01000020_gene1533	6.247e-206	663.0	COG0402@1|root,COG0402@2|Bacteria,1MX34@1224|Proteobacteria,2U0IN@28211|Alphaproteobacteria,2JR86@204441|Rhodospirillales	204441|Rhodospirillales	F	Amidohydrolase family	-	-	3.5.4.1	ko:K01485	ko00240,ko00330,ko01100,map00240,map00330,map01100	-	R00974,R01411,R02922	RC00074,RC00514,RC00809	ko00000,ko00001,ko01000	-	-	-	Amidohydro_3
DYD3_k127_1857689_2	765698.Mesci_1099	1.449e-131	428.0	COG1079@1|root,COG1079@2|Bacteria,1MVDQ@1224|Proteobacteria,2TSTD@28211|Alphaproteobacteria,43I92@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
DYD3_k127_1857689_3	1298858.AUEL01000012_gene5293	5.812e-101	336.0	COG4603@1|root,COG4603@2|Bacteria,1MX6V@1224|Proteobacteria,2TUGD@28211|Alphaproteobacteria,43GW8@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
DYD3_k127_1880515_0	1244869.H261_08298	1.16e-144	467.0	COG0189@1|root,COG0189@2|Bacteria,1MVUA@1224|Proteobacteria,2TQNE@28211|Alphaproteobacteria,2JPV4@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the prokaryotic GSH synthase family	gshB	-	6.3.2.3	ko:K01920	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00497,R10994	RC00096,RC00141	ko00000,ko00001,ko00002,ko01000	-	-	-	GSH-S_ATP,GSH-S_N
DYD3_k127_1880515_2	1122137.AQXF01000004_gene1543	4.721e-50	188.0	COG3829@1|root,COG3829@2|Bacteria,1RH32@1224|Proteobacteria,2U79H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	COG2202 FOG PAS PAC domain	-	-	-	-	-	-	-	-	-	-	-	-	PAS,PAS_3
DYD3_k127_1880515_1	1122137.AQXF01000005_gene1277	8.161e-70	254.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2U0XK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NT	methyl-accepting chemotaxis protein	-	-	-	-	-	-	-	-	-	-	-	-	MCPsignal
DYD3_k127_1880515_3	420324.KI912026_gene4731	1.733e-36	143.0	COG5485@1|root,COG5485@2|Bacteria,1RE0T@1224|Proteobacteria,2U870@28211|Alphaproteobacteria,1JWKP@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL
DYD3_k127_1880515_4	1282876.BAOK01000001_gene1455	8.223e-32	132.0	2DNUQ@1|root,32Z94@2|Bacteria,1N0SS@1224|Proteobacteria,2UFSC@28211|Alphaproteobacteria,4BT1H@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4281)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4281
DYD3_k127_1882986_2	1417296.U879_11550	6.442e-33	135.0	COG0799@1|root,COG0799@2|Bacteria,1MZEF@1224|Proteobacteria,2UBSV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation	rsfS	-	-	ko:K09710	-	-	-	-	ko00000,ko03009	-	-	-	RsfS
DYD3_k127_1882986_1	1121033.AUCF01000011_gene1856	3.92e-65	228.0	COG1057@1|root,COG1057@2|Bacteria,1RD0J@1224|Proteobacteria,2U6ZC@28211|Alphaproteobacteria,2JSCY@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)	nadD	-	2.7.7.18	ko:K00969	ko00760,ko01100,map00760,map01100	M00115	R00137,R03005	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
DYD3_k127_1882986_0	1110502.TMO_2969	1.14e-137	444.0	COG0014@1|root,COG0014@2|Bacteria,1MUGJ@1224|Proteobacteria,2TS83@28211|Alphaproteobacteria,2JQNS@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	proA	-	1.2.1.41	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	M00015	R03313	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_1882986_3	1384054.N790_02645	2.137e-08	56.0	COG0463@1|root,COG0463@2|Bacteria,1MXC1@1224|Proteobacteria,1RRHP@1236|Gammaproteobacteria,1X33S@135614|Xanthomonadales	135614|Xanthomonadales	M	PFAM Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_1886841_21	1349767.GJA_4133	2.77e-26	115.0	COG3219@1|root,COG3220@1|root,COG3219@2|Bacteria,COG3220@2|Bacteria,1MURE@1224|Proteobacteria,2VKD3@28216|Betaproteobacteria,475Z0@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Protein of unknown function (DUF692)	-	-	-	ko:K09930	-	-	-	-	ko00000	-	-	-	DUF2063,DUF692
DYD3_k127_1886841_7	1229205.BUPH_04631	2.424e-85	294.0	COG3220@1|root,COG3220@2|Bacteria,1MURE@1224|Proteobacteria,2VKD3@28216|Betaproteobacteria,1K0J2@119060|Burkholderiaceae	28216|Betaproteobacteria	S	belongs to the UPF0276 family	-	-	-	ko:K09930	-	-	-	-	ko00000	-	-	-	DUF692
DYD3_k127_1886841_22	1082933.MEA186_26451	3.782e-18	87.0	COG5572@1|root,COG5572@2|Bacteria,1MZ6Q@1224|Proteobacteria,2UJ9X@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Predicted integral membrane protein (DUF2282)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2282
DYD3_k127_1886841_15	1380391.JIAS01000003_gene1802	9.161e-45	170.0	COG1595@1|root,COG1595@2|Bacteria,1MVS7@1224|Proteobacteria,2UA8J@28211|Alphaproteobacteria,2JX09@204441|Rhodospirillales	204441|Rhodospirillales	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_1886841_13	666684.AfiDRAFT_1323	3.595e-51	192.0	COG4944@1|root,COG4944@2|Bacteria,1RDJJ@1224|Proteobacteria,2UT2Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1109)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1109
DYD3_k127_1886841_9	243924.LT42_11730	8.694e-73	250.0	COG0663@1|root,COG0663@2|Bacteria,1RD76@1224|Proteobacteria,1S3WC@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily	yrdA	-	-	-	-	-	-	-	-	-	-	-	Hexapep,Hexapep_2
DYD3_k127_1886841_20	935557.ATYB01000014_gene2568	1.745e-34	140.0	COG0625@1|root,COG0625@2|Bacteria,1RC4Y@1224|Proteobacteria,2U6JK@28211|Alphaproteobacteria,4BEAW@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
DYD3_k127_1886841_16	118168.MC7420_6544	3.758e-38	155.0	2DG8R@1|root,2ZUYV@2|Bacteria,1G8JI@1117|Cyanobacteria,1HC9E@1150|Oscillatoriales	1117|Cyanobacteria	H	Sulfotransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_1
DYD3_k127_1886841_3	1057002.KB905370_gene4292	3.656e-147	472.0	COG3181@1|root,COG3181@2|Bacteria,1MW18@1224|Proteobacteria,2TSKY@28211|Alphaproteobacteria,4B8S1@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	TctC
DYD3_k127_1886841_19	1320556.AVBP01000011_gene3389	2.225e-36	144.0	2D22U@1|root,3160H@2|Bacteria,1RGW1@1224|Proteobacteria,2U97W@28211|Alphaproteobacteria,43KCQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctB family	-	-	-	ko:K07794	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctB
DYD3_k127_1886841_0	1120792.JAFV01000001_gene1168	4.456e-244	761.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,36Z4F@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctA family	-	-	-	-	-	-	-	-	-	-	-	-	TctA
DYD3_k127_1886841_17	1280954.HPO_10135	7.325e-38	149.0	COG1970@1|root,COG1970@2|Bacteria,1RHG8@1224|Proteobacteria,2U99Y@28211|Alphaproteobacteria,43XXW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	M	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell	mscL	-	-	ko:K03282	-	-	-	-	ko00000,ko02000	1.A.22.1	-	-	MscL
DYD3_k127_1886841_2	543728.Vapar_6102	1.881e-155	501.0	COG3287@1|root,COG3287@2|Bacteria,1MVUZ@1224|Proteobacteria,2VJQD@28216|Betaproteobacteria,4AIEG@80864|Comamonadaceae	28216|Betaproteobacteria	S	FIST_C	-	-	-	-	-	-	-	-	-	-	-	-	FIST,FIST_C
DYD3_k127_1886841_4	1336235.JAEG01000008_gene1336	2.54e-109	366.0	COG2199@1|root,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2TU0D@28211|Alphaproteobacteria,4BFV2@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,Hemerythrin,PAS,PAS_3
DYD3_k127_1886841_14	420324.KI911956_gene3504	2.18e-49	182.0	COG1393@1|root,COG1393@2|Bacteria,1MZ6S@1224|Proteobacteria,2U98B@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the ArsC family	MA20_27840	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	-	ArsC
DYD3_k127_1886841_1	204773.HEAR0013	3.249e-190	599.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2VHDY@28216|Betaproteobacteria,4729Y@75682|Oxalobacteraceae	28216|Betaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	namA	-	1.3.1.34	ko:K00219	-	-	-	-	ko00000,ko01000	-	-	-	Oxidored_FMN
DYD3_k127_1886841_10	1218075.BAYA01000016_gene4528	1.405e-53	190.0	COG2343@1|root,COG2343@2|Bacteria,1RHXD@1224|Proteobacteria,2VT6R@28216|Betaproteobacteria,1K8CV@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Domain of unknown function (DUF427)	-	-	-	-	-	-	-	-	-	-	-	-	NTP_transf_9
DYD3_k127_1886841_5	375286.mma_0896	1.082e-102	340.0	COG1028@1|root,COG1028@2|Bacteria,1MUFX@1224|Proteobacteria,2VMB3@28216|Betaproteobacteria,4779T@75682|Oxalobacteraceae	28216|Betaproteobacteria	IQ	KR domain	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_1886841_8	395963.Bind_0187	6.091e-74	253.0	COG1309@1|root,COG1309@2|Bacteria,1RA4T@1224|Proteobacteria,2U0G2@28211|Alphaproteobacteria,3NCKR@45404|Beijerinckiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_13,TetR_N
DYD3_k127_1886841_6	1297742.A176_07440	1.897e-86	298.0	COG0625@1|root,COG0625@2|Bacteria,1NE6Z@1224|Proteobacteria,433UT@68525|delta/epsilon subdivisions,2X3JN@28221|Deltaproteobacteria,2YWCC@29|Myxococcales	28221|Deltaproteobacteria	O	Glutathione S-transferase, N-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_3,GST_N
DYD3_k127_1886841_11	450851.PHZ_c2631	3.192e-52	190.0	COG3832@1|root,COG3832@2|Bacteria,1RJ7U@1224|Proteobacteria,2U9W0@28211|Alphaproteobacteria,2KJ9D@204458|Caulobacterales	204458|Caulobacterales	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_1886841_12	450851.PHZ_c2632	4.078e-52	186.0	COG0640@1|root,COG0640@2|Bacteria,1RH5P@1224|Proteobacteria,2U960@28211|Alphaproteobacteria,2KH3Z@204458|Caulobacterales	204458|Caulobacterales	K	ArsR family transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_1886841_18	666685.R2APBS1_2510	1.737e-37	147.0	COG3795@1|root,COG3795@2|Bacteria,1N4SY@1224|Proteobacteria,1SZDJ@1236|Gammaproteobacteria,1XCUF@135614|Xanthomonadales	135614|Xanthomonadales	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
DYD3_k127_1886841_24	438753.AZC_2283	8.311e-10	70.0	COG3652@1|root,COG3652@2|Bacteria,1N6QU@1224|Proteobacteria,2UF70@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4142)	-	-	-	ko:K08995	-	-	-	-	ko00000	-	-	-	DUF4142
DYD3_k127_1886841_25	1380350.JIAP01000003_gene4858	7.062e-05	45.0	COG3832@1|root,COG3832@2|Bacteria,1RJJY@1224|Proteobacteria,2U9FZ@28211|Alphaproteobacteria,43MCS@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_1921593_6	1331660.L313_0235	4.02e-13	69.0	COG0446@1|root,COG1902@1|root,COG0446@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,1RNM8@1236|Gammaproteobacteria,3NIEV@468|Moraxellaceae	1236|Gammaproteobacteria	C	2,4-dienoyl-coA reductase	fadH	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0008670,GO:0009056,GO:0009062,GO:0009987,GO:0010181,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016628,GO:0019395,GO:0019752,GO:0030258,GO:0032553,GO:0032787,GO:0033542,GO:0033543,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0071949,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575	1.3.1.34	ko:K00219	-	-	-	-	ko00000,ko01000	-	-	-	Oxidored_FMN,Pyr_redox_2
DYD3_k127_1921593_5	1121033.AUCF01000001_gene2384	1.73e-17	87.0	2A16B@1|root,30PCB@2|Bacteria,1Q29I@1224|Proteobacteria,2V9PI@28211|Alphaproteobacteria,2JU5S@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	FliJ
DYD3_k127_1921593_0	1380394.JADL01000004_gene5790	4.018e-196	619.0	COG1157@1|root,COG1157@2|Bacteria,1MUH6@1224|Proteobacteria,2TRXU@28211|Alphaproteobacteria,2JPDY@204441|Rhodospirillales	204441|Rhodospirillales	NU	flagellum-specific ATP synthase	fliI	-	3.6.3.14	ko:K02412	ko02040,map02040	-	-	-	ko00000,ko00001,ko01000,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	ATP-synt_ab,ATP-synt_ab_N
DYD3_k127_1921593_1	1030157.AFMP01000019_gene645	1.502e-121	393.0	COG0745@1|root,COG0745@2|Bacteria,1MWVI@1224|Proteobacteria,2TRSP@28211|Alphaproteobacteria,2K0S8@204457|Sphingomonadales	204457|Sphingomonadales	T	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	ctrA	-	-	ko:K13584	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_1921593_4	745014.OMB55_00020090	5.157e-62	235.0	COG2267@1|root,COG2267@2|Bacteria,1QV06@1224|Proteobacteria,1T4A6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_1921593_2	1122137.AQXF01000003_gene2177	3.746e-108	357.0	COG1352@1|root,COG1352@2|Bacteria,1MU6W@1224|Proteobacteria,2TRQ3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NT	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP	cheR	-	2.1.1.80	ko:K00575	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko01000,ko02035	-	-	-	CheR,CheR_N
DYD3_k127_1921593_3	1316936.K678_04734	4.196e-79	271.0	COG2201@1|root,COG2201@2|Bacteria,1MWCN@1224|Proteobacteria,2TSGV@28211|Alphaproteobacteria,2JPP4@204441|Rhodospirillales	204441|Rhodospirillales	NT	catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR	cheB	-	3.1.1.61,3.5.1.44	ko:K03412	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko02022,ko02035	-	-	-	CheB_methylest,Response_reg
DYD3_k127_1934480_1	172088.AUGA01000002_gene5993	2.724e-100	334.0	COG0439@1|root,COG4770@1|root,COG4799@1|root,COG0439@2|Bacteria,COG4770@2|Bacteria,COG4799@2|Bacteria,1MU4H@1224|Proteobacteria,2TWYZ@28211|Alphaproteobacteria,3JUPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Biotin carboxylase C-terminal domain	MA20_04765	-	-	-	-	-	-	-	-	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,Carboxyl_trans
DYD3_k127_1934480_2	1280954.HPO_18360	7.865e-56	208.0	COG1408@1|root,COG1408@2|Bacteria,1RK37@1224|Proteobacteria,2VDM0@28211|Alphaproteobacteria,43YK0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	ko:K07098	-	-	-	-	ko00000	-	-	-	Metallophos
DYD3_k127_1934480_0	1177928.TH2_13624	2.608e-106	357.0	COG3608@1|root,COG3608@2|Bacteria,1N396@1224|Proteobacteria,2U17F@28211|Alphaproteobacteria,2JQE3@204441|Rhodospirillales	204441|Rhodospirillales	S	Succinylglutamate desuccinylase / Aspartoacylase family	-	-	-	ko:K06987	-	-	-	-	ko00000	-	-	-	AstE_AspA
DYD3_k127_1934480_3	1333998.M2A_2116	1.483e-52	190.0	COG2030@1|root,COG2030@2|Bacteria,1MUR2@1224|Proteobacteria,2TUM7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	dehydratase	MA20_35600	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydrat_N,MaoC_dehydratas
DYD3_k127_1937037_3	1248917.ANFX01000041_gene1733	6.812e-50	179.0	COG1742@1|root,COG1742@2|Bacteria,1MZI8@1224|Proteobacteria,2UBWY@28211|Alphaproteobacteria,2K68I@204457|Sphingomonadales	204457|Sphingomonadales	S	UPF0060 membrane protein	-	-	-	ko:K09771	-	-	-	-	ko00000,ko02000	2.A.7.26	-	-	UPF0060
DYD3_k127_1937037_0	1121106.JQKB01000020_gene2035	3.039e-134	452.0	COG0492@1|root,COG0492@2|Bacteria,1MW14@1224|Proteobacteria,2TSKU@28211|Alphaproteobacteria,2JQ1F@204441|Rhodospirillales	204441|Rhodospirillales	C	reductase	-	-	1.8.1.9	ko:K00384	ko00450,map00450	-	R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD3_k127_1937037_2	314345.SPV1_01182	1.468e-51	190.0	28N94@1|root,2ZBD8@2|Bacteria,1MWA4@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1937037_1	1089551.KE386572_gene426	5.303e-78	267.0	COG0518@1|root,COG0518@2|Bacteria,1Q2PQ@1224|Proteobacteria,2U196@28211|Alphaproteobacteria,4BS3A@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	PFAM Glutamine amidotransferase class-I	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
DYD3_k127_1960897_10	1279038.KB907337_gene624	5.65e-09	57.0	COG0331@1|root,COG0331@2|Bacteria,1MV6N@1224|Proteobacteria,2TRTT@28211|Alphaproteobacteria,2JQWI@204441|Rhodospirillales	204441|Rhodospirillales	I	malonyl CoA-acyl carrier protein transacylase	fabD	-	2.3.1.39	ko:K00645,ko:K15327	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	M00082	R01626,R11671	RC00004,RC00039,RC02727	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	-	-	-	Acyl_transf_1
DYD3_k127_1960897_1	316056.RPC_2300	5.496e-101	336.0	COG1028@1|root,COG1028@2|Bacteria,1MU6X@1224|Proteobacteria,2TQZG@28211|Alphaproteobacteria,3JW0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	fabG	GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_1960897_8	909943.HIMB100_00005960	5.674e-34	131.0	COG0236@1|root,COG0236@2|Bacteria,1MZ4P@1224|Proteobacteria,2UBWW@28211|Alphaproteobacteria,4BQIU@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis	acpP	GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	-	ko:K02078	-	-	-	-	ko00000,ko00001	-	-	-	PP-binding
DYD3_k127_1960897_0	288000.BBta_3820	2.409e-203	640.0	COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2TR32@28211|Alphaproteobacteria,3JU0T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	fabF	GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
DYD3_k127_1960897_2	1207063.P24_04145	9.012e-97	326.0	COG1559@1|root,COG1559@2|Bacteria,1MUQF@1224|Proteobacteria,2TR89@28211|Alphaproteobacteria,2JPD0@204441|Rhodospirillales	204441|Rhodospirillales	S	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	mltG	-	-	ko:K07082	-	-	-	-	ko00000	-	-	-	YceG
DYD3_k127_1960897_5	402881.Plav_3355	5.543e-79	273.0	COG1561@1|root,COG1561@2|Bacteria,1MWRA@1224|Proteobacteria,2TS81@28211|Alphaproteobacteria,1JNYY@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1732)	yicC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	DUF1732,YicC_N
DYD3_k127_1960897_4	1380391.JIAS01000017_gene458	5.635e-91	304.0	COG0194@1|root,COG0194@2|Bacteria,1MW92@1224|Proteobacteria,2TSCQ@28211|Alphaproteobacteria,2JPXS@204441|Rhodospirillales	204441|Rhodospirillales	F	Essential for recycling GMP and indirectly, cGMP	gmk	-	2.7.4.8	ko:K00942	ko00230,ko01100,map00230,map01100	M00050	R00332,R02090	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_kin
DYD3_k127_1960897_7	172088.AUGA01000004_gene3855	1.485e-50	186.0	COG2717@1|root,COG2717@2|Bacteria,1R4CY@1224|Proteobacteria,2U37R@28211|Alphaproteobacteria,3JUKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain	-	-	-	-	-	-	-	-	-	-	-	-	Ferric_reduct
DYD3_k127_1960897_6	398525.KB900701_gene6598	3.19e-52	191.0	COG1309@1|root,COG1309@2|Bacteria,1PAAI@1224|Proteobacteria,2TRN6@28211|Alphaproteobacteria,3JUU1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
DYD3_k127_1960897_3	1231190.NA8A_05058	7.24e-95	323.0	COG0412@1|root,COG0412@2|Bacteria,1MW7S@1224|Proteobacteria,2TTPH@28211|Alphaproteobacteria,43GTY@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	Q	dienelactone hydrolase	dlhH	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
DYD3_k127_1960897_9	1384054.N790_01995	4.723e-20	91.0	COG3000@1|root,COG3000@2|Bacteria,1QU0E@1224|Proteobacteria,1TMF5@1236|Gammaproteobacteria,1XBP6@135614|Xanthomonadales	135614|Xanthomonadales	I	Protein of unknown function (DUF3703)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3703
DYD3_k127_1966031_2	1038858.AXBA01000002_gene3813	6.48e-33	127.0	COG0665@1|root,COG0665@2|Bacteria,1MVM6@1224|Proteobacteria,2TRM7@28211|Alphaproteobacteria,3EY9Y@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Sarcosine oxidase beta subunit	soxB	-	1.5.3.1,1.5.99.5	ko:K00303,ko:K22084	ko00260,ko00680,ko01100,ko01120,map00260,map00680,map01100,map01120	-	R00609,R00610	RC00060,RC00190,RC00557	ko00000,ko00001,ko01000	-	-	-	DAO
DYD3_k127_1966031_1	1038858.AXBA01000002_gene3814	9.673e-36	137.0	COG4311@1|root,COG4311@2|Bacteria,1N8ED@1224|Proteobacteria,2UFIN@28211|Alphaproteobacteria,3EZUK@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Sarcosine oxidase, delta subunit family	soxD	-	1.5.3.1,1.5.99.5	ko:K00304,ko:K22085	ko00260,ko00680,ko01100,ko01120,map00260,map00680,map01100,map01120	-	R00609,R00610	RC00060,RC00190,RC00557	ko00000,ko00001,ko01000	-	-	-	SoxD
DYD3_k127_1966031_0	1125973.JNLC01000010_gene1908	9.006e-283	885.0	COG0404@1|root,COG0446@1|root,COG0404@2|Bacteria,COG0446@2|Bacteria,1MVEK@1224|Proteobacteria,2TTD7@28211|Alphaproteobacteria,3JTMR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glycine cleavage T-protein C-terminal barrel domain	soxA	-	1.5.3.1,1.5.99.5	ko:K00302,ko:K22086	ko00260,ko00680,ko01100,ko01120,map00260,map00680,map01100,map01120	-	R00609,R00610	RC00060,RC00190,RC00557	ko00000,ko00001,ko01000	-	-	-	FAD_oxidored,Fer2_4,GCV_T,GCV_T_C,Pyr_redox_2
DYD3_k127_1968178_4	1244869.H261_16296	4.745e-47	173.0	COG0501@1|root,COG0501@2|Bacteria,1MUV4@1224|Proteobacteria,2TS3N@28211|Alphaproteobacteria,2JPEI@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the peptidase M48B family	htpX	-	-	ko:K03799	-	M00743	-	-	ko00000,ko00002,ko01000,ko01002	-	-	-	Peptidase_M48
DYD3_k127_1968178_1	1356854.N007_14115	2.505e-176	558.0	COG0667@1|root,COG0667@2|Bacteria,1TQJC@1239|Firmicutes,4HC0W@91061|Bacilli	91061|Bacilli	C	Aldo keto reductase	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD3_k127_1968178_3	1336243.JAEA01000003_gene2390	1.89e-121	395.0	COG0656@1|root,COG0656@2|Bacteria,1MWFS@1224|Proteobacteria,2TT2Q@28211|Alphaproteobacteria,1JSUJ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM aldo keto reductase	dkgA	-	1.1.1.346	ko:K06221	-	-	R08878	RC00089	ko00000,ko01000	-	-	-	Aldo_ket_red
DYD3_k127_1968178_2	1282876.BAOK01000001_gene2108	4.697e-166	528.0	COG1902@1|root,COG1902@2|Bacteria,1MVIX@1224|Proteobacteria,2TT2F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NADH flavin oxidoreductase NADH oxidase	-	-	1.14.13.40	ko:K09461	ko00627,ko01120,map00627,map01120	-	R03998,R03999	RC00244	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN
DYD3_k127_1968178_0	269796.Rru_A1349	1.268e-262	821.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TQWP@28211|Alphaproteobacteria,2JQ0B@204441|Rhodospirillales	204441|Rhodospirillales	E	Gamma-glutamyltranspeptidase	-	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
DYD3_k127_1968178_5	1120792.JAFV01000001_gene1432	1.135e-45	167.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,36Y1R@31993|Methylocystaceae	28211|Alphaproteobacteria	E	Oligopeptide/dipeptide transporter, C-terminal region	MA20_14675	-	-	ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_1975959_4	1282876.BAOK01000001_gene1794	1.314e-16	82.0	2DH4Q@1|root,2ZYD4@2|Bacteria,1Q4A5@1224|Proteobacteria,2VASM@28211|Alphaproteobacteria,4BSYF@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3572)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3572
DYD3_k127_1975959_2	402881.Plav_2812	2.67e-64	228.0	COG0647@1|root,COG0647@2|Bacteria,1N3II@1224|Proteobacteria,2UE72@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	UMP catabolic process	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1975959_0	269796.Rru_A2630	5.604e-113	371.0	COG1940@1|root,COG1940@2|Bacteria,1MU94@1224|Proteobacteria,2TRRU@28211|Alphaproteobacteria,2JQ4F@204441|Rhodospirillales	204441|Rhodospirillales	GK	ROK family	-	-	2.7.1.4	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	-	R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	ROK
DYD3_k127_1975959_3	1121033.AUCF01000001_gene1901	4.749e-49	188.0	29APY@1|root,2ZXPR@2|Bacteria,1R817@1224|Proteobacteria,2TSBC@28211|Alphaproteobacteria,2JS59@204441|Rhodospirillales	204441|Rhodospirillales	S	Domain of unknown function (DUF1849)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1849
DYD3_k127_1975959_1	886293.Sinac_4749	1.503e-95	324.0	COG1167@1|root,COG1167@2|Bacteria,2IYEU@203682|Planctomycetes	203682|Planctomycetes	K	COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
DYD3_k127_1976117_2	443598.AUFA01000002_gene2645	6.463e-91	304.0	COG3173@1|root,COG3173@2|Bacteria,1MY0Y@1224|Proteobacteria,2TRMW@28211|Alphaproteobacteria,3JSBA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phosphotransferase enzyme family	MA20_16375	-	-	-	-	-	-	-	-	-	-	-	APH
DYD3_k127_1976117_5	316058.RPB_3603	2.496e-30	131.0	2DRHM@1|root,32UR4@2|Bacteria,1RCYI@1224|Proteobacteria,2UAAG@28211|Alphaproteobacteria,3JYQT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_1976117_0	1382303.JPOM01000001_gene1987	1.887e-236	742.0	COG1960@1|root,COG1960@2|Bacteria,1MWUU@1224|Proteobacteria,2TT47@28211|Alphaproteobacteria,2KFN1@204458|Caulobacterales	204458|Caulobacterales	C	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_1976117_1	509190.Cseg_0159	1.911e-187	593.0	COG0446@1|root,COG0446@2|Bacteria,1NR3M@1224|Proteobacteria,2TS0K@28211|Alphaproteobacteria,2KFCT@204458|Caulobacterales	204458|Caulobacterales	S	PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase	-	-	1.18.1.3	ko:K00529	ko00071,ko00360,ko01120,ko01220,map00071,map00360,map01120,map01220	M00545	R02000,R06782,R06783	RC00098	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Pyr_redox_2,Reductase_C
DYD3_k127_1976117_3	509190.Cseg_0160	1.438e-52	187.0	COG0633@1|root,COG0633@2|Bacteria,1RHDC@1224|Proteobacteria,2U97J@28211|Alphaproteobacteria,2KGS1@204458|Caulobacterales	204458|Caulobacterales	C	ferredoxin	-	-	-	ko:K04755	-	-	-	-	ko00000	-	-	-	Fer2
DYD3_k127_1976117_4	1282876.BAOK01000002_gene795	2.284e-44	164.0	COG0596@1|root,COG0596@2|Bacteria,1MWVN@1224|Proteobacteria,2TQVB@28211|Alphaproteobacteria,4BPWP@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Epoxide hydrolase N terminus	-	-	3.3.2.9	ko:K01253	ko00980,ko04976,ko05204,map00980,map04976,map05204	-	R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443	RC01447,RC01728,RC01764,RC02528	ko00000,ko00001,ko01000,ko01002	-	-	-	EHN
DYD3_k127_1976678_2	321327.CYA_2109	3.698e-120	397.0	COG1840@1|root,COG1840@2|Bacteria,1G0PQ@1117|Cyanobacteria,1GYC8@1129|Synechococcus	1117|Cyanobacteria	P	ABC-type Fe3 transport system, periplasmic component	afuA	-	-	ko:K02012	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.10	-	iJN678.sufA	SBP_bac_6,SBP_bac_8
DYD3_k127_1976678_4	1207063.P24_12232	8.158e-100	338.0	COG3490@1|root,COG3490@2|Bacteria,1NNS5@1224|Proteobacteria,2TTEJ@28211|Alphaproteobacteria,2JRT8@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1513)	-	-	-	ko:K09947	-	-	-	-	ko00000	-	-	-	DUF1513
DYD3_k127_1976678_5	1207063.P24_12237	5.437e-72	256.0	COG3489@1|root,COG3489@2|Bacteria,1MWBW@1224|Proteobacteria,2TRHU@28211|Alphaproteobacteria,2JT21@204441|Rhodospirillales	204441|Rhodospirillales	S	Imelysin	-	-	-	ko:K07338	-	-	-	-	ko00000	-	-	-	Peptidase_M75
DYD3_k127_1976678_6	571166.KI421509_gene3034	5.898e-65	229.0	COG3488@1|root,COG3488@2|Bacteria,1MXUW@1224|Proteobacteria,2TS75@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Thiol oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DHOR
DYD3_k127_1976678_1	1207063.P24_12242	2.539e-122	404.0	COG3488@1|root,COG3488@2|Bacteria,1MXUW@1224|Proteobacteria,2TS75@28211|Alphaproteobacteria,2JQDE@204441|Rhodospirillales	204441|Rhodospirillales	C	Di-haem oxidoreductase, putative peroxidase	-	-	-	-	-	-	-	-	-	-	-	-	DHOR
DYD3_k127_1976678_0	1122929.KB908221_gene2909	2.923e-172	550.0	COG3487@1|root,COG3487@2|Bacteria,1MX5H@1224|Proteobacteria,2TRMF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Iron-regulated protein	irpA	-	-	ko:K07231	-	-	-	-	ko00000	-	-	-	Peptidase_M75
DYD3_k127_1976678_3	716928.AJQT01000056_gene589	6.572e-118	415.0	COG0861@1|root,COG0861@2|Bacteria,1MUNR@1224|Proteobacteria,2TRRX@28211|Alphaproteobacteria,4B8JT@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Membrane protein TerC, possibly involved in tellurium resistance	terC	-	-	ko:K05794	-	-	-	-	ko00000	-	-	-	TerC
DYD3_k127_1976678_7	314260.PB2503_03372	2.607e-21	100.0	2DMJE@1|root,32RYR@2|Bacteria,1N7PS@1224|Proteobacteria,2UFEW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4112)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4112
DYD3_k127_1984030_2	402881.Plav_2541	4.216e-87	289.0	COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2TRI8@28211|Alphaproteobacteria,1JNIS@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	AAA domain (dynein-related subfamily)	MA20_01295	-	-	-	-	-	-	-	-	-	-	-	AAA,AAA_5
DYD3_k127_1984030_1	1238182.C882_0111	3.691e-195	616.0	COG3825@1|root,COG3825@2|Bacteria,1MUAJ@1224|Proteobacteria,2TS5P@28211|Alphaproteobacteria,2JQTH@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	ko:K09989	-	-	-	-	ko00000	-	-	-	VWA_CoxE
DYD3_k127_1984030_0	1110502.TMO_2915	8.178e-217	690.0	COG4303@1|root,COG4303@2|Bacteria,1MUR4@1224|Proteobacteria,2TTNA@28211|Alphaproteobacteria,2JPSE@204441|Rhodospirillales	204441|Rhodospirillales	E	Ethanolamine ammonia-lyase large subunit	eutB	-	4.3.1.7	ko:K03735	ko00564,ko01100,map00564,map01100	-	R00749	RC00370	ko00000,ko00001,ko01000	-	-	-	EutB
DYD3_k127_1984030_3	1110502.TMO_2916	5.504e-76	265.0	COG4302@1|root,COG4302@2|Bacteria,1MWQI@1224|Proteobacteria,2U5EU@28211|Alphaproteobacteria,2JRPJ@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the EutC family	eutC	-	4.3.1.7	ko:K03736	ko00564,ko01100,map00564,map01100	-	R00749	RC00370	ko00000,ko00001,ko01000	-	-	-	EutC
DYD3_k127_1984030_4	331869.BAL199_12631	4.607e-54	192.0	COG1028@1|root,COG1028@2|Bacteria,1MU5Y@1224|Proteobacteria,2TRNQ@28211|Alphaproteobacteria,4BPG6@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.30	ko:K00019	ko00072,ko00650,ko01100,map00072,map00650,map01100	M00088	R01361	RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short,adh_short_C2
DYD3_k127_2002780_1	1282876.BAOK01000001_gene2399	1.494e-70	244.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTMV@28211|Alphaproteobacteria,4BQWG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Zinc-binding dehydrogenase	MA20_28180	-	1.1.1.1	ko:K00001,ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_2002780_0	269796.Rru_A3734	5.397e-115	377.0	COG0008@1|root,COG0008@2|Bacteria,1MUN7@1224|Proteobacteria,2TR2V@28211|Alphaproteobacteria,2JPHU@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the class-I aminoacyl-tRNA synthetase family	gluQ	-	-	ko:K01894	-	-	-	-	ko00000,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_2002780_2	426117.M446_4879	1.897e-61	217.0	COG0400@1|root,COG0400@2|Bacteria,1RA02@1224|Proteobacteria,2TTWP@28211|Alphaproteobacteria,1JURF@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Phospholipase/Carboxylesterase	-	-	-	ko:K06999	-	-	-	-	ko00000	-	-	-	Abhydrolase_2
DYD3_k127_2003874_5	1038867.AXAY01000010_gene1063	5.028e-17	90.0	COG0500@1|root,COG2226@2|Bacteria,1R42G@1224|Proteobacteria,2U1CY@28211|Alphaproteobacteria,3JW23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_2003874_1	69279.BG36_18010	8.967e-159	520.0	COG2304@1|root,COG2304@2|Bacteria,1MUTS@1224|Proteobacteria,2TSQU@28211|Alphaproteobacteria,43H33@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	von Willebrand factor, type A	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	DUF3520,VWA,vWF_A
DYD3_k127_2003874_3	1218084.BBJK01000044_gene3894	1.157e-71	252.0	COG0583@1|root,COG0583@2|Bacteria,1QYAP@1224|Proteobacteria,2VNXN@28216|Betaproteobacteria,1K1KI@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_2003874_0	861208.AGROH133_12531	1.341e-174	550.0	COG0010@1|root,COG0010@2|Bacteria,1MVFH@1224|Proteobacteria,2TT0P@28211|Alphaproteobacteria,4BD8E@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Arginase family	-	-	3.5.3.11	ko:K01480	ko00330,ko01100,map00330,map01100	M00133	R01157	RC00024,RC00329	ko00000,ko00001,ko00002,ko01000	-	-	-	Arginase
DYD3_k127_2003874_2	1380391.JIAS01000015_gene237	1.608e-146	470.0	COG0010@1|root,COG0010@2|Bacteria,1MVFH@1224|Proteobacteria,2TQSZ@28211|Alphaproteobacteria,2JQHR@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0010 Arginase agmatinase formimionoglutamate hydrolase, arginase family	-	-	3.5.3.17	ko:K18459	-	-	-	-	ko00000,ko01000	-	-	-	Arginase
DYD3_k127_2003874_4	272630.MexAM1_META1p3117	3.716e-45	174.0	COG0454@1|root,COG0456@2|Bacteria,1MZUT@1224|Proteobacteria,2UB0P@28211|Alphaproteobacteria,1JZ94@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_2020763_3	1212548.B381_19414	2.917e-63	222.0	COG0600@1|root,COG0600@2|Bacteria,1MU6Q@1224|Proteobacteria,1S1W4@1236|Gammaproteobacteria,1Z0KC@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	P	COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component	nasE	-	-	ko:K15577	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16.1,3.A.1.16.2	-	-	BPD_transp_1
DYD3_k127_2020763_0	1430440.MGMSRv2_0185	7.949e-196	620.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,2JQF7@204441|Rhodospirillales	204441|Rhodospirillales	P	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	-	-	-	ko:K15576,ko:K22067	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000,ko02022	3.A.1.16.1,3.A.1.16.2	-	-	NMT1_2
DYD3_k127_2020763_1	1040986.ATYO01000002_gene4232	6.411e-152	492.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,43HW7@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	ABC-type nitrate sulfonate bicarbonate transport	nrt	-	-	ko:K15576,ko:K22067	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000,ko02022	3.A.1.16.1,3.A.1.16.2	-	-	NMT1_2
DYD3_k127_2020763_2	1040986.ATYO01000002_gene4233	9.409e-76	260.0	COG3707@1|root,COG3707@2|Bacteria,1MXDV@1224|Proteobacteria,2U220@28211|Alphaproteobacteria,43I53@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	T	response regulator receiver	nasT	-	-	ko:K07183	-	-	-	-	ko00000,ko02022	-	-	-	ANTAR,Response_reg
DYD3_k127_2020763_4	1333998.M2A_0885	5.554e-07	51.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1329)	IV02_13580	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_2040515_0	272560.BPSS1133	0.0	1041.0	COG0446@1|root,COG1902@1|root,COG0446@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2VIW3@28216|Betaproteobacteria,1K0B5@119060|Burkholderiaceae	28216|Betaproteobacteria	C	NADH flavin oxidoreductase NADH oxidase	fadH	-	1.3.1.34	ko:K00219	-	-	-	-	ko00000,ko01000	-	-	-	ECH_1,Oxidored_FMN,Pyr_redox_2
DYD3_k127_2040515_3	399739.Pmen_2950	1.304e-53	196.0	COG0446@1|root,COG0446@2|Bacteria,1QU0H@1224|Proteobacteria,1S8PV@1236|Gammaproteobacteria,1YG9K@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_2040515_2	398578.Daci_4271	2.878e-68	235.0	COG1695@1|root,COG1695@2|Bacteria,1RFWJ@1224|Proteobacteria,2VRTE@28216|Betaproteobacteria,4AENP@80864|Comamonadaceae	28216|Betaproteobacteria	K	Virulence activator alpha C-term	-	-	-	-	-	-	-	-	-	-	-	-	PadR,Vir_act_alpha_C
DYD3_k127_2040515_5	856793.MICA_754	1.447e-21	111.0	2CZCR@1|root,32T63@2|Bacteria,1N2RG@1224|Proteobacteria,2UDG9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2040515_1	1121033.AUCF01000001_gene2376	5.068e-86	292.0	COG0455@1|root,COG0455@2|Bacteria,1R8IW@1224|Proteobacteria,2TWWA@28211|Alphaproteobacteria,2JQPP@204441|Rhodospirillales	204441|Rhodospirillales	D	Belongs to the ParA family	-	-	-	ko:K04562	-	-	-	-	ko00000,ko02035	-	-	-	AAA_31,CbiA
DYD3_k127_2040515_4	1430440.MGMSRv2_3624	3.339e-27	116.0	COG1419@1|root,COG1419@2|Bacteria,1MUQW@1224|Proteobacteria,2U06N@28211|Alphaproteobacteria,2JP9H@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellar GTP-binding protein	flhF	-	-	ko:K02404	-	-	-	-	ko00000,ko02035	-	-	-	SRP54
DYD3_k127_2050686_4	398525.KB900701_gene3321	1.483e-39	153.0	COG3613@1|root,COG3613@2|Bacteria,1N0AK@1224|Proteobacteria,2UCQW@28211|Alphaproteobacteria,3JW97@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Nucleoside 2-deoxyribosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Nuc_deoxyrib_tr
DYD3_k127_2050686_3	1207063.P24_16310	3.068e-94	314.0	COG0625@1|root,COG0625@2|Bacteria,1MXM4@1224|Proteobacteria,2TTXD@28211|Alphaproteobacteria,2JRUQ@204441|Rhodospirillales	204441|Rhodospirillales	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_C_3,GST_N_3
DYD3_k127_2050686_0	1381123.AYOD01000035_gene3606	1.745e-153	494.0	COG1600@1|root,COG1600@2|Bacteria,1MV1H@1224|Proteobacteria,2TR5E@28211|Alphaproteobacteria,43GQ2@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)	queG	GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	1.17.99.6	ko:K18979	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DUF1730,Fer4_16,HEAT_2
DYD3_k127_2050686_1	1173024.KI912149_gene6263	6.409e-106	352.0	COG0454@1|root,COG1846@1|root,COG0456@2|Bacteria,COG1846@2|Bacteria,1GKR9@1117|Cyanobacteria,1JMKR@1189|Stigonemataceae	1117|Cyanobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_2050686_5	1380394.JADL01000001_gene2290	2.046e-26	124.0	COG0457@1|root,COG0457@2|Bacteria,1RK4Q@1224|Proteobacteria,2UBBB@28211|Alphaproteobacteria,2JSKY@204441|Rhodospirillales	204441|Rhodospirillales	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_9
DYD3_k127_2050686_2	1380394.JADL01000001_gene2286	7.194e-104	356.0	COG0451@1|root,COG0451@2|Bacteria,1MWVJ@1224|Proteobacteria,2TRDY@28211|Alphaproteobacteria,2JR11@204441|Rhodospirillales	204441|Rhodospirillales	GM	COG0451 Nucleoside-diphosphate-sugar epimerases	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase,NAD_binding_10
DYD3_k127_2055216_0	1121033.AUCF01000008_gene5633	1.533e-278	864.0	COG0056@1|root,COG0056@2|Bacteria,1MUG7@1224|Proteobacteria,2TQYK@28211|Alphaproteobacteria,2JQN1@204441|Rhodospirillales	204441|Rhodospirillales	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit	atpA	-	3.6.3.14	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
DYD3_k127_2055216_4	1187851.A33M_0848	7.604e-46	172.0	COG0712@1|root,COG0712@2|Bacteria,1MVRH@1224|Proteobacteria,2U5IC@28211|Alphaproteobacteria,3FD5W@34008|Rhodovulum	28211|Alphaproteobacteria	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpH	-	-	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	OSCP
DYD3_k127_2055216_9	1120999.JONM01000003_gene2773	5.155e-07	55.0	COG4118@1|root,COG4118@2|Bacteria	2|Bacteria	D	positive regulation of growth	-	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_2055216_5	682795.AciX8_3797	1.102e-23	106.0	COG5573@1|root,COG5573@2|Bacteria,3Y5UY@57723|Acidobacteria,2JK50@204432|Acidobacteriia	204432|Acidobacteriia	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_2055216_3	402881.Plav_0577	3.249e-130	432.0	COG2175@1|root,COG2175@2|Bacteria,1Q0C7@1224|Proteobacteria,2TRGF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA	-	-	-	-	-	-	-	-	-	-	-	-	TauD
DYD3_k127_2055216_2	1123504.JQKD01000003_gene463	3.275e-250	783.0	COG3653@1|root,COG3653@2|Bacteria,1MWWY@1224|Proteobacteria,2VJ3D@28216|Betaproteobacteria,4ACA8@80864|Comamonadaceae	28216|Betaproteobacteria	Q	Amidohydrolase family	-	-	3.5.1.81	ko:K06015	-	-	R02192	RC00064,RC00328	ko00000,ko01000	-	-	-	Amidohydro_3
DYD3_k127_2055216_7	1333998.M2A_2605	1.389e-18	92.0	COG1846@1|root,COG1846@2|Bacteria,1Q6UI@1224|Proteobacteria,2USAH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
DYD3_k127_2055216_1	1121033.AUCF01000008_gene5630	2.935e-259	821.0	COG1198@1|root,COG1198@2|Bacteria,1MUUZ@1224|Proteobacteria,2TQTQ@28211|Alphaproteobacteria,2JPAZ@204441|Rhodospirillales	204441|Rhodospirillales	L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA	priA	-	-	ko:K04066	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C
DYD3_k127_2055216_8	1532558.JL39_08465	1.271e-14	73.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,4B8SH@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_2102280_0	1380394.JADL01000020_gene1828	2.386e-302	947.0	COG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,2TQRR@28211|Alphaproteobacteria,2JPD6@204441|Rhodospirillales	204441|Rhodospirillales	L	This protein is involved in the repair of mismatches in DNA	mutS	-	-	ko:K03555	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
DYD3_k127_2102280_5	754035.Mesau_05099	1.674e-22	100.0	COG3668@1|root,COG3668@2|Bacteria,1N0YD@1224|Proteobacteria,2UD39@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Plasmid stabilization system	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_2102280_4	682795.AciX8_4804	2.769e-29	123.0	COG3609@1|root,COG3609@2|Bacteria	2|Bacteria	K	positive regulation of growth	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin,RHH_1
DYD3_k127_2102280_3	1380391.JIAS01000013_gene3808	2.251e-79	283.0	COG1802@1|root,COG1802@2|Bacteria,1RBD7@1224|Proteobacteria,2VFV6@28211|Alphaproteobacteria,2JYQ3@204441|Rhodospirillales	204441|Rhodospirillales	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_2102280_2	1089551.KE386572_gene2934	1.847e-132	433.0	COG3135@1|root,COG3135@2|Bacteria,1MUS1@1224|Proteobacteria,2TUEM@28211|Alphaproteobacteria,4BRJ2@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	Q	Benzoate membrane transport protein	ydcO	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K05782	-	-	-	-	ko00000,ko02000	2.A.46.1	-	-	BenE
DYD3_k127_2102280_1	1122929.KB908218_gene1545	8.322e-164	521.0	COG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Malic enzyme	tme	-	1.1.1.40	ko:K00029	ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200	M00169,M00172	R00216	RC00105	ko00000,ko00001,ko00002,ko01000	-	-	-	Malic_M,PTA_PTB,malic
DYD3_k127_2118190_0	420662.Mpe_A2270	3.185e-157	501.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,2VJ61@28216|Betaproteobacteria,1KK7I@119065|unclassified Burkholderiales	28216|Betaproteobacteria	S	MMPL family	-	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
DYD3_k127_2118190_1	1123367.C666_16235	3.745e-80	278.0	COG4447@1|root,COG4447@2|Bacteria,1R5ZV@1224|Proteobacteria,2VNAP@28216|Betaproteobacteria,2KVGC@206389|Rhodocyclales	206389|Rhodocyclales	S	Photosynthesis system II assembly factor YCF48	-	-	-	-	-	-	-	-	-	-	-	-	PSII_BNR
DYD3_k127_2123468_8	1282876.BAOK01000001_gene1220	6.645e-12	70.0	COG0193@1|root,COG0193@2|Bacteria,1MX1P@1224|Proteobacteria,2TT6Q@28211|Alphaproteobacteria,4BQ8B@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis	pth	GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101	3.1.1.29	ko:K01056	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	Pept_tRNA_hydro
DYD3_k127_2123468_0	745310.G432_07555	2.956e-167	533.0	COG0012@1|root,COG0012@2|Bacteria,1MVM4@1224|Proteobacteria,2TRAD@28211|Alphaproteobacteria,2K213@204457|Sphingomonadales	204457|Sphingomonadales	J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner	ychF	-	-	ko:K06942	-	-	-	-	ko00000,ko03009	-	-	-	MMR_HSR1,YchF-GTPase_C
DYD3_k127_2123468_5	75379.Tint_1101	3.521e-46	172.0	COG2030@1|root,COG2030@2|Bacteria,1RIBV@1224|Proteobacteria,2VTGX@28216|Betaproteobacteria,1KKWK@119065|unclassified Burkholderiales	28216|Betaproteobacteria	I	dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
DYD3_k127_2123468_6	706587.Desti_3256	9.664e-39	150.0	COG2030@1|root,COG2030@2|Bacteria,1RIBV@1224|Proteobacteria,42U27@68525|delta/epsilon subdivisions,2WR2V@28221|Deltaproteobacteria	28221|Deltaproteobacteria	I	MaoC like domain	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
DYD3_k127_2123468_3	402881.Plav_2252	1.257e-59	217.0	COG0412@1|root,COG0412@2|Bacteria,1MW7S@1224|Proteobacteria,2TTPH@28211|Alphaproteobacteria,1JQ7F@119043|Rhodobiaceae	28211|Alphaproteobacteria	Q	Dienelactone hydrolase family	MA20_23640	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
DYD3_k127_2123468_7	1282362.AEAC466_13980	4.153e-25	111.0	2DS5G@1|root,33EM3@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2123468_1	1380391.JIAS01000014_gene2331	7.302e-94	328.0	COG0501@1|root,COG0501@2|Bacteria,1MUV4@1224|Proteobacteria,2TS3N@28211|Alphaproteobacteria,2JW2V@204441|Rhodospirillales	204441|Rhodospirillales	O	Peptidase family M48	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48
DYD3_k127_2123468_4	309798.COPRO5265_0408	6.36e-49	182.0	COG1704@1|root,COG1704@2|Bacteria,1V3Z0@1239|Firmicutes,24IH4@186801|Clostridia,42G50@68295|Thermoanaerobacterales	186801|Clostridia	S	PFAM LemA family protein	lemA	-	-	ko:K03744	-	-	-	-	ko00000	-	-	-	LemA
DYD3_k127_2123468_2	1408418.JNJH01000095_gene444	1.05e-81	275.0	COG0005@1|root,COG0005@2|Bacteria,1MUWW@1224|Proteobacteria,2TSN3@28211|Alphaproteobacteria,2JPTI@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates	mtnP	-	2.4.2.28	ko:K00772	ko00270,ko01100,map00270,map01100	M00034	R01402	RC00063,RC02819	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
DYD3_k127_2126736_2	1411123.JQNH01000001_gene1028	4.405e-77	264.0	COG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,2U59K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine	aat	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0044424,GO:0044464,GO:0140096	2.3.2.6	ko:K00684	-	-	R03813,R11443,R11444	RC00055,RC00064	ko00000,ko01000	-	-	-	Leu_Phe_trans
DYD3_k127_2126736_0	402881.Plav_3292	1.699e-232	725.0	COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,2U25Z@28211|Alphaproteobacteria,1JN73@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	Biotin carboxylase C-terminal domain	accC	GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
DYD3_k127_2126736_4	391600.ABRU01000025_gene1256	1.752e-37	145.0	COG0511@1|root,COG0511@2|Bacteria,1RCXA@1224|Proteobacteria,2U93Y@28211|Alphaproteobacteria,2KGUG@204458|Caulobacterales	204458|Caulobacterales	I	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA	-	-	-	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742	RC00040,RC00367	ko00000,ko00001,ko00002	-	-	-	Biotin_lipoyl
DYD3_k127_2126736_3	1267005.KB911255_gene2886	1.518e-57	204.0	COG0757@1|root,COG0757@2|Bacteria,1RDDT@1224|Proteobacteria,2U9BV@28211|Alphaproteobacteria,3N6YB@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	E	Catalyzes a trans-dehydration via an enolate intermediate	aroQ	-	4.2.1.10	ko:K03786	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03084	RC00848	ko00000,ko00001,ko00002,ko01000	-	-	-	DHquinase_II
DYD3_k127_2126736_1	1283284.AZUK01000001_gene2197	9.253e-139	462.0	COG0642@1|root,COG5002@1|root,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1Y6MF@135624|Aeromonadales	135624|Aeromonadales	T	His Kinase A (phosphoacceptor) domain	-	-	2.7.13.3	ko:K07679	ko02020,ko05133,map02020,map05133	M00477	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,Hpt,PAS,Response_reg,SBP_bac_3
DYD3_k127_2135574_2	1430440.MGMSRv2_3871	2.83e-89	301.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,2JQ6J@204441|Rhodospirillales	204441|Rhodospirillales	E	COG4166 ABC-type oligopeptide transport system, periplasmic component	-	-	-	ko:K13893	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	SBP_bac_5
DYD3_k127_2135574_3	684719.HIMB114_00012690	1.762e-46	178.0	COG3474@1|root,COG3474@2|Bacteria,1RIDN@1224|Proteobacteria,2U142@28211|Alphaproteobacteria,4BQMP@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Cytochrome c	cycM	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_2135574_0	414684.RC1_3406	4.095e-110	367.0	COG0077@1|root,COG0077@2|Bacteria,1MU60@1224|Proteobacteria,2TSUT@28211|Alphaproteobacteria,2JQJ6@204441|Rhodospirillales	204441|Rhodospirillales	E	Prephenate dehydratase	pheA	-	4.2.1.51	ko:K04518	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024	R00691,R01373	RC00360	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,PDT
DYD3_k127_2135574_1	69395.JQLZ01000004_gene746	5.888e-93	321.0	COG2816@1|root,COG2816@2|Bacteria,1QGCX@1224|Proteobacteria,2TVMG@28211|Alphaproteobacteria,2KG1N@204458|Caulobacterales	204458|Caulobacterales	L	Belongs to the Nudix hydrolase family	-	-	3.6.1.22	ko:K03426	ko00760,ko01100,ko04146,map00760,map01100,map04146	-	R00103,R03004,R11104	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX,NUDIX-like,zf-NADH-PPase
DYD3_k127_2139238_6	1101192.KB910516_gene960	6.704e-26	110.0	COG0125@1|root,COG0125@2|Bacteria,1MV9C@1224|Proteobacteria,2U72D@28211|Alphaproteobacteria,1JS61@119045|Methylobacteriaceae	28211|Alphaproteobacteria	F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis	tmk	GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.4.9	ko:K00943	ko00240,ko01100,map00240,map01100	M00053	R02094,R02098	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylate_kin
DYD3_k127_2139238_3	1316936.K678_04532	4.367e-100	339.0	COG0470@1|root,COG0470@2|Bacteria,1MY1W@1224|Proteobacteria,2TV3E@28211|Alphaproteobacteria,2JR92@204441|Rhodospirillales	204441|Rhodospirillales	L	DNA polymerase III subunit delta	holB	-	2.7.7.7	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2
DYD3_k127_2139238_0	991905.SL003B_2282	1.478e-279	864.0	COG0143@1|root,COG0143@2|Bacteria,1MUBY@1224|Proteobacteria,2TQKA@28211|Alphaproteobacteria,4BP84@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	metG	-	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1g
DYD3_k127_2139238_2	1333998.M2A_3251	3.206e-103	351.0	COG0084@1|root,COG0084@2|Bacteria,1MUC0@1224|Proteobacteria,2TS88@28211|Alphaproteobacteria,4BPRR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	Hydrolase, TatD family	tatD	GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575	-	ko:K03424	-	-	-	-	ko00000,ko01000	-	-	-	TatD_DNase
DYD3_k127_2139238_4	1122137.AQXF01000002_gene235	7.686e-99	341.0	COG1235@1|root,COG1235@2|Bacteria,1MVJH@1224|Proteobacteria,2TQQN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	phnP	-	3.1.4.55	ko:K06167	ko00440,map00440	-	R10205	RC00296	ko00000,ko00001,ko01000	-	-	-	Lactamase_B_2
DYD3_k127_2139238_1	1121033.AUCF01000030_gene150	6.228e-121	410.0	COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,2TRC5@28211|Alphaproteobacteria,2JQYE@204441|Rhodospirillales	204441|Rhodospirillales	P	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	-	-	-	ko:K03455,ko:K11747	-	-	-	-	ko00000,ko02000	2.A.37,2.A.37.1.2	-	-	Na_H_Exchanger,TrkA_N
DYD3_k127_2139238_5	414684.RC1_3660	2.492e-55	209.0	28MIW@1|root,2ZAVI@2|Bacteria,1N523@1224|Proteobacteria,2TSDJ@28211|Alphaproteobacteria,2JS2D@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2149459_7	1122165.AUHS01000011_gene2632	6.1e-30	121.0	COG0596@1|root,COG0596@2|Bacteria,1N3G3@1224|Proteobacteria,1S50R@1236|Gammaproteobacteria,1JGJE@118969|Legionellales	118969|Legionellales	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_2149459_4	1331060.RLDS_11685	2.238e-57	210.0	COG5340@1|root,COG5340@2|Bacteria,1P6MT@1224|Proteobacteria,2U238@28211|Alphaproteobacteria,2KAG8@204457|Sphingomonadales	204457|Sphingomonadales	K	Transcriptional regulator, AbiEi antitoxin	-	-	-	-	-	-	-	-	-	-	-	-	AbiEi_4
DYD3_k127_2149459_0	1442599.JAAN01000014_gene3333	3.101e-143	460.0	COG2253@1|root,COG2253@2|Bacteria,1NJT9@1224|Proteobacteria,1S0YI@1236|Gammaproteobacteria,1X3NZ@135614|Xanthomonadales	135614|Xanthomonadales	S	Nucleotidyl transferase AbiEii toxin, Type IV TA system	-	-	-	-	-	-	-	-	-	-	-	-	AbiEii
DYD3_k127_2149459_5	1121033.AUCF01000015_gene1470	9.633e-52	188.0	COG3760@1|root,COG3760@2|Bacteria,1RDIG@1224|Proteobacteria,2U87T@28211|Alphaproteobacteria,2JSRQ@204441|Rhodospirillales	204441|Rhodospirillales	S	Aminoacyl-tRNA editing domain	-	-	-	ko:K19055	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	tRNA_edit
DYD3_k127_2149459_2	1380394.JADL01000001_gene1997	7.239e-93	315.0	COG3118@1|root,COG3118@2|Bacteria,1MV0R@1224|Proteobacteria,2TS5X@28211|Alphaproteobacteria,2JQCS@204441|Rhodospirillales	204441|Rhodospirillales	O	Thioredoxin	-	-	-	ko:K05838	-	-	-	-	ko00000,ko03110	-	-	-	TPR_19,TPR_20,Thioredoxin
DYD3_k127_2149459_3	1121033.AUCF01000015_gene1468	1.156e-68	239.0	COG2802@1|root,COG2802@2|Bacteria,1NV9N@1224|Proteobacteria,2TQZ4@28211|Alphaproteobacteria,2JS8Z@204441|Rhodospirillales	204441|Rhodospirillales	S	to the N-terminal domain of Lon protease	lonD	-	3.4.21.53	ko:K01338,ko:K07157	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	LON_substr_bdg
DYD3_k127_2149459_8	1207063.P24_03271	1.07e-21	97.0	COG2835@1|root,COG2835@2|Bacteria,1N6Y2@1224|Proteobacteria,2UF4N@28211|Alphaproteobacteria,2JUCC@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the UPF0434 family	-	-	-	ko:K09791	-	-	-	-	ko00000	-	-	-	Trm112p
DYD3_k127_2149459_6	414684.RC1_2501	6.41e-40	151.0	COG3536@1|root,COG3536@2|Bacteria,1MZ5M@1224|Proteobacteria,2U9GJ@28211|Alphaproteobacteria,2JT01@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF971)	-	-	-	-	-	-	-	-	-	-	-	-	DUF971
DYD3_k127_2149459_1	1380394.JADL01000001_gene2002	2.672e-134	441.0	COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,2TRZU@28211|Alphaproteobacteria,2JQFE@204441|Rhodospirillales	204441|Rhodospirillales	CH	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	ubiH	-	-	ko:K03185	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04989,R08773	RC02670	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
DYD3_k127_2167432_8	1121468.AUBR01000006_gene320	2.362e-19	96.0	2CK39@1|root,32SBG@2|Bacteria,1V8KG@1239|Firmicutes,249UQ@186801|Clostridia,42IH0@68295|Thermoanaerobacterales	186801|Clostridia	S	Phage gp6-like head-tail connector protein	-	-	-	-	-	-	-	-	-	-	-	-	Phage_connect_1
DYD3_k127_2167432_2	1207063.P24_17192	1.444e-101	344.0	COG4653@1|root,COG4653@2|Bacteria,1MWU1@1224|Proteobacteria,2TSSY@28211|Alphaproteobacteria,2JVTQ@204441|Rhodospirillales	204441|Rhodospirillales	S	Phage capsid family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_capsid
DYD3_k127_2167432_6	244581.IM40_02975	1.068e-40	158.0	COG3740@1|root,COG3740@2|Bacteria,1N2D8@1224|Proteobacteria,2UD3U@28211|Alphaproteobacteria,47FEU@766|Rickettsiales	766|Rickettsiales	S	Caudovirus prohead serine protease	-	-	-	ko:K06904	-	-	-	-	ko00000	-	-	-	Peptidase_S78
DYD3_k127_2167432_1	78245.Xaut_3150	2.279e-118	392.0	COG4695@1|root,COG4695@2|Bacteria,1MUP5@1224|Proteobacteria,2TT33@28211|Alphaproteobacteria,3EXW6@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	TIGRFAM phage portal protein, HK97 family	gp34	-	-	-	-	-	-	-	-	-	-	-	Phage_portal
DYD3_k127_2167432_0	644966.Tmar_0036	8.055e-160	515.0	COG5323@1|root,COG5323@2|Bacteria	2|Bacteria	M	Terminase RNaseH-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6,Terminase_6C
DYD3_k127_2167432_4	402881.Plav_0479	2.575e-57	214.0	COG2267@1|root,COG2267@2|Bacteria,1N8UK@1224|Proteobacteria,2U35V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_2167432_9	744980.TRICHSKD4_4659	0.0004795	46.0	COG1961@1|root,COG1961@2|Bacteria,1PWCY@1224|Proteobacteria,2TVME@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	COG1961 Site-specific recombinases, DNA invertase Pin homologs	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_2167432_5	744980.TRICHSKD4_1247	2.513e-41	166.0	COG1295@1|root,COG1295@2|Bacteria,1MXQA@1224|Proteobacteria,2TTN5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Ribonuclease, BN	rbn	-	-	ko:K07058	-	-	-	-	ko00000	-	-	-	Virul_fac_BrkB
DYD3_k127_2167432_3	1125973.JNLC01000018_gene2156	3.175e-68	239.0	COG0506@1|root,COG4230@1|root,COG0506@2|Bacteria,COG4230@2|Bacteria,1MV93@1224|Proteobacteria,2TQPT@28211|Alphaproteobacteria,3JRB4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Oxidizes proline to glutamate for use as a carbon and nitrogen source	putA	-	1.2.1.88,1.5.5.2	ko:K13821	ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130	-	R00245,R00707,R00708,R01253,R04444,R04445,R05051	RC00080,RC00083,RC00216,RC00242,RC00255	ko00000,ko00001,ko01000,ko03000	-	-	-	Aldedh,Pro_dh,Pro_dh-DNA_bdg
DYD3_k127_2188547_4	1282876.BAOK01000001_gene1917	1.649e-59	211.0	COG3808@1|root,COG3808@2|Bacteria,1MUQ3@1224|Proteobacteria,2TR9G@28211|Alphaproteobacteria,4BPAG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force	hppA	-	3.6.1.1	ko:K15987	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	3.A.10.1	-	-	H_PPase
DYD3_k127_2188547_5	535289.Dtpsy_0113	1.001e-11	66.0	COG0436@1|root,COG0436@2|Bacteria,1MX6F@1224|Proteobacteria,2VJI9@28216|Betaproteobacteria,4AAZC@80864|Comamonadaceae	28216|Betaproteobacteria	E	aminotransferase class I and II	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
DYD3_k127_2188547_0	438753.AZC_4428	1.398e-170	552.0	COG1073@1|root,COG1073@2|Bacteria,1RA55@1224|Proteobacteria,2U20W@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	polysaccharide biosynthetic process	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6,Hydrolase_4,Polysacc_synt_3,Polysacc_synt_C
DYD3_k127_2188547_2	438753.AZC_4427	1.287e-151	483.0	COG0172@1|root,COG0172@2|Bacteria,1PHJG@1224|Proteobacteria,2TUT6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	seryl-tRNA synthetase	MA20_23120	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2188547_3	438753.AZC_4426	4.105e-146	473.0	COG1960@1|root,COG1960@2|Bacteria,1QV2D@1224|Proteobacteria,2TRHA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	acd2	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_N
DYD3_k127_2188547_6	1458357.BG58_16185	1.445e-11	74.0	COG0236@1|root,COG0236@2|Bacteria,1NB7Q@1224|Proteobacteria,2VWBH@28216|Betaproteobacteria,1K9G2@119060|Burkholderiaceae	28216|Betaproteobacteria	IQ	Acyl carrier protein	-	-	-	-	-	-	-	-	-	-	-	-	PP-binding
DYD3_k127_2188547_1	1268622.AVS7_00355	1.051e-159	512.0	COG0436@1|root,COG0436@2|Bacteria,1MX6F@1224|Proteobacteria,2VJI9@28216|Betaproteobacteria,4AAZC@80864|Comamonadaceae	28216|Betaproteobacteria	E	aminotransferase class I and II	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
DYD3_k127_2190667_3	1366050.N234_30850	1.24e-71	248.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2VI9Y@28216|Betaproteobacteria,1K1EI@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	PFAM fumarylacetoacetate (FAA) hydrolase	-	-	5.3.3.10	ko:K01826	ko00350,ko01120,ko01220,map00350,map01120,map01220	M00533	R04379,R04482	RC01141,RC01162	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF2437,FAA_hydrolase
DYD3_k127_2190667_0	1122132.AQYH01000004_gene1688	4.14e-96	334.0	COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2TRGU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	BQ	Including yeast histone deacetylase and acetoin utilization protein	acuC	-	-	ko:K04768	-	-	-	-	ko00000	-	-	-	Hist_deacetyl
DYD3_k127_2190667_2	1242864.D187_006689	4.118e-73	260.0	COG3380@1|root,COG3380@2|Bacteria,1R5C0@1224|Proteobacteria	1224|Proteobacteria	S	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers	-	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050664,GO:0051287,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363	-	ko:K06955	-	-	-	-	ko00000	-	-	-	Amino_oxidase,NAD_binding_8
DYD3_k127_2190667_1	1101190.ARWB01000001_gene3505	4.705e-94	310.0	COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,2TR3M@28211|Alphaproteobacteria,36X49@31993|Methylocystaceae	28211|Alphaproteobacteria	V	HNH endonuclease	MA20_20605	-	-	-	-	-	-	-	-	-	-	-	HNH,HNH_5
DYD3_k127_2197830_2	1333998.M2A_0166	1.555e-179	571.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,4BTBE@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	CG	PQQ enzyme repeat	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2
DYD3_k127_2197830_1	1121033.AUCF01000010_gene4443	0.0	1225.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,2JPRP@204441|Rhodospirillales	204441|Rhodospirillales	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_2197830_9	1121861.KB899922_gene3112	3.322e-72	258.0	COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,2U2CU@28211|Alphaproteobacteria,2JQW0@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	HlyD_D23
DYD3_k127_2197830_7	414684.RC1_1510	9.254e-80	273.0	28PQS@1|root,2ZCCP@2|Bacteria,1NCXC@1224|Proteobacteria,2U2KV@28211|Alphaproteobacteria,2JWD8@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2197830_6	1238182.C882_3662	4.13e-93	319.0	COG0477@1|root,COG2814@2|Bacteria,1MVZI@1224|Proteobacteria,2U5H1@28211|Alphaproteobacteria,2JRQN@204441|Rhodospirillales	204441|Rhodospirillales	EGP	COG0477 Permeases of the major facilitator superfamily	-	-	-	ko:K05820	-	-	-	-	ko00000,ko02000	2.A.1.27	-	-	MFS_1_like
DYD3_k127_2197830_15	1125863.JAFN01000001_gene2098	9.868e-28	117.0	COG5573@1|root,COG5573@2|Bacteria,1RKHC@1224|Proteobacteria,43AC4@68525|delta/epsilon subdivisions,2X5S0@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_2197830_5	1380386.JIAW01000024_gene6683	3.833e-107	360.0	COG1680@1|root,COG1680@2|Bacteria,2GJJB@201174|Actinobacteria,235DV@1762|Mycobacteriaceae	201174|Actinobacteria	V	beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
DYD3_k127_2197830_10	1380391.JIAS01000013_gene3706	1.79e-70	245.0	COG0231@1|root,COG0231@2|Bacteria,1MW2J@1224|Proteobacteria,2TUWE@28211|Alphaproteobacteria,2JRQU@204441|Rhodospirillales	204441|Rhodospirillales	J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase	efp	-	-	ko:K02356	-	-	-	-	ko00000,ko03012	-	-	-	EFP,EFP_N,Elong-fact-P_C
DYD3_k127_2197830_3	1244869.H261_09909	1.651e-133	434.0	COG2269@1|root,COG2269@2|Bacteria,1MU97@1224|Proteobacteria,2TRD4@28211|Alphaproteobacteria,2JPQD@204441|Rhodospirillales	204441|Rhodospirillales	J	lysyl-tRNA synthetase	poxA	-	-	ko:K04568	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	tRNA-synt_2
DYD3_k127_2197830_11	1234595.C725_0102	1.045e-59	219.0	COG0741@1|root,COG0741@2|Bacteria,1MUMA@1224|Proteobacteria,2TSA5@28211|Alphaproteobacteria,4BS1I@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	transglycosylase	-	-	-	-	-	-	-	-	-	-	-	-	SLT
DYD3_k127_2197830_13	414684.RC1_3105	8.814e-35	143.0	COG3773@1|root,COG3773@2|Bacteria,1RH3D@1224|Proteobacteria,2UAUQ@28211|Alphaproteobacteria,2JT2U@204441|Rhodospirillales	204441|Rhodospirillales	M	Cell Wall Hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_2
DYD3_k127_2197830_14	1417296.U879_13225	1.207e-28	130.0	COG5301@1|root,COG5301@2|Bacteria,1QYZY@1224|Proteobacteria,2TY2R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2793)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2793
DYD3_k127_2197830_0	323098.Nwi_0792	0.0	1493.0	COG3391@1|root,COG3391@2|Bacteria,1MXN7@1224|Proteobacteria,2TR83@28211|Alphaproteobacteria,3JQUY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GTA TIM-barrel-like domain	-	-	-	-	-	-	-	-	-	-	-	-	GTA_TIM,Phage-tail_3
DYD3_k127_2197830_12	391600.ABRU01000040_gene1782	2.171e-56	201.0	COG0791@1|root,COG0791@2|Bacteria,1RK6X@1224|Proteobacteria,2U93K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Phage cell wall peptidase, NlpC P60 family	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60
DYD3_k127_2197830_4	323098.Nwi_0795	1.602e-112	378.0	COG5449@1|root,COG5449@2|Bacteria,1MXK2@1224|Proteobacteria,2TTWS@28211|Alphaproteobacteria,3JV1Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phage conserved hypothetical protein BR0599	-	-	-	-	-	-	-	-	-	-	-	-	DUF2163,Phage_BR0599
DYD3_k127_2197830_8	314256.OG2516_04234	1.365e-75	260.0	COG5448@1|root,COG5448@2|Bacteria,1MXM8@1224|Proteobacteria,2TTJ3@28211|Alphaproteobacteria,2PCTR@252301|Oceanicola	28211|Alphaproteobacteria	S	Conserved hypothetical protein 2217 (DUF2460)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2460
DYD3_k127_2197830_17	1219035.NT2_05_00170	7.691e-12	73.0	COG3941@1|root,COG3941@2|Bacteria,1RH6G@1224|Proteobacteria,2UBH5@28211|Alphaproteobacteria,2KEBQ@204457|Sphingomonadales	204457|Sphingomonadales	S	tape measure	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2237954_2	1379270.AUXF01000001_gene2072	5.422e-141	468.0	COG0666@1|root,COG0666@2|Bacteria,1ZV4D@142182|Gemmatimonadetes	142182|Gemmatimonadetes	S	Ankyrin repeats (many copies)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2237954_1	402881.Plav_3325	9.547e-146	478.0	COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2TR1W@28211|Alphaproteobacteria,1JNCJ@119043|Rhodobiaceae	28211|Alphaproteobacteria	FP	Ppx/GppA phosphatase family	ppx	-	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230	-	R03409	RC00002	ko00000,ko00001,ko01000	-	-	-	Ppx-GppA
DYD3_k127_2237954_0	1150626.PHAMO_570088	0.0	1015.0	COG0855@1|root,COG0855@2|Bacteria,1MUM3@1224|Proteobacteria,2TRBP@28211|Alphaproteobacteria,2JQAT@204441|Rhodospirillales	204441|Rhodospirillales	P	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)	ppk	-	2.7.4.1	ko:K00937	ko00190,ko03018,map00190,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	PP_kinase,PP_kinase_C,PP_kinase_N
DYD3_k127_2237954_4	1211115.ALIQ01000116_gene4660	6.703e-53	199.0	COG0593@1|root,COG0593@2|Bacteria,1N4PG@1224|Proteobacteria,2U96K@28211|Alphaproteobacteria,3NAZB@45404|Beijerinckiaceae	28211|Alphaproteobacteria	L	Belongs to the DnaA family	hda	-	-	-	-	-	-	-	-	-	-	-	Bac_DnaA
DYD3_k127_2237954_3	411684.HPDFL43_05390	2.46e-73	253.0	COG0628@1|root,COG0628@2|Bacteria,1MW0B@1224|Proteobacteria,2TRD3@28211|Alphaproteobacteria,43J0E@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	AI-2E family transporter	perM	-	-	ko:K03548	-	-	-	-	ko00000,ko02000	2.A.86.1	-	-	AI-2E_transport
DYD3_k127_2246735_2	1294273.roselon_01233	2.004e-104	343.0	COG0066@1|root,COG0066@2|Bacteria,1MVXB@1224|Proteobacteria,2TRRS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	leuD	-	4.2.1.33,4.2.1.35	ko:K01704	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R10170	RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase_C
DYD3_k127_2246735_0	1380391.JIAS01000002_gene3226	4.352e-246	765.0	COG0065@1|root,COG0065@2|Bacteria,1MVYR@1224|Proteobacteria,2TR6K@28211|Alphaproteobacteria,2JQ8V@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	leuC	-	4.2.1.33,4.2.1.35	ko:K01703	ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170	RC00497,RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase
DYD3_k127_2246735_4	1122135.KB893157_gene191	9.877e-51	184.0	COG0335@1|root,COG0335@2|Bacteria,1RH3A@1224|Proteobacteria,2U9DF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	rplS	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02884	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L19
DYD3_k127_2246735_3	1333998.M2A_0768	9.124e-99	333.0	COG0336@1|root,COG0336@2|Bacteria,1MUN1@1224|Proteobacteria,2TSIZ@28211|Alphaproteobacteria,4BPYG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Belongs to the RNA methyltransferase TrmD family	trmD	GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.228	ko:K00554	-	-	R00597	RC00003,RC00334	ko00000,ko01000,ko03016	-	-	-	tRNA_m1G_MT
DYD3_k127_2246735_6	1207063.P24_06611	6.4e-47	175.0	COG0806@1|root,COG0806@2|Bacteria,1MWQR@1224|Proteobacteria,2U9UT@28211|Alphaproteobacteria,2JT00@204441|Rhodospirillales	204441|Rhodospirillales	J	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes	rimM	-	-	ko:K02860	-	-	-	-	ko00000,ko03009	-	-	-	PRC,RimM
DYD3_k127_2246735_7	178901.AmDm5_1135	1.214e-43	162.0	COG0228@1|root,COG0228@2|Bacteria,1MZCT@1224|Proteobacteria,2U94X@28211|Alphaproteobacteria,2JSRB@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the bacterial ribosomal protein bS16 family	rpsP	-	-	ko:K02959	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S16
DYD3_k127_2246735_1	395963.Bind_3351	7.726e-183	583.0	COG0541@1|root,COG0541@2|Bacteria,1MVIA@1224|Proteobacteria,2TQSW@28211|Alphaproteobacteria,3NA1Z@45404|Beijerinckiaceae	28211|Alphaproteobacteria	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	ffh	-	3.6.5.4	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko01000,ko02044	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9	-	-	SRP54,SRP54_N,SRP_SPB
DYD3_k127_2246735_5	1510531.JQJJ01000009_gene905	5.853e-48	190.0	2DCV2@1|root,2ZFFG@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2246735_9	1430440.MGMSRv2_1665	1.217e-15	85.0	COG3861@1|root,COG3861@2|Bacteria,1NFZG@1224|Proteobacteria,2VGEM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
DYD3_k127_2246735_8	1353528.DT23_09765	3.287e-22	98.0	COG3237@1|root,COG3237@2|Bacteria,1N6X4@1224|Proteobacteria,2UF5Q@28211|Alphaproteobacteria,2XNQC@285107|Thioclava	28211|Alphaproteobacteria	S	Belongs to the UPF0337 (CsbD) family	-	-	-	-	-	-	-	-	-	-	-	-	CsbD
DYD3_k127_2246735_10	1038860.AXAP01000053_gene7258	1.388e-10	65.0	COG0457@1|root,COG0457@2|Bacteria,1N01S@1224|Proteobacteria,2TSR4@28211|Alphaproteobacteria,3JTG9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2252341_4	639283.Snov_4065	3.238e-116	397.0	COG0687@1|root,COG0687@2|Bacteria,1PRWU@1224|Proteobacteria,2U2MI@28211|Alphaproteobacteria,3EYWY@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Required for the activity of the bacterial periplasmic transport system of putrescine	potD	-	-	ko:K11069	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	SBP_bac_6,SBP_bac_8
DYD3_k127_2252341_2	1121033.AUCF01000024_gene218	3.337e-126	412.0	COG2334@1|root,COG2334@2|Bacteria,1PGM7@1224|Proteobacteria,2TTGY@28211|Alphaproteobacteria,2JPQE@204441|Rhodospirillales	204441|Rhodospirillales	S	Phosphotransferase enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	APH
DYD3_k127_2252341_3	1121033.AUCF01000024_gene219	7.068e-122	395.0	COG1028@1|root,COG1028@2|Bacteria,1MWCY@1224|Proteobacteria,2TT44@28211|Alphaproteobacteria,2JP9J@204441|Rhodospirillales	204441|Rhodospirillales	IQ	KR domain	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_2252341_1	1089552.KI911559_gene2056	1.141e-128	421.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,2JQTG@204441|Rhodospirillales	204441|Rhodospirillales	E	TOBE domain	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran,TOBE_2
DYD3_k127_2252341_7	1123020.AUIE01000025_gene4758	2.704e-111	372.0	COG1176@1|root,COG1176@2|Bacteria,1MVGM@1224|Proteobacteria,1RNNZ@1236|Gammaproteobacteria,1YESP@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K11071	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_2252341_8	1177928.TH2_04798	6.922e-103	340.0	COG1177@1|root,COG1177@2|Bacteria,1MVC5@1224|Proteobacteria,2TRRJ@28211|Alphaproteobacteria,2JS0G@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1
DYD3_k127_2252341_6	1177928.TH2_04803	5.493e-114	389.0	COG0687@1|root,COG0687@2|Bacteria,1MUYW@1224|Proteobacteria,2TSUZ@28211|Alphaproteobacteria,2JRCC@204441|Rhodospirillales	204441|Rhodospirillales	E	Bacterial extracellular solute-binding protein	-	-	-	ko:K11069	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	SBP_bac_8
DYD3_k127_2252341_9	331869.BAL199_09800	1.187e-83	287.0	COG0388@1|root,COG0388@2|Bacteria,1MX4I@1224|Proteobacteria,2TVMQ@28211|Alphaproteobacteria,4BQ62@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	CN_hydrolase
DYD3_k127_2252341_0	1294143.H681_23630	7.808e-138	447.0	COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,1RPCH@1236|Gammaproteobacteria	1236|Gammaproteobacteria	BQ	COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein	-	-	-	-	-	-	-	-	-	-	-	-	Hist_deacetyl
DYD3_k127_2252341_5	1333998.M2A_0542	8.171e-115	383.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,2U2TN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_2253696_0	1125973.JNLC01000014_gene2382	0.0	1007.0	COG0129@1|root,COG0129@2|Bacteria,1MV4I@1224|Proteobacteria,2TQRW@28211|Alphaproteobacteria,3JVG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	Belongs to the IlvD Edd family	MA20_27195	-	4.2.1.82,4.2.1.9	ko:K01687,ko:K22186	ko00040,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00040,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R02429,R04441,R05070	RC00468,RC00543,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
DYD3_k127_2253696_2	639283.Snov_0116	1.795e-153	504.0	COG2017@1|root,COG2017@2|Bacteria,1MVMN@1224|Proteobacteria,2TTJ7@28211|Alphaproteobacteria,3EYR4@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Aldose 1-epimerase	-	-	5.1.3.3	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	M00632	R01602,R10619	RC00563	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldose_epim
DYD3_k127_2253696_3	639283.Snov_0117	2.963e-146	474.0	COG0673@1|root,COG0673@2|Bacteria,1MW0Q@1224|Proteobacteria,2TQR0@28211|Alphaproteobacteria,3F0RH@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	-	-	1.1.1.48	ko:K00035	ko00052,ko01100,map00052,map01100	-	R01094,R01097	RC00161	ko00000,ko00001,ko01000	-	-	-	GFO_IDH_MocA
DYD3_k127_2253696_1	1168059.KB899087_gene1027	1.985e-212	668.0	COG1012@1|root,COG1012@2|Bacteria,1MY2V@1224|Proteobacteria,2TTPR@28211|Alphaproteobacteria,3F17N@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	-	-	1.2.1.26	ko:K13877	ko00040,ko00053,map00040,map00053	-	R00264	RC00080	ko00000,ko00001,ko01000	-	-	-	Aldedh
DYD3_k127_2258753_10	1230343.CANP01000008_gene852	1.556e-08	55.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,1RN7B@1236|Gammaproteobacteria,1JGHU@118969|Legionellales	118969|Legionellales	L	COG2826 Transposase and inactivated derivatives, IS30 family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
DYD3_k127_2258753_2	402881.Plav_3247	3.855e-158	509.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,1JP8Y@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	1.5.8.1,1.5.8.2	ko:K00317	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R01588,R02511	RC00185,RC00556,RC00557,RC00732	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN,Pyr_redox_2
DYD3_k127_2258753_5	1110502.TMO_0222	5.097e-122	403.0	COG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2TRJ1@28211|Alphaproteobacteria,2JR2M@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Sugar (and other) transporter	-	-	-	ko:K07552	-	-	-	-	ko00000,ko02000	2.A.1.2	-	-	MFS_1
DYD3_k127_2258753_0	663610.JQKO01000016_gene1570	0.0	1629.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3N9SJ@45404|Beijerinckiaceae	28211|Alphaproteobacteria	V	AcrB/AcrD/AcrF family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_2258753_4	663610.JQKO01000016_gene1569	1.431e-142	460.0	COG0845@1|root,COG0845@2|Bacteria,1NJDF@1224|Proteobacteria,2TSZA@28211|Alphaproteobacteria,3NAT7@45404|Beijerinckiaceae	28211|Alphaproteobacteria	M	HlyD family secretion protein	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_2258753_7	1301098.PKB_2382	1.603e-61	222.0	COG1028@1|root,COG1028@2|Bacteria,1MWGC@1224|Proteobacteria,1S1FQ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	1.1.1.159,1.1.1.206	ko:K00076,ko:K08081	ko00121,ko00960,ko01100,ko01110,map00121,map00960,map01100,map01110	-	R02832	RC00144	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
DYD3_k127_2258753_1	1041147.AUFB01000004_gene4893	5.42e-179	568.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,4BAUR@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	atoB	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_2258753_8	1005048.CFU_1076	3.562e-54	200.0	COG1073@1|root,COG1073@2|Bacteria,1MZUA@1224|Proteobacteria,2VNP3@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_4,Hydrolase_4
DYD3_k127_2258753_3	1380394.JADL01000010_gene4309	1.212e-157	511.0	COG0477@1|root,COG2814@2|Bacteria,1MUDA@1224|Proteobacteria,2TS0P@28211|Alphaproteobacteria,2JQZR@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_2258753_9	1030157.AFMP01000016_gene2454	7.862e-50	179.0	COG1741@1|root,COG1741@2|Bacteria,1MVSW@1224|Proteobacteria,2TSR6@28211|Alphaproteobacteria,2K0PN@204457|Sphingomonadales	204457|Sphingomonadales	S	Belongs to the pirin family	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin
DYD3_k127_2258753_6	685035.ADAE01000002_gene2557	4.496e-64	221.0	COG1741@1|root,COG1741@2|Bacteria,1MVSW@1224|Proteobacteria,2TSR6@28211|Alphaproteobacteria,2K0PN@204457|Sphingomonadales	204457|Sphingomonadales	S	Belongs to the pirin family	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin
DYD3_k127_2269658_3	1121033.AUCF01000013_gene1536	3.186e-48	181.0	COG3821@1|root,COG3821@2|Bacteria,1RDXR@1224|Proteobacteria,2TTTD@28211|Alphaproteobacteria,2JSCE@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function, DUF599	-	-	-	-	-	-	-	-	-	-	-	-	DUF599
DYD3_k127_2269658_0	1110502.TMO_0440	1.014e-154	501.0	COG0635@1|root,COG0635@2|Bacteria,1MV1I@1224|Proteobacteria,2TRKT@28211|Alphaproteobacteria,2JQTN@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the anaerobic coproporphyrinogen-III oxidase family	hemN	-	-	-	-	-	-	-	-	-	-	-	HemN_C,Radical_SAM
DYD3_k127_2269658_1	69395.JQLZ01000002_gene1330	1.243e-100	332.0	COG2378@1|root,COG2378@2|Bacteria,1MXS8@1224|Proteobacteria,2TT5H@28211|Alphaproteobacteria,2KGF0@204458|Caulobacterales	204458|Caulobacterales	K	WYL domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_11,WYL
DYD3_k127_2269658_2	1197906.CAJQ02000053_gene4259	1.025e-91	308.0	COG0625@1|root,COG0625@2|Bacteria,1MX33@1224|Proteobacteria,2TV9R@28211|Alphaproteobacteria,3JRRN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Outer mitochondrial membrane transport complex protein	MA20_18730	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_C_6,GST_N_4
DYD3_k127_2295847_6	1353531.AZNX01000001_gene1711	3.215e-94	313.0	COG0625@1|root,COG0625@2|Bacteria,1MWUG@1224|Proteobacteria,2TTZ6@28211|Alphaproteobacteria,4B7MR@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	gstB	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_3,GST_N
DYD3_k127_2295847_0	1333998.M2A_1940	8.076e-254	815.0	COG4581@1|root,COG4581@2|Bacteria,1MVD6@1224|Proteobacteria,2TR7N@28211|Alphaproteobacteria,4BPHU@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	PFAM Helicase conserved C-terminal domain	mgpS	-	3.6.4.13	ko:K17675	-	-	-	-	ko00000,ko01000,ko03029	-	-	-	Helicase_C
DYD3_k127_2295847_13	89187.ISM_00025	1.792e-25	109.0	COG1188@1|root,COG1188@2|Bacteria,1MZR6@1224|Proteobacteria,2UBS3@28211|Alphaproteobacteria,46QXD@74030|Roseovarius	28211|Alphaproteobacteria	J	COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	hslR	-	-	ko:K04762	-	-	-	-	ko00000,ko03110	-	-	-	S4
DYD3_k127_2295847_2	316058.RPB_1270	1.473e-182	585.0	COG0277@1|root,COG0277@2|Bacteria,1MXTV@1224|Proteobacteria,2U0T4@28211|Alphaproteobacteria,3JRE4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	PFAM FAD linked oxidase domain protein	-	-	2.5.1.26	ko:K00803	ko00565,ko01100,ko04146,map00565,map01100,map04146	-	R04311	RC00020,RC02886	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_2295847_4	1550073.JROH01000050_gene3038	4.629e-134	434.0	COG0825@1|root,COG0825@2|Bacteria,1MURN@1224|Proteobacteria,2TR6V@28211|Alphaproteobacteria,2K0BW@204457|Sphingomonadales	204457|Sphingomonadales	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	accA	-	2.1.3.15,6.4.1.2	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	ACCA
DYD3_k127_2295847_3	1380391.JIAS01000014_gene2143	2.54e-162	516.0	COG2301@1|root,COG2301@2|Bacteria,1MW0A@1224|Proteobacteria,2TU4H@28211|Alphaproteobacteria,2JRHB@204441|Rhodospirillales	204441|Rhodospirillales	G	Belongs to the HpcH HpaI aldolase family	-	-	4.1.3.24,4.1.3.25	ko:K08691	ko00630,ko00660,ko00680,ko00720,ko01120,ko01200,map00630,map00660,map00680,map00720,map01120,map01200	M00346,M00373,M00376	R00237,R00473,R00934	RC00307,RC00308,RC00311,RC00407,RC00502,RC01205	ko00000,ko00001,ko00002,ko01000	-	-	-	HpcH_HpaI
DYD3_k127_2295847_7	631454.N177_2550	4.619e-94	334.0	COG4974@1|root,COG4974@2|Bacteria,1MVNF@1224|Proteobacteria,2TRAA@28211|Alphaproteobacteria,1JN4T@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	Phage integrase, N-terminal SAM-like domain	xerD	-	-	ko:K04763	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD3_k127_2295847_16	1150626.PHAMO_510070	5.575e-10	69.0	2BWFC@1|root,33R2I@2|Bacteria,1PW0I@1224|Proteobacteria,2V77M@28211|Alphaproteobacteria,2JSEJ@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2295847_15	1316936.K678_03584	2.851e-10	72.0	2BWFC@1|root,33R2I@2|Bacteria,1PW0I@1224|Proteobacteria,2V77M@28211|Alphaproteobacteria,2JSEJ@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2295847_20	1244869.H261_17036	0.0001754	45.0	2DRIP@1|root,33BYP@2|Bacteria,1NHFQ@1224|Proteobacteria,2UK8U@28211|Alphaproteobacteria,2JUKJ@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2295847_8	1121033.AUCF01000005_gene5367	1.966e-64	229.0	COG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,2U76C@28211|Alphaproteobacteria,2JS5E@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate	aroK	-	2.7.1.71	ko:K00891	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	SKI
DYD3_k127_2295847_5	402881.Plav_1717	4.135e-131	439.0	COG0337@1|root,COG0337@2|Bacteria,1MUBK@1224|Proteobacteria,2TRDA@28211|Alphaproteobacteria,1JN2I@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)	aroB	-	2.7.1.71,4.2.3.4	ko:K01735,ko:K13829	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412,R03083	RC00002,RC00078,RC00847	ko00000,ko00001,ko00002,ko01000	-	-	-	DHQ_synthase,SKI
DYD3_k127_2295847_9	715226.ABI_10590	2.923e-50	203.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,2KGV8@204458|Caulobacterales	204458|Caulobacterales	Q	Hemolysin-type calcium-binding repeat 2 copies family protein	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_16,HemolysinCabind
DYD3_k127_2295847_14	1122135.KB893157_gene433	6.677e-12	68.0	COG4321@1|root,COG4321@2|Bacteria,1N6V0@1224|Proteobacteria,2UFNN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Ribbon-helix-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	RHH_4
DYD3_k127_2295847_12	1502851.FG93_02282	1.58e-25	108.0	COG0271@1|root,COG0271@2|Bacteria,1MZG5@1224|Proteobacteria,2UF6U@28211|Alphaproteobacteria,3K0BM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Belongs to the BolA IbaG family	bolA	GO:0006807,GO:0008150,GO:0008152,GO:0010467,GO:0019538,GO:0043170,GO:0044238,GO:0051604,GO:0071704,GO:0097428,GO:0106035,GO:1901564	-	ko:K05527,ko:K22066	-	-	-	-	ko00000,ko03000,ko03029	-	-	-	BolA
DYD3_k127_2295847_10	331869.BAL199_18173	9.512e-39	152.0	COG0484@1|root,COG0484@2|Bacteria,1QU4R@1224|Proteobacteria,2TVZG@28211|Alphaproteobacteria,4BQSR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	DnaJ molecular chaperone homology domain	dnaJ2	-	-	-	-	-	-	-	-	-	-	-	DnaJ
DYD3_k127_2295847_1	258594.RPA0498	1.292e-184	580.0	COG0714@1|root,COG0714@2|Bacteria,1MXIW@1224|Proteobacteria,2TS1Z@28211|Alphaproteobacteria,3JS1D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobaltochelatase CobS subunit N terminal	cobS	-	6.6.1.2	ko:K09882	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	AAA_5,CbbQ_C,CobS_N
DYD3_k127_2295847_11	1380355.JNIJ01000032_gene3404	7.1e-33	129.0	COG4547@1|root,COG4547@2|Bacteria,1MX11@1224|Proteobacteria,2TS4N@28211|Alphaproteobacteria,3JRPW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Cobalamin biosynthesis protein CobT VWA domain	cobT	-	6.6.1.2	ko:K09883	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobT,CobT_C
DYD3_k127_2304605_7	1380394.JADL01000001_gene2131	3.47e-14	75.0	28RSH@1|root,2ZE4X@2|Bacteria,1P7EV@1224|Proteobacteria,2UWD5@28211|Alphaproteobacteria,2JY1W@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2304605_4	1419583.V466_22575	6.147e-84	281.0	COG2930@1|root,COG2930@2|Bacteria,1RAIB@1224|Proteobacteria,1S5B7@1236|Gammaproteobacteria,1YS5F@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	S	Twin-arginine translocation pathway signal protein	-	-	-	-	-	-	-	-	-	-	-	-	Ysc84
DYD3_k127_2304605_1	1122604.JONR01000006_gene2635	1.043e-108	368.0	COG0596@1|root,COG0596@2|Bacteria,1QIT9@1224|Proteobacteria,1RNP9@1236|Gammaproteobacteria,1X5DS@135614|Xanthomonadales	135614|Xanthomonadales	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_2304605_2	1458357.BG58_22110	5.018e-93	312.0	COG1024@1|root,COG1024@2|Bacteria,1MWF6@1224|Proteobacteria,2VJSH@28216|Betaproteobacteria,1K3R5@119060|Burkholderiaceae	28216|Betaproteobacteria	I	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA	echA8_4	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_2304605_3	1105367.CG50_06430	7.114e-88	304.0	COG4222@1|root,COG4222@2|Bacteria,1MVDD@1224|Proteobacteria,2VFA2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Esterase-like activity of phytase	-	-	-	-	-	-	-	-	-	-	-	-	Phytase-like
DYD3_k127_2304605_6	1380394.JADL01000004_gene6055	5.078e-81	281.0	COG0600@1|root,COG0600@2|Bacteria,1MVAE@1224|Proteobacteria,2TSP5@28211|Alphaproteobacteria,2JVAQ@204441|Rhodospirillales	204441|Rhodospirillales	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_2304605_5	1192868.CAIU01000008_gene882	1.528e-82	280.0	COG1116@1|root,COG1116@2|Bacteria,1MUIM@1224|Proteobacteria,2TRHM@28211|Alphaproteobacteria,43IYF@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	ABC-type nitrate sulfonate bicarbonate transport system ATPase component	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_2304605_0	1089551.KE386572_gene2967	1.208e-125	411.0	COG0715@1|root,COG0715@2|Bacteria,1MXA3@1224|Proteobacteria,2TTW8@28211|Alphaproteobacteria,4BPUD@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	NMT1/THI5 like	MA20_40330	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
DYD3_k127_2306089_3	1123020.AUIE01000010_gene1158	1.79e-78	268.0	COG1309@1|root,COG1309@2|Bacteria,1REZF@1224|Proteobacteria,1S7QF@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	BetI-type transcriptional repressor, C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_6,TetR_N
DYD3_k127_2306089_2	1123020.AUIE01000010_gene1155	4.203e-154	490.0	COG5285@1|root,COG5285@2|Bacteria,1PF68@1224|Proteobacteria	1224|Proteobacteria	Q	Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_2306089_5	1123020.AUIE01000010_gene1156	1.777e-63	220.0	COG0251@1|root,COG0251@2|Bacteria,1RCX5@1224|Proteobacteria,1SUXJ@1236|Gammaproteobacteria,1YKJ8@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	J	Endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_2306089_1	470.IX87_20120	1.192e-196	625.0	COG0665@1|root,COG0665@2|Bacteria,1Q38Q@1224|Proteobacteria,1SKCV@1236|Gammaproteobacteria,3NSNV@468|Moraxellaceae	1236|Gammaproteobacteria	E	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_2306089_6	436717.AOLE_09505	4.081e-55	203.0	2CGV4@1|root,32RW8@2|Bacteria,1NY5U@1224|Proteobacteria,1SQ9T@1236|Gammaproteobacteria,3NMTT@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2306089_4	1294143.H681_19695	1.653e-68	239.0	COG2863@1|root,COG2863@2|Bacteria,1REHS@1224|Proteobacteria	1224|Proteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C,Cytochrome_CBB3
DYD3_k127_2306089_0	381666.H16_A0831	1.209e-210	661.0	COG1231@1|root,COG1231@2|Bacteria,1P3D9@1224|Proteobacteria,2VNRA@28216|Betaproteobacteria,1K0XW@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Flavin containing amine oxidoreductase	-	-	1.4.3.4	ko:K00274	ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034	M00135	R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354	RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
DYD3_k127_2309445_5	582899.Hden_1287	1.781e-15	79.0	28UZA@1|root,2ZUTI@2|Bacteria,1P56A@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2309445_0	83406.HDN1F_33540	4.198e-151	488.0	COG4399@1|root,COG4399@2|Bacteria,1R42C@1224|Proteobacteria,1RPWG@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2309445_1	1380394.JADL01000009_gene3179	1.074e-123	413.0	COG0154@1|root,COG0154@2|Bacteria,1MWWQ@1224|Proteobacteria,2TSN9@28211|Alphaproteobacteria,2JRCA@204441|Rhodospirillales	204441|Rhodospirillales	J	Amidase	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
DYD3_k127_2309445_4	1205680.CAKO01000002_gene2195	6.624e-48	177.0	COG3153@1|root,COG3153@2|Bacteria,1RD0C@1224|Proteobacteria,2U7AS@28211|Alphaproteobacteria,2JTNC@204441|Rhodospirillales	204441|Rhodospirillales	S	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_7,Acetyltransf_9
DYD3_k127_2309445_3	1028800.RG540_PA11640	2.924e-90	327.0	COG3829@1|root,COG5001@1|root,COG3829@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TZ1M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,PAS_3
DYD3_k127_2309445_2	1082933.MEA186_34214	8.078e-97	327.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,43IN1@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	-	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_2324932_12	158500.BV97_03820	3.426e-40	163.0	COG4965@1|root,COG4965@2|Bacteria,1R8U4@1224|Proteobacteria,2TS3E@28211|Alphaproteobacteria,2K1UB@204457|Sphingomonadales	204457|Sphingomonadales	U	type II secretion system protein	-	-	-	ko:K12510	-	-	-	-	ko00000,ko02044	-	-	-	T2SSF
DYD3_k127_2324932_1	1144305.PMI02_05496	8.579e-145	482.0	COG4962@1|root,COG4962@2|Bacteria,1R7EN@1224|Proteobacteria,2U4V8@28211|Alphaproteobacteria,2K3T0@204457|Sphingomonadales	204457|Sphingomonadales	U	Type II/IV secretion system protein	-	-	-	ko:K02283	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	T2SSE
DYD3_k127_2324932_16	1283300.ATXB01000001_gene673	6.587e-20	103.0	COG4963@1|root,COG4963@2|Bacteria,1R5SM@1224|Proteobacteria,1RRFI@1236|Gammaproteobacteria	1236|Gammaproteobacteria	U	COG4963 Flp pilus assembly protein, ATPase CpaE	tadZ	-	-	ko:K02282	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	TadZ_N
DYD3_k127_2324932_4	402881.Plav_0070	9.747e-102	350.0	COG4964@1|root,COG4964@2|Bacteria,1MV8G@1224|Proteobacteria,2TRNN@28211|Alphaproteobacteria,1JNJW@119043|Rhodobiaceae	28211|Alphaproteobacteria	U	Bacterial type II and III secretion system protein	rhcC2	-	-	ko:K02280	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	BON,Secretin,T2SS-T3SS_pil_N
DYD3_k127_2324932_15	402881.Plav_0069	3.399e-33	140.0	COG3745@1|root,COG3745@2|Bacteria,1Q19N@1224|Proteobacteria,2UFVQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	Flp pilus assembly protein RcpC/CpaB	-	-	-	ko:K02279	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	RcpC,SAF
DYD3_k127_2324932_13	398578.Daci_2082	6.933e-39	164.0	COG3266@1|root,COG5295@1|root,COG3266@2|Bacteria,COG5295@2|Bacteria	2|Bacteria	UW	Hep Hag repeat protein	tonB5	-	2.7.11.1	ko:K03466,ko:K08884,ko:K21449	-	-	-	-	ko00000,ko01000,ko01001,ko02000,ko03036	1.B.40.2,3.A.12	-	-	Collagen,YadA_stalk
DYD3_k127_2324932_17	391937.NA2_12059	1.006e-13	84.0	2E41G@1|root,32YY3@2|Bacteria,1N7AU@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2324932_18	1235457.C404_00070	3.436e-06	55.0	COG2197@1|root,COG2197@2|Bacteria,1R9ZF@1224|Proteobacteria,2VUG4@28216|Betaproteobacteria,1K7MW@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_2324932_2	331869.BAL199_16573	3.906e-121	393.0	COG4598@1|root,COG4598@2|Bacteria,1QTS2@1224|Proteobacteria,2TVZC@28211|Alphaproteobacteria,4BQ09@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	AAA domain, putative AbiEii toxin, Type IV TA system	-	-	3.6.3.21	ko:K02028,ko:K10025	ko02010,map02010	M00235,M00236	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.11	-	-	ABC_tran
DYD3_k127_2324932_9	1168059.KB899087_gene2050	3.421e-63	230.0	COG4215@1|root,COG4215@2|Bacteria,1PGH0@1224|Proteobacteria,2V8BF@28211|Alphaproteobacteria,3F0AU@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02029	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	BPD_transp_1
DYD3_k127_2324932_8	1211115.ALIQ01000026_gene698	4.457e-69	246.0	COG4160@1|root,COG4160@2|Bacteria,1QV6B@1224|Proteobacteria,2U1EA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	amino acid ABC transporter	nocM	-	-	ko:K02029	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	BPD_transp_1
DYD3_k127_2324932_5	414684.RC1_2414	1.699e-98	340.0	COG3025@1|root,COG5607@1|root,COG3025@2|Bacteria,COG5607@2|Bacteria,1MY43@1224|Proteobacteria,2TQRV@28211|Alphaproteobacteria,2JQ4S@204441|Rhodospirillales	204441|Rhodospirillales	S	CYTH	-	-	-	-	-	-	-	-	-	-	-	-	CHAD,CYTH
DYD3_k127_2324932_11	670307.HYPDE_31423	8.25e-41	158.0	COG2062@1|root,COG2062@2|Bacteria,1N0FX@1224|Proteobacteria,2UBYD@28211|Alphaproteobacteria,3N8XI@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	T	phosphohistidine phosphatase, SixA	sixA	-	-	ko:K08296	-	-	-	-	ko00000,ko01000	-	-	-	His_Phos_1
DYD3_k127_2324932_3	1173263.Syn7502_01226	6.165e-114	369.0	COG0450@1|root,COG0450@2|Bacteria,1G0GZ@1117|Cyanobacteria,1GZ8Z@1129|Synechococcus	1117|Cyanobacteria	O	Peroxiredoxin	hflX	-	-	ko:K03665	-	-	-	-	ko00000,ko03009	-	-	-	1-cysPrx_C,AhpC-TSA
DYD3_k127_2324932_14	991905.SL003B_3258	2.921e-35	138.0	COG3793@1|root,COG3793@2|Bacteria,1RD1X@1224|Proteobacteria,2U788@28211|Alphaproteobacteria,4BSC9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	Tellurite resistance protein TerB	-	-	-	-	-	-	-	-	-	-	-	-	TerB
DYD3_k127_2324932_10	439235.Dalk_2333	1.36e-44	169.0	COG1309@1|root,COG1309@2|Bacteria,1N11B@1224|Proteobacteria,42ZYG@68525|delta/epsilon subdivisions,2WVGK@28221|Deltaproteobacteria	28221|Deltaproteobacteria	K	regulatory protein TetR	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2324932_6	570967.JMLV01000007_gene964	4.62e-75	266.0	COG0778@1|root,COG0778@2|Bacteria,1NTK9@1224|Proteobacteria,2TR3E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Nitroreductase	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
DYD3_k127_2324932_0	1238182.C882_1140	3.234e-306	965.0	COG1199@1|root,COG1199@2|Bacteria,1MVCU@1224|Proteobacteria,2TUKS@28211|Alphaproteobacteria,2JPAC@204441|Rhodospirillales	204441|Rhodospirillales	KL	HELICc2	-	-	3.6.4.12	ko:K03722	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	Helicase_C_2
DYD3_k127_2324932_7	1110502.TMO_0439	3.984e-74	255.0	COG3047@1|root,COG3047@2|Bacteria,1NUZJ@1224|Proteobacteria,2TRGI@28211|Alphaproteobacteria,2JZRZ@204441|Rhodospirillales	204441|Rhodospirillales	M	OmpW family	-	-	-	ko:K07275	-	-	-	-	ko00000	-	-	-	OmpW
DYD3_k127_2327367_3	1333998.M2A_0623	5.565e-31	125.0	COG2084@1|root,COG2084@2|Bacteria,1RA7F@1224|Proteobacteria,2UVAZ@28211|Alphaproteobacteria,4BPRX@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	mmsB	-	1.1.1.31	ko:K00020	ko00280,ko01100,map00280,map01100	-	R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
DYD3_k127_2327367_1	1333998.M2A_0624	2.944e-125	411.0	COG1024@1|root,COG1024@2|Bacteria,1MU0B@1224|Proteobacteria,2TQW3@28211|Alphaproteobacteria,4BPY9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	hibch	-	3.1.2.4,4.2.1.17	ko:K01692,ko:K05605	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01200,map01212	M00013,M00032,M00087	R03026,R03045,R03158,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05064,R05595,R06411,R06412,R06942,R08093	RC00004,RC00014,RC00137,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_2
DYD3_k127_2327367_0	1121033.AUCF01000032_gene2651	1.198e-184	583.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,2JPPM@204441|Rhodospirillales	204441|Rhodospirillales	I	COG1960 Acyl-CoA dehydrogenases	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_2327367_2	521674.Plim_1546	2.024e-97	332.0	COG0113@1|root,COG0113@2|Bacteria,2IWU8@203682|Planctomycetes	203682|Planctomycetes	H	Belongs to the ALAD family	-	-	4.2.1.24	ko:K01698	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00036	RC00918,RC01781	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ALAD
DYD3_k127_2327367_4	3641.EOY07286	2.083e-20	97.0	COG3104@1|root,KOG1237@2759|Eukaryota,37IEX@33090|Viridiplantae,3G7JK@35493|Streptophyta	35493|Streptophyta	E	Protein NRT1 PTR FAMILY	-	-	-	ko:K14638	-	-	-	-	ko00000,ko02000	2.A.17.3	-	-	PTR2
DYD3_k127_2344582_1	1380394.JADL01000012_gene839	2.613e-145	474.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2TSNH@28211|Alphaproteobacteria,2JRN8@204441|Rhodospirillales	204441|Rhodospirillales	K	Belongs to the sigma-70 factor family	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2
DYD3_k127_2344582_5	1380394.JADL01000012_gene838	6.803e-47	172.0	COG3795@1|root,COG3795@2|Bacteria,1N4SY@1224|Proteobacteria,2UBTF@28211|Alphaproteobacteria,2JX08@204441|Rhodospirillales	204441|Rhodospirillales	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
DYD3_k127_2344582_7	196490.AUEZ01000008_gene5500	9.422e-15	78.0	COG3668@1|root,COG3668@2|Bacteria,1N7G9@1224|Proteobacteria,2UIC2@28211|Alphaproteobacteria,3K5VY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_2344582_8	366602.Caul_4041	8.581e-06	51.0	COG3905@1|root,COG3905@2|Bacteria	2|Bacteria	K	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source	-	-	-	-	-	-	-	-	-	-	-	-	RHH_1
DYD3_k127_2344582_0	1207063.P24_09726	5.962e-203	643.0	COG3572@1|root,COG3572@2|Bacteria,1MU47@1224|Proteobacteria,2TRPT@28211|Alphaproteobacteria,2JPAV@204441|Rhodospirillales	204441|Rhodospirillales	H	glutamate--cysteine ligase	gshA	-	6.3.2.2	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00894,R10993	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000	-	-	-	GCS2
DYD3_k127_2344582_4	247639.MGP2080_07112	7.457e-52	192.0	COG1075@1|root,COG1075@2|Bacteria,1NJNA@1224|Proteobacteria,1S1SK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_2344582_3	1161401.ASJA01000014_gene1050	9.375e-60	221.0	COG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,2TS0N@28211|Alphaproteobacteria,43W5T@69657|Hyphomonadaceae	28211|Alphaproteobacteria	J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	rsmE	-	2.1.1.193	ko:K09761	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_RNA
DYD3_k127_2344582_2	1244869.H261_02666	3.722e-114	375.0	COG0382@1|root,COG0382@2|Bacteria,1MV4Q@1224|Proteobacteria,2TT3I@28211|Alphaproteobacteria,2JPRK@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate	ubiA	-	2.5.1.39	ko:K03179	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R05000,R05615	RC00209,RC02895	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	UbiA
DYD3_k127_2344582_6	1429916.X566_13565	7.511e-30	120.0	COG1765@1|root,COG1765@2|Bacteria,1N2BT@1224|Proteobacteria,2TQN7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	COG1073 Hydrolases of the alpha beta superfamily	MA20_16590	-	-	ko:K06889,ko:K07397	-	-	-	-	ko00000	-	-	-	Hydrolase_4,OsmC
DYD3_k127_2363652_4	311403.Arad_7576	3e-77	268.0	COG0664@1|root,COG0664@2|Bacteria,1MVGE@1224|Proteobacteria,2U9WP@28211|Alphaproteobacteria,4BA2U@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	family. transcriptional regulator	fixKf	-	-	ko:K01420	-	-	-	-	ko00000,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_2363652_0	359.CN09_30710	1.79e-299	932.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,4B880@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_9,Response_reg
DYD3_k127_2363652_1	1500306.JQLA01000003_gene4505	3.805e-277	862.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TR7S@28211|Alphaproteobacteria,4BBW7@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	Poly-beta-hydroxybutyrate polymerase N terminal	phbC1	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	PHBC_N,PhaC_N
DYD3_k127_2363652_5	864069.MicloDRAFT_00010570	4.086e-74	256.0	COG0517@1|root,COG0517@2|Bacteria,1NY5H@1224|Proteobacteria,2U1GG@28211|Alphaproteobacteria,1JVJ7@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM CBS domain containing protein	-	-	-	-	-	-	-	-	-	-	-	-	BON,CBS
DYD3_k127_2363652_3	1502851.FG93_05455	4.594e-166	538.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTI9@28211|Alphaproteobacteria,3JVVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alcohol dehydrogenase GroES-like domain	-	-	1.1.1.1	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_2363652_2	670307.HYPDE_25638	5.168e-253	794.0	COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria,2TRZD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC	mgtA	-	3.6.3.2	ko:K01531	-	-	-	-	ko00000,ko01000	3.A.3.4	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase
DYD3_k127_236757_6	1123269.NX02_28370	3.36e-91	313.0	COG1397@1|root,COG1397@2|Bacteria,1NTUR@1224|Proteobacteria,2U0DV@28211|Alphaproteobacteria,2K2FA@204457|Sphingomonadales	204457|Sphingomonadales	OT	ADP-ribosylglycohydrolase	-	-	3.2.2.24	ko:K05521	-	-	-	-	ko00000,ko01000	-	-	-	ADP_ribosyl_GH,DSPc
DYD3_k127_236757_7	1500306.JQLA01000004_gene5409	4.282e-83	282.0	COG1051@1|root,COG1051@2|Bacteria,1QTT4@1224|Proteobacteria,2TWST@28211|Alphaproteobacteria,4BG8X@82115|Rhizobiaceae	28211|Alphaproteobacteria	F	NUDIX domain	-	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
DYD3_k127_236757_1	1500306.JQLA01000004_gene5408	3.51e-145	467.0	COG0330@1|root,COG0330@2|Bacteria,1PEW9@1224|Proteobacteria,2TVA5@28211|Alphaproteobacteria,4BI0E@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	SPFH domain / Band 7 family	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
DYD3_k127_236757_2	1500306.JQLA01000004_gene5407	8.912e-124	404.0	COG0061@1|root,COG0061@2|Bacteria,1NBI3@1224|Proteobacteria,2TUCV@28211|Alphaproteobacteria,4BI95@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP	-	-	-	-	-	-	-	-	-	-	-	-	NAD_kinase
DYD3_k127_236757_5	1144342.PMI40_03074	3.651e-94	323.0	COG0624@1|root,COG0624@2|Bacteria,1MUSU@1224|Proteobacteria,2VNMJ@28216|Betaproteobacteria	28216|Betaproteobacteria	E	peptidase	-	-	3.4.17.11	ko:K01295	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
DYD3_k127_236757_0	272943.RSP_3034	6.509e-159	516.0	COG0747@1|root,COG0747@2|Bacteria,1R5VB@1224|Proteobacteria,2U0FR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG0747 ABC-type dipeptide transport system, periplasmic component	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5,TAT_signal
DYD3_k127_236757_9	1380391.JIAS01000011_gene4920	3.066e-45	177.0	COG3665@1|root,COG3665@2|Bacteria,1N9DM@1224|Proteobacteria,2UA7H@28211|Alphaproteobacteria,2JWB8@204441|Rhodospirillales	204441|Rhodospirillales	S	Domain of unknown function (DUF1989)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1989
DYD3_k127_236757_3	272943.RSP_3033	7.745e-100	343.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,1FBNU@1060|Rhodobacter	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02032,ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
DYD3_k127_236757_4	1380350.JIAP01000011_gene6419	7.948e-100	342.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,43MWF@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EP	Oligopeptide/dipeptide transporter, C-terminal region	-	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_236757_8	1287116.X734_01880	1.455e-57	204.0	COG1173@1|root,COG1173@2|Bacteria,1MW3R@1224|Proteobacteria,2TUCW@28211|Alphaproteobacteria,43JQA@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EP	PFAM binding-protein-dependent transport systems inner membrane component	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
DYD3_k127_2370143_3	402881.Plav_0372	8.138e-111	363.0	COG1063@1|root,COG1063@2|Bacteria,1MW6Y@1224|Proteobacteria,2TSUK@28211|Alphaproteobacteria,1JP7K@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_2370143_1	1380387.JADM01000005_gene27	1.688e-212	665.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,1RNJH@1236|Gammaproteobacteria,1XHQH@135619|Oceanospirillales	135619|Oceanospirillales	I	COG1960 Acyl-CoA dehydrogenases	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_2370143_4	450851.PHZ_c1119	1.83e-110	361.0	COG1028@1|root,COG1028@2|Bacteria,1MXQR@1224|Proteobacteria,2TW65@28211|Alphaproteobacteria,2KI4P@204458|Caulobacterales	204458|Caulobacterales	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_2370143_2	402881.Plav_0370	1.767e-165	530.0	COG3173@1|root,COG3173@2|Bacteria,1MWAK@1224|Proteobacteria,2TT2N@28211|Alphaproteobacteria,1JN17@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	PFAM aminoglycoside phosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	APH
DYD3_k127_2370143_6	46429.BV95_03442	3.296e-68	239.0	COG1309@1|root,COG1309@2|Bacteria,1RJ2K@1224|Proteobacteria,2UD90@28211|Alphaproteobacteria,2KC7D@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2370143_8	101510.RHA1_ro02732	1.748e-12	73.0	COG3631@1|root,COG3631@2|Bacteria	2|Bacteria	S	light absorption	-	-	-	ko:K06893	-	-	-	-	ko00000	-	-	-	SnoaL_2
DYD3_k127_2370143_0	670292.JH26_03575	1.997e-291	902.0	COG2368@1|root,COG2368@2|Bacteria,1PEQG@1224|Proteobacteria,2TVQ7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	4-hydroxyphenylacetate 3-hydroxylase	-	-	4.2.1.120,5.3.3.3	ko:K14534	ko00650,ko00720,ko01100,ko01120,ko01200,map00650,map00720,map01100,map01120,map01200	M00374,M00375	R03031,R10782	RC01857,RC03277	ko00000,ko00001,ko00002,ko01000	-	-	-	HpaB,HpaB_N
DYD3_k127_2370143_5	1502851.FG93_06124	3.611e-73	252.0	COG1309@1|root,COG1309@2|Bacteria,1MZEP@1224|Proteobacteria,2TQNA@28211|Alphaproteobacteria,3JU9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2370143_7	1502851.FG93_06123	7.495e-62	217.0	COG1335@1|root,COG1335@2|Bacteria,1MU5N@1224|Proteobacteria,2U9MT@28211|Alphaproteobacteria,3K12D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_2370143_9	1079986.JH164872_gene3139	0.0005704	48.0	2EGC2@1|root,33A3V@2|Bacteria,2IQUS@201174|Actinobacteria	201174|Actinobacteria	S	Domain of unknown function (DUF4345)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4345
DYD3_k127_2374896_3	1054213.HMPREF9946_00983	3.956e-31	132.0	COG3842@1|root,COG3842@2|Bacteria,1PH8N@1224|Proteobacteria,2V7TP@28211|Alphaproteobacteria,2JVM2@204441|Rhodospirillales	204441|Rhodospirillales	E	TOBE domain	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran,TOBE_2
DYD3_k127_2374896_2	1502851.FG93_04649	9.503e-71	254.0	COG1177@1|root,COG1177@2|Bacteria,1MUQD@1224|Proteobacteria,2VFR4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1
DYD3_k127_2374896_1	1054213.HMPREF9946_03633	3.966e-82	283.0	COG1176@1|root,COG1176@2|Bacteria,1PDM6@1224|Proteobacteria,2U0K9@28211|Alphaproteobacteria,2JZNW@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1
DYD3_k127_2374896_0	1207063.P24_07694	1.212e-93	320.0	COG0687@1|root,COG0687@2|Bacteria,1PUQ5@1224|Proteobacteria,2VEXT@28211|Alphaproteobacteria,2JRUK@204441|Rhodospirillales	204441|Rhodospirillales	E	Bacterial extracellular solute-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_8
DYD3_k127_2374896_4	1229204.AMYY01000002_gene2527	6.266e-22	101.0	COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2TT0E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Peptidase S8 and S53 subtilisin kexin sedolisin	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S8
DYD3_k127_2387729_0	670292.JH26_27485	1.951e-126	411.0	COG0697@1|root,COG0697@2|Bacteria,1MZQM@1224|Proteobacteria,2TUPG@28211|Alphaproteobacteria,1JSVX@119045|Methylobacteriaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_2387729_1	1207063.P24_02566	2.325e-124	407.0	COG0524@1|root,COG0524@2|Bacteria,1MUUC@1224|Proteobacteria,2TS9D@28211|Alphaproteobacteria,2JPGW@204441|Rhodospirillales	204441|Rhodospirillales	G	COG0524 Sugar kinases, ribokinase family	pfkB	-	2.7.1.4	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	-	R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
DYD3_k127_2387729_5	1282876.BAOK01000002_gene145	2.107e-38	153.0	COG2981@1|root,COG2981@2|Bacteria,1MWAA@1224|Proteobacteria,2TT6E@28211|Alphaproteobacteria,4BS69@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Etoposide-induced protein 2.4 (EI24)	MA20_24505	-	-	ko:K06203	-	-	-	-	ko00000	-	-	-	EI24
DYD3_k127_2387729_6	1121033.AUCF01000003_gene3455	4.841e-36	146.0	COG1664@1|root,COG1664@2|Bacteria,1N26P@1224|Proteobacteria,2UD9Q@28211|Alphaproteobacteria,2JTDQ@204441|Rhodospirillales	204441|Rhodospirillales	M	Polymer-forming cytoskeletal	-	-	-	-	-	-	-	-	-	-	-	-	Bactofilin
DYD3_k127_2387729_8	1150626.PHAMO_280199	2.848e-07	59.0	2EHHR@1|root,33B9P@2|Bacteria,1NGHW@1224|Proteobacteria,2UJVS@28211|Alphaproteobacteria,2JUIH@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2387729_2	402881.Plav_3568	2.397e-98	324.0	COG0177@1|root,COG0177@2|Bacteria,1MUYQ@1224|Proteobacteria,2TRI2@28211|Alphaproteobacteria,1JN5Y@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate	nth	-	4.2.99.18	ko:K10773	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	EndIII_4Fe-2S,HhH-GPD
DYD3_k127_2387729_7	856793.MICA_45	5.589e-15	76.0	2CC2C@1|root,32U71@2|Bacteria,1N3IW@1224|Proteobacteria,2UIUP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2387729_3	1296990.H845_3279	1.007e-50	182.0	COG3654@1|root,COG3654@2|Bacteria,1N1FW@1224|Proteobacteria,2UEV4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	TIGRFAM death-on-curing family protein	-	-	-	ko:K07341	-	-	-	-	ko00000,ko02048	-	-	-	Fic
DYD3_k127_2387729_4	1121033.AUCF01000003_gene3457	9.077e-48	176.0	COG5488@1|root,COG5488@2|Bacteria,1NPQQ@1224|Proteobacteria,2UB81@28211|Alphaproteobacteria,2JTP1@204441|Rhodospirillales	204441|Rhodospirillales	S	Integral membrane protein (DUF2244)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2244
DYD3_k127_2409371_16	1267534.KB906754_gene2554	7.066e-05	54.0	2DZHS@1|root,32VB2@2|Bacteria,3Y54X@57723|Acidobacteria,2JJRJ@204432|Acidobacteriia	204432|Acidobacteriia	S	Protein of unknown function (DUF3106)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3106
DYD3_k127_2409371_1	1040987.AZUY01000021_gene1578	2.383e-279	885.0	COG0243@1|root,COG0243@2|Bacteria,1NS3T@1224|Proteobacteria,2TQYD@28211|Alphaproteobacteria,43IR1@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family	nasA	-	-	ko:K00372	ko00910,ko01120,map00910,map01120	M00531	R00798,R01106	RC02812	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,Molybdop_Fe4S4,Molybdopterin,Molydop_binding
DYD3_k127_2409371_4	1028800.RG540_CH34260	2.293e-98	328.0	COG0007@1|root,COG1648@1|root,COG0007@2|Bacteria,COG1648@2|Bacteria,1MUI0@1224|Proteobacteria,2TRJC@28211|Alphaproteobacteria,4B806@82115|Rhizobiaceae	28211|Alphaproteobacteria	H	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme	cobA	-	1.3.1.76,2.1.1.107,4.99.1.4	ko:K02302,ko:K02303	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02864,R03194,R03947	RC00003,RC00871,RC01012,RC01034	ko00000,ko00001,ko00002,ko01000	-	-	-	CysG_dimeriser,NAD_binding_7,Sirohm_synth_M,TP_methylase
DYD3_k127_2409371_7	269482.Bcep1808_6600	9.006e-92	308.0	COG0655@1|root,COG0655@2|Bacteria,1MW7N@1224|Proteobacteria,2VJF5@28216|Betaproteobacteria,1K5AA@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Belongs to the WrbA family	wrbA	-	1.6.5.2	ko:K03809	ko00130,ko01110,map00130,map01110	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	FMN_red
DYD3_k127_2409371_8	1238182.C882_0150	1.558e-85	293.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2TRIG@28211|Alphaproteobacteria,2JP9M@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_2409371_10	1380394.JADL01000002_gene1662	1.058e-42	173.0	COG1999@1|root,COG1999@2|Bacteria,1RHJ8@1224|Proteobacteria,2U0Q3@28211|Alphaproteobacteria,2JSPF@204441|Rhodospirillales	204441|Rhodospirillales	S	protein SCO1 SenC PrrC, involved in biogenesis of respiratory and photosynthetic systems	-	-	-	ko:K07152	-	-	-	-	ko00000,ko03029	-	-	-	SCO1-SenC
DYD3_k127_2409371_15	1205680.CAKO01000002_gene2242	2.053e-08	63.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,2UK5M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	2-Nitropropane dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2409371_14	1500257.JQNM01000009_gene853	5.404e-11	69.0	2EJW0@1|root,33DKR@2|Bacteria,1NKR7@1224|Proteobacteria,2UJTP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2409371_9	648757.Rvan_3494	2.182e-54	199.0	COG1028@1|root,COG1028@2|Bacteria,1MUUV@1224|Proteobacteria,2TR0A@28211|Alphaproteobacteria,3N6MW@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	IQ	Short-chain dehydrogenase reductase SDR	ptr1	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_2409371_5	1333998.M2A_1652	2.092e-97	322.0	COG0778@1|root,COG0778@2|Bacteria,1PG8V@1224|Proteobacteria,2U59W@28211|Alphaproteobacteria,4BQF9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Nitroreductase family	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
DYD3_k127_2409371_3	1144275.COCOR_00931	6.246e-100	333.0	COG1741@1|root,COG1741@2|Bacteria,1MWIP@1224|Proteobacteria,42Z9B@68525|delta/epsilon subdivisions,2WMPJ@28221|Deltaproteobacteria,2YTYW@29|Myxococcales	28221|Deltaproteobacteria	S	Belongs to the pirin family	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin,Pirin_C
DYD3_k127_2409371_6	1122604.JONR01000009_gene2361	8.422e-93	314.0	COG1028@1|root,COG1028@2|Bacteria,1P9R4@1224|Proteobacteria,1RWHH@1236|Gammaproteobacteria,1X5CF@135614|Xanthomonadales	135614|Xanthomonadales	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_2409371_0	1121033.AUCF01000004_gene4800	4.012e-301	934.0	COG1217@1|root,COG1217@2|Bacteria,1MV5Q@1224|Proteobacteria,2TR63@28211|Alphaproteobacteria,2JQ9U@204441|Rhodospirillales	204441|Rhodospirillales	T	GTP-binding protein TypA	typA	-	-	ko:K06207	-	-	-	-	ko00000	-	-	-	EFG_C,GTP_EFTU,GTP_EFTU_D2
DYD3_k127_2409371_13	176299.Atu1511	1.663e-24	105.0	COG3609@1|root,COG3609@2|Bacteria,1PRA1@1224|Proteobacteria,2UVUR@28211|Alphaproteobacteria,4BKQF@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	addiction module antidote protein, CC2985 family	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	-
DYD3_k127_2409371_11	176299.Atu1510	2.54e-30	124.0	COG3668@1|root,COG3668@2|Bacteria	2|Bacteria	D	Plasmid stabilization system	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_2409371_12	1461694.ATO9_03100	4.436e-25	111.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,2PECV@252301|Oceanicola	28211|Alphaproteobacteria	K	Helix-turn-helix	phrR	-	-	-	-	-	-	-	-	-	-	-	HTH_19,HTH_3
DYD3_k127_2409371_2	1089551.KE386572_gene1271	2.618e-111	365.0	COG0561@1|root,COG0561@2|Bacteria,1R4WX@1224|Proteobacteria,2TSDR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	hydrolases of the HAD superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_3
DYD3_k127_2435020_12	1121935.AQXX01000043_gene4581	9.876e-23	109.0	2DE9G@1|root,2ZM31@2|Bacteria,1NERN@1224|Proteobacteria,1T2NU@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Regulator of ribonuclease activity B	-	-	-	-	-	-	-	-	-	-	-	-	RraB
DYD3_k127_2435020_11	715226.ABI_12660	7.367e-32	130.0	COG3779@1|root,COG3779@2|Bacteria,1R3Q7@1224|Proteobacteria,2UFEG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF2314
DYD3_k127_2435020_10	216596.RL4270	7.672e-46	170.0	COG4321@1|root,COG4321@2|Bacteria,1MZP2@1224|Proteobacteria,2UD0N@28211|Alphaproteobacteria,4BEUB@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis	-	-	-	-	-	-	-	-	-	-	-	-	RHH_4
DYD3_k127_2435020_4	639283.Snov_1431	2.613e-98	324.0	COG0693@1|root,COG0693@2|Bacteria,1MY0C@1224|Proteobacteria,2TU62@28211|Alphaproteobacteria,3EYJ5@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	DJ-1/PfpI family	pfpI	-	3.5.1.124	ko:K05520	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	DJ-1_PfpI
DYD3_k127_2435020_7	1122962.AULH01000004_gene2310	1.996e-79	274.0	COG0616@1|root,COG0616@2|Bacteria,1MUXE@1224|Proteobacteria,2TSXA@28211|Alphaproteobacteria,36X8K@31993|Methylocystaceae	28211|Alphaproteobacteria	OU	Peptidase family S49	sppA	-	-	ko:K04773	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_S49
DYD3_k127_2435020_9	1333998.M2A_2824	3.247e-46	169.0	COG0776@1|root,COG0776@2|Bacteria,1MZ7M@1224|Proteobacteria,2UBR5@28211|Alphaproteobacteria,4BQH7@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	himD	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141	-	ko:K05788	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
DYD3_k127_2435020_13	1336243.JAEA01000001_gene1863	1.948e-14	77.0	COG5416@1|root,COG5416@2|Bacteria,1N7CU@1224|Proteobacteria,2UF9B@28211|Alphaproteobacteria,1JVRQ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Lipopolysaccharide assembly protein A domain	-	-	-	-	-	-	-	-	-	-	-	-	LapA_dom
DYD3_k127_2435020_6	570952.ATVH01000013_gene2613	5.907e-90	313.0	COG2423@1|root,COG2423@2|Bacteria,1MWH6@1224|Proteobacteria,2TSR9@28211|Alphaproteobacteria,2JQUK@204441|Rhodospirillales	204441|Rhodospirillales	E	Ornithine cyclodeaminase/mu-crystallin family	-	-	1.5.1.1,4.3.1.12	ko:K01750,ko:K19743	ko00310,ko00330,ko00960,ko01100,ko01110,ko01130,ko01230,map00310,map00330,map00960,map01100,map01110,map01130,map01230	-	R00671,R01246,R01249,R02201,R02203	RC00135,RC00354	ko00000,ko00001,ko01000	-	-	-	OCD_Mu_crystall
DYD3_k127_2435020_5	211165.AJLN01000050_gene5268	1.485e-95	327.0	COG0665@1|root,COG0665@2|Bacteria,1G4DH@1117|Cyanobacteria	1117|Cyanobacteria	C	Sarcosine oxidase	solA	-	-	-	-	-	-	-	-	-	-	-	DAO,FAD_binding_2
DYD3_k127_2435020_8	1105367.CG50_02455	2.965e-70	243.0	COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,2U7CH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the TrpF family	trpF	-	5.3.1.24	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03509	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	PRAI
DYD3_k127_2435020_0	1333998.M2A_2819	1.116e-216	677.0	COG0133@1|root,COG0133@2|Bacteria,1MUS8@1224|Proteobacteria,2TSHK@28211|Alphaproteobacteria,4BP9D@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine	trpB	GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.1.20	ko:K01696	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
DYD3_k127_2435020_3	78245.Xaut_1695	4.551e-110	366.0	COG0159@1|root,COG0159@2|Bacteria,1MXJV@1224|Proteobacteria,2TQN2@28211|Alphaproteobacteria,3EY1C@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate	trpA	-	4.2.1.20	ko:K01695	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000	-	-	-	Trp_syntA
DYD3_k127_2435020_1	1207063.P24_06996	6.996e-122	397.0	COG0777@1|root,COG0777@2|Bacteria,1MW8G@1224|Proteobacteria,2TRSH@28211|Alphaproteobacteria,2JPA4@204441|Rhodospirillales	204441|Rhodospirillales	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA	accD	-	2.1.3.15,6.4.1.2	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
DYD3_k127_2435020_2	570952.ATVH01000013_gene2620	3.06e-110	365.0	COG0285@1|root,COG0285@2|Bacteria,1MVCH@1224|Proteobacteria,2TR64@28211|Alphaproteobacteria,2JPGC@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the folylpolyglutamate synthase family	folC	-	6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	Mur_ligase_M
DYD3_k127_2443597_2	269482.Bcep1808_5124	6.09e-49	184.0	COG0583@1|root,COG0583@2|Bacteria,1R509@1224|Proteobacteria,2W1P2@28216|Betaproteobacteria,1K1RT@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_2443597_6	1121405.dsmv_2914	7.621e-16	82.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,2MI07@213118|Desulfobacterales	28221|Deltaproteobacteria	T	PFAM response regulator receiver	-	-	-	ko:K02481,ko:K07712	ko02020,map02020	M00497	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD3_k127_2443597_1	666685.R2APBS1_1319	4.02e-56	203.0	COG0637@1|root,COG0637@2|Bacteria,1QXCM@1224|Proteobacteria,1T47N@1236|Gammaproteobacteria,1X62V@135614|Xanthomonadales	135614|Xanthomonadales	S	Haloacid dehalogenase-like hydrolase	-	-	3.8.1.2	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05287	RC00697	ko00000,ko00001,ko01000	-	-	-	HAD_2
DYD3_k127_2443597_7	314270.RB2083_1508	9.798e-13	74.0	COG0257@1|root,COG0257@2|Bacteria,1NGBJ@1224|Proteobacteria,2UJAG@28211|Alphaproteobacteria,3ZHY3@58840|unclassified Rhodobacteraceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL36 family	rpmJ	-	-	ko:K02919	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L36
DYD3_k127_2443597_3	652103.Rpdx1_3867	1.748e-30	124.0	COG3668@1|root,COG3668@2|Bacteria,1N0DW@1224|Proteobacteria,2VGS6@28211|Alphaproteobacteria,3K4ID@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_2443597_4	1265502.KB905965_gene1352	3.116e-25	108.0	COG3609@1|root,COG3609@2|Bacteria,1NA19@1224|Proteobacteria	1224|Proteobacteria	K	transcriptional regulators containing the CopG Arc MetJ DNA-binding domain	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_2443597_5	402881.Plav_2655	1.048e-17	93.0	COG1309@1|root,COG1309@2|Bacteria,1NB0Y@1224|Proteobacteria,2UHI5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
DYD3_k127_2443597_0	314266.SKA58_11428	2.167e-145	477.0	COG1018@1|root,COG3239@1|root,COG1018@2|Bacteria,COG3239@2|Bacteria,1MU6E@1224|Proteobacteria,2TRE9@28211|Alphaproteobacteria,2K4R4@204457|Sphingomonadales	204457|Sphingomonadales	C	2Fe-2S iron-sulfur cluster binding domain	pcpD	-	1.1.1.404	ko:K03863,ko:K21607	ko00361,ko00627,ko01100,ko01120,map00361,map00627,map01100,map01120	-	R05274,R11585	RC00392,RC01533	ko00000,ko00001,ko01000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_245300_3	1207063.P24_10375	1.716e-63	225.0	COG0232@1|root,COG0232@2|Bacteria,1MVQ2@1224|Proteobacteria,2TRCD@28211|Alphaproteobacteria,2JQG9@204441|Rhodospirillales	204441|Rhodospirillales	F	deoxyguanosinetriphosphate triphosphohydrolase-like protein	-	-	3.1.5.1	ko:K01129	ko00230,map00230	-	R01856	RC00017	ko00000,ko00001,ko01000	-	-	-	HD,HD_assoc
DYD3_k127_245300_5	1162668.LFE_1604	7.509e-28	119.0	2E4QW@1|root,32ZJG@2|Bacteria	2|Bacteria	S	Protein of unknown function (DUF3995)	M1-716	-	-	-	-	-	-	-	-	-	-	-	DUF3995
DYD3_k127_245300_4	1380394.JADL01000005_gene5660	3.866e-38	147.0	COG0316@1|root,COG0316@2|Bacteria,1RHCW@1224|Proteobacteria,2UBR8@28211|Alphaproteobacteria,2JTBS@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the HesB IscA family	-	-	-	ko:K15724	-	-	-	-	ko00000	-	-	-	Fe-S_biosyn
DYD3_k127_245300_2	331869.BAL199_25074	5.093e-100	332.0	COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,2TR5J@28211|Alphaproteobacteria,4BPGI@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	PFAM Endonuclease Exonuclease phosphatase family	xth	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
DYD3_k127_245300_0	1123256.KB907932_gene2944	7.704e-108	359.0	COG2207@1|root,COG2207@2|Bacteria,1NC3I@1224|Proteobacteria,1RS26@1236|Gammaproteobacteria,1X5RY@135614|Xanthomonadales	135614|Xanthomonadales	K	Arabinose-binding domain of AraC transcription regulator, N-term	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_245300_1	1123261.AXDW01000006_gene2428	7.419e-101	336.0	COG3687@1|root,COG3687@2|Bacteria,1R8U6@1224|Proteobacteria,1RQUW@1236|Gammaproteobacteria,1X4PI@135614|Xanthomonadales	135614|Xanthomonadales	S	Predicted metal-dependent hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Metal_hydrol
DYD3_k127_2455994_0	595537.Varpa_1136	2.808e-146	471.0	COG1840@1|root,COG1840@2|Bacteria,1MXZ8@1224|Proteobacteria,2VKTZ@28216|Betaproteobacteria,4AB2I@80864|Comamonadaceae	28216|Betaproteobacteria	P	TIGRFAM 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component	-	-	-	ko:K02012	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.10	-	-	SBP_bac_6
DYD3_k127_2455994_1	1112216.JH594425_gene96	5.381e-14	83.0	2AB1E@1|root,310F2@2|Bacteria,1PNFB@1224|Proteobacteria,2V119@28211|Alphaproteobacteria,2KB0S@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2484097_0	1175306.GWL_38270	1.459e-66	233.0	COG1284@1|root,COG1284@2|Bacteria,1RDIV@1224|Proteobacteria,2VQSX@28216|Betaproteobacteria,475I1@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Uncharacterised 5xTM membrane BCR, YitT family COG1284	-	-	-	-	-	-	-	-	-	-	-	-	YitT_membrane
DYD3_k127_2484097_1	1244869.H261_17121	2.763e-48	183.0	COG2240@1|root,COG2240@2|Bacteria,1MVC9@1224|Proteobacteria,2U2CH@28211|Alphaproteobacteria,2JQ9N@204441|Rhodospirillales	204441|Rhodospirillales	H	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP	pdxY	-	2.7.1.35	ko:K00868	ko00750,ko01100,map00750,map01100	-	R00174,R01909,R02493	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	Phos_pyr_kin
DYD3_k127_2484097_2	1028800.RG540_CH26290	1.768e-23	110.0	2EFHI@1|root,339A3@2|Bacteria,1P7AX@1224|Proteobacteria	1224|Proteobacteria	S	Papain-like cysteine protease AvrRpt2	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C70
DYD3_k127_2505473_7	1041147.AUFB01000002_gene2933	2.974e-14	80.0	COG1051@1|root,COG1051@2|Bacteria,1QU3V@1224|Proteobacteria,2TVYC@28211|Alphaproteobacteria,4BNQB@82115|Rhizobiaceae	28211|Alphaproteobacteria	F	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_2505473_3	1449065.JMLL01000010_gene825	5.501e-55	202.0	COG3249@1|root,COG3249@2|Bacteria,1PR3V@1224|Proteobacteria,2U1M2@28211|Alphaproteobacteria,43KKD@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	ko:K09938	-	-	-	-	ko00000	-	-	-	DUF2066
DYD3_k127_2505473_1	1279038.KB907338_gene1013	5.208e-89	299.0	COG0564@1|root,COG0564@2|Bacteria,1MVJ5@1224|Proteobacteria,2TSCG@28211|Alphaproteobacteria,2JRQD@204441|Rhodospirillales	204441|Rhodospirillales	J	COG0564 Pseudouridylate synthases, 23S RNA-specific	-	-	5.4.99.28,5.4.99.29	ko:K06177	-	-	-	-	ko00000,ko01000,ko03009,ko03016	-	-	-	PseudoU_synth_2
DYD3_k127_2505473_4	1121015.N789_10335	6.759e-52	196.0	COG2815@1|root,COG2815@2|Bacteria,1N5XX@1224|Proteobacteria	1224|Proteobacteria	L	TIR domain	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_2505473_2	1123072.AUDH01000001_gene3156	5.713e-72	253.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2U2WI@28211|Alphaproteobacteria,2JTTB@204441|Rhodospirillales	204441|Rhodospirillales	K	LysR substrate binding domain	-	-	-	ko:K18297	-	M00641,M00745	-	-	ko00000,ko00002,ko01504,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_2505473_6	1121861.KB899939_gene3788	4.332e-37	145.0	COG2259@1|root,COG2259@2|Bacteria,1N06A@1224|Proteobacteria,2U6MK@28211|Alphaproteobacteria,2JTS9@204441|Rhodospirillales	204441|Rhodospirillales	S	DoxX	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD3_k127_2505473_0	1408418.JNJH01000004_gene1955	1.574e-89	302.0	COG3384@1|root,COG3384@2|Bacteria,1MXJZ@1224|Proteobacteria,2TRJT@28211|Alphaproteobacteria,2JSBT@204441|Rhodospirillales	204441|Rhodospirillales	S	Catalytic LigB subunit of aromatic ring-opening dioxygenase	-	-	-	ko:K15777	ko00965,map00965	-	R08836	RC00387	ko00000,ko00001,ko01000	-	-	-	LigB
DYD3_k127_2505473_5	502025.Hoch_1681	2.22e-51	186.0	COG0451@1|root,COG0451@2|Bacteria,1P603@1224|Proteobacteria,42NGH@68525|delta/epsilon subdivisions,2WKS6@28221|Deltaproteobacteria,2YV7C@29|Myxococcales	28221|Deltaproteobacteria	M	RmlD substrate binding domain	-	-	1.1.1.394,1.1.1.412	ko:K21271,ko:K22320	-	-	-	-	ko00000,ko01000	-	-	-	3Beta_HSD
DYD3_k127_2511306_6	1207063.P24_00140	1.03e-49	191.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,2JQKA@204441|Rhodospirillales	204441|Rhodospirillales	P	COG2217 Cation transport ATPase	-	-	3.6.3.4	ko:K01533	-	-	R00086	RC00002	ko00000,ko01000	3.A.3.5	-	-	ATPase-cat_bd,E1-E2_ATPase,HMA,Hydrolase
DYD3_k127_2511306_9	1122137.AQXF01000003_gene2276	8.621e-15	81.0	COG5456@1|root,COG5456@2|Bacteria	2|Bacteria	P	FixH	fixH	-	-	-	-	-	-	-	-	-	-	-	FixH
DYD3_k127_2511306_1	1123366.TH3_04389	3.619e-160	518.0	COG0348@1|root,COG0348@2|Bacteria,1MVFY@1224|Proteobacteria,2TRYB@28211|Alphaproteobacteria,2JPH9@204441|Rhodospirillales	204441|Rhodospirillales	C	Nitrogen fixation protein fixG	fixG	-	-	-	-	-	-	-	-	-	-	-	Fer4_18,Fer4_5,FixG_C
DYD3_k127_2511306_4	1207063.P24_00095	3.637e-70	242.0	COG2010@1|root,COG2010@2|Bacteria,1MUCW@1224|Proteobacteria,2TQW1@28211|Alphaproteobacteria,2JPRY@204441|Rhodospirillales	204441|Rhodospirillales	C	C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex	ccoP	-	-	ko:K00406	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002	3.D.4.3	-	-	Cytochrome_CBB3,FixP_N
DYD3_k127_2511306_8	1316936.K678_03829	5.645e-24	106.0	COG2010@1|root,COG2010@2|Bacteria,1MUCW@1224|Proteobacteria,2TQW1@28211|Alphaproteobacteria,2JPRY@204441|Rhodospirillales	204441|Rhodospirillales	C	C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex	ccoP	-	-	ko:K00406	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002	3.D.4.3	-	-	Cytochrome_CBB3,FixP_N
DYD3_k127_2511306_2	1122929.KB908215_gene880	4.281e-104	344.0	COG2993@1|root,COG2993@2|Bacteria,1MXEY@1224|Proteobacteria,2TRGW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit	ccoO	-	-	ko:K00405	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002	3.D.4.3	-	-	FixO
DYD3_k127_2511306_0	648757.Rvan_2927	1.059e-240	752.0	COG3278@1|root,COG3278@2|Bacteria,1MU18@1224|Proteobacteria,2TR2C@28211|Alphaproteobacteria,3N7QH@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	Belongs to the heme-copper respiratory oxidase family	ccoN	GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0022900,GO:0022904,GO:0034220,GO:0044237,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600	1.9.3.1	ko:K00404	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	COX1
DYD3_k127_2511306_5	1528106.JRJE01000009_gene1771	2.873e-65	231.0	COG5473@1|root,COG5473@2|Bacteria,1MVRU@1224|Proteobacteria,2TRUD@28211|Alphaproteobacteria,2JS06@204441|Rhodospirillales	204441|Rhodospirillales	S	Predicted integral membrane protein (DUF2189)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2189
DYD3_k127_2511306_10	1125973.JNLC01000010_gene1886	1.376e-05	51.0	COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria,2TRZD@28211|Alphaproteobacteria,3JR79@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.8	ko:K01537	-	-	-	-	ko00000,ko01000	3.A.3.2	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase
DYD3_k127_2511306_7	1510531.JQJJ01000012_gene1644	1.741e-44	168.0	COG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2UBYU@28211|Alphaproteobacteria,3JTR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	ko:K12262	-	-	-	-	ko00000	-	-	-	Ni_hydr_CYTB,YceI
DYD3_k127_2511306_3	1038858.AXBA01000011_gene1529	5.516e-71	248.0	COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria,2TRZD@28211|Alphaproteobacteria,3F122@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	Cation transporter/ATPase, N-terminus	mgtA	-	3.6.3.2	ko:K01531	-	-	-	-	ko00000,ko01000	3.A.3.4	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase
DYD3_k127_2541297_2	883078.HMPREF9695_02071	7.279e-105	349.0	COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,2TT58@28211|Alphaproteobacteria,3JU34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	nnrD	-	-	-	-	-	-	-	-	-	-	-	Carb_kinase,YjeF_N
DYD3_k127_2541297_4	1080067.BAZH01000008_gene77	3.431e-07	52.0	2AYT6@1|root,31QYG@2|Bacteria,1QNH4@1224|Proteobacteria,1TM2S@1236|Gammaproteobacteria,3WZPT@544|Citrobacter	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2541297_1	414684.RC1_1249	2.705e-129	428.0	COG0544@1|root,COG0544@2|Bacteria,1MUJP@1224|Proteobacteria,2TS8W@28211|Alphaproteobacteria,2JR1Y@204441|Rhodospirillales	204441|Rhodospirillales	D	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase	tig	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K03545	-	-	-	-	ko00000	-	-	-	FKBP_C,Trigger_C,Trigger_N
DYD3_k127_2541297_3	1121861.KB899918_gene3347	6.488e-99	326.0	COG0740@1|root,COG0740@2|Bacteria,1MV46@1224|Proteobacteria,2TR5M@28211|Alphaproteobacteria,2JPC3@204441|Rhodospirillales	204441|Rhodospirillales	OU	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	clpP	-	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	CLP_protease
DYD3_k127_2541297_0	1244869.H261_11284	1.081e-238	741.0	COG1219@1|root,COG1219@2|Bacteria,1MVQK@1224|Proteobacteria,2TS3R@28211|Alphaproteobacteria,2JQFG@204441|Rhodospirillales	204441|Rhodospirillales	O	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP	clpX	-	-	ko:K03544	ko04112,map04112	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA_2,ClpB_D2-small,zf-C4_ClpX
DYD3_k127_2541442_1	1380391.JIAS01000012_gene4429	1.191e-56	204.0	COG1605@1|root,COG1605@2|Bacteria,1MWTP@1224|Proteobacteria,2TV3Z@28211|Alphaproteobacteria,2JRWA@204441|Rhodospirillales	204441|Rhodospirillales	E	chorismate mutase	-	-	-	-	-	-	-	-	-	-	-	-	CM_2
DYD3_k127_2541442_0	414684.RC1_4083	1.404e-192	607.0	COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,2TQYA@28211|Alphaproteobacteria,2JQPA@204441|Rhodospirillales	204441|Rhodospirillales	E	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	metXA	-	2.3.1.31	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	-	R01776	RC00004,RC00041	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_2578420_0	1054213.HMPREF9946_02915	0.0	1510.0	COG0506@1|root,COG4230@1|root,COG0506@2|Bacteria,COG4230@2|Bacteria,1MV93@1224|Proteobacteria,2TQPT@28211|Alphaproteobacteria,2JPKY@204441|Rhodospirillales	204441|Rhodospirillales	CE	Oxidizes proline to glutamate for use as a carbon and nitrogen source	putA	-	1.2.1.88,1.5.5.2	ko:K13821	ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130	-	R00245,R00707,R00708,R01253,R04444,R04445,R05051	RC00080,RC00083,RC00216,RC00242,RC00255	ko00000,ko00001,ko01000,ko03000	-	-	-	Aldedh,Pro_dh,Pro_dh-DNA_bdg
DYD3_k127_257943_2	1121033.AUCF01000018_gene5796	1.427e-145	469.0	COG0505@1|root,COG0505@2|Bacteria,1MUB9@1224|Proteobacteria,2TR3W@28211|Alphaproteobacteria,2JPGJ@204441|Rhodospirillales	204441|Rhodospirillales	F	Belongs to the CarA family	carA	-	6.3.5.5	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000	-	-	-	CPSase_sm_chain,GATase
DYD3_k127_257943_3	414684.RC1_2008	1.791e-45	169.0	COG1610@1|root,COG1610@2|Bacteria,1RGZS@1224|Proteobacteria,2U7DJ@28211|Alphaproteobacteria,2JSU8@204441|Rhodospirillales	204441|Rhodospirillales	S	Yqey-like protein	-	-	-	ko:K09117	-	-	-	-	ko00000	-	-	-	YqeY
DYD3_k127_257943_1	1316936.K678_06647	1.034e-147	490.0	COG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,2TRU2@28211|Alphaproteobacteria,2JPMY@204441|Rhodospirillales	204441|Rhodospirillales	L	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	dnaG	-	-	ko:K02316	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB_bind,Toprim_4,Toprim_N,zf-CHC2
DYD3_k127_257943_0	402881.Plav_2317	1.282e-229	724.0	COG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,2TS6C@28211|Alphaproteobacteria,1JN6W@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	rpoD	-	-	ko:K03086	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
DYD3_k127_2586064_2	1244869.H261_08223	3.393e-121	394.0	COG0606@1|root,COG0606@2|Bacteria,1MU4R@1224|Proteobacteria,2TQU6@28211|Alphaproteobacteria,2JP8C@204441|Rhodospirillales	204441|Rhodospirillales	O	ATPase with chaperone activity	-	-	-	ko:K07391	-	-	-	-	ko00000	-	-	-	ChlI,Mg_chelatase,Mg_chelatase_C
DYD3_k127_2586064_4	935840.JAEQ01000033_gene2388	5.515e-45	165.0	COG0640@1|root,COG0640@2|Bacteria,1N72Q@1224|Proteobacteria,2UFSY@28211|Alphaproteobacteria,43KJU@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_5
DYD3_k127_2586064_0	1040983.AXAE01000011_gene3064	8.419e-230	717.0	COG0446@1|root,COG0446@2|Bacteria,1QSG6@1224|Proteobacteria,2TUP1@28211|Alphaproteobacteria,43HRG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Pyridine nucleotide-disulphide oxidoreductase	sqr	-	1.8.5.4	ko:K17218	ko00920,map00920	-	R10152	RC03155	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD3_k127_2586064_5	876269.ARWA01000001_gene3651	1.678e-26	109.0	COG0607@1|root,30JT4@2|Bacteria,1PGKF@1224|Proteobacteria,2UZPU@28211|Alphaproteobacteria,3NCUW@45404|Beijerinckiaceae	28211|Alphaproteobacteria	P	Protein of unknown function (DUF2892)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2892
DYD3_k127_2586064_3	266779.Meso_2287	3.423e-119	405.0	COG0845@1|root,COG0845@2|Bacteria,1MXU4@1224|Proteobacteria,2TUXB@28211|Alphaproteobacteria,43I83@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_2586064_1	504832.OCAR_6818	4.479e-157	507.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JURY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_2589627_4	859657.RPSI07_mp0130	5.432e-31	127.0	2EJTG@1|root,33DI3@2|Bacteria,1N58D@1224|Proteobacteria,2VZ1A@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Domain of unknown function (DUF4259)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4259
DYD3_k127_2589627_0	1403819.BATR01000093_gene2901	2.863e-161	533.0	COG4773@1|root,COG4773@2|Bacteria	2|Bacteria	P	Receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	CarboxypepD_reg,Plug,TonB_dep_Rec
DYD3_k127_2589627_3	450851.PHZ_c3325	3.399e-33	140.0	COG0824@1|root,COG0824@2|Bacteria,1RA27@1224|Proteobacteria,2U6W6@28211|Alphaproteobacteria,2KGH7@204458|Caulobacterales	204458|Caulobacterales	S	Thioesterase-like superfamily	-	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT_2
DYD3_k127_2589627_1	861299.J421_1235	1.996e-55	202.0	COG0637@1|root,COG0637@2|Bacteria,1ZTWJ@142182|Gemmatimonadetes	142182|Gemmatimonadetes	S	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
DYD3_k127_2589627_2	258594.RPA2137	7.549e-52	184.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JSPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_22980	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_2612019_4	1125973.JNLC01000013_gene3914	1.501e-75	256.0	COG0404@1|root,COG0446@1|root,COG0404@2|Bacteria,COG0446@2|Bacteria,1MVEK@1224|Proteobacteria,2TTD7@28211|Alphaproteobacteria,3JTMR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glycine cleavage T-protein C-terminal barrel domain	-	-	1.5.3.1	ko:K00302	ko00260,ko01100,map00260,map01100	-	R00610	RC00060,RC00557	ko00000,ko00001,ko01000	-	-	-	FAD_oxidored,Fer2_4,GCV_T,GCV_T_C,Pyr_redox_2
DYD3_k127_2612019_7	1125973.JNLC01000013_gene3915	6.325e-46	168.0	COG4311@1|root,COG4311@2|Bacteria,1MZC3@1224|Proteobacteria,2UC8C@28211|Alphaproteobacteria,3K143@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Sarcosine oxidase, delta subunit family	soxD	-	1.5.3.1	ko:K00304	ko00260,ko01100,map00260,map01100	-	R00610	RC00060,RC00557	ko00000,ko00001,ko01000	-	-	-	SoxD
DYD3_k127_2612019_0	391165.GbCGDNIH1_0082	9.121e-235	730.0	COG0665@1|root,COG0665@2|Bacteria,1MVM6@1224|Proteobacteria,2TRM7@28211|Alphaproteobacteria,2JR24@204441|Rhodospirillales	204441|Rhodospirillales	E	FAD dependent oxidoreductase	-	-	1.5.3.1	ko:K00303	ko00260,ko01100,map00260,map01100	-	R00610	RC00060,RC00557	ko00000,ko00001,ko01000	-	-	-	DAO
DYD3_k127_2612019_3	1244869.H261_17513	2.579e-88	306.0	COG0464@1|root,COG0464@2|Bacteria,1RFP5@1224|Proteobacteria,2UDH0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	ATPase family associated with various cellular activities (AAA)	-	-	-	-	-	-	-	-	-	-	-	-	AAA
DYD3_k127_2612019_5	991905.SL003B_0236	1.724e-68	239.0	COG3917@1|root,COG3917@2|Bacteria,1RDNQ@1224|Proteobacteria,2U632@28211|Alphaproteobacteria,4BQUS@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	Q	DSBA-like thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	DSBA
DYD3_k127_2612019_9	1121352.JHZP01000012_gene1695	5.377e-06	59.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2VM3A@28216|Betaproteobacteria,2KPMA@206351|Neisseriales	206351|Neisseriales	KLT	Psort location Extracellular, score	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
DYD3_k127_2612019_8	377629.TERTU_4246	1.627e-30	126.0	2C4SU@1|root,33I95@2|Bacteria,1P5MM@1224|Proteobacteria	1224|Proteobacteria	S	Domain of unknown function (DUF4304)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4304
DYD3_k127_2612019_1	502025.Hoch_2410	8.788e-181	575.0	COG4553@1|root,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,42Y4B@68525|delta/epsilon subdivisions,2WSY8@28221|Deltaproteobacteria	28221|Deltaproteobacteria	I	PHB de-polymerase C-terminus	-	-	3.1.1.75	ko:K05973	ko00650,map00650	-	R05118	-	ko00000,ko00001,ko01000	-	-	-	PHB_depo_C
DYD3_k127_2612019_6	1429916.X566_05255	3.322e-57	205.0	COG1309@1|root,COG1309@2|Bacteria,1NCEF@1224|Proteobacteria,2TR7K@28211|Alphaproteobacteria,3JSCU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2612019_2	1122132.AQYH01000004_gene1543	3.037e-109	365.0	COG0477@1|root,COG0477@2|Bacteria,1MX9T@1224|Proteobacteria,2TUQC@28211|Alphaproteobacteria,4BDK2@82115|Rhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_2618922_5	391615.ABSJ01000027_gene181	2.633e-13	70.0	COG3239@1|root,COG3239@2|Bacteria,1QKDT@1224|Proteobacteria,1RQCX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	fatty acid desaturase	-	-	1.14.19.3	ko:K00508	ko00591,ko01100,map00591,map01100	-	R07063	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
DYD3_k127_2618922_2	573370.DMR_02280	2.467e-34	136.0	COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,42SEH@68525|delta/epsilon subdivisions,2WPB9@28221|Deltaproteobacteria,2MG7M@213115|Desulfovibrionales	28221|Deltaproteobacteria	FG	PFAM Histidine triad (HIT) protein	-	-	-	ko:K02503	-	-	-	-	ko00000,ko04147	-	-	-	HIT
DYD3_k127_2618922_0	1278073.MYSTI_08018	3.188e-102	349.0	COG4637@1|root,COG4637@2|Bacteria,1ND40@1224|Proteobacteria,42MR3@68525|delta/epsilon subdivisions,2WKWG@28221|Deltaproteobacteria,2YTTA@29|Myxococcales	28221|Deltaproteobacteria	S	AAA domain, putative AbiEii toxin, Type IV TA system	-	-	-	-	-	-	-	-	-	-	-	-	AAA_15,AAA_21
DYD3_k127_2618922_1	1442599.JAAN01000024_gene2004	8.793e-51	189.0	COG4700@1|root,COG4700@2|Bacteria,1R577@1224|Proteobacteria,1S5I8@1236|Gammaproteobacteria,1X5VW@135614|Xanthomonadales	135614|Xanthomonadales	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_19
DYD3_k127_2618922_3	266834.SM_b20879	3.463e-15	81.0	COG5622@1|root,COG5622@2|Bacteria,1N6XP@1224|Proteobacteria,2UFG2@28211|Alphaproteobacteria,4BN08@82115|Rhizobiaceae	28211|Alphaproteobacteria	N	Protein required for attachment to host cells	-	-	-	-	-	-	-	-	-	-	-	-	Host_attach
DYD3_k127_2620817_1	1123355.JHYO01000022_gene31	1.673e-90	321.0	COG1033@1|root,COG2905@1|root,COG1033@2|Bacteria,COG2905@2|Bacteria,1MUE1@1224|Proteobacteria,2TRI9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	exporters of the RND superfamily	MA20_16090	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
DYD3_k127_2620817_3	1123355.JHYO01000022_gene26	3.04e-42	174.0	2BVFV@1|root,32QUZ@2|Bacteria,1RHCR@1224|Proteobacteria,2UBBE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2620817_0	1380391.JIAS01000004_gene2975	2.648e-160	527.0	COG0443@1|root,COG0443@2|Bacteria,1MXBT@1224|Proteobacteria,2TS1I@28211|Alphaproteobacteria,2JQWY@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the heat shock protein 70 family	-	-	-	ko:K04046	-	-	-	-	ko00000,ko03110	1.A.33	-	-	HSP70
DYD3_k127_2620817_2	1502851.FG93_02920	4.938e-68	231.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,2TTVR@28211|Alphaproteobacteria,3JR7S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_27820	GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0015036,GO:0016491,GO:0016667,GO:0050896,GO:0055114	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_N,GST_N_3
DYD3_k127_2626179_5	991905.SL003B_2038	1.298e-07	64.0	COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,4BQ21@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	tolC	-	-	ko:K12340	ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133	M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko02044	1.B.17,2.A.6.2	-	-	OEP
DYD3_k127_2626179_1	314278.NB231_05941	1.859e-101	350.0	COG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,1RNK4@1236|Gammaproteobacteria,1WWIZ@135613|Chromatiales	135613|Chromatiales	M	Type I secretion membrane fusion protein, HlyD	-	-	-	ko:K16300	-	M00571	-	-	ko00000,ko00002,ko02000,ko02044	8.A.1.3.3	-	-	HlyD,HlyD_3
DYD3_k127_2626179_0	314278.NB231_05946	2.593e-144	476.0	COG4618@1|root,COG4618@2|Bacteria,1NTI5@1224|Proteobacteria,1T1HR@1236|Gammaproteobacteria,1X2NS@135613|Chromatiales	135613|Chromatiales	V	Type I secretion system	-	-	-	ko:K16299	ko02010,map02010	M00571	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	3.A.1.110.10	-	-	ABC_membrane,ABC_tran
DYD3_k127_2626179_4	1333998.M2A_2588	1.051e-85	300.0	COG0625@1|root,COG0625@2|Bacteria,1R3VG@1224|Proteobacteria,2U50H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	COG0625 Glutathione S-transferase	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N_3
DYD3_k127_2626179_2	1122603.ATVI01000006_gene340	3.933e-97	331.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,1RMF7@1236|Gammaproteobacteria,1X3GH@135614|Xanthomonadales	135614|Xanthomonadales	O	Belongs to the GST superfamily	-	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_N,GST_N_3
DYD3_k127_2626179_3	314225.ELI_09820	3.672e-95	322.0	COG0625@1|root,COG0625@2|Bacteria,1Q9ND@1224|Proteobacteria,2TT22@28211|Alphaproteobacteria,2K4YB@204457|Sphingomonadales	204457|Sphingomonadales	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N_3
DYD3_k127_2643628_2	258594.RPA1409	1.392e-107	355.0	COG0600@1|root,COG0600@2|Bacteria,1MWDJ@1224|Proteobacteria,2TTR3@28211|Alphaproteobacteria,3JR5N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_2643628_5	1122613.ATUP01000001_gene1729	1.708e-38	150.0	COG0802@1|root,COG0802@2|Bacteria,1RGYU@1224|Proteobacteria,2UBQ9@28211|Alphaproteobacteria,43Y3K@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	ATPase or kinase	-	-	2.7.1.221	ko:K06925,ko:K07102	ko00520,ko01100,map00520,map01100	-	R08968,R11024	RC00002,RC00078	ko00000,ko00001,ko01000,ko03016	-	-	-	TsaE
DYD3_k127_2643628_3	1380394.JADL01000002_gene1678	2.293e-92	316.0	COG3178@1|root,COG3178@2|Bacteria,1MXCH@1224|Proteobacteria,2TSJD@28211|Alphaproteobacteria,2JPII@204441|Rhodospirillales	204441|Rhodospirillales	S	phosphotransferase related to Ser Thr protein kinases	-	-	2.7.1.221	ko:K07102	ko00520,ko01100,map00520,map01100	-	R08968,R11024	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	APH
DYD3_k127_2643628_4	426355.Mrad2831_4543	1.814e-83	295.0	COG1208@1|root,COG1208@2|Bacteria,1R9ZD@1224|Proteobacteria,2TU2V@28211|Alphaproteobacteria,1JR18@119045|Methylobacteriaceae	28211|Alphaproteobacteria	JM	PFAM Nucleotidyl transferase	MA20_24100	-	2.7.7.13,2.7.7.99	ko:K00966,ko:K00992	ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110	M00114,M00361,M00362	R00885,R11025	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transf_3,NTP_transferase
DYD3_k127_2643628_0	1244869.H261_20043	4.477e-255	820.0	COG2887@1|root,COG3893@1|root,COG2887@2|Bacteria,COG3893@2|Bacteria,1MY2G@1224|Proteobacteria,2TS74@28211|Alphaproteobacteria,2JR61@204441|Rhodospirillales	204441|Rhodospirillales	L	PD-(D/E)XK nuclease superfamily	-	-	3.6.4.12	ko:K16899	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1
DYD3_k127_2643628_1	1333998.M2A_2814	8.797e-134	456.0	COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2TQJZ@28211|Alphaproteobacteria,4BP6D@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	PD-(D/E)XK nuclease superfamily	addA	-	3.6.4.12	ko:K16898	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
DYD3_k127_2653981_0	416269.APL_1457	7.735e-104	347.0	COG0580@1|root,COG0580@2|Bacteria,1MXTJ@1224|Proteobacteria,1RPKU@1236|Gammaproteobacteria,1Y6ZS@135625|Pasteurellales	135625|Pasteurellales	G	Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity	aqpZ	-	-	ko:K06188	-	-	-	-	ko00000,ko02000	1.A.8	-	-	MIP
DYD3_k127_2653981_1	748247.AZKH_p0280	2.713e-80	277.0	COG1526@1|root,COG1526@2|Bacteria,1NRU0@1224|Proteobacteria,2VQ5Z@28216|Betaproteobacteria,2KUJK@206389|Rhodocyclales	206389|Rhodocyclales	C	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH	fdhD	-	-	ko:K02379,ko:K18360	ko00360,map00360	-	R07222,R07294	RC00004,RC01844,RC01903	ko00000,ko00001	-	-	-	FdhD-NarQ
DYD3_k127_2653981_3	639283.Snov_1691	2.94e-64	224.0	COG1763@1|root,COG1763@2|Bacteria,1RD3Q@1224|Proteobacteria,2U5T0@28211|Alphaproteobacteria,3F09F@335928|Xanthobacteraceae	28211|Alphaproteobacteria	H	Molybdopterin guanine dinucleotide synthesis protein B	mobB	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	ko:K03753	-	-	-	-	ko00000	-	-	-	MobB
DYD3_k127_2653981_2	1121106.JQKB01000004_gene2348	1.193e-79	279.0	COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,2TQRI@28211|Alphaproteobacteria,2JQ0Y@204441|Rhodospirillales	204441|Rhodospirillales	H	COG0303 Molybdopterin biosynthesis enzyme	-	-	2.10.1.1	ko:K03750	ko00790,ko01100,map00790,map01100	-	R09735	RC03462	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N
DYD3_k127_2664784_0	1168059.KB899087_gene285	8.895e-93	312.0	COG0834@1|root,COG0834@2|Bacteria,1PGHD@1224|Proteobacteria,2V69N@28211|Alphaproteobacteria,3F084@335928|Xanthobacteraceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_2664784_1	1380391.JIAS01000003_gene1856	4.022e-76	265.0	COG0111@1|root,COG0111@2|Bacteria,1MW1U@1224|Proteobacteria,2TSUU@28211|Alphaproteobacteria,2JPHD@204441|Rhodospirillales	204441|Rhodospirillales	EH	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	-	-	1.1.1.79,1.1.1.81	ko:K12972	ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00260,map00620,map00630,map01100,map01110,map01120	-	R00465,R01388,R01392,R02527	RC00031,RC00042,RC00670	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh_C
DYD3_k127_2665617_2	1541065.JRFE01000026_gene2123	3.151e-55	205.0	COG0491@1|root,COG0491@2|Bacteria,1GNN3@1117|Cyanobacteria,3VNCV@52604|Pleurocapsales	1117|Cyanobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_2665617_4	985054.JQEZ01000001_gene2037	2.389e-12	73.0	2EB33@1|root,3353V@2|Bacteria,1NAMU@1224|Proteobacteria,2UIP7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2665617_3	1131814.JAFO01000001_gene135	4.201e-48	178.0	COG3193@1|root,COG3193@2|Bacteria,1N5FP@1224|Proteobacteria,2UDMC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Haem-degrading	-	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
DYD3_k127_2665617_1	886293.Sinac_0035	3.42e-65	229.0	COG5516@1|root,COG5516@2|Bacteria,2J2SS@203682|Planctomycetes	203682|Planctomycetes	S	Putative stress-induced transcription regulator	-	-	-	-	-	-	-	-	-	-	-	-	ABATE,zf-CGNR
DYD3_k127_2665617_0	999541.bgla_2g29370	1.109e-134	437.0	COG2267@1|root,COG2267@2|Bacteria,1QUW0@1224|Proteobacteria,2WHM1@28216|Betaproteobacteria	28216|Betaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_26669_4	402881.Plav_2144	0.0001425	47.0	COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,2TRKY@28211|Alphaproteobacteria,1JMZ6@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP	purA	GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.4.4	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	M00049	R01135	RC00458,RC00459	ko00000,ko00001,ko00002,ko01000	-	-	-	Adenylsucc_synt
DYD3_k127_26669_0	1380394.JADL01000004_gene6022	4.701e-211	662.0	COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,2TRKY@28211|Alphaproteobacteria,2JPN1@204441|Rhodospirillales	204441|Rhodospirillales	F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP	purA	-	6.3.4.4	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	M00049	R01135	RC00458,RC00459	ko00000,ko00001,ko00002,ko01000	-	-	-	Adenylsucc_synt
DYD3_k127_26669_1	1089552.KI911559_gene1483	8.36e-117	387.0	COG3705@1|root,COG3705@2|Bacteria,1MWIG@1224|Proteobacteria,2TSVG@28211|Alphaproteobacteria,2JQ2B@204441|Rhodospirillales	204441|Rhodospirillales	E	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine	hisZ	-	-	ko:K02502	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01071	RC02819,RC03200	ko00000,ko00001,ko00002	-	-	-	tRNA-synt_His
DYD3_k127_26669_3	391937.NA2_19993	2.376e-14	82.0	COG3514@1|root,COG3514@2|Bacteria,1NGCR@1224|Proteobacteria,2UMMQ@28211|Alphaproteobacteria,43MHX@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	BrnA antitoxin of type II toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	BrnA_antitoxin
DYD3_k127_26669_2	452637.Oter_3166	1.285e-48	177.0	28H52@1|root,2Z7HQ@2|Bacteria	2|Bacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_2667473_12	1110502.TMO_1286	7.14e-64	229.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2JV4X@204441|Rhodospirillales	204441|Rhodospirillales	IQ	AMP-binding enzyme C-terminal domain	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_2667473_10	392499.Swit_1048	3.146e-80	289.0	COG1262@1|root,COG1262@2|Bacteria,1MZ25@1224|Proteobacteria,2TRJH@28211|Alphaproteobacteria,2K020@204457|Sphingomonadales	204457|Sphingomonadales	S	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase
DYD3_k127_2667473_0	69395.JQLZ01000002_gene1253	1.827e-306	959.0	COG3119@1|root,COG3119@2|Bacteria,1MV92@1224|Proteobacteria,2TTXG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Arylsulfatase	-	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
DYD3_k127_2667473_7	402881.Plav_2013	5.917e-114	378.0	COG0625@1|root,COG0625@2|Bacteria,1R696@1224|Proteobacteria,2U201@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N_3
DYD3_k127_2667473_17	377629.TERTU_3785	6.237e-52	190.0	COG1225@1|root,COG1225@2|Bacteria,1Q5MJ@1224|Proteobacteria,1RVVU@1236|Gammaproteobacteria,2PQJ3@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	O	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2667473_13	1380394.JADL01000001_gene2324	1.722e-62	242.0	COG2911@1|root,COG2911@2|Bacteria,1N08J@1224|Proteobacteria,2UE2C@28211|Alphaproteobacteria,2JS6H@204441|Rhodospirillales	204441|Rhodospirillales	S	Dicarboxylate transport	-	-	-	-	-	-	-	-	-	-	-	-	DctA-YdbH
DYD3_k127_2667473_23	1380394.JADL01000001_gene2326	9.353e-26	111.0	COG3784@1|root,COG3784@2|Bacteria,1Q09X@1224|Proteobacteria,2UIQS@28211|Alphaproteobacteria,2JUMG@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1318)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1318
DYD3_k127_2667473_9	331869.BAL199_16178	5.763e-95	316.0	COG1309@1|root,COG1309@2|Bacteria,1MUUY@1224|Proteobacteria,2TUIH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	MA20_04045	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
DYD3_k127_2667473_19	331869.BAL199_16183	8.629e-39	149.0	2AS6X@1|root,31HJW@2|Bacteria,1RGYJ@1224|Proteobacteria,2U9UH@28211|Alphaproteobacteria,4BSS4@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2852)	MA20_04040	-	-	-	-	-	-	-	-	-	-	-	DUF2852
DYD3_k127_2667473_11	1049564.TevJSym_af00930	3.518e-72	269.0	COG1639@1|root,COG2204@1|root,COG1639@2|Bacteria,COG2204@2|Bacteria,1RCW6@1224|Proteobacteria,1S3XV@1236|Gammaproteobacteria,1J6BK@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	T	HDOD domain	-	-	-	-	-	-	-	-	-	-	-	-	HDOD,Response_reg
DYD3_k127_2667473_1	269796.Rru_A0690	1.299e-228	738.0	COG3287@1|root,COG3829@1|root,COG4191@1|root,COG3287@2|Bacteria,COG3829@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,2JQQV@204441|Rhodospirillales	204441|Rhodospirillales	T	Signal transduction histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,PAS,PAS_4,PAS_7,PAS_9
DYD3_k127_2667473_25	1121028.ARQE01000001_gene3660	8.479e-10	70.0	COG0745@1|root,COG0745@2|Bacteria,1RDNP@1224|Proteobacteria,2U7BP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	Response regulator receiver	cheY2	GO:0008150,GO:0043900,GO:0043902,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:1900190,GO:1900192	-	ko:K03413	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko02022,ko02035	-	-	-	Response_reg
DYD3_k127_2667473_15	266835.14021200	8.136e-59	222.0	COG4339@1|root,COG4339@2|Bacteria,1MZ9X@1224|Proteobacteria,2U3NC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2667473_3	1280947.HY30_07185	2.558e-199	628.0	COG2124@1|root,COG2124@2|Bacteria	2|Bacteria	Q	cytochrome p450	ahpG	-	-	-	-	-	-	-	-	-	-	-	p450
DYD3_k127_2667473_16	1121949.AQXT01000002_gene2159	1.076e-53	196.0	COG1309@1|root,COG1309@2|Bacteria,1R52P@1224|Proteobacteria,2UDA0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR,TetR_N
DYD3_k127_2667473_8	1333998.M2A_0597	2.67e-100	338.0	COG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,2TR0M@28211|Alphaproteobacteria,4BQ8Z@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group	ctaA	-	-	ko:K02259	ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714	M00154	R07412	RC00769	ko00000,ko00001,ko00002,ko03029	3.D.4.4	-	-	COX15-CtaA
DYD3_k127_2667473_5	331869.BAL199_25634	4.085e-122	404.0	COG0477@1|root,COG2814@2|Bacteria,1QW9T@1224|Proteobacteria,2TY4I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_2667473_2	1168059.KB899087_gene644	5.776e-200	632.0	COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,2TQW9@28211|Alphaproteobacteria,3EYZ5@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	PFAM Cys Met metabolism pyridoxal-phosphate-dependent protein	metY	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.5.1.47,2.5.1.49	ko:K01738,ko:K01740	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R01287,R03601,R04859	RC00020,RC02814,RC02821,RC02848	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
DYD3_k127_2667473_18	1336249.JADW01000001_gene1686	1.756e-48	177.0	COG1832@1|root,COG1832@2|Bacteria,1N03D@1224|Proteobacteria,2TUIY@28211|Alphaproteobacteria,4BE32@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	CoA-binding protein	yccU	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	ko:K06929	-	-	-	-	ko00000	-	-	-	CoA_binding_2
DYD3_k127_2667473_21	1121861.KB899911_gene1216	3.503e-35	152.0	COG4676@1|root,COG4676@2|Bacteria,1QZR6@1224|Proteobacteria,2U6DK@28211|Alphaproteobacteria,2JYGK@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2667473_20	1297569.MESS2_730258	8.463e-38	157.0	COG1651@1|root,COG1651@2|Bacteria,1MY3H@1224|Proteobacteria,2TTXR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Dsba oxidoreductase	dsbA	-	-	-	-	-	-	-	-	-	-	-	DSBA,Thioredoxin_4
DYD3_k127_2667473_14	1121033.AUCF01000013_gene1656	9.432e-62	223.0	COG1651@1|root,COG1651@2|Bacteria,1MY3H@1224|Proteobacteria,2TTXR@28211|Alphaproteobacteria,2JS48@204441|Rhodospirillales	204441|Rhodospirillales	O	Thioredoxin	-	-	-	-	-	-	-	-	-	-	-	-	DSBA,Thioredoxin_4
DYD3_k127_2667473_6	1316936.K678_12706	3.797e-118	395.0	COG4783@1|root,COG4783@2|Bacteria,1MVFV@1224|Proteobacteria,2TTV2@28211|Alphaproteobacteria,2JP90@204441|Rhodospirillales	204441|Rhodospirillales	S	Zn-dependent protease, contains TPR repeats	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48,TPR_16
DYD3_k127_2667473_4	1040986.ATYO01000015_gene612	2.997e-176	589.0	COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,2TRX2@28211|Alphaproteobacteria,43IZG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	J	Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs	rne	-	3.1.26.12	ko:K08300	ko03018,map03018	M00394	-	-	ko00000,ko00001,ko00002,ko01000,ko03009,ko03019	-	-	-	RNase_E_G,S1
DYD3_k127_2667473_22	1037409.BJ6T_55070	1.197e-27	129.0	2BT1Y@1|root,32N69@2|Bacteria,1R9BE@1224|Proteobacteria,2U1H7@28211|Alphaproteobacteria,3JWFK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2687266_12	1333998.M2A_0188	2.108e-28	118.0	COG0352@1|root,COG0352@2|Bacteria,1MZ0K@1224|Proteobacteria,2UA7U@28211|Alphaproteobacteria,4BT9T@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Thiamine monophosphate synthase	-	-	2.5.1.3	ko:K00788	ko00730,ko01100,map00730,map01100	M00127	R03223,R10712	RC00224,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000	-	-	-	TMP-TENI
DYD3_k127_2687266_6	1238182.C882_2151	2.391e-64	222.0	COG2947@1|root,COG2947@2|Bacteria,1RHRU@1224|Proteobacteria,2U71N@28211|Alphaproteobacteria,2JSDI@204441|Rhodospirillales	204441|Rhodospirillales	S	EVE domain	-	-	-	-	-	-	-	-	-	-	-	-	EVE
DYD3_k127_2687266_13	1122132.AQYH01000007_gene1827	1.031e-27	118.0	COG2350@1|root,COG2350@2|Bacteria,1MZ9Z@1224|Proteobacteria,2UF4X@28211|Alphaproteobacteria,4BFAX@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the	yciI	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	ko:K09780	-	-	-	-	ko00000	-	-	-	YCII
DYD3_k127_2687266_8	1282876.BAOK01000002_gene301	4.822e-58	208.0	COG1309@1|root,COG1309@2|Bacteria,1N71J@1224|Proteobacteria,2UHJN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2687266_14	1301098.PKB_0052	9.888e-21	96.0	COG3553@1|root,COG3553@2|Bacteria,1N757@1224|Proteobacteria	1224|Proteobacteria	K	Protein conserved in bacteria	-	-	-	ko:K09956	-	-	-	-	ko00000	-	-	-	DUF2218
DYD3_k127_2687266_7	1380394.JADL01000008_gene3617	2.119e-59	212.0	COG1695@1|root,COG1695@2|Bacteria,1RHSE@1224|Proteobacteria,2U1HF@28211|Alphaproteobacteria,2JTRG@204441|Rhodospirillales	204441|Rhodospirillales	K	Transcriptional regulator PadR-like family	-	-	-	-	-	-	-	-	-	-	-	-	PadR
DYD3_k127_2687266_2	1110502.TMO_0512	3.361e-137	448.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,2JR74@204441|Rhodospirillales	204441|Rhodospirillales	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
DYD3_k127_2687266_9	460265.Mnod_4768	1.081e-50	183.0	COG1186@1|root,COG1186@2|Bacteria,1RH75@1224|Proteobacteria,2U9M7@28211|Alphaproteobacteria,1JUJ6@119045|Methylobacteriaceae	28211|Alphaproteobacteria	J	Class I peptide chain release factor	MA20_05665	GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112	-	ko:K15034	-	-	-	-	ko00000,ko03012	-	-	-	RF-1
DYD3_k127_2687266_0	1336208.JADY01000001_gene1160	4.011e-180	573.0	COG2081@1|root,COG2081@2|Bacteria,1MUGC@1224|Proteobacteria,2TTXA@28211|Alphaproteobacteria,2JP9F@204441|Rhodospirillales	204441|Rhodospirillales	S	HI0933-like protein	-	-	-	ko:K07007	-	-	-	-	ko00000	-	-	-	HI0933_like
DYD3_k127_2687266_3	1110502.TMO_2054	6.226e-120	410.0	COG4625@1|root,COG4625@2|Bacteria,1R48D@1224|Proteobacteria	1224|Proteobacteria	P	Hep Hag repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,VPEP
DYD3_k127_2687266_10	1220535.IMCC14465_04560	5.283e-43	162.0	2DKWE@1|root,30KTR@2|Bacteria,1RFMV@1224|Proteobacteria,2UMW3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_2687266_5	40571.JOEA01000004_gene6389	4.331e-75	260.0	COG1028@1|root,COG1028@2|Bacteria,2GMAG@201174|Actinobacteria,4E17Z@85010|Pseudonocardiales	201174|Actinobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_2687266_4	1123023.JIAI01000013_gene3881	2.946e-110	369.0	2DBBP@1|root,2Z88Z@2|Bacteria,2I46Q@201174|Actinobacteria,4EFBN@85010|Pseudonocardiales	201174|Actinobacteria	S	Sulfotransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_3
DYD3_k127_2687266_1	585531.HMPREF0063_12496	1.998e-154	496.0	COG5361@1|root,COG5361@2|Bacteria,2HES3@201174|Actinobacteria,4DQ0V@85009|Propionibacteriales	201174|Actinobacteria	S	Conserved Protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1214
DYD3_k127_2687266_16	1054213.HMPREF9946_04939	9.836e-06	57.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
DYD3_k127_2687266_15	627192.SLG_25060	9.831e-10	69.0	COG1309@1|root,COG1309@2|Bacteria,1RIG0@1224|Proteobacteria,2VFM1@28211|Alphaproteobacteria,2KA9F@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2687266_11	66874.JOFS01000012_gene4720	7.899e-38	157.0	COG1605@1|root,COG1605@2|Bacteria,2IQ46@201174|Actinobacteria	201174|Actinobacteria	E	Chorismate mutase	tyrA	-	5.4.99.5	ko:K04092	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024,M00025	R01715	RC03116	ko00000,ko00001,ko00002,ko01000	-	-	-	CM_2
DYD3_k127_2690242_4	639283.Snov_2418	2.427e-113	373.0	COG2197@1|root,COG2199@1|root,COG2197@2|Bacteria,COG3706@2|Bacteria,1MVNV@1224|Proteobacteria,2TTK7@28211|Alphaproteobacteria,3EYE1@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	MA20_23080	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_2690242_0	639283.Snov_2419	0.0	1436.0	COG0642@1|root,COG0745@1|root,COG1457@1|root,COG0745@2|Bacteria,COG1457@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TQWE@28211|Alphaproteobacteria,3EZ1Q@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	MA20_23075	-	-	ko:K20971	ko02025,map02025	-	-	-	ko00000,ko00001,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS_3,Response_reg
DYD3_k127_2690242_1	1429916.X566_02905	3.542e-240	746.0	COG0683@1|root,COG0683@2|Bacteria,1MU8V@1224|Proteobacteria,2TS3I@28211|Alphaproteobacteria,3JRX8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_23070	-	-	ko:K11959	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	Peripla_BP_5
DYD3_k127_2690242_3	1168059.KB899087_gene492	6.504e-151	481.0	COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2TRMA@28211|Alphaproteobacteria,3EXUR@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_23065	-	-	ko:K11960	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
DYD3_k127_2690242_2	1122214.AQWH01000035_gene19	2.618e-172	548.0	COG4177@1|root,COG4177@2|Bacteria,1MUPI@1224|Proteobacteria,2TTN2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K11961	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
DYD3_k127_2690242_5	1125973.JNLC01000012_gene775	4.586e-108	353.0	COG4674@1|root,COG4674@2|Bacteria,1MUBR@1224|Proteobacteria,2TQVJ@28211|Alphaproteobacteria,3JSTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter, ATP-binding protein	MA20_23055	-	-	ko:K11962	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran,BCA_ABC_TP_C
DYD3_k127_2739985_10	1380394.JADL01000001_gene2403	5.926e-09	66.0	COG0535@1|root,COG0535@2|Bacteria,1N7TR@1224|Proteobacteria,2UFAS@28211|Alphaproteobacteria,2JUQB@204441|Rhodospirillales	204441|Rhodospirillales	S	Coenzyme PQQ synthesis protein D (PqqD)	pqqD	-	-	ko:K06138	-	-	-	-	ko00000	-	-	-	PqqD
DYD3_k127_2739985_8	1244869.H261_06756	1.065e-19	101.0	COG0822@1|root,COG0822@2|Bacteria,1Q35V@1224|Proteobacteria,2VA5R@28211|Alphaproteobacteria,2JU10@204441|Rhodospirillales	204441|Rhodospirillales	C	NifU-like N terminal domain	-	-	-	ko:K04488	-	-	-	-	ko00000	-	-	-	NifU_N
DYD3_k127_2739985_2	1205680.CAKO01000008_gene4191	5.489e-137	454.0	COG0520@1|root,COG0520@2|Bacteria,1MUPD@1224|Proteobacteria,2TRNY@28211|Alphaproteobacteria,2JPRG@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine	sufS	-	2.8.1.7,4.4.1.16	ko:K11717	ko00450,ko01100,map00450,map01100	-	R03599,R11528	RC00961,RC01789,RC02313	ko00000,ko00001,ko01000	-	-	-	Aminotran_5
DYD3_k127_2739985_1	402881.Plav_2955	2.011e-155	511.0	COG0303@1|root,COG2068@1|root,COG0303@2|Bacteria,COG2068@2|Bacteria,1MW0X@1224|Proteobacteria,2TR5D@28211|Alphaproteobacteria,1JNFS@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	Probable molybdopterin binding domain	MA20_09420	-	2.7.7.76	ko:K07141	ko00790,map00790	-	R11582	-	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,NTP_transf_3
DYD3_k127_2739985_4	1231392.OCGS_0773	8.123e-94	318.0	COG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,2TUF3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family	MA20_09415	-	-	ko:K07402	-	-	-	-	ko00000	-	-	-	XdhC_C,XdhC_CoxI
DYD3_k127_2739985_3	1380394.JADL01000011_gene3987	3.363e-103	344.0	COG1319@1|root,COG1319@2|Bacteria,1MUDB@1224|Proteobacteria,2TRA8@28211|Alphaproteobacteria,2JQRH@204441|Rhodospirillales	204441|Rhodospirillales	C	CO dehydrogenase flavoprotein C-terminal domain	-	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
DYD3_k127_2739985_0	1038858.AXBA01000011_gene1576	0.0	1129.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3F0QB@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	coxL	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
DYD3_k127_2739985_6	1121033.AUCF01000029_gene326	1.557e-74	253.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U5BM@28211|Alphaproteobacteria,2JS2Q@204441|Rhodospirillales	204441|Rhodospirillales	C	[2Fe-2S] binding domain	-	-	1.2.5.3	ko:K03518	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Fer2,Fer2_2
DYD3_k127_2739985_7	1380391.JIAS01000017_gene576	1.163e-54	210.0	COG3427@1|root,COG3427@2|Bacteria,1RHUC@1224|Proteobacteria,2U9HD@28211|Alphaproteobacteria,2JSQF@204441|Rhodospirillales	204441|Rhodospirillales	S	Carbon monoxide dehydrogenase subunit G (CoxG)	-	-	-	ko:K09386	-	-	-	-	ko00000	-	-	-	COXG
DYD3_k127_2739985_5	426355.Mrad2831_4122	7.081e-75	258.0	COG0500@1|root,COG2226@2|Bacteria,1PFX0@1224|Proteobacteria,2V19Z@28211|Alphaproteobacteria,1JWVP@119045|Methylobacteriaceae	28211|Alphaproteobacteria	H	Methyltransferase type 12	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_2739985_11	1187851.A33M_4371	1.032e-05	50.0	2EKGF@1|root,33AIN@2|Bacteria,1NI2N@1224|Proteobacteria,2UMSW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1902)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1902
DYD3_k127_2739985_9	652103.Rpdx1_4159	2.417e-19	89.0	2E3J6@1|root,32YHK@2|Bacteria,1NEFW@1224|Proteobacteria,2UKBP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	HicA toxin of bacterial toxin-antitoxin,	-	-	-	-	-	-	-	-	-	-	-	-	HicA_toxin
DYD3_k127_2743970_4	1297569.MESS2_800020	1.792e-39	149.0	COG2197@1|root,COG2197@2|Bacteria,1MXYY@1224|Proteobacteria,2U6NN@28211|Alphaproteobacteria,43PXG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	ko:K07782	ko02020,ko02024,ko02026,map02020,map02024,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	Autoind_bind,GerE
DYD3_k127_2743970_0	1297570.MESS4_830144	1.712e-289	896.0	COG0747@1|root,COG0747@2|Bacteria,1R6Z4@1224|Proteobacteria,2TUSS@28211|Alphaproteobacteria,43R3A@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
DYD3_k127_2743970_2	1297570.MESS4_830142	5.414e-156	498.0	COG1173@1|root,COG1173@2|Bacteria,1MU26@1224|Proteobacteria,2U2UH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
DYD3_k127_2743970_1	1297570.MESS4_830141	6.251e-165	534.0	COG0601@1|root,COG0601@2|Bacteria,1MXCF@1224|Proteobacteria,2TVBN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EP	transporter permease	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_2743970_3	1380350.JIAP01000012_gene445	4.247e-115	378.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_2746508_8	1122132.AQYH01000004_gene1662	2.869e-165	535.0	COG2379@1|root,COG2379@2|Bacteria,1MVIK@1224|Proteobacteria,2TQJY@28211|Alphaproteobacteria,4B72Z@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	hydroxypyruvate reductase	ttuD	-	2.7.1.165	ko:K11529	ko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01120,map01130,map01200	M00346	R08572	RC00002,RC00428	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF4147,MOFRL
DYD3_k127_2746508_11	1007105.PT7_1169	6.75e-129	420.0	COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2WGFK@28216|Betaproteobacteria,3T2WV@506|Alcaligenaceae	28216|Betaproteobacteria	CH	Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor	hprA	-	1.1.1.29,1.1.1.399,1.1.1.95	ko:K00018,ko:K00058	ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00020,M00346	R00717,R01388,R01513	RC00031,RC00042	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_2746508_6	78245.Xaut_3180	2.542e-188	593.0	2DB9X@1|root,2Z7ZS@2|Bacteria,1N6CK@1224|Proteobacteria,2TUY7@28211|Alphaproteobacteria,3F05D@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3445)	-	-	1.14.13.238	ko:K22342	-	-	-	-	ko00000,ko01000	-	-	-	DUF3445
DYD3_k127_2746508_15	395965.Msil_3608	6.908e-112	374.0	COG1018@1|root,COG1018@2|Bacteria,1MU6E@1224|Proteobacteria,2TRE9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	yeaX	-	1.14.13.238	ko:K21832,ko:K22343	-	-	-	-	ko00000,ko01000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_2746508_18	1131814.JAFO01000001_gene1358	3.595e-51	193.0	28IUB@1|root,2Z8T2@2|Bacteria,1N0PJ@1224|Proteobacteria,2U3CJ@28211|Alphaproteobacteria,3F1XQ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	1.14.13.238	ko:K22344	-	-	-	-	ko00000,ko01000	-	-	-	-
DYD3_k127_2746508_1	1131814.JAFO01000001_gene1360	3.048e-310	973.0	COG0404@1|root,COG3665@1|root,COG0404@2|Bacteria,COG3665@2|Bacteria,1R3WG@1224|Proteobacteria,2TVX2@28211|Alphaproteobacteria,3F0EK@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Domain of unknown function (DUF1989)	-	-	2.1.2.10	ko:K00605	ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200	M00532	R01221,R02300,R04125	RC00022,RC00069,RC00183,RC02834	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF1989,GCV_T,GCV_T_C
DYD3_k127_2746508_2	78245.Xaut_3186	4.368e-266	824.0	COG1960@1|root,COG1960@2|Bacteria,1R5A6@1224|Proteobacteria,2U0HW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_2746508_4	438753.AZC_1377	5.142e-207	647.0	COG0404@1|root,COG0404@2|Bacteria,1N1G4@1224|Proteobacteria,2TS47@28211|Alphaproteobacteria,3F081@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Glycine cleavage T-protein C-terminal barrel domain	-	-	2.1.2.10	ko:K00605	ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200	M00532	R01221,R02300,R04125	RC00022,RC00069,RC00183,RC02834	ko00000,ko00001,ko00002,ko01000	-	-	-	GCV_T,GCV_T_C
DYD3_k127_2746508_3	1120792.JAFV01000001_gene87	4.222e-212	668.0	COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,36X5H@31993|Methylocystaceae	28211|Alphaproteobacteria	P	Ammonium Transporter Family	-	-	-	-	-	-	-	-	-	-	-	-	Ammonium_transp
DYD3_k127_2746508_19	1120792.JAFV01000001_gene86	1.252e-12	69.0	2A5SQ@1|root,30UHY@2|Bacteria,1Q45Z@1224|Proteobacteria,2UM90@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2746508_7	1211115.ALIQ01000215_gene2353	8.175e-166	531.0	COG3748@1|root,COG3748@2|Bacteria,1MWHB@1224|Proteobacteria,2TSXN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	membrane	MA20_17625	-	-	-	-	-	-	-	-	-	-	-	Urate_ox_N
DYD3_k127_2746508_13	1121033.AUCF01000038_gene613	3.438e-116	384.0	COG0583@1|root,COG0583@2|Bacteria,1MVJ7@1224|Proteobacteria,2TT9Z@28211|Alphaproteobacteria,2JW2M@204441|Rhodospirillales	204441|Rhodospirillales	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_2746508_14	1547437.LL06_17670	2.742e-114	390.0	COG0583@1|root,COG0583@2|Bacteria,1MU3N@1224|Proteobacteria,2TTS9@28211|Alphaproteobacteria,43JU7@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_2746508_16	402881.Plav_3119	9.54e-102	336.0	COG0491@1|root,COG0491@2|Bacteria,1MUDN@1224|Proteobacteria,2TQJ9@28211|Alphaproteobacteria,1JNZ9@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	ycbL	GO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_2746508_17	670292.JH26_28500	4.303e-70	244.0	COG2928@1|root,COG2928@2|Bacteria,1MWT5@1224|Proteobacteria,2TZPK@28211|Alphaproteobacteria,1JQRR@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF502)	-	-	-	-	-	-	-	-	-	-	-	-	DUF502
DYD3_k127_2746508_12	1333998.M2A_0794	6.372e-127	417.0	COG1485@1|root,COG1485@2|Bacteria,1MUUW@1224|Proteobacteria,2TRG1@28211|Alphaproteobacteria,4BPU8@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	AFG1-like ATPase	zapE	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0030163,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0035694,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071840,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575	-	ko:K06916	-	-	-	-	ko00000,ko03036	-	-	-	AFG1_ATPase
DYD3_k127_2746508_10	1096546.WYO_1191	1.13e-157	503.0	COG0039@1|root,COG0039@2|Bacteria,1MV57@1224|Proteobacteria,2TSV6@28211|Alphaproteobacteria,1JT64@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	Catalyzes the reversible oxidation of malate to oxaloacetate	mdh	GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	1.1.1.37	ko:K00024	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740	R00342,R07136	RC00031	ko00000,ko00001,ko00002,ko01000	-	-	-	Ldh_1_C,Ldh_1_N
DYD3_k127_2746508_5	1110502.TMO_3008	5.548e-190	600.0	COG0045@1|root,COG0045@2|Bacteria,1MVCE@1224|Proteobacteria,2TRXK@28211|Alphaproteobacteria,2JPG4@204441|Rhodospirillales	204441|Rhodospirillales	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	sucC	-	6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,Ligase_CoA
DYD3_k127_2746508_9	1244869.H261_21878	1.331e-159	515.0	COG0074@1|root,COG0074@2|Bacteria,1MUGA@1224|Proteobacteria,2TQKB@28211|Alphaproteobacteria,2JPJ9@204441|Rhodospirillales	204441|Rhodospirillales	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit	sucD	-	6.2.1.5	ko:K01902	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_binding,Ligase_CoA
DYD3_k127_2746508_0	1333998.M2A_0801	0.0	1176.0	COG0567@1|root,COG0567@2|Bacteria,1MVBF@1224|Proteobacteria,2TRBQ@28211|Alphaproteobacteria,4BPPZ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Dehydrogenase E1 component	sucA	-	1.2.4.2	ko:K00164	ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R00621,R01933,R01940,R03316,R08549	RC00004,RC00027,RC00627,RC02743,RC02833,RC02883	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
DYD3_k127_2756290_3	107635.AZUO01000001_gene287	4.919e-11	64.0	COG4398@1|root,COG4398@2|Bacteria,1MUX9@1224|Proteobacteria,2TUXU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	FIST_C	-	-	-	-	-	-	-	-	-	-	-	-	FIST,FIST_C
DYD3_k127_2756290_0	78245.Xaut_2912	5.489e-114	375.0	COG4398@1|root,COG4398@2|Bacteria,1MUX9@1224|Proteobacteria,2TUXU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	FIST_C	-	-	-	-	-	-	-	-	-	-	-	-	FIST,FIST_C
DYD3_k127_2756290_2	1265313.HRUBRA_02030	9.979e-15	83.0	COG1309@1|root,COG1309@2|Bacteria,1PE2X@1224|Proteobacteria,1THAQ@1236|Gammaproteobacteria,1JBFX@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_2756290_1	1177179.A11A3_06580	2e-105	355.0	COG3119@1|root,COG3119@2|Bacteria,1MV0B@1224|Proteobacteria,1RRY3@1236|Gammaproteobacteria,1XS5U@135619|Oceanospirillales	135619|Oceanospirillales	P	Sulfatase	-	-	3.1.6.6	ko:K01133	-	-	-	-	ko00000,ko01000	-	-	-	Sulfatase
DYD3_k127_2771660_1	1415780.JPOG01000001_gene3280	1.361e-113	372.0	COG1432@1|root,COG1432@2|Bacteria,1MX5C@1224|Proteobacteria,1RSP8@1236|Gammaproteobacteria,1X51U@135614|Xanthomonadales	135614|Xanthomonadales	S	OST-HTH/LOTUS domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN,OST-HTH
DYD3_k127_2771660_2	1127673.GLIP_3753	2.815e-24	103.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,1SCA7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Cold shock	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_2771660_0	706191.PANA_3827	4.521e-119	389.0	COG0115@1|root,COG0115@2|Bacteria,1MVB0@1224|Proteobacteria,1RP6Z@1236|Gammaproteobacteria,3VZN0@53335|Pantoea	1236|Gammaproteobacteria	E	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family	ilvE	GO:0003674,GO:0003824,GO:0004084,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006531,GO:0006532,GO:0006551,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009081,GO:0009082,GO:0009098,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0042802,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.6.1.42	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R10991	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	iB21_1397.B21_03597,iECBD_1354.ECBD_4269,iECB_1328.ECB_03648,iECD_1391.ECD_03648,iECO103_1326.ECO103_4394	Aminotran_4
DYD3_k127_2794737_3	1123355.JHYO01000022_gene30	9.344e-34	143.0	COG2834@1|root,COG2834@2|Bacteria,1MXW0@1224|Proteobacteria,2U3UR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Outer membrane lipoprotein-sorting protein	-	-	-	-	-	-	-	-	-	-	-	-	LolA_like
DYD3_k127_2794737_4	883.DvMF_2639	0.0001807	53.0	28NQG@1|root,2ZBPZ@2|Bacteria,1NVY1@1224|Proteobacteria,42ZXD@68525|delta/epsilon subdivisions,2WVC4@28221|Deltaproteobacteria,2MB16@213115|Desulfovibrionales	28221|Deltaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2794737_1	1122603.ATVI01000005_gene2816	1.276e-79	268.0	COG1546@1|root,COG1546@2|Bacteria,1RHXH@1224|Proteobacteria,1SD0Q@1236|Gammaproteobacteria,1XAG4@135614|Xanthomonadales	135614|Xanthomonadales	S	Competence-damaged protein	-	-	-	-	-	-	-	-	-	-	-	-	CinA
DYD3_k127_2794737_2	1430440.MGMSRv2_3169	8.779e-34	131.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,2JTV9@204441|Rhodospirillales	204441|Rhodospirillales	K	Cold shock	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_2794737_0	1297863.APJF01000008_gene531	1.911e-104	351.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JSR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_09220	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_2794845_4	582899.Hden_1742	1.948e-85	292.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3N88T@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	cusA	-	-	ko:K07787	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4	-	-	ACR_tran
DYD3_k127_2794845_1	1123519.PSJM300_10640	3.655e-111	374.0	COG0845@1|root,COG0845@2|Bacteria,1MVAS@1224|Proteobacteria,1RPBZ@1236|Gammaproteobacteria,1YZQQ@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	cebB	-	-	ko:K07798	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4,8.A.1	-	-	HlyD_D23,HlyD_D4
DYD3_k127_2794845_5	1205680.CAKO01000038_gene1793	6.797e-68	239.0	COG2353@1|root,COG2353@2|Bacteria,1R9XD@1224|Proteobacteria,2TVD3@28211|Alphaproteobacteria,2JTHR@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the UPF0312 family	-	-	-	-	-	-	-	-	-	-	-	-	YceI
DYD3_k127_2794845_6	1144319.PMI16_02809	3.348e-62	218.0	COG3832@1|root,COG3832@2|Bacteria,1RI7Y@1224|Proteobacteria,2VW09@28216|Betaproteobacteria	28216|Betaproteobacteria	O	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_2794845_7	63737.Npun_R2128	1.303e-54	194.0	COG2764@1|root,COG2764@2|Bacteria,1G76J@1117|Cyanobacteria,1HS99@1161|Nostocales	1117|Cyanobacteria	S	3-demethylubiquinone-9 3-methyltransferase	-	-	-	ko:K04750	-	-	-	-	ko00000	-	-	-	3-dmu-9_3-mt
DYD3_k127_2794845_8	1192868.CAIU01000021_gene3077	1.134e-49	184.0	COG0640@1|root,COG0640@2|Bacteria,1RH5P@1224|Proteobacteria,2U960@28211|Alphaproteobacteria,43KDS@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
DYD3_k127_2794845_0	1403819.BATR01000124_gene4413	1.182e-111	368.0	COG4312@1|root,COG4312@2|Bacteria	2|Bacteria	S	Bacterial protein of unknown function (DUF899)	-	-	-	-	-	-	-	-	-	-	-	-	DUF899
DYD3_k127_2794845_10	1038860.AXAP01000157_gene8659	8.419e-05	48.0	2BUDZ@1|root,32PPY@2|Bacteria,1MYIA@1224|Proteobacteria,2UAHZ@28211|Alphaproteobacteria,3JZMW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2794845_3	269796.Rru_A3010	9.856e-106	355.0	COG1349@1|root,COG1349@2|Bacteria,1MUJG@1224|Proteobacteria,2U0QH@28211|Alphaproteobacteria,2JZMV@204441|Rhodospirillales	204441|Rhodospirillales	K	DeoR C terminal sensor domain	-	-	-	-	-	-	-	-	-	-	-	-	DeoRC,HTH_DeoR
DYD3_k127_2794845_2	1380391.JIAS01000011_gene4647	1.952e-109	376.0	COG0371@1|root,COG0371@2|Bacteria,1NAAM@1224|Proteobacteria,2TRFG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	egsA	-	1.1.1.261	ko:K00096	ko00564,map00564	-	R05679,R05680	RC00029	ko00000,ko00001,ko01000	-	-	-	Fe-ADH_2
DYD3_k127_2794845_9	1287276.X752_01795	1.413e-41	158.0	COG1070@1|root,COG1070@2|Bacteria,1MW4A@1224|Proteobacteria,2TR7P@28211|Alphaproteobacteria,43IKB@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	G	Xylulose kinase	-	-	-	-	-	-	-	-	-	-	-	-	FGGY_C,FGGY_N
DYD3_k127_2799815_2	391593.RCCS2_04199	5.597e-44	172.0	COG0176@1|root,COG0176@2|Bacteria,1MWQ8@1224|Proteobacteria,2TQJB@28211|Alphaproteobacteria,2P2BQ@2433|Roseobacter	28211|Alphaproteobacteria	F	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD3_k127_2799815_1	1028801.RG1141_CH25960	1.707e-63	221.0	COG1846@1|root,COG1846@2|Bacteria,1RH1F@1224|Proteobacteria,2U7KI@28211|Alphaproteobacteria,4BEN4@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR
DYD3_k127_2799815_0	311403.Arad_8698	2.099e-178	562.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,4B8SH@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_2803192_3	1122135.KB893170_gene2779	1.067e-68	240.0	COG1511@1|root,COG1511@2|Bacteria,1NYJB@1224|Proteobacteria,2TSX0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	MotA TolQ ExbB proton channel family	MA20_18055	-	-	-	-	-	-	-	-	-	-	-	MotA_ExbB
DYD3_k127_2803192_1	414684.RC1_1826	5.372e-110	366.0	COG1360@1|root,COG1360@2|Bacteria,1MU4S@1224|Proteobacteria,2TQKZ@28211|Alphaproteobacteria,2JPRZ@204441|Rhodospirillales	204441|Rhodospirillales	N	flagellar motor protein	-	-	-	ko:K02557	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	OmpA
DYD3_k127_2803192_2	1430440.MGMSRv2_0919	9.697e-76	260.0	COG3820@1|root,COG3820@2|Bacteria,1MVR2@1224|Proteobacteria,2TT8Z@28211|Alphaproteobacteria,2JRSY@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	ko:K09987	-	-	-	-	ko00000	-	-	-	DUF1013
DYD3_k127_2803192_0	1125973.JNLC01000013_gene3867	6.348e-130	422.0	COG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2TR1J@28211|Alphaproteobacteria,3JQP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NAD(P)H quinone oxidoreductase	MA20_18095	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_2803192_7	504832.OCAR_7323	7.043e-08	56.0	COG5509@1|root,COG5509@2|Bacteria,1NG8P@1224|Proteobacteria,2UJB2@28211|Alphaproteobacteria,3K0WS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1192)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1192
DYD3_k127_2803192_4	1380394.JADL01000003_gene5019	9.15e-55	198.0	COG0071@1|root,COG0071@2|Bacteria,1RH2X@1224|Proteobacteria,2U96D@28211|Alphaproteobacteria,2JT07@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the small heat shock protein (HSP20) family	-	-	-	ko:K04080	-	-	-	-	ko00000,ko03110	-	-	-	HSP20
DYD3_k127_2803192_6	1123240.ATVO01000003_gene367	6.82e-13	68.0	COG0254@1|root,COG0254@2|Bacteria,1MZ69@1224|Proteobacteria,2UBSC@28211|Alphaproteobacteria,2K643@204457|Sphingomonadales	204457|Sphingomonadales	J	50S ribosomal protein L31	rpmE	-	-	ko:K02909	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L31
DYD3_k127_2819190_2	323848.Nmul_A2047	5.488e-13	79.0	299BN@1|root,30IIP@2|Bacteria,1PWQK@1224|Proteobacteria,2WC97@28216|Betaproteobacteria,374GZ@32003|Nitrosomonadales	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2819190_1	1380394.JADL01000006_gene5319	2.256e-60	222.0	COG1192@1|root,COG1192@2|Bacteria,1MWRE@1224|Proteobacteria,2TSJZ@28211|Alphaproteobacteria,2JRRK@204441|Rhodospirillales	204441|Rhodospirillales	D	VirC1 protein	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31,CbiA
DYD3_k127_2819190_0	450851.PHZ_c0447	3.859e-62	231.0	COG3191@1|root,COG3191@2|Bacteria,1MWDP@1224|Proteobacteria,2TRDC@28211|Alphaproteobacteria,2KFJX@204458|Caulobacterales	204458|Caulobacterales	EQ	Peptidase family S58	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S58
DYD3_k127_2832879_2	1449049.JONW01000005_gene1781	3.834e-77	260.0	COG1720@1|root,COG1720@2|Bacteria,1MUF0@1224|Proteobacteria,2TVD8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterised protein family UPF0066	-	-	-	-	-	-	-	-	-	-	-	-	UPF0066
DYD3_k127_2832879_1	342113.DM82_274	2.793e-95	323.0	COG1893@1|root,COG1893@2|Bacteria,1N0M5@1224|Proteobacteria,2VMSA@28216|Betaproteobacteria,1K55B@119060|Burkholderiaceae	28216|Betaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	-	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
DYD3_k127_2832879_0	1336235.JAEG01000006_gene910	3.381e-220	691.0	COG0446@1|root,COG1902@1|root,COG0446@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TZTW@28211|Alphaproteobacteria,4BBI0@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	tmd	-	1.5.8.1,1.5.8.2	ko:K00317	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R01588,R02511	RC00185,RC00556,RC00557,RC00732	ko00000,ko00001,ko01000	-	-	-	NAD_binding_8,Oxidored_FMN,Pyr_redox_2
DYD3_k127_2833896_0	1096930.L284_23055	1.538e-264	821.0	COG0129@1|root,COG0129@2|Bacteria,1MUTQ@1224|Proteobacteria,2TRTQ@28211|Alphaproteobacteria,2K026@204457|Sphingomonadales	204457|Sphingomonadales	EG	Belongs to the IlvD Edd family	ilvD	-	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
DYD3_k127_2833896_2	331869.BAL199_27736	1.203e-17	90.0	COG3773@1|root,COG3773@2|Bacteria	2|Bacteria	M	sporulation resulting in formation of a cellular spore	cwlJ	-	3.5.1.28	ko:K01449	-	-	R04112	RC00064,RC00141	ko00000,ko01000	-	-	-	Hydrolase_2
DYD3_k127_2833896_1	1207063.P24_15616	1.81e-109	375.0	COG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2TRJ1@28211|Alphaproteobacteria,2JQGE@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Sugar (and other) transporter	-	-	-	ko:K07552	-	-	-	-	ko00000,ko02000	2.A.1.2	-	-	MFS_1
DYD3_k127_2859213_12	118163.Ple7327_2787	1.646e-38	153.0	COG0797@1|root,COG0797@2|Bacteria,1G0XF@1117|Cyanobacteria,3VKBR@52604|Pleurocapsales	1117|Cyanobacteria	M	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	rlpA	-	-	ko:K03642	-	-	-	-	ko00000	-	-	-	DPBB_1
DYD3_k127_2859213_0	1120956.JHZK01000004_gene1443	3.124e-205	655.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TR49@28211|Alphaproteobacteria,1JND8@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Gamma-glutamyltranspeptidase	ggt	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
DYD3_k127_2859213_1	1123257.AUFV01000011_gene3078	5.277e-167	538.0	COG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,1RQJX@1236|Gammaproteobacteria,1X3CA@135614|Xanthomonadales	135614|Xanthomonadales	Q	Protein of unknown function (DUF1298)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1298,WES_acyltransf
DYD3_k127_2859213_8	438753.AZC_1190	2.251e-80	278.0	COG0030@1|root,COG0030@2|Bacteria,1R4E5@1224|Proteobacteria,2U55D@28211|Alphaproteobacteria,3EZ7M@335928|Xanthobacteraceae	28211|Alphaproteobacteria	J	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
DYD3_k127_2859213_10	1150626.PHAMO_40124	8.23e-55	206.0	COG2885@1|root,COG3637@1|root,COG2885@2|Bacteria,COG3637@2|Bacteria,1N6EM@1224|Proteobacteria,2U17R@28211|Alphaproteobacteria,2JS5S@204441|Rhodospirillales	204441|Rhodospirillales	M	COG3637 Opacity protein and related surface antigens	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl,OmpA
DYD3_k127_2859213_13	78245.Xaut_1962	1.524e-16	85.0	2ERGX@1|root,33J2F@2|Bacteria,1NN80@1224|Proteobacteria,2UNFC@28211|Alphaproteobacteria,3F01D@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2859213_11	1110502.TMO_0667	1.606e-41	164.0	COG4122@1|root,COG4122@2|Bacteria,1PHC0@1224|Proteobacteria,2V858@28211|Alphaproteobacteria,2JUBB@204441|Rhodospirillales	204441|Rhodospirillales	M	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24
DYD3_k127_2859213_3	1110502.TMO_1739	1.012e-124	414.0	COG1086@1|root,COG2148@1|root,COG1086@2|Bacteria,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2TRZA@28211|Alphaproteobacteria,2JQVQ@204441|Rhodospirillales	204441|Rhodospirillales	M	COG2148 Sugar transferases involved in lipopolysaccharide synthesis	wcaJ	-	-	ko:K03606,ko:K20997	ko02025,ko05111,map02025,map05111	-	-	-	ko00000,ko00001	-	-	-	Bac_transf,CoA_binding_3
DYD3_k127_2859213_5	639283.Snov_2234	3.89e-89	304.0	COG3325@1|root,COG3325@2|Bacteria,1RDU4@1224|Proteobacteria,2U7YE@28211|Alphaproteobacteria,3EY5U@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Glycosyl hydrolases family 18	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_18
DYD3_k127_2859213_6	639283.Snov_2235	5.614e-88	299.0	COG2265@1|root,COG2265@2|Bacteria	2|Bacteria	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family	rsmJ	-	2.1.1.11,2.1.1.242	ko:K03428,ko:K07003,ko:K15984	ko00860,ko01100,ko01110,map00860,map01100,map01110	-	R04237	RC00003,RC00460	ko00000,ko00001,ko01000,ko03009	-	-	-	Methyltransf_21,Methyltransf_25,Methyltransf_31,SAM_MT,rRNA_methylase
DYD3_k127_2859213_4	438753.AZC_4420	4.308e-101	348.0	28HQV@1|root,2Z7YE@2|Bacteria,1R9JG@1224|Proteobacteria,2U1N1@28211|Alphaproteobacteria,3EZ5X@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2859213_7	1207063.P24_06122	3.573e-84	293.0	COG1922@1|root,COG1922@2|Bacteria,1N1HD@1224|Proteobacteria,2TSBS@28211|Alphaproteobacteria,2JSH7@204441|Rhodospirillales	204441|Rhodospirillales	M	Glycosyl transferase WecB/TagA/CpsF family	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tran_WecB
DYD3_k127_2859213_9	1123072.AUDH01000021_gene2028	1.003e-55	207.0	COG1596@1|root,COG1596@2|Bacteria,1RDXY@1224|Proteobacteria,2U7HK@28211|Alphaproteobacteria,2JSJB@204441|Rhodospirillales	204441|Rhodospirillales	M	Polysaccharide biosynthesis/export protein	-	-	-	-	-	-	-	-	-	-	-	-	Poly_export,SLBB
DYD3_k127_2859213_2	78245.Xaut_1960	7.76e-132	447.0	COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,1R7T2@1224|Proteobacteria,2U3TS@28211|Alphaproteobacteria,3EXXM@335928|Xanthobacteraceae	28211|Alphaproteobacteria	M	PFAM lipopolysaccharide biosynthesis	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_28627_3	1380391.JIAS01000001_gene2749	3.421e-56	204.0	COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2TU60@28211|Alphaproteobacteria,2JT6B@204441|Rhodospirillales	204441|Rhodospirillales	F	Glutamine amidotransferase class-I	-	-	-	-	-	-	-	-	-	-	-	-	GATase
DYD3_k127_28627_1	1205680.CAKO01000002_gene3115	2.332e-115	384.0	COG0330@1|root,COG0330@2|Bacteria,1MUM8@1224|Proteobacteria,2TRUY@28211|Alphaproteobacteria,2JPF8@204441|Rhodospirillales	204441|Rhodospirillales	O	prohibitin homologues	-	-	-	-	-	-	-	-	-	-	-	-	Band_7,Band_7_C
DYD3_k127_28627_5	1123020.AUIE01000002_gene1379	1.534e-21	102.0	COG1585@1|root,COG1585@2|Bacteria,1N241@1224|Proteobacteria,1S5W4@1236|Gammaproteobacteria,1YG8Y@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	OU	NfeD-like C-terminal, partner-binding	ybbJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K07340	-	-	-	-	ko00000	-	-	-	NfeD
DYD3_k127_28627_4	1123060.JONP01000003_gene353	1.393e-46	183.0	COG2304@1|root,COG2304@2|Bacteria,1PH4N@1224|Proteobacteria,2TQTJ@28211|Alphaproteobacteria,2JYY0@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1194)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1194
DYD3_k127_28627_0	1121033.AUCF01000003_gene3266	4.843e-121	400.0	COG1092@1|root,COG1092@2|Bacteria,1MUGB@1224|Proteobacteria,2TUNR@28211|Alphaproteobacteria,2JPGZ@204441|Rhodospirillales	204441|Rhodospirillales	J	S-adenosylmethionine-dependent methyltransferase	-	-	2.1.1.191	ko:K06969	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_SAM
DYD3_k127_28627_2	1238182.C882_0257	1.595e-76	259.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,2JPRP@204441|Rhodospirillales	204441|Rhodospirillales	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_2864220_7	402881.Plav_2288	1.187e-08	57.0	COG0556@1|root,COG0556@2|Bacteria,1MUFK@1224|Proteobacteria,2TQSP@28211|Alphaproteobacteria,1JNA8@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	uvrB	-	-	ko:K03702	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	Helicase_C,ResIII,UVR,UvrB
DYD3_k127_2864220_5	1408418.JNJH01000008_gene2514	5.772e-25	109.0	COG1539@1|root,COG1539@2|Bacteria,1MY5Q@1224|Proteobacteria,2TRVX@28211|Alphaproteobacteria,2JTB7@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin	folB	-	1.13.11.81,4.1.2.25,5.1.99.8	ko:K01633	ko00790,ko01100,map00790,map01100	M00126,M00840	R03504,R11037,R11073	RC00721,RC00943,RC01479,RC03333,RC03334	ko00000,ko00001,ko00002,ko01000	-	-	-	FolB
DYD3_k127_2864220_0	1381123.AYOD01000006_gene1170	4.164e-266	832.0	COG0322@1|root,COG0322@2|Bacteria,1MV38@1224|Proteobacteria,2TT32@28211|Alphaproteobacteria,43HQ1@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision	uvrC	GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009380,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:1902494,GO:1905347,GO:1905348,GO:1990391	-	ko:K03703	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N
DYD3_k127_2864220_4	1279038.KB907343_gene2518	3.525e-69	240.0	COG0558@1|root,COG0558@2|Bacteria,1RCZ7@1224|Proteobacteria,2TUI7@28211|Alphaproteobacteria,2JRVC@204441|Rhodospirillales	204441|Rhodospirillales	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pgsA	-	2.7.8.41	ko:K08744	ko00564,ko01100,map00564,map01100	-	R02030	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
DYD3_k127_2864220_6	1248916.ANFY01000005_gene2860	2.182e-22	98.0	COG1977@1|root,COG1977@2|Bacteria,1N0IE@1224|Proteobacteria,2UF4F@28211|Alphaproteobacteria,2K6UZ@204457|Sphingomonadales	204457|Sphingomonadales	H	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin	moaD	-	-	ko:K03636	ko04122,map04122	-	-	-	ko00000,ko00001	-	-	-	ThiS
DYD3_k127_2864220_1	1121033.AUCF01000010_gene4423	9.041e-140	458.0	COG0665@1|root,COG0665@2|Bacteria,1MVGP@1224|Proteobacteria,2TRX9@28211|Alphaproteobacteria,2JQ1W@204441|Rhodospirillales	204441|Rhodospirillales	E	FAD dependent oxidoreductase	ordL	-	-	ko:K09471	ko00330,ko01100,map00330,map01100	M00136	R07415	RC00062	ko00000,ko00001,ko00002,ko01000	-	-	-	DAO
DYD3_k127_2864220_3	402881.Plav_2883	7.704e-91	306.0	COG2935@1|root,COG2935@2|Bacteria,1MW62@1224|Proteobacteria,2TQY8@28211|Alphaproteobacteria,1JN08@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate	ate	GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575	2.3.2.29	ko:K21420	-	-	R11547,R11548	RC00064	ko00000,ko01000	-	-	-	ATE_C,ATE_N
DYD3_k127_2864220_2	414684.RC1_1366	1.089e-134	439.0	COG4663@1|root,COG4663@2|Bacteria,1MVMD@1224|Proteobacteria,2TS4J@28211|Alphaproteobacteria,2JPP5@204441|Rhodospirillales	204441|Rhodospirillales	Q	Part of the tripartite ATP-independent periplasmic (TRAP) transport system	-	-	-	-	-	-	-	-	-	-	-	-	DctP
DYD3_k127_2868072_3	1125973.JNLC01000013_gene3910	1.413e-167	532.0	COG4977@1|root,COG4977@2|Bacteria,1NRX7@1224|Proteobacteria,2TSHD@28211|Alphaproteobacteria,3JVT0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DJ-1/PfpI family	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
DYD3_k127_2868072_2	460265.Mnod_3396	2.139e-217	684.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,2TSJ5@28211|Alphaproteobacteria,1JR44@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	PFAM Rieske 2Fe-2S domain protein	-	-	-	ko:K00479	-	-	-	-	ko00000	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_2868072_4	1120792.JAFV01000001_gene2680	2.879e-156	511.0	COG1018@1|root,COG1018@2|Bacteria,1MY2Q@1224|Proteobacteria,2U0WY@28211|Alphaproteobacteria,36YG9@31993|Methylocystaceae	28211|Alphaproteobacteria	C	Oxidoreductase FAD-binding domain	-	-	1.17.1.1	ko:K00523,ko:K21832	ko00520,map00520	-	R03391,R03392	RC00230	ko00000,ko00001,ko01000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_2868072_5	639283.Snov_3019	2.86e-118	388.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria,3EZ2H@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K21826	-	-	-	-	ko00000,ko03000	-	-	-	DJ-1_PfpI,HTH_18
DYD3_k127_2868072_0	1120792.JAFV01000001_gene2681	0.0	1122.0	COG0446@1|root,COG1902@1|root,COG0446@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQV0@28211|Alphaproteobacteria,36Y79@31993|Methylocystaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	stcD	-	-	ko:K21833	-	-	-	-	ko00000	-	-	-	NAD_binding_8,Oxidored_FMN,Pyr_redox_2
DYD3_k127_2868072_6	1090320.KB900605_gene1280	0.0002677	44.0	COG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,1MUWT@1224|Proteobacteria,2TR70@28211|Alphaproteobacteria,2K10R@204457|Sphingomonadales	204457|Sphingomonadales	H	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate	ribD	-	1.1.1.193,3.5.4.26	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	RibD_C,dCMP_cyt_deam_1
DYD3_k127_2868072_1	1125973.JNLC01000013_gene3903	1.103e-289	900.0	COG0247@1|root,COG0247@2|Bacteria,1MUMH@1224|Proteobacteria,2U0SB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	4Fe-4S ferredoxin iron-sulfur binding domain protein	-	-	-	ko:K21834	-	-	-	-	ko00000	-	-	-	CCG,DUF3483,ETF,Fer4_10,Fer4_8
DYD3_k127_2868284_10	1333998.M2A_1211	1.671e-83	286.0	COG0565@1|root,COG0565@2|Bacteria,1N47Y@1224|Proteobacteria,2TS8J@28211|Alphaproteobacteria,4BQ50@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA	trmJ	-	-	ko:K02533	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DUF559,SpoU_methylase
DYD3_k127_2868284_0	1333998.M2A_2338	7.092e-242	779.0	COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2TSK4@28211|Alphaproteobacteria,4BPHW@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the alpha-IPM synthase homocitrate synthase family	MA20_26350	-	2.3.3.13	ko:K01649	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	M00432	R01213	RC00004,RC00470,RC02754	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like,LeuA_dimer
DYD3_k127_2868284_2	1430440.MGMSRv2_0491	5.313e-188	597.0	COG0215@1|root,COG0215@2|Bacteria,1MV8H@1224|Proteobacteria,2TQQ1@28211|Alphaproteobacteria,2JPU0@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the class-I aminoacyl-tRNA synthetase family	cysS	-	6.1.1.16	ko:K01883	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_2,tRNA-synt_1e,tRNA-synt_1g
DYD3_k127_2868284_12	553385.JEMF01000081_gene2021	4.051e-32	139.0	COG2199@1|root,COG3706@2|Bacteria,1MZV7@1224|Proteobacteria,1RSJI@1236|Gammaproteobacteria,1XR3S@135619|Oceanospirillales	135619|Oceanospirillales	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
DYD3_k127_2868284_5	1205680.CAKO01000029_gene5123	2.024e-159	514.0	COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,2TRCI@28211|Alphaproteobacteria,2JPFP@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX2	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_2868284_1	1248916.ANFY01000010_gene331	1.013e-231	729.0	COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,1MU9U@1224|Proteobacteria,2TRAU@28211|Alphaproteobacteria,2K0R3@204457|Sphingomonadales	204457|Sphingomonadales	H	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	nadE	-	6.3.1.5	ko:K01916	ko00760,ko01100,map00760,map01100	M00115	R00189	RC00100	ko00000,ko00001,ko00002,ko01000	-	-	-	CN_hydrolase,NAD_synthase
DYD3_k127_2868284_7	1282876.BAOK01000002_gene521	1.3e-154	495.0	COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2TQYM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	NADP-dependent oxidoreductase	-	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
DYD3_k127_2868284_9	644283.Micau_4445	2.54e-114	381.0	COG2130@1|root,COG2130@2|Bacteria,2GKR8@201174|Actinobacteria,4DB3X@85008|Micromonosporales	201174|Actinobacteria	S	PFAM Alcohol dehydrogenase zinc-binding domain protein	-	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
DYD3_k127_2868284_3	438753.AZC_1860	1.61e-170	550.0	COG0477@1|root,COG2814@2|Bacteria,1MX2Q@1224|Proteobacteria,2TRNS@28211|Alphaproteobacteria,3EXY2@335928|Xanthobacteraceae	28211|Alphaproteobacteria	EGP	Fungal trichothecene efflux pump (TRI12)	MA20_15570	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_2868284_8	1298867.AUES01000026_gene3021	1.138e-120	393.0	COG4689@1|root,COG4689@2|Bacteria,1N4IP@1224|Proteobacteria,2TTZX@28211|Alphaproteobacteria,3JRAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Catalyzes the conversion of acetoacetate to acetone and carbon dioxide	adc	-	4.1.1.4	ko:K01574	ko00072,ko00640,ko01100,map00072,map00640,map01100	M00088	R01366	RC00040	ko00000,ko00001,ko00002,ko01000	-	-	-	ADC
DYD3_k127_2868284_6	78245.Xaut_2133	2.049e-155	499.0	COG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria,3F0YH@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Patatin phospholipase	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	DUF3734,Patatin
DYD3_k127_2868284_4	1238182.C882_4275	3.766e-161	516.0	COG1488@1|root,COG1488@2|Bacteria,1R5W0@1224|Proteobacteria,2U3JU@28211|Alphaproteobacteria,2JQBV@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	-	-	6.3.4.21	ko:K00763	ko00760,ko01100,map00760,map01100	-	R01724	RC00033	ko00000,ko00001,ko01000	-	-	-	QRPTase_N
DYD3_k127_2868284_14	1231392.OCGS_2187	1.523e-22	100.0	COG3905@1|root,COG3905@2|Bacteria,1NHN3@1224|Proteobacteria,2UFBR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	RHH_1
DYD3_k127_2868284_13	1530186.JQEY01000010_gene2769	9.121e-26	110.0	COG3668@1|root,COG3668@2|Bacteria,1NFJA@1224|Proteobacteria,2UGPP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Plasmid stabilization	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_2868284_11	1333998.M2A_1707	5.749e-56	198.0	COG1960@1|root,COG1960@2|Bacteria,1MUBH@1224|Proteobacteria,2TSKH@28211|Alphaproteobacteria,4BT84@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_2869483_0	570967.JMLV01000001_gene2732	1.36e-229	723.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TR8H@28211|Alphaproteobacteria,2JPPA@204441|Rhodospirillales	204441|Rhodospirillales	C	COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	lpD	-	1.8.1.4	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Pyr_redox_2,Pyr_redox_dim
DYD3_k127_2869483_2	1292034.OR37_00358	3.718e-150	486.0	COG0508@1|root,COG0508@2|Bacteria,1MUGY@1224|Proteobacteria,2TRXM@28211|Alphaproteobacteria,2KG5R@204458|Caulobacterales	204458|Caulobacterales	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	-	-	2.3.1.12	ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	M00307	R00209,R02569	RC00004,RC02742,RC02857	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl,E3_binding
DYD3_k127_2869483_1	1122135.KB893167_gene2321	1.782e-175	557.0	COG0022@1|root,COG0022@2|Bacteria,1R8KB@1224|Proteobacteria,2TRMR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhB	-	1.2.4.1	ko:K00162	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_lipoyl,Transket_pyr,Transketolase_C
DYD3_k127_2877593_1	1207063.P24_02136	6.402e-67	231.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,2JQ6J@204441|Rhodospirillales	204441|Rhodospirillales	E	COG4166 ABC-type oligopeptide transport system, periplasmic component	-	-	-	ko:K13893	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	SBP_bac_5
DYD3_k127_2877593_0	195105.CN97_13450	6.35e-129	423.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	ABC-type oligopeptide transport system periplasmic component	-	-	-	ko:K13893	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	SBP_bac_5
DYD3_k127_2896777_1	1207063.P24_08009	2.941e-73	250.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,2JR7A@204441|Rhodospirillales	204441|Rhodospirillales	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
DYD3_k127_2896777_0	1430440.MGMSRv2_1410	5.69e-113	381.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,2JR5W@204441|Rhodospirillales	204441|Rhodospirillales	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
DYD3_k127_2896777_3	1446473.JHWH01000003_gene3349	1.519e-28	116.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,2PWK6@265|Paracoccus	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_22895	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
DYD3_k127_2896777_2	1430440.MGMSRv2_1410	1.426e-62	222.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,2JR5W@204441|Rhodospirillales	204441|Rhodospirillales	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
DYD3_k127_2906597_0	402881.Plav_2966	2.566e-129	431.0	COG0651@1|root,COG0651@2|Bacteria,1QU5Z@1224|Proteobacteria,2U1B0@28211|Alphaproteobacteria,1JPY4@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Proton-conducting membrane transporter	nuoL2	-	1.6.5.3	ko:K00341,ko:K05568	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000,ko02000	2.A.63.1,2.A.63.2,3.D.1	-	-	Proton_antipo_M,Proton_antipo_N
DYD3_k127_2917990_1	237609.PSAKL28_22910	3.336e-115	384.0	COG0457@1|root,COG0457@2|Bacteria,1N01S@1224|Proteobacteria,1S0RI@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_2917990_0	1168059.KB899087_gene3150	2.583e-125	412.0	COG0477@1|root,COG2814@2|Bacteria,1MVUF@1224|Proteobacteria,2TU4M@28211|Alphaproteobacteria,3EYUZ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_1_like,Sugar_tr
DYD3_k127_296935_1	296591.Bpro_5265	1.01e-118	406.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2VJ7Q@28216|Betaproteobacteria,4AB7G@80864|Comamonadaceae	28216|Betaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_296935_3	1298867.AUES01000006_gene360	1.815e-84	287.0	COG2249@1|root,COG2249@2|Bacteria,1MUHN@1224|Proteobacteria,2U15Z@28211|Alphaproteobacteria,3JSDQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavodoxin-like fold	-	-	1.6.5.2	ko:K00355	ko00130,ko01110,ko05200,ko05225,ko05418,map00130,map01110,map05200,map05225,map05418	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	Flavodoxin_2
DYD3_k127_296935_4	331869.BAL199_16733	1.228e-73	258.0	COG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,2U63V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	5.3.3.18	ko:K15866	ko00360,ko01120,map00360,map01120	-	R09837,R09839	RC00004,RC00326,RC02689,RC03003	ko00000,ko00001,ko01000	-	-	-	ECH_1
DYD3_k127_296935_2	373994.Riv7116_2845	2.723e-108	367.0	COG3670@1|root,COG3670@2|Bacteria,1G16F@1117|Cyanobacteria,1HJ72@1161|Nostocales	1117|Cyanobacteria	Q	PFAM Retinal pigment epithelial membrane protein	-	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
DYD3_k127_296935_0	1449049.JONW01000011_gene2127	5.453e-120	392.0	COG1024@1|root,COG1024@2|Bacteria,1MVPQ@1224|Proteobacteria,2TTJ4@28211|Alphaproteobacteria,2KG1I@204458|Caulobacterales	204458|Caulobacterales	I	PFAM Enoyl-CoA hydratase isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_296935_5	1144275.COCOR_03153	1.108e-13	72.0	COG2909@1|root,COG2909@2|Bacteria,1MVZZ@1224|Proteobacteria	1224|Proteobacteria	K	Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides. Binds and recognizes a DNA motif (called the malT box) 5'-GGA TG GA-3'	acoK	-	-	ko:K03556	-	-	-	-	ko00000,ko03000	-	-	-	AAA_16,GerE,TPR_12
DYD3_k127_297030_0	977880.RALTA_A3198	1.265e-196	625.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2VMQV@28216|Betaproteobacteria,1K01B@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	-	ko:K07222	-	-	-	-	ko00000	-	-	-	FMO-like,K_oxygenase,Pyr_redox_3
DYD3_k127_297030_1	1297865.APJD01000015_gene3457	2.518e-45	171.0	COG1309@1|root,COG1309@2|Bacteria,1MZE6@1224|Proteobacteria,2U412@28211|Alphaproteobacteria,3JXNZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_297030_2	198628.Dda3937_02842	7.891e-17	80.0	COG1813@1|root,COG1813@2|Bacteria,1QU3A@1224|Proteobacteria,1RQEV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2,HTH_3
DYD3_k127_2991905_0	765698.Mesci_0716	4.735e-170	557.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,43IYG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	ko:K18661	ko00280,map00280	-	R03383	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_2991905_1	935557.ATYB01000009_gene1015	2.021e-166	536.0	COG1593@1|root,COG1593@2|Bacteria,1MUQE@1224|Proteobacteria,2TSSE@28211|Alphaproteobacteria,4BAYM@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Malonyl-CoA decarboxylase	matA	-	4.1.1.9	ko:K01578	ko00410,ko00640,ko01100,ko04146,ko04152,map00410,map00640,map01100,map04146,map04152	-	R00233	RC00040	ko00000,ko00001,ko01000	-	-	-	MCD,MCD_N
DYD3_k127_2991905_2	1040989.AWZU01000044_gene6174	5.668e-27	110.0	COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TQW5@28211|Alphaproteobacteria,3JTXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporter, DctM component	MA20_30170	-	-	-	-	-	-	-	-	-	-	-	DctM
DYD3_k127_2992489_1	391613.RTM1035_09064	2.551e-77	266.0	COG1985@1|root,COG1985@2|Bacteria,1RES9@1224|Proteobacteria,2U7YG@28211|Alphaproteobacteria,46NR1@74030|Roseovarius	28211|Alphaproteobacteria	H	RibD C-terminal domain	-	-	1.1.1.193	ko:K00082	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R03458	RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	RibD_C
DYD3_k127_2992489_0	1123024.AUII01000028_gene2510	5.184e-117	387.0	COG1368@1|root,COG1368@2|Bacteria,2GKS9@201174|Actinobacteria,4EF92@85010|Pseudonocardiales	201174|Actinobacteria	M	sulfuric ester hydrolase activity	-	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
DYD3_k127_3000040_1	886293.Sinac_2402	3.649e-101	339.0	COG3501@1|root,COG3501@2|Bacteria,2IWY7@203682|Planctomycetes	203682|Planctomycetes	Q	TIGRFAM type VI secretion system Vgr family protein	-	-	-	ko:K11904	ko03070,map03070	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	Phage_GPD
DYD3_k127_3000040_4	1121861.KB899910_gene686	1.14e-29	125.0	COG1716@1|root,COG1716@2|Bacteria,1R8D7@1224|Proteobacteria,2UHDX@28211|Alphaproteobacteria,2JWUC@204441|Rhodospirillales	204441|Rhodospirillales	T	ATPase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3000040_3	1120953.AUBH01000003_gene2180	2.739e-35	144.0	COG4104@1|root,COG4104@2|Bacteria,1N0ZK@1224|Proteobacteria,1S9FK@1236|Gammaproteobacteria,46918@72275|Alteromonadaceae	1236|Gammaproteobacteria	M	PAAR motif	-	-	-	-	-	-	-	-	-	-	-	-	PAAR_motif
DYD3_k127_3000040_2	314265.R2601_16040	1.724e-69	254.0	COG1716@1|root,COG3456@1|root,COG1716@2|Bacteria,COG3456@2|Bacteria,1R3R7@1224|Proteobacteria,2TUSB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	conserved protein, contains FHA domain	-	-	-	ko:K11894	-	-	-	-	ko00000,ko02044	3.A.23.1	-	-	FHA
DYD3_k127_3000040_0	1408418.JNJH01000025_gene53	8.483e-164	526.0	COG3522@1|root,COG3522@2|Bacteria,1MXKE@1224|Proteobacteria,2TVMX@28211|Alphaproteobacteria,2JUMT@204441|Rhodospirillales	204441|Rhodospirillales	S	Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE	-	-	-	ko:K11893	ko02025,map02025	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	T6SS_VasE
DYD3_k127_3000040_5	439496.RBY4I_205	0.000877	44.0	COG1360@1|root,COG3455@1|root,COG1360@2|Bacteria,COG3455@2|Bacteria,1MU13@1224|Proteobacteria,2TTGF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	Protein conserved in bacteria	impK	-	-	ko:K11892	ko03070,map03070	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	DotU,OmpA
DYD3_k127_3002129_2	932213.SPM24T3_03772	7.015e-80	275.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,1T1DJ@1236|Gammaproteobacteria,4045J@613|Serratia	1236|Gammaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	-	ko:K00479	-	-	-	-	ko00000	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_3002129_0	359.CN09_24610	1.606e-150	486.0	COG2141@1|root,COG2141@2|Bacteria,1MX64@1224|Proteobacteria,2U6SB@28211|Alphaproteobacteria,4BMP2@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
DYD3_k127_3002129_1	1229485.AMYV01000007_gene1047	5.162e-96	323.0	COG0765@1|root,COG0765@2|Bacteria,1MXJW@1224|Proteobacteria,1SK3X@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02029	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	BPD_transp_1
DYD3_k127_3004679_9	426117.M446_2187	9.918e-101	333.0	COG0600@1|root,COG0600@2|Bacteria,1R5NP@1224|Proteobacteria,2VETS@28211|Alphaproteobacteria,1JSS4@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	PFAM binding-protein-dependent transport systems inner membrane component	MA20_23325	-	-	ko:K15554	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	BPD_transp_1
DYD3_k127_3004679_10	935840.JAEQ01000008_gene721	9.829e-93	311.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TRNE@28211|Alphaproteobacteria,43QYW@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_23320	-	-	ko:K15555	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.17.2	-	-	ABC_tran
DYD3_k127_3004679_5	1120792.JAFV01000001_gene382	4.193e-129	439.0	COG4529@1|root,COG4529@2|Bacteria,1MU3U@1224|Proteobacteria,2TUBM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_9
DYD3_k127_3004679_16	1348657.M622_01410	1.483e-37	148.0	COG1309@1|root,COG1309@2|Bacteria,1RARJ@1224|Proteobacteria,2VQUZ@28216|Betaproteobacteria,2KWA1@206389|Rhodocyclales	206389|Rhodocyclales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_6,TetR_N
DYD3_k127_3004679_4	338966.Ppro_0331	6.252e-131	430.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,42NHV@68525|delta/epsilon subdivisions,2WJBA@28221|Deltaproteobacteria,43T2U@69541|Desulfuromonadales	28221|Deltaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	acrA	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	Biotin_lipoyl_2,HlyD,HlyD_3,HlyD_D23
DYD3_k127_3004679_15	582744.Msip34_2671	8.163e-63	218.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2VHFI@28216|Betaproteobacteria,2KMCX@206350|Nitrosomonadales	206350|Nitrosomonadales	V	AcrB/AcrD/AcrF family	-	-	-	ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_3004679_0	399741.Spro_3700	0.0	1174.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,40003@613|Serratia	1236|Gammaproteobacteria	U	Efflux pump membrane transporter	acrB	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K18138,ko:K18142	ko01501,ko01503,map01501,map01503	M00647,M00696,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	iAF1260.b3266,iJO1366.b3266,iZ_1308.Z4627	ACR_tran
DYD3_k127_3004679_2	269799.Gmet_0811	1.192e-162	534.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,42NKZ@68525|delta/epsilon subdivisions,2WIRB@28221|Deltaproteobacteria,43U7T@69541|Desulfuromonadales	28221|Deltaproteobacteria	M	TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family	-	-	-	ko:K18139	ko01501,ko02024,map01501,map02024	M00642,M00643,M00647,M00718,M00768,M00822	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	1.B.17,2.A.6.2	-	-	OEP
DYD3_k127_3004679_8	1205753.A989_17348	2.814e-104	346.0	COG1235@1|root,COG1235@2|Bacteria,1MWI5@1224|Proteobacteria,1RMM9@1236|Gammaproteobacteria,1X5KB@135614|Xanthomonadales	135614|Xanthomonadales	S	May be involved in the transport of PQQ or its precursor to the periplasm	pqqB	-	-	ko:K06136	-	-	-	-	ko00000	-	-	-	Lactamase_B_2
DYD3_k127_3004679_13	1380391.JIAS01000012_gene4042	5.504e-80	276.0	COG0697@1|root,COG0697@2|Bacteria,1RFZW@1224|Proteobacteria,2TRXD@28211|Alphaproteobacteria,2JTK2@204441|Rhodospirillales	204441|Rhodospirillales	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_3004679_7	762376.AXYL_05199	6.176e-107	364.0	COG0583@1|root,COG0583@2|Bacteria,1MXRP@1224|Proteobacteria,2VQ8X@28216|Betaproteobacteria,3T65I@506|Alcaligenaceae	28216|Betaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_3004679_14	311403.Arad_9417	1.458e-69	241.0	COG2059@1|root,COG2059@2|Bacteria,1RFMD@1224|Proteobacteria,2VG8D@28211|Alphaproteobacteria,4BK0J@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Chromate transporter	-	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
DYD3_k127_3004679_12	1005048.CFU_1960	1.486e-82	276.0	COG2059@1|root,COG2059@2|Bacteria,1RB6A@1224|Proteobacteria,2VQ0E@28216|Betaproteobacteria,474F6@75682|Oxalobacteraceae	28216|Betaproteobacteria	P	overlaps another CDS with the same product name	-	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
DYD3_k127_3004679_1	1430440.MGMSRv2_0142	1.978e-226	719.0	COG3211@1|root,COG3211@2|Bacteria,1MU8T@1224|Proteobacteria,2TRVM@28211|Alphaproteobacteria,2JQ7M@204441|Rhodospirillales	204441|Rhodospirillales	S	Bacterial protein of unknown function (DUF839)	-	-	-	ko:K07093	-	-	-	-	ko00000	-	-	-	DUF839
DYD3_k127_3004679_11	402881.Plav_1560	1.328e-82	297.0	COG2866@1|root,COG2866@2|Bacteria,1N6CX@1224|Proteobacteria,2U3MG@28211|Alphaproteobacteria	1224|Proteobacteria	E	Protein of unknown function (DUF2817)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2817
DYD3_k127_3004679_6	1333998.M2A_1294	2.671e-115	383.0	COG4948@1|root,COG4948@2|Bacteria,1MW76@1224|Proteobacteria,2TR16@28211|Alphaproteobacteria,4BQNI@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	ycjG	GO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0016855	5.1.1.20	ko:K19802	-	-	R10938	RC03309	ko00000,ko01000	-	-	-	MR_MLE_C,MR_MLE_N
DYD3_k127_3004679_3	991905.SL003B_1492	6.651e-154	492.0	COG3367@1|root,COG3367@2|Bacteria,1MVEX@1224|Proteobacteria,2TS0Y@28211|Alphaproteobacteria,4BP6N@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1611_N) Rossmann-like domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF1611,DUF1611_N
DYD3_k127_3004679_17	6412.HelroP173260	2.57e-34	135.0	COG3474@1|root,KOG3453@2759|Eukaryota,3A3GP@33154|Opisthokonta,3BRIC@33208|Metazoa,3D83X@33213|Bilateria	33208|Metazoa	C	electron transfer activity	CYCS	GO:0000159,GO:0002931,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0020037,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045155,GO:0045333,GO:0045862,GO:0046034,GO:0046483,GO:0046688,GO:0046906,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_3004679_18	1380394.JADL01000001_gene2826	8.49e-27	116.0	COG5330@1|root,COG5330@2|Bacteria,1MXBZ@1224|Proteobacteria,2TT9C@28211|Alphaproteobacteria,2JP8Y@204441|Rhodospirillales	204441|Rhodospirillales	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_301055_3	981384.AEYW01000006_gene2251	1.762e-55	203.0	COG2267@1|root,COG2267@2|Bacteria,1QTNZ@1224|Proteobacteria,2V255@28211|Alphaproteobacteria,4ND6G@97050|Ruegeria	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
DYD3_k127_301055_2	1110502.TMO_2978	1.597e-71	244.0	COG1051@1|root,COG1051@2|Bacteria,1QU0T@1224|Proteobacteria,2TW25@28211|Alphaproteobacteria,2JSS3@204441|Rhodospirillales	204441|Rhodospirillales	F	Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage	nudH	-	-	ko:K08311	ko03018,map03018	-	R10816	RC00002	ko00000,ko00001,ko01000,ko03019	-	-	-	NUDIX
DYD3_k127_301055_1	1380394.JADL01000008_gene3716	1.543e-72	261.0	COG2861@1|root,COG2861@2|Bacteria,1N3JP@1224|Proteobacteria,2TUFD@28211|Alphaproteobacteria,2JS43@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	ko:K09798	-	-	-	-	ko00000	-	-	-	Polysacc_deac_2
DYD3_k127_301055_0	1122929.KB908216_gene2103	2.444e-156	505.0	COG0793@1|root,COG0793@2|Bacteria,1MU39@1224|Proteobacteria,2TRW2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the peptidase S41A family	ctpA	-	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ_2,Peptidase_S41
DYD3_k127_301055_4	1333998.M2A_0817	6.946e-18	84.0	COG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,2TUSP@28211|Alphaproteobacteria,4BQC6@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	D	Peptidase family M23	filA	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_3012411_12	1430440.MGMSRv2_4172	9.783e-46	177.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSC5@28211|Alphaproteobacteria,2JPQ5@204441|Rhodospirillales	204441|Rhodospirillales	V	ATPases associated with a variety of cellular activities	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_3012411_4	1110502.TMO_0023	2.004e-112	385.0	COG4191@1|root,COG4191@2|Bacteria,1MWR3@1224|Proteobacteria,2TSS0@28211|Alphaproteobacteria,2JPN6@204441|Rhodospirillales	204441|Rhodospirillales	T	His Kinase A (phosphoacceptor) domain	regB	-	2.7.13.3	ko:K15011	ko02020,map02020	M00523	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA
DYD3_k127_3012411_9	1122218.KB893654_gene1813	1.993e-75	257.0	COG4567@1|root,COG4567@2|Bacteria,1RD7J@1224|Proteobacteria,2TSK7@28211|Alphaproteobacteria,1JRHI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	T	PFAM response regulator receiver	regA	GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007	-	ko:K15012	ko02020,map02020	M00523	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg
DYD3_k127_3012411_14	1280948.HY36_02660	4.907e-40	153.0	COG5321@1|root,COG5321@2|Bacteria,1RDXW@1224|Proteobacteria,2U73Y@28211|Alphaproteobacteria,43Y8R@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	DNA repair protein MmcB-like	MA20_23405	-	-	-	-	-	-	-	-	-	-	-	MmcB-like
DYD3_k127_3012411_19	76114.ebA3954	9.265e-05	55.0	COG1414@1|root,COG1414@2|Bacteria,1NMZV@1224|Proteobacteria,2VYEZ@28216|Betaproteobacteria,2KYSE@206389|Rhodocyclales	206389|Rhodocyclales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3012411_1	1380391.JIAS01000001_gene2810	1.402e-161	549.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,2JWHH@204441|Rhodospirillales	204441|Rhodospirillales	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	FG-GAP,HemolysinCabind
DYD3_k127_3012411_2	1333998.M2A_2408	1.039e-159	510.0	COG1633@1|root,COG1633@2|Bacteria	2|Bacteria	S	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)	vioB	-	1.14.19.11,1.14.19.2,1.14.19.26,1.16.3.1	ko:K03594,ko:K03921,ko:K20087	ko00061,ko00404,ko00860,ko01040,ko01130,ko01212,ko02024,map00061,map00404,map00860,map01040,map01130,map01212,map02024	M00808	R00078,R03370,R08161,R11108,R11109,R11131	RC00917,RC02758,RC03364	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ferritin-like
DYD3_k127_3012411_18	266835.14021675	5.463e-06	53.0	2BV71@1|root,32QKG@2|Bacteria,1Q7KQ@1224|Proteobacteria,2VDRZ@28211|Alphaproteobacteria,43KY1@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3012411_5	640510.BC1001_1479	1.479e-108	367.0	COG0840@1|root,COG0840@2|Bacteria,1NJXF@1224|Proteobacteria,2VM8I@28216|Betaproteobacteria,1K2XS@119060|Burkholderiaceae	28216|Betaproteobacteria	NT	PFAM chemotaxis sensory transducer	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal
DYD3_k127_3012411_3	1089551.KE386572_gene939	1.006e-129	425.0	COG0477@1|root,COG2814@2|Bacteria,1MU1I@1224|Proteobacteria,2TVXT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EGP	Major facilitator Superfamily	emrB	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
DYD3_k127_3012411_15	1430440.MGMSRv2_2915	4.061e-39	149.0	COG0477@1|root,COG0477@2|Bacteria,1RGPN@1224|Proteobacteria,2TQKW@28211|Alphaproteobacteria,2JPHG@204441|Rhodospirillales	204441|Rhodospirillales	EGP	the major facilitator superfamily	-	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
DYD3_k127_3012411_8	1110502.TMO_2900	9.399e-80	279.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,2JPQB@204441|Rhodospirillales	204441|Rhodospirillales	V	multidrug resistance efflux pump	-	-	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_3012411_13	1121033.AUCF01000046_gene540	2.318e-42	163.0	COG1309@1|root,COG1309@2|Bacteria,1MZ9E@1224|Proteobacteria,2U0MU@28211|Alphaproteobacteria,2JT9J@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
DYD3_k127_3012411_0	414684.RC1_0502	2.14e-207	673.0	COG0025@1|root,COG0664@1|root,COG0025@2|Bacteria,COG0664@2|Bacteria,1MW5T@1224|Proteobacteria,2TSHB@28211|Alphaproteobacteria,2JQD0@204441|Rhodospirillales	204441|Rhodospirillales	PT	Sodium/hydrogen exchanger family	-	-	-	ko:K03316	-	-	-	-	ko00000	2.A.36	-	-	Na_H_Exchanger,cNMP_binding
DYD3_k127_3012411_10	1333998.M2A_0370	5.822e-74	261.0	COG1011@1|root,COG1011@2|Bacteria,1Q69X@1224|Proteobacteria,2TTTP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	hydrolase	MA20_23095	-	-	ko:K07025	-	-	-	-	ko00000	-	-	-	HAD_2
DYD3_k127_3012411_17	504832.OCAR_7579	1.338e-24	112.0	COG1925@1|root,COG1925@2|Bacteria,1N6RM@1224|Proteobacteria,2UC0H@28211|Alphaproteobacteria,3JZF9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	system phosphocarrier protein HPr	ptsH	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006808,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0044424,GO:0044464,GO:0050789,GO:0051179,GO:0051234,GO:0065007,GO:0071702	-	ko:K11189	-	-	-	-	ko00000,ko02000	4.A.2.1	-	-	PTS-HPr
DYD3_k127_3012411_11	1110502.TMO_0172	1.446e-58	208.0	COG2893@1|root,COG2893@2|Bacteria,1RHH7@1224|Proteobacteria,2U9E5@28211|Alphaproteobacteria,2JS9V@204441|Rhodospirillales	204441|Rhodospirillales	G	COG2893 Phosphotransferase system, mannose fructose-specific component IIA	manX	-	2.7.1.191	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	M00276	R02630	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.6.1	-	-	EIIA-man
DYD3_k127_3012411_7	1121033.AUCF01000003_gene3222	2.523e-88	300.0	COG1660@1|root,COG1660@2|Bacteria,1MVX6@1224|Proteobacteria,2TTI4@28211|Alphaproteobacteria,2JPS2@204441|Rhodospirillales	204441|Rhodospirillales	T	Displays ATPase and GTPase activities	-	-	-	ko:K06958	-	-	-	-	ko00000,ko03019	-	-	-	ATP_bind_2,Hpr_kinase_C
DYD3_k127_3012411_16	1430440.MGMSRv2_1784	6.902e-36	143.0	COG1493@1|root,COG1493@2|Bacteria,1NNN5@1224|Proteobacteria,2UFPB@28211|Alphaproteobacteria,2JTFD@204441|Rhodospirillales	204441|Rhodospirillales	T	COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism	hprK	-	-	ko:K06023	-	-	-	-	ko00000,ko01000	-	-	-	Hpr_kinase_C
DYD3_k127_3012411_6	1380394.JADL01000002_gene1647	5.42e-106	355.0	COG5002@1|root,COG5002@2|Bacteria,1QU7C@1224|Proteobacteria,2TWBW@28211|Alphaproteobacteria,2JPN9@204441|Rhodospirillales	204441|Rhodospirillales	T	Stimulus-sensing domain	chvG	-	2.7.13.3	ko:K14980	ko02020,map02020	M00520	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,Sensor_TM1,Stimulus_sens_1
DYD3_k127_3038068_0	983920.Y88_3598	0.0	1048.0	COG3808@1|root,COG3808@2|Bacteria,1MUQ3@1224|Proteobacteria,2TR9G@28211|Alphaproteobacteria,2K0XA@204457|Sphingomonadales	204457|Sphingomonadales	C	Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force	hppA	-	3.6.1.1	ko:K15987	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	3.A.10.1	-	-	H_PPase
DYD3_k127_3038068_1	517722.AEUE01000007_gene382	4.431e-59	210.0	COG0611@1|root,COG0611@2|Bacteria,1MU9X@1224|Proteobacteria,2TTI6@28211|Alphaproteobacteria,2K0EU@204457|Sphingomonadales	204457|Sphingomonadales	H	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1	thiL	-	2.7.4.16	ko:K00946	ko00730,ko01100,map00730,map01100	M00127	R00617	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_3051672_0	1333998.M2A_1336	4.122e-183	588.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TQPZ@28211|Alphaproteobacteria,4BPCV@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	Belongs to the peptidase S1C family	degP	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ,PDZ_2,Trypsin_2
DYD3_k127_3051672_3	1220535.IMCC14465_13840	3.515e-90	306.0	COG0330@1|root,COG0330@2|Bacteria,1MV7R@1224|Proteobacteria,2TRP4@28211|Alphaproteobacteria,4BPGN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	HflC and HflK could regulate a protease	hflC	-	-	ko:K04087	-	M00742	-	-	ko00000,ko00002,ko01000	-	-	-	Band_7
DYD3_k127_3051672_2	414684.RC1_1983	3.375e-112	374.0	COG0330@1|root,COG0330@2|Bacteria,1MUM2@1224|Proteobacteria,2TRTP@28211|Alphaproteobacteria,2JQ87@204441|Rhodospirillales	204441|Rhodospirillales	O	HflC and HflK could encode or regulate a protease	hflK	-	-	ko:K04088	-	M00742	-	-	ko00000,ko00002,ko01000	-	-	-	Band_7,HflK_N
DYD3_k127_3051672_1	1380391.JIAS01000008_gene5555	4.493e-133	433.0	COG0489@1|root,COG0489@2|Bacteria,1MU7R@1224|Proteobacteria,2TRDM@28211|Alphaproteobacteria,2JP8N@204441|Rhodospirillales	204441|Rhodospirillales	D	Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP	-	-	-	ko:K03593	-	-	-	-	ko00000,ko03029,ko03036	-	-	-	FeS_assembly_P,ParA
DYD3_k127_3051672_5	670292.JH26_22645	4.244e-61	234.0	COG3920@1|root,COG3920@2|Bacteria,1RBAV@1224|Proteobacteria,2U64A@28211|Alphaproteobacteria,1JTSH@119045|Methylobacteriaceae	2|Bacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HATPase_c_2,HisKA_2
DYD3_k127_3051672_6	1121861.KB899919_gene2704	0.0002087	54.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQS8@28211|Alphaproteobacteria,2JW6V@204441|Rhodospirillales	204441|Rhodospirillales	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,Response_reg,dCache_1
DYD3_k127_3051672_4	1380391.JIAS01000011_gene4728	2.49e-66	230.0	COG1335@1|root,COG1335@2|Bacteria,1RBPN@1224|Proteobacteria,2U8JS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_3085525_9	314271.RB2654_10488	7.104e-07	57.0	COG0457@1|root,COG0457@2|Bacteria,1NCSM@1224|Proteobacteria,2UGJ2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3085525_0	1038858.AXBA01000002_gene3848	9.967e-309	951.0	COG0747@1|root,COG0747@2|Bacteria,1MWR7@1224|Proteobacteria,2TS51@28211|Alphaproteobacteria,3EZHC@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	MA20_22710	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5,TAT_signal
DYD3_k127_3085525_2	1131814.JAFO01000001_gene1998	9.187e-165	523.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TQKK@28211|Alphaproteobacteria,3EYAS@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_22705	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_3085525_4	1120792.JAFV01000001_gene3896	1.201e-151	490.0	COG1173@1|root,COG1173@2|Bacteria,1MW3R@1224|Proteobacteria,2TUCW@28211|Alphaproteobacteria,36ZZF@31993|Methylocystaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	MA20_22700	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
DYD3_k127_3085525_1	438753.AZC_1514	5.077e-268	834.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,3F0TM@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_22695	-	-	ko:K02031,ko:K02032,ko:K13892,ko:K13896	ko02010,ko02024,map02010,map02024	M00239,M00348,M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.11,3.A.1.5.21,3.A.1.5.24	-	-	ABC_tran,oligo_HPY
DYD3_k127_3085525_6	1082931.KKY_2144	5.986e-130	419.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TSH9@28211|Alphaproteobacteria,3N6UD@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_3085525_7	1082931.KKY_2143	4.495e-115	379.0	COG0600@1|root,COG0600@2|Bacteria,1MVAE@1224|Proteobacteria,2TSAS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	ABC-type nitrate sulfonate bicarbonate transport system permease component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_3085525_5	1082931.KKY_2142	1.526e-134	439.0	COG0715@1|root,COG0715@2|Bacteria,1R60E@1224|Proteobacteria,2U09M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	ABC transporter (Periplasmic binding protein)	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
DYD3_k127_3085525_8	78245.Xaut_4654	2.783e-94	314.0	COG1802@1|root,COG1802@2|Bacteria,1RBIC@1224|Proteobacteria,2U60T@28211|Alphaproteobacteria,3EZ0W@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	FCD	MA20_22675	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_3085525_3	864069.MicloDRAFT_00034930	1.601e-159	511.0	COG0579@1|root,COG0579@2|Bacteria,1N0QB@1224|Proteobacteria,2TU6K@28211|Alphaproteobacteria,1JRQM@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_3086497_4	314265.R2601_15697	1.717e-14	85.0	COG1173@1|root,COG1173@2|Bacteria,1MVER@1224|Proteobacteria,2TWMC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1,OppC_N
DYD3_k127_3086497_2	1089551.KE386572_gene416	2.979e-156	503.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TR3F@28211|Alphaproteobacteria,4BPPC@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components	-	-	-	ko:K02033,ko:K15585	ko02010,ko02024,map02010,map02024	M00239,M00440	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_3086497_0	1120792.JAFV01000001_gene1428	1.117e-260	812.0	COG0747@1|root,COG0747@2|Bacteria,1PHDI@1224|Proteobacteria,2V8EV@28211|Alphaproteobacteria,370P1@31993|Methylocystaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_5
DYD3_k127_3086497_3	269796.Rru_A1347	5.645e-93	311.0	COG1802@1|root,COG1802@2|Bacteria,1RBIC@1224|Proteobacteria,2U60T@28211|Alphaproteobacteria,2JQMZ@204441|Rhodospirillales	204441|Rhodospirillales	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_3086497_1	1125973.JNLC01000004_gene3054	3.701e-221	689.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JVEH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	AcrB/AcrD/AcrF family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_3102960_7	1317124.DW2_01250	6.786e-07	58.0	COG3861@1|root,COG3861@2|Bacteria,1N0R6@1224|Proteobacteria,2U9AS@28211|Alphaproteobacteria,2XM4R@285107|Thioclava	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
DYD3_k127_3102960_4	1500306.JQLA01000003_gene4670	4.81e-32	137.0	COG3668@1|root,32ZH9@2|Bacteria,1N7YH@1224|Proteobacteria,2UC0X@28211|Alphaproteobacteria,4BFEB@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Plasmid stabilization	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3102960_6	1380394.JADL01000012_gene980	2.269e-09	63.0	2EIAN@1|root,33C22@2|Bacteria,1NH5M@1224|Proteobacteria,2UJMR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3102960_1	450851.PHZ_c1907	3.047e-53	193.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2TUUZ@28211|Alphaproteobacteria,2KHRM@204458|Caulobacterales	204458|Caulobacterales	K	Sigma-70, region 4	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_3102960_3	1396141.BATP01000046_gene1871	2.746e-36	142.0	COG5478@1|root,COG5478@2|Bacteria,46SXC@74201|Verrucomicrobia	74201|Verrucomicrobia	S	Low affinity iron permease	-	-	-	-	-	-	-	-	-	-	-	-	Iron_permease
DYD3_k127_3102960_0	1030157.AFMP01000016_gene2516	4.236e-70	246.0	COG1028@1|root,COG1028@2|Bacteria,1R6PI@1224|Proteobacteria,2URTX@28211|Alphaproteobacteria,2K08J@204457|Sphingomonadales	204457|Sphingomonadales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_3102960_5	224911.27353255	1.357e-21	102.0	COG1309@1|root,COG1309@2|Bacteria,1R8KS@1224|Proteobacteria,2TSYV@28211|Alphaproteobacteria,3JURE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_3102960_2	452637.Oter_3167	1.034e-47	192.0	COG3203@1|root,COG3203@2|Bacteria	2|Bacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3104945_5	1380394.JADL01000011_gene3830	5.407e-45	166.0	COG0278@1|root,COG0278@2|Bacteria,1MZ4V@1224|Proteobacteria,2U9QB@28211|Alphaproteobacteria,2JSSH@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the glutaredoxin family. Monothiol subfamily	-	-	-	ko:K07390	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Glutaredoxin
DYD3_k127_3104945_4	883078.HMPREF9695_04287	3.779e-70	240.0	COG2318@1|root,COG2318@2|Bacteria,1RD3M@1224|Proteobacteria,2U8HG@28211|Alphaproteobacteria,3K0NF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DinB family	dinB	-	-	-	-	-	-	-	-	-	-	-	DinB
DYD3_k127_3104945_0	1207063.P24_10685	8.848e-200	649.0	COG2366@1|root,COG2366@2|Bacteria,1MVMH@1224|Proteobacteria,2TS4D@28211|Alphaproteobacteria,2JPKU@204441|Rhodospirillales	204441|Rhodospirillales	S	Penicillin amidase	-	-	3.5.1.11	ko:K01434	ko00311,ko01130,map00311,map01130	-	R02170	RC00166,RC00328	ko00000,ko00001,ko01000,ko01002	-	-	-	Penicil_amidase
DYD3_k127_3104945_2	414684.RC1_3505	2.001e-106	353.0	COG1702@1|root,COG1702@2|Bacteria,1MWMU@1224|Proteobacteria,2TSYC@28211|Alphaproteobacteria,2JPXI@204441|Rhodospirillales	204441|Rhodospirillales	T	COG1702 Phosphate starvation-inducible protein PhoH	-	-	-	ko:K06217	-	-	-	-	ko00000	-	-	-	PhoH
DYD3_k127_3104945_1	1038867.AXAY01000004_gene2652	4.99e-111	370.0	COG3454@1|root,COG3454@2|Bacteria,1MXDS@1224|Proteobacteria,2TQU0@28211|Alphaproteobacteria,3JS90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphonate metabolism	MA20_21505	-	3.6.1.63	ko:K06162	ko00440,map00440	-	R10186	RC00002	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
DYD3_k127_3104945_3	570967.JMLV01000015_gene3104	3.157e-76	263.0	COG2188@1|root,COG2188@2|Bacteria,1Q856@1224|Proteobacteria,2TSMX@28211|Alphaproteobacteria,2JSA4@204441|Rhodospirillales	204441|Rhodospirillales	K	UTRA	-	-	-	ko:K02043	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
DYD3_k127_3104945_6	643562.Daes_1163	4.349e-21	95.0	COG3624@1|root,COG3624@2|Bacteria,1MZTZ@1224|Proteobacteria,42VE8@68525|delta/epsilon subdivisions,2WRN6@28221|Deltaproteobacteria,2MBZP@213115|Desulfovibrionales	28221|Deltaproteobacteria	P	Phosphonate C-P lyase system protein PhnG	-	-	2.7.8.37	ko:K06166	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	PhnG
DYD3_k127_310633_0	1149133.ppKF707_2629	7.94e-200	629.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,1RPW2@1236|Gammaproteobacteria,1YHN4@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	-	-	1.3.8.4	ko:K00253	ko00280,ko01100,map00280,map01100	M00036	R04095	RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_310633_3	1240350.AMZE01000075_gene4390	7.586e-96	319.0	COG1024@1|root,COG1024@2|Bacteria,1PSRK@1224|Proteobacteria,1RZ2F@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	enoyl-CoA hydratase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD3_k127_310633_2	305900.GV64_19240	6.787e-137	450.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,1RPZN@1236|Gammaproteobacteria,1XS79@135619|Oceanospirillales	135619|Oceanospirillales	S	IMP dehydrogenase / GMP reductase domain	-	-	-	-	-	-	-	-	-	-	-	-	NMO
DYD3_k127_310633_1	497321.C664_07713	6.952e-148	473.0	COG1024@1|root,COG1024@2|Bacteria,1R3U7@1224|Proteobacteria,2VMC4@28216|Betaproteobacteria	28216|Betaproteobacteria	I	Enoyl-CoA hydratase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD3_k127_310633_4	497321.C664_07708	4.094e-84	284.0	COG2057@1|root,COG2057@2|Bacteria,1MY3S@1224|Proteobacteria,2VKG3@28216|Betaproteobacteria	28216|Betaproteobacteria	I	Acyl CoA acetate 3-ketoacid CoA	-	-	2.8.3.12	ko:K01040	ko00643,ko00650,ko01120,map00643,map00650,map01120	-	R04000,R05509	RC00012,RC00131,RC00137	ko00000,ko00001,ko01000	-	-	-	-
DYD3_k127_3120876_3	414684.RC1_0377	1.341e-61	220.0	COG0119@1|root,COG0119@2|Bacteria,1MUMX@1224|Proteobacteria,2TT1R@28211|Alphaproteobacteria,2JPU7@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0119 Isopropylmalate homocitrate citramalate synthases	-	-	4.1.3.4	ko:K01640	ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146	M00036,M00088	R01360,R08090	RC00502,RC00503,RC01118,RC01946	ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like
DYD3_k127_3120876_1	1336208.JADY01000005_gene1841	1.071e-268	854.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,2JPR7@204441|Rhodospirillales	204441|Rhodospirillales	I	COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit	-	-	6.4.1.4	ko:K01968	ko00280,ko01100,map00280,map01100	M00036	R04138	RC00367,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
DYD3_k127_3120876_0	1218076.BAYB01000044_gene5806	1.462e-282	889.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2VI77@28216|Betaproteobacteria,1K003@119060|Burkholderiaceae	28216|Betaproteobacteria	I	carboxylase	accB	-	6.4.1.4	ko:K01969	ko00280,ko01100,map00280,map01100	M00036	R04138	RC00367,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
DYD3_k127_3120876_2	1207063.P24_11390	2.055e-215	672.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TREJ@28211|Alphaproteobacteria,2JPCY@204441|Rhodospirillales	204441|Rhodospirillales	I	COG1960 Acyl-CoA dehydrogenases	-	-	1.3.8.4	ko:K00253	ko00280,ko01100,map00280,map01100	M00036	R04095	RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_3120876_4	1304877.KI519399_gene5729	6.005e-58	207.0	COG1309@1|root,COG1309@2|Bacteria,1RJH4@1224|Proteobacteria,2U3EZ@28211|Alphaproteobacteria,3JS0M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_28060	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_3120876_5	189753.AXAS01000010_gene7300	4.862e-32	133.0	COG2159@1|root,COG2159@2|Bacteria,1MUUR@1224|Proteobacteria,2TSQB@28211|Alphaproteobacteria,3JYAC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	ko:K07045	-	-	-	-	ko00000	-	-	-	Amidohydro_2
DYD3_k127_3125898_0	1282876.BAOK01000001_gene1375	3.3e-316	985.0	COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,2TS2B@28211|Alphaproteobacteria,4BP64@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	UvrD-like helicase C-terminal domain	uvrD	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
DYD3_k127_3125898_1	1121033.AUCF01000032_gene2611	2.349e-47	176.0	COG0824@1|root,COG0824@2|Bacteria,1MZB3@1224|Proteobacteria,2U7CU@28211|Alphaproteobacteria,2JTMB@204441|Rhodospirillales	204441|Rhodospirillales	S	Thioesterase-like superfamily	-	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT_2
DYD3_k127_3128898_1	1121106.JQKB01000013_gene5533	5.021e-20	102.0	29YIN@1|root,30KDS@2|Bacteria,1Q8Q5@1224|Proteobacteria,2UXJV@28211|Alphaproteobacteria,2JXUS@204441|Rhodospirillales	1121106.JQKB01000013_gene5533|-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3128898_0	570952.ATVH01000011_gene467	2.251e-89	309.0	COG1749@1|root,COG1749@2|Bacteria,1MU5J@1224|Proteobacteria,2TSF2@28211|Alphaproteobacteria,2JRK8@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellar hook protein FlgE	-	-	-	ko:K02390	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlaE,Flg_bb_rod,Flg_bbr_C
DYD3_k127_3128898_2	323097.Nham_1332	5.941e-05	48.0	COG1256@1|root,COG1256@2|Bacteria,1MV2M@1224|Proteobacteria,2TV1B@28211|Alphaproteobacteria,3JRSV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgK	-	-	ko:K02396	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_3134351_10	247634.GPB2148_2849	9.64e-46	171.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,1RMQ4@1236|Gammaproteobacteria,1J8FQ@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	6.2.1.41	ko:K18687	ko00984,ko01100,ko01120,map00984,map01100,map01120	-	R10769	RC00004,RC00014	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_3134351_1	745310.G432_16985	2.112e-163	523.0	COG2159@1|root,COG2159@2|Bacteria,1N0C7@1224|Proteobacteria,2VGQZ@28211|Alphaproteobacteria,2K3G4@204457|Sphingomonadales	204457|Sphingomonadales	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
DYD3_k127_3134351_9	565045.NOR51B_864	1.26e-62	224.0	COG1028@1|root,COG1028@2|Bacteria,1MUD2@1224|Proteobacteria,1RN5N@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin	entA	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617	1.3.1.28	ko:K00216	ko01053,ko01110,ko01130,map01053,map01110,map01130	-	R01505	RC00534	ko00000,ko00001,ko01000	-	-	iECNA114_1301.ECNA114_0539,iECSF_1327.ECSF_0537,iSF_1195.SF0510,iSFxv_1172.SFxv_0563,iS_1188.S0516	adh_short_C2
DYD3_k127_3134351_4	1122604.JONR01000022_gene703	1.185e-101	336.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,1RMZ4@1236|Gammaproteobacteria,1X76V@135614|Xanthomonadales	135614|Xanthomonadales	Q	Fumarylacetoacetate (FAA) hydrolase family	-	-	4.2.1.132,4.2.1.80	ko:K18364	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R02601,R05864	RC00750,RC02676	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_3134351_2	1123020.AUIE01000042_gene4542	4.389e-125	418.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,1RN8H@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_3134351_6	1415779.JOMH01000001_gene2222	6.611e-94	334.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RY09@1236|Gammaproteobacteria,1X550@135614|Xanthomonadales	135614|Xanthomonadales	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3134351_7	159450.NH14_20605	1.915e-86	295.0	COG2267@1|root,COG2267@2|Bacteria,1MZG8@1224|Proteobacteria,2VN2G@28216|Betaproteobacteria,1K4W5@119060|Burkholderiaceae	28216|Betaproteobacteria	I	Serine aminopeptidase, S33	-	-	3.7.1.17	ko:K16050	ko00984,ko01100,ko01120,ko01220,map00984,map01100,map01120,map01220	-	R09883	RC02018,RC02740	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_3134351_0	381666.H16_B0670	3.927e-282	889.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,2VJ61@28216|Betaproteobacteria,1K1UZ@119060|Burkholderiaceae	28216|Betaproteobacteria	S	MMPL family	-	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
DYD3_k127_3134351_8	388051.AUFE01000091_gene56	6.09e-81	282.0	COG4447@1|root,COG4447@2|Bacteria,1R7KD@1224|Proteobacteria,2VP7R@28216|Betaproteobacteria,1K41T@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Photosynthesis system II assembly factor YCF48	-	-	-	-	-	-	-	-	-	-	-	-	PSII_BNR
DYD3_k127_3134351_5	216591.BCAM1637	9.09e-98	328.0	COG0346@1|root,COG0346@2|Bacteria,1P5FR@1224|Proteobacteria,2VP8J@28216|Betaproteobacteria,1K62Z@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	bphC	-	1.13.11.25	ko:K16049	ko00984,ko01100,ko01120,ko01220,map00984,map01100,map01120,map01220	-	R04597	RC01610	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
DYD3_k127_3134351_3	1273125.Rrhod_1181	3.164e-107	355.0	COG1018@1|root,COG1018@2|Bacteria,2GKGS@201174|Actinobacteria,4FU79@85025|Nocardiaceae	201174|Actinobacteria	C	Oxidoreductase NAD-binding domain	kshB	-	1.14.13.142	ko:K15983	ko00984,ko01100,ko01120,map00984,map01100,map01120	-	R09860	RC02691	ko00000,ko00001,ko01000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_3135387_1	1232683.ADIMK_2530	4.138e-76	278.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RPY8@1236|Gammaproteobacteria,4645D@72275|Alteromonadaceae	1236|Gammaproteobacteria	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3135387_0	1545915.JROG01000003_gene1146	2.038e-123	407.0	COG3386@1|root,COG3386@2|Bacteria,1MXVD@1224|Proteobacteria,2TVCW@28211|Alphaproteobacteria,2K1RT@204457|Sphingomonadales	204457|Sphingomonadales	G	SMP-30/Gluconolaconase/LRE-like region	-	-	3.1.1.17	ko:K01053	ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220	M00129	R01519,R02933,R03751	RC00537,RC00983	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	SGL
DYD3_k127_3135387_2	1287116.X734_30235	2.105e-14	76.0	COG0834@1|root,COG0834@2|Bacteria,1NT2J@1224|Proteobacteria,2VET9@28211|Alphaproteobacteria,43IBN@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	ET	Belongs to the bacterial solute-binding protein 3 family	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_3136713_0	1121033.AUCF01000001_gene2345	9.098e-314	975.0	COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,2TQNY@28211|Alphaproteobacteria,2JPK1@204441|Rhodospirillales	204441|Rhodospirillales	KT	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance	relA	-	2.7.6.5	ko:K00951	ko00230,map00230	-	R00429	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	ACT_4,HD_4,RelA_SpoT,TGS
DYD3_k127_3136713_4	1282876.BAOK01000001_gene1860	7.273e-81	278.0	COG0461@1|root,COG0461@2|Bacteria,1RIC5@1224|Proteobacteria,2TUX2@28211|Alphaproteobacteria,4BQ9T@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)	pyrE	-	2.4.2.10	ko:K00762	ko00240,ko01100,map00240,map01100	M00051	R01870	RC00611	ko00000,ko00001,ko00002,ko01000	-	-	-	Pribosyltran
DYD3_k127_3136713_2	1244869.H261_01397	1.484e-106	350.0	COG0854@1|root,COG0854@2|Bacteria,1MU9W@1224|Proteobacteria,2TTTF@28211|Alphaproteobacteria,2JPM4@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate	pdxJ	-	2.6.99.2	ko:K03474	ko00750,ko01100,map00750,map01100	M00124	R05838	RC01476	ko00000,ko00001,ko00002,ko01000	-	-	-	PdxJ
DYD3_k127_3136713_7	414684.RC1_1496	2.846e-50	191.0	COG0736@1|root,COG0736@2|Bacteria,1MZBF@1224|Proteobacteria,2U77S@28211|Alphaproteobacteria,2JSR7@204441|Rhodospirillales	204441|Rhodospirillales	I	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein	acpS	-	2.7.8.7	ko:K00997	ko00770,map00770	-	R01625	RC00002	ko00000,ko00001,ko01000	-	-	-	ACPS
DYD3_k127_3136713_3	1333998.M2A_0649	1.624e-97	326.0	COG0681@1|root,COG0681@2|Bacteria,1MXUF@1224|Proteobacteria,2TR9N@28211|Alphaproteobacteria,4BQ0P@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	U	Belongs to the peptidase S26 family	lepB	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24,Peptidase_S26
DYD3_k127_3136713_6	1207063.P24_10755	1.198e-59	221.0	COG0571@1|root,COG0571@2|Bacteria,1MUQ6@1224|Proteobacteria,2TTIA@28211|Alphaproteobacteria,2JRS9@204441|Rhodospirillales	204441|Rhodospirillales	J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	rnc	-	3.1.26.3	ko:K03685	ko03008,ko05205,map03008,map05205	-	-	-	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	-	-	-	Ribonucleas_3_3,dsrm
DYD3_k127_3136713_1	1282876.BAOK01000001_gene1866	1.879e-118	388.0	COG1159@1|root,COG1159@2|Bacteria,1MUKT@1224|Proteobacteria,2TSHM@28211|Alphaproteobacteria,4BPQX@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism	era	-	-	ko:K03595	-	-	-	-	ko00000,ko03009,ko03029	-	-	-	KH_2,MMR_HSR1
DYD3_k127_3136713_8	1333998.M2A_0649	7.189e-39	156.0	COG0681@1|root,COG0681@2|Bacteria,1MXUF@1224|Proteobacteria,2TR9N@28211|Alphaproteobacteria,4BQ0P@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	U	Belongs to the peptidase S26 family	lepB	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24,Peptidase_S26
DYD3_k127_3136713_9	756067.MicvaDRAFT_4861	2.615e-35	143.0	COG5483@1|root,COG5483@2|Bacteria,1G4A0@1117|Cyanobacteria,1HAM4@1150|Oscillatoriales	1117|Cyanobacteria	S	Protein of unknown function, DUF488	-	-	-	-	-	-	-	-	-	-	-	-	DUF488
DYD3_k127_3136713_5	402881.Plav_0083	5.215e-65	232.0	COG3687@1|root,COG3687@2|Bacteria,1RBP4@1224|Proteobacteria,2U7VS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Predicted metal-dependent hydrolase	-	-	-	ko:K07044	-	-	-	-	ko00000	-	-	-	Metal_hydrol
DYD3_k127_3137954_1	1121861.KB899923_gene3458	2.536e-250	787.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TR7S@28211|Alphaproteobacteria,2JQCH@204441|Rhodospirillales	204441|Rhodospirillales	I	Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus	phbC	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1,PhaC_N
DYD3_k127_3137954_2	1123366.TH3_12460	5.979e-172	553.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,2TR6Q@28211|Alphaproteobacteria,2JQDT@204441|Rhodospirillales	204441|Rhodospirillales	JKL	Belongs to the DEAD box helicase family	-	-	3.6.4.13	ko:K11927	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	DEAD,Helicase_C
DYD3_k127_3137954_0	316058.RPB_0803	0.0	1146.0	COG0737@1|root,COG2374@1|root,COG2931@1|root,COG4625@1|root,COG0737@2|Bacteria,COG2374@2|Bacteria,COG2931@2|Bacteria,COG4625@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,3JTJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	5_nucleotid_C,HemolysinCabind,Reprolysin_4
DYD3_k127_3137954_5	179408.Osc7112_3203	3.776e-13	84.0	COG2931@1|root,COG2931@2|Bacteria,1G1I0@1117|Cyanobacteria,1HB07@1150|Oscillatoriales	1117|Cyanobacteria	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	He_PIG,HemolysinCabind,Peptidase_M10_C
DYD3_k127_3137954_3	1079460.ATTQ01000016_gene5422	4.316e-73	259.0	COG0500@1|root,COG2226@2|Bacteria,1RGWI@1224|Proteobacteria,2U9MW@28211|Alphaproteobacteria,4BF1H@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	DUF429
DYD3_k127_3137954_4	395965.Msil_0348	1.794e-56	211.0	COG0633@1|root,COG2114@1|root,COG0633@2|Bacteria,COG2114@2|Bacteria,1N5XC@1224|Proteobacteria,2TRGX@28211|Alphaproteobacteria,3N9ZF@45404|Beijerinckiaceae	28211|Alphaproteobacteria	CT	Adenylyl- / guanylyl cyclase, catalytic domain	cyaA	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2,Guanylate_cyc
DYD3_k127_3137954_6	83219.PM02_09590	4.366e-09	68.0	COG0668@1|root,COG0668@2|Bacteria,1MY0I@1224|Proteobacteria,2TSIN@28211|Alphaproteobacteria,3ZUZW@60136|Sulfitobacter	28211|Alphaproteobacteria	M	Mechanosensitive ion channel protein	-	-	-	ko:K22044	-	-	-	-	ko00000,ko02000	1.A.23.3	-	-	MS_channel
DYD3_k127_314735_5	469381.Dpep_1250	6.549e-59	218.0	COG4907@1|root,COG4907@2|Bacteria,3TA8F@508458|Synergistetes	508458|Synergistetes	S	membrane protein (DUF2207)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2207
DYD3_k127_314735_3	1502724.FF80_02280	5.621e-62	218.0	COG1704@1|root,COG1704@2|Bacteria,1MVH0@1224|Proteobacteria,2U6EM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	LemA family	lemA	-	-	ko:K03744	-	-	-	-	ko00000	-	-	-	LemA
DYD3_k127_314735_4	1266998.ATUJ01000008_gene490	8.52e-60	210.0	COG2259@1|root,COG2259@2|Bacteria,1N072@1224|Proteobacteria,2U943@28211|Alphaproteobacteria,2PXAH@265|Paracoccus	28211|Alphaproteobacteria	S	DoxX	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD3_k127_314735_0	420324.KI911985_gene5100	2.281e-155	507.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,1JQU4@119045|Methylobacteriaceae	28211|Alphaproteobacteria	I	PFAM alpha beta hydrolase fold	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1,Hydrolase_4
DYD3_k127_314735_1	509190.Cseg_2074	2.319e-134	441.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQX3@28211|Alphaproteobacteria,2KJ1R@204458|Caulobacterales	204458|Caulobacterales	T	PFAM ATP-binding region ATPase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
DYD3_k127_314735_2	509190.Cseg_2075	3.472e-92	307.0	COG4566@1|root,COG4566@2|Bacteria,1R47Z@1224|Proteobacteria,2TSQS@28211|Alphaproteobacteria,2KIIB@204458|Caulobacterales	204458|Caulobacterales	K	PFAM response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_314735_6	509190.Cseg_2076	2.659e-34	136.0	COG4566@1|root,COG4566@2|Bacteria,1MZ8E@1224|Proteobacteria,2UBRR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_314735_7	1207063.P24_06576	3.016e-18	86.0	COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,2TS19@28211|Alphaproteobacteria,2JQ7S@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen	-	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_lgC,Ribonuc_red_lgN
DYD3_k127_3170967_2	663610.JQKO01000013_gene1792	7.087e-119	395.0	COG2114@1|root,COG4252@1|root,COG2114@2|Bacteria,COG4252@2|Bacteria,1MV1V@1224|Proteobacteria,2TRTY@28211|Alphaproteobacteria,3NA33@45404|Beijerinckiaceae	28211|Alphaproteobacteria	T	CHASE2	cyaD1	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	CHASE2,Guanylate_cyc
DYD3_k127_3170967_1	744980.TRICHSKD4_3508	4.224e-172	587.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	COG2931 RTX toxins and related Ca2 -binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	HemolysinCabind,Hint_2
DYD3_k127_3170967_0	1121127.JAFA01000077_gene6803	1.406e-210	671.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2WH2X@28216|Betaproteobacteria,1KIHC@119060|Burkholderiaceae	28216|Betaproteobacteria	T	Activator of aromatic catabolism	-	-	-	-	-	-	-	-	-	-	-	-	HTH_8,Sigma54_activat,V4R,XylR_N
DYD3_k127_317201_2	322710.Avin_05080	3.001e-167	568.0	COG0457@1|root,COG3071@1|root,COG0457@2|Bacteria,COG3071@2|Bacteria,1MVB8@1224|Proteobacteria,1RPSN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	Cellulose synthase	bcsC	-	-	ko:K20543	-	-	-	-	ko00000,ko02000	1.B.55.3	-	-	BCSC_C,TPR_16,TPR_19,TPR_8
DYD3_k127_317201_16	509190.Cseg_3477	5.97e-25	110.0	2AMDP@1|root,31C94@2|Bacteria,1Q6JF@1224|Proteobacteria,2URSA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	cellulose synthase	-	-	-	-	-	-	-	-	-	-	-	-	Cellsynth_D
DYD3_k127_317201_7	322710.Avin_05060	7.249e-91	319.0	COG3405@1|root,COG3405@2|Bacteria,1MW17@1224|Proteobacteria,1RNEU@1236|Gammaproteobacteria	1236|Gammaproteobacteria	G	Belongs to the glycosyl hydrolase 8 (cellulase D) family	bcsZ	-	3.2.1.4	ko:K01179,ko:K20542	ko00500,ko01100,map00500,map01100	-	R06200,R11307,R11308	-	ko00000,ko00001,ko01000	-	GH5,GH8,GH9	-	Glyco_hydro_8
DYD3_k127_317201_10	1437824.BN940_15051	2.644e-62	223.0	COG2755@1|root,COG2755@2|Bacteria,1NTK7@1224|Proteobacteria,2WAQ7@28216|Betaproteobacteria,3T6E7@506|Alcaligenaceae	28216|Betaproteobacteria	E	lipolytic protein G-D-S-L family	wssF	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_317201_4	1159870.KB907784_gene1562	1.417e-160	518.0	COG1696@1|root,COG1696@2|Bacteria,1MUXN@1224|Proteobacteria,2VISD@28216|Betaproteobacteria,3T4P2@506|Alcaligenaceae	28216|Betaproteobacteria	M	membrane protein involved in D-alanine export	pacA	-	-	ko:K19294	-	-	-	-	ko00000	-	-	-	MBOAT
DYD3_k127_317201_8	1121127.JAFA01000010_gene4017	4.863e-75	265.0	2C7PP@1|root,2Z851@2|Bacteria,1R7AY@1224|Proteobacteria,2WFA0@28216|Betaproteobacteria,1KHZY@119060|Burkholderiaceae	28216|Betaproteobacteria	S	SGNH hydrolase-like domain, acetyltransferase AlgX	-	-	-	-	-	-	-	-	-	-	-	-	ALGX
DYD3_k127_317201_9	454957.IA64_12135	2.112e-65	232.0	COG2755@1|root,COG2755@2|Bacteria,1RDF0@1224|Proteobacteria,1S4J6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	GDSL-like Lipase/Acylhydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
DYD3_k127_317201_1	1500257.JQNM01000010_gene725	8.384e-171	540.0	COG0596@1|root,COG0596@2|Bacteria,1R5ID@1224|Proteobacteria,2U12K@28211|Alphaproteobacteria,4BAZ3@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	X-Pro dipeptidyl-peptidase (S15 family)	-	-	3.4.11.5	ko:K01259	ko00330,map00330	-	R00135	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
DYD3_k127_317201_0	1411123.JQNH01000001_gene529	6.82e-212	676.0	COG0213@1|root,COG0213@2|Bacteria,1MV3H@1224|Proteobacteria,2TS24@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis	-	-	2.4.2.4	ko:K00758	ko00240,ko00983,ko01100,ko05219,map00240,map00983,map01100,map05219	-	R01570,R02484,R08222,R08230	RC00063	ko00000,ko00001,ko01000	-	-	-	Glycos_trans_3N,Glycos_transf_3,PYNP_C
DYD3_k127_317201_5	1411123.JQNH01000001_gene528	8.168e-146	467.0	COG1236@1|root,COG1236@2|Bacteria,1MUDD@1224|Proteobacteria,2TVFM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	exonuclease of the beta-lactamase fold involved in RNA processing	-	-	-	ko:K07576	-	-	-	-	ko00000	-	-	-	Beta-Casp,Lactamase_B,RMMBL
DYD3_k127_317201_11	384765.SIAM614_28462	9.555e-60	209.0	COG1236@1|root,COG1236@2|Bacteria,1MUDD@1224|Proteobacteria,2TVFM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	exonuclease of the beta-lactamase fold involved in RNA processing	-	-	-	ko:K07576	-	-	-	-	ko00000	-	-	-	Beta-Casp,Lactamase_B,RMMBL
DYD3_k127_317201_3	1122604.JONR01000001_gene1697	4.427e-162	529.0	COG3119@1|root,COG3119@2|Bacteria,1MV0B@1224|Proteobacteria,1RRY3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Sulfatase	-	-	3.1.6.6	ko:K01133	-	-	-	-	ko00000,ko01000	-	-	-	DUF4976,Sulfatase
DYD3_k127_317201_6	1333998.M2A_1591	2.341e-126	410.0	COG2175@1|root,COG2175@2|Bacteria,1MV5K@1224|Proteobacteria,2TQTZ@28211|Alphaproteobacteria,4BQDS@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA family	tauD	-	1.14.11.17	ko:K03119,ko:K22303	ko00430,ko00920,map00430,map00920	-	R05320	RC01331	ko00000,ko00001,ko01000	-	-	-	TauD
DYD3_k127_317201_13	1182553.XP_007746879.1	6.482e-54	197.0	2D2N2@1|root,2SNCW@2759|Eukaryota,3A35J@33154|Opisthokonta,3P3D8@4751|Fungi,3QVJK@4890|Ascomycota,20MZU@147545|Eurotiomycetes,3MWYN@451870|Chaetothyriomycetidae	33154|Opisthokonta	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_317201_12	414684.RC1_3446	1.007e-58	229.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,2U8WW@28211|Alphaproteobacteria,2JSKJ@204441|Rhodospirillales	204441|Rhodospirillales	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_317201_14	452637.Oter_3166	5.842e-38	145.0	28H52@1|root,2Z7HQ@2|Bacteria	2|Bacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_3185406_0	1131814.JAFO01000001_gene54	0.0	1114.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3EYN7@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	PQQ-like domain	mxaF	-	1.1.2.8	ko:K00114	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
DYD3_k127_3185406_2	1131814.JAFO01000001_gene53	1.096e-106	354.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2TR8F@28211|Alphaproteobacteria,3EZ39@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_3185406_3	1131814.JAFO01000001_gene52	1.305e-92	313.0	COG1116@1|root,COG1116@2|Bacteria,1MU6C@1224|Proteobacteria,2TS5F@28211|Alphaproteobacteria,3F1CG@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_3185406_7	171693.BN988_02396	2.801e-16	93.0	COG0600@1|root,COG0600@2|Bacteria,1TQ26@1239|Firmicutes,4HCJ7@91061|Bacilli,23JSH@182709|Oceanobacillus	91061|Bacilli	P	Binding-protein-dependent transport system inner membrane component	ssuC	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0016020,GO:0022857,GO:0042908,GO:0042910,GO:0042918,GO:0042959,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944	-	ko:K15554	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	BPD_transp_1
DYD3_k127_3185406_1	426117.M446_5748	6.829e-116	384.0	COG0715@1|root,COG0715@2|Bacteria,1MWUA@1224|Proteobacteria,2TRS0@28211|Alphaproteobacteria,1JTGY@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	NMT1/THI5 like	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
DYD3_k127_3185406_4	78245.Xaut_2670	2.711e-39	153.0	COG3474@1|root,COG3474@2|Bacteria,1MZGS@1224|Proteobacteria,2UCUT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	cytochrome	cycA	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_3185406_6	1380394.JADL01000001_gene2393	1.637e-16	82.0	293FV@1|root,2ZQY8@2|Bacteria,1P7MI@1224|Proteobacteria,2UY9Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3185406_5	1125973.JNLC01000002_gene2072	5.035e-32	127.0	COG1357@1|root,COG1357@2|Bacteria,1N7U9@1224|Proteobacteria,2U0C2@28211|Alphaproteobacteria,3JWM5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pentapeptide repeats (8 copies)	-	-	-	-	-	-	-	-	-	-	-	-	Pentapeptide
DYD3_k127_3225911_2	190650.CC_2370	6.061e-54	194.0	COG2119@1|root,COG2119@2|Bacteria,1RDDV@1224|Proteobacteria,2U7JH@28211|Alphaproteobacteria,2KGMU@204458|Caulobacterales	204458|Caulobacterales	S	Uncharacterized protein family UPF0016	-	-	-	-	-	-	-	-	-	-	-	-	UPF0016
DYD3_k127_3225911_0	402881.Plav_2687	1.092e-150	490.0	COG2271@1|root,COG2271@2|Bacteria,1MWYR@1224|Proteobacteria,2U1SE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Major facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_3225911_1	1121013.P873_10955	7.117e-60	214.0	COG2304@1|root,COG2304@2|Bacteria,1PBVT@1224|Proteobacteria,1TK1K@1236|Gammaproteobacteria,1XAQB@135614|Xanthomonadales	135614|Xanthomonadales	Q	Von willebrand factor, type a	-	-	-	-	-	-	-	-	-	-	-	-	VWA_2
DYD3_k127_3226273_2	450851.PHZ_c1907	8.542e-45	168.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2TUUZ@28211|Alphaproteobacteria,2KHRM@204458|Caulobacterales	204458|Caulobacterales	K	Sigma-70, region 4	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_3226273_3	349521.HCH_03902	1.663e-27	123.0	COG1073@1|root,COG1073@2|Bacteria,1R7H5@1224|Proteobacteria	1224|Proteobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3226273_1	1380394.JADL01000010_gene4367	1.002e-74	261.0	COG1947@1|root,COG1947@2|Bacteria,1MVU3@1224|Proteobacteria,2TUFV@28211|Alphaproteobacteria,2JRVD@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol	ispE	-	2.7.1.148	ko:K00919	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05634	RC00002,RC01439	ko00000,ko00001,ko00002,ko01000	-	-	-	GHMP_kinases_C,GHMP_kinases_N
DYD3_k127_3226273_0	1089552.KI911559_gene1998	1.625e-115	393.0	COG0457@1|root,COG0457@2|Bacteria,1MYB8@1224|Proteobacteria,2TQV5@28211|Alphaproteobacteria,2JPTZ@204441|Rhodospirillales	204441|Rhodospirillales	U	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_19,TPR_2,TPR_4,TPR_6,TPR_8
DYD3_k127_3234964_15	1384054.N790_11375	4.518e-12	76.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RPY8@1236|Gammaproteobacteria,1X47V@135614|Xanthomonadales	135614|Xanthomonadales	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3234964_8	1390370.O203_13695	1.807e-61	239.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RPY8@1236|Gammaproteobacteria,1YEK4@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3234964_2	1333998.M2A_0542	2.247e-145	474.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,2U2TN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_3234964_7	414684.RC1_3446	3.865e-69	262.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,2U8WW@28211|Alphaproteobacteria,2JSKJ@204441|Rhodospirillales	204441|Rhodospirillales	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3234964_6	1282876.BAOK01000002_gene330	1.903e-72	258.0	COG4447@1|root,COG4447@2|Bacteria,1RCNG@1224|Proteobacteria,2U748@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Photosynthesis system II assembly factor YCF48	-	-	-	-	-	-	-	-	-	-	-	-	PSII_BNR
DYD3_k127_3234964_5	1248916.ANFY01000003_gene1029	2.511e-94	315.0	COG1028@1|root,COG1028@2|Bacteria,1MUPX@1224|Proteobacteria,2TT6C@28211|Alphaproteobacteria,2K269@204457|Sphingomonadales	204457|Sphingomonadales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_3234964_4	1282876.BAOK01000002_gene332	6.417e-127	418.0	COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,2TRN9@28211|Alphaproteobacteria,4BQIN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	G	Glucose / Sorbosone dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	GSDH
DYD3_k127_3234964_9	1121033.AUCF01000001_gene2246	2.81e-38	149.0	COG0494@1|root,COG0494@2|Bacteria,1N11E@1224|Proteobacteria,2U9YU@28211|Alphaproteobacteria,2JUSE@204441|Rhodospirillales	204441|Rhodospirillales	L	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_3234964_12	1469607.KK073768_gene1135	1.856e-26	112.0	COG3668@1|root,COG3668@2|Bacteria	2|Bacteria	D	Plasmid stabilization system	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_3234964_11	1121022.ABENE_18005	1.57e-26	111.0	COG3609@1|root,COG3609@2|Bacteria,1N05M@1224|Proteobacteria,2UDPI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	-	-	-	-	-	-	-	-	-	-	-	-	ParD_antitoxin
DYD3_k127_3234964_1	316058.RPB_4110	3.017e-171	559.0	COG1215@1|root,COG1215@2|Bacteria,1MX08@1224|Proteobacteria,2TR9F@28211|Alphaproteobacteria,3JSZH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family group 2	-	-	-	ko:K20327	ko02024,map02024	-	-	-	ko00000,ko00001,ko01003	-	GT2	-	Glyco_tranf_2_3,Glyco_trans_2_3,T2SSE_N
DYD3_k127_3234964_14	690850.Desaf_0718	1.501e-17	87.0	COG2204@1|root,COG2204@2|Bacteria,1P58Q@1224|Proteobacteria,430GN@68525|delta/epsilon subdivisions,2WVMH@28221|Deltaproteobacteria,2MCHQ@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	response regulator, receiver	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD3_k127_3234964_13	1131814.JAFO01000001_gene176	1.93e-26	119.0	2BCV0@1|root,326FP@2|Bacteria,1MYXP@1224|Proteobacteria,2U5PU@28211|Alphaproteobacteria,3F1EB@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	-	ko:K20326	ko02024,map02024	-	-	-	ko00000,ko00001	-	-	-	Phenol_MetA_deg
DYD3_k127_3234964_3	1415780.JPOG01000001_gene3179	1.345e-134	439.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,1RN38@1236|Gammaproteobacteria,1X3MA@135614|Xanthomonadales	135614|Xanthomonadales	I	acid) synthase	phbC	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_3234964_0	1429916.X566_04135	4.679e-288	894.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2U35B@28211|Alphaproteobacteria,3JVFF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxyl transferase domain	-	-	6.4.1.4	ko:K01969	ko00280,ko01100,map00280,map01100	M00036	R04138	RC00367,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
DYD3_k127_3234964_10	1415780.JPOG01000001_gene661	3.511e-29	122.0	COG4770@1|root,COG4770@2|Bacteria,1RJYU@1224|Proteobacteria,1S6PF@1236|Gammaproteobacteria,1X6Y8@135614|Xanthomonadales	135614|Xanthomonadales	I	Biotin-requiring enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl
DYD3_k127_3236834_7	1266998.ATUJ01000006_gene80	4.489e-07	52.0	COG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,2U9BQ@28211|Alphaproteobacteria,2PX4P@265|Paracoccus	28211|Alphaproteobacteria	K	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	rpoZ	-	2.7.7.6	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb6
DYD3_k127_3236834_5	1122180.Lokhon_00549	1.962e-21	94.0	COG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,2U9BQ@28211|Alphaproteobacteria,2P8Z8@245186|Loktanella	28211|Alphaproteobacteria	K	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	rpoZ	-	2.7.7.6	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb6
DYD3_k127_3236834_4	1114964.L485_18135	6.993e-29	118.0	COG3077@1|root,COG3077@2|Bacteria,1NA1R@1224|Proteobacteria,2USHA@28211|Alphaproteobacteria,2K7GM@204457|Sphingomonadales	204457|Sphingomonadales	L	RelB antitoxin	-	-	-	ko:K07473	-	-	-	-	ko00000,ko02048	-	-	-	RelB
DYD3_k127_3236834_0	469381.Dpep_0998	2.913e-101	338.0	COG1432@1|root,COG1432@2|Bacteria,3TBYR@508458|Synergistetes	508458|Synergistetes	S	NYN domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN,OST-HTH
DYD3_k127_3236834_6	1282360.ABAC460_05580	7.389e-13	80.0	2F6ZB@1|root,33ZF9@2|Bacteria,1NYFX@1224|Proteobacteria	1224|Proteobacteria	S	Domain of unknown function (DUF4279)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4279
DYD3_k127_3236834_3	1207063.P24_10780	2.883e-44	166.0	COG0801@1|root,COG0801@2|Bacteria,1MZH8@1224|Proteobacteria,2U8D6@28211|Alphaproteobacteria,2JTNY@204441|Rhodospirillales	204441|Rhodospirillales	H	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	folK	-	2.7.6.3	ko:K00950	ko00790,ko01100,map00790,map01100	M00126,M00841	R03503	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	HPPK
DYD3_k127_3236834_1	1205680.CAKO01000029_gene5058	8.57e-81	274.0	COG1432@1|root,COG1432@2|Bacteria,1MUAE@1224|Proteobacteria,2TU5M@28211|Alphaproteobacteria,2JQQ5@204441|Rhodospirillales	204441|Rhodospirillales	S	NYN domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN
DYD3_k127_3236834_2	78245.Xaut_3835	2.29e-57	213.0	COG1573@1|root,COG1573@2|Bacteria,1MW91@1224|Proteobacteria,2TSUP@28211|Alphaproteobacteria,3EYC0@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	Uracil DNA glycosylase superfamily	ung	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_3261134_11	426117.M446_5699	9.881e-07	50.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,1JTKB@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead	-	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
DYD3_k127_3261134_6	1121033.AUCF01000012_gene950	3.384e-77	268.0	COG1319@1|root,COG1319@2|Bacteria,1N4RF@1224|Proteobacteria,2U27S@28211|Alphaproteobacteria,2JSEM@204441|Rhodospirillales	204441|Rhodospirillales	C	FAD binding domain in molybdopterin dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_5
DYD3_k127_3261134_3	1207063.P24_13273	2.322e-93	331.0	COG2080@1|root,COG3427@1|root,COG2080@2|Bacteria,COG3427@2|Bacteria,1MXN3@1224|Proteobacteria,2TUK6@28211|Alphaproteobacteria,2JSCH@204441|Rhodospirillales	204441|Rhodospirillales	C	[2Fe-2S] binding domain	-	-	-	-	-	-	-	-	-	-	-	-	COXG,Fer2,Fer2_2
DYD3_k127_3261134_9	1121033.AUCF01000012_gene955	1.28e-50	184.0	COG1846@1|root,COG1846@2|Bacteria,1N23I@1224|Proteobacteria,2UCXD@28211|Alphaproteobacteria,2JX43@204441|Rhodospirillales	204441|Rhodospirillales	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR
DYD3_k127_3261134_4	1121033.AUCF01000012_gene956	1.831e-87	305.0	COG0074@1|root,COG0074@2|Bacteria,1MX67@1224|Proteobacteria,2U0AT@28211|Alphaproteobacteria,2JU3W@204441|Rhodospirillales	204441|Rhodospirillales	C	Protein of unknown function (DUF1116)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1116
DYD3_k127_3261134_2	1245469.S58_43450	1.481e-98	332.0	COG0834@1|root,COG0834@2|Bacteria,1P59E@1224|Proteobacteria,2TVDA@28211|Alphaproteobacteria,3K627@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_3261134_5	391038.Bphy_4557	2.991e-79	271.0	COG0765@1|root,COG0765@2|Bacteria,1RDWI@1224|Proteobacteria,2W2IW@28216|Betaproteobacteria,1K61U@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1
DYD3_k127_3261134_7	391038.Bphy_4556	6.653e-77	263.0	COG0765@1|root,COG0765@2|Bacteria,1R6B2@1224|Proteobacteria,2W3SN@28216|Betaproteobacteria,1K63G@119060|Burkholderiaceae	28216|Betaproteobacteria	P	amino acid ABC transporter	-	-	-	ko:K02029	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	BPD_transp_1
DYD3_k127_3261134_1	1245469.S58_43420	3.453e-110	373.0	COG1126@1|root,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,2TQX2@28211|Alphaproteobacteria,3JU6J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	glnQ	-	3.6.3.21	ko:K02028,ko:K02029,ko:K09972,ko:K10004	ko02010,ko02020,map02010,map02020	M00230,M00232,M00236	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.17,3.A.1.3.18,3.A.1.3.19,3.A.1.3.4,3.A.1.3.7,3.A.1.3.8	-	-	ABC_tran
DYD3_k127_3261134_10	1168059.KB899087_gene4092	7.054e-32	130.0	COG0346@1|root,COG0346@2|Bacteria,1NAB5@1224|Proteobacteria,2UG1S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_3261134_0	68260.JOAY01000002_gene5152	1.694e-112	373.0	COG1126@1|root,COG1126@2|Bacteria,2GIZW@201174|Actinobacteria	201174|Actinobacteria	E	ABC transporter, ATP-binding protein	atrC	-	3.6.3.21	ko:K02028	-	M00236	-	-	ko00000,ko00002,ko01000,ko02000	3.A.1.3	-	-	ABC_tran
DYD3_k127_3261134_8	265072.Mfla_2562	3.002e-73	248.0	COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2VJ0X@28216|Betaproteobacteria,2KKZD@206350|Nitrosomonadales	28216|Betaproteobacteria	E	PFAM glutamine synthetase catalytic region	-	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_3267966_2	1120792.JAFV01000001_gene1598	5.085e-14	72.0	COG2197@1|root,COG2197@2|Bacteria,1MVNV@1224|Proteobacteria,2TTK7@28211|Alphaproteobacteria,36Y44@31993|Methylocystaceae	28211|Alphaproteobacteria	KT	helix_turn_helix, Lux Regulon	MA20_23080	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_3267966_0	1042375.AFPL01000026_gene3693	2.91e-57	224.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RPY8@1236|Gammaproteobacteria,4645D@72275|Alteromonadaceae	1236|Gammaproteobacteria	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3267966_3	1236959.BAMT01000002_gene2199	2.494e-05	55.0	COG2259@1|root,COG2259@2|Bacteria,1MZVP@1224|Proteobacteria,2VU3K@28216|Betaproteobacteria,2KP7J@206350|Nitrosomonadales	206350|Nitrosomonadales	S	DoxX	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD3_k127_3267966_1	1122604.JONR01000001_gene1697	8.672e-45	169.0	COG3119@1|root,COG3119@2|Bacteria,1MV0B@1224|Proteobacteria,1RRY3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Sulfatase	-	-	3.1.6.6	ko:K01133	-	-	-	-	ko00000,ko01000	-	-	-	DUF4976,Sulfatase
DYD3_k127_327789_1	717785.HYPMC_1666	6.23e-152	486.0	COG3491@1|root,COG3491@2|Bacteria,1MUNT@1224|Proteobacteria,2TU3Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Belongs to the iron ascorbate-dependent oxidoreductase family	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy,DIOX_N
DYD3_k127_327789_2	1038859.AXAU01000010_gene1813	3.131e-102	343.0	COG0491@1|root,COG0491@2|Bacteria,1N1ZW@1224|Proteobacteria,2TUMN@28211|Alphaproteobacteria,3JTZK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_327789_0	1298858.AUEL01000007_gene2334	1.047e-153	490.0	COG0596@1|root,COG0596@2|Bacteria,1QU30@1224|Proteobacteria,2TSNY@28211|Alphaproteobacteria,43NFI@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	pip2	-	3.5.1.101	ko:K18457	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_327789_3	1298858.AUEL01000007_gene2335	1.159e-75	257.0	COG2197@1|root,COG2197@2|Bacteria,1MXYY@1224|Proteobacteria,2U6NN@28211|Alphaproteobacteria,43PXG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	ko:K07782	ko02020,ko02024,ko02026,map02020,map02024,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	Autoind_bind,GerE
DYD3_k127_3289993_4	1120960.ATXG01000004_gene1704	9.185e-26	125.0	COG2909@1|root,COG2909@2|Bacteria,2IBM2@201174|Actinobacteria,4FTD5@85023|Microbacteriaceae	201174|Actinobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	ko:K03556	-	-	-	-	ko00000,ko03000	-	-	-	AAA_16,AAA_22,GerE
DYD3_k127_3289993_5	1156935.QWE_04623	4.993e-22	108.0	COG2207@1|root,COG2207@2|Bacteria,1R4MG@1224|Proteobacteria,2TVBU@28211|Alphaproteobacteria,4BAPH@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Arabinose-binding domain of AraC transcription regulator, N-term	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_3289993_2	317655.Sala_1855	3.598e-70	250.0	COG1028@1|root,COG1028@2|Bacteria,1R6PG@1224|Proteobacteria,2U54K@28211|Alphaproteobacteria,2K6KY@204457|Sphingomonadales	204457|Sphingomonadales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_3289993_0	1085623.GNIT_1884	1.522e-138	458.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,1RN8H@1236|Gammaproteobacteria,464MQ@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_3289993_3	414684.RC1_3446	1.648e-66	255.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,2U8WW@28211|Alphaproteobacteria,2JSKJ@204441|Rhodospirillales	204441|Rhodospirillales	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3289993_1	488538.SAR116_2012	9.624e-133	424.0	COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,2TT67@28211|Alphaproteobacteria,4BPTE@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily	adhI	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0008150,GO:0008152,GO:0015945,GO:0034308,GO:0044281,GO:0044424,GO:0044464,GO:0071704,GO:1901615	1.1.1.1,1.1.1.284	ko:K00121	ko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_3322432_0	1211115.ALIQ01000232_gene4387	0.0	1014.0	COG0550@1|root,COG0550@2|Bacteria,1MUFZ@1224|Proteobacteria,2TRGN@28211|Alphaproteobacteria,3NAC7@45404|Beijerinckiaceae	28211|Alphaproteobacteria	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	topA	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	Topoisom_bac,Toprim,Toprim_C_rpt,zf-C4_Topoisom
DYD3_k127_3322432_5	1150469.RSPPHO_01137	1.819e-123	406.0	COG0758@1|root,COG0758@2|Bacteria,1MVF6@1224|Proteobacteria,2TRQE@28211|Alphaproteobacteria,2JPC1@204441|Rhodospirillales	204441|Rhodospirillales	LU	Rossmann fold nucleotide-binding protein involved in DNA uptake	dprA	-	-	ko:K04096	-	-	-	-	ko00000	-	-	-	DNA_processg_A
DYD3_k127_3322432_4	1122604.JONR01000015_gene158	1.349e-151	484.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,1RTQR@1236|Gammaproteobacteria,1X9H0@135614|Xanthomonadales	135614|Xanthomonadales	S	Nitronate monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	NMO
DYD3_k127_3322432_8	640081.Dsui_0978	4.518e-50	184.0	COG3917@1|root,COG3917@2|Bacteria,1RDNQ@1224|Proteobacteria,2VQJ1@28216|Betaproteobacteria,2KZTF@206389|Rhodocyclales	206389|Rhodocyclales	Q	DSBA-like thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	DSBA
DYD3_k127_3322432_6	1569209.BBPH01000073_gene760	2.637e-77	263.0	COG0344@1|root,COG0344@2|Bacteria,1RD4Z@1224|Proteobacteria,2U7BZ@28211|Alphaproteobacteria,2PW90@265|Paracoccus	28211|Alphaproteobacteria	I	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP	plsY	-	2.3.1.15	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	G3P_acyltransf
DYD3_k127_3322432_3	1244869.H261_03001	3.517e-155	513.0	COG0044@1|root,COG0044@2|Bacteria,1MVXY@1224|Proteobacteria,2TSTM@28211|Alphaproteobacteria,2JPYU@204441|Rhodospirillales	204441|Rhodospirillales	F	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily	pyrC	-	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1
DYD3_k127_3322432_2	402881.Plav_2836	9.906e-160	516.0	COG0540@1|root,COG0540@2|Bacteria,1MWAB@1224|Proteobacteria,2TRHP@28211|Alphaproteobacteria,1JN0H@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	pyrB	GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.3.2	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R01397	RC00064,RC02850	ko00000,ko00001,ko00002,ko01000	-	-	-	OTCace,OTCace_N
DYD3_k127_3322432_7	1207063.P24_09716	1.574e-71	256.0	COG1335@1|root,COG1335@2|Bacteria,1RE3C@1224|Proteobacteria,2U0GC@28211|Alphaproteobacteria,2JSP8@204441|Rhodospirillales	204441|Rhodospirillales	Q	COG1335 Amidases related to nicotinamidase	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_3322432_9	266835.14023553	2.674e-32	128.0	COG3801@1|root,COG3801@2|Bacteria,1ND42@1224|Proteobacteria,2UDA5@28211|Alphaproteobacteria,43M9Y@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	YjbR	-	-	-	-	-	-	-	-	-	-	-	-	YjbR
DYD3_k127_3322432_1	1532558.JL39_04010	1.981e-234	732.0	COG3177@1|root,COG3177@2|Bacteria,1MXWY@1224|Proteobacteria,2U3KT@28211|Alphaproteobacteria,4BCWU@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Fic/DOC family	-	-	-	-	-	-	-	-	-	-	-	-	Fic
DYD3_k127_3322432_10	983920.Y88_2912	2.461e-31	130.0	2CQDU@1|root,32SKZ@2|Bacteria,1N111@1224|Proteobacteria,2UD30@28211|Alphaproteobacteria,2KBEM@204457|Sphingomonadales	204457|Sphingomonadales	S	Antitoxin ParD	-	-	-	-	-	-	-	-	-	-	-	-	ParD
DYD3_k127_3322432_13	160492.XF_2032	4.15e-11	64.0	COG3668@1|root,COG3668@2|Bacteria,1RKAK@1224|Proteobacteria,1SD8T@1236|Gammaproteobacteria,1XAVP@135614|Xanthomonadales	135614|Xanthomonadales	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_3322432_11	491916.RHECIAT_PC0000823	3.485e-19	93.0	COG3668@1|root,COG3668@2|Bacteria,1RKAK@1224|Proteobacteria,2UAS9@28211|Alphaproteobacteria,4BK56@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_3322432_12	441620.Mpop_0479	1.324e-11	64.0	COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1P76X@1224|Proteobacteria,2U16U@28211|Alphaproteobacteria,1JRW2@119045|Methylobacteriaceae	28211|Alphaproteobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
DYD3_k127_3330260_6	426117.M446_2092	3.075e-78	271.0	COG4222@1|root,COG4625@1|root,COG4222@2|Bacteria,COG4625@2|Bacteria,1N2PM@1224|Proteobacteria,2TR8N@28211|Alphaproteobacteria,1JXNI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,Phytase-like
DYD3_k127_3330260_7	402881.Plav_1410	3.191e-70	244.0	COG1051@1|root,COG1051@2|Bacteria,1REBW@1224|Proteobacteria,2U72I@28211|Alphaproteobacteria,1JNX7@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Nudix N-terminal	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX,Nudix_N_2
DYD3_k127_3330260_12	438753.AZC_1132	4.249e-51	195.0	COG4235@1|root,COG4235@2|Bacteria,1MY4J@1224|Proteobacteria,2TSI7@28211|Alphaproteobacteria,3EY9M@335928|Xanthobacteraceae	28211|Alphaproteobacteria	O	Cytochrome c-type biogenesis protein	cycH	-	-	ko:K02200	-	-	-	-	ko00000	-	-	-	TPR_16,TPR_19
DYD3_k127_3330260_14	1380394.JADL01000002_gene1125	7.595e-40	161.0	COG3088@1|root,COG3088@2|Bacteria,1MZZ5@1224|Proteobacteria,2U96P@28211|Alphaproteobacteria,2JSQ1@204441|Rhodospirillales	204441|Rhodospirillales	P	subunit of a heme lyase	-	-	-	ko:K02200	-	-	-	-	ko00000	-	-	-	CcmH
DYD3_k127_3330260_11	1121033.AUCF01000040_gene808	5.903e-53	192.0	COG0526@1|root,COG0526@2|Bacteria,1RI3N@1224|Proteobacteria,2TSEW@28211|Alphaproteobacteria,2JSVQ@204441|Rhodospirillales	204441|Rhodospirillales	CO	Redoxin	ccmG	-	-	ko:K02199	-	-	-	-	ko00000,ko03110	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_3330260_1	1207063.P24_03955	1.056e-254	810.0	COG1138@1|root,COG1138@2|Bacteria,1MUQS@1224|Proteobacteria,2TRNG@28211|Alphaproteobacteria,2JR5K@204441|Rhodospirillales	204441|Rhodospirillales	O	COG1138 Cytochrome c biogenesis factor	ccmF	-	-	ko:K02198	-	-	-	-	ko00000,ko02000	9.B.14.1	-	-	CcmF_C,Cytochrom_C_asm
DYD3_k127_3330260_13	78245.Xaut_1656	5.285e-45	171.0	COG2332@1|root,COG2332@2|Bacteria,1RHN5@1224|Proteobacteria,2U99J@28211|Alphaproteobacteria,3EZG7@335928|Xanthobacteraceae	28211|Alphaproteobacteria	O	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH	ccmE	GO:0003674,GO:0003824,GO:0008150,GO:0009987,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043933,GO:0044085,GO:0065003,GO:0071840	-	ko:K02197	-	-	-	-	ko00000	-	-	-	CcmE
DYD3_k127_3330260_15	1110502.TMO_3080	8.327e-06	50.0	COG3114@1|root,COG3114@2|Bacteria	2|Bacteria	U	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes	ccmD	GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678	-	ko:K02196	ko02010,map02010	-	-	-	ko00000,ko00001,ko02000	3.A.1.107	-	iB21_1397.B21_02084,iBWG_1329.BWG_1971,iE2348C_1286.E2348C_2342,iEC042_1314.EC042_2439,iEC55989_1330.EC55989_2451,iECABU_c1320.ECABU_c25320,iECBD_1354.ECBD_1462,iECB_1328.ECB_02125,iECDH10B_1368.ECDH10B_2355,iECDH1ME8569_1439.ECDH1ME8569_2133,iECD_1391.ECD_02125,iECED1_1282.ECED1_2663,iECH74115_1262.ECH74115_3335,iECIAI1_1343.ECIAI1_2280,iECIAI39_1322.ECIAI39_2336,iECNA114_1301.ECNA114_2290,iECO103_1326.ECO103_2673,iECO111_1330.ECO111_2934,iECO26_1355.ECO26_3124,iECOK1_1307.ECOK1_2432,iECP_1309.ECP_2238,iECS88_1305.ECS88_2345,iECSE_1348.ECSE_2466,iECSF_1327.ECSF_2079,iECSP_1301.ECSP_3077,iECUMN_1333.ECUMN_2533,iECs_1301.ECs3087,iEKO11_1354.EKO11_1558,iETEC_1333.ETEC_2332,iEcDH1_1363.EcDH1_1461,iEcE24377_1341.EcE24377A_2497,iEcHS_1320.EcHS_A2336,iEcSMS35_1347.EcSMS35_2346,iEcolC_1368.EcolC_1452,iJO1366.b2198,iLF82_1304.LF82_0276,iNRG857_1313.NRG857_11155,iSDY_1059.SDY_0880,iSFV_1184.SFV_2274,iSF_1195.SF2282,iSSON_1240.SSON_2256,iS_1188.S2412,iUMN146_1321.UM146_05815,iUMNK88_1353.UMNK88_2745,iUTI89_1310.UTI89_C2476,iY75_1357.Y75_RS11500,iZ_1308.Z3455,ic_1306.c2735	CcmD
DYD3_k127_3330260_5	269796.Rru_A0038	6.767e-104	342.0	COG0755@1|root,COG0755@2|Bacteria,1MU61@1224|Proteobacteria,2TSW8@28211|Alphaproteobacteria,2JR32@204441|Rhodospirillales	204441|Rhodospirillales	O	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes	ccmC	-	-	ko:K02195	ko02010,map02010	M00259	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.107	-	-	Cytochrom_C_asm
DYD3_k127_3330260_8	1207063.P24_03975	1.306e-63	226.0	COG2386@1|root,COG2386@2|Bacteria,1NJB0@1224|Proteobacteria,2TUSG@28211|Alphaproteobacteria,2JR0S@204441|Rhodospirillales	204441|Rhodospirillales	O	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes	ccmB	-	-	ko:K02194	ko02010,map02010	M00259	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.107	-	-	CcmB
DYD3_k127_3330260_9	1123072.AUDH01000001_gene3165	1.216e-61	218.0	COG4133@1|root,COG4133@2|Bacteria,1MZPC@1224|Proteobacteria,2TVBT@28211|Alphaproteobacteria,2JRQJ@204441|Rhodospirillales	204441|Rhodospirillales	O	once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system	ccmA	-	3.6.3.41	ko:K02193	ko02010,map02010	M00259	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.107	-	-	ABC_tran
DYD3_k127_3330260_4	1144275.COCOR_06057	4.497e-105	350.0	COG1024@1|root,COG1024@2|Bacteria,1NDT7@1224|Proteobacteria,42PZ0@68525|delta/epsilon subdivisions,2WM9Y@28221|Deltaproteobacteria,2YUF3@29|Myxococcales	28221|Deltaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD3_k127_3330260_0	1380394.JADL01000002_gene1094	0.0	1279.0	COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,2TT3T@28211|Alphaproteobacteria,2JQQN@204441|Rhodospirillales	204441|Rhodospirillales	C	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate	acnA	-	4.2.1.3	ko:K01681	ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00173,M00740	R01324,R01325,R01900	RC00497,RC00498,RC00618	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase,Aconitase_C
DYD3_k127_3330260_10	944435.AXAJ01000005_gene3443	5.455e-56	201.0	COG2318@1|root,COG2318@2|Bacteria,1RI94@1224|Proteobacteria,2W3BY@28216|Betaproteobacteria,1K4H1@119060|Burkholderiaceae	28216|Betaproteobacteria	S	PFAM DinB family protein	-	-	-	-	-	-	-	-	-	-	-	-	DinB
DYD3_k127_3330260_3	1238182.C882_0958	1.972e-127	413.0	COG2877@1|root,COG2877@2|Bacteria,1MV91@1224|Proteobacteria,2TRJX@28211|Alphaproteobacteria,2JP8G@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the KdsA family	kdsA	-	2.5.1.55	ko:K01627	ko00540,ko01100,map00540,map01100	M00063	R03254	RC00435	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	DAHP_synth_1
DYD3_k127_3330260_2	351746.Pput_3917	1.495e-210	677.0	COG3563@1|root,COG3563@2|Bacteria,1MW0T@1224|Proteobacteria,1RPMS@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	Capsule polysaccharide	-	-	-	ko:K07266	-	-	-	-	ko00000	-	-	-	Capsule_synth
DYD3_k127_3330260_16	1123227.KB899340_gene1414	4.522e-05	49.0	COG3562@1|root,COG3562@2|Bacteria,1MUZT@1224|Proteobacteria,2TQM3@28211|Alphaproteobacteria,2JV60@204441|Rhodospirillales	204441|Rhodospirillales	M	Capsule polysaccharide biosynthesis protein	-	-	-	ko:K07265	-	-	-	-	ko00000	-	-	-	Capsule_synth
DYD3_k127_3334965_26	1392838.AWNM01000016_gene3328	1.778e-41	159.0	COG1652@1|root,COG1652@2|Bacteria,1RD8K@1224|Proteobacteria,2VR7C@28216|Betaproteobacteria,3T452@506|Alcaligenaceae	28216|Betaproteobacteria	S	Lysin motif	ygaU	-	-	-	-	-	-	-	-	-	-	-	BON,LysM
DYD3_k127_3334965_31	546267.NEIPOLOT_00807	1.374e-16	91.0	2CGJJ@1|root,341EZ@2|Bacteria,1NXFC@1224|Proteobacteria,2W356@28216|Betaproteobacteria,2KT6P@206351|Neisseriales	206351|Neisseriales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3334965_2	1150469.RSPPHO_01901	9.483e-235	748.0	COG0751@1|root,COG0751@2|Bacteria,1MV2F@1224|Proteobacteria,2TQKJ@28211|Alphaproteobacteria,2JPJH@204441|Rhodospirillales	204441|Rhodospirillales	J	Glycyl-tRNA synthetase beta subunit	glyS	-	6.1.1.14	ko:K01879	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_1,tRNA_synt_2f
DYD3_k127_3334965_0	864069.MicloDRAFT_00068170	0.0	1332.0	COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2TR3C@28211|Alphaproteobacteria,1JS5H@119045|Methylobacteriaceae	28211|Alphaproteobacteria	G	Belongs to the PEP-utilizing enzyme family	ppdK	-	2.7.9.1	ko:K01006	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200	M00169,M00171,M00172,M00173	R00206	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PEP-utilizers_C,PPDK_N
DYD3_k127_3334965_25	118161.KB235922_gene333	1.092e-41	162.0	COG3917@1|root,COG3917@2|Bacteria,1GE7Z@1117|Cyanobacteria	1117|Cyanobacteria	Q	DSBA-like thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	DSBA
DYD3_k127_3334965_12	1244869.H261_16825	1.974e-107	366.0	COG1703@1|root,COG1703@2|Bacteria,1R44P@1224|Proteobacteria,2TW2E@28211|Alphaproteobacteria,2JR6W@204441|Rhodospirillales	204441|Rhodospirillales	E	periplasmic protein kinase ArgK and related GTPases of G3E family	-	-	-	ko:K07588	-	-	-	-	ko00000,ko01000	-	-	-	ArgK
DYD3_k127_3334965_24	247634.GPB2148_3151	4.791e-46	176.0	COG0730@1|root,COG0730@2|Bacteria,1R7YW@1224|Proteobacteria,1S6TR@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	membrane transporter protein	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
DYD3_k127_3334965_1	1122137.AQXF01000005_gene1255	2.273e-248	779.0	COG3653@1|root,COG3653@2|Bacteria,1MWWY@1224|Proteobacteria,2TSZZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	COG3653 N-acyl-D-aspartate D-glutamate deacylase	MA20_22865	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_3
DYD3_k127_3334965_22	1206733.BAGC01000039_gene1306	6.843e-58	213.0	COG0300@1|root,COG0300@2|Bacteria,2I2R6@201174|Actinobacteria,4FUHU@85025|Nocardiaceae	201174|Actinobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_3334965_28	1382303.JPOM01000001_gene1031	2.153e-39	155.0	COG5350@1|root,COG5350@2|Bacteria,1RDTX@1224|Proteobacteria,2U71X@28211|Alphaproteobacteria,2KIWC@204458|Caulobacterales	204458|Caulobacterales	S	protein tyrosine phosphatase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3334965_32	1479238.JQMZ01000001_gene2547	2.409e-08	61.0	28YWP@1|root,2ZKPT@2|Bacteria,1PBQP@1224|Proteobacteria,2UW48@28211|Alphaproteobacteria,440FH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3334965_14	1123240.ATVO01000006_gene1605	3.035e-102	341.0	COG3000@1|root,COG3000@2|Bacteria,1NR7X@1224|Proteobacteria,2TT68@28211|Alphaproteobacteria,2K2GA@204457|Sphingomonadales	204457|Sphingomonadales	I	sterol desaturase	-	-	-	-	-	-	-	-	-	-	-	-	FA_hydroxylase
DYD3_k127_3334965_6	1110502.TMO_0948	4.384e-127	422.0	COG0477@1|root,COG2814@2|Bacteria,1MX1Q@1224|Proteobacteria,2TY3F@28211|Alphaproteobacteria,2JZ1A@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_3334965_21	331869.BAL199_02254	1.758e-58	228.0	COG2345@1|root,COG2345@2|Bacteria,1RDXT@1224|Proteobacteria,2U1K1@28211|Alphaproteobacteria,4BQJ6@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_11,HTH_5,MarR_2,PadR,Replic_Relax
DYD3_k127_3334965_13	450851.PHZ_c1372	1.477e-105	352.0	COG3000@1|root,COG3000@2|Bacteria,1NR7X@1224|Proteobacteria,2TT68@28211|Alphaproteobacteria,2KG0P@204458|Caulobacterales	204458|Caulobacterales	I	Fatty acid hydroxylase	-	-	-	-	-	-	-	-	-	-	-	-	FA_hydroxylase
DYD3_k127_3334965_4	631454.N177_0349	2.814e-195	620.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,1JNFK@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	Aminotransferase class-III	-	-	2.6.1.96	ko:K16871	ko00250,ko00650,ko01100,ko01120,map00250,map00650,map01100,map01120	M00027	R10178	RC00008,RC00062	ko00000,ko00001,ko00002,ko01000	-	-	-	Aminotran_3
DYD3_k127_3334965_20	1160718.SU9_05036	3.093e-68	237.0	COG1309@1|root,COG1309@2|Bacteria,2H8WH@201174|Actinobacteria	201174|Actinobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
DYD3_k127_3334965_11	1333998.M2A_0141	3.544e-112	369.0	COG0491@1|root,COG0491@2|Bacteria,1N22F@1224|Proteobacteria,2U2V5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_3334965_19	402881.Plav_1560	2.018e-73	262.0	COG2866@1|root,COG2866@2|Bacteria,1N6CX@1224|Proteobacteria,2U3MG@28211|Alphaproteobacteria	1224|Proteobacteria	E	Protein of unknown function (DUF2817)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2817
DYD3_k127_3334965_8	639283.Snov_0270	3.784e-123	398.0	COG1028@1|root,COG1028@2|Bacteria,1MVT2@1224|Proteobacteria,2TQKU@28211|Alphaproteobacteria,3EXWC@335928|Xanthobacteraceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	fixR	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_3334965_17	247634.GPB2148_974	5.577e-88	301.0	COG0053@1|root,COG0053@2|Bacteria,1MUDS@1224|Proteobacteria,1RNS2@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family	fieF	GO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005385,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006829,GO:0006873,GO:0006875,GO:0006876,GO:0006882,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015086,GO:0015093,GO:0015291,GO:0015318,GO:0015341,GO:0015562,GO:0015684,GO:0015691,GO:0016020,GO:0019725,GO:0022804,GO:0022857,GO:0022883,GO:0022890,GO:0030001,GO:0030003,GO:0034220,GO:0034755,GO:0042592,GO:0042802,GO:0044464,GO:0046583,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055069,GO:0055073,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070574,GO:0070838,GO:0071577,GO:0071944,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:1903874	-	ko:K13283	-	-	-	-	ko00000,ko02000	2.A.4.7.1	-	-	Cation_efflux,ZT_dimer
DYD3_k127_3334965_18	1238182.C882_1345	2.971e-76	276.0	COG0259@1|root,COG0259@2|Bacteria,1NZUU@1224|Proteobacteria,2TT1U@28211|Alphaproteobacteria,2JRUZ@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP)	pdxH	-	1.4.3.5	ko:K00275	ko00750,ko01100,ko01120,map00750,map01100,map01120	M00124	R00277,R00278,R01710,R01711	RC00048,RC00116	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_phzG_C,Putative_PNPOx
DYD3_k127_3334965_5	648757.Rvan_0455	7.253e-132	426.0	COG0623@1|root,COG0623@2|Bacteria,1MV05@1224|Proteobacteria,2TSU4@28211|Alphaproteobacteria,3N65Z@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	I	Enoyl- acyl-carrier-protein reductase NADH	-	-	1.3.1.10,1.3.1.9	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	M00083,M00572	R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671	RC00052,RC00076,RC00120	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_3334965_7	349163.Acry_1320	1.081e-125	408.0	COG0082@1|root,COG0082@2|Bacteria,1MU98@1224|Proteobacteria,2TQY2@28211|Alphaproteobacteria,2JQEB@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system	aroC	-	4.2.3.5	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R01714	RC00586	ko00000,ko00001,ko00002,ko01000	-	-	-	Chorismate_synt
DYD3_k127_3334965_27	639283.Snov_4448	1.484e-40	155.0	COG0082@1|root,COG0082@2|Bacteria,1MU98@1224|Proteobacteria,2TQY2@28211|Alphaproteobacteria,3EYSD@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system	aroC	GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	4.2.3.5	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R01714	RC00586	ko00000,ko00001,ko00002,ko01000	-	-	-	Chorismate_synt
DYD3_k127_3334965_33	1163617.SCD_n00954	0.000747	50.0	COG4096@1|root,COG4096@2|Bacteria,1QTS7@1224|Proteobacteria,2VJSS@28216|Betaproteobacteria	28216|Betaproteobacteria	L	type III restriction protein res subunit	-	-	3.1.21.3	ko:K01153	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	DUF4145,EcoEI_R_C,HSDR_N,HSDR_N_2,Helicase_C,ResIII
DYD3_k127_3334965_29	1245469.S58_42030	3.256e-34	143.0	COG1146@1|root,COG1146@2|Bacteria,1NCXI@1224|Proteobacteria,2UBEP@28211|Alphaproteobacteria,3K44J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	4Fe-4S binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer4,Fer4_6,Fer4_7
DYD3_k127_3334965_3	1211115.ALIQ01000029_gene756	3.812e-208	654.0	COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,1MU8P@1224|Proteobacteria,2TSMA@28211|Alphaproteobacteria,3N9XX@45404|Beijerinckiaceae	28211|Alphaproteobacteria	H	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate	ribB	-	3.5.4.25,4.1.99.12	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	M00125,M00840	R00425,R07281	RC00293,RC01792,RC01815,RC02504	ko00000,ko00001,ko00002,ko01000	-	-	-	DHBP_synthase,GTP_cyclohydro2
DYD3_k127_3334965_23	402881.Plav_1885	5.315e-52	194.0	COG0705@1|root,COG0705@2|Bacteria,1MYFP@1224|Proteobacteria,2TSJG@28211|Alphaproteobacteria,1JP67@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Rhomboid family	-	-	-	-	-	-	-	-	-	-	-	-	Rhomboid
DYD3_k127_3334965_16	414684.RC1_2416	1.189e-91	313.0	COG0500@1|root,COG2226@2|Bacteria,1NDFZ@1224|Proteobacteria,2TVI5@28211|Alphaproteobacteria,2JRD6@204441|Rhodospirillales	204441|Rhodospirillales	Q	ubiE/COQ5 methyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_3334965_15	1121028.ARQE01000006_gene4323	8.447e-100	339.0	COG2265@1|root,COG2265@2|Bacteria,1MV3A@1224|Proteobacteria,2TR40@28211|Alphaproteobacteria,2PJF3@255475|Aurantimonadaceae	28211|Alphaproteobacteria	J	tRNA (Uracil-5-)-methyltransferase	rumA	-	2.1.1.190,2.1.1.35	ko:K00557,ko:K03215	-	-	-	-	ko00000,ko01000,ko03009,ko03016	-	-	-	tRNA_U5-meth_tr
DYD3_k127_3334965_9	1121033.AUCF01000004_gene4978	1.388e-121	394.0	COG1189@1|root,COG1189@2|Bacteria,1MWP5@1224|Proteobacteria,2TRW9@28211|Alphaproteobacteria,2JP9D@204441|Rhodospirillales	204441|Rhodospirillales	J	rRNA methylase	tlyA	-	2.1.1.226,2.1.1.227	ko:K06442	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	FtsJ,S4
DYD3_k127_3334965_10	1205680.CAKO01000042_gene5452	9.736e-114	389.0	COG0534@1|root,COG0534@2|Bacteria,1MUAM@1224|Proteobacteria,2TSDU@28211|Alphaproteobacteria,2JPD5@204441|Rhodospirillales	204441|Rhodospirillales	V	MatE	norM	-	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
DYD3_k127_3334965_30	1122132.AQYH01000006_gene3663	2.585e-31	126.0	COG0174@1|root,COG0174@2|Bacteria,1MXPK@1224|Proteobacteria,2TUHR@28211|Alphaproteobacteria,4BII2@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Glutamine synthetase N-terminal domain	-	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C,Gln-synt_N_2
DYD3_k127_3335967_10	1090320.KB900605_gene2977	4.937e-23	101.0	COG4453@1|root,COG4453@2|Bacteria,1PZG3@1224|Proteobacteria,2UIFI@28211|Alphaproteobacteria,2K68X@204457|Sphingomonadales	204457|Sphingomonadales	S	Protein of unknown function (DUF1778)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1778
DYD3_k127_3335967_9	1150626.PHAMO_470024	2.09e-60	213.0	COG0454@1|root,COG0454@2|Bacteria,1RHV9@1224|Proteobacteria,2U84K@28211|Alphaproteobacteria,2JZ7Z@204441|Rhodospirillales	204441|Rhodospirillales	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_3335967_8	269796.Rru_A1746	9.785e-62	228.0	COG0683@1|root,COG0683@2|Bacteria,1MWJ1@1224|Proteobacteria,2TT0T@28211|Alphaproteobacteria,2JQNJ@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
DYD3_k127_3335967_4	1238182.C882_2394	2.574e-113	376.0	COG0167@1|root,COG0167@2|Bacteria,1MU7C@1224|Proteobacteria,2TRF8@28211|Alphaproteobacteria,2JPD2@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor	pyrD	-	1.3.5.2	ko:K00254	ko00240,ko01100,map00240,map01100	M00051	R01868	RC00051	ko00000,ko00001,ko00002,ko01000	-	-	-	DHO_dh
DYD3_k127_3335967_1	1380394.JADL01000011_gene3991	1.159e-125	423.0	COG0729@1|root,COG0729@2|Bacteria,1MUKM@1224|Proteobacteria,2TRWD@28211|Alphaproteobacteria,2JPPU@204441|Rhodospirillales	204441|Rhodospirillales	M	Surface antigen	-	-	-	ko:K07278	-	-	-	-	ko00000,ko02000	1.B.33.2.4	-	-	Bac_surface_Ag,POTRA
DYD3_k127_3335967_2	1380394.JADL01000011_gene3992	1.716e-123	443.0	COG2911@1|root,COG2911@2|Bacteria,1MUVD@1224|Proteobacteria,2TR45@28211|Alphaproteobacteria,2JQWJ@204441|Rhodospirillales	204441|Rhodospirillales	S	TamB, inner membrane protein subunit of TAM complex	-	-	-	ko:K09800	-	-	-	-	ko00000,ko02000	-	-	-	TamB
DYD3_k127_3335967_11	1122614.JHZF01000011_gene2280	1.415e-22	106.0	2E3CR@1|root,32YC0@2|Bacteria,1N9Q9@1224|Proteobacteria,2UF5B@28211|Alphaproteobacteria,2PETW@252301|Oceanicola	28211|Alphaproteobacteria	S	Nitrile hydratase beta subunit	MA20_29595	-	-	-	-	-	-	-	-	-	-	-	NHase_beta
DYD3_k127_3335967_6	1461694.ATO9_06250	2.667e-78	273.0	28I45@1|root,2Z87Q@2|Bacteria,1R432@1224|Proteobacteria,2U3PK@28211|Alphaproteobacteria,2PE2G@252301|Oceanicola	28211|Alphaproteobacteria	E	NHase catalyzes the hydration of various nitrile compounds to the corresponding amides	nthB	-	4.2.1.84	ko:K20807	ko00364,ko00380,ko00627,ko00643,ko01120,map00364,map00380,map00627,map00643,map01120	-	R04020,R05379,R05596,R07780,R07854	RC00483,RC01345,RC01432	ko00000,ko00001,ko01000	-	-	-	NHase_beta
DYD3_k127_3335967_5	1287276.X752_28440	5.476e-100	331.0	2BZ0R@1|root,2Z7U0@2|Bacteria,1MX37@1224|Proteobacteria,2TSBD@28211|Alphaproteobacteria,43H4H@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Nitrile hydratase	nthA	-	4.2.1.84	ko:K01721	ko00364,ko00380,ko00627,ko00643,ko01120,map00364,map00380,map00627,map00643,map01120	-	R02828,R04020,R05379,R05596,R07780,R07854	RC00483,RC00792,RC01345,RC01432	ko00000,ko00001,ko01000	-	-	-	NHase_alpha
DYD3_k127_3335967_12	1298867.AUES01000038_gene819	1.035e-05	55.0	COG0265@1|root,COG0265@2|Bacteria,1MV63@1224|Proteobacteria,2TS54@28211|Alphaproteobacteria,3JSEX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Trypsin	-	-	-	-	-	-	-	-	-	-	-	-	PG_binding_1,Trypsin_2
DYD3_k127_3335967_3	1121033.AUCF01000001_gene1930	9.235e-121	402.0	COG2307@1|root,COG2307@2|Bacteria,1MVZK@1224|Proteobacteria,2TQUM@28211|Alphaproteobacteria,2JQN9@204441|Rhodospirillales	204441|Rhodospirillales	S	A predicted alpha-helical domain with a conserved ER motif.	-	-	-	-	-	-	-	-	-	-	-	-	Alpha-E
DYD3_k127_3335967_0	414684.RC1_1362	8.643e-229	716.0	COG2308@1|root,COG2308@2|Bacteria,1MUAD@1224|Proteobacteria,2TRI7@28211|Alphaproteobacteria,2JPWT@204441|Rhodospirillales	204441|Rhodospirillales	S	A circularly permuted ATPgrasp	-	-	-	-	-	-	-	-	-	-	-	-	CP_ATPgrasp_2
DYD3_k127_3335967_7	640081.Dsui_3229	1.524e-67	233.0	COG1305@1|root,COG1305@2|Bacteria,1MVMI@1224|Proteobacteria,2VH3S@28216|Betaproteobacteria,2KUAT@206389|Rhodocyclales	206389|Rhodocyclales	E	Bacterial transglutaminase-like N-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_3338205_0	519989.ECTPHS_06792	8.418e-202	643.0	COG1178@1|root,COG1178@2|Bacteria,1MWEV@1224|Proteobacteria,1RP55@1236|Gammaproteobacteria,1WWS0@135613|Chromatiales	135613|Chromatiales	P	inner membrane component	-	-	-	ko:K02011	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.10	-	-	BPD_transp_1
DYD3_k127_3338205_1	331869.BAL199_25114	2.958e-30	122.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,4BQ2S@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	fbpC	-	3.6.3.30	ko:K02010	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.10	-	-	ABC_tran,TOBE_2
DYD3_k127_3344343_3	1333998.M2A_2851	1.094e-134	443.0	COG0745@1|root,COG2199@1|root,COG0745@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2TQQM@28211|Alphaproteobacteria,4BRP5@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	T	diguanylate cyclase	pleD	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464	2.7.7.65	ko:K02488	ko02020,ko04112,map02020,map04112	M00511	R08057	-	ko00000,ko00001,ko00002,ko01000,ko02022	-	-	-	GGDEF,Response_reg
DYD3_k127_3344343_1	1123020.AUIE01000008_gene3560	8.206e-223	708.0	COG2015@1|root,COG2015@2|Bacteria,1MU82@1224|Proteobacteria,1RMHR@1236|Gammaproteobacteria,1YCRW@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	Q	Alkyl sulfatase dimerisation	-	-	-	-	-	-	-	-	-	-	-	-	Alkyl_sulf_C,Alkyl_sulf_dimr,Lactamase_B
DYD3_k127_3344343_0	1500301.JQMF01000027_gene2913	3.548e-227	713.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,4B7AV@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	belongs to the aldehyde dehydrogenase family	-	-	1.2.1.54,1.2.1.99	ko:K09472,ko:K12254	ko00330,ko01100,map00330,map01100	M00136	R02549,R03177,R07417,R07418	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_3344343_6	1470591.BW41_02626	2.101e-24	104.0	COG0267@1|root,COG0267@2|Bacteria,1N6QV@1224|Proteobacteria,2UF4D@28211|Alphaproteobacteria,2K6VC@204457|Sphingomonadales	204457|Sphingomonadales	J	Belongs to the bacterial ribosomal protein bL33 family	rpmG	-	-	ko:K02913	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L33
DYD3_k127_3344343_2	84531.JMTZ01000067_gene1709	5.539e-219	700.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,1RNBT@1236|Gammaproteobacteria,1X40Z@135614|Xanthomonadales	135614|Xanthomonadales	P	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
DYD3_k127_3344343_4	1131814.JAFO01000001_gene2244	4.179e-85	298.0	COG0477@1|root,COG2814@2|Bacteria,1MVUF@1224|Proteobacteria,2TU4M@28211|Alphaproteobacteria,3F2DE@335928|Xanthobacteraceae	28211|Alphaproteobacteria	EGP	MFS_1 like family	yfkF	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_1_like,Sugar_tr
DYD3_k127_3344343_5	1333998.M2A_3303	7.891e-25	109.0	COG1051@1|root,COG1051@2|Bacteria,1QU5T@1224|Proteobacteria,2TW0R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	Nudix hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_335002_0	190650.CC_1355	4.397e-176	561.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TQXI@28211|Alphaproteobacteria,2KF5B@204458|Caulobacterales	204458|Caulobacterales	H	5-aminolevulinic acid synthase	-	-	2.3.1.37	ko:K00643	ko00260,ko00860,ko01100,ko01110,map00260,map00860,map01100,map01110	-	R00830	RC00004,RC02815	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_335002_1	69395.JQLZ01000007_gene1588	5.609e-47	171.0	COG3268@1|root,COG3268@2|Bacteria,1MVI3@1224|Proteobacteria,2TV1G@28211|Alphaproteobacteria,2KHUE@204458|Caulobacterales	204458|Caulobacterales	S	Saccharopine dehydrogenase NADP binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Sacchrp_dh_NADP
DYD3_k127_3358454_2	402881.Plav_2053	2.545e-143	464.0	COG0661@1|root,COG0661@2|Bacteria,1MW1J@1224|Proteobacteria,2TSHG@28211|Alphaproteobacteria,1JN13@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	ABC1 family	-	-	-	-	-	-	-	-	-	-	-	-	ABC1
DYD3_k127_3358454_0	1121033.AUCF01000010_gene4418	1.024e-264	829.0	COG1164@1|root,COG1164@2|Bacteria,1MXAC@1224|Proteobacteria,2TRPY@28211|Alphaproteobacteria,2JQ91@204441|Rhodospirillales	204441|Rhodospirillales	E	oligoendopeptidase F	-	-	-	ko:K08602	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M3,Peptidase_M3_N
DYD3_k127_3358454_1	1469613.JT55_13645	1.543e-157	503.0	COG0701@1|root,COG0701@2|Bacteria,1MUN8@1224|Proteobacteria,2TRU3@28211|Alphaproteobacteria,3FDK7@34008|Rhodovulum	28211|Alphaproteobacteria	S	Predicted permease	-	-	-	ko:K07089	-	-	-	-	ko00000	-	-	-	ArsP_1
DYD3_k127_3358454_11	195105.CN97_04070	2.315e-24	117.0	COG0526@1|root,COG0526@2|Bacteria,1N728@1224|Proteobacteria,2UFJA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	CO	Thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_3
DYD3_k127_3358454_9	1207063.P24_09686	9.062e-30	120.0	COG3750@1|root,COG3750@2|Bacteria,1N77J@1224|Proteobacteria,2UFX6@28211|Alphaproteobacteria,2JTEE@204441|Rhodospirillales	204441|Rhodospirillales	S	Uncharacterized protein conserved in bacteria (DUF2312)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2312
DYD3_k127_3358454_8	1429916.X566_13740	1.345e-43	160.0	COG3492@1|root,COG3492@2|Bacteria,1MZ3I@1224|Proteobacteria,2UC11@28211|Alphaproteobacteria,3JZFI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1244)	MA20_03865	-	-	ko:K09948	-	-	-	-	ko00000	-	-	-	DUF1244
DYD3_k127_3358454_4	1238182.C882_0237	3.522e-110	379.0	COG0642@1|root,COG0642@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TRHH@28211|Alphaproteobacteria,2JPVE@204441|Rhodospirillales	204441|Rhodospirillales	T	signal transduction histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,Hpt,PAS_3,PAS_7,PAS_9,Response_reg
DYD3_k127_3358454_5	713586.KB900536_gene1645	2.637e-98	332.0	COG3660@1|root,COG3660@2|Bacteria,1R70U@1224|Proteobacteria,1SZXS@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	nucleoside-diphosphate sugar epimerase	-	-	-	ko:K07276	-	-	-	-	ko00000	-	-	-	Mito_fiss_Elm1
DYD3_k127_3358454_6	1121033.AUCF01000001_gene2030	6.464e-76	268.0	COG0697@1|root,COG0697@2|Bacteria,1RCED@1224|Proteobacteria,2U66Q@28211|Alphaproteobacteria,2JRZ1@204441|Rhodospirillales	204441|Rhodospirillales	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_3358454_12	272630.MexAM1_META1p3064	2.366e-22	102.0	COG3609@1|root,COG3609@2|Bacteria,1PPWN@1224|Proteobacteria,2V2BE@28211|Alphaproteobacteria,1JYBE@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	addiction module antidote protein, CC2985 family	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	-
DYD3_k127_3358454_10	991905.SL003B_0874	5.608e-26	110.0	COG3668@1|root,COG3668@2|Bacteria,1N016@1224|Proteobacteria,2UEJX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_3358454_3	1168059.KB899087_gene3426	1.275e-140	466.0	COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2TR9H@28211|Alphaproteobacteria,3EYUC@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	4Fe-4S dicluster domain	glcF	-	-	ko:K11473	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001	-	-	-	CCG,Fer4_7
DYD3_k127_3358454_7	1380394.JADL01000001_gene3054	9.029e-49	183.0	COG0277@1|root,COG0277@2|Bacteria,1MVYV@1224|Proteobacteria,2TRA7@28211|Alphaproteobacteria,2JPFB@204441|Rhodospirillales	204441|Rhodospirillales	C	FAD binding domain	glcE	-	-	ko:K11472	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_3371021_6	472175.EL18_00115	2.965e-28	116.0	COG0828@1|root,COG0828@2|Bacteria,1MZA1@1224|Proteobacteria,2UC58@28211|Alphaproteobacteria,43KQP@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bS21 family	rpsU	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904	-	ko:K02970	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S21
DYD3_k127_3371021_4	1245471.PCA10_00300	1.275e-58	214.0	COG0583@1|root,COG0583@2|Bacteria,1R43D@1224|Proteobacteria,1S33J@1236|Gammaproteobacteria,1YDVV@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_3371021_1	1380394.JADL01000004_gene6005	1.11e-220	694.0	COG3119@1|root,COG3119@2|Bacteria,1MV0B@1224|Proteobacteria,2TRI6@28211|Alphaproteobacteria,2JRHZ@204441|Rhodospirillales	204441|Rhodospirillales	P	Sulfatase	-	-	3.1.6.6	ko:K01133	-	-	-	-	ko00000,ko01000	-	-	-	Choline_sulf_C,Sulfatase
DYD3_k127_3371021_2	1458357.BG58_41245	2.832e-111	373.0	COG2113@1|root,COG2113@2|Bacteria,1MVIG@1224|Proteobacteria,2VPFI@28216|Betaproteobacteria,1K2TX@119060|Burkholderiaceae	28216|Betaproteobacteria	E	PFAM Substrate-binding region of ABC-type glycine betaine transport system	-	-	-	ko:K02002	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	OpuAC
DYD3_k127_3371021_5	1380394.JADL01000002_gene1246	6.57e-42	164.0	COG3963@1|root,COG3963@2|Bacteria,1N1KB@1224|Proteobacteria,2TVD9@28211|Alphaproteobacteria,2JTJ9@204441|Rhodospirillales	204441|Rhodospirillales	I	Phospholipid N-methyltransferase	-	-	2.1.1.17,2.1.1.71	ko:K00570	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00091	R01320,R02056,R03424	RC00003,RC00060,RC00181,RC00496	ko00000,ko00001,ko00002,ko01000	-	-	-	-
DYD3_k127_3371021_7	1089551.KE386572_gene3474	8.476e-18	91.0	COG2825@1|root,COG2825@2|Bacteria,1NAN5@1224|Proteobacteria,2UGJF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	COG2825 Outer membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	OmpH
DYD3_k127_3371021_3	1121861.KB899922_gene3112	1.955e-88	305.0	COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,2U2CU@28211|Alphaproteobacteria,2JQW0@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	HlyD_D23
DYD3_k127_3371021_0	1121033.AUCF01000004_gene4854	0.0	1041.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,2JPRP@204441|Rhodospirillales	204441|Rhodospirillales	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_3384432_6	1207063.P24_12307	4.483e-65	235.0	COG0829@1|root,COG0829@2|Bacteria,1RABD@1224|Proteobacteria,2U57R@28211|Alphaproteobacteria,2JRYZ@204441|Rhodospirillales	204441|Rhodospirillales	O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter	ureD	-	-	ko:K03190	-	-	-	-	ko00000	-	-	-	UreD
DYD3_k127_3384432_5	1336208.JADY01000004_gene3613	1.499e-108	355.0	COG0410@1|root,COG0410@2|Bacteria,1MU4Z@1224|Proteobacteria,2TS23@28211|Alphaproteobacteria,2JQSY@204441|Rhodospirillales	204441|Rhodospirillales	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K11963	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran
DYD3_k127_3384432_4	1502851.FG93_01218	1.79e-113	370.0	COG4674@1|root,COG4674@2|Bacteria,1MUBR@1224|Proteobacteria,2TQVJ@28211|Alphaproteobacteria,3JVGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid ATP-binding cassette transporter	urtD	-	-	ko:K11962	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran,BCA_ABC_TP_C
DYD3_k127_3384432_3	991905.SL003B_0415	1.686e-163	525.0	COG4177@1|root,COG4177@2|Bacteria,1MUPI@1224|Proteobacteria,2TTN2@28211|Alphaproteobacteria,4BPDY@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	urtC	-	-	ko:K11961	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
DYD3_k127_3384432_2	709797.CSIRO_1480	1.169e-190	610.0	COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2TRMA@28211|Alphaproteobacteria,3JV23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	urtB	-	-	ko:K11960	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
DYD3_k127_3384432_1	1125973.JNLC01000016_gene2860	2.978e-239	745.0	COG0683@1|root,COG0683@2|Bacteria,1MU8V@1224|Proteobacteria,2TS3I@28211|Alphaproteobacteria,3JR4H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	urtA	-	-	ko:K11959	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	Peripla_BP_5
DYD3_k127_3384432_7	1122603.ATVI01000006_gene575	1.037e-50	185.0	COG1764@1|root,COG1764@2|Bacteria,1RD1A@1224|Proteobacteria,1S3UA@1236|Gammaproteobacteria,1X6IA@135614|Xanthomonadales	135614|Xanthomonadales	O	organic hydroperoxide resistance protein	ohr	-	-	-	-	-	-	-	-	-	-	-	OsmC
DYD3_k127_3384432_8	1110502.TMO_1568	5.483e-50	181.0	COG1846@1|root,COG1846@2|Bacteria,1RH1F@1224|Proteobacteria,2U9GN@28211|Alphaproteobacteria,2JSY6@204441|Rhodospirillales	204441|Rhodospirillales	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR
DYD3_k127_3384432_0	349521.HCH_04995	8.665e-271	848.0	COG3320@1|root,COG4221@1|root,COG3320@2|Bacteria,COG4221@2|Bacteria,1QSHC@1224|Proteobacteria,1RQP8@1236|Gammaproteobacteria,1XMDW@135619|Oceanospirillales	135619|Oceanospirillales	M	dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_4,adh_short
DYD3_k127_3385383_6	196490.AUEZ01000115_gene1206	6.23e-07	55.0	COG2010@1|root,COG2010@2|Bacteria,1N8E4@1224|Proteobacteria,2UA9J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3385383_4	1121033.AUCF01000020_gene676	5.046e-18	91.0	COG2010@1|root,COG2010@2|Bacteria,1NF9H@1224|Proteobacteria,2UH73@28211|Alphaproteobacteria,2JXVJ@204441|Rhodospirillales	204441|Rhodospirillales	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C,Cytochrome_CBB3
DYD3_k127_3385383_1	196490.AUEZ01000115_gene1204	2.314e-78	265.0	28V8Y@1|root,2ZHBX@2|Bacteria,1RD5G@1224|Proteobacteria,2U0PF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	dehydrogenase light chain	mauA	GO:0005575,GO:0005623,GO:0042597,GO:0044464	1.4.9.1	ko:K15228	ko00680,ko01120,map00680,map01120	-	R00606	RC00189	ko00000,ko00001,ko01000	-	-	-	Me-amine-dh_L
DYD3_k127_3385383_2	1121033.AUCF01000020_gene674	3.735e-76	263.0	COG0526@1|root,COG0526@2|Bacteria,1R3WA@1224|Proteobacteria,2U3RM@28211|Alphaproteobacteria,2JXTY@204441|Rhodospirillales	204441|Rhodospirillales	CO	methylamine dehydrogenase accessory protein MauD	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3385383_3	1208323.B30_01710	7.784e-23	104.0	2AFHJ@1|root,315I4@2|Bacteria,1QWX6@1224|Proteobacteria,2TX7E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Methylamine utilisation protein MauE	-	-	-	-	-	-	-	-	-	-	-	-	MauE
DYD3_k127_3385383_0	196490.AUEZ01000115_gene1201	1.029e-94	323.0	COG3391@1|root,COG3391@2|Bacteria,1R8X0@1224|Proteobacteria,2U2K2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	methylamine dehydrogenase heavy	-	-	1.4.9.1	ko:K15229	ko00680,ko01120,map00680,map01120	-	R00606	RC00189	ko00000,ko00001,ko01000	-	-	-	Me-amine-dh_H
DYD3_k127_3385383_5	1301098.PKB_2675	1.451e-08	63.0	COG2207@1|root,COG2207@2|Bacteria,1Q3UX@1224|Proteobacteria,1RS88@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional regulator	eutR	GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006089,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009438,GO:0009987,GO:0010467,GO:0016053,GO:0016070,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019172,GO:0019243,GO:0019249,GO:0019438,GO:0019752,GO:0032774,GO:0032787,GO:0034641,GO:0034645,GO:0034654,GO:0042180,GO:0042182,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046185,GO:0046394,GO:0046483,GO:0051596,GO:0061727,GO:0071704,GO:0072330,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901575,GO:1901576,GO:1901615,GO:1901617	-	ko:K04033	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
DYD3_k127_339745_4	316055.RPE_1820	2.105e-14	75.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JSZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	MA20_15975	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_339745_1	1218084.BBJK01000124_gene7016	1.536e-67	243.0	COG1309@1|root,COG1309@2|Bacteria,1RAHE@1224|Proteobacteria,2W325@28216|Betaproteobacteria,1K6BY@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_339745_2	450851.PHZ_c2266	2.152e-64	226.0	COG3631@1|root,COG3631@2|Bacteria,1RFJW@1224|Proteobacteria,2U8J7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL
DYD3_k127_339745_3	402881.Plav_0139	7.156e-50	180.0	COG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,2UCCR@28211|Alphaproteobacteria,1JP8P@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	Thioredoxin	trxA	-	-	ko:K03671	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	Thioredoxin
DYD3_k127_339745_0	1238182.C882_4385	9.076e-138	456.0	COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2TQJZ@28211|Alphaproteobacteria,2JPMW@204441|Rhodospirillales	204441|Rhodospirillales	L	Belongs to the helicase family. UvrD subfamily	addA	-	3.6.4.12	ko:K16898	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
DYD3_k127_3400757_3	1110502.TMO_0396	3.597e-48	184.0	COG0697@1|root,COG0697@2|Bacteria,1R81I@1224|Proteobacteria,2VFWV@28211|Alphaproteobacteria,2JTMS@204441|Rhodospirillales	204441|Rhodospirillales	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_3400757_7	1158345.JNLL01000001_gene1027	0.0006047	52.0	2EH3D@1|root,33AVD@2|Bacteria	2|Bacteria	S	Protein of unknown function (DUF3592)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3592
DYD3_k127_3400757_1	1144275.COCOR_06430	1.43e-88	306.0	COG0477@1|root,COG2814@2|Bacteria,1PATR@1224|Proteobacteria,437WJ@68525|delta/epsilon subdivisions,2WYPZ@28221|Deltaproteobacteria,2YUGK@29|Myxococcales	28221|Deltaproteobacteria	EGP	Sugar (and other) transporter	mmrA	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
DYD3_k127_3400757_4	1207063.P24_11817	9.048e-48	193.0	COG0122@1|root,COG0122@2|Bacteria,1MX9C@1224|Proteobacteria,2TVJ7@28211|Alphaproteobacteria,2JT0A@204441|Rhodospirillales	204441|Rhodospirillales	L	endonuclease III	-	-	3.2.2.21	ko:K01247	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HhH-GPD
DYD3_k127_3400757_2	1121106.JQKB01000011_gene404	2.032e-72	256.0	COG1560@1|root,COG1560@2|Bacteria,1MVNI@1224|Proteobacteria,2TS2H@28211|Alphaproteobacteria,2JQV6@204441|Rhodospirillales	204441|Rhodospirillales	M	COG1560 Lauroyl myristoyl acyltransferase	-	-	2.3.1.241	ko:K02517	ko00540,ko01100,map00540,map01100	M00060	R05146	RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Lip_A_acyltrans
DYD3_k127_3400757_6	1177928.TH2_05298	1.319e-21	98.0	COG3668@1|root,COG3668@2|Bacteria,1PZJX@1224|Proteobacteria,2V0NI@28211|Alphaproteobacteria,2JUJ6@204441|Rhodospirillales	204441|Rhodospirillales	S	COG3668 Plasmid stabilization system protein	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_3400757_5	472759.Nhal_3642	1.319e-22	110.0	COG3609@1|root,COG3609@2|Bacteria,1N86J@1224|Proteobacteria	1224|Proteobacteria	K	Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin,RHH_1
DYD3_k127_3400757_0	1333998.M2A_2048	4.929e-135	440.0	COG0624@1|root,COG0624@2|Bacteria,1MVBR@1224|Proteobacteria,2TRUK@28211|Alphaproteobacteria,4BPSJ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the peptidase M20A family. ArgE subfamily	argE	-	3.5.1.16	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R00669,R09107	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_3459211_4	1173027.Mic7113_2972	4.644e-88	298.0	COG2008@1|root,COG2008@2|Bacteria,1G1VY@1117|Cyanobacteria,1H7SC@1150|Oscillatoriales	1117|Cyanobacteria	E	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde	-	-	4.1.2.48	ko:K01620	ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230	-	R00751,R06171	RC00312,RC00372	ko00000,ko00001,ko01000	-	-	-	Beta_elim_lyase
DYD3_k127_3459211_15	87626.PTD2_04958	4.935e-09	59.0	2DTNT@1|root,33M3P@2|Bacteria,1NH3S@1224|Proteobacteria,1SGZB@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3459211_3	296591.Bpro_2513	3.774e-93	311.0	COG4185@1|root,COG4185@2|Bacteria,1RBEQ@1224|Proteobacteria,2WFYU@28216|Betaproteobacteria,4ADNU@80864|Comamonadaceae	28216|Betaproteobacteria	S	zeta toxin	-	-	-	-	-	-	-	-	-	-	-	-	AAA_33
DYD3_k127_3459211_8	296591.Bpro_2514	2.578e-45	166.0	2E8UU@1|root,33358@2|Bacteria,1NCC4@1224|Proteobacteria,2VW9B@28216|Betaproteobacteria,4AFCX@80864|Comamonadaceae	28216|Betaproteobacteria	S	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_3459211_1	604331.AUHY01000003_gene1085	1.621e-151	503.0	COG3211@1|root,COG3211@2|Bacteria,1WKXC@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	S	Bacterial protein of unknown function (DUF839)	-	-	-	ko:K07093	-	-	-	-	ko00000	-	-	-	DUF839
DYD3_k127_3459211_11	1411123.JQNH01000001_gene3834	1.229e-12	79.0	COG3637@1|root,COG3637@2|Bacteria,1MVJR@1224|Proteobacteria,2U7C3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Outer membrane protein beta-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl
DYD3_k127_3459211_6	272568.GDI0480	1.502e-58	216.0	COG1989@1|root,COG1989@2|Bacteria,1MUZF@1224|Proteobacteria,2UAW0@28211|Alphaproteobacteria,2JUIM@204441|Rhodospirillales	204441|Rhodospirillales	NOU	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	-	-	3.4.23.43	ko:K02654	-	M00331	-	-	ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2	-	-	DiS_P_DiS,Peptidase_A24
DYD3_k127_3459211_2	1089551.KE386572_gene2125	3.216e-132	448.0	COG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,2TT8A@28211|Alphaproteobacteria,4BTGA@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	NU	Bacterial type II/III secretion system short domain	gspD	-	-	ko:K02453	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	Secretin,Secretin_N
DYD3_k127_3459211_0	1089551.KE386572_gene2124	1.368e-163	533.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2TRMU@28211|Alphaproteobacteria,4BPNB@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	NU	Type II/IV secretion system protein	gspE	-	-	ko:K02454,ko:K02652	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	T2SSE,T2SSE_N
DYD3_k127_3459211_5	765914.ThisiDRAFT_1748	5.219e-81	299.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,1RQ86@1236|Gammaproteobacteria,1WWYV@135613|Chromatiales	135613|Chromatiales	NU	Type II secretion system	-	-	-	ko:K02455	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSF
DYD3_k127_3459211_7	78245.Xaut_2109	9.246e-51	185.0	COG2165@1|root,COG2165@2|Bacteria,1RDX2@1224|Proteobacteria,2U7GY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NU	general secretion pathway protein G	gspG	-	-	ko:K02456	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl,T2SSG
DYD3_k127_3459211_12	765914.ThisiDRAFT_0680	1.826e-11	73.0	COG4970@1|root,COG4970@2|Bacteria,1NBWI@1224|Proteobacteria,1S5MN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	NU	general secretion pathway protein	xpsH	-	-	ko:K02457	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	GspH,N_methyl
DYD3_k127_3459211_16	1245469.S58_60030	2.282e-06	55.0	COG2165@1|root,COG2165@2|Bacteria,1R1HH@1224|Proteobacteria	1224|Proteobacteria	U	overlaps another CDS with the same product name	-	-	-	ko:K02458	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl
DYD3_k127_3459211_13	1245469.S58_60020	3.132e-11	74.0	COG4795@1|root,COG4795@2|Bacteria,1N8GS@1224|Proteobacteria	2|Bacteria	U	Pfam:N_methyl_2	xpsJ	-	-	ko:K02458,ko:K02459	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl
DYD3_k127_3459211_10	472759.Nhal_3652	5.302e-13	79.0	COG3156@1|root,COG3156@2|Bacteria,1RJRE@1224|Proteobacteria,1S6CB@1236|Gammaproteobacteria,1WW8Y@135613|Chromatiales	135613|Chromatiales	U	PFAM General secretion pathway protein K	-	-	-	ko:K02460	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSK
DYD3_k127_3459211_9	935863.AWZR01000009_gene68	3.226e-27	128.0	COG3166@1|root,COG3166@2|Bacteria,1RJTG@1224|Proteobacteria,1S6RT@1236|Gammaproteobacteria,1X4P5@135614|Xanthomonadales	135614|Xanthomonadales	NU	General secretion pathway protein	xpsL	-	-	ko:K02461	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	PilN,T2SSL
DYD3_k127_3461539_0	272568.GDI0439	1.666e-235	736.0	COG2710@1|root,COG2710@2|Bacteria,1MWAJ@1224|Proteobacteria,2TQUV@28211|Alphaproteobacteria,2JPI6@204441|Rhodospirillales	204441|Rhodospirillales	C	Belongs to the NifD NifK NifE NifN family	nifE	-	-	ko:K02587	-	-	-	-	ko00000	-	-	-	Oxidored_nitro
DYD3_k127_3461539_1	1120956.JHZK01000003_gene301	5.818e-176	586.0	COG2710@1|root,COG2710@2|Bacteria,1MWSX@1224|Proteobacteria,2TTNK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Belongs to the NifD NifK NifE NifN family	nifN	-	-	ko:K02592	-	-	-	-	ko00000	-	-	-	Oxidored_nitro
DYD3_k127_3461539_5	1336235.JAEG01000016_gene4373	9.452e-53	192.0	COG1433@1|root,COG1433@2|Bacteria,1RD9P@1224|Proteobacteria,2U9AX@28211|Alphaproteobacteria,4BEUP@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Dinitrogenase iron-molybdenum cofactor	nifX	-	-	ko:K02596	-	-	-	-	ko00000	-	-	-	Nitro_FeMo-Co
DYD3_k127_3461539_4	579138.Zymop_1305	4.742e-54	199.0	2DBX8@1|root,2ZBN7@2|Bacteria,1RABM@1224|Proteobacteria,2U5PN@28211|Alphaproteobacteria,2KAPU@204457|Sphingomonadales	204457|Sphingomonadales	S	TIGRFAM nitrogen fixation protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF269
DYD3_k127_3461539_8	272568.GDI0443	7.109e-18	91.0	COG5420@1|root,COG5420@2|Bacteria,1N74Y@1224|Proteobacteria,2UH4J@28211|Alphaproteobacteria,2JUFG@204441|Rhodospirillales	204441|Rhodospirillales	S	Rop-like	-	-	-	-	-	-	-	-	-	-	-	-	Rop-like
DYD3_k127_3461539_6	272568.GDI0444	3.122e-42	156.0	COG2768@1|root,COG2768@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Fer4
DYD3_k127_3461539_3	272568.GDI0445	1.231e-66	235.0	2BDS5@1|root,327FW@2|Bacteria,1N15E@1224|Proteobacteria,2TTQR@28211|Alphaproteobacteria,2JT1D@204441|Rhodospirillales	204441|Rhodospirillales	S	NifQ	nifQ	-	-	ko:K15790	-	-	-	-	ko00000	-	-	-	NifQ
DYD3_k127_3461539_7	717785.HYPMC_3671	4.216e-42	159.0	COG0316@1|root,COG0316@2|Bacteria,1MZTE@1224|Proteobacteria,2UC0W@28211|Alphaproteobacteria,3N8TP@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	S	Belongs to the HesB IscA family	iscA	-	-	ko:K13628	-	-	-	-	ko00000,ko03016	-	-	-	Fe-S_biosyn
DYD3_k127_3461539_2	272568.GDI0447	5.113e-133	439.0	COG0694@1|root,COG0822@1|root,COG2906@1|root,COG0694@2|Bacteria,COG0822@2|Bacteria,COG2906@2|Bacteria,1RD5K@1224|Proteobacteria,2TU34@28211|Alphaproteobacteria,2JSAG@204441|Rhodospirillales	204441|Rhodospirillales	C	A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters	nifU	-	-	ko:K04488,ko:K13819	-	-	-	-	ko00000	-	-	-	Fer2_BFD,NifU,NifU_N
DYD3_k127_3473590_0	670307.HYPDE_26258	3.87e-117	383.0	2DB8N@1|root,2Z7S9@2|Bacteria,1PZ8J@1224|Proteobacteria,2TRP7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3047)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3047
DYD3_k127_3473590_8	1208323.B30_17535	3.187e-21	104.0	COG0790@1|root,COG0790@2|Bacteria	2|Bacteria	S	beta-lactamase activity	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
DYD3_k127_3473590_6	935261.JAGL01000012_gene3526	2.391e-44	164.0	COG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,2UBRG@28211|Alphaproteobacteria,43RET@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_3473590_5	156889.Mmc1_0024	6.218e-52	197.0	28MQN@1|root,2ZAZG@2|Bacteria,1MVVQ@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3473590_4	1123059.KB823013_gene743	3.898e-55	212.0	COG0424@1|root,COG0424@2|Bacteria,1RDA9@1224|Proteobacteria,2U9H5@28211|Alphaproteobacteria,43XT7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	D	Maf-like protein	maf	-	-	ko:K06287	-	-	-	-	ko00000	-	-	-	Maf
DYD3_k127_3473590_1	1380394.JADL01000001_gene2090	4.032e-108	359.0	COG0169@1|root,COG0169@2|Bacteria,1MVH4@1224|Proteobacteria,2TS99@28211|Alphaproteobacteria,2JPBD@204441|Rhodospirillales	204441|Rhodospirillales	E	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	aroE	-	1.1.1.25	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413	RC00206	ko00000,ko00001,ko00002,ko01000	-	-	-	Shikimate_DH,Shikimate_dh_N
DYD3_k127_3473590_2	1333998.M2A_0211	4.374e-66	233.0	COG0237@1|root,COG0237@2|Bacteria,1RCXT@1224|Proteobacteria,2U765@28211|Alphaproteobacteria,4BQDG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A	coaE	GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.24	ko:K00859	ko00770,ko01100,map00770,map01100	M00120	R00130	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	CoaE
DYD3_k127_3473590_3	1333998.M2A_0212	3.639e-63	232.0	COG0847@1|root,COG0847@2|Bacteria,1MV8Z@1224|Proteobacteria,2TTFF@28211|Alphaproteobacteria,4BQ0C@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	dnaQ	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234	2.7.7.7	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	RNase_T
DYD3_k127_3491989_3	1054213.HMPREF9946_05196	3.371e-37	149.0	COG0155@1|root,COG0155@2|Bacteria,1N541@1224|Proteobacteria,2TQTT@28211|Alphaproteobacteria,2JWJZ@204441|Rhodospirillales	204441|Rhodospirillales	C	Nitrite/Sulfite reductase ferredoxin-like half domain	-	-	1.14.13.83	ko:K02229	ko00860,ko01100,map00860,map01100	-	R05217	RC01979	ko00000,ko00001,ko01000	-	-	-	NIR_SIR,NIR_SIR_ferr
DYD3_k127_3491989_2	1054213.HMPREF9946_05197	5.03e-89	299.0	COG2082@1|root,COG2082@2|Bacteria,1MX1E@1224|Proteobacteria,2TRRB@28211|Alphaproteobacteria,2JS1W@204441|Rhodospirillales	204441|Rhodospirillales	H	Precorrin-8X methylmutase	cobH	-	5.4.99.60,5.4.99.61	ko:K06042	ko00860,ko01100,map00860,map01100	-	R05177,R05814	RC01292,RC01980	ko00000,ko00001,ko01000	-	-	-	CbiC
DYD3_k127_3491989_1	1336208.JADY01000001_gene799	8.781e-101	335.0	COG2243@1|root,COG2243@2|Bacteria,1MV3G@1224|Proteobacteria,2TTJH@28211|Alphaproteobacteria,2JRXN@204441|Rhodospirillales	204441|Rhodospirillales	H	Precorrin-2	cobI	-	2.1.1.130,2.1.1.151	ko:K03394	ko00860,ko01100,map00860,map01100	-	R03948,R05808	RC00003,RC01035,RC01662	ko00000,ko00001,ko01000	-	-	-	TP_methylase
DYD3_k127_3491989_0	1054213.HMPREF9946_05199	8.365e-102	344.0	COG1010@1|root,COG1010@2|Bacteria,1MU79@1224|Proteobacteria,2TQJQ@28211|Alphaproteobacteria,2JQ9W@204441|Rhodospirillales	204441|Rhodospirillales	H	Precorrin-3B	cobJ	-	2.1.1.131,3.7.1.12	ko:K05934,ko:K13541	ko00860,ko01100,map00860,map01100	-	R05180,R05809,R07772	RC00003,RC01293,RC01545,RC02097,RC03471	ko00000,ko00001,ko01000	-	-	-	CbiG_C,CbiG_N,TP_methylase
DYD3_k127_3493613_0	1095749.HMPREF1052_1331	3.773e-61	221.0	COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,1RN2T@1236|Gammaproteobacteria,1Y833@135625|Pasteurellales	135625|Pasteurellales	GM	ABC-type polysaccharide polyol phosphate transport system, ATPase component	-	-	3.6.3.38	ko:K09689,ko:K09691	ko02010,map02010	M00249,M00250	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.101,3.A.1.103	-	-	ABC_tran
DYD3_k127_3493613_1	502025.Hoch_5955	2.125e-35	145.0	COG1682@1|root,COG1682@2|Bacteria,1N0X3@1224|Proteobacteria,42SZT@68525|delta/epsilon subdivisions,2WPTX@28221|Deltaproteobacteria,2YZ9V@29|Myxococcales	28221|Deltaproteobacteria	GM	ABC-2 type transporter	-	-	-	ko:K09688,ko:K09690	ko02010,map02010	M00249,M00250	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.101,3.A.1.103	-	-	ABC2_membrane
DYD3_k127_3493613_2	5970.XP_009159708.1	0.0003245	43.0	COG2057@1|root,KOG3822@2759|Eukaryota,38C4R@33154|Opisthokonta,3NXV8@4751|Fungi,3QKJE@4890|Ascomycota,20KMG@147545|Eurotiomycetes,3MVXP@451870|Chaetothyriomycetidae	4751|Fungi	H	Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate	-	-	2.8.3.5	ko:K01027	ko00072,ko00280,ko00650,map00072,map00280,map00650	-	R00410	RC00014	ko00000,ko00001,ko01000	-	-	-	CoA_trans
DYD3_k127_3495017_7	1120792.JAFV01000001_gene3198	1.984e-15	76.0	COG0230@1|root,COG0230@2|Bacteria,1NGGS@1224|Proteobacteria,2UJCE@28211|Alphaproteobacteria,36Z1K@31993|Methylocystaceae	28211|Alphaproteobacteria	J	Ribosomal protein L34	rpmH	-	-	ko:K02914	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L34
DYD3_k127_3495017_5	1207063.P24_02081	4.886e-28	120.0	COG0594@1|root,COG0594@2|Bacteria,1N6QY@1224|Proteobacteria,2UFAB@28211|Alphaproteobacteria,2JU1B@204441|Rhodospirillales	204441|Rhodospirillales	J	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	rnpA	-	3.1.26.5	ko:K03536	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Ribonuclease_P
DYD3_k127_3495017_6	742726.HMPREF9448_02601	4.21e-23	107.0	COG0084@1|root,COG0759@1|root,COG0084@2|Bacteria,COG0759@2|Bacteria,4NSGW@976|Bacteroidetes,2FQ90@200643|Bacteroidia,22Y9I@171551|Porphyromonadaceae	976|Bacteroidetes	L	hydrolase, TatD family	-	-	-	ko:K03424	-	-	-	-	ko00000,ko01000	-	-	-	TatD_DNase
DYD3_k127_3495017_0	1380394.JADL01000001_gene2182	4.083e-201	644.0	COG0706@1|root,COG0706@2|Bacteria,1MV5M@1224|Proteobacteria,2TSTJ@28211|Alphaproteobacteria,2JPX0@204441|Rhodospirillales	204441|Rhodospirillales	U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins	yidC	-	-	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9	-	-	60KD_IMP,YidC_periplas
DYD3_k127_3495017_3	414684.RC1_2284	1.179e-74	264.0	COG0218@1|root,COG0218@2|Bacteria,1MY3Z@1224|Proteobacteria,2U5E5@28211|Alphaproteobacteria,2JRTK@204441|Rhodospirillales	204441|Rhodospirillales	D	Necessary for normal cell division and for the maintenance of normal septation	engB	-	-	ko:K03978	-	-	-	-	ko00000,ko03036	-	-	-	MMR_HSR1
DYD3_k127_3495017_1	1380394.JADL01000001_gene2184	2.342e-137	445.0	COG0548@1|root,COG0548@2|Bacteria,1MU17@1224|Proteobacteria,2TQQS@28211|Alphaproteobacteria,2JQ6H@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the acetylglutamate kinase family. ArgB subfamily	argB	-	2.7.2.8	ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R02649	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase
DYD3_k127_3495017_2	1122137.AQXF01000001_gene2897	5.162e-103	352.0	COG5330@1|root,COG5330@2|Bacteria,1R4CF@1224|Proteobacteria,2TYQC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
DYD3_k127_3495017_4	331869.BAL199_15032	6.127e-38	150.0	COG2199@1|root,COG2199@2|Bacteria,1PPIP@1224|Proteobacteria,2U091@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	COG2202 FOG PAS PAC domain	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,PAS,PAS_4,PAS_9
DYD3_k127_3534315_2	1038858.AXBA01000038_gene5054	2.659e-105	353.0	COG0845@1|root,COG0845@2|Bacteria,1PVWV@1224|Proteobacteria,2TTJX@28211|Alphaproteobacteria,3EYC9@335928|Xanthobacteraceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	HlyD_D23
DYD3_k127_3534315_0	1122963.AUHB01000008_gene3431	0.0	1391.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,36Z9W@31993|Methylocystaceae	28211|Alphaproteobacteria	V	AcrB/AcrD/AcrF family	-	-	-	ko:K21134	-	M00821	-	-	ko00000,ko00002,ko02000	2.A.6.2.27	-	-	ACR_tran
DYD3_k127_3534315_3	1380394.JADL01000020_gene1835	2.723e-91	314.0	COG2114@1|root,COG2114@2|Bacteria,1MWHK@1224|Proteobacteria,2TR2J@28211|Alphaproteobacteria,2JQ73@204441|Rhodospirillales	204441|Rhodospirillales	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
DYD3_k127_3534315_1	1382304.JNIL01000001_gene1410	4.516e-118	387.0	COG1072@1|root,COG1072@2|Bacteria,1TPHJ@1239|Firmicutes,4HA4K@91061|Bacilli	91061|Bacilli	F	Pantothenic acid kinase	coaA	GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.33	ko:K00867	ko00770,ko01100,map00770,map01100	M00120	R02971,R03018,R04391	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PRK
DYD3_k127_3562489_8	582899.Hden_2809	6.769e-10	59.0	COG0804@1|root,COG0804@2|Bacteria,1MW26@1224|Proteobacteria,2TSZF@28211|Alphaproteobacteria,3N9FN@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	E	Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family	-	-	3.5.1.5	ko:K01428	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Urease_alpha
DYD3_k127_3562489_2	1131813.AQVT01000001_gene2194	2.155e-109	361.0	COG0831@1|root,COG0832@1|root,COG0831@2|Bacteria,COG0832@2|Bacteria,1RGXE@1224|Proteobacteria,2U0RZ@28211|Alphaproteobacteria,1JTWR@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	Belongs to the urease gamma subunit family	-	-	3.5.1.5	ko:K14048	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Urease_beta,Urease_gamma
DYD3_k127_3562489_6	1131813.AQVT01000001_gene2193	6.12e-48	183.0	COG0830@1|root,COG0830@2|Bacteria,1REFB@1224|Proteobacteria,2U8GB@28211|Alphaproteobacteria,1JS32@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter	-	-	-	ko:K03188	-	-	-	-	ko00000	-	-	-	UreF
DYD3_k127_3562489_5	1120792.JAFV01000001_gene3818	1.288e-49	181.0	COG2371@1|root,COG2371@2|Bacteria,1N3MU@1224|Proteobacteria,2UAJJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly	-	-	-	ko:K03187	-	-	-	-	ko00000	-	-	-	UreE_C,UreE_N
DYD3_k127_3562489_1	554065.XP_005843676.1	1.452e-131	432.0	COG0388@1|root,KOG0806@2759|Eukaryota,37YWU@33090|Viridiplantae,34KCD@3041|Chlorophyta	3041|Chlorophyta	E	Carbon-nitrogen hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	CN_hydrolase
DYD3_k127_3562489_7	1000565.METUNv1_00595	2.748e-36	151.0	2EA4W@1|root,3349T@2|Bacteria,1N7V8@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3562489_3	1000565.METUNv1_00594	4.67e-96	319.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2VM3A@28216|Betaproteobacteria,2KX98@206389|Rhodocyclales	206389|Rhodocyclales	S	Sel1-like repeats.	-	-	-	-	-	-	-	-	-	-	-	-	Sel1
DYD3_k127_3562489_4	1000565.METUNv1_00593	1.283e-91	312.0	COG4638@1|root,COG4638@2|Bacteria,1MWWD@1224|Proteobacteria	1224|Proteobacteria	P	Rieske (2fe-2S)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3562489_0	1000565.METUNv1_00592	0.0	1560.0	COG1520@1|root,COG1520@2|Bacteria,1QXZ5@1224|Proteobacteria,2VJ7Y@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	-	-	3.5.1.56	ko:K03418	ko00630,map00630	-	R02509	RC00111,RC00731	ko00000,ko00001,ko01000	-	-	-	Laminin_G_3
DYD3_k127_3573413_2	1380394.JADL01000004_gene5829	1.049e-155	509.0	COG1766@1|root,COG1766@2|Bacteria,1MUQR@1224|Proteobacteria,2TR6J@28211|Alphaproteobacteria,2JQ4P@204441|Rhodospirillales	204441|Rhodospirillales	N	The M ring may be actively involved in energy transduction	fliF	-	-	ko:K02409	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	YscJ_FliF,YscJ_FliF_C
DYD3_k127_3573413_3	414684.RC1_0672	4.913e-148	476.0	COG1536@1|root,COG1536@2|Bacteria,1MV9X@1224|Proteobacteria,2TRIV@28211|Alphaproteobacteria,2JQP1@204441|Rhodospirillales	204441|Rhodospirillales	N	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliG	-	-	ko:K02410	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliG_C,FliG_M,FliG_N
DYD3_k127_3573413_5	196490.AUEZ01000051_gene439	1.124e-22	105.0	COG1317@1|root,COG1317@2|Bacteria,1NSNC@1224|Proteobacteria,2TUID@28211|Alphaproteobacteria,3JUQR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Flagellar assembly protein FliH	fliH	-	-	ko:K02411	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliH
DYD3_k127_3573413_4	1207063.P24_15424	6.008e-41	153.0	COG1886@1|root,COG1886@2|Bacteria,1RGWT@1224|Proteobacteria,2UC6U@28211|Alphaproteobacteria,2JSR8@204441|Rhodospirillales	204441|Rhodospirillales	N	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliN	-	-	ko:K02417	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FliMN_C
DYD3_k127_3573413_1	1122929.KB908217_gene72	2.408e-193	613.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	flbD	-	-	ko:K10943	ko02020,ko05111,map02020,map05111	M00515	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD3_k127_3573413_0	1150626.PHAMO_30110	9.751e-292	911.0	COG1298@1|root,COG1298@2|Bacteria,1MUF3@1224|Proteobacteria,2TQUR@28211|Alphaproteobacteria,2JPYE@204441|Rhodospirillales	204441|Rhodospirillales	N	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin	flhA	-	-	ko:K02400	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FHIPEP
DYD3_k127_3573413_6	414684.RC1_0789	1.637e-22	105.0	COG1419@1|root,COG1419@2|Bacteria,1MUQW@1224|Proteobacteria,2U06N@28211|Alphaproteobacteria,2JP9H@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellar GTP-binding protein	flhF	-	-	ko:K02404	-	-	-	-	ko00000,ko02035	-	-	-	SRP54
DYD3_k127_3588130_1	522306.CAP2UW1_4159	2.204e-112	368.0	COG3220@1|root,COG3220@2|Bacteria,1MURE@1224|Proteobacteria,2VKP0@28216|Betaproteobacteria,1KQV5@119066|unclassified Betaproteobacteria	28216|Betaproteobacteria	S	Protein of unknown function (DUF692)	-	-	-	ko:K09930	-	-	-	-	ko00000	-	-	-	DUF2063,DUF692
DYD3_k127_3588130_4	1283300.ATXB01000001_gene2411	2.298e-31	140.0	COG3219@1|root,COG3219@2|Bacteria,1MZS2@1224|Proteobacteria,1S9N6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Putative DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF2063
DYD3_k127_3588130_2	378806.STAUR_6401	4.119e-83	291.0	COG4645@1|root,COG4645@2|Bacteria,1R5M3@1224|Proteobacteria	1224|Proteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	OpgC_C
DYD3_k127_3588130_0	1177179.A11A3_12348	5.362e-127	411.0	COG0625@1|root,COG0625@2|Bacteria,1RG4U@1224|Proteobacteria,1SFXZ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N_3
DYD3_k127_3588130_3	536019.Mesop_2292	3.697e-64	224.0	COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,1P1FH@1224|Proteobacteria,2TRGB@28211|Alphaproteobacteria,43IKK@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,HTH_18
DYD3_k127_35892_8	1415779.JOMH01000001_gene840	5.145e-84	308.0	COG2909@1|root,COG2909@2|Bacteria,1MVZZ@1224|Proteobacteria,1RN29@1236|Gammaproteobacteria,1X3EM@135614|Xanthomonadales	135614|Xanthomonadales	K	transcriptional regulator	acoK	-	-	ko:K03556	-	-	-	-	ko00000,ko03000	-	-	-	AAA_25,GerE,TPR_12
DYD3_k127_35892_2	1122604.JONR01000021_gene559	1.162e-276	865.0	COG0365@1|root,COG0365@2|Bacteria,1MUX7@1224|Proteobacteria,1RPGT@1236|Gammaproteobacteria,1X5HI@135614|Xanthomonadales	135614|Xanthomonadales	I	Acetyl-coenzyme A synthetase N-terminus	-	-	-	-	-	-	-	-	-	-	-	-	ACAS_N,AMP-binding
DYD3_k127_35892_9	1123256.KB907945_gene366	5.229e-72	260.0	28KRF@1|root,2ZA8Z@2|Bacteria,1R9AM@1224|Proteobacteria,1S9YY@1236|Gammaproteobacteria,1X9T3@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_35892_1	1123257.AUFV01000008_gene753	1.845e-313	976.0	COG0146@1|root,COG0146@2|Bacteria,1QU46@1224|Proteobacteria,1RS29@1236|Gammaproteobacteria,1X9XM@135614|Xanthomonadales	135614|Xanthomonadales	EQ	Hydantoinase B/oxoprolinase	-	-	-	-	-	-	-	-	-	-	-	-	Hydantoinase_B
DYD3_k127_35892_0	1122604.JONR01000027_gene3105	0.0	1062.0	COG0145@1|root,COG0145@2|Bacteria,1MU2Y@1224|Proteobacteria,1RN6C@1236|Gammaproteobacteria,1X6WD@135614|Xanthomonadales	135614|Xanthomonadales	EQ	Hydantoinase/oxoprolinase N-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	Hydant_A_N,Hydantoinase_A
DYD3_k127_35892_10	1122604.JONR01000027_gene3106	1.611e-57	209.0	COG4647@1|root,COG4647@2|Bacteria,1RD95@1224|Proteobacteria,1SBYR@1236|Gammaproteobacteria,1XAIV@135614|Xanthomonadales	135614|Xanthomonadales	Q	Acetone carboxylase gamma subunit	-	-	-	-	-	-	-	-	-	-	-	-	Acetone_carb_G
DYD3_k127_35892_3	1122604.JONR01000027_gene3107	4.443e-225	714.0	COG0145@1|root,COG0145@2|Bacteria,1R3RA@1224|Proteobacteria,1RYNP@1236|Gammaproteobacteria,1X9NY@135614|Xanthomonadales	135614|Xanthomonadales	EQ	Hydantoinase/oxoprolinase N-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	Hydant_A_N,Hydantoinase_A
DYD3_k127_35892_11	1280947.HY30_10015	3.125e-48	183.0	COG1414@1|root,COG1414@2|Bacteria,1MUNW@1224|Proteobacteria,2TSY8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	ko:K19333	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
DYD3_k127_35892_6	1114964.L485_21985	2.825e-165	523.0	COG4569@1|root,COG4569@2|Bacteria,1MV23@1224|Proteobacteria,2U26H@28211|Alphaproteobacteria,2K23D@204457|Sphingomonadales	204457|Sphingomonadales	H	Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD( ) and coenzyme A. Is the final enzyme in the meta- cleavage pathway for the degradation of aromatic compounds	-	-	1.2.1.10	ko:K04073	ko00360,ko00362,ko00620,ko00621,ko00622,ko00650,ko01100,ko01120,ko01220,map00360,map00362,map00620,map00621,map00622,map00650,map01100,map01120,map01220	M00545,M00569	R00228,R01172	RC00004,RC00184,RC01195	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	AcetDehyd-dimer,Semialdhyde_dh
DYD3_k127_35892_4	1114964.L485_21980	5.773e-191	616.0	COG0119@1|root,COG0119@2|Bacteria,1MVQG@1224|Proteobacteria,2TUB7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta-cleavage pathway for the degradation of aromatic compounds	-	-	4.1.3.39	ko:K01666	ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R00750	RC00307,RC00371	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	DmpG_comm,HMGL-like
DYD3_k127_35892_5	1502851.FG93_03238	2.891e-187	591.0	COG3214@1|root,COG3214@2|Bacteria,1N40B@1224|Proteobacteria,2TT7U@28211|Alphaproteobacteria,3JRUK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Winged helix DNA-binding domain	-	-	-	ko:K09927	-	-	-	-	ko00000	-	-	-	HTH_42
DYD3_k127_35892_13	1038858.AXBA01000006_gene966	2.039e-32	136.0	COG4957@1|root,COG4957@2|Bacteria,1RGUW@1224|Proteobacteria,2U99M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	ROS_MUCR
DYD3_k127_35892_12	438753.AZC_4100	6.063e-37	143.0	COG2331@1|root,COG2331@2|Bacteria,1NABD@1224|Proteobacteria,2UDQN@28211|Alphaproteobacteria,3EZW0@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Putative regulatory protein	MA20_23040	-	-	-	-	-	-	-	-	-	-	-	Zn-ribbon_8
DYD3_k127_35892_7	296591.Bpro_0569	2.299e-91	301.0	COG2421@1|root,COG2421@2|Bacteria,1MVRT@1224|Proteobacteria,2VIHC@28216|Betaproteobacteria,4ACGB@80864|Comamonadaceae	28216|Betaproteobacteria	C	acetamidase formamidase	fmdA	-	3.5.1.49	ko:K01455	ko00460,ko00630,ko00910,ko01200,map00460,map00630,map00910,map01200	-	R00524	RC02432,RC02810	ko00000,ko00001,ko01000	-	-	-	FmdA_AmdA
DYD3_k127_359936_3	1282876.BAOK01000002_gene563	9.367e-22	96.0	COG3205@1|root,COG3205@2|Bacteria,1N85D@1224|Proteobacteria,2UH8T@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2061)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2061
DYD3_k127_359936_2	1429916.X566_03870	6.248e-40	156.0	COG1051@1|root,COG1051@2|Bacteria,1N0YW@1224|Proteobacteria,2UC2E@28211|Alphaproteobacteria,3JY9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Nudix hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_359936_0	314231.FP2506_14809	1.344e-201	646.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TSG6@28211|Alphaproteobacteria,2PJDU@255475|Aurantimonadaceae	28211|Alphaproteobacteria	C	FAD linked oxidases, C-terminal domain	glcD	-	1.1.3.15	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_359936_1	472175.EL18_02035	1.619e-43	168.0	COG0277@1|root,COG0277@2|Bacteria,1MVYV@1224|Proteobacteria,2TRA7@28211|Alphaproteobacteria,43GYD@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	FAD linked	glcE	-	-	ko:K11472	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_3611123_3	316055.RPE_3958	1.027e-67	232.0	COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,2U70T@28211|Alphaproteobacteria,3JY1U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the MsrB Met sulfoxide reductase family	msrB	-	1.8.4.12	ko:K07305	-	-	-	-	ko00000,ko01000	-	-	-	SelR
DYD3_k127_3611123_0	438753.AZC_2089	2.723e-137	451.0	COG4529@1|root,COG4529@2|Bacteria,1MU3U@1224|Proteobacteria,2TUBM@28211|Alphaproteobacteria,3EZGU@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	FAD-NAD(P)-binding	-	-	3.1.2.6	ko:K01069	ko00620,map00620	-	R01736	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	NAD_binding_9
DYD3_k127_3611123_1	1121033.AUCF01000045_gene3993	4.24e-108	364.0	COG3239@1|root,COG3239@2|Bacteria,1MY4I@1224|Proteobacteria,2TUF8@28211|Alphaproteobacteria,2JPIH@204441|Rhodospirillales	204441|Rhodospirillales	I	Fatty acid desaturase	-	-	1.14.19.23,1.14.19.45	ko:K10255	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
DYD3_k127_3611123_5	349163.Acry_1649	4.956e-48	181.0	COG1028@1|root,COG1028@2|Bacteria,1MUUV@1224|Proteobacteria,2TR0A@28211|Alphaproteobacteria,2JWK9@204441|Rhodospirillales	204441|Rhodospirillales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_3611123_7	1280941.HY2_01680	4.566e-09	59.0	COG5510@1|root,COG5510@2|Bacteria	2|Bacteria	S	response to toxic substance	ecnB	-	-	ko:K16347,ko:K16348	-	-	-	-	ko00000,ko02000	9.B.13.1.1	-	-	Entericidin
DYD3_k127_3611123_4	1121106.JQKB01000014_gene5732	9e-64	226.0	COG2135@1|root,COG2135@2|Bacteria,1RER4@1224|Proteobacteria,2U0W2@28211|Alphaproteobacteria,2JUB7@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the SOS response-associated peptidase family	-	-	-	-	-	-	-	-	-	-	-	-	SRAP
DYD3_k127_3611123_6	570952.ATVH01000011_gene634	1.792e-25	114.0	2C0RW@1|root,2ZBA6@2|Bacteria,1RJAD@1224|Proteobacteria,2VGKZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3611123_2	1125973.JNLC01000016_gene2835	6.852e-92	314.0	28IJD@1|root,2Z8KA@2|Bacteria,1P6EX@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3616602_0	522306.CAP2UW1_3240	2.104e-200	667.0	COG1404@1|root,COG2931@1|root,COG4935@1|root,COG1404@2|Bacteria,COG2931@2|Bacteria,COG4935@2|Bacteria,1MU7T@1224|Proteobacteria	1224|Proteobacteria	Q	COG2931, RTX toxins and related Ca2 -binding proteins	-	-	3.4.24.40	ko:K01406	ko01503,map01503	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	HCBP_related,HemolysinCabind,PPC,Peptidase_M10_C,Reprolysin_4
DYD3_k127_3616602_1	543728.Vapar_6089	2.824e-95	320.0	COG3639@1|root,COG3639@2|Bacteria,1MW4F@1224|Proteobacteria,2VI8W@28216|Betaproteobacteria,4ABGX@80864|Comamonadaceae	28216|Betaproteobacteria	P	phosphonate ABC transporter, inner membrane subunit	phnE	-	-	ko:K02042	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.9	-	-	BPD_transp_1
DYD3_k127_3617891_5	1121861.KB899910_gene670	5.643e-60	215.0	COG4455@1|root,COG4455@2|Bacteria,1MWHI@1224|Proteobacteria,2TX82@28211|Alphaproteobacteria,2JVHP@204441|Rhodospirillales	204441|Rhodospirillales	S	ImpE protein	-	-	-	ko:K11898	-	-	-	-	ko00000,ko02044	-	-	-	ImpE,TPR_19
DYD3_k127_3617891_2	1121861.KB899910_gene671	2.316e-136	452.0	COG3517@1|root,COG3517@2|Bacteria,1MU5C@1224|Proteobacteria,2TV25@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Type VI secretion protein, EvpB/VC_A0108, tail sheath	impD	-	-	ko:K11899,ko:K11900	ko02025,map02025	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	VipB
DYD3_k127_3617891_1	1121861.KB899910_gene672	1.719e-249	779.0	COG3517@1|root,COG3517@2|Bacteria,1MU5C@1224|Proteobacteria,2TU2W@28211|Alphaproteobacteria,2JQDJ@204441|Rhodospirillales	204441|Rhodospirillales	S	Type VI secretion protein, EvpB/VC_A0108, tail sheath	-	-	-	ko:K11900	ko02025,map02025	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	VipB
DYD3_k127_3617891_3	1121861.KB899910_gene673	3.504e-72	246.0	COG3516@1|root,COG3516@2|Bacteria,1R9Y7@1224|Proteobacteria,2TVU7@28211|Alphaproteobacteria,2JVRR@204441|Rhodospirillales	204441|Rhodospirillales	S	Type VI secretion system, VipA, VC_A0107 or Hcp2	-	-	-	ko:K11901	ko02025,map02025	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	T6SS_VipA
DYD3_k127_3617891_4	1121861.KB899910_gene674	4.604e-68	251.0	COG3515@1|root,COG3515@2|Bacteria,1MY80@1224|Proteobacteria,2U5MC@28211|Alphaproteobacteria,2JU9I@204441|Rhodospirillales	204441|Rhodospirillales	S	ImpA, N-terminal, type VI secretion system	-	-	-	ko:K11902	ko02025,map02025	M00334	-	-	ko00000,ko00001,ko00002,ko02044	-	-	-	ImpA_N
DYD3_k127_3617891_0	1408418.JNJH01000025_gene61	0.0	1111.0	COG0542@1|root,COG0542@2|Bacteria,1MVBH@1224|Proteobacteria,2TRT7@28211|Alphaproteobacteria,2JV12@204441|Rhodospirillales	204441|Rhodospirillales	O	C-terminal, D2-small domain, of ClpB protein	-	-	-	ko:K11907	ko02025,ko03070,map02025,map03070	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	AAA,AAA_2,ClpB_D2-small
DYD3_k127_3623072_7	1144305.PMI02_05494	1.655e-29	130.0	COG2064@1|root,COG2064@2|Bacteria,1MYM8@1224|Proteobacteria,2UPQG@28211|Alphaproteobacteria,2K41A@204457|Sphingomonadales	204457|Sphingomonadales	NU	type II secretion system protein	-	-	-	ko:K12511	-	-	-	-	ko00000,ko02044	-	-	-	T2SSF
DYD3_k127_3623072_9	392499.Swit_3509	4.506e-15	84.0	COG0457@1|root,COG0457@2|Bacteria,1PTQB@1224|Proteobacteria,2UIBE@28211|Alphaproteobacteria,2K568@204457|Sphingomonadales	204457|Sphingomonadales	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_19
DYD3_k127_3623072_10	1479623.JHEL01000015_gene406	8.479e-14	76.0	COG3707@1|root,COG3707@2|Bacteria,2GK7T@201174|Actinobacteria,4FKD0@85023|Microbacteriaceae	201174|Actinobacteria	T	ANTAR	pdtaR	GO:0000160,GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0030312,GO:0035556,GO:0040007,GO:0043167,GO:0043168,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944	-	ko:K22010	-	M00839	-	-	ko00000,ko00002,ko02022	-	-	-	ANTAR,Response_reg
DYD3_k127_3623072_6	1255043.TVNIR_2491	7.275e-40	168.0	COG2202@1|root,COG2203@1|root,COG4191@1|root,COG2202@2|Bacteria,COG2203@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RQIN@1236|Gammaproteobacteria,1WXV5@135613|Chromatiales	135613|Chromatiales	T	Histidine kinase	-	-	2.7.13.3	ko:K10125	ko02020,map02020	M00504	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	GAF,HATPase_c,HisKA,PAS_3,dCache_1
DYD3_k127_3623072_8	1131814.JAFO01000001_gene3854	6.978e-22	108.0	COG1846@1|root,COG2204@1|root,COG1846@2|Bacteria,COG2204@2|Bacteria,1N0NQ@1224|Proteobacteria,2UEIA@28211|Alphaproteobacteria,3EZ16@335928|Xanthobacteraceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_27,PAS_3,Response_reg
DYD3_k127_3623072_4	1320556.AVBP01000015_gene905	5.647e-59	214.0	COG1075@1|root,COG1075@2|Bacteria,1NJNA@1224|Proteobacteria,2TSQC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Alpha beta hydrolase	MA20_16655	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6,DUF676,Hydrolase_4
DYD3_k127_3623072_5	1207063.P24_15856	3.299e-57	205.0	COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,2TU17@28211|Alphaproteobacteria,2JSXW@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the glutathione peroxidase family	-	-	1.11.1.9	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	-	R00274,R07034,R07035	RC00011,RC00982	ko00000,ko00001,ko01000	-	-	-	GSHPx
DYD3_k127_3623072_1	744979.R2A130_2850	3.941e-82	283.0	COG1075@1|root,COG1075@2|Bacteria,1NJNA@1224|Proteobacteria,2TSQC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Alpha beta hydrolase	MA20_16655	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6,DUF676,Hydrolase_4
DYD3_k127_3623072_0	1095769.CAHF01000011_gene2589	6.32e-101	343.0	COG2733@1|root,COG2733@2|Bacteria,1MX3G@1224|Proteobacteria,2VJZ1@28216|Betaproteobacteria,4744N@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Protein of unknown function (DUF445)	-	-	-	-	-	-	-	-	-	-	-	-	DUF445
DYD3_k127_3623072_3	614083.AWQR01000002_gene3007	1.243e-60	225.0	COG0300@1|root,COG0300@2|Bacteria,1N4CC@1224|Proteobacteria,2VJGF@28216|Betaproteobacteria,4A9W8@80864|Comamonadaceae	28216|Betaproteobacteria	S	KR domain	-	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
DYD3_k127_3623072_2	215803.DB30_6893	8.545e-75	265.0	COG2267@1|root,COG2267@2|Bacteria,1MVDA@1224|Proteobacteria,42RFJ@68525|delta/epsilon subdivisions,2WP11@28221|Deltaproteobacteria,2YUVM@29|Myxococcales	28221|Deltaproteobacteria	I	Protein of unknown function (DUF3089)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3089
DYD3_k127_3627330_0	1217720.ALOX01000088_gene3066	0.0	1079.0	COG1429@1|root,COG1429@2|Bacteria,1MU5W@1224|Proteobacteria,2TQVD@28211|Alphaproteobacteria,2JQI4@204441|Rhodospirillales	204441|Rhodospirillales	H	COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases	cobN	-	6.6.1.2	ko:K02230	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobN-Mg_chel
DYD3_k127_3627330_1	1296990.H845_2986	1.524e-22	111.0	COG0155@1|root,COG0155@2|Bacteria,1N541@1224|Proteobacteria,2TQTT@28211|Alphaproteobacteria,2JWJZ@204441|Rhodospirillales	204441|Rhodospirillales	C	Nitrite/Sulfite reductase ferredoxin-like half domain	-	-	1.14.13.83	ko:K02229	ko00860,ko01100,map00860,map01100	-	R05217	RC01979	ko00000,ko00001,ko01000	-	-	-	NIR_SIR,NIR_SIR_ferr
DYD3_k127_36411_1	998088.B565_2793	1.068e-77	272.0	COG0381@1|root,COG0381@2|Bacteria,1MWZN@1224|Proteobacteria,1RW06@1236|Gammaproteobacteria,1Y5D3@135624|Aeromonadales	135624|Aeromonadales	M	UDP-N-acetylglucosamine 2-epimerase	-	-	5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
DYD3_k127_36411_2	555778.Hneap_0634	4.004e-52	192.0	COG1083@1|root,COG1083@2|Bacteria,1QACI@1224|Proteobacteria,1RR92@1236|Gammaproteobacteria,1WYZQ@135613|Chromatiales	135613|Chromatiales	M	Acylneuraminate cytidylyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	CTP_transf_3
DYD3_k127_36411_0	324925.Ppha_0524	2.262e-162	519.0	COG0451@1|root,COG0451@2|Bacteria	2|Bacteria	GM	ADP-glyceromanno-heptose 6-epimerase activity	-	-	4.2.1.46,5.1.3.2	ko:K01710,ko:K01784	ko00052,ko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00052,map00520,map00521,map00523,map00525,map01055,map01100,map01130	M00361,M00362,M00632,M00793	R00291,R02984,R06513	RC00289,RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD3_k127_366019_3	1231185.BAMP01000039_gene1036	3.304e-92	306.0	COG2227@1|root,COG2227@2|Bacteria,1MU89@1224|Proteobacteria,2TRIK@28211|Alphaproteobacteria,43HIG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	H	O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway	ubiG	-	2.1.1.222,2.1.1.64	ko:K00568	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04988,R05614,R08769,R08781	RC00003,RC00392,RC01895	ko00000,ko00001,ko00002,ko01000	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_366019_1	1279038.KB907337_gene358	7.306e-205	643.0	COG0527@1|root,COG0527@2|Bacteria,1MW3H@1224|Proteobacteria,2TRFA@28211|Alphaproteobacteria,2JPI1@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the aspartokinase family	lysC	-	2.7.2.4	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase,ACT,ACT_7
DYD3_k127_366019_2	1121861.KB899941_gene3868	1.247e-163	520.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,2TQRT@28211|Alphaproteobacteria,2JPRU@204441|Rhodospirillales	204441|Rhodospirillales	S	2-nitropropane dioxygenase	fabK	-	1.3.1.9	ko:K02371	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00083	R04429,R04724,R04955,R04958,R04961,R04966,R04969,R07765	RC00052,RC00076	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	NMO
DYD3_k127_366019_0	1380394.JADL01000021_gene1860	4.829e-287	912.0	COG3605@1|root,COG3605@2|Bacteria,1QTTV@1224|Proteobacteria,2TR3Z@28211|Alphaproteobacteria,2JQ06@204441|Rhodospirillales	204441|Rhodospirillales	T	Belongs to the PEP-utilizing enzyme family	ptsP	-	2.7.3.9	ko:K08484	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	GAF_2,PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C
DYD3_k127_366019_4	1121033.AUCF01000003_gene3180	2.6e-23	109.0	COG1426@1|root,COG1426@2|Bacteria,1MYWX@1224|Proteobacteria,2TQM2@28211|Alphaproteobacteria,2JT11@204441|Rhodospirillales	204441|Rhodospirillales	D	Domain of unknown function (DUF4115)	-	-	-	ko:K15539	-	-	-	-	ko00000	-	-	-	DUF4115,HTH_25
DYD3_k127_3681279_7	710685.MycrhN_3050	8.574e-11	66.0	2DB9W@1|root,2Z7Z9@2|Bacteria,2GNW4@201174|Actinobacteria	201174|Actinobacteria	S	PFAM Methane phenol toluene hydroxylase	-	-	1.14.13.25	ko:K16158	ko00680,ko01100,ko01120,ko01200,ko01220,map00680,map01100,map01120,map01200,map01220	M00174	R01142	RC00173	ko00000,ko00001,ko00002,ko01000	-	-	-	Phenol_Hydrox
DYD3_k127_3681279_6	710685.MycrhN_3051	2.679e-27	119.0	2928A@1|root,2ZPSX@2|Bacteria	2|Bacteria	S	MmoB/DmpM family	-	GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0008150,GO:0008152,GO:0009987,GO:0015049,GO:0015050,GO:0015947,GO:0016491,GO:0016705,GO:0016709,GO:0032991,GO:0043446,GO:0044237,GO:0055114,GO:0071704,GO:1902494	-	ko:K16160	ko00680,ko01100,ko01120,ko01200,ko01220,map00680,map01100,map01120,map01200,map01220	M00174	R01142	RC00173	ko00000,ko00001,ko00002	-	-	-	MmoB_DmpM
DYD3_k127_3681279_1	710685.MycrhN_3053	2.531e-77	271.0	COG2871@1|root,COG2871@2|Bacteria	2|Bacteria	C	sodium ion transport	nqrF	-	1.14.13.25,1.6.5.8	ko:K00351,ko:K16161,ko:K18225	ko00640,ko00680,ko01100,ko01120,ko01200,ko01220,map00640,map00680,map01100,map01120,map01200,map01220	M00174	R01142,R10702	RC00173,RC03249	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_3681279_5	710685.MycrhN_3054	3.425e-30	126.0	2C9VH@1|root,30P72@2|Bacteria	2|Bacteria	Q	Methane monooxygenase, hydrolase gamma chain	-	-	1.14.13.25	ko:K16159	ko00680,ko01100,ko01120,ko01200,ko01220,map00680,map01100,map01120,map01200,map01220	M00174	R01142	RC00173	ko00000,ko00001,ko00002,ko01000	-	-	-	MeMO_Hyd_G
DYD3_k127_3681279_2	244582.JQAK01000004_gene155	1.212e-53	195.0	COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2TU3T@28211|Alphaproteobacteria,47F6P@766|Rickettsiales	766|Rickettsiales	C	radicals which are normally produced within the cells and which are toxic to biological systems	sodB	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
DYD3_k127_3681279_3	1131814.JAFO01000001_gene514	1.227e-47	174.0	COG1017@1|root,COG1017@2|Bacteria,1QVJP@1224|Proteobacteria,2U5M6@28211|Alphaproteobacteria,3EZPA@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Belongs to the globin family	MA20_17055	-	1.14.12.17	ko:K05916	ko05132,map05132	-	-	-	ko00000,ko00001,ko01000	-	-	-	Globin
DYD3_k127_3681279_4	69279.BG36_14060	1.99e-31	138.0	2EVJY@1|root,33P02@2|Bacteria,1NMNA@1224|Proteobacteria,2UMPN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3681279_0	991905.SL003B_2622	6.578e-80	269.0	COG1067@1|root,COG4943@1|root,COG1067@2|Bacteria,COG4943@2|Bacteria,1MWGB@1224|Proteobacteria,2TU7G@28211|Alphaproteobacteria,4BRIG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_32,Lon_C
DYD3_k127_3691939_3	323098.Nwi_2509	2.453e-06	53.0	2E86V@1|root,332K3@2|Bacteria,1RIS4@1224|Proteobacteria,2U9AV@28211|Alphaproteobacteria,3JZHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4282)	MA20_05355	-	-	-	-	-	-	-	-	-	-	-	DUF4282
DYD3_k127_3691939_0	414684.RC1_1718	2.685e-214	692.0	COG5310@1|root,COG5310@2|Bacteria,1MUZB@1224|Proteobacteria,2TRTR@28211|Alphaproteobacteria,2JR46@204441|Rhodospirillales	204441|Rhodospirillales	Q	Homospermidine synthase	hss	-	2.5.1.44	ko:K00808	ko00960,ko01110,map00960,map01110	-	R00018	RC00053	ko00000,ko00001,ko01000	-	-	-	Sacchrp_dh_C,Sacchrp_dh_NADP
DYD3_k127_3691939_2	1122929.KB908230_gene3717	7.901e-37	161.0	COG1295@1|root,COG1295@2|Bacteria,1MXQA@1224|Proteobacteria,2TTN5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Ribonuclease, BN	rbn	-	-	ko:K07058	-	-	-	-	ko00000	-	-	-	Virul_fac_BrkB
DYD3_k127_3691939_1	1316936.K678_04724	5.851e-39	150.0	COG0835@1|root,COG0835@2|Bacteria,1RAH1@1224|Proteobacteria,2U59Y@28211|Alphaproteobacteria,2JS6R@204441|Rhodospirillales	204441|Rhodospirillales	NT	COG0835 Chemotaxis signal transduction protein	cheW	-	-	ko:K03408	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheW
DYD3_k127_3702324_0	1121033.AUCF01000028_gene398	2.032e-141	454.0	COG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,2TR9Q@28211|Alphaproteobacteria,2JPF6@204441|Rhodospirillales	204441|Rhodospirillales	K	RNA polymerase sigma	rpoH	-	-	ko:K03089	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r1_2,Sigma70_r2,Sigma70_r4
DYD3_k127_3702324_1	1316936.K678_07248	2.198e-107	357.0	COG0564@1|root,COG0564@2|Bacteria,1MUBN@1224|Proteobacteria,2TSBK@28211|Alphaproteobacteria,2JQ4Y@204441|Rhodospirillales	204441|Rhodospirillales	J	Responsible for synthesis of pseudouridine from uracil	rluD	-	5.4.99.23	ko:K06180	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_3705617_0	1131814.JAFO01000001_gene3315	0.0	3902.0	COG3459@1|root,COG3459@2|Bacteria,1MVNX@1224|Proteobacteria,2TSAJ@28211|Alphaproteobacteria,3EYBF@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase 36 superfamily, catalytic domain	ndvB	GO:0003674,GO:0003824,GO:0016740,GO:0016757	2.4.1.321	ko:K13688,ko:K18786	-	-	R10832	RC00397	ko00000,ko01000,ko01003	-	GH94,GT84	-	Glyco_hydro_36,Glyco_transf_36,Glycoamylase
DYD3_k127_3705617_16	1282876.BAOK01000001_gene1585	5.857e-24	104.0	COG4391@1|root,COG4391@2|Bacteria,1MZNK@1224|Proteobacteria,2UD0H@28211|Alphaproteobacteria,4BSNH@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Zinc-finger domain	MA20_32275	-	-	-	-	-	-	-	-	-	-	-	zf-CHCC
DYD3_k127_3705617_18	1408418.JNJH01000034_gene779	3.836e-10	65.0	2EM0K@1|root,33EQ3@2|Bacteria,1NIHC@1224|Proteobacteria,2UMWX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3705617_15	1220535.IMCC14465_04180	2.414e-41	158.0	COG2001@1|root,COG2001@2|Bacteria,1RHCG@1224|Proteobacteria,2UD3W@28211|Alphaproteobacteria,4BQSM@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	MraZ protein, putative antitoxin-like	mraZ	-	-	ko:K03925	-	-	-	-	ko00000	-	-	-	MraZ
DYD3_k127_3705617_11	1316936.K678_02765	5.953e-111	372.0	COG0275@1|root,COG0275@2|Bacteria,1MUT4@1224|Proteobacteria,2TRQA@28211|Alphaproteobacteria,2JPTV@204441|Rhodospirillales	204441|Rhodospirillales	J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	rsmH	-	2.1.1.199	ko:K03438	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltransf_5
DYD3_k127_3705617_17	402881.Plav_2414	4.009e-17	93.0	COG5462@1|root,COG5462@2|Bacteria,1N0IS@1224|Proteobacteria,2UC96@28211|Alphaproteobacteria,1JPI8@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	secreted (periplasmic) protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3705617_2	331869.BAL199_04889	1.268e-200	650.0	COG0768@1|root,COG0768@2|Bacteria,1MUNY@1224|Proteobacteria,2TSHQ@28211|Alphaproteobacteria,4BPUT@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	PFAM Penicillin binding protein transpeptidase domain	ftsI	-	3.4.16.4	ko:K03587	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011,ko03036	-	-	-	PBP_dimer,Transpeptidase
DYD3_k127_3705617_6	883080.HMPREF9697_03857	2.454e-146	478.0	COG0769@1|root,COG0769@2|Bacteria,1MU6P@1224|Proteobacteria,2TVXI@28211|Alphaproteobacteria,3JS79@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan	murE	-	6.3.2.13	ko:K01928	ko00300,ko00550,map00300,map00550	-	R02788	RC00064,RC00090	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_3705617_9	1380394.JADL01000016_gene424	9.501e-134	453.0	COG0770@1|root,COG0770@2|Bacteria,1QTSF@1224|Proteobacteria,2TR0Q@28211|Alphaproteobacteria,2JQZC@204441|Rhodospirillales	204441|Rhodospirillales	M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein	murF	-	6.3.2.10	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	-	R04573,R04617	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_3705617_3	1244869.H261_14650	2.229e-178	564.0	COG0472@1|root,COG0472@2|Bacteria,1MUTK@1224|Proteobacteria,2TRUG@28211|Alphaproteobacteria,2JQ3T@204441|Rhodospirillales	204441|Rhodospirillales	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	mraY	-	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	-	R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146	-	-	Glycos_transf_4,MraY_sig1
DYD3_k127_3705617_8	1292034.OR37_01581	1.061e-140	460.0	COG0771@1|root,COG0771@2|Bacteria,1MVYD@1224|Proteobacteria,2TTE8@28211|Alphaproteobacteria,2KF97@204458|Caulobacterales	204458|Caulobacterales	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	murD	-	6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase_C,Mur_ligase_M
DYD3_k127_3705617_7	1238182.C882_0072	8.114e-141	458.0	COG0772@1|root,COG0772@2|Bacteria,1MVDB@1224|Proteobacteria,2TQSA@28211|Alphaproteobacteria,2JP9E@204441|Rhodospirillales	204441|Rhodospirillales	D	Belongs to the SEDS family	ftsW	-	-	ko:K03588	ko04112,map04112	-	-	-	ko00000,ko00001,ko02000,ko03036	2.A.103.1	-	-	FTSW_RODA_SPOVE
DYD3_k127_3705617_13	1090318.ATTI01000001_gene2890	8.488e-101	351.0	COG0707@1|root,COG0707@2|Bacteria,1MVIB@1224|Proteobacteria,2TSEY@28211|Alphaproteobacteria,2K0YF@204457|Sphingomonadales	204457|Sphingomonadales	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)	murG	-	2.4.1.227	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	-	R05032,R05662	RC00005,RC00049	ko00000,ko00001,ko01000,ko01011	-	GT28	-	Glyco_tran_28_C,Glyco_transf_28
DYD3_k127_3705617_1	1238182.C882_0074	5.785e-225	705.0	COG0773@1|root,COG0773@2|Bacteria,1MV68@1224|Proteobacteria,2TRT0@28211|Alphaproteobacteria,2JQAK@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the MurCDEF family	murC	-	6.3.2.8	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R03193	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD3_k127_3705617_12	1177928.TH2_06368	1.972e-108	366.0	COG0812@1|root,COG0812@2|Bacteria,1MXDH@1224|Proteobacteria,2TRQR@28211|Alphaproteobacteria,2JPRS@204441|Rhodospirillales	204441|Rhodospirillales	M	Cell wall formation	murB	-	1.3.1.98	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R03191,R03192	RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	FAD_binding_4,MurB_C
DYD3_k127_3705617_10	402881.Plav_2424	9.494e-117	389.0	COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,2TREC@28211|Alphaproteobacteria,1JN01@119043|Rhodobiaceae	28211|Alphaproteobacteria	M	D-ala D-ala ligase N-terminus	ddl	-	1.3.1.98,6.3.2.4	ko:K00075,ko:K01921	ko00473,ko00520,ko00550,ko01100,ko01502,map00473,map00520,map00550,map01100,map01502	-	R01150,R03191,R03192	RC00064,RC00141,RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Dala_Dala_lig_N
DYD3_k127_3705617_14	1122135.KB893146_gene1597	1.967e-56	210.0	COG1589@1|root,COG1589@2|Bacteria,1MY1Q@1224|Proteobacteria,2TQPU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	Cell division protein FtsQ	ftsQ	-	-	ko:K03589	ko04112,map04112	-	-	-	ko00000,ko00001,ko03036	-	-	-	FtsQ,POTRA_1
DYD3_k127_3705617_5	402881.Plav_2426	1.537e-163	527.0	COG0849@1|root,COG0849@2|Bacteria,1MUSR@1224|Proteobacteria,2TQZB@28211|Alphaproteobacteria,1JNKE@119043|Rhodobiaceae	28211|Alphaproteobacteria	D	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring	ftsA	-	-	ko:K03590	ko04112,map04112	-	-	-	ko00000,ko00001,ko03036,ko04812	-	-	-	FtsA,SHS2_FTSA
DYD3_k127_3705617_4	1121033.AUCF01000021_gene2864	4.776e-165	527.0	COG0206@1|root,COG0206@2|Bacteria,1MV2X@1224|Proteobacteria,2TS1Q@28211|Alphaproteobacteria,2JPWE@204441|Rhodospirillales	204441|Rhodospirillales	D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity	ftsZ	-	-	ko:K03531	ko04112,map04112	-	-	-	ko00000,ko00001,ko02048,ko03036,ko04812	-	-	-	FtsZ_C,Tubulin
DYD3_k127_3710877_0	1125973.JNLC01000012_gene831	3.431e-116	379.0	COG2059@1|root,COG2059@2|Bacteria,1MUBW@1224|Proteobacteria,2TRXF@28211|Alphaproteobacteria,3JSVF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TIGRFAM chromate transporter, chromate ion transporter (CHR) family	chrA	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
DYD3_k127_3710877_2	1121015.N789_07405	1.525e-55	209.0	COG2200@1|root,COG2200@2|Bacteria,1N299@1224|Proteobacteria,1S1MD@1236|Gammaproteobacteria,1XD68@135614|Xanthomonadales	135614|Xanthomonadales	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,Response_reg
DYD3_k127_3710877_1	331869.BAL199_13528	1.355e-113	372.0	COG2030@1|root,COG2030@2|Bacteria,1MUR2@1224|Proteobacteria,2TUM7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydrat_N,MaoC_dehydratas
DYD3_k127_3713455_3	1192759.AKIB01000041_gene593	5.078e-16	79.0	COG1961@1|root,COG1961@2|Bacteria,1MXXT@1224|Proteobacteria,2U9WZ@28211|Alphaproteobacteria,2K24P@204457|Sphingomonadales	204457|Sphingomonadales	L	Helix-turn-helix domain of resolvase	-	-	-	-	-	-	-	-	-	-	-	-	HTH_7,Resolvase
DYD3_k127_3713455_2	1454004.AW11_03974	2.9e-29	117.0	COG1961@1|root,COG1961@2|Bacteria,1MXXT@1224|Proteobacteria,2VN0J@28216|Betaproteobacteria	28216|Betaproteobacteria	L	PFAM Resolvase	-	-	-	-	-	-	-	-	-	-	-	-	HTH_7,Resolvase
DYD3_k127_3713455_5	1144310.PMI07_006500	6.541e-06	53.0	COG1961@1|root,COG1961@2|Bacteria,1MXXT@1224|Proteobacteria,2U9WZ@28211|Alphaproteobacteria,4BM2W@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Site-specific recombinases, DNA invertase Pin homologs	-	-	-	ko:K14060	-	-	-	-	ko00000	-	-	-	HTH_7,Resolvase
DYD3_k127_3713455_4	861208.AGROH133_14771	1.888e-13	71.0	COG1853@1|root,COG1853@2|Bacteria,1MXPE@1224|Proteobacteria,2U825@28211|Alphaproteobacteria,4BM6P@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
DYD3_k127_3713455_6	172088.AUGA01000070_gene7035	0.0001269	48.0	COG0582@1|root,COG0582@2|Bacteria,1N2H9@1224|Proteobacteria,2TS7K@28211|Alphaproteobacteria,3JWPB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Arm-DNA-bind_3,Phage_int_SAM_3,Phage_integrase
DYD3_k127_3713455_0	443152.MDG893_16752	5.297e-232	737.0	COG3103@1|root,COG3103@2|Bacteria,1QXFZ@1224|Proteobacteria,1RPAR@1236|Gammaproteobacteria,465YC@72275|Alteromonadaceae	1236|Gammaproteobacteria	T	Sh3 type 3 domain protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_3713455_1	159087.Daro_3776	3.806e-134	441.0	2C4IG@1|root,2Z8A1@2|Bacteria,1QTHZ@1224|Proteobacteria,2VN98@28216|Betaproteobacteria,2KVXJ@206389|Rhodocyclales	206389|Rhodocyclales	S	Outer membrane lipoprotein-sorting protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_3715643_10	414684.RC1_3003	3.081e-17	82.0	COG2821@1|root,COG2821@2|Bacteria,1MXD4@1224|Proteobacteria,2TS5S@28211|Alphaproteobacteria,2JQA2@204441|Rhodospirillales	204441|Rhodospirillales	M	membrane-bound lytic murein transglycosylase	mltA	-	-	ko:K08304	-	-	-	-	ko00000,ko01000,ko01011	-	GH102	-	3D,MltA
DYD3_k127_3715643_9	331869.BAL199_11166	1.981e-29	124.0	COG2840@1|root,COG2840@2|Bacteria,1RH34@1224|Proteobacteria,2UCM1@28211|Alphaproteobacteria,4BQTB@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Smr domain	smrA	-	-	-	-	-	-	-	-	-	-	-	Smr
DYD3_k127_3715643_3	1333998.M2A_2027	2.212e-110	364.0	COG2267@1|root,COG2267@2|Bacteria,1QTAP@1224|Proteobacteria,2TU8W@28211|Alphaproteobacteria,4BT6G@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_3715643_1	1041139.KB902682_gene2304	1.938e-238	741.0	COG0045@1|root,COG0045@2|Bacteria,1PYM0@1224|Proteobacteria,2U4VV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	PFAM ATP-grasp domain	-	-	-	-	-	-	-	-	-	-	-	-	ATP-grasp_2,Citrate_bind
DYD3_k127_3715643_0	1354722.JQLS01000008_gene2275	0.0	1461.0	COG0074@1|root,COG0074@2|Bacteria,1R4KP@1224|Proteobacteria,2TVFC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Succinyl-CoA ligase like flavodoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	CoA_binding,Succ_CoA_lig
DYD3_k127_3715643_4	1122604.JONR01000003_gene1581	2.214e-99	335.0	2DBF0@1|root,2Z8VT@2|Bacteria,1RJQR@1224|Proteobacteria,1T69I@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	3-oxo-5-alpha-steroid 4-dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Steroid_dh
DYD3_k127_3715643_7	1088721.NSU_3676	8.738e-56	210.0	COG0457@1|root,COG0457@2|Bacteria,1QZNZ@1224|Proteobacteria,2TYAT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF560)	-	-	-	-	-	-	-	-	-	-	-	-	DUF560
DYD3_k127_3715643_8	349521.HCH_06521	2.34e-40	155.0	2EQHV@1|root,33I3V@2|Bacteria,1NYFD@1224|Proteobacteria,1SQYI@1236|Gammaproteobacteria,1XPNM@135619|Oceanospirillales	135619|Oceanospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3715643_2	402881.Plav_1240	2.9e-208	676.0	COG1220@1|root,COG1220@2|Bacteria,1MVK9@1224|Proteobacteria,2TRXC@28211|Alphaproteobacteria,1JNNV@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis	hslU	-	-	ko:K03667	-	-	-	-	ko00000,ko03110	-	-	-	AAA_2,ClpB_D2-small
DYD3_k127_3715643_5	666684.AfiDRAFT_1533	4.338e-85	286.0	COG5405@1|root,COG5405@2|Bacteria,1MVF2@1224|Proteobacteria,2TRRE@28211|Alphaproteobacteria,3JRD8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery	hslV	-	3.4.25.2	ko:K01419	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Proteasome
DYD3_k127_3715643_6	1121033.AUCF01000003_gene3445	4.431e-59	210.0	COG2173@1|root,COG2173@2|Bacteria,1RENK@1224|Proteobacteria,2TRK8@28211|Alphaproteobacteria,2JRUE@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide	ddpX	-	3.4.13.22	ko:K08641	ko01502,ko02020,map01502,map02020	M00651	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504	-	-	-	Peptidase_M15
DYD3_k127_3715643_11	269796.Rru_A0754	2.009e-16	84.0	28Z9U@1|root,2ZM1P@2|Bacteria,1RBFF@1224|Proteobacteria,2U5YY@28211|Alphaproteobacteria,2JWGY@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3717304_3	1380394.JADL01000010_gene4126	9.654e-69	236.0	COG0221@1|root,COG0221@2|Bacteria,1RA2F@1224|Proteobacteria,2TQZM@28211|Alphaproteobacteria,2JSIR@204441|Rhodospirillales	204441|Rhodospirillales	C	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions	ppa	-	3.6.1.1	ko:K01507	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyrophosphatase
DYD3_k127_3717304_7	502025.Hoch_1456	3.413e-08	61.0	COG1716@1|root,COG2204@1|root,COG1716@2|Bacteria,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,2Z3I1@29|Myxococcales	28221|Deltaproteobacteria	K	Forkhead associated domain	-	-	-	-	-	-	-	-	-	-	-	-	FHA,HTH_8,Response_reg,Sigma54_activat
DYD3_k127_3717304_4	1333998.M2A_1585	1.71e-65	235.0	COG0697@1|root,COG0697@2|Bacteria,1PHRI@1224|Proteobacteria,2TUAQ@28211|Alphaproteobacteria,4BQFV@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	EG	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	MA20_39710	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_3717304_6	1121033.AUCF01000001_gene2120	9.812e-53	197.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,2JQUN@204441|Rhodospirillales	204441|Rhodospirillales	K	LysR substrate binding domain	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_3717304_1	935557.ATYB01000008_gene5732	1.179e-166	544.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,4B8MB@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	dctD	-	-	ko:K10126	ko02020,map02020	M00504	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD3_k127_3717304_2	1120792.JAFV01000001_gene3879	3.014e-153	505.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,36XP2@31993|Methylocystaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	dctB	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.13.3	ko:K10125	ko02020,map02020	M00504	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,dCache_1
DYD3_k127_3717304_0	1054213.HMPREF9946_00505	6.536e-198	633.0	COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,2TRET@28211|Alphaproteobacteria,2JPKH@204441|Rhodospirillales	204441|Rhodospirillales	U	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family	dctA	-	-	ko:K11103	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.23.1.3,2.A.23.1.6,2.A.23.1.7	-	-	SDF
DYD3_k127_3717304_5	864069.MicloDRAFT_00028250	9.881e-63	218.0	COG0789@1|root,COG0789@2|Bacteria,1RH2U@1224|Proteobacteria,2U73A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	redox-sensitive transcriptional activator SoxR	soxR	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0044424,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051537,GO:0051540	-	ko:K13639	-	-	-	-	ko00000,ko03000	-	-	-	MerR,MerR-DNA-bind,MerR_1
DYD3_k127_3728759_8	338969.Rfer_0520	6.061e-18	88.0	COG2119@1|root,COG2119@2|Bacteria,1RDDV@1224|Proteobacteria,2VQ6X@28216|Betaproteobacteria,4A9XN@80864|Comamonadaceae	28216|Betaproteobacteria	S	Uncharacterized protein family UPF0016	-	-	-	-	-	-	-	-	-	-	-	-	UPF0016
DYD3_k127_3728759_6	426114.THI_0813	1.257e-36	141.0	COG0346@1|root,COG0346@2|Bacteria,1N0WM@1224|Proteobacteria,2VSM4@28216|Betaproteobacteria,1KMGV@119065|unclassified Burkholderiales	28216|Betaproteobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_3728759_5	450851.PHZ_c3078	1.45e-42	163.0	COG0748@1|root,COG0748@2|Bacteria,1QXEB@1224|Proteobacteria,2UAPX@28211|Alphaproteobacteria,2KIZU@204458|Caulobacterales	204458|Caulobacterales	P	Pyridoxamine 5'-phosphate oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Putative_PNPOx
DYD3_k127_3728759_9	991905.SL003B_0057	2.461e-15	89.0	2D71I@1|root,32TN6@2|Bacteria,1N2CA@1224|Proteobacteria,2UEWY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3728759_1	1207063.P24_02616	3.298e-106	347.0	COG0131@1|root,COG0131@2|Bacteria,1MWBS@1224|Proteobacteria,2TTVV@28211|Alphaproteobacteria,2JPDI@204441|Rhodospirillales	204441|Rhodospirillales	E	imidazoleglycerol-phosphate dehydratase	hisB	-	4.2.1.19	ko:K01693	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R03457	RC00932	ko00000,ko00001,ko00002,ko01000	-	-	-	IGPD
DYD3_k127_3728759_4	439235.Dalk_0634	2.386e-47	190.0	COG0118@1|root,COG0118@2|Bacteria,1MU4X@1224|Proteobacteria,42QX8@68525|delta/epsilon subdivisions,2WP57@28221|Deltaproteobacteria,2MNGK@213118|Desulfobacterales	28221|Deltaproteobacteria	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR	-	-	-	ko:K02501	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04558	RC00010,RC01190,RC01943	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase
DYD3_k127_3728759_2	189753.AXAS01000031_gene4460	7.554e-104	351.0	COG0106@1|root,COG0106@2|Bacteria,1MW6S@1224|Proteobacteria,2TRSG@28211|Alphaproteobacteria,3JQMK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase	hisA	GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.3.1.16	ko:K01814	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04640	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	His_biosynth
DYD3_k127_3728759_0	269796.Rru_A3594	8.084e-117	385.0	COG0107@1|root,COG0107@2|Bacteria,1MUS0@1224|Proteobacteria,2TQXD@28211|Alphaproteobacteria,2JPAN@204441|Rhodospirillales	204441|Rhodospirillales	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit	hisF	-	-	ko:K02500	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04558	RC00010,RC01190,RC01943	ko00000,ko00001,ko00002,ko01000	-	-	-	His_biosynth
DYD3_k127_3728759_7	1088869.GMO_23800	1.514e-25	111.0	COG0140@1|root,COG0140@2|Bacteria,1MZEE@1224|Proteobacteria,2UBU3@28211|Alphaproteobacteria,2JT7J@204441|Rhodospirillales	204441|Rhodospirillales	E	Phosphoribosyl-ATP	hisE	-	3.6.1.31	ko:K01523	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	PRA-PH
DYD3_k127_3728759_3	414684.RC1_3301	2.778e-51	191.0	COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,2U956@28211|Alphaproteobacteria,2JSVP@204441|Rhodospirillales	204441|Rhodospirillales	FG	COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	-	-	-	-	-	-	-	-	-	-	-	-	HIT
DYD3_k127_3731580_0	1121033.AUCF01000010_gene4560	2.894e-149	481.0	COG0683@1|root,COG0683@2|Bacteria,1MWJ1@1224|Proteobacteria,2TT0T@28211|Alphaproteobacteria,2JQNJ@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
DYD3_k127_3731580_4	1131813.AQVT01000001_gene2262	9.247e-23	109.0	2C07J@1|root,32SWS@2|Bacteria,1N0NW@1224|Proteobacteria,2UCVR@28211|Alphaproteobacteria,1JV69@119045|Methylobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3731580_3	1380391.JIAS01000011_gene4797	1.771e-100	347.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TR61@28211|Alphaproteobacteria,2JPVM@204441|Rhodospirillales	204441|Rhodospirillales	E	branched-chain amino acid	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
DYD3_k127_3731580_2	1205680.CAKO01000007_gene4365	6.205e-115	385.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TQK1@28211|Alphaproteobacteria,2JP9T@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0411 ABC-type branched-chain amino acid transport systems, ATPase component	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
DYD3_k127_3731580_1	1207063.P24_18536	9.058e-146	469.0	COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TSJQ@28211|Alphaproteobacteria,2JPM5@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the binding-protein-dependent transport system permease family	livM	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2,DUF3382
DYD3_k127_3771298_0	1282876.BAOK01000001_gene1749	4.871e-184	589.0	COG2256@1|root,COG2256@2|Bacteria,1MUVS@1224|Proteobacteria,2TQVF@28211|Alphaproteobacteria,4BPAU@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	MgsA AAA+ ATPase C terminal	rarA	GO:0005575,GO:0005622,GO:0005623,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0030894,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576	-	ko:K07478	-	-	-	-	ko00000	-	-	-	AAA,AAA_assoc_2,MgsA_C,RuvB_N
DYD3_k127_3771298_1	414684.RC1_0429	2.191e-154	500.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TS6B@28211|Alphaproteobacteria,2JQX0@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the peptidase S1C family	-	-	-	-	-	-	-	-	-	-	-	-	PDZ_2,Trypsin_2
DYD3_k127_3771826_7	1097668.BYI23_C004940	1.358e-118	390.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,2VJT8@28216|Betaproteobacteria,1KCK1@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	-	-	-	-	-	-	-	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_3771826_1	1122929.KB908234_gene4070	6.624e-210	665.0	COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,2TSPJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Histidine ammonia-lyase	hutH	-	4.3.1.3	ko:K01745	ko00340,ko01100,map00340,map01100	M00045	R01168	RC00361	ko00000,ko00001,ko00002,ko01000	-	-	-	Lyase_aromatic
DYD3_k127_3771826_9	34007.IT40_03820	5.058e-68	241.0	COG0583@1|root,COG0583@2|Bacteria,1RHGG@1224|Proteobacteria,2VEX0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_3771826_4	990285.RGCCGE502_21775	1.344e-142	477.0	COG4638@1|root,COG4638@2|Bacteria,1MV2G@1224|Proteobacteria,2TT1V@28211|Alphaproteobacteria,4BCD2@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit	vanA	-	-	-	-	-	-	-	-	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_3771826_12	266779.Meso_2976	4.774e-62	222.0	COG2188@1|root,COG2188@2|Bacteria,1MVFM@1224|Proteobacteria,2U5HC@28211|Alphaproteobacteria,43R28@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	UTRA	-	-	-	-	-	-	-	-	-	-	-	-	GntR,UTRA
DYD3_k127_3771826_10	34007.IT40_03835	4.077e-65	237.0	COG3608@1|root,COG3608@2|Bacteria,1MUAA@1224|Proteobacteria,2TRVI@28211|Alphaproteobacteria,2PYKP@265|Paracoccus	28211|Alphaproteobacteria	S	Succinylglutamate desuccinylase / Aspartoacylase family	-	-	-	-	-	-	-	-	-	-	-	-	AstE_AspA
DYD3_k127_3771826_8	1353528.DT23_12315	2.361e-102	344.0	COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,2VESP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily	hisC1	-	2.6.1.9	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	M00026	R00694,R00734,R03243	RC00006,RC00888	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_3771826_3	269796.Rru_A1299	9.708e-178	569.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TR2Z@28211|Alphaproteobacteria,2JQ2N@204441|Rhodospirillales	204441|Rhodospirillales	C	FAD linked oxidases, C-terminal domain	-	-	1.1.2.4	ko:K00102	ko00620,map00620	-	R00197	RC00044	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
DYD3_k127_3771826_5	331869.BAL199_08933	9.652e-130	425.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TSIY@28211|Alphaproteobacteria,4BQ25@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	EP	COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_3771826_6	237609.PSAKL28_24020	1.872e-119	389.0	COG1173@1|root,COG1173@2|Bacteria,1MU0P@1224|Proteobacteria,1RVZU@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	ABC-type dipeptide oligopeptide nickel transport systems, permease components	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
DYD3_k127_3771826_0	290400.Jann_3819	2.119e-218	700.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQNH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_3771826_11	1336243.JAEA01000012_gene2890	8.731e-65	225.0	COG1671@1|root,COG1671@2|Bacteria,1RCZA@1224|Proteobacteria,2U997@28211|Alphaproteobacteria,1JU2W@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0178 family	MA20_27470	-	-	ko:K09768	-	-	-	-	ko00000	-	-	-	DUF188
DYD3_k127_3771826_13	864051.BurJ1DRAFT_0712	1.392e-49	189.0	COG0251@1|root,COG0251@2|Bacteria,1RH61@1224|Proteobacteria,2VSD8@28216|Betaproteobacteria,1KNZI@119065|unclassified Burkholderiales	28216|Betaproteobacteria	J	Endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_3771826_2	414684.RC1_1479	2.891e-183	589.0	COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2TSB1@28211|Alphaproteobacteria,2JQBQ@204441|Rhodospirillales	204441|Rhodospirillales	EH	Belongs to the TPP enzyme family	-	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_3771826_14	1238182.C882_3068	3.602e-44	169.0	COG1525@1|root,COG1525@2|Bacteria,1R3VA@1224|Proteobacteria,2U0NK@28211|Alphaproteobacteria,2JS0I@204441|Rhodospirillales	204441|Rhodospirillales	L	Staphylococcal nuclease homologue	-	-	-	-	-	-	-	-	-	-	-	-	SNase
DYD3_k127_3861075_0	414684.RC1_1898	1.387e-82	283.0	COG0345@1|root,COG0345@2|Bacteria,1R5J1@1224|Proteobacteria,2TTY7@28211|Alphaproteobacteria,2JPQN@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	proC	-	1.5.1.2	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	M00015	R01248,R01251,R03291,R03293	RC00054,RC00083	ko00000,ko00001,ko00002,ko01000	-	-	-	F420_oxidored,P5CR_dimer
DYD3_k127_3861075_2	570967.JMLV01000010_gene1180	1.069e-41	160.0	COG1309@1|root,COG1309@2|Bacteria,1QE3S@1224|Proteobacteria,2U3XG@28211|Alphaproteobacteria,2JTMF@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	COQ9,TetR_N
DYD3_k127_3861075_5	1430440.MGMSRv2_3932	3.043e-16	85.0	COG5490@1|root,COG5490@2|Bacteria,1MZ74@1224|Proteobacteria,2UCS0@28211|Alphaproteobacteria,2JTK7@204441|Rhodospirillales	204441|Rhodospirillales	S	Phasin protein	-	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
DYD3_k127_3861075_3	1244869.H261_07413	3.786e-35	138.0	COG5490@1|root,COG5490@2|Bacteria,1MZ74@1224|Proteobacteria,2UCS0@28211|Alphaproteobacteria,2JTK7@204441|Rhodospirillales	204441|Rhodospirillales	S	Phasin protein	-	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
DYD3_k127_3861075_1	1131814.JAFO01000001_gene543	9.501e-55	194.0	COG0073@1|root,COG0073@2|Bacteria,1RGU7@1224|Proteobacteria,2U9AH@28211|Alphaproteobacteria,3EZP0@335928|Xanthobacteraceae	28211|Alphaproteobacteria	J	Putative tRNA binding domain	csaA	GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	ko:K06878	-	-	-	-	ko00000	-	-	-	tRNA_bind
DYD3_k127_3861075_4	419610.Mext_2296	7.301e-22	96.0	COG0546@1|root,COG0546@2|Bacteria,1RDDY@1224|Proteobacteria,2U79T@28211|Alphaproteobacteria,1JS19@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	HAD-superfamily hydrolase, subfamily IA, variant 1	gph	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
DYD3_k127_3862442_1	414684.RC1_2336	0.0	1072.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRKS@28211|Alphaproteobacteria,2JPS3@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	acsA	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
DYD3_k127_3862442_5	1110502.TMO_3424	1.293e-50	193.0	COG3203@1|root,COG3203@2|Bacteria,1RJ02@1224|Proteobacteria,2U9JB@28211|Alphaproteobacteria,2JSVM@204441|Rhodospirillales	204441|Rhodospirillales	M	Gram-negative porin	-	-	-	ko:K08720	ko01501,ko05111,map01501,map05111	-	-	-	ko00000,ko00001,ko02000	1.B.1.2.1	-	-	Porin_4
DYD3_k127_3862442_2	1110502.TMO_3427	1.343e-86	295.0	28N1N@1|root,2ZB7Q@2|Bacteria,1R86T@1224|Proteobacteria,2U0A6@28211|Alphaproteobacteria,2JRMI@204441|Rhodospirillales	204441|Rhodospirillales	H	Sulfotransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_1
DYD3_k127_3862442_3	1110502.TMO_3424	1.63e-56	211.0	COG3203@1|root,COG3203@2|Bacteria,1RJ02@1224|Proteobacteria,2U9JB@28211|Alphaproteobacteria,2JSVM@204441|Rhodospirillales	204441|Rhodospirillales	M	Gram-negative porin	-	-	-	ko:K08720	ko01501,ko05111,map01501,map05111	-	-	-	ko00000,ko00001,ko02000	1.B.1.2.1	-	-	Porin_4
DYD3_k127_3862442_4	402881.Plav_1281	3.701e-51	186.0	2C2J5@1|root,315UG@2|Bacteria,1RHAH@1224|Proteobacteria,2U94W@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF3576)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3576
DYD3_k127_3862442_6	452662.SJA_C1-32230	2.135e-30	124.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,2K5GA@204457|Sphingomonadales	204457|Sphingomonadales	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
DYD3_k127_3862442_0	1121033.AUCF01000003_gene3386	0.0	1206.0	COG0495@1|root,COG0495@2|Bacteria,1MV47@1224|Proteobacteria,2TQPK@28211|Alphaproteobacteria,2JQAA@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the class-I aminoacyl-tRNA synthetase family	leuS	-	6.1.1.4	ko:K01869	ko00970,map00970	M00359,M00360	R03657	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Anticodon_1,tRNA-synt_1,tRNA-synt_1_2
DYD3_k127_3862442_7	414684.RC1_2552	7.676e-23	104.0	COG5468@1|root,COG5468@2|Bacteria,1MXDR@1224|Proteobacteria,2UB6D@28211|Alphaproteobacteria,2JU32@204441|Rhodospirillales	204441|Rhodospirillales	S	Lipopolysaccharide-assembly	-	-	-	ko:K03643	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	LptE
DYD3_k127_3862442_8	1238182.C882_3252	8.038e-08	57.0	COG1466@1|root,COG1466@2|Bacteria,1R8PA@1224|Proteobacteria,2U1KQ@28211|Alphaproteobacteria,2JQE9@204441|Rhodospirillales	204441|Rhodospirillales	L	DNA polymerase III, delta subunit	holA	-	2.7.7.7	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta
DYD3_k127_3862778_0	1122604.JONR01000015_gene197	0.0	1107.0	COG1028@1|root,COG2030@1|root,COG1028@2|Bacteria,COG2030@2|Bacteria,1MXNQ@1224|Proteobacteria,1RRVQ@1236|Gammaproteobacteria,1X4R1@135614|Xanthomonadales	135614|Xanthomonadales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_3862778_1	1177181.T9A_02383	1.809e-166	544.0	COG0183@1|root,COG0183@2|Bacteria,1MU8C@1224|Proteobacteria,1RNDU@1236|Gammaproteobacteria,1XMS6@135619|Oceanospirillales	135619|Oceanospirillales	I	Belongs to the thiolase family	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_3864630_2	1380394.JADL01000021_gene1856	1.907e-88	293.0	COG0216@1|root,COG0216@2|Bacteria,1MV28@1224|Proteobacteria,2TQSV@28211|Alphaproteobacteria,2JQII@204441|Rhodospirillales	204441|Rhodospirillales	J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA	prfA	-	-	ko:K02835	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD3_k127_3864630_3	1150626.PHAMO_210327	8.119e-76	265.0	COG2890@1|root,COG2890@2|Bacteria,1MXCQ@1224|Proteobacteria,2TZFK@28211|Alphaproteobacteria,2JQMD@204441|Rhodospirillales	204441|Rhodospirillales	J	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif	prmC	-	2.1.1.297	ko:K02493	-	-	R10806	RC00003,RC03279	ko00000,ko01000,ko03012	-	-	-	MTS,Methyltransf_25,Methyltransf_31
DYD3_k127_3864630_6	1041138.KB890254_gene4366	3.926e-23	110.0	COG5373@1|root,COG5373@2|Bacteria,1N7JV@1224|Proteobacteria,2TR7A@28211|Alphaproteobacteria,4B9YF@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Domain of unknown function (DUF4167)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4167
DYD3_k127_3864630_0	1205680.CAKO01000002_gene2421	0.0	1292.0	COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,2TRKI@28211|Alphaproteobacteria,2JPGH@204441|Rhodospirillales	204441|Rhodospirillales	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD3_k127_3864630_4	316055.RPE_2381	3.517e-45	170.0	COG1309@1|root,COG1309@2|Bacteria,1N1Q3@1224|Proteobacteria,2TVF4@28211|Alphaproteobacteria,3JQVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_N
DYD3_k127_3864630_1	1150469.RSPPHO_01509	1.538e-117	396.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2TT3Z@28211|Alphaproteobacteria,2JPMC@204441|Rhodospirillales	204441|Rhodospirillales	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_3864630_7	1408427.JADB01000006_gene134	8.557e-16	78.0	2DTS4@1|root,33MFD@2|Bacteria,1PTGB@1224|Proteobacteria,2V5BU@28211|Alphaproteobacteria,48UEV@772|Bartonellaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3864630_5	1382230.ASAP_2763	1.351e-25	106.0	2DPM9@1|root,332MQ@2|Bacteria,1NAPW@1224|Proteobacteria,2UWJH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_387412_4	1380391.JIAS01000015_gene12	3.96e-37	155.0	COG1256@1|root,COG1256@2|Bacteria,1MV2M@1224|Proteobacteria,2TV1B@28211|Alphaproteobacteria,2JRC7@204441|Rhodospirillales	204441|Rhodospirillales	N	Belongs to the flagella basal body rod proteins family	-	-	-	-	-	-	-	-	-	-	-	-	Flg_bbr_C
DYD3_k127_387412_6	1380391.JIAS01000015_gene11	3.092e-07	62.0	COG1749@1|root,COG1749@2|Bacteria	2|Bacteria	N	bacterial-type flagellum-dependent cell motility	flgK	-	-	ko:K02388,ko:K02396	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Big_5,DUF4082,Flg_bb_rod,Flg_bbr_C,He_PIG,Mo-co_dimer
DYD3_k127_387412_2	1430440.MGMSRv2_4213	3.615e-79	274.0	COG1344@1|root,COG1344@2|Bacteria,1MXC4@1224|Proteobacteria,2TRIP@28211|Alphaproteobacteria,2JSK0@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	-	-	-	ko:K02406	ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
DYD3_k127_387412_0	682795.AciX8_1508	8.169e-103	346.0	COG2089@1|root,COG2089@2|Bacteria,3Y39R@57723|Acidobacteria	57723|Acidobacteria	M	PFAM N-acetylneuraminic acid synthase, N-terminal	-	-	-	-	-	-	-	-	-	-	-	-	NeuB
DYD3_k127_387412_5	205922.Pfl01_4045	6.587e-28	130.0	COG0110@1|root,COG0110@2|Bacteria,1MXF9@1224|Proteobacteria,1RSPB@1236|Gammaproteobacteria,1YR31@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	S	Bacterial transferase hexapeptide (six repeats)	-	-	-	-	-	-	-	-	-	-	-	-	Hexapep,Hexapep_2
DYD3_k127_387412_1	641491.DND132_0782	3.941e-101	340.0	COG0517@1|root,COG1208@1|root,COG0517@2|Bacteria,COG1208@2|Bacteria,1MUYJ@1224|Proteobacteria,42MX5@68525|delta/epsilon subdivisions,2X5IA@28221|Deltaproteobacteria,2MGRF@213115|Desulfovibrionales	28221|Deltaproteobacteria	M	Nucleotidyl transferase	-	-	-	-	-	-	-	-	-	-	-	-	CBS,NTP_transferase
DYD3_k127_387412_3	762376.AXYL_02922	2.224e-49	182.0	COG2930@1|root,COG2930@2|Bacteria,1RAIB@1224|Proteobacteria,2VT65@28216|Betaproteobacteria,3T7BK@506|Alcaligenaceae	28216|Betaproteobacteria	S	Las17-binding protein actin regulator	-	-	-	-	-	-	-	-	-	-	-	-	Ysc84
DYD3_k127_387789_0	107636.JQNK01000009_gene3602	0.0	1541.0	COG2304@1|root,COG2931@1|root,COG2304@2|Bacteria,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,36ZVS@31993|Methylocystaceae	28211|Alphaproteobacteria	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	FG-GAP,HemolysinCabind,Integrin_beta
DYD3_k127_387789_7	715226.ABI_45490	6.452e-67	234.0	COG0745@1|root,COG0745@2|Bacteria,1N7TJ@1224|Proteobacteria,2TUNQ@28211|Alphaproteobacteria,2KK17@204458|Caulobacterales	204458|Caulobacterales	K	Transcriptional regulatory protein, C terminal	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_387789_6	1282360.ABAC460_18870	6.907e-69	254.0	COG5002@1|root,COG5002@2|Bacteria,1QTSA@1224|Proteobacteria,2TXSP@28211|Alphaproteobacteria,2KHBS@204458|Caulobacterales	204458|Caulobacterales	T	Two-component sensor kinase N-terminal	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
DYD3_k127_387789_5	1007104.SUS17_886	1.325e-112	381.0	COG1946@1|root,COG1946@2|Bacteria,1MV9R@1224|Proteobacteria,2TRFD@28211|Alphaproteobacteria,2K289@204457|Sphingomonadales	204457|Sphingomonadales	I	Acyl-CoA thioesterase	-	-	-	ko:K10805	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	4HBT_3
DYD3_k127_387789_4	1112214.AHIS01000101_gene1669	2.663e-164	524.0	COG1960@1|root,COG1960@2|Bacteria,1MUBH@1224|Proteobacteria,2TVBB@28211|Alphaproteobacteria,2K1G8@204457|Sphingomonadales	204457|Sphingomonadales	I	Acyl-CoA dehydrogenase, N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_387789_2	1123269.NX02_19120	3.956e-218	680.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TUVB@28211|Alphaproteobacteria,2K0FU@204457|Sphingomonadales	204457|Sphingomonadales	I	Acyl-CoA dehydrogenase, middle domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_387789_1	551789.ATVJ01000002_gene2667	2.601e-315	983.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TS8E@28211|Alphaproteobacteria,43WP0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	-	-	1.1.1.35	ko:K07516	ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212	M00087	R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
DYD3_k127_387789_3	629773.AORY01000011_gene1874	7.923e-197	622.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2JZZB@204457|Sphingomonadales	204457|Sphingomonadales	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_3908821_9	639283.Snov_3024	2.354e-11	65.0	COG2086@1|root,COG2086@2|Bacteria,1N8JA@1224|Proteobacteria,2U7N4@28211|Alphaproteobacteria,3EZDR@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Electron transfer flavoprotein domain	-	-	-	ko:K03521	-	-	-	-	ko00000	-	-	-	ETF
DYD3_k127_3908821_7	395492.Rleg2_2649	2.856e-32	127.0	2DHNW@1|root,300EY@2|Bacteria,1PQSD@1224|Proteobacteria,2V34D@28211|Alphaproteobacteria,4BK4N@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Antitoxin Phd_YefM, type II toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_3908821_6	991905.SL003B_0287	3.136e-62	216.0	2CIAS@1|root,32S7M@2|Bacteria,1N2VP@1224|Proteobacteria,2UC6K@28211|Alphaproteobacteria,4BSPJ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PemK_toxin
DYD3_k127_3908821_2	1090320.KB900605_gene2345	1.07e-200	634.0	COG0112@1|root,COG0112@2|Bacteria,1MUIS@1224|Proteobacteria,2TQKT@28211|Alphaproteobacteria,2K8T8@204457|Sphingomonadales	204457|Sphingomonadales	E	Serine hydroxymethyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	SHMT
DYD3_k127_3908821_4	1122135.KB893139_gene1337	1.699e-138	453.0	COG4175@1|root,COG4175@2|Bacteria,1MU86@1224|Proteobacteria,2TS8Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG4175 ABC-type proline glycine betaine transport system ATPase component	proV	GO:0000166,GO:0003674,GO:0004888,GO:0005034,GO:0005215,GO:0005275,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0009628,GO:0009987,GO:0015695,GO:0015696,GO:0015697,GO:0015837,GO:0015838,GO:0016020,GO:0016021,GO:0017076,GO:0022857,GO:0023052,GO:0030554,GO:0031224,GO:0031460,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0038023,GO:0043167,GO:0043168,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0060089,GO:0065007,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904949,GO:1990351	3.6.3.32	ko:K02000	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.12	-	-	ABC_tran
DYD3_k127_3908821_5	391165.GbCGDNIH1_0085	1.331e-112	370.0	COG4176@1|root,COG4176@2|Bacteria,1QTTE@1224|Proteobacteria,2TS3U@28211|Alphaproteobacteria,2JPG7@204441|Rhodospirillales	204441|Rhodospirillales	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02001	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1
DYD3_k127_3908821_3	639283.Snov_3031	1.15e-148	475.0	COG2113@1|root,COG2113@2|Bacteria,1MVIG@1224|Proteobacteria,2TRV8@28211|Alphaproteobacteria,3EYT3@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Substrate binding domain of ABC-type glycine betaine transport system	-	-	-	ko:K02002	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	OpuAC
DYD3_k127_3908821_1	1121033.AUCF01000001_gene2221	2.749e-224	714.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,2JPZI@204441|Rhodospirillales	204441|Rhodospirillales	C	belongs to the aldehyde dehydrogenase family	betB	-	1.2.1.8	ko:K00130	ko00260,ko01100,map00260,map01100	M00555	R02565,R02566	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_3908821_0	1125973.JNLC01000013_gene3900	3.676e-290	900.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JWT5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	betA	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_3908821_8	314345.SPV1_01592	1.842e-27	122.0	2B64P@1|root,31Z1K@2|Bacteria,1RGUR@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3908821_10	412597.AEPN01000041_gene110	3.359e-05	47.0	COG3545@1|root,COG3545@2|Bacteria,1MZB5@1224|Proteobacteria,2UC18@28211|Alphaproteobacteria,2PWYX@265|Paracoccus	28211|Alphaproteobacteria	S	Serine hydrolase	-	-	-	ko:K07002	-	-	-	-	ko00000	-	-	-	Ser_hydrolase
DYD3_k127_3910534_1	91604.ID47_04100	5.877e-254	790.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TS7G@28211|Alphaproteobacteria,47EU8@766|Rickettsiales	766|Rickettsiales	S	COG0488 ATPase components of ABC transporters with duplicated ATPase domains	abcT1	-	-	ko:K15738	-	-	-	-	ko00000,ko02000	3.A.1.120.6	-	-	ABC_tran,ABC_tran_Xtn
DYD3_k127_3910534_2	414684.RC1_0857	4.137e-69	246.0	COG1346@1|root,COG1346@2|Bacteria,1MV81@1224|Proteobacteria,2TSP3@28211|Alphaproteobacteria,2JRSB@204441|Rhodospirillales	204441|Rhodospirillales	M	effector of murein hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	LrgB
DYD3_k127_3910534_3	1178482.BJB45_15985	1.808e-21	98.0	COG1380@1|root,COG1380@2|Bacteria,1N753@1224|Proteobacteria,1SDBW@1236|Gammaproteobacteria,1XM48@135619|Oceanospirillales	135619|Oceanospirillales	S	LrgA family	-	-	-	-	-	-	-	-	-	-	-	-	LrgA
DYD3_k127_3910534_0	1207063.P24_17977	0.0	1203.0	COG0653@1|root,COG0653@2|Bacteria,1MUJZ@1224|Proteobacteria,2TTBF@28211|Alphaproteobacteria,2JR68@204441|Rhodospirillales	204441|Rhodospirillales	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	secA	-	-	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4	-	-	Helicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW
DYD3_k127_3919186_1	1123288.SOV_4c03660	1.437e-173	577.0	COG1404@1|root,COG2931@1|root,COG4935@1|root,COG1404@2|Bacteria,COG2931@2|Bacteria,COG4935@2|Bacteria,1U2V0@1239|Firmicutes,4H5TB@909932|Negativicutes	909932|Negativicutes	OQ	Haemolysin-type calcium binding protein related domain	-	-	-	-	-	-	-	-	-	-	-	-	HCBP_related,HemolysinCabind
DYD3_k127_3919186_7	1211777.BN77_1006	2.59e-12	71.0	COG0582@1|root,COG0582@2|Bacteria,1MU23@1224|Proteobacteria,2TS2G@28211|Alphaproteobacteria,4BB1A@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Arm-DNA-bind_3,Phage_integrase
DYD3_k127_3919186_2	371042.NG99_23425	1.312e-115	383.0	COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,1RQ2N@1236|Gammaproteobacteria,3X7JV@551|Erwinia	1236|Gammaproteobacteria	E	Belongs to the AB hydrolase superfamily. MetX family	-	-	2.3.1.31	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	-	R01776	RC00004,RC00041	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_3919186_6	592316.Pat9b_1575	2.443e-65	230.0	COG1309@1|root,COG1309@2|Bacteria,1QEK4@1224|Proteobacteria,1S1ZD@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_3919186_5	1229485.AMYV01000007_gene1045	8.018e-79	276.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,1RS3G@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	1.1.1.100,1.1.1.304,1.1.1.76	ko:K00059,ko:K03366	ko00061,ko00333,ko00650,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00650,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R02855,R02946,R03707,R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R09078,R10116,R10120,R10505,R11671	RC00029,RC00117,RC00205,RC00525	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_3919186_0	1229485.AMYV01000007_gene1044	6.674e-184	593.0	COG1053@1|root,COG1053@2|Bacteria,1MURY@1224|Proteobacteria,1RNYN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	Succinate dehydrogenase fumarate reductase, flavoprotein subunit	-	-	1.3.99.4	ko:K05898	ko00984,ko01100,ko01120,map00984,map01100,map01120	-	R09884	RC00991	ko00000,ko00001,ko01000	-	-	-	FAD_binding_2
DYD3_k127_3919186_4	371042.NG99_14460	5.062e-81	281.0	COG5285@1|root,COG5285@2|Bacteria,1PF68@1224|Proteobacteria,1RYF8@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	Phytanoyl-CoA dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_3919186_3	371042.NG99_23475	9.095e-97	325.0	COG0834@1|root,COG0834@2|Bacteria,1NFPY@1224|Proteobacteria,1SJUC@1236|Gammaproteobacteria,3X7BE@551|Erwinia	1236|Gammaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_3934422_0	1297570.MESS4_100037	3.746e-249	775.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,43HBA@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Belongs to the aldehyde dehydrogenase family	prr	-	1.2.1.19	ko:K00137	ko00330,ko00410,ko01100,map00330,map00410,map01100	-	R02549	RC00080	ko00000,ko00001,ko01000	-	-	-	Aldedh
DYD3_k127_3934422_2	1123399.AQVE01000007_gene1202	6.861e-124	401.0	COG1177@1|root,COG1177@2|Bacteria,1MVC5@1224|Proteobacteria,1RQB7@1236|Gammaproteobacteria,460H7@72273|Thiotrichales	1236|Gammaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02053,ko:K11070	ko02010,ko02024,map02010,map02024	M00193,M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11,3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_3934422_1	1082933.MEA186_23641	7.556e-142	456.0	COG1176@1|root,COG1176@2|Bacteria,1NU6V@1224|Proteobacteria,2TU7Q@28211|Alphaproteobacteria,43ITE@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	ABC-type spermidine putrescine transport system, permease component I	ydcU	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K02054	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
DYD3_k127_3939139_0	402881.Plav_3049	0.0	1011.0	COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,2TSPQ@28211|Alphaproteobacteria,1JMZC@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrA	-	5.99.1.3	ko:K02469	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
DYD3_k127_3939139_3	1247963.JPHU01000006_gene190	2.579e-51	191.0	COG0669@1|root,COG0669@2|Bacteria,1RD9F@1224|Proteobacteria,2U74H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate	coaD	-	2.7.7.3	ko:K00954	ko00770,ko01100,map00770,map01100	M00120	R03035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
DYD3_k127_3939139_2	1122135.KB893169_gene2569	3.845e-72	248.0	COG0652@1|root,COG0652@2|Bacteria,1R9ZQ@1224|Proteobacteria,2U591@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	-	-	5.2.1.8	ko:K01802,ko:K09565	ko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145	-	-	-	ko00000,ko00001,ko01000,ko03110	-	-	-	Pro_isomerase
DYD3_k127_3939139_4	1150469.RSPPHO_00763	2.573e-09	64.0	COG0664@1|root,COG0664@2|Bacteria,1RII7@1224|Proteobacteria,2UA8E@28211|Alphaproteobacteria,2JTAA@204441|Rhodospirillales	204441|Rhodospirillales	T	Cyclic nucleotide-monophosphate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	cNMP_binding
DYD3_k127_3939139_1	861208.AGROH133_06554	1.669e-166	538.0	COG0343@1|root,COG0343@2|Bacteria,1MUCA@1224|Proteobacteria,2TR87@28211|Alphaproteobacteria,4B9T8@82115|Rhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)	tgt	-	2.4.2.29	ko:K00773	-	-	R03789,R10209	RC00063	ko00000,ko01000,ko03016	-	-	-	TGT
DYD3_k127_3945706_2	1235457.C404_27905	8.93e-22	97.0	COG1028@1|root,COG1028@2|Bacteria,1PGYV@1224|Proteobacteria,2VJ5D@28216|Betaproteobacteria,1K4AJ@119060|Burkholderiaceae	28216|Betaproteobacteria	IQ	KR domain	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_3945706_0	1027273.GZ77_09895	3.394e-178	574.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,1RPZ9@1236|Gammaproteobacteria,1XP3G@135619|Oceanospirillales	135619|Oceanospirillales	I	acyl-CoA dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_3945706_1	1027273.GZ77_09900	1.368e-93	319.0	COG1960@1|root,COG1960@2|Bacteria,1N05C@1224|Proteobacteria,1RYCC@1236|Gammaproteobacteria,1XRGZ@135619|Oceanospirillales	135619|Oceanospirillales	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_N
DYD3_k127_3952832_2	1353531.AZNX01000001_gene1831	5.132e-61	213.0	COG0600@1|root,COG0600@2|Bacteria,1MU6Q@1224|Proteobacteria,2TQT6@28211|Alphaproteobacteria,4B7TN@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	ABC-type nitrate sulfonate bicarbonate transport system, permease component	nrtB	-	-	ko:K02050,ko:K15577	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.16.2,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_3952832_1	1283300.ATXB01000002_gene2683	4.754e-114	380.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,1RNEH@1236|Gammaproteobacteria,1XEX0@135618|Methylococcales	135618|Methylococcales	P	TIGRFAM Nitrate transport ATP-binding	-	-	-	ko:K15578	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.16.1	-	-	ABC_tran
DYD3_k127_3952832_0	420324.KI911970_gene1635	0.0	1309.0	COG1251@1|root,COG1251@2|Bacteria,1MW58@1224|Proteobacteria,2TS8I@28211|Alphaproteobacteria,1JSQY@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase	nirB	-	1.7.1.15	ko:K00362	ko00910,ko01120,map00910,map01120	M00530	R00787	RC00176	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,NIR_SIR,NIR_SIR_ferr,Pyr_redox_2,Rieske_2
DYD3_k127_3952832_3	509190.Cseg_2057	3.191e-37	156.0	COG2146@1|root,COG2146@2|Bacteria,1N03R@1224|Proteobacteria,2UC33@28211|Alphaproteobacteria,2KGXC@204458|Caulobacterales	204458|Caulobacterales	P	Nitrite reductase NAD(P)H , small subunit	-	-	1.7.1.15	ko:K00363	ko00910,ko01120,map00910,map01120	M00530	R00787	RC00176	ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske
DYD3_k127_3953620_3	1205680.CAKO01000030_gene4921	1.522e-10	69.0	COG1570@1|root,COG1570@2|Bacteria,1QW7S@1224|Proteobacteria,2VC9I@28211|Alphaproteobacteria,2JY8E@204441|Rhodospirillales	204441|Rhodospirillales	L	LTXXQ motif family protein	-	-	-	-	-	-	-	-	-	-	-	-	LTXXQ
DYD3_k127_3953620_2	706587.Desti_2068	2.067e-22	100.0	COG2261@1|root,COG2261@2|Bacteria	2|Bacteria	S	Transglycosylase associated protein	-	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
DYD3_k127_3953620_1	402881.Plav_2068	2.278e-56	202.0	COG0242@1|root,COG0242@2|Bacteria,1R9XK@1224|Proteobacteria,2U7NP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	-	-	3.5.1.88	ko:K01462	-	-	-	-	ko00000,ko01000	-	-	-	Pep_deformylase
DYD3_k127_3953620_0	1282876.BAOK01000001_gene1028	5.544e-59	211.0	COG5590@1|root,COG5590@2|Bacteria,1MW25@1224|Proteobacteria,2U9ST@28211|Alphaproteobacteria,4BQQR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	COQ9	cOQ9	-	-	ko:K18587	-	-	-	-	ko00000	-	-	-	COQ9
DYD3_k127_3985210_3	1288298.rosmuc_03768	1.214e-14	74.0	COG1573@1|root,COG1573@2|Bacteria,1MWX1@1224|Proteobacteria,2TT4Q@28211|Alphaproteobacteria,46P6Y@74030|Roseovarius	28211|Alphaproteobacteria	L	COG1573 Uracil-DNA glycosylase	udgA	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_3985210_1	1242864.D187_004499	6.869e-57	212.0	COG1893@1|root,COG1893@2|Bacteria,1NYA7@1224|Proteobacteria,43DYG@68525|delta/epsilon subdivisions,2X91X@28221|Deltaproteobacteria,2Z1HB@29|Myxococcales	28221|Deltaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	-	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA
DYD3_k127_3985210_0	1380355.JNIJ01000005_gene2646	1.959e-72	248.0	COG3832@1|root,COG3832@2|Bacteria,1RDMX@1224|Proteobacteria,2TSWJ@28211|Alphaproteobacteria,3JX1W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_3985210_2	450851.PHZ_c3154	3.879e-49	177.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2TSNH@28211|Alphaproteobacteria,2KI15@204458|Caulobacterales	204458|Caulobacterales	K	Belongs to the sigma-70 factor family	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_3994376_0	331869.BAL199_01959	6.805e-98	352.0	COG2909@1|root,COG2909@2|Bacteria,1QY87@1224|Proteobacteria,2TXJQ@28211|Alphaproteobacteria,4BTE1@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	trisaccharide binding	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3994376_1	1316936.K678_07497	5.749e-38	150.0	COG3143@1|root,COG3143@2|Bacteria,1MW23@1224|Proteobacteria,2TTS0@28211|Alphaproteobacteria,2JSNW@204441|Rhodospirillales	204441|Rhodospirillales	NT	COG3143 Chemotaxis protein	-	-	-	ko:K03414	ko02030,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheZ
DYD3_k127_3994376_2	1380391.JIAS01000017_gene523	2.54e-30	130.0	COG3334@1|root,COG3334@2|Bacteria,1RKF6@1224|Proteobacteria,2TRR1@28211|Alphaproteobacteria,2JSTD@204441|Rhodospirillales	204441|Rhodospirillales	S	PFAM MgtE intracellular	-	-	-	-	-	-	-	-	-	-	-	-	MgtE_N
DYD3_k127_3994376_4	1121033.AUCF01000013_gene1697	1.828e-10	69.0	2CHDB@1|root,32S5T@2|Bacteria,1N0D8@1224|Proteobacteria,2UCVM@28211|Alphaproteobacteria,2JTID@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_3994376_3	1282876.BAOK01000001_gene1534	5.476e-25	106.0	COG1868@1|root,COG1868@2|Bacteria,1MX01@1224|Proteobacteria,2TR4F@28211|Alphaproteobacteria,4BPME@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliM	-	-	ko:K02416	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliM,FliMN_C
DYD3_k127_3998481_0	402881.Plav_1712	4.252e-237	746.0	COG4547@1|root,COG4547@2|Bacteria,1MX11@1224|Proteobacteria,2TS4N@28211|Alphaproteobacteria,1JNBB@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	Cobalamin biosynthesis protein CobT VWA domain	cobT	-	6.6.1.2	ko:K09883	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobT,CobT_C
DYD3_k127_3998481_2	402881.Plav_1708	1.348e-46	181.0	COG4246@1|root,COG4246@2|Bacteria,1N7Y1@1224|Proteobacteria,2TTZW@28211|Alphaproteobacteria,1JP9X@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Esterase-like activity of phytase	-	-	-	-	-	-	-	-	-	-	-	-	Phytase-like
DYD3_k127_3998481_1	1122962.AULH01000010_gene1240	1.391e-57	204.0	COG1738@1|root,COG1738@2|Bacteria,1MVQU@1224|Proteobacteria,2TRYN@28211|Alphaproteobacteria,3704W@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Putative vitamin uptake transporter	yhhQ	GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016020,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046116,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072531,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1990397	-	ko:K09125	-	-	-	-	ko00000	-	-	-	Vut_1
DYD3_k127_4003149_1	402881.Plav_2895	3.387e-119	397.0	COG0019@1|root,COG0019@2|Bacteria,1MZ7Y@1224|Proteobacteria,2TSKB@28211|Alphaproteobacteria,1JN0I@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	ldc	-	4.1.1.17	ko:K01581	ko00330,ko00480,ko01100,ko01110,ko01130,map00330,map00480,map01100,map01110,map01130	M00134	R00670	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Orn_Arg_deC_N,Orn_DAP_Arg_deC
DYD3_k127_4003149_4	426114.THI_3115	1.272e-69	250.0	COG1028@1|root,COG1028@2|Bacteria,1P9R4@1224|Proteobacteria,2VUQP@28216|Betaproteobacteria,1KNZ4@119065|unclassified Burkholderiales	28216|Betaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_4003149_3	395961.Cyan7425_1773	4.302e-78	277.0	COG3793@1|root,COG3793@2|Bacteria,1GHE9@1117|Cyanobacteria	1117|Cyanobacteria	P	PFAM Mo-dependent nitrogenase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4003149_0	582402.Hbal_0068	8.947e-153	494.0	COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2TQN9@28211|Alphaproteobacteria,43WT1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Threonine dehydratase	ilvA	-	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,ACT_4,PALP
DYD3_k127_4003149_6	195105.CN97_08355	3.845e-27	112.0	COG3609@1|root,COG3609@2|Bacteria,1N9C5@1224|Proteobacteria,2UG3D@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_4003149_5	1410620.SHLA_81c000320	1.201e-35	141.0	COG3668@1|root,COG3668@2|Bacteria,1N7U3@1224|Proteobacteria,2UH40@28211|Alphaproteobacteria,4BFRF@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_4003149_7	1380391.JIAS01000003_gene1752	1.964e-13	74.0	2EHG6@1|root,33B82@2|Bacteria,1RJAB@1224|Proteobacteria,2U93D@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF5076)	MA20_41735	-	-	-	-	-	-	-	-	-	-	-	DUF5076
DYD3_k127_4003149_2	365044.Pnap_2220	2.414e-107	354.0	COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,2VHMU@28216|Betaproteobacteria,4ABA8@80864|Comamonadaceae	28216|Betaproteobacteria	O	PFAM heat shock protein DnaJ domain protein	cbpA	-	-	ko:K05516	-	-	-	-	ko00000,ko03036,ko03110	-	-	-	DnaJ,DnaJ_C
DYD3_k127_4013795_1	1245469.S58_29900	2.923e-135	438.0	COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,2TRVJ@28211|Alphaproteobacteria,3JQUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transport of potassium into the cell	kup	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662	-	ko:K03549	-	-	-	-	ko00000,ko02000	2.A.72	-	-	K_trans
DYD3_k127_4013795_2	414684.RC1_0262	1.286e-81	278.0	COG0566@1|root,COG0566@2|Bacteria,1Q4QS@1224|Proteobacteria,2VB5X@28211|Alphaproteobacteria,2JW00@204441|Rhodospirillales	204441|Rhodospirillales	J	SpoU rRNA Methylase family	-	-	-	ko:K03437	-	-	-	-	ko00000,ko03016	-	-	-	SpoU_methylase
DYD3_k127_4013795_4	391165.GbCGDNIH1_1395	4.458e-09	65.0	COG4322@1|root,COG4322@2|Bacteria,1ND4T@1224|Proteobacteria,2VFG5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2272)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2272
DYD3_k127_4013795_0	856793.MICA_317	3.395e-163	523.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2TRIQ@28211|Alphaproteobacteria,4BPVX@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	DegT/DnrJ/EryC1/StrS aminotransferase family	MA20_07980	-	-	-	-	-	-	-	-	-	-	-	DegT_DnrJ_EryC1
DYD3_k127_4013795_3	765698.Mesci_2880	7.304e-69	240.0	COG1079@1|root,COG1079@2|Bacteria,1MVDQ@1224|Proteobacteria,2TSGJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
DYD3_k127_402448_5	1131813.AQVT01000001_gene2605	1.643e-81	284.0	COG3562@1|root,COG3562@2|Bacteria,1MUZT@1224|Proteobacteria,2TQM3@28211|Alphaproteobacteria,1JR6H@119045|Methylobacteriaceae	28211|Alphaproteobacteria	M	PFAM Capsule polysaccharide biosynthesis protein	rkpJ	-	-	ko:K07265	-	-	-	-	ko00000	-	-	-	Capsule_synth
DYD3_k127_402448_1	1123269.NX02_08815	7.884e-124	407.0	COG4102@1|root,COG4102@2|Bacteria,1MX4R@1224|Proteobacteria,2TSFB@28211|Alphaproteobacteria,2K29T@204457|Sphingomonadales	204457|Sphingomonadales	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF1501
DYD3_k127_402448_2	760117.JN27_15880	4.58e-122	426.0	COG5267@1|root,COG5267@2|Bacteria,1MWJK@1224|Proteobacteria,2VJ7P@28216|Betaproteobacteria,4760X@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Protein of unknown function (DUF1800)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1800
DYD3_k127_402448_6	666684.AfiDRAFT_0158	4.768e-62	242.0	COG0662@1|root,COG0836@1|root,COG0662@2|Bacteria,COG0836@2|Bacteria,1MV39@1224|Proteobacteria,2TT0R@28211|Alphaproteobacteria,3JS2Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	Belongs to the mannose-6-phosphate isomerase type 2 family	manC	-	2.7.7.13,5.3.1.8	ko:K00971,ko:K16011	ko00051,ko00520,ko01100,ko01110,ko01130,ko02025,map00051,map00520,map01100,map01110,map01130,map02025	M00114,M00361,M00362	R00885,R01819	RC00002,RC00376	ko00000,ko00001,ko00002,ko01000	-	-	-	MannoseP_isomer,NTP_transferase
DYD3_k127_402448_0	1054213.HMPREF9946_04542	5.749e-126	424.0	COG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,2UE73@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Polysaccharide biosynthesis/export protein	-	-	-	-	-	-	-	-	-	-	-	-	Caps_synth_GfcC,Poly_export,SLBB
DYD3_k127_402448_8	1408428.JNJP01000089_gene1227	2.942e-31	132.0	COG0363@1|root,COG0363@2|Bacteria,1R5K6@1224|Proteobacteria,42UV6@68525|delta/epsilon subdivisions,2WP1R@28221|Deltaproteobacteria,2MAEX@213115|Desulfovibrionales	28221|Deltaproteobacteria	G	TIGRFAM 6-phosphogluconolactonase	pgl	-	3.1.1.31	ko:K01057	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R02035	RC00537	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucosamine_iso
DYD3_k127_402448_3	1121479.AUBS01000031_gene123	1.452e-94	327.0	COG0111@1|root,COG0111@2|Bacteria,1R85R@1224|Proteobacteria,2U8Q7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EH	COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases	-	-	-	-	-	-	-	-	-	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_402448_4	1217720.ALOX01000011_gene2525	5.415e-92	307.0	COG1083@1|root,COG1083@2|Bacteria,1QACI@1224|Proteobacteria,2U5PV@28211|Alphaproteobacteria,2JU2N@204441|Rhodospirillales	204441|Rhodospirillales	M	Cytidylyltransferase	-	-	2.7.7.43	ko:K00983	ko00520,ko01100,map00520,map01100	-	R01117,R04215	RC00152	ko00000,ko00001,ko01000	-	-	-	CTP_transf_3
DYD3_k127_402448_7	1121479.AUBS01000031_gene121	2.231e-35	145.0	COG0483@1|root,COG0483@2|Bacteria,1NFR1@1224|Proteobacteria,2U5RM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Belongs to the inositol monophosphatase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Inositol_P
DYD3_k127_402448_9	1121106.JQKB01000010_gene443	9.336e-11	72.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TSWB@28211|Alphaproteobacteria,2JYQE@204441|Rhodospirillales	204441|Rhodospirillales	Q	2-keto-4-pentenoate hydratase	-	-	4.2.1.80	ko:K02554	ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R02601,R04781	RC00750,RC01213	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_4049125_1	450851.PHZ_c0572	3.268e-191	606.0	COG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,2TSQH@28211|Alphaproteobacteria,2KFQ2@204458|Caulobacterales	204458|Caulobacterales	F	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides	-	-	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1
DYD3_k127_4049125_2	272568.GDI3264	8.281e-98	331.0	COG0438@1|root,COG0438@2|Bacteria,1MVKK@1224|Proteobacteria	1224|Proteobacteria	M	Glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
DYD3_k127_4049125_0	402881.Plav_0799	4.27e-256	799.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,1JN19@119043|Rhodobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	alkK	-	6.2.1.44,6.2.1.48	ko:K00666,ko:K02182,ko:K20034	ko00920,map00920	-	R10820	RC00004,RC00014	ko00000,ko00001,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4049125_5	1073999.BN137_2783	2.169e-11	72.0	COG0454@1|root,COG0456@2|Bacteria,1RIF2@1224|Proteobacteria,1S7KH@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	N-acetyltransferase	yjaB_1	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_7
DYD3_k127_4049125_3	1525715.IX54_15515	9.059e-71	245.0	COG2818@1|root,COG2818@2|Bacteria,1R9X5@1224|Proteobacteria,2TUP5@28211|Alphaproteobacteria,2PUDX@265|Paracoccus	28211|Alphaproteobacteria	L	Methyladenine glycosylase	tag	-	3.2.2.20	ko:K01246	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Adenine_glyco
DYD3_k127_4049125_4	1380394.JADL01000001_gene2849	1.044e-68	241.0	COG0354@1|root,COG0354@2|Bacteria,1N852@1224|Proteobacteria,2TR8J@28211|Alphaproteobacteria,2JR8Z@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the GcvT family	-	-	-	ko:K06980	-	-	-	-	ko00000,ko03016	-	-	-	GCV_T,GCV_T_C
DYD3_k127_4052955_0	1333998.M2A_1545	8.857e-172	546.0	COG2189@1|root,COG2189@2|Bacteria,1MX9M@1224|Proteobacteria,2TSW9@28211|Alphaproteobacteria,4BPGB@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	Belongs to the N(4) N(6)-methyltransferase family	ccrM	-	2.1.1.72	ko:K13581	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko02048	-	-	-	N6_N4_Mtase
DYD3_k127_4052955_2	1207063.P24_03231	1.575e-62	220.0	COG0164@1|root,COG0164@2|Bacteria,1RA65@1224|Proteobacteria,2U73X@28211|Alphaproteobacteria,2JS6F@204441|Rhodospirillales	204441|Rhodospirillales	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhB	-	3.1.26.4	ko:K03470	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	RNase_HII
DYD3_k127_4052955_1	189753.AXAS01000070_gene7973	3.783e-75	267.0	COG5588@1|root,COG5588@2|Bacteria,1RGIE@1224|Proteobacteria,2U11D@28211|Alphaproteobacteria,3JWPG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1326)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1326
DYD3_k127_4052955_3	1366050.N234_36240	3.595e-08	56.0	COG5486@1|root,COG5486@2|Bacteria,1NFSK@1224|Proteobacteria,2VZZR@28216|Betaproteobacteria,1KI9K@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Predicted metal-binding integral membrane protein (DUF2182)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2182
DYD3_k127_4056772_0	1333998.M2A_2722	2.247e-210	661.0	COG0621@1|root,COG0621@2|Bacteria,1MU7N@1224|Proteobacteria,2TQUS@28211|Alphaproteobacteria,4BRU9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12	rimO	-	2.8.4.4	ko:K14441	-	-	R10652	RC00003,RC03217	ko00000,ko01000,ko03009	-	-	-	Radical_SAM,TRAM,UPF0004
DYD3_k127_4056772_4	196490.AUEZ01000007_gene5214	1.693e-94	320.0	COG2017@1|root,COG2017@2|Bacteria,1MVR4@1224|Proteobacteria,2TZZR@28211|Alphaproteobacteria,3JUE5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Aldose 1-epimerase	-	-	-	-	-	-	-	-	-	-	-	-	Aldose_epim
DYD3_k127_4056772_8	397945.Aave_0080	6.282e-24	102.0	2DNSI@1|root,32YXC@2|Bacteria,1N7K2@1224|Proteobacteria,2VVXF@28216|Betaproteobacteria,4AFCE@80864|Comamonadaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4056772_5	1040989.AWZU01000004_gene6943	6.48e-90	302.0	COG0639@1|root,COG0639@2|Bacteria,1MUV1@1224|Proteobacteria,2TSFT@28211|Alphaproteobacteria,3JSJA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Calcineurin-like phosphoesterase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos_2
DYD3_k127_4056772_2	1410620.SHLA_87c000160	1.74e-188	599.0	COG0515@1|root,COG0589@1|root,COG0515@2|Bacteria,COG0589@2|Bacteria,1MV1P@1224|Proteobacteria,2TQTS@28211|Alphaproteobacteria,4BC9U@82115|Rhizobiaceae	28211|Alphaproteobacteria	KLT	Protein tyrosine kinase	MA20_09295	-	-	-	-	-	-	-	-	-	-	-	Pkinase,Usp
DYD3_k127_4056772_9	1502724.FF80_02079	4.046e-13	78.0	COG3126@1|root,COG3187@1|root,COG3126@2|Bacteria,COG3187@2|Bacteria,1N8AF@1224|Proteobacteria,2VB2P@28211|Alphaproteobacteria,3N91A@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	O	Type III secretion system lipoprotein chaperone (YscW)	-	-	-	ko:K09914	-	-	-	-	ko00000	-	-	-	META,YscW
DYD3_k127_4056772_7	1101190.ARWB01000001_gene1376	4.84e-76	257.0	COG0780@1|root,COG0780@2|Bacteria,1MW0M@1224|Proteobacteria,2U57X@28211|Alphaproteobacteria,36Y1Z@31993|Methylocystaceae	28211|Alphaproteobacteria	S	QueF-like protein	queF	-	1.7.1.13	ko:K09457	ko00790,ko01100,map00790,map01100	-	R07605	RC01875	ko00000,ko00001,ko01000,ko03016	-	-	-	QueF
DYD3_k127_4056772_3	595536.ADVE02000001_gene937	5.011e-147	474.0	COG0598@1|root,COG0598@2|Bacteria,1MX09@1224|Proteobacteria,2TT1M@28211|Alphaproteobacteria,36XSM@31993|Methylocystaceae	28211|Alphaproteobacteria	P	CorA-like Mg2+ transporter protein	corA	-	-	ko:K03284	-	-	-	-	ko00000,ko02000	1.A.35.1,1.A.35.3	-	-	CorA
DYD3_k127_4056772_1	279714.FuraDRAFT_1546	6.243e-190	608.0	COG0598@1|root,COG0598@2|Bacteria,1R7FC@1224|Proteobacteria,2VKBA@28216|Betaproteobacteria	28216|Betaproteobacteria	P	Magnesium transport protein CorA	-	-	-	-	-	-	-	-	-	-	-	-	CorA
DYD3_k127_4056772_6	460265.Mnod_6747	1.9e-85	285.0	COG0602@1|root,COG0602@2|Bacteria,1MUJ2@1224|Proteobacteria,2TU1S@28211|Alphaproteobacteria,1JRX9@119045|Methylobacteriaceae	28211|Alphaproteobacteria	H	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	queE	-	4.3.99.3	ko:K10026	ko00790,ko01100,map00790,map01100	-	R10002	RC02989	ko00000,ko00001,ko01000,ko03016	-	-	-	Fer4_14,Radical_SAM
DYD3_k127_4058577_9	1316936.K678_06737	3.526e-64	224.0	COG1762@1|root,COG1762@2|Bacteria,1RD0E@1224|Proteobacteria,2U7B0@28211|Alphaproteobacteria,2JS6Q@204441|Rhodospirillales	204441|Rhodospirillales	GT	COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type)	ptsN	-	-	ko:K02806	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	PTS_EIIA_2
DYD3_k127_4058577_10	414684.RC1_3204	6.767e-60	214.0	COG1544@1|root,COG1544@2|Bacteria,1MZHW@1224|Proteobacteria,2TV3J@28211|Alphaproteobacteria,2JSGQ@204441|Rhodospirillales	204441|Rhodospirillales	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase	hpf	-	-	-	-	-	-	-	-	-	-	-	Ribosom_S30AE_C,Ribosomal_S30AE
DYD3_k127_4058577_11	1082931.KKY_3432	3.034e-54	192.0	COG1508@1|root,COG1508@2|Bacteria,1MW4V@1224|Proteobacteria,2TS41@28211|Alphaproteobacteria,3N637@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	rpoN	-	-	ko:K03092	ko02020,ko05111,map02020,map05111	-	-	-	ko00000,ko00001,ko03021	-	-	-	Sigma54_AID,Sigma54_CBD,Sigma54_DBD
DYD3_k127_4058577_8	1150626.PHAMO_40082	7.423e-97	329.0	COG1508@1|root,COG1508@2|Bacteria,1MW4V@1224|Proteobacteria,2TS41@28211|Alphaproteobacteria,2JPA9@204441|Rhodospirillales	204441|Rhodospirillales	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	rpoN	-	-	ko:K03092	ko02020,ko05111,map02020,map05111	-	-	-	ko00000,ko00001,ko03021	-	-	-	Sigma54_AID,Sigma54_CBD,Sigma54_DBD
DYD3_k127_4058577_4	1110502.TMO_0178	5.434e-118	390.0	COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,2TR7F@28211|Alphaproteobacteria,2JPX9@204441|Rhodospirillales	204441|Rhodospirillales	S	ABC transporter, ATP-binding protein	lptB	-	-	ko:K06861	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	1.B.42.1	-	-	ABC_tran,BCA_ABC_TP_C
DYD3_k127_4058577_14	631454.N177_1234	2.863e-32	133.0	COG1934@1|root,COG1934@2|Bacteria,1MXGA@1224|Proteobacteria,2U6DD@28211|Alphaproteobacteria,1JP63@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	OstA-like protein	lptA	-	-	ko:K09774	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	OstA
DYD3_k127_4058577_15	1234595.C725_1785	2.838e-18	93.0	COG5375@1|root,COG5375@2|Bacteria,1NMV8@1224|Proteobacteria	1224|Proteobacteria	S	Protein conserved in bacteria	-	-	-	ko:K11719	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	LptC
DYD3_k127_4058577_3	1279038.KB907346_gene3249	3.432e-119	393.0	COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,1MUXD@1224|Proteobacteria,2TU5X@28211|Alphaproteobacteria,2JPK0@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the SIS family. GutQ KpsF subfamily	kpsF	-	5.3.1.13	ko:K06041	ko00540,ko01100,map00540,map01100	M00063	R01530	RC00541	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CBS,SIS
DYD3_k127_4058577_7	290400.Jann_0228	3.953e-98	324.0	COG0349@1|root,COG0349@2|Bacteria,1MWFD@1224|Proteobacteria,2TQXS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	3-5 exonuclease	rnd1	-	3.1.13.5	ko:K03684	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DNA_pol_A_exo1
DYD3_k127_4058577_6	1479238.JQMZ01000001_gene198	8.699e-103	342.0	COG3000@1|root,COG3000@2|Bacteria,1R48K@1224|Proteobacteria,2U4WF@28211|Alphaproteobacteria,43YS7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	I	Fatty acid hydroxylase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	FA_hydroxylase
DYD3_k127_4058577_13	1265502.KB905933_gene2086	3.288e-34	144.0	COG2207@1|root,COG2207@2|Bacteria,1R7PM@1224|Proteobacteria,2VVAX@28216|Betaproteobacteria	28216|Betaproteobacteria	K	Arabinose-binding domain of AraC transcription regulator, N-term	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_4058577_5	1120792.JAFV01000001_gene2440	2.415e-114	377.0	COG0702@1|root,COG0702@2|Bacteria,1MW54@1224|Proteobacteria,2TQMD@28211|Alphaproteobacteria,36XCH@31993|Methylocystaceae	28211|Alphaproteobacteria	GM	NmrA-like family	MA20_24380	-	1.6.5.3,1.6.99.3	ko:K00329,ko:K00356	ko00190,map00190	-	R11945	RC00061	ko00000,ko00001,ko01000	-	-	-	3Beta_HSD,Epimerase,NAD_binding_10,RmlD_sub_bind
DYD3_k127_4058577_2	438753.AZC_0929	9.303e-141	453.0	COG0604@1|root,COG0604@2|Bacteria,1MWBD@1224|Proteobacteria,2TS3Z@28211|Alphaproteobacteria,3EYXF@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	PFAM Alcohol dehydrogenase zinc-binding domain protein	-	GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003960,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016651,GO:0016655,GO:0017091,GO:0033554,GO:0034599,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097159,GO:1901363	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_4058577_12	68570.DC74_1216	4.597e-38	145.0	COG0640@1|root,COG0640@2|Bacteria,2IKW0@201174|Actinobacteria	201174|Actinobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_4058577_1	1380394.JADL01000001_gene2303	8.756e-239	745.0	COG0493@1|root,COG0493@2|Bacteria,1MU2H@1224|Proteobacteria,2TSE2@28211|Alphaproteobacteria,2JQ6Q@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases	gltD	-	1.4.1.13,1.4.1.14	ko:K00266	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	-	R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000	-	-	-	Fer4_20,Pyr_redox_2
DYD3_k127_4058577_0	570952.ATVH01000020_gene1086	0.0	2146.0	COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,2TRHQ@28211|Alphaproteobacteria,2JPK2@204441|Rhodospirillales	204441|Rhodospirillales	E	glutamate synthase	gltB	-	1.4.1.13,1.4.1.14	ko:K00265	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	-	R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000	-	-	-	GATase_2,GXGXG,Glu_syn_central,Glu_synthase
DYD3_k127_4098844_5	1207063.P24_01035	1.972e-172	549.0	COG3964@1|root,COG3964@2|Bacteria,1MVC7@1224|Proteobacteria,2TSUD@28211|Alphaproteobacteria,2JRGD@204441|Rhodospirillales	204441|Rhodospirillales	S	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1,Amidohydro_3
DYD3_k127_4098844_9	1297865.APJD01000010_gene5068	1.148e-87	296.0	COG3665@1|root,COG3665@2|Bacteria,1N9DM@1224|Proteobacteria,2UIXE@28211|Alphaproteobacteria,3K13Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1989)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1989
DYD3_k127_4098844_10	224911.27354528	2.672e-68	246.0	COG0503@1|root,COG0503@2|Bacteria,1RDFW@1224|Proteobacteria,2U5J8@28211|Alphaproteobacteria,3K1CK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Phosphoribosyl transferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Pribosyltran
DYD3_k127_4098844_6	426117.M446_3852	1.801e-137	441.0	COG2159@1|root,COG2159@2|Bacteria,1MUUR@1224|Proteobacteria,2TSQB@28211|Alphaproteobacteria,1JU4V@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM amidohydrolase 2	-	-	-	ko:K07045	-	-	-	-	ko00000	-	-	-	Amidohydro_2
DYD3_k127_4098844_1	426117.M446_3854	4.961e-240	752.0	COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,2TSR0@28211|Alphaproteobacteria,1JY2I@119045|Methylobacteriaceae	28211|Alphaproteobacteria	Q	Phytoene dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase,NAD_binding_8
DYD3_k127_4098844_2	426117.M446_3855	2.674e-227	715.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2U3E3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	-	-	6.2.1.48	ko:K02182	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4098844_0	426117.M446_3859	7.034e-245	764.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,1JT7V@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	belongs to the aldehyde dehydrogenase family	-	-	1.2.1.54,1.2.1.99	ko:K09472,ko:K12254	ko00330,ko01100,map00330,map01100	M00136	R02549,R03177,R07417,R07418	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_4098844_8	426117.M446_3860	7.318e-91	309.0	COG0583@1|root,COG0583@2|Bacteria,1NW10@1224|Proteobacteria,2VFI3@28211|Alphaproteobacteria,1JZDG@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4098844_7	1121033.AUCF01000006_gene4329	2.255e-132	430.0	COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2TRRH@28211|Alphaproteobacteria,2JR8Q@204441|Rhodospirillales	204441|Rhodospirillales	BQ	Histone deacetylase domain	-	-	-	-	-	-	-	-	-	-	-	-	Hist_deacetyl
DYD3_k127_4098844_4	349102.Rsph17025_2835	5.295e-183	586.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,1FB7N@1060|Rhodobacter	28211|Alphaproteobacteria	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	2.6.1.113	ko:K12256	ko00330,ko01100,map00330,map01100	-	R08714	RC00008,RC00062	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_4098844_11	349102.Rsph17025_2840	6.97e-38	151.0	COG1309@1|root,COG1309@2|Bacteria,1RDM7@1224|Proteobacteria,2U83S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	ko:K02167	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_6,TetR_N
DYD3_k127_4098844_3	1380394.JADL01000004_gene5999	2.031e-189	607.0	COG0747@1|root,COG0747@2|Bacteria,1MUPE@1224|Proteobacteria,2TS4U@28211|Alphaproteobacteria,2JP86@204441|Rhodospirillales	204441|Rhodospirillales	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
DYD3_k127_4098844_12	388401.RB2150_13191	7.405e-33	132.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3ZGR9@58840|unclassified Rhodobacteraceae	1224|Proteobacteria	C	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate	-	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_4101746_3	1123519.PSJM300_17660	1.715e-102	343.0	COG0577@1|root,COG1136@1|root,COG0577@2|Bacteria,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,1RNUJ@1236|Gammaproteobacteria,1Z3Q4@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	V	MacB-like periplasmic core domain	macB	-	-	ko:K05685	ko02010,map02010	M00709	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.122.1,3.A.1.122.12	-	-	ABC_tran,FtsX,MacB_PCD
DYD3_k127_4101746_1	1523503.JPMY01000042_gene2979	2.495e-128	422.0	COG0845@1|root,COG0845@2|Bacteria,1MU8D@1224|Proteobacteria,1RN0E@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	macA	-	-	ko:K02005,ko:K13888	-	M00709	-	-	ko00000,ko00002,ko02000	8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_4101746_4	690850.Desaf_2008	3.037e-91	306.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,42MG4@68525|delta/epsilon subdivisions,2X5VM@28221|Deltaproteobacteria,2MGY8@213115|Desulfovibrionales	28221|Deltaproteobacteria	K	response regulator, receiver	-	-	-	ko:K02483,ko:K07662	ko01503,ko02020,map01503,map02020	M00447,M00727,M00728	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_4101746_2	690850.Desaf_2007	7.739e-118	394.0	COG0642@1|root,COG2205@2|Bacteria,1N17V@1224|Proteobacteria,42RJ8@68525|delta/epsilon subdivisions,2WNYS@28221|Deltaproteobacteria,2MB13@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	PFAM ATP-binding region ATPase domain protein	-	-	2.7.13.3	ko:K02484,ko:K07640	ko01503,ko02020,map01503,map02020	M00447,M00727,M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	7TMR-DISM_7TM,HAMP,HATPase_c,HisKA
DYD3_k127_4101746_5	1267005.KB911258_gene267	1.098e-66	232.0	COG0346@1|root,COG0346@2|Bacteria,1RCYX@1224|Proteobacteria,2U7A8@28211|Alphaproteobacteria,3N6VW@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	gloA	GO:0003674,GO:0003824,GO:0004462,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016846,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564	4.4.1.5	ko:K01759	ko00620,map00620	-	R02530	RC00004,RC00740	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
DYD3_k127_4101746_0	450851.PHZ_c2510	1.42e-193	610.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2U0WI@28211|Alphaproteobacteria,2KG8Q@204458|Caulobacterales	204458|Caulobacterales	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_411177_2	631454.N177_0363	1.005e-61	220.0	COG0115@1|root,COG0115@2|Bacteria,1MZAK@1224|Proteobacteria,2U9QU@28211|Alphaproteobacteria,1JQ7D@119043|Rhodobiaceae	28211|Alphaproteobacteria	EH	Amino-transferase class IV	-	-	2.6.1.42,4.1.3.38	ko:K00826,ko:K02619	ko00270,ko00280,ko00290,ko00770,ko00790,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map00790,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R05553,R10991	RC00006,RC00036,RC01843,RC02148	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_4
DYD3_k127_411177_1	1122137.AQXF01000001_gene2736	7.589e-91	306.0	COG0455@1|root,COG0455@2|Bacteria,1MW3G@1224|Proteobacteria,2TRR6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	GSCFA domain protein	-	-	-	-	-	-	-	-	-	-	-	-	GSCFA
DYD3_k127_411177_3	1096546.WYO_5206	1.215e-52	200.0	COG0455@1|root,COG0455@2|Bacteria,1MW3G@1224|Proteobacteria,2TRR6@28211|Alphaproteobacteria,1JSK9@119045|Methylobacteriaceae	28211|Alphaproteobacteria	D	GSCFA family	-	-	-	-	-	-	-	-	-	-	-	-	GSCFA
DYD3_k127_411177_4	661478.OP10G_4097	1.257e-16	88.0	28SX9@1|root,2ZF6S@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_411177_0	469371.Tbis_1905	1.085e-217	687.0	COG0318@1|root,COG0318@2|Bacteria,2GJAA@201174|Actinobacteria,4DZE9@85010|Pseudonocardiales	201174|Actinobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_411177_5	1192034.CAP_7582	1.905e-14	74.0	COG1141@1|root,COG1141@2|Bacteria,1QAPI@1224|Proteobacteria,4357M@68525|delta/epsilon subdivisions,2X96K@28221|Deltaproteobacteria,2Z28A@29|Myxococcales	28221|Deltaproteobacteria	C	Divergent 4Fe-4S mono-cluster	-	-	-	ko:K05337	-	-	-	-	ko00000	-	-	-	Fer4_15
DYD3_k127_4141691_4	1082931.KKY_1869	3.955e-59	208.0	COG1734@1|root,COG1734@2|Bacteria,1RD08@1224|Proteobacteria,2U74V@28211|Alphaproteobacteria,3N6TW@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	T	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters	dksA	-	-	ko:K06204	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000,ko03009,ko03021	-	-	-	zf-dskA_traR
DYD3_k127_4141691_2	1333998.M2A_1236	6.323e-80	282.0	COG2063@1|root,COG2063@2|Bacteria,1RDEY@1224|Proteobacteria,2TRHN@28211|Alphaproteobacteria,4BPYB@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation	flgH	-	-	ko:K02393	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlgH
DYD3_k127_4141691_6	1161401.ASJA01000004_gene2343	4.62e-19	94.0	COG1261@1|root,COG1261@2|Bacteria,1PM4C@1224|Proteobacteria,2TRUS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly	flgA	-	-	ko:K02386	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	ChapFlgA
DYD3_k127_4141691_1	402881.Plav_2561	1.511e-105	364.0	COG4786@1|root,COG4786@2|Bacteria,1MVMA@1224|Proteobacteria,2TRR4@28211|Alphaproteobacteria,1JNRD@119043|Rhodobiaceae	28211|Alphaproteobacteria	N	Flagellar basal body rod FlgEFG protein C-terminal	flgG	-	-	ko:K02392	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_4141691_3	69395.JQLZ01000001_gene2741	1.878e-63	228.0	COG4786@1|root,COG4786@2|Bacteria,1PZ24@1224|Proteobacteria,2U06G@28211|Alphaproteobacteria,2KGAM@204458|Caulobacterales	204458|Caulobacterales	N	Belongs to the flagella basal body rod proteins family	flgF	-	-	ko:K02391	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_4141691_5	1316936.K678_07472	9.207e-40	156.0	COG1580@1|root,COG1580@2|Bacteria,1RH5D@1224|Proteobacteria,2U9BF@28211|Alphaproteobacteria,2JST8@204441|Rhodospirillales	204441|Rhodospirillales	N	Controls the rotational direction of flagella during chemotaxis	fliL	-	-	ko:K02415	-	-	-	-	ko00000,ko02035	-	-	-	FliL
DYD3_k127_4141691_0	1282876.BAOK01000001_gene1534	1.643e-135	439.0	COG1868@1|root,COG1868@2|Bacteria,1MX01@1224|Proteobacteria,2TR4F@28211|Alphaproteobacteria,4BPME@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliM	-	-	ko:K02416	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliM,FliMN_C
DYD3_k127_4161001_1	1173027.Mic7113_3342	6.077e-110	367.0	COG0457@1|root,COG0457@2|Bacteria,1G42F@1117|Cyanobacteria,1HEPF@1150|Oscillatoriales	1117|Cyanobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4161001_3	323097.Nham_3656	6.361e-54	193.0	COG1917@1|root,COG1917@2|Bacteria,1RHMM@1224|Proteobacteria,2U9W3@28211|Alphaproteobacteria,3K0B4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_4161001_4	1211777.BN77_0577	1.17e-28	119.0	COG0762@1|root,COG0762@2|Bacteria,1N73Q@1224|Proteobacteria,2UFZR@28211|Alphaproteobacteria,4BF92@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	integral membrane protein	MA20_25225	-	-	ko:K02221	-	-	-	-	ko00000,ko02044	-	-	-	YGGT
DYD3_k127_4161001_5	1101191.KI912577_gene4261	2.802e-21	98.0	COG1872@1|root,COG1872@2|Bacteria,1PMJY@1224|Proteobacteria,2V06N@28211|Alphaproteobacteria,1JVIA@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0235 family	-	-	-	ko:K09131	-	-	-	-	ko00000	-	-	-	DUF167
DYD3_k127_4161001_0	318586.Pden_2614	2.329e-125	407.0	COG0190@1|root,COG0190@2|Bacteria,1MWU4@1224|Proteobacteria,2TRZZ@28211|Alphaproteobacteria,2PU5T@265|Paracoccus	28211|Alphaproteobacteria	H	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	folD	-	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000	-	-	-	THF_DHG_CYH,THF_DHG_CYH_C
DYD3_k127_4161001_2	331869.BAL199_04464	3.844e-68	237.0	COG0834@1|root,COG0834@2|Bacteria,1RHMR@1224|Proteobacteria,2U942@28211|Alphaproteobacteria,4BS5Y@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	ET	ABC-type amino acid transport signal transduction systems periplasmic component domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4174180_0	1089552.KI911559_gene223	4.348e-60	211.0	COG1309@1|root,COG1309@2|Bacteria,1R44G@1224|Proteobacteria,2TTF0@28211|Alphaproteobacteria,2JU17@204441|Rhodospirillales	204441|Rhodospirillales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_4174180_3	1177928.TH2_07316	3.906e-07	55.0	COG4541@1|root,COG4541@2|Bacteria,1NJCY@1224|Proteobacteria,2VC9M@28211|Alphaproteobacteria,2JY8I@204441|Rhodospirillales	204441|Rhodospirillales	S	Branched-chain amino acid transport protein (AzlD)	-	-	-	-	-	-	-	-	-	-	-	-	AzlD
DYD3_k127_4174180_1	522373.Smlt2754	2.813e-49	185.0	COG1296@1|root,COG1296@2|Bacteria,1Q43G@1224|Proteobacteria,1S31F@1236|Gammaproteobacteria,1X957@135614|Xanthomonadales	135614|Xanthomonadales	E	AzlC protein	-	-	-	-	-	-	-	-	-	-	-	-	AzlC
DYD3_k127_4174180_2	1337093.MBE-LCI_3280	1.375e-31	123.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRKS@28211|Alphaproteobacteria,2P9JP@245186|Loktanella	28211|Alphaproteobacteria	H	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	acsA	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
DYD3_k127_419329_1	1430440.MGMSRv2_1698	5.885e-97	324.0	COG0351@1|root,COG0351@2|Bacteria,1MU9J@1224|Proteobacteria,2TUKR@28211|Alphaproteobacteria,2JPMV@204441|Rhodospirillales	204441|Rhodospirillales	H	Phosphomethylpyrimidine kinase	thiD	-	2.7.1.49,2.7.4.7	ko:K00941	ko00730,ko01100,map00730,map01100	M00127	R03471,R04509	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Phos_pyr_kin
DYD3_k127_419329_0	629773.AORY01000005_gene2758	2.422e-187	594.0	COG1109@1|root,COG1109@2|Bacteria,1MU24@1224|Proteobacteria,2TQWH@28211|Alphaproteobacteria,2JZV4@204457|Sphingomonadales	204457|Sphingomonadales	G	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate	glmM	-	5.4.2.10	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	-	R02060	RC00408	ko00000,ko00001,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
DYD3_k127_419329_2	272942.RCAP_rcc01211	2.447e-83	285.0	COG0294@1|root,COG0294@2|Bacteria,1MUIR@1224|Proteobacteria,2TTMG@28211|Alphaproteobacteria,1FBAB@1060|Rhodobacter	28211|Alphaproteobacteria	H	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives	folP	-	2.5.1.15,2.7.6.3	ko:K00796,ko:K13941	ko00790,ko01100,map00790,map01100	M00126,M00840,M00841	R03066,R03067,R03503	RC00002,RC00017,RC00121,RC00842	ko00000,ko00001,ko00002,ko01000	-	-	-	Pterin_bind
DYD3_k127_4208378_3	1304878.AUGD01000007_gene5723	1.871e-54	194.0	COG1075@1|root,COG1075@2|Bacteria,1NJNA@1224|Proteobacteria,2TSQC@28211|Alphaproteobacteria,3JV19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha beta hydrolase	MA20_16655	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6,DUF676,Hydrolase_4
DYD3_k127_4208378_2	1122604.JONR01000020_gene491	2.03e-127	427.0	COG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,1RQJX@1236|Gammaproteobacteria,1XA0C@135614|Xanthomonadales	135614|Xanthomonadales	Q	Protein of unknown function (DUF1298)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1298,WES_acyltransf
DYD3_k127_4208378_0	1123504.JQKD01000003_gene624	3.887e-245	769.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2W0M7@28216|Betaproteobacteria,4AGAJ@80864|Comamonadaceae	28216|Betaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4208378_1	1242864.D187_003204	2.242e-164	524.0	COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,43EAF@68525|delta/epsilon subdivisions,2X34W@28221|Deltaproteobacteria,2YUA3@29|Myxococcales	28221|Deltaproteobacteria	S	N-terminal domain of oxidoreductase	-	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
DYD3_k127_4208378_4	228405.HNE_0378	1.118e-46	171.0	COG1873@1|root,COG1873@2|Bacteria,1MYBI@1224|Proteobacteria,2U97H@28211|Alphaproteobacteria,43ZUM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
DYD3_k127_4215314_4	1238182.C882_3632	7.658e-42	160.0	COG1595@1|root,COG1595@2|Bacteria,1N1F5@1224|Proteobacteria,2UH0S@28211|Alphaproteobacteria,2JU5D@204441|Rhodospirillales	204441|Rhodospirillales	K	Sigma-70, region 4	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_4215314_0	717785.HYPMC_0865	9.526e-113	398.0	COG4625@1|root,COG4625@2|Bacteria,1MU92@1224|Proteobacteria,2TSB7@28211|Alphaproteobacteria,3N7H3@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	M	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,PATR
DYD3_k127_4215314_3	1207063.P24_05464	5.988e-70	243.0	COG3703@1|root,COG3703@2|Bacteria,1QA7D@1224|Proteobacteria,2U84Q@28211|Alphaproteobacteria,2JZR9@204441|Rhodospirillales	204441|Rhodospirillales	P	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides	-	-	-	ko:K07232	-	-	-	-	ko00000	-	-	-	ChaC
DYD3_k127_4215314_5	1238182.C882_2018	2.291e-19	92.0	COG2960@1|root,COG2960@2|Bacteria,1N725@1224|Proteobacteria,2UFEP@28211|Alphaproteobacteria,2JU3E@204441|Rhodospirillales	204441|Rhodospirillales	S	Membrane fusogenic activity	-	-	-	ko:K09806	-	-	-	-	ko00000	-	-	-	BMFP
DYD3_k127_4215314_1	1528106.JRJE01000008_gene1566	7.998e-96	323.0	COG0682@1|root,COG0682@2|Bacteria,1MVE3@1224|Proteobacteria,2TTNS@28211|Alphaproteobacteria,2JQ56@204441|Rhodospirillales	204441|Rhodospirillales	M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	lgt	-	-	ko:K13292	-	-	-	-	ko00000,ko01000	-	-	-	LGT
DYD3_k127_4215314_2	1123229.AUBC01000023_gene1302	6.825e-85	289.0	COG1565@1|root,COG1565@2|Bacteria,1N3CJ@1224|Proteobacteria,2TRHW@28211|Alphaproteobacteria,3JRRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative S-adenosyl-L-methionine-dependent methyltransferase	MA20_05390	-	2.1.1.79	ko:K00574,ko:K18164	ko04714,map04714	-	-	-	ko00000,ko00001,ko01000,ko03029	-	-	-	Methyltransf_28
DYD3_k127_4215521_3	1336235.JAEG01000006_gene910	5.321e-110	357.0	COG0446@1|root,COG1902@1|root,COG0446@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TZTW@28211|Alphaproteobacteria,4BBI0@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	tmd	-	1.5.8.1,1.5.8.2	ko:K00317	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R01588,R02511	RC00185,RC00556,RC00557,RC00732	ko00000,ko00001,ko01000	-	-	-	NAD_binding_8,Oxidored_FMN,Pyr_redox_2
DYD3_k127_4215521_1	1297570.MESS4_670043	6.056e-141	458.0	COG0624@1|root,COG0624@2|Bacteria,1MVBR@1224|Proteobacteria,2TRUK@28211|Alphaproteobacteria,43HWQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Belongs to the peptidase M20A family. ArgE subfamily	argE_2	-	3.5.1.16	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R00669,R09107	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_4215521_9	438753.AZC_0204	8.27e-53	189.0	COG0583@1|root,COG0583@2|Bacteria,1MU8N@1224|Proteobacteria,2TUQK@28211|Alphaproteobacteria,3EYMZ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4215521_4	639283.Snov_2633	2.596e-82	277.0	COG0583@1|root,COG0583@2|Bacteria,1MU8N@1224|Proteobacteria,2TUQK@28211|Alphaproteobacteria,3EYMZ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4215521_5	246200.SPO3679	4.224e-82	278.0	COG3342@1|root,COG3342@2|Bacteria,1MWQT@1224|Proteobacteria,2TRJZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Family of unknown function (DUF1028)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1028
DYD3_k127_4215521_7	1336235.JAEG01000006_gene905	4.381e-69	246.0	COG0251@1|root,COG0251@2|Bacteria,1RAKQ@1224|Proteobacteria,2U5F4@28211|Alphaproteobacteria,4BEEK@82115|Rhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
DYD3_k127_4215521_0	1336235.JAEG01000006_gene907	2.803e-290	895.0	COG2368@1|root,COG2368@2|Bacteria,1PEQG@1224|Proteobacteria,2TVQ7@28211|Alphaproteobacteria,4B9MT@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	4-hydroxyphenylacetate 3-hydroxylase C terminal	-	-	1.14.14.9	ko:K00483	ko00350,ko01120,ko01220,map00350,map01120,map01220	-	R02698,R03299	RC00046	ko00000,ko00001,ko01000	-	-	-	HpaB,HpaB_N
DYD3_k127_4215521_11	1297570.MESS4_50071	6.671e-32	127.0	2E0ZE@1|root,32WFP@2|Bacteria,1N34I@1224|Proteobacteria,2UCN6@28211|Alphaproteobacteria,43PX3@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4215521_8	1380394.JADL01000002_gene1630	4.266e-59	207.0	COG1487@1|root,COG1487@2|Bacteria,1RBK3@1224|Proteobacteria,2U5AG@28211|Alphaproteobacteria,2JYGW@204441|Rhodospirillales	204441|Rhodospirillales	S	PIN domain	-	-	-	ko:K07062	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PIN
DYD3_k127_4215521_12	937774.TEQUI_1596	7.154e-11	69.0	2E9KM@1|root,333TD@2|Bacteria,1NXI5@1224|Proteobacteria	1224|Proteobacteria	S	Immunity protein 26	-	-	-	-	-	-	-	-	-	-	-	-	Imm26
DYD3_k127_4215521_6	886293.Sinac_6970	8.19e-80	276.0	COG0454@1|root,COG0456@2|Bacteria,2J3QJ@203682|Planctomycetes	203682|Planctomycetes	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4215521_10	1231185.BAMP01000023_gene2884	7.134e-39	162.0	COG1522@1|root,COG1522@2|Bacteria,1RI7R@1224|Proteobacteria,2U9CC@28211|Alphaproteobacteria,43ISR@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	aldR	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
DYD3_k127_4215521_2	269796.Rru_A3686	2.446e-136	439.0	COG0686@1|root,COG0686@2|Bacteria,1QTX1@1224|Proteobacteria,2TQQC@28211|Alphaproteobacteria,2JQ2D@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the AlaDH PNT family	ald	-	1.4.1.1	ko:K00259	ko00250,ko00430,ko01100,map00250,map00430,map01100	-	R00396	RC00008	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
DYD3_k127_423623_4	1056820.KB900650_gene2942	7.169e-16	78.0	COG0378@1|root,COG0378@2|Bacteria,1MVBD@1224|Proteobacteria,1RP5R@1236|Gammaproteobacteria,2PMPA@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	KO	CobW/HypB/UreG, nucleotide-binding domain	ureG	-	-	ko:K03189	-	-	-	-	ko00000	-	-	-	cobW
DYD3_k127_423623_2	114615.BRADO6232	1.814e-26	114.0	2E5G8@1|root,3307X@2|Bacteria,1NK14@1224|Proteobacteria,2V9SW@28211|Alphaproteobacteria,3K5SE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Immunity protein 53	-	-	-	-	-	-	-	-	-	-	-	-	Imm53
DYD3_k127_423623_3	1280946.HY29_07050	3.737e-17	90.0	COG1309@1|root,COG1309@2|Bacteria,1MY6Y@1224|Proteobacteria,2UKSE@28211|Alphaproteobacteria,4408W@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_3,TetR_N
DYD3_k127_423623_0	399739.Pmen_1266	2.023e-83	286.0	COG4221@1|root,COG4221@2|Bacteria,1QTXD@1224|Proteobacteria,1T1MG@1236|Gammaproteobacteria,1YHE0@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_423623_1	1470593.BW43_02356	7.809e-58	214.0	COG3687@1|root,COG3687@2|Bacteria,1MWGV@1224|Proteobacteria,1RZKP@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Metal-dependent hydrolase	-	-	-	ko:K07044	-	-	-	-	ko00000	-	-	-	Metal_hydrol
DYD3_k127_4238809_1	59538.XP_005974541.1	5.459e-123	402.0	COG1960@1|root,KOG0141@2759|Eukaryota,38EIK@33154|Opisthokonta,3BCNP@33208|Metazoa,3CUQJ@33213|Bilateria,480QF@7711|Chordata,48YGG@7742|Vertebrata,3J1KM@40674|Mammalia,4J2VQ@91561|Cetartiodactyla	2759|Eukaryota	EI	Long-chain specific acyl-CoA dehydrogenase	-	-	-	ko:K15389	-	-	-	-	ko00000,ko01008	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N,Cyt-b5
DYD3_k127_4238809_6	1121106.JQKB01000012_gene4570	6.056e-12	74.0	2FCFP@1|root,344J5@2|Bacteria,1NZ16@1224|Proteobacteria,2UTXN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF4412
DYD3_k127_4238809_4	639283.Snov_4036	2.587e-16	88.0	2FCFP@1|root,344J5@2|Bacteria,1NZ16@1224|Proteobacteria,2UTXN@28211|Alphaproteobacteria,3EZVQ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF4412
DYD3_k127_4238809_0	402881.Plav_3240	2.57e-136	444.0	COG0183@1|root,COG0183@2|Bacteria,1MVPC@1224|Proteobacteria,2VEVD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	acetyl-coa acetyltransferase	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	-
DYD3_k127_4238809_5	665577.JH993790_gene5746	1.597e-14	78.0	COG0183@1|root,COG0183@2|Bacteria	2|Bacteria	I	Belongs to the thiolase family	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	-
DYD3_k127_4238809_2	402881.Plav_2700	1.251e-77	267.0	COG0494@1|root,COG0494@2|Bacteria,1NTFG@1224|Proteobacteria,2U0I4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Hydrolase	MA20_35615	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD3_k127_4238809_3	1382303.JPOM01000001_gene2368	4.454e-46	168.0	COG2030@1|root,COG2030@2|Bacteria,1MUR2@1224|Proteobacteria,2TUM7@28211|Alphaproteobacteria,2KHN2@204458|Caulobacterales	204458|Caulobacterales	I	N-terminal half of MaoC dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydrat_N,MaoC_dehydratas
DYD3_k127_4243132_0	983545.Glaag_3571	0.0	1114.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,1RN01@1236|Gammaproteobacteria,469ZG@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	MMPL family	-	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
DYD3_k127_4243132_1	402881.Plav_1156	6.939e-243	756.0	2C4IG@1|root,2Z8DE@2|Bacteria,1P2M2@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_4243132_3	1122604.JONR01000021_gene553	1.279e-70	250.0	COG4447@1|root,COG4447@2|Bacteria,1RF2F@1224|Proteobacteria,1S5HY@1236|Gammaproteobacteria,1X97U@135614|Xanthomonadales	135614|Xanthomonadales	S	protein related to plant photosystem II stability assembly factor	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4243132_2	402881.Plav_1158	5.197e-195	625.0	COG3419@1|root,COG3419@2|Bacteria,1R6MQ@1224|Proteobacteria	1224|Proteobacteria	NU	Tfp pilus assembly protein tip-associated adhesin	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4269929_1	1122603.ATVI01000010_gene977	1.186e-216	687.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,1RPHJ@1236|Gammaproteobacteria,1X5P8@135614|Xanthomonadales	135614|Xanthomonadales	I	Acetyl-CoA dehydrogenase C-terminal like	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N
DYD3_k127_4269929_5	1408419.JHYG01000013_gene2106	4.826e-57	207.0	COG0765@1|root,COG0765@2|Bacteria,1MX2Y@1224|Proteobacteria,2U1MU@28211|Alphaproteobacteria,2JSIC@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02029	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	BPD_transp_1
DYD3_k127_4269929_4	595494.Tola_1983	2.348e-78	268.0	COG0765@1|root,COG0765@2|Bacteria,1MVB6@1224|Proteobacteria,1RPGH@1236|Gammaproteobacteria,1Y6D7@135624|Aeromonadales	135624|Aeromonadales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02029	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	BPD_transp_1
DYD3_k127_4269929_3	1461694.ATO9_17080	2.646e-88	309.0	COG0834@1|root,COG0834@2|Bacteria,1MVT6@1224|Proteobacteria,2TU5Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	ET	belongs to the bacterial solute-binding protein 3 family	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_4269929_2	311402.Avi_2554	1.992e-127	412.0	COG1126@1|root,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,2TQX2@28211|Alphaproteobacteria,4B8RS@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	ABC-type polar amino acid transport system, ATPase component	aapP	-	3.6.3.21	ko:K02028,ko:K02029,ko:K09972	ko02010,map02010	M00232,M00236	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.17,3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	ABC_tran
DYD3_k127_4269929_0	991905.SL003B_2630	3.361e-247	781.0	COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria,2TRZD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.8	ko:K01537	-	-	-	-	ko00000,ko01000	3.A.3.2	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3
DYD3_k127_4274758_6	1380394.JADL01000004_gene6049	1.102e-78	276.0	COG1167@1|root,COG1167@2|Bacteria,1MUJE@1224|Proteobacteria,2TQZZ@28211|Alphaproteobacteria,2JPG0@204441|Rhodospirillales	204441|Rhodospirillales	K	COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
DYD3_k127_4274758_4	1163407.UU7_10556	2.532e-96	336.0	COG0657@1|root,COG0657@2|Bacteria,1QTF8@1224|Proteobacteria,1RXEH@1236|Gammaproteobacteria,1X655@135614|Xanthomonadales	135614|Xanthomonadales	I	Carboxylesterase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
DYD3_k127_4274758_3	1206737.BAGF01000041_gene2455	1.406e-135	437.0	COG1073@1|root,COG1073@2|Bacteria,2GNB6@201174|Actinobacteria,4FZTT@85025|Nocardiaceae	201174|Actinobacteria	S	BAAT / Acyl-CoA thioester hydrolase C terminal	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
DYD3_k127_4274758_9	1206739.BAGJ01000171_gene3584	5.111e-57	206.0	COG1309@1|root,COG1309@2|Bacteria,2IHQX@201174|Actinobacteria,4FVT5@85025|Nocardiaceae	201174|Actinobacteria	K	Tetracyclin repressor, C-terminal all-alpha domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C,TetR_N
DYD3_k127_4274758_1	1207063.P24_05294	1.018e-194	619.0	COG5476@1|root,COG5476@2|Bacteria,1MX4P@1224|Proteobacteria,2TS1C@28211|Alphaproteobacteria,2JV5S@204441|Rhodospirillales	204441|Rhodospirillales	S	MlrC C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	DUF1485,MlrC_C
DYD3_k127_4274758_7	1279038.KB907340_gene1571	2.298e-74	258.0	COG0670@1|root,COG0670@2|Bacteria,1MU69@1224|Proteobacteria,2TRSF@28211|Alphaproteobacteria,2JRZ2@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the BI1 family	-	-	-	ko:K06890	-	-	-	-	ko00000	-	-	-	Bax1-I
DYD3_k127_4274758_0	1380394.JADL01000001_gene2166	4.269e-249	796.0	COG3127@1|root,COG3127@2|Bacteria,1MU9R@1224|Proteobacteria,2TS8V@28211|Alphaproteobacteria,2JPVY@204441|Rhodospirillales	204441|Rhodospirillales	Q	ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_4274758_5	1316936.K678_08886	1.104e-91	307.0	COG4181@1|root,COG4181@2|Bacteria,1MXG9@1224|Proteobacteria,2TS0J@28211|Alphaproteobacteria,2JPTC@204441|Rhodospirillales	204441|Rhodospirillales	Q	ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_4274758_8	1121918.ARWE01000001_gene2808	3.58e-64	226.0	COG2755@1|root,COG2755@2|Bacteria,1RCXZ@1224|Proteobacteria,42SUC@68525|delta/epsilon subdivisions,2WPR4@28221|Deltaproteobacteria,43V8Y@69541|Desulfuromonadales	28221|Deltaproteobacteria	E	GDSL-like Lipase/Acylhydrolase family	-	-	3.1.1.5	ko:K10804	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	Lipase_GDSL_2
DYD3_k127_4274758_2	1033802.SSPSH_000811	2.343e-139	462.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,1RNXH@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	Aldo keto reductase	tas	GO:0003674,GO:0003824,GO:0004033,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016491,GO:0016614,GO:0016616,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034198,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0071496,GO:1990928	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD3_k127_4293852_2	1131814.JAFO01000001_gene3444	9.595e-134	434.0	COG1903@1|root,COG1903@2|Bacteria,1MXU3@1224|Proteobacteria,2TRFH@28211|Alphaproteobacteria,3F15E@335928|Xanthobacteraceae	28211|Alphaproteobacteria	H	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A	cbiD	-	2.1.1.195	ko:K02188	ko00860,ko01100,map00860,map01100	-	R07773	RC00003,RC02051	ko00000,ko00001,ko01000	-	-	-	CbiD
DYD3_k127_4293852_0	1446473.JHWH01000003_gene3379	1.505e-160	517.0	COG1797@1|root,COG1797@2|Bacteria,1MV7Z@1224|Proteobacteria,2TR0W@28211|Alphaproteobacteria,2PUMA@265|Paracoccus	28211|Alphaproteobacteria	H	Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L-glutamine or ammonia as the nitrogen source	cobB	-	6.3.5.11,6.3.5.9	ko:K02224	ko00860,ko01100,ko01120,map00860,map01100,map01120	-	R05224,R05815	RC00010,RC01301	ko00000,ko00001,ko01000	-	-	-	AAA_26,CbiA,GATase_3
DYD3_k127_4293852_3	76114.ebA3954	2.376e-07	61.0	COG1414@1|root,COG1414@2|Bacteria,1NMZV@1224|Proteobacteria,2VYEZ@28216|Betaproteobacteria,2KYSE@206389|Rhodocyclales	206389|Rhodocyclales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4293852_1	153948.NAL212_2836	3.138e-149	482.0	COG0457@1|root,COG0457@2|Bacteria,1QW33@1224|Proteobacteria	1224|Proteobacteria	S	TIGRFAM TIGR03032 family protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF4915,TPR_8
DYD3_k127_4293852_4	1502850.FG91_02169	0.0001952	50.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2TVPD@28211|Alphaproteobacteria,2K3RF@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4293852_5	78898.MVEG_02788T0	0.0002712	53.0	28KJF@1|root,2QT0W@2759|Eukaryota,39Z2Z@33154|Opisthokonta,3PCJA@4751|Fungi,1GRS1@112252|Fungi incertae sedis	4751|Fungi	S	Mortierella verticillata NRRL 6337	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4305670_2	1101190.ARWB01000001_gene1815	1.093e-05	54.0	COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TSJQ@28211|Alphaproteobacteria,36XXR@31993|Methylocystaceae	28211|Alphaproteobacteria	E	Domain of unknown function (DUF3382)	livM	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2,DUF3382
DYD3_k127_4305670_0	1121033.AUCF01000010_gene4555	1.273e-144	463.0	COG0559@1|root,COG0559@2|Bacteria,1MU25@1224|Proteobacteria,2TSDS@28211|Alphaproteobacteria,2JQSZ@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the binding-protein-dependent transport system permease family	livH	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
DYD3_k127_4305670_1	1041139.KB902578_gene5376	1.149e-57	215.0	COG0840@1|root,COG5000@1|root,COG0840@2|Bacteria,COG5000@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,4B9N4@82115|Rhizobiaceae	28211|Alphaproteobacteria	NT	chemotaxis protein	mcpT	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	4HB_MCP_1,HAMP,MCPsignal
DYD3_k127_4309871_1	1432055.GLUCORHAEAF1_03470	3.912e-128	419.0	COG3964@1|root,COG3964@2|Bacteria,1MVC7@1224|Proteobacteria,2TSUD@28211|Alphaproteobacteria,2JRGD@204441|Rhodospirillales	204441|Rhodospirillales	S	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1,Amidohydro_3
DYD3_k127_4309871_0	1380394.JADL01000007_gene4638	0.0	1076.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,2JRB6@204441|Rhodospirillales	204441|Rhodospirillales	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	-	-	-	-	-	-	-	-	-	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
DYD3_k127_4327370_5	272568.GDI2072	1.91e-51	189.0	COG2961@1|root,COG2961@2|Bacteria,1MWGA@1224|Proteobacteria,2TU5K@28211|Alphaproteobacteria,2JQRQ@204441|Rhodospirillales	204441|Rhodospirillales	J	Specifically methylates the adenine in position 2030 of 23S rRNA	rlmJ	-	2.1.1.266	ko:K07115	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	RsmJ
DYD3_k127_4327370_2	1150626.PHAMO_10258	5.859e-119	396.0	COG0144@1|root,COG0144@2|Bacteria,1MV2Q@1224|Proteobacteria,2TS6U@28211|Alphaproteobacteria,2JQD2@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family	-	-	2.1.1.176	ko:K03500	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltr_RsmB-F,Methyltr_RsmF_N
DYD3_k127_4327370_4	349521.HCH_06398	1.475e-51	185.0	COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,1S67I@1236|Gammaproteobacteria,1XJH4@135619|Oceanospirillales	135619|Oceanospirillales	K	at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA)	glnK-2	-	-	ko:K04752	-	-	-	-	ko00000	-	-	-	P-II
DYD3_k127_4327370_1	990285.RGCCGE502_23640	3.434e-221	700.0	COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,4B9PF@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Ammonium Transporter	amtB	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008519,GO:0015075,GO:0015291,GO:0015292,GO:0015669,GO:0015670,GO:0015696,GO:0015893,GO:0016020,GO:0016021,GO:0019755,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042221,GO:0042493,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072488,GO:0098655	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	Ammonium_transp
DYD3_k127_4327370_3	1120956.JHZK01000007_gene2915	2.391e-89	308.0	COG0053@1|root,COG0053@2|Bacteria,1MVH8@1224|Proteobacteria,2TVQV@28211|Alphaproteobacteria,1JPWT@119043|Rhodobiaceae	28211|Alphaproteobacteria	P	Cation efflux family	-	-	-	-	-	-	-	-	-	-	-	-	Cation_efflux,ZT_dimer
DYD3_k127_4327370_0	1333998.M2A_1989	1.5e-225	715.0	COG0318@1|root,COG0318@2|Bacteria,1MWSD@1224|Proteobacteria,2TU6Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4327370_7	1380391.JIAS01000019_gene1237	5.221e-06	56.0	2BS7J@1|root,32M8V@2|Bacteria,1NHSC@1224|Proteobacteria,2UNF0@28211|Alphaproteobacteria,2JUWY@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4327370_6	644548.SCNU_14004	1.869e-12	69.0	COG0583@1|root,COG0583@2|Bacteria,2GK13@201174|Actinobacteria,4GB5N@85026|Gordoniaceae	201174|Actinobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4330588_2	1380391.JIAS01000017_gene565	4.192e-102	338.0	COG0001@1|root,COG0001@2|Bacteria,1MUY5@1224|Proteobacteria,2TT6G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	5.4.3.8	ko:K01845	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02272	RC00677	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_4330588_0	317655.Sala_1118	3.764e-157	512.0	COG0174@1|root,COG0174@2|Bacteria,1MU6V@1224|Proteobacteria,2TTPD@28211|Alphaproteobacteria,2K2F2@204457|Sphingomonadales	204457|Sphingomonadales	E	Glutamine synthetase, catalytic domain	-	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_4330588_3	450851.PHZ_c0864	1.958e-61	221.0	COG4249@1|root,COG4249@2|Bacteria,1QU7W@1224|Proteobacteria,2U7FJ@28211|Alphaproteobacteria,2KGH3@204458|Caulobacterales	204458|Caulobacterales	S	Peptidase C13 family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C13
DYD3_k127_4330588_4	1121013.P873_08335	4.699e-33	142.0	COG1585@1|root,COG1585@2|Bacteria,1RG29@1224|Proteobacteria,1S7HI@1236|Gammaproteobacteria	1236|Gammaproteobacteria	OU	Protein of unknown function (DUF1449)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1449
DYD3_k127_4330588_1	1121396.KB892917_gene103	2.715e-136	462.0	COG2268@1|root,COG2268@2|Bacteria,1P50K@1224|Proteobacteria,42PJG@68525|delta/epsilon subdivisions,2WQ9J@28221|Deltaproteobacteria,2MMDR@213118|Desulfobacterales	28221|Deltaproteobacteria	S	Flotillin	-	-	-	ko:K07192	ko04910,map04910	-	-	-	ko00000,ko00001,ko03036,ko04131,ko04147	-	-	-	Band_7,Flot
DYD3_k127_4336653_0	1207063.P24_11065	0.0	1210.0	COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,2TQV4@28211|Alphaproteobacteria,2JQJ1@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	-	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
DYD3_k127_4336653_8	1294143.H681_22330	1.761e-20	95.0	COG4766@1|root,COG4766@2|Bacteria	2|Bacteria	E	ethanolamine catabolic process	-	-	-	ko:K04030	-	-	-	-	ko00000	-	-	-	EutQ
DYD3_k127_4336653_3	1380391.JIAS01000015_gene378	6.34e-102	345.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,2TSJ5@28211|Alphaproteobacteria,2JSFS@204441|Rhodospirillales	204441|Rhodospirillales	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	-	-	-	-	-	-	-	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_4336653_5	1192868.CAIU01000015_gene1910	1.256e-54	198.0	COG1396@1|root,COG1396@2|Bacteria	2|Bacteria	K	sequence-specific DNA binding	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2,HTH_3,HTH_31
DYD3_k127_4336653_1	1207063.P24_11060	5.673e-182	574.0	COG0468@1|root,COG0468@2|Bacteria,1MU3C@1224|Proteobacteria,2TRPR@28211|Alphaproteobacteria,2JPIZ@204441|Rhodospirillales	204441|Rhodospirillales	L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	recA	-	-	ko:K03553	ko03440,map03440	M00729	-	-	ko00000,ko00001,ko00002,ko03400	-	-	-	RecA
DYD3_k127_4336653_2	1282876.BAOK01000001_gene1548	5.281e-161	535.0	COG3437@1|root,COG4191@1|root,COG3437@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,4BP62@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	cckA	-	2.7.13.3	ko:K13587	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9,Response_reg
DYD3_k127_4336653_4	744980.TRICHSKD4_4346	6.605e-92	314.0	COG1377@1|root,COG1377@2|Bacteria,1MUWI@1224|Proteobacteria,2TS13@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin	flhB	-	-	ko:K02401	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_2
DYD3_k127_4336653_6	1333998.M2A_1219	6.12e-53	195.0	COG1684@1|root,COG1684@2|Bacteria,1NIF4@1224|Proteobacteria,2TTHN@28211|Alphaproteobacteria,4BQTZ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	Role in flagellar biosynthesis	fliR	-	-	ko:K02421	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_1
DYD3_k127_4336653_7	1333998.M2A_1220	1.76e-21	96.0	COG1987@1|root,COG1987@2|Bacteria,1N73W@1224|Proteobacteria,2UBX6@28211|Alphaproteobacteria,4BR1A@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	Role in flagellar biosynthesis	fliQ	-	-	ko:K02420	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_3
DYD3_k127_4336653_9	1380391.JIAS01000017_gene508	9.565e-13	69.0	COG1677@1|root,COG1677@2|Bacteria,1N7KU@1224|Proteobacteria,2UF4S@28211|Alphaproteobacteria,2JTWD@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellar hook-basal body	fliE	-	-	ko:K02408	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliE
DYD3_k127_433666_1	1207063.P24_10560	6.322e-127	412.0	COG0264@1|root,COG0264@2|Bacteria,1MUS2@1224|Proteobacteria,2TQM0@28211|Alphaproteobacteria,2JQWM@204441|Rhodospirillales	204441|Rhodospirillales	J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome	tsf	-	-	ko:K02357	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EF_TS
DYD3_k127_433666_2	1207063.P24_10565	7.16e-123	401.0	COG0052@1|root,COG0052@2|Bacteria,1MU33@1224|Proteobacteria,2TRXE@28211|Alphaproteobacteria,2JQ5J@204441|Rhodospirillales	204441|Rhodospirillales	J	Belongs to the universal ribosomal protein uS2 family	rpsB	-	-	ko:K02967	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S2
DYD3_k127_433666_6	349163.Acry_0281	2.631e-62	220.0	COG0454@1|root,COG0454@2|Bacteria,1QUS5@1224|Proteobacteria,2TY6E@28211|Alphaproteobacteria,2JYWR@204441|Rhodospirillales	204441|Rhodospirillales	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_433666_7	1219375.CM002140_gene4254	2.203e-35	136.0	COG4453@1|root,COG4453@2|Bacteria,1N7K8@1224|Proteobacteria,1SC3I@1236|Gammaproteobacteria,1X950@135614|Xanthomonadales	135614|Xanthomonadales	S	Protein of unknown function (DUF1778)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1778
DYD3_k127_433666_4	1122604.JONR01000025_gene4607	2.584e-68	234.0	COG3791@1|root,COG3791@2|Bacteria,1N3P3@1224|Proteobacteria,1S57G@1236|Gammaproteobacteria,1X8YJ@135614|Xanthomonadales	135614|Xanthomonadales	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_433666_10	1385517.N800_11145	0.0007563	48.0	COG0551@1|root,COG1787@1|root,COG0551@2|Bacteria,COG1787@2|Bacteria,1RAHG@1224|Proteobacteria,1RYIV@1236|Gammaproteobacteria,1X6AQ@135614|Xanthomonadales	135614|Xanthomonadales	V	Restriction endonuclease	-	-	-	ko:K07448	-	-	-	-	ko00000,ko02048	-	-	-	Mrr_cat,zf-C4_Topoisom
DYD3_k127_433666_5	113355.CM001775_gene1785	1.071e-63	238.0	COG0652@1|root,COG2931@1|root,COG0652@2|Bacteria,COG2931@2|Bacteria,1G1I0@1117|Cyanobacteria	1117|Cyanobacteria	Q	Hemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	He_PIG,HemolysinCabind,Peptidase_M10_C
DYD3_k127_433666_3	107636.JQNK01000009_gene3602	1.02e-70	259.0	COG2304@1|root,COG2931@1|root,COG2304@2|Bacteria,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,36ZVS@31993|Methylocystaceae	28211|Alphaproteobacteria	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	FG-GAP,HemolysinCabind,Integrin_beta
DYD3_k127_433666_9	388399.SSE37_22457	7.225e-06	49.0	COG3668@1|root,COG3668@2|Bacteria,1NC89@1224|Proteobacteria,2UHEP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Plasmid stabilization system	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_433666_8	1041146.ATZB01000004_gene6418	1.23e-20	94.0	COG3609@1|root,COG3609@2|Bacteria,1NCIN@1224|Proteobacteria,2UG1F@28211|Alphaproteobacteria,4BHDJ@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_433666_0	1207063.P24_10570	1.443e-193	619.0	COG0587@1|root,COG0587@2|Bacteria,1MUIF@1224|Proteobacteria,2TSCN@28211|Alphaproteobacteria,2JP92@204441|Rhodospirillales	204441|Rhodospirillales	L	DNA polymerase	dnaE	-	2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
DYD3_k127_4347897_4	215803.DB30_6589	8.231e-45	173.0	COG2339@1|root,COG2339@2|Bacteria,1PCW8@1224|Proteobacteria,4343U@68525|delta/epsilon subdivisions,2X52Q@28221|Deltaproteobacteria,2Z013@29|Myxococcales	28221|Deltaproteobacteria	S	Protease prsW family	-	-	-	-	-	-	-	-	-	-	-	-	PrsW-protease
DYD3_k127_4347897_1	1430440.MGMSRv2_0400	1.188e-147	477.0	COG0349@1|root,COG0349@2|Bacteria,1MURV@1224|Proteobacteria,2TSQM@28211|Alphaproteobacteria,2JP8M@204441|Rhodospirillales	204441|Rhodospirillales	J	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides	rnd	-	3.1.13.5	ko:K03684	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DNA_pol_A_exo1,HRDC
DYD3_k127_4347897_2	414684.RC1_2143	4.428e-138	449.0	COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2VG2H@28211|Alphaproteobacteria,2JZP7@204441|Rhodospirillales	204441|Rhodospirillales	P	Rieske [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
DYD3_k127_4347897_0	1122137.AQXF01000002_gene300	9.087e-292	906.0	COG0173@1|root,COG0173@2|Bacteria,1MUXB@1224|Proteobacteria,2TR9U@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)	aspS	-	6.1.1.12	ko:K01876	ko00970,map00970	M00359,M00360	R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	GAD,tRNA-synt_2,tRNA_anti-codon
DYD3_k127_4347897_3	366602.Caul_3332	2.666e-55	198.0	COG0625@1|root,COG0625@2|Bacteria,1RJVR@1224|Proteobacteria,2U5SU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_C_3,GST_N_3
DYD3_k127_4347897_5	314278.NB231_15253	1.425e-06	57.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,1RP3U@1236|Gammaproteobacteria,1WZUN@135613|Chromatiales	135613|Chromatiales	L	COG1961 Site-specific recombinases, DNA invertase Pin homologs	-	-	-	ko:K06400	-	-	-	-	ko00000	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_4351798_2	634499.EpC_25340	0.0004181	48.0	2CCYT@1|root,3493B@2|Bacteria,1NPPZ@1224|Proteobacteria,1SENU@1236|Gammaproteobacteria,3X6PP@551|Erwinia	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4351798_1	1121861.KB899911_gene1323	4.861e-91	312.0	COG3528@1|root,COG3528@2|Bacteria,1R601@1224|Proteobacteria,2U1IH@28211|Alphaproteobacteria,2JPW1@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF2219
DYD3_k127_4351798_0	1205680.CAKO01000002_gene2357	1.693e-265	825.0	COG1884@1|root,COG2185@1|root,COG1884@2|Bacteria,COG2185@2|Bacteria,1MUXX@1224|Proteobacteria,2TQYC@28211|Alphaproteobacteria,2JP9C@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly	icmF	-	5.4.99.2	ko:K01847	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	M00373,M00376,M00741	R00833	RC00395	ko00000,ko00001,ko00002,ko01000	-	-	-	ArgK,B12-binding,MM_CoA_mutase
DYD3_k127_4363317_8	1502851.FG93_00394	2.048e-18	86.0	COG0546@1|root,COG0546@2|Bacteria,1RB0Z@1224|Proteobacteria,2U5DF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	HAD-superfamily hydrolase subfamily IA, variant	gph	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
DYD3_k127_4363317_7	1121106.JQKB01000010_gene566	8.126e-22	105.0	COG2050@1|root,COG2050@2|Bacteria,1NA0B@1224|Proteobacteria,2UI6H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	PFAM thioesterase superfamily	MA20_21000	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_4363317_6	1121106.JQKB01000010_gene566	8.956e-32	130.0	COG2050@1|root,COG2050@2|Bacteria,1NA0B@1224|Proteobacteria,2UI6H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	PFAM thioesterase superfamily	MA20_21000	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_4363317_3	1280949.HAD_05580	1.899e-122	400.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2TQUY@28211|Alphaproteobacteria,440PV@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_4363317_1	1168059.KB899087_gene241	2.035e-136	446.0	COG3239@1|root,COG3239@2|Bacteria,1MUHK@1224|Proteobacteria,2TSTR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Fatty acid desaturase	-	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase
DYD3_k127_4363317_4	1168059.KB899087_gene242	1.917e-122	397.0	COG1082@1|root,COG1082@2|Bacteria,1R4JM@1224|Proteobacteria,2TREG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Xylose isomerase domain protein TIM barrel	-	-	-	-	-	-	-	-	-	-	-	-	AP_endonuc_2
DYD3_k127_4363317_0	568768.CM001975_gene1276	2.448e-280	867.0	COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,1RNA5@1236|Gammaproteobacteria,2JBY8@204037|Dickeya	1236|Gammaproteobacteria	C	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity	katG	GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748	1.11.1.21	ko:K03782	ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110	-	R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906	RC00034,RC00213,RC00767,RC02141	ko00000,ko00001,ko01000	-	-	iG2583_1286.G2583_4754	peroxidase
DYD3_k127_4363317_2	1395571.TMS3_0123865	7.411e-123	397.0	COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,1RNA5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity	katG	GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748	1.11.1.21	ko:K03782	ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110	-	R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906	RC00034,RC00213,RC00767,RC02141	ko00000,ko00001,ko01000	-	-	iG2583_1286.G2583_4754	peroxidase
DYD3_k127_4363317_5	648757.Rvan_2073	3.704e-95	316.0	COG1116@1|root,COG1116@2|Bacteria,1MUKI@1224|Proteobacteria,2TSP4@28211|Alphaproteobacteria,3N830@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system	ssuB	-	-	ko:K15555	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.17.2	-	-	ABC_tran
DYD3_k127_4375122_6	1123503.KB908056_gene1443	1.668e-67	233.0	COG0328@1|root,COG0328@2|Bacteria,1RCZ1@1224|Proteobacteria,2U7C4@28211|Alphaproteobacteria,2KGMX@204458|Caulobacterales	204458|Caulobacterales	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhA	-	3.1.26.4	ko:K03469	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	RNase_H
DYD3_k127_4375122_3	1380394.JADL01000002_gene1208	2.444e-132	428.0	COG2334@1|root,COG2334@2|Bacteria,1MUKJ@1224|Proteobacteria,2TS6D@28211|Alphaproteobacteria,2JQUH@204441|Rhodospirillales	204441|Rhodospirillales	F	Belongs to the pseudomonas-type ThrB family	thrB	-	2.7.1.39	ko:K02204	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	M00018	R01771	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	APH
DYD3_k127_4375122_2	1333998.M2A_1529	3.19e-139	450.0	COG0761@1|root,COG0761@2|Bacteria,1MU7G@1224|Proteobacteria,2TRNR@28211|Alphaproteobacteria,4BPJY@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	IM	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis	ispH	-	1.17.7.4	ko:K03527	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05884,R08210	RC01137,RC01487	ko00000,ko00001,ko00002,ko01000	-	-	-	LYTB
DYD3_k127_4375122_10	1123355.JHYO01000001_gene3195	1.126e-07	64.0	2E6A6@1|root,330Y2@2|Bacteria,1NB20@1224|Proteobacteria,2UGF9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4375122_5	509190.Cseg_3787	1.216e-97	327.0	COG1024@1|root,COG1024@2|Bacteria,1PJ4R@1224|Proteobacteria,2TSSU@28211|Alphaproteobacteria,2KFK9@204458|Caulobacterales	204458|Caulobacterales	I	PFAM Enoyl-CoA hydratase isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD3_k127_4375122_0	743836.AYNA01000010_gene1621	0.0	1319.0	COG0404@1|root,COG0665@1|root,COG0404@2|Bacteria,COG0665@2|Bacteria,1MUXJ@1224|Proteobacteria,2TRGS@28211|Alphaproteobacteria,36YMH@31993|Methylocystaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase central domain	Sardh	GO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006575,GO:0006576,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008480,GO:0009056,GO:0009063,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016491,GO:0016645,GO:0019695,GO:0019752,GO:0019842,GO:0031406,GO:0031974,GO:0033218,GO:0034641,GO:0035999,GO:0036094,GO:0042133,GO:0042135,GO:0042219,GO:0042402,GO:0042426,GO:0042558,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046483,GO:0046653,GO:0046997,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072341,GO:0097159,GO:0097164,GO:1901052,GO:1901053,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	1.5.3.19	ko:K19191	ko00760,ko01120,map00760,map01120	-	R10102	RC00060,RC00557	ko00000,ko00001,ko01000	-	-	-	DAO,FAO_M,GCV_T,GCV_T_C
DYD3_k127_4375122_4	743836.AYNA01000010_gene1622	3.014e-123	405.0	COG0510@1|root,COG0510@2|Bacteria,1MVBB@1224|Proteobacteria,2TT5Z@28211|Alphaproteobacteria,36ZW6@31993|Methylocystaceae	28211|Alphaproteobacteria	M	Choline/ethanolamine kinase	-	-	-	-	-	-	-	-	-	-	-	-	Choline_kinase
DYD3_k127_4375122_7	316056.RPC_0821	2.689e-43	160.0	COG2337@1|root,COG2337@2|Bacteria,1MZAV@1224|Proteobacteria,2UD15@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	growth inhibitor	-	-	-	ko:K07171	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PemK_toxin
DYD3_k127_4375122_8	690585.JNNU01000019_gene2035	3.271e-19	89.0	2BE8N@1|root,327ZP@2|Bacteria,1Q937@1224|Proteobacteria,2V58Q@28211|Alphaproteobacteria,4BH9K@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Protein  of unknown function (DUF3018)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3018
DYD3_k127_4375122_1	1333998.M2A_0195	1.106e-254	798.0	COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2TSCJ@28211|Alphaproteobacteria,4BREJ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)	leuA	-	2.3.3.13	ko:K01649	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	M00432	R01213	RC00004,RC00470,RC02754	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like,LeuA_dimer
DYD3_k127_4375122_9	1304877.KI519399_gene3078	2.354e-08	55.0	COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,2U2G6@28211|Alphaproteobacteria,3JVQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM transposase IS116 IS110 IS902 family	-	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110,Transposase_20
DYD3_k127_4375821_8	663610.JQKO01000010_gene2271	3.284e-116	381.0	COG3058@1|root,COG3058@2|Bacteria,1NK06@1224|Proteobacteria,2U11R@28211|Alphaproteobacteria,3NBCQ@45404|Beijerinckiaceae	28211|Alphaproteobacteria	O	Protein involved in formate dehydrogenase formation	fdhE	-	-	ko:K02380	-	-	-	-	ko00000	-	-	-	FdhE
DYD3_k127_4375821_7	663610.JQKO01000010_gene2270	4.913e-117	379.0	COG2864@1|root,COG2864@2|Bacteria,1MXFQ@1224|Proteobacteria,2TT30@28211|Alphaproteobacteria,3NAXD@45404|Beijerinckiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	ko:K00127	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001	-	-	-	Ni_hydr_CYTB
DYD3_k127_4375821_2	1353531.AZNX01000008_gene578	6.268e-173	548.0	COG0437@1|root,COG0437@2|Bacteria,1MU1B@1224|Proteobacteria,2TTE2@28211|Alphaproteobacteria,4BAMZ@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	4Fe-4S dicluster domain	fdxH	-	-	ko:K00124	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001	-	-	-	Fer4_11,Fer4_7,Form-deh_trans
DYD3_k127_4375821_0	1449065.JMLL01000016_gene3003	0.0	1500.0	COG0243@1|root,COG3383@1|root,COG0243@2|Bacteria,COG3383@2|Bacteria,1MW3N@1224|Proteobacteria,2TTPX@28211|Alphaproteobacteria,43HE1@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Molydopterin dinucleotide binding domain	fdhA1	-	1.17.1.9	ko:K00123	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	Molybdop_Fe4S4,Molybdopterin,Molydop_binding
DYD3_k127_4375821_9	663610.JQKO01000010_gene2267	1.043e-105	345.0	COG0243@1|root,COG0243@2|Bacteria,1MWPS@1224|Proteobacteria,2TVFQ@28211|Alphaproteobacteria,3NCAN@45404|Beijerinckiaceae	28211|Alphaproteobacteria	C	Molybdopterin oxidoreductase Fe4S4 domain	-	-	1.17.1.9	ko:K00123	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	Molybdop_Fe4S4,Molybdopterin,TAT_signal
DYD3_k127_4375821_4	639283.Snov_3502	1.523e-162	519.0	COG1305@1|root,COG1305@2|Bacteria,1MY5V@1224|Proteobacteria,2TU99@28211|Alphaproteobacteria,3EY4T@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Transglutaminase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	TAT_signal,Transglut_core
DYD3_k127_4375821_3	1336243.JAEA01000007_gene700	1.407e-169	540.0	COG0709@1|root,COG0709@2|Bacteria,1MWFG@1224|Proteobacteria,2TR91@28211|Alphaproteobacteria,1JRHP@119045|Methylobacteriaceae	28211|Alphaproteobacteria	H	Synthesizes selenophosphate from selenide and ATP	selD	-	2.7.9.3	ko:K01008	ko00450,ko01100,map00450,map01100	-	R03595	RC00002,RC02878	ko00000,ko00001,ko01000,ko03016	-	-	-	AIRS,AIRS_C,Pyr_redox_2
DYD3_k127_4375821_10	1125973.JNLC01000014_gene2390	2.138e-101	333.0	COG2085@1|root,COG2085@2|Bacteria,1MV62@1224|Proteobacteria,2TVDG@28211|Alphaproteobacteria,3JUPR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NADP oxidoreductase coenzyme F420-dependent	-	-	1.5.1.40	ko:K06988	-	-	-	-	ko00000,ko01000	-	-	-	F420_oxidored
DYD3_k127_4375821_6	1500257.JQNM01000005_gene2314	1.937e-118	384.0	COG1028@1|root,COG1028@2|Bacteria,1N4J7@1224|Proteobacteria,2TSDX@28211|Alphaproteobacteria,4B7MN@82115|Rhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_4375821_5	1502851.FG93_02241	2.855e-155	494.0	COG0583@1|root,COG0583@2|Bacteria,1MVD8@1224|Proteobacteria,2TT43@28211|Alphaproteobacteria,3JRV3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4375821_1	1125973.JNLC01000018_gene2202	1.387e-182	587.0	COG4663@1|root,COG4663@2|Bacteria,1MUXI@1224|Proteobacteria,2TQVW@28211|Alphaproteobacteria,3JWB9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Part of the tripartite ATP-independent periplasmic (TRAP) transport system	-	-	-	-	-	-	-	-	-	-	-	-	DctP,TAT_signal
DYD3_k127_4393125_4	1316936.K678_05768	3.463e-94	316.0	COG0846@1|root,COG0846@2|Bacteria,1MUK1@1224|Proteobacteria,2TV1Q@28211|Alphaproteobacteria,2JR75@204441|Rhodospirillales	204441|Rhodospirillales	K	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form	cobB	-	-	ko:K12410	-	-	-	-	ko00000,ko01000	-	-	-	SIR2
DYD3_k127_4393125_5	1089551.KE386572_gene3889	5.249e-86	301.0	COG0111@1|root,COG0111@2|Bacteria,1MW1U@1224|Proteobacteria,2TSUU@28211|Alphaproteobacteria,4BPZ3@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	EH	dehydrogenase and related dehydrogenases	-	-	1.1.1.79,1.1.1.81	ko:K12972	ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00260,map00620,map00630,map01100,map01110,map01120	-	R00465,R01388,R01392,R02527	RC00031,RC00042,RC00670	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh_C
DYD3_k127_4393125_10	1207063.P24_05682	3.833e-41	156.0	COG3824@1|root,COG3824@2|Bacteria,1N18M@1224|Proteobacteria,2UBUK@28211|Alphaproteobacteria,2JSPD@204441|Rhodospirillales	204441|Rhodospirillales	S	Zincin-like metallopeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Zincin_1
DYD3_k127_4393125_12	1238182.C882_3149	9.596e-38	145.0	COG2154@1|root,COG2154@2|Bacteria,1MZ5Q@1224|Proteobacteria,2UBWN@28211|Alphaproteobacteria,2JU2A@204441|Rhodospirillales	204441|Rhodospirillales	H	pterin-4-alpha-carbinolamine dehydratase	phhB	-	4.2.1.96	ko:K01724	ko00790,map00790	-	R04734	RC01208	ko00000,ko00001,ko01000,ko04147	-	-	-	Pterin_4a
DYD3_k127_4393125_13	713586.KB900536_gene2487	2.21e-26	118.0	COG2227@1|root,COG2227@2|Bacteria	2|Bacteria	H	3-demethylubiquinone-9 3-O-methyltransferase activity	-	-	2.1.1.222,2.1.1.64	ko:K00568,ko:K15257	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04988,R05614,R08769,R08781	RC00003,RC00392,RC01895	ko00000,ko00001,ko00002,ko01000,ko03016	-	-	-	Methyltransf_23,Methyltransf_31,Methyltransf_9
DYD3_k127_4393125_11	1206733.BAGC01000040_gene1395	5.192e-39	153.0	COG1309@1|root,COG1309@2|Bacteria,2IH6Y@201174|Actinobacteria,4G9AG@85025|Nocardiaceae	201174|Actinobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_4393125_2	1292034.OR37_02643	2.553e-169	542.0	2DBC5@1|root,2Z8BV@2|Bacteria,1QVGS@1224|Proteobacteria,2TS2Y@28211|Alphaproteobacteria,2KI1D@204458|Caulobacterales	204458|Caulobacterales	S	Uncharacterized protein conserved in bacteria (DUF2236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2236
DYD3_k127_4393125_3	883080.HMPREF9697_01647	7.139e-132	432.0	COG0477@1|root,COG2814@2|Bacteria,1MWFH@1224|Proteobacteria,2TR0R@28211|Alphaproteobacteria,3JVQA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	ynfM	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K08224	-	-	-	-	ko00000,ko02000	2.A.1.36	-	-	MFS_1,Sugar_tr
DYD3_k127_4393125_8	1523503.JPMY01000005_gene2009	8.487e-69	246.0	COG2207@1|root,COG2207@2|Bacteria,1R7G3@1224|Proteobacteria,1S1SV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_4393125_0	402881.Plav_0977	3.385e-178	572.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Flavoprotein involved in K transport	-	-	1.14.13.22	ko:K03379	ko00930,ko01120,ko01220,map00930,map01120,map01220	-	R02231,R06622	RC00662,RC01550	ko00000,ko00001,ko01000	-	-	-	FMO-like,Pyr_redox_3
DYD3_k127_4393125_7	1333998.M2A_0723	4.601e-74	260.0	COG0697@1|root,COG0697@2|Bacteria,1MZXM@1224|Proteobacteria,2U8WM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EG	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	-	-	-	ko:K15270	-	-	-	-	ko00000,ko02000	2.A.7.3.7	-	-	EamA
DYD3_k127_4393125_9	983917.RGE_46550	1.121e-49	187.0	COG0697@1|root,COG0697@2|Bacteria,1R46X@1224|Proteobacteria,2VNGN@28216|Betaproteobacteria,1KNKQ@119065|unclassified Burkholderiales	28216|Betaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_4393125_6	1550073.JROH01000009_gene1388	1.585e-79	277.0	COG2267@1|root,COG2267@2|Bacteria,1RATF@1224|Proteobacteria,2TTCT@28211|Alphaproteobacteria,2K1SM@204457|Sphingomonadales	204457|Sphingomonadales	I	Alpha beta hydrolase	-	-	-	ko:K18092	ko00642,ko01100,ko01120,ko01220,map00642,map01100,map01120,map01220	-	R05366	RC00752,RC00753	br01602,ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_4393125_1	1038859.AXAU01000013_gene6414	1.449e-175	556.0	COG1304@1|root,COG1304@2|Bacteria,1MUEZ@1224|Proteobacteria,2TQNW@28211|Alphaproteobacteria,3JSM5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FMN-dependent dehydrogenase	lldD	-	1.1.2.3	ko:K00101	ko00620,ko01100,map00620,map01100	-	R00196	RC00044	ko00000,ko00001,ko01000	-	-	-	FMN_dh
DYD3_k127_4400732_2	1336208.JADY01000005_gene1842	4.778e-100	329.0	COG0119@1|root,COG0119@2|Bacteria,1MUMX@1224|Proteobacteria,2TT1R@28211|Alphaproteobacteria,2JPU7@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0119 Isopropylmalate homocitrate citramalate synthases	-	-	4.1.3.4	ko:K01640	ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146	M00036,M00088	R01360,R08090	RC00502,RC00503,RC01118,RC01946	ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like
DYD3_k127_4400732_0	316058.RPB_0580	1.258e-286	889.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JSCZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	acsf	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4400732_3	1336208.JADY01000005_gene1837	1.743e-75	259.0	COG1309@1|root,COG1309@2|Bacteria,1R7JI@1224|Proteobacteria,2U0P5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_4,TetR_N
DYD3_k127_4400732_5	522306.CAP2UW1_3103	1.449e-43	168.0	COG4291@1|root,COG4291@2|Bacteria,1RGUF@1224|Proteobacteria,2VQ2N@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Protein of unknown function (DUF1345)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1345
DYD3_k127_4400732_4	1279009.ADICEAN_01038	5.063e-44	169.0	2BXI0@1|root,2Z9A2@2|Bacteria,4NFDQ@976|Bacteroidetes,47QAC@768503|Cytophagia	976|Bacteroidetes	S	Protein of unknown function (DUF2459)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2459
DYD3_k127_4400732_1	1089552.KI911559_gene445	1.37e-183	595.0	COG0744@1|root,COG0744@2|Bacteria,1QTST@1224|Proteobacteria,2TQQ8@28211|Alphaproteobacteria,2JQ4R@204441|Rhodospirillales	204441|Rhodospirillales	M	COG0744 Membrane carboxypeptidase (penicillin-binding protein)	-	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly,Transpeptidase
DYD3_k127_4410138_0	1121033.AUCF01000003_gene3310	5.743e-60	214.0	COG2912@1|root,COG2912@2|Bacteria,1MVJQ@1224|Proteobacteria,2U64D@28211|Alphaproteobacteria,2JRS0@204441|Rhodospirillales	204441|Rhodospirillales	S	Transglutaminase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	TPR_9,Transglut_core2
DYD3_k127_4410138_2	1122604.JONR01000040_gene4045	1.277e-17	94.0	COG2823@1|root,COG2823@2|Bacteria,1PCIJ@1224|Proteobacteria,1RRGP@1236|Gammaproteobacteria,1X845@135614|Xanthomonadales	135614|Xanthomonadales	S	bacterial OsmY and nodulation domain	-	-	-	ko:K04065	-	-	-	-	ko00000	-	-	-	BON
DYD3_k127_4410138_1	1121033.AUCF01000003_gene3309	3.039e-29	121.0	COG0792@1|root,COG0792@2|Bacteria,1N6VN@1224|Proteobacteria,2UFTM@28211|Alphaproteobacteria,2JU8R@204441|Rhodospirillales	204441|Rhodospirillales	L	Belongs to the UPF0102 family	-	-	-	ko:K07460	-	-	-	-	ko00000	-	-	-	UPF0102
DYD3_k127_4411606_1	1415780.JPOG01000001_gene746	3.783e-155	509.0	COG1053@1|root,COG1053@2|Bacteria,1MX84@1224|Proteobacteria,1RRR6@1236|Gammaproteobacteria,1X5GC@135614|Xanthomonadales	135614|Xanthomonadales	C	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_2
DYD3_k127_4411606_0	1415780.JPOG01000001_gene729	8.48e-185	597.0	COG1053@1|root,COG1053@2|Bacteria,1MURY@1224|Proteobacteria,1RNYN@1236|Gammaproteobacteria,1X5PM@135614|Xanthomonadales	135614|Xanthomonadales	C	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_2
DYD3_k127_4411606_4	1122604.JONR01000036_gene3797	1.429e-40	157.0	2ATA7@1|root,31IT8@2|Bacteria,1RJ8U@1224|Proteobacteria,1SFNX@1236|Gammaproteobacteria,1X8BT@135614|Xanthomonadales	135614|Xanthomonadales	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_4
DYD3_k127_4411606_2	402881.Plav_0555	8.383e-138	447.0	COG2267@1|root,COG2267@2|Bacteria,1QU7K@1224|Proteobacteria,2TW27@28211|Alphaproteobacteria,1JNZY@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	PFAM alpha beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_4411606_3	1116369.KB890024_gene2247	6.761e-87	294.0	COG1028@1|root,COG1028@2|Bacteria,1MVKN@1224|Proteobacteria,2TTMH@28211|Alphaproteobacteria,43PTC@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_4451941_2	537972.ABQU01000028_gene511	3.779e-07	53.0	COG0673@1|root,COG0673@2|Bacteria,1NKUI@1224|Proteobacteria	1224|Proteobacteria	S	oxidoreductase()	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_4451941_0	1207058.L53_01630	4.09e-68	236.0	COG0279@1|root,COG0279@2|Bacteria,1RCZS@1224|Proteobacteria,2TUZV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	SIS domain	-	-	5.3.1.28	ko:K03271	ko00540,ko01100,map00540,map01100	M00064	R05645,R09768,R09769	RC00434	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	SIS_2
DYD3_k127_4451941_1	742735.HMPREF9467_02970	7.487e-26	125.0	2DY7B@1|root,348GX@2|Bacteria	2|Bacteria	-	-	-	-	-	ko:K07266	-	-	-	-	ko00000	-	-	-	-
DYD3_k127_445844_17	1122603.ATVI01000006_gene409	4.199e-16	79.0	2DGRK@1|root,32U7S@2|Bacteria,1N22H@1224|Proteobacteria,1S6UD@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Phenol hydroxylase conserved region	dmpO	-	-	ko:K16245	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	Phenol_monoox
DYD3_k127_445844_0	1123261.AXDW01000021_gene868	7.826e-288	890.0	COG3350@1|root,COG3350@2|Bacteria,1MWWK@1224|Proteobacteria,1RMN1@1236|Gammaproteobacteria,1X9GH@135614|Xanthomonadales	135614|Xanthomonadales	S	Methane/Phenol/Toluene Hydroxylase	-	-	-	ko:K16242	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002,ko01000	-	-	-	Phenol_Hydrox,YHS
DYD3_k127_445844_12	420662.Mpe_A3307	2.519e-34	133.0	2CJVU@1|root,32S7J@2|Bacteria,1N03Q@1224|Proteobacteria,2VUNQ@28216|Betaproteobacteria,1KMKC@119065|unclassified Burkholderiales	28216|Betaproteobacteria	C	MmoB/DmpM family	-	-	-	ko:K16244	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	MmoB_DmpM
DYD3_k127_445844_7	1123257.AUFV01000003_gene1093	3.547e-139	456.0	2DB9W@1|root,2Z7Z9@2|Bacteria,1MZFV@1224|Proteobacteria,1RRZT@1236|Gammaproteobacteria,1X9CD@135614|Xanthomonadales	135614|Xanthomonadales	S	Methane/Phenol/Toluene Hydroxylase	-	-	-	ko:K16243	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	Phenol_Hydrox
DYD3_k127_445844_16	1458357.BG58_33945	1.287e-19	91.0	2C44J@1|root,333VN@2|Bacteria,1N6Q4@1224|Proteobacteria,2WIHK@28216|Betaproteobacteria,1K98A@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Phenol hydroxylase subunit	-	-	-	ko:K16249	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	Phenol_hyd_sub
DYD3_k127_445844_13	497321.C664_02525	1.076e-32	131.0	COG1942@1|root,COG1942@2|Bacteria,1N5SA@1224|Proteobacteria,2VW76@28216|Betaproteobacteria,2KXMN@206389|Rhodocyclales	206389|Rhodocyclales	S	protein, 4-oxalocrotonate tautomerase homolog	-	-	5.3.2.6	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R03966,R05389	RC01040,RC01355	ko00000,ko00001,ko00002,ko01000	-	-	-	Tautomerase
DYD3_k127_445844_11	62928.azo1859	5.786e-96	319.0	COG1028@1|root,COG1028@2|Bacteria,1R4D3@1224|Proteobacteria,2VMFK@28216|Betaproteobacteria,2KVBB@206389|Rhodocyclales	206389|Rhodocyclales	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_445844_4	62928.azo1858	2.449e-170	538.0	COG0346@1|root,COG0346@2|Bacteria,1MUWY@1224|Proteobacteria,2VKV3@28216|Betaproteobacteria,2KXWJ@206389|Rhodocyclales	206389|Rhodocyclales	H	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.2	ko:K00446	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
DYD3_k127_445844_3	1472716.KBK24_0120010	8.341e-176	563.0	COG0119@1|root,COG0119@2|Bacteria,1MVQG@1224|Proteobacteria,2VIXZ@28216|Betaproteobacteria,1K4J2@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta-cleavage pathway for the degradation of aromatic compounds	-	-	4.1.3.39	ko:K01666	ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R00750	RC00307,RC00371	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	DmpG_comm,HMGL-like
DYD3_k127_445844_6	1121035.AUCH01000001_gene1762	6.304e-159	504.0	COG4569@1|root,COG4569@2|Bacteria,1MV23@1224|Proteobacteria,2VMVU@28216|Betaproteobacteria,2KV1Q@206389|Rhodocyclales	206389|Rhodocyclales	Q	Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD( ) and coenzyme A. Is the final enzyme in the meta- cleavage pathway for the degradation of aromatic compounds	-	-	1.2.1.10,1.2.1.87	ko:K18366	ko00362,ko00620,ko00621,ko00622,ko00650,ko01100,ko01120,ko01220,map00362,map00620,map00621,map00622,map00650,map01100,map01120,map01220	M00569	R00228,R01172,R09097	RC00004,RC00184,RC01195	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	AcetDehyd-dimer,Semialdhyde_dh
DYD3_k127_445844_18	1123257.AUFV01000003_gene1105	5.541e-14	75.0	COG1942@1|root,COG1942@2|Bacteria,1PTA9@1224|Proteobacteria,1TEH1@1236|Gammaproteobacteria,1XBNR@135614|Xanthomonadales	135614|Xanthomonadales	S	Tautomerase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Tautomerase
DYD3_k127_445844_9	1123257.AUFV01000003_gene1104	1.175e-106	355.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,1RS6V@1236|Gammaproteobacteria,1X9S6@135614|Xanthomonadales	135614|Xanthomonadales	Q	4-Oxalocrotonate decarboxylase	-	-	4.1.1.77	ko:K01617	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R02602,R05374	RC00751,RC02672	ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_445844_8	1123367.C666_03875	8.875e-127	421.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2VH5E@28216|Betaproteobacteria	28216|Betaproteobacteria	Q	hydratase	-	-	4.2.1.132,4.2.1.80	ko:K18364	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R02601,R05864	RC00750,RC02676	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_445844_2	1123257.AUFV01000003_gene1102	9.232e-255	801.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X3DG@135614|Xanthomonadales	135614|Xanthomonadales	C	Belongs to the aldehyde dehydrogenase family	betB	GO:0003674,GO:0003824,GO:0004029,GO:0008150,GO:0008152,GO:0008802,GO:0016491,GO:0016620,GO:0016903,GO:0055114	1.2.1.32,1.2.1.60,1.2.1.8,1.2.1.85	ko:K00130,ko:K00151,ko:K10217	ko00260,ko00350,ko00362,ko00380,ko00622,ko01100,ko01120,ko01220,map00260,map00350,map00362,map00380,map00622,map01100,map01120,map01220	M00038,M00533,M00555,M00569	R02565,R02566,R02762,R03889,R04418,R05353	RC00080,RC00218,RC00254	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_445844_14	1123257.AUFV01000003_gene1101	1.807e-32	137.0	COG3193@1|root,COG3193@2|Bacteria,1RH9E@1224|Proteobacteria,1SD8A@1236|Gammaproteobacteria,1XBYG@135614|Xanthomonadales	135614|Xanthomonadales	S	Haem-degrading	-	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
DYD3_k127_445844_15	1488328.JMCL01000219_gene3062	1.827e-23	104.0	COG1018@1|root,COG1018@2|Bacteria,1NA1K@1224|Proteobacteria,1SCMJ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	2Fe-2S iron-sulfur cluster binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer2
DYD3_k127_445844_10	420662.Mpe_A0963	5.634e-105	351.0	COG4638@1|root,COG4638@2|Bacteria,1MV2G@1224|Proteobacteria,2VI96@28216|Betaproteobacteria,1KJTX@119065|unclassified Burkholderiales	28216|Betaproteobacteria	P	Rieske [2Fe-2S] domain	-	-	1.14.12.7,1.14.13.82	ko:K03862,ko:K18068	ko00624,ko00627,ko01100,ko01120,ko01220,map00624,map00627,map01100,map01120,map01220	M00623	R03630,R05274	RC00392,RC00951,RC01533	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske
DYD3_k127_445844_5	392499.Swit_3266	3.78e-160	514.0	COG4638@1|root,COG4638@2|Bacteria,1MV2G@1224|Proteobacteria,2U2T3@28211|Alphaproteobacteria,2K2Z3@204457|Sphingomonadales	204457|Sphingomonadales	P	Rieske [2Fe-2S] domain	-	-	1.14.15.23	ko:K22325	-	-	-	-	ko00000,ko01000	-	-	-	Rieske
DYD3_k127_445844_1	1000565.METUNv1_03701	3.295e-255	795.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,2VJ61@28216|Betaproteobacteria,2KUQ8@206389|Rhodocyclales	206389|Rhodocyclales	S	MMPL family	-	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
DYD3_k127_4475375_3	1279038.KB907337_gene565	2.059e-73	263.0	COG0743@1|root,COG0743@2|Bacteria,1MU4G@1224|Proteobacteria,2TSD1@28211|Alphaproteobacteria,2JQ6Y@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)	dxr	-	1.1.1.267	ko:K00099	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05688	RC01452	ko00000,ko00001,ko00002,ko01000	-	-	-	DXPR_C,DXP_redisom_C,DXP_reductoisom
DYD3_k127_4475375_4	402881.Plav_3191	7.382e-53	197.0	COG0575@1|root,COG0575@2|Bacteria,1MWSV@1224|Proteobacteria,2U9ED@28211|Alphaproteobacteria,1JP7U@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	Cytidylyltransferase family	cdsA	-	2.7.7.41	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	M00093	R01799	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_1
DYD3_k127_4475375_1	1244869.H261_06244	3.667e-94	316.0	COG0020@1|root,COG0020@2|Bacteria,1MVP1@1224|Proteobacteria,2TTVJ@28211|Alphaproteobacteria,2JPMI@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids	uppS	-	2.5.1.31	ko:K00806	ko00900,ko01110,map00900,map01110	-	R06447	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006	-	-	-	Prenyltransf
DYD3_k127_4475375_2	1122137.AQXF01000002_gene137	7.352e-79	269.0	COG0233@1|root,COG0233@2|Bacteria,1N66T@1224|Proteobacteria,2U5B2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another	frr	GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	ko:K02838	-	-	-	-	ko00000,ko03012	-	-	-	RRF
DYD3_k127_4475375_0	1333998.M2A_1039	1.177e-105	347.0	COG0528@1|root,COG0528@2|Bacteria,1MV3N@1224|Proteobacteria,2TQYN@28211|Alphaproteobacteria,4BPN5@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Catalyzes the reversible phosphorylation of UMP to UDP	pyrH	-	2.7.4.22	ko:K09903	ko00240,ko01100,map00240,map01100	-	R00158	RC00002	ko00000,ko00001,ko01000	-	-	-	AA_kinase
DYD3_k127_4514136_6	1340493.JNIF01000003_gene1343	1.2e-20	96.0	COG1538@1|root,COG1538@2|Bacteria,3Y4MP@57723|Acidobacteria	57723|Acidobacteria	MU	PFAM Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
DYD3_k127_4514136_2	1415780.JPOG01000001_gene666	2.734e-65	234.0	COG0300@1|root,COG0300@2|Bacteria,1RBH6@1224|Proteobacteria,1S7XU@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_4514136_3	83406.HDN1F_22610	6.133e-55	207.0	COG2207@1|root,COG2207@2|Bacteria,1MX23@1224|Proteobacteria,1RPJC@1236|Gammaproteobacteria,1JBVE@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_4514136_5	83406.HDN1F_21880	4.235e-23	113.0	COG3409@1|root,COG3409@2|Bacteria,1N63I@1224|Proteobacteria	1224|Proteobacteria	M	Papain-like cysteine protease AvrRpt2	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C70
DYD3_k127_4514136_0	1211115.ALIQ01000054_gene2793	7.734e-223	703.0	COG0433@1|root,COG0433@2|Bacteria,1MVA9@1224|Proteobacteria,2TTKA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ATP-binding protein'	MA20_00215	-	-	ko:K06915	-	-	-	-	ko00000	-	-	-	DUF87
DYD3_k127_4514136_1	1449044.JMLE01000011_gene3469	4.914e-151	484.0	COG0667@1|root,COG0667@2|Bacteria,2GJ4R@201174|Actinobacteria	201174|Actinobacteria	C	aldo keto reductase	-	-	1.1.1.65	ko:K05275	ko00750,ko01100,ko01120,map00750,map01100,map01120	-	R01708	RC00116	ko00000,ko00001,ko01000	-	-	-	Aldo_ket_red
DYD3_k127_4514136_4	485913.Krac_6787	3.896e-27	113.0	COG1309@1|root,COG1309@2|Bacteria,2G8K2@200795|Chloroflexi	200795|Chloroflexi	K	PFAM regulatory protein TetR	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_4516918_2	266779.Meso_2276	1.091e-54	196.0	COG0071@1|root,COG0071@2|Bacteria,1N7C7@1224|Proteobacteria,2UFRX@28211|Alphaproteobacteria,43K18@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	O	Belongs to the small heat shock protein (HSP20) family	-	-	-	ko:K13993	ko04141,map04141	-	-	-	ko00000,ko00001,ko03110	-	-	-	HSP20
DYD3_k127_4516918_1	395964.KE386496_gene2825	2.128e-214	680.0	COG1387@1|root,COG1387@2|Bacteria,1MYXV@1224|Proteobacteria,2TQS9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	DNA polymerase beta thumb	-	-	-	ko:K02347	-	-	-	-	ko00000,ko03400	-	-	-	DNA_pol_B_thumb,HHH_5,HHH_8,PHP
DYD3_k127_4516918_0	69279.BG36_14065	4.356e-257	809.0	COG1067@1|root,COG1067@2|Bacteria,1MWGB@1224|Proteobacteria,2TU7G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Belongs to the peptidase S16 family	-	-	-	-	-	-	-	-	-	-	-	-	AAA_32,Lon_C
DYD3_k127_4522455_2	1304877.KI519399_gene3078	1.51e-07	52.0	COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,2U2G6@28211|Alphaproteobacteria,3JVQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM transposase IS116 IS110 IS902 family	-	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110,Transposase_20
DYD3_k127_4522455_0	1205680.CAKO01000006_gene3280	7.229e-182	599.0	COG5373@1|root,COG5373@2|Bacteria,1N08V@1224|Proteobacteria,2TWNB@28211|Alphaproteobacteria,2JSRT@204441|Rhodospirillales	204441|Rhodospirillales	M	Predicted membrane protein (DUF2339)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2339
DYD3_k127_4522455_1	1502851.FG93_00098	3.631e-157	504.0	COG3128@1|root,COG3128@2|Bacteria,1MVVI@1224|Proteobacteria,2TRHC@28211|Alphaproteobacteria,3JX80@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Prolyl 4-hydroxylase alpha subunit homologues.	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy_3,AhpC-TSA
DYD3_k127_4533456_10	864069.MicloDRAFT_00013770	3.161e-113	383.0	COG0477@1|root,COG2814@2|Bacteria,1MWFH@1224|Proteobacteria,2TR0R@28211|Alphaproteobacteria,1JX0W@119045|Methylobacteriaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
DYD3_k127_4533456_20	663610.JQKO01000016_gene1589	2.732e-52	190.0	COG1917@1|root,COG1917@2|Bacteria,1PBNJ@1224|Proteobacteria,2U1VG@28211|Alphaproteobacteria,3NCHH@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
DYD3_k127_4533456_0	1380391.JIAS01000011_gene4717	8.936e-160	515.0	COG1252@1|root,COG1252@2|Bacteria,1MX96@1224|Proteobacteria,2TQT2@28211|Alphaproteobacteria,2JQWK@204441|Rhodospirillales	204441|Rhodospirillales	C	Pyridine nucleotide-disulphide oxidoreductase	-	-	1.6.99.3	ko:K03885	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD3_k127_4533456_11	420324.KI912069_gene6363	9.334e-104	345.0	COG0583@1|root,COG0583@2|Bacteria,1R51E@1224|Proteobacteria,2TZIK@28211|Alphaproteobacteria,1JXVG@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	PFAM Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4533456_9	864069.MicloDRAFT_00013750	1.134e-116	382.0	COG0583@1|root,COG0583@2|Bacteria,1R51E@1224|Proteobacteria,2TZIK@28211|Alphaproteobacteria,1JXVG@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	PFAM Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4533456_8	1038859.AXAU01000003_gene5955	5.028e-117	383.0	COG1028@1|root,COG1028@2|Bacteria,1MU5Y@1224|Proteobacteria,2TRNQ@28211|Alphaproteobacteria,3JXIW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	1.1.1.30	ko:K00019	ko00072,ko00650,ko01100,map00072,map00650,map01100	M00088	R01361	RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short,adh_short_C2
DYD3_k127_4533456_3	395963.Bind_1734	8.911e-148	478.0	COG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	esterase of the alpha-beta hydrolase superfamily	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin
DYD3_k127_4533456_7	231434.JQJH01000025_gene3279	3.034e-117	387.0	COG0604@1|root,COG0604@2|Bacteria,1MWBD@1224|Proteobacteria,2TS3Z@28211|Alphaproteobacteria,3N9S1@45404|Beijerinckiaceae	28211|Alphaproteobacteria	C	PFAM Alcohol dehydrogenase zinc-binding domain protein	-	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_4533456_18	266834.SM_b21289	7.718e-62	215.0	COG1733@1|root,COG1733@2|Bacteria,1MZ6G@1224|Proteobacteria,2UEGN@28211|Alphaproteobacteria,4BERW@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_4533456_6	378806.STAUR_1450	2.205e-121	396.0	COG0583@1|root,COG0583@2|Bacteria,1MUNN@1224|Proteobacteria,4394J@68525|delta/epsilon subdivisions,2X4AN@28221|Deltaproteobacteria,2YYMH@29|Myxococcales	28221|Deltaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4533456_4	1131814.JAFO01000001_gene2143	3.059e-147	479.0	COG0596@1|root,COG0596@2|Bacteria,1MUSF@1224|Proteobacteria,2TSK5@28211|Alphaproteobacteria,3F1GS@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	alpha/beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_4533456_2	78245.Xaut_0974	1.27e-151	486.0	COG1409@1|root,COG1409@2|Bacteria,1MUQJ@1224|Proteobacteria,2TTSK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
DYD3_k127_4533456_22	59538.XP_005959409.1	1.428e-26	114.0	2D5QT@1|root,2SZBI@2759|Eukaryota,3ASSH@33154|Opisthokonta	33154|Opisthokonta	T	Cupredoxin-like domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4533456_19	460265.Mnod_0786	1.292e-59	214.0	COG1595@1|root,COG1595@2|Bacteria,1NRNT@1224|Proteobacteria,2TT5K@28211|Alphaproteobacteria,1JVJ8@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	TIGRFAM RNA polymerase sigma factor, sigma-70 family	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_4533456_14	78245.Xaut_0977	1.029e-84	293.0	COG5662@1|root,COG5662@2|Bacteria,1MV95@1224|Proteobacteria,2TVRG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	AntiSigma factor	-	-	-	-	-	-	-	-	-	-	-	-	zf-HC2
DYD3_k127_4533456_25	316057.RPD_0923	6.529e-09	63.0	COG3038@1|root,COG3038@2|Bacteria,1MWQJ@1224|Proteobacteria,2U6HC@28211|Alphaproteobacteria,3JYDV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K12262	-	-	-	-	ko00000	-	-	-	Ni_hydr_CYTB
DYD3_k127_4533456_5	95619.PM1_0224615	3.336e-130	419.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,1RMF7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	O	Belongs to the GST superfamily	yfcG	GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0015036,GO:0016491,GO:0016667,GO:0050896,GO:0055114	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_N,GST_N_3
DYD3_k127_4533456_15	1215092.PA6_061_00060	9.845e-73	252.0	COG1309@1|root,COG1309@2|Bacteria,1NCEF@1224|Proteobacteria,1RQ8N@1236|Gammaproteobacteria,1YH55@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_13,TetR_N
DYD3_k127_4533456_23	717785.HYPMC_4839	1.477e-13	76.0	2C39R@1|root,32UYY@2|Bacteria,1N8ND@1224|Proteobacteria,2UFIK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4533456_17	329726.AM1_4173	5.047e-70	245.0	COG1225@1|root,COG1225@2|Bacteria,1G3WF@1117|Cyanobacteria	1117|Cyanobacteria	O	PFAM AhpC TSA family	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA
DYD3_k127_4533456_21	1410620.SHLA_47c000430	2.132e-32	133.0	COG0526@1|root,COG0526@2|Bacteria,1MZQJ@1224|Proteobacteria,2UBRX@28211|Alphaproteobacteria,4BG39@82115|Rhizobiaceae	28211|Alphaproteobacteria	CO	Thioredoxin	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin
DYD3_k127_4533456_12	1101192.KB910516_gene3786	6.397e-91	306.0	COG0785@1|root,COG0785@2|Bacteria,1MVV0@1224|Proteobacteria,2TUNG@28211|Alphaproteobacteria,1JQRY@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	PFAM cytochrome c biogenesis protein transmembrane region	-	-	-	-	-	-	-	-	-	-	-	-	DsbD
DYD3_k127_4533456_16	296591.Bpro_0509	1.191e-71	243.0	COG1942@1|root,COG1942@2|Bacteria,1RHA5@1224|Proteobacteria,2VRNS@28216|Betaproteobacteria,4AEF1@80864|Comamonadaceae	28216|Betaproteobacteria	S	Tautomerase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Tautomerase_2
DYD3_k127_4533456_1	296591.Bpro_0510	7.653e-157	497.0	COG0583@1|root,COG0583@2|Bacteria,1MVKF@1224|Proteobacteria,2VIHQ@28216|Betaproteobacteria,4ACVY@80864|Comamonadaceae	28216|Betaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4533456_13	1174684.EBMC1_08561	9.216e-91	306.0	COG2249@1|root,COG2249@2|Bacteria,1MUHN@1224|Proteobacteria,2U15Z@28211|Alphaproteobacteria,2K63S@204457|Sphingomonadales	204457|Sphingomonadales	S	Flavodoxin-like fold	-	-	1.6.5.2	ko:K00355	ko00130,ko01110,ko05200,ko05225,ko05418,map00130,map01110,map05200,map05225,map05418	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	Flavodoxin_2
DYD3_k127_4533456_24	448385.sce0923	2.753e-10	61.0	COG1011@1|root,COG1011@2|Bacteria,1MVWN@1224|Proteobacteria,43DWE@68525|delta/epsilon subdivisions,2WZ1W@28221|Deltaproteobacteria,2Z153@29|Myxococcales	28221|Deltaproteobacteria	S	Haloacid dehalogenase-like hydrolase	-	-	3.8.1.2	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05287	RC00697	ko00000,ko00001,ko01000	-	-	-	HAD_2
DYD3_k127_4542846_1	639283.Snov_2168	5.74e-151	490.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2TSNH@28211|Alphaproteobacteria,3EY55@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_04105	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_4542846_8	1144343.PMI41_00514	8.807e-52	192.0	COG3795@1|root,COG3795@2|Bacteria,1RJIJ@1224|Proteobacteria,2U967@28211|Alphaproteobacteria,43QU2@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	YCII-related domain	MA20_04110	-	-	-	-	-	-	-	-	-	-	-	YCII
DYD3_k127_4542846_0	1292034.OR37_03682	2.692e-228	720.0	COG2072@1|root,COG2072@2|Bacteria,1MU71@1224|Proteobacteria,2TV2E@28211|Alphaproteobacteria,2KG5Q@204458|Caulobacterales	204458|Caulobacterales	P	Flavin-binding monooxygenase-like	-	-	-	-	-	-	-	-	-	-	-	-	FMO-like,NAD_binding_8
DYD3_k127_4542846_3	1177928.TH2_04503	1.442e-105	365.0	COG0741@1|root,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2U35U@28211|Alphaproteobacteria,2JQXV@204441|Rhodospirillales	204441|Rhodospirillales	M	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	-	-	-	-	-	-	-	-	-	-	-	-	SLT
DYD3_k127_4542846_7	331869.BAL199_10902	8.085e-76	262.0	COG0521@1|root,COG0521@2|Bacteria,1R9W2@1224|Proteobacteria,2TTA8@28211|Alphaproteobacteria,4BQ70@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	May be involved in the biosynthesis of molybdopterin	moaB	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464	2.7.7.75	ko:K03638	ko00790,ko01100,map00790,map01100	-	R09726	RC00002	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth
DYD3_k127_4542846_5	63737.Npun_F1600	3.2e-91	332.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1G09B@1117|Cyanobacteria,1HJGC@1161|Nostocales	1117|Cyanobacteria	T	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	-	-	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	HAMP,HATPase_c,HisKA,Response_reg,dCache_1
DYD3_k127_4542846_6	1502851.FG93_03909	3.304e-82	279.0	COG0220@1|root,COG0220@2|Bacteria,1QTX5@1224|Proteobacteria,2TWA0@28211|Alphaproteobacteria,3K6SX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Protein of unknown function (DUF938)	-	-	-	-	-	-	-	-	-	-	-	-	DUF938
DYD3_k127_4542846_10	76114.ebA3954	3.718e-07	58.0	COG1414@1|root,COG1414@2|Bacteria,1NMZV@1224|Proteobacteria,2VYEZ@28216|Betaproteobacteria,2KYSE@206389|Rhodocyclales	206389|Rhodocyclales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4542846_11	497321.C664_18624	9.18e-06	54.0	COG1414@1|root,COG1414@2|Bacteria,1NMZV@1224|Proteobacteria,2VYEZ@28216|Betaproteobacteria,2KYSE@206389|Rhodocyclales	206389|Rhodocyclales	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4542846_2	1449049.JONW01000008_gene487	1.402e-117	396.0	COG0642@1|root,COG2205@2|Bacteria,1NN66@1224|Proteobacteria,2TVIV@28211|Alphaproteobacteria,2KFCJ@204458|Caulobacterales	204458|Caulobacterales	T	Domain of unknown function (DUF4173)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4173
DYD3_k127_4542846_4	1123269.NX02_26515	7.218e-102	339.0	COG0745@1|root,COG0745@2|Bacteria,1MVCB@1224|Proteobacteria,2TVHH@28211|Alphaproteobacteria,2K1US@204457|Sphingomonadales	204457|Sphingomonadales	T	Transcriptional regulatory protein, C terminal	-	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_4542846_9	1120792.JAFV01000001_gene2279	3.847e-19	98.0	COG0642@1|root,COG2205@2|Bacteria,1NFY3@1224|Proteobacteria,2TSQR@28211|Alphaproteobacteria,370EC@31993|Methylocystaceae	28211|Alphaproteobacteria	T	HAMP domain	MA20_06300	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
DYD3_k127_4560181_2	1038858.AXBA01000029_gene718	6.038e-18	85.0	COG1607@1|root,COG1607@2|Bacteria,1MZAZ@1224|Proteobacteria,2U93J@28211|Alphaproteobacteria,3F1JB@335928|Xanthobacteraceae	28211|Alphaproteobacteria	I	Thioesterase superfamily	yciA	-	-	ko:K10806	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	4HBT
DYD3_k127_4560181_1	1500894.JQNN01000001_gene704	2.785e-51	186.0	COG3193@1|root,COG3193@2|Bacteria,1RGUD@1224|Proteobacteria,2VRBU@28216|Betaproteobacteria,474E6@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Haem-degrading	glcG	-	-	ko:K11477	-	-	-	-	ko00000	-	-	-	Haem_degrading
DYD3_k127_4560181_0	1265502.KB905937_gene2597	0.0	1037.0	COG2225@1|root,COG2225@2|Bacteria,1MVEV@1224|Proteobacteria,2VJMS@28216|Betaproteobacteria,4AB06@80864|Comamonadaceae	28216|Betaproteobacteria	H	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA	glcB	-	2.3.3.9	ko:K01638	ko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200	M00012	R00472	RC00004,RC00308,RC02747	ko00000,ko00001,ko00002,ko01000	-	-	-	Malate_synthase
DYD3_k127_4565863_3	1245469.S58_18590	2.687e-35	137.0	COG0840@1|root,COG2202@1|root,COG0840@2|Bacteria,COG2202@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSRS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	methyl-accepting chemotaxis	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal,PAS_3,PAS_4,PAS_9
DYD3_k127_4565863_2	1122962.AULH01000015_gene871	1.605e-111	392.0	COG1509@1|root,COG1509@2|Bacteria,1MUPJ@1224|Proteobacteria,2TT31@28211|Alphaproteobacteria,36YN5@31993|Methylocystaceae	28211|Alphaproteobacteria	E	4Fe-4S single cluster domain	kamA	-	5.4.3.2	ko:K01843	ko00310,map00310	-	R00461	RC00303	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Fer4_14,LAM_C,Radical_SAM
DYD3_k127_4565863_0	1125973.JNLC01000010_gene1965	4.225e-200	642.0	COG0687@1|root,COG0687@2|Bacteria,1NKD7@1224|Proteobacteria,2TYST@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Extracellular solute-binding protein	ydcS	GO:0005575,GO:0005623,GO:0006810,GO:0008150,GO:0008152,GO:0009058,GO:0009290,GO:0009292,GO:0009294,GO:0009987,GO:0015931,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0042618,GO:0042619,GO:0044464,GO:0044764,GO:0050657,GO:0051027,GO:0051179,GO:0051234,GO:0051704,GO:0071702,GO:0071704,GO:0071705,GO:0098657,GO:1901440,GO:1901441,GO:1901576	-	ko:K02055	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	SBP_bac_8
DYD3_k127_4565863_1	1168059.KB899087_gene2423	2.871e-130	424.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,3F1BY@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	TOBE domain	ydcT	-	-	ko:K02052	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	ABC_tran,TOBE_2
DYD3_k127_4572235_3	760117.JN27_19455	5.47e-58	208.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2VH8J@28216|Betaproteobacteria,472ZK@75682|Oxalobacteraceae	28216|Betaproteobacteria	P	heavy metal translocating P-type ATPase	copA	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,HMA,Hydrolase
DYD3_k127_4572235_5	323261.Noc_0204	7.582e-10	64.0	COG2608@1|root,COG2608@2|Bacteria	2|Bacteria	P	mercury ion transmembrane transporter activity	-	-	-	ko:K07213	ko04978,map04978	-	-	-	ko00000,ko00001	-	-	-	HMA
DYD3_k127_4572235_1	1333998.M2A_2179	1.215e-192	608.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TQRA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_04655	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_4572235_4	1380394.JADL01000002_gene1751	6.624e-56	213.0	COG2324@1|root,COG2324@2|Bacteria,1RA24@1224|Proteobacteria,2U67T@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Carotenoid biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Caroten_synth
DYD3_k127_4572235_2	1280949.HAD_14682	9.049e-73	253.0	COG1028@1|root,COG1028@2|Bacteria,1MUFX@1224|Proteobacteria,2TRWN@28211|Alphaproteobacteria,43XCC@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	short chain dehydrogenase reductase family	-	-	1.1.1.304,1.1.1.76	ko:K18009	ko00650,map00650	-	R03707,R09078,R10505	RC00205,RC00525	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
DYD3_k127_4572235_0	402881.Plav_0609	9.05e-199	625.0	COG1960@1|root,COG1960@2|Bacteria,1R5WI@1224|Proteobacteria,2U4FE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_4578591_3	246200.SPO0116	9.204e-26	116.0	COG0282@1|root,COG0282@2|Bacteria,1MW61@1224|Proteobacteria,2TQQQ@28211|Alphaproteobacteria,4NADE@97050|Ruegeria	28211|Alphaproteobacteria	H	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction	ackA	-	2.7.2.1	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	M00357,M00579	R00315,R01353	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	Acetate_kinase
DYD3_k127_4578591_0	349163.Acry_3031	1.891e-153	497.0	COG0280@1|root,COG2030@1|root,COG0280@2|Bacteria,COG2030@2|Bacteria,1MWPK@1224|Proteobacteria,2TWCZ@28211|Alphaproteobacteria,2JYV3@204441|Rhodospirillales	204441|Rhodospirillales	CI	phosphate acetyltransferase	-	-	2.3.1.19,2.3.1.8	ko:K00625,ko:K00634	ko00430,ko00620,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00650,map00680,map00720,map01100,map01120,map01200	M00357,M00579	R00230,R00921,R01174	RC00004,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000	-	-	-	MaoC_dehydratas,PTA_PTB
DYD3_k127_4578591_1	1123257.AUFV01000008_gene767	1.144e-105	355.0	COG1028@1|root,COG1028@2|Bacteria,1RFE6@1224|Proteobacteria,1S55Y@1236|Gammaproteobacteria,1XCDJ@135614|Xanthomonadales	135614|Xanthomonadales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_4578591_2	190650.CC_0816	4.317e-47	172.0	COG0454@1|root,COG0456@2|Bacteria,1RB0Q@1224|Proteobacteria,2U6TH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	-acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD3_k127_4601076_7	1282876.BAOK01000001_gene1938	0.0001136	53.0	COG2885@1|root,COG2885@2|Bacteria,1N2EI@1224|Proteobacteria,2UD4D@28211|Alphaproteobacteria,4BSXR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	OmpA family	-	-	-	-	-	-	-	-	-	-	-	-	OmpA
DYD3_k127_4601076_0	1238182.C882_1810	7.94e-205	644.0	COG0436@1|root,COG0436@2|Bacteria,1MWS8@1224|Proteobacteria,2TRE3@28211|Alphaproteobacteria,2JPZZ@204441|Rhodospirillales	204441|Rhodospirillales	E	Aminotransferase	-	-	-	ko:K14261	-	-	-	-	ko00000,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_4601076_1	1217720.ALOX01000088_gene3088	8.615e-157	515.0	COG0460@1|root,COG0460@2|Bacteria,1MUDC@1224|Proteobacteria,2TQWS@28211|Alphaproteobacteria,2JPAR@204441|Rhodospirillales	204441|Rhodospirillales	E	homoserine dehydrogenase	hom	-	1.1.1.3	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	M00017,M00018	R01773,R01775	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,Homoserine_dh,NAD_binding_3
DYD3_k127_4601076_3	1219049.SP5_091_00030	4.869e-140	452.0	COG1494@1|root,COG1494@2|Bacteria,1MUB1@1224|Proteobacteria,2TSPE@28211|Alphaproteobacteria,2JZUH@204457|Sphingomonadales	204457|Sphingomonadales	G	in Escherichia coli this protein forms a dimer and binds manganese	glpX	-	3.1.3.11,3.1.3.37	ko:K11532	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00165,M00167	R00762,R01845,R04780	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FBPase_glpX
DYD3_k127_4601076_2	640081.Dsui_2802	6.577e-152	490.0	COG2081@1|root,COG2081@2|Bacteria,1MUGC@1224|Proteobacteria,2VIGJ@28216|Betaproteobacteria,2KVP2@206389|Rhodocyclales	206389|Rhodocyclales	S	HI0933-like protein	-	-	-	ko:K07007	-	-	-	-	ko00000	-	-	-	HI0933_like
DYD3_k127_4601076_4	1380391.JIAS01000001_gene2839	1.763e-78	294.0	COG1287@1|root,COG1287@2|Bacteria,1Q7NF@1224|Proteobacteria,2VDTS@28211|Alphaproteobacteria,2JYAM@204441|Rhodospirillales	204441|Rhodospirillales	S	oligosaccharyl transferase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4601076_5	314232.SKA53_12273	4.977e-59	210.0	COG0500@1|root,COG2226@2|Bacteria,1RFR5@1224|Proteobacteria,2U7RB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Methionine biosynthesis protein MetW	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_4601076_6	936136.ARRT01000006_gene5929	4.705e-08	55.0	COG3847@1|root,COG3847@2|Bacteria,1NGVU@1224|Proteobacteria,2UJE8@28211|Alphaproteobacteria,4BGUV@82115|Rhizobiaceae	28211|Alphaproteobacteria	U	Flp pilus assembly protein, pilin Flp	pilA	-	-	ko:K02651	ko04112,map04112	-	-	-	ko00000,ko00001,ko02035,ko02044	-	-	-	Flp_Fap
DYD3_k127_4602761_0	1380394.JADL01000003_gene4987	3.031e-303	942.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TQJR@28211|Alphaproteobacteria,2JQA5@204441|Rhodospirillales	204441|Rhodospirillales	I	COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases	-	-	6.2.1.17	ko:K01908	ko00640,ko01100,map00640,map01100	-	R00926,R01354	RC00004,RC00043,RC00070,RC02816	ko00000,ko00001,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
DYD3_k127_4602761_2	1380394.JADL01000011_gene3828	8.356e-124	411.0	COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2TS80@28211|Alphaproteobacteria,2JR07@204441|Rhodospirillales	204441|Rhodospirillales	S	Transporter associated domain	-	-	-	ko:K03699	-	-	-	-	ko00000,ko02042	-	-	-	CBS,CorC_HlyC,DUF21
DYD3_k127_4602761_3	1380391.JIAS01000001_gene2780	3.397e-65	229.0	COG0861@1|root,COG0861@2|Bacteria,1PN8B@1224|Proteobacteria,2TUV5@28211|Alphaproteobacteria,2JZMA@204441|Rhodospirillales	204441|Rhodospirillales	P	Integral membrane protein TerC family	-	-	-	-	-	-	-	-	-	-	-	-	TerC
DYD3_k127_4602761_1	402881.Plav_2083	3.86e-208	656.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,1JNGP@119043|Rhodobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_29420	-	6.2.1.44,6.2.1.48	ko:K00666,ko:K02182,ko:K20034	ko00920,map00920	-	R10820	RC00004,RC00014	ko00000,ko00001,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4605618_6	983920.Y88_3303	4.431e-56	200.0	COG0583@1|root,COG0583@2|Bacteria,1MU8N@1224|Proteobacteria,2TUQK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4605618_2	983920.Y88_3304	1.133e-175	558.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	L-carnitine dehydratase bile acid-inducible protein F	-	-	2.8.3.19	ko:K18702	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
DYD3_k127_4605618_3	983920.Y88_3305	4.546e-171	545.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	-	-	1.3.8.1	ko:K00248	ko00071,ko00280,ko00650,ko01100,ko01110,ko01120,ko01200,ko01212,map00071,map00280,map00650,map01100,map01110,map01120,map01200,map01212	-	R01175,R01178,R02661,R03172,R04751	RC00052,RC00068,RC00076,RC00120,RC00148	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_4605618_1	1121106.JQKB01000070_gene838	8.52e-184	584.0	COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,2TR26@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
DYD3_k127_4605618_4	1192868.CAIU01000033_gene4084	6.736e-170	551.0	COG0747@1|root,COG0747@2|Bacteria,1MUPE@1224|Proteobacteria,2TS4U@28211|Alphaproteobacteria,43J18@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	COG0747 ABC-type dipeptide transport system, periplasmic component	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_5
DYD3_k127_4605618_7	1041146.ATZB01000007_gene2941	5.739e-31	130.0	COG3758@1|root,COG3758@2|Bacteria,1RH9G@1224|Proteobacteria,2U9WU@28211|Alphaproteobacteria,4BE3K@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	ko:K09975	-	-	-	-	ko00000	-	-	-	HutD
DYD3_k127_4605618_0	690585.JNNU01000010_gene944	0.0	1034.0	COG2987@1|root,COG2987@2|Bacteria,1MU4W@1224|Proteobacteria,2TSJR@28211|Alphaproteobacteria,4B6YB@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate	hutU	-	4.2.1.49	ko:K01712	ko00340,ko01100,map00340,map01100	M00045	R02914	RC00804	ko00000,ko00001,ko00002,ko01000	-	-	-	Urocanase,Urocanase_C,Urocanase_N
DYD3_k127_4605618_5	195105.CN97_09175	3.964e-117	381.0	COG3741@1|root,COG3741@2|Bacteria,1MY4D@1224|Proteobacteria,2TSC3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	N-formylglutamate amidohydrolase	hutG	-	3.5.3.8	ko:K01479	ko00340,ko01100,map00340,map01100	M00045	R02285	RC00221,RC00681	ko00000,ko00001,ko00002,ko01000	-	-	-	FGase
DYD3_k127_460596_3	235985.BBPN01000012_gene6909	8.985e-06	56.0	COG2203@1|root,COG2203@2|Bacteria,2I97I@201174|Actinobacteria,2NJK0@228398|Streptacidiphilus	201174|Actinobacteria	T	Domain present in phytochromes and cGMP-specific phosphodiesterases.	-	-	-	-	-	-	-	-	-	-	-	-	GAF_2
DYD3_k127_460596_2	862751.SACTE_2227	1.164e-34	142.0	COG1404@1|root,COG1404@2|Bacteria	2|Bacteria	O	Belongs to the peptidase S8 family	-	-	-	ko:K14645	ko02024,map02024	-	-	-	ko00000,ko00001,ko01000,ko01002,ko03110	-	-	-	Peptidase_S8,TIG
DYD3_k127_460596_1	472175.EL18_02533	2.396e-37	162.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,43IIC@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	ABC-type multidrug transport system ATPase and permease	msbA	-	-	ko:K06147,ko:K11085	ko02010,map02010	-	-	-	ko00000,ko00001,ko01000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_460596_0	1123355.JHYO01000025_gene2133	2.157e-54	200.0	COG0664@1|root,COG0664@2|Bacteria,1MXID@1224|Proteobacteria,2U1G1@28211|Alphaproteobacteria,36Z2B@31993|Methylocystaceae	28211|Alphaproteobacteria	T	Crp-like helix-turn-helix domain	-	-	-	ko:K10914	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_4675398_1	78245.Xaut_3960	1.09e-163	520.0	COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,2TU32@28211|Alphaproteobacteria,3EZ14@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	gap3	-	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
DYD3_k127_4675398_2	1150626.PHAMO_210219	3.548e-108	366.0	COG5002@1|root,COG5002@2|Bacteria,1MWF3@1224|Proteobacteria,2TR46@28211|Alphaproteobacteria,2JQBI@204441|Rhodospirillales	204441|Rhodospirillales	T	signal transduction histidine kinase	phoR	-	2.7.13.3	ko:K07636	ko02020,map02020	M00434	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS_4,PAS_8
DYD3_k127_4675398_0	1207063.P24_02901	3.432e-187	594.0	COG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,2JQEQ@204441|Rhodospirillales	204441|Rhodospirillales	C	malic enzyme	tme	-	1.1.1.40	ko:K00029	ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200	M00169,M00172	R00216	RC00105	ko00000,ko00001,ko00002,ko01000	-	-	-	Malic_M,PTA_PTB,malic
DYD3_k127_4685527_5	1304877.KI519399_gene3078	4.338e-19	87.0	COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,2U2G6@28211|Alphaproteobacteria,3JVQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM transposase IS116 IS110 IS902 family	-	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110,Transposase_20
DYD3_k127_4685527_4	1110502.TMO_1826	3.289e-58	206.0	COG0698@1|root,COG0698@2|Bacteria,1RHBF@1224|Proteobacteria,2U94R@28211|Alphaproteobacteria,2JSQU@204441|Rhodospirillales	204441|Rhodospirillales	G	COG0698 Ribose 5-phosphate isomerase RpiB	ywlF	-	5.3.1.6	ko:K01808	ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01056,R09030	RC00376,RC00434	ko00000,ko00001,ko00002,ko01000	-	-	-	LacAB_rpiB
DYD3_k127_4685527_0	1502851.FG93_04772	6.064e-215	675.0	COG0112@1|root,COG0112@2|Bacteria,1MUIS@1224|Proteobacteria,2TQKT@28211|Alphaproteobacteria,3JTRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism	glyA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.1.2.1	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	M00140,M00141,M00346,M00532	R00945,R09099	RC00022,RC00112,RC01583,RC02958	ko00000,ko00001,ko00002,ko01000	-	-	-	SHMT
DYD3_k127_4685527_3	402881.Plav_2909	3.044e-69	251.0	COG1327@1|root,COG1327@2|Bacteria,1RE7V@1224|Proteobacteria,2U75W@28211|Alphaproteobacteria,1JNXW@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	nrdR	-	-	ko:K07738	-	-	-	-	ko00000,ko03000	-	-	-	ATP-cone
DYD3_k127_4685527_1	1316936.K678_05186	1.793e-142	462.0	COG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,1MUWT@1224|Proteobacteria,2TR70@28211|Alphaproteobacteria,2JPG9@204441|Rhodospirillales	204441|Rhodospirillales	H	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate	ribD	-	1.1.1.193,3.5.4.26	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	RibD_C,dCMP_cyt_deam_1
DYD3_k127_4685527_2	1121033.AUCF01000018_gene5833	3.23e-73	251.0	COG0307@1|root,COG0307@2|Bacteria,1MUMB@1224|Proteobacteria,2U3RS@28211|Alphaproteobacteria,2JR8K@204441|Rhodospirillales	204441|Rhodospirillales	H	Riboflavin synthase alpha chain	ribE	-	2.5.1.9	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00066	RC00958,RC00960	ko00000,ko00001,ko00002,ko01000	-	-	-	Lum_binding
DYD3_k127_4688181_1	1123240.ATVO01000007_gene2290	1.73e-56	200.0	COG0111@1|root,COG0111@2|Bacteria,1MU5Z@1224|Proteobacteria,2TR0F@28211|Alphaproteobacteria,2K0J0@204457|Sphingomonadales	204457|Sphingomonadales	E	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family	serA	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C,ACT
DYD3_k127_4688181_0	331869.BAL199_19733	1.694e-184	593.0	COG1932@1|root,COG1932@2|Bacteria,1MUB5@1224|Proteobacteria,2TSHT@28211|Alphaproteobacteria,4BPA9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	EH	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine	serC	-	2.6.1.52	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	M00020,M00124	R04173,R05085	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_5
DYD3_k127_4688181_3	1333998.M2A_0630	8.645e-10	67.0	2F0QR@1|root,33TT5@2|Bacteria,1NV43@1224|Proteobacteria,2UR9K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4692929_5	1207063.P24_00865	1.079e-88	303.0	COG0162@1|root,COG0162@2|Bacteria,1MVUQ@1224|Proteobacteria,2TQPA@28211|Alphaproteobacteria,2JQ31@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)	tyrS	-	6.1.1.1	ko:K01866	ko00970,map00970	M00359,M00360	R02918	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	S4,tRNA-synt_1b
DYD3_k127_4692929_2	402881.Plav_3266	4.759e-127	417.0	COG2377@1|root,COG2377@2|Bacteria,1MV4E@1224|Proteobacteria,2TS4G@28211|Alphaproteobacteria,1JN37@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling	anmK	-	2.7.1.170	ko:K09001	-	-	-	-	ko00000,ko01000	-	-	-	AnmK
DYD3_k127_4692929_4	1430440.MGMSRv2_1390	8.127e-98	323.0	COG2945@1|root,COG2945@2|Bacteria,1MUDY@1224|Proteobacteria,2TRMI@28211|Alphaproteobacteria,2JPJ6@204441|Rhodospirillales	204441|Rhodospirillales	S	hydrolase of the alpha beta superfamily	-	-	-	ko:K07018	-	-	-	-	ko00000	-	-	-	Hydrolase_4,Peptidase_S15,Peptidase_S9
DYD3_k127_4692929_7	1150469.RSPPHO_01576	3.101e-66	229.0	COG1959@1|root,COG1959@2|Bacteria,1RDA4@1224|Proteobacteria,2U5B9@28211|Alphaproteobacteria,2JRRT@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional regulator	iscR	-	-	ko:K13643	-	-	-	-	ko00000,ko03000	-	-	-	Rrf2
DYD3_k127_4692929_3	1121033.AUCF01000021_gene2833	1.911e-113	386.0	COG1104@1|root,COG1104@2|Bacteria,1MU1C@1224|Proteobacteria,2TSQE@28211|Alphaproteobacteria,2JPMZ@204441|Rhodospirillales	204441|Rhodospirillales	E	COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes	nifS	-	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
DYD3_k127_4692929_1	1380391.JIAS01000013_gene3549	3.921e-201	632.0	COG1104@1|root,COG1104@2|Bacteria,1MU1C@1224|Proteobacteria,2TSQE@28211|Alphaproteobacteria,2JPHR@204441|Rhodospirillales	204441|Rhodospirillales	E	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	iscS	-	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
DYD3_k127_4692929_6	243365.CV_1093	3.39e-69	235.0	COG0822@1|root,COG0822@2|Bacteria,1RD5K@1224|Proteobacteria,2VQ2I@28216|Betaproteobacteria,2KQX6@206351|Neisseriales	206351|Neisseriales	C	A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters	iscU	-	-	ko:K04488	-	-	-	-	ko00000	-	-	-	NifU_N
DYD3_k127_4692929_9	1244869.H261_15562	1.77e-49	179.0	COG0316@1|root,COG0316@2|Bacteria,1RH6T@1224|Proteobacteria,2UBWJ@28211|Alphaproteobacteria,2JSZV@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the HesB IscA family	iscA	-	-	ko:K13628	-	-	-	-	ko00000,ko03016	-	-	-	Fe-S_biosyn
DYD3_k127_4692929_10	1177928.TH2_11694	1.672e-40	157.0	COG1076@1|root,COG1076@2|Bacteria,1RHZX@1224|Proteobacteria,2U78T@28211|Alphaproteobacteria,2JSDD@204441|Rhodospirillales	204441|Rhodospirillales	O	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA	hscB	-	-	ko:K04082	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	DnaJ,HSCB_C
DYD3_k127_4692929_0	1528106.JRJE01000004_gene553	2.498e-237	750.0	COG0443@1|root,COG0443@2|Bacteria,1MVQI@1224|Proteobacteria,2U258@28211|Alphaproteobacteria,2JRBC@204441|Rhodospirillales	204441|Rhodospirillales	O	Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB	hscA	-	-	ko:K04044	-	-	-	-	ko00000,ko03110	1.A.33	-	-	HSP70
DYD3_k127_4692929_8	985867.AEWF01000003_gene808	1.29e-50	184.0	COG0633@1|root,COG0633@2|Bacteria,1RHDC@1224|Proteobacteria,2U97J@28211|Alphaproteobacteria,47FCR@766|Rickettsiales	766|Rickettsiales	C	Ferredoxin	fdxB	-	-	ko:K04755	-	-	-	-	ko00000	-	-	-	Fer2
DYD3_k127_4692929_12	1205680.CAKO01000007_gene4271	1.244e-30	121.0	COG2975@1|root,COG2975@2|Bacteria,1N7C1@1224|Proteobacteria,2UFQS@28211|Alphaproteobacteria,2JTXQ@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	Fe-S_assembly
DYD3_k127_4692929_11	1121861.KB899943_gene3915	8.183e-35	139.0	COG0819@1|root,COG0819@2|Bacteria,1R21S@1224|Proteobacteria,2U0I7@28211|Alphaproteobacteria,2JRZR@204441|Rhodospirillales	204441|Rhodospirillales	K	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway	-	-	3.5.99.2	ko:K03707	ko00730,ko01100,map00730,map01100	-	R02133,R09993	RC00224,RC00652,RC02832	ko00000,ko00001,ko01000,ko03000	-	-	-	TENA_THI-4
DYD3_k127_4734379_5	1122604.JONR01000048_gene995	2.134e-44	175.0	COG3563@1|root,COG3563@2|Bacteria,1MW0T@1224|Proteobacteria,1RPMS@1236|Gammaproteobacteria,1X6E1@135614|Xanthomonadales	135614|Xanthomonadales	M	Capsule polysaccharide biosynthesis protein	-	-	-	ko:K07266	-	-	-	-	ko00000	-	-	-	Capsule_synth
DYD3_k127_4734379_4	392499.Swit_4018	6.456e-85	284.0	COG1898@1|root,COG1898@2|Bacteria,1R9YD@1224|Proteobacteria,2U7G8@28211|Alphaproteobacteria,2K456@204457|Sphingomonadales	204457|Sphingomonadales	M	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose	-	-	5.1.3.13	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R06514	RC01531	ko00000,ko00001,ko00002,ko01000	-	-	-	dTDP_sugar_isom
DYD3_k127_4734379_1	1090320.KB900607_gene24	1.705e-168	535.0	COG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2TT5T@28211|Alphaproteobacteria,2K275@204457|Sphingomonadales	204457|Sphingomonadales	M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily	rmlB	-	4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD3_k127_4734379_3	426117.M446_5837	1.217e-99	347.0	COG1091@1|root,COG1091@2|Bacteria,1MUXM@1224|Proteobacteria,2TSP6@28211|Alphaproteobacteria,1JREW@119045|Methylobacteriaceae	28211|Alphaproteobacteria	M	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose	rfbD	-	1.1.1.133	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777	RC00182	ko00000,ko00001,ko00002,ko01000	-	-	-	RmlD_sub_bind
DYD3_k127_4734379_2	1323663.AROI01000016_gene502	4.376e-102	340.0	COG0300@1|root,COG0300@2|Bacteria,1R7MT@1224|Proteobacteria,1S0XC@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
DYD3_k127_4734379_0	1125973.JNLC01000010_gene1669	7.724e-197	623.0	COG1793@1|root,COG1793@2|Bacteria,1MV3S@1224|Proteobacteria,2TRQ9@28211|Alphaproteobacteria,3JRIV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA ligase	lig	-	6.5.1.1,6.5.1.6,6.5.1.7	ko:K10747	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00381,R00382,R10822,R10823	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N
DYD3_k127_4736138_7	1114964.L485_22915	2.349e-121	401.0	COG5514@1|root,COG5514@2|Bacteria,1MX90@1224|Proteobacteria,2TUIX@28211|Alphaproteobacteria,2K15G@204457|Sphingomonadales	204457|Sphingomonadales	S	Domain of unknown function (DUF1794)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1794
DYD3_k127_4736138_11	1218084.BBJK01000055_gene4267	6.811e-70	246.0	COG0500@1|root,COG2226@2|Bacteria,1RITQ@1224|Proteobacteria,2VXW6@28216|Betaproteobacteria,1K5NK@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	Nodulation protein S (NodS)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_4736138_16	402881.Plav_0895	2.645e-43	166.0	COG5402@1|root,COG5402@2|Bacteria,1N26C@1224|Proteobacteria,2TT9K@28211|Alphaproteobacteria,1JPG2@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1214)	MA20_15585	-	-	-	-	-	-	-	-	-	-	-	DUF1214
DYD3_k127_4736138_19	614083.AWQR01000011_gene2378	1.173e-23	113.0	COG5436@1|root,COG5436@2|Bacteria	2|Bacteria	S	integral membrane protein	MA20_15590	-	-	-	-	-	-	-	-	-	-	-	DUF1254
DYD3_k127_4736138_2	1121033.AUCF01000027_gene2758	2.462e-196	615.0	COG1077@1|root,COG1077@2|Bacteria,1MUMW@1224|Proteobacteria,2TTQ2@28211|Alphaproteobacteria,2JPHS@204441|Rhodospirillales	204441|Rhodospirillales	D	Rod shape-determining protein MreB	mreB	-	-	ko:K03569	-	-	-	-	ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1	-	-	MreB_Mbl
DYD3_k127_4736138_12	1380394.JADL01000009_gene3401	1.639e-68	244.0	COG1792@1|root,COG1792@2|Bacteria,1N8ZS@1224|Proteobacteria,2U1FY@28211|Alphaproteobacteria,2JQZK@204441|Rhodospirillales	204441|Rhodospirillales	M	Involved in formation and maintenance of cell shape	mreC	-	-	ko:K03570	-	-	-	-	ko00000,ko03036	9.B.157.1	-	-	MreC
DYD3_k127_4736138_20	1123355.JHYO01000026_gene256	5.749e-23	113.0	2DDTT@1|root,32U20@2|Bacteria,1N2J3@1224|Proteobacteria,2UCVI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	shape-determining protein	mreD	-	-	ko:K03571	-	-	-	-	ko00000,ko03036	9.B.157.1	-	-	MreD
DYD3_k127_4736138_1	1282876.BAOK01000001_gene1419	8.749e-222	713.0	COG0768@1|root,COG0768@2|Bacteria,1MV8C@1224|Proteobacteria,2TRXN@28211|Alphaproteobacteria,4BPTZ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Penicillin-binding protein 2	mrdA	-	3.4.16.4	ko:K05515	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011	-	-	-	PBP_dimer,Transpeptidase
DYD3_k127_4736138_4	1054213.HMPREF9946_00566	2.597e-155	501.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2TSX8@28211|Alphaproteobacteria,2JQI1@204441|Rhodospirillales	204441|Rhodospirillales	C	Iron-containing alcohol dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Fe-ADH
DYD3_k127_4736138_15	1110502.TMO_0549	1.443e-57	211.0	COG0824@1|root,COG0824@2|Bacteria,1RGZN@1224|Proteobacteria,2U95R@28211|Alphaproteobacteria,2JT13@204441|Rhodospirillales	204441|Rhodospirillales	S	Thioesterase-like superfamily	-	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT,4HBT_2
DYD3_k127_4736138_21	1205680.CAKO01000029_gene5003	2.948e-22	111.0	2F8EV@1|root,340TK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4736138_14	1121035.AUCH01000001_gene2073	7.567e-63	220.0	COG2193@1|root,COG2193@2|Bacteria,1RCW7@1224|Proteobacteria,2VPZP@28216|Betaproteobacteria,2KW26@206389|Rhodocyclales	206389|Rhodocyclales	P	iron-storage protein	-	-	1.16.3.1	ko:K03594	ko00860,map00860	-	R00078	RC02758	ko00000,ko00001,ko01000	-	-	-	Ferritin
DYD3_k127_4736138_22	1244869.H261_12356	9.758e-09	59.0	COG2906@1|root,COG2906@2|Bacteria,1Q2KK@1224|Proteobacteria,2V9WP@28211|Alphaproteobacteria,2JUGG@204441|Rhodospirillales	204441|Rhodospirillales	P	BFD-like [2Fe-2S] binding domain	-	-	-	ko:K02192	-	-	-	-	ko00000	-	-	-	Fer2_BFD
DYD3_k127_4736138_3	1168059.KB899087_gene4040	4.892e-157	503.0	COG1613@1|root,COG1613@2|Bacteria,1MUAU@1224|Proteobacteria,2TT52@28211|Alphaproteobacteria,3EYQS@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	sulfate ABC transporter	sbp	-	-	ko:K02048	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	SBP_bac_11
DYD3_k127_4736138_8	1380391.JIAS01000013_gene3425	5.743e-115	377.0	COG0555@1|root,COG0555@2|Bacteria,1QTTU@1224|Proteobacteria,2TTET@28211|Alphaproteobacteria,2JPE0@204441|Rhodospirillales	204441|Rhodospirillales	O	sulfate transport system, permease	cysT	-	-	ko:K02046	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	BPD_transp_1
DYD3_k127_4736138_5	1410620.SHLA_27c000250	1.446e-132	427.0	COG4208@1|root,COG4208@2|Bacteria,1MV8X@1224|Proteobacteria,2TQR8@28211|Alphaproteobacteria,4BA56@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	ABC-type sulfate transport system, permease component	cysW	-	-	ko:K02047	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	BPD_transp_1
DYD3_k127_4736138_6	1150626.PHAMO_30034	1.416e-124	409.0	COG1118@1|root,COG1118@2|Bacteria,1QTTT@1224|Proteobacteria,2TVZ3@28211|Alphaproteobacteria,2JQJP@204441|Rhodospirillales	204441|Rhodospirillales	P	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system	cysA	-	3.6.3.25	ko:K02045	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	ABC_tran,TOBE_3
DYD3_k127_4736138_10	1121106.JQKB01000048_gene3042	3.476e-84	288.0	2DB9X@1|root,2Z7ZS@2|Bacteria,1N6CK@1224|Proteobacteria,2U2ME@28211|Alphaproteobacteria,2JWW7@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF3445)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3445
DYD3_k127_4736138_9	414684.RC1_2426	4.999e-89	317.0	COG2989@1|root,COG2989@2|Bacteria,1MV14@1224|Proteobacteria,2TRJ9@28211|Alphaproteobacteria,2JPJ7@204441|Rhodospirillales	204441|Rhodospirillales	S	L,D-transpeptidase catalytic domain	-	-	-	ko:K21470	-	-	-	-	ko00000,ko01002,ko01011	-	-	-	PG_binding_1,YkuD
DYD3_k127_4736138_17	1121106.JQKB01000032_gene4401	1.527e-42	164.0	COG3108@1|root,COG3108@2|Bacteria,1MWW2@1224|Proteobacteria,2TQZ1@28211|Alphaproteobacteria,2JTBK@204441|Rhodospirillales	204441|Rhodospirillales	S	Bacterial protein of unknown function (DUF882)	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M15_2
DYD3_k127_4736138_18	889378.Spiaf_2575	5.026e-28	125.0	COG4099@1|root,COG4099@2|Bacteria	2|Bacteria	F	phospholipase Carboxylesterase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_2,DLH,Esterase,Peptidase_S9
DYD3_k127_4736138_0	243160.BMAA0079	3.798e-286	898.0	COG3511@1|root,COG3511@2|Bacteria,1MWVP@1224|Proteobacteria,2VMZ4@28216|Betaproteobacteria,1K02T@119060|Burkholderiaceae	28216|Betaproteobacteria	M	phospholipase C	plcN2	-	3.1.4.3	ko:K01114	ko00562,ko00564,ko00565,ko01100,ko01110,ko02024,ko04919,map00562,map00564,map00565,map01100,map01110,map02024,map04919	-	R01312,R02027,R02052,R03332,R07381	RC00017,RC00425	ko00000,ko00001,ko01000,ko02042	-	-	-	DUF756,Phosphoesterase
DYD3_k127_4736138_13	1380394.JADL01000016_gene372	4.681e-68	241.0	COG3770@1|root,COG3770@2|Bacteria,1MU9I@1224|Proteobacteria,2TR3K@28211|Alphaproteobacteria,2JSKX@204441|Rhodospirillales	204441|Rhodospirillales	M	Penicillin-insensitive murein endopeptidase	mepA	-	-	ko:K07261	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Peptidase_M74
DYD3_k127_4756291_3	1380394.JADL01000002_gene1164	6.454e-24	118.0	COG2982@1|root,COG2982@2|Bacteria,1MUNH@1224|Proteobacteria,2TT0W@28211|Alphaproteobacteria,2JR60@204441|Rhodospirillales	204441|Rhodospirillales	M	protein involved in outer membrane biogenesis	-	-	-	-	-	-	-	-	-	-	-	-	AsmA,AsmA_2
DYD3_k127_4756291_2	639283.Snov_2273	1.581e-114	377.0	COG1305@1|root,COG1305@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,3EZBD@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_4756291_4	1123229.AUBC01000026_gene4081	1.156e-18	90.0	COG4321@1|root,COG4321@2|Bacteria,1N7Z2@1224|Proteobacteria,2UF7W@28211|Alphaproteobacteria,3K0CA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ribbon-helix-helix domain	MA20_02235	-	-	-	-	-	-	-	-	-	-	-	RHH_4
DYD3_k127_4756291_1	1211115.ALIQ01000230_gene1650	2.038e-182	582.0	COG0114@1|root,COG0114@2|Bacteria,1MUQI@1224|Proteobacteria,2TQM7@28211|Alphaproteobacteria,3NADS@45404|Beijerinckiaceae	28211|Alphaproteobacteria	C	Fumarase C C-terminus	fumC	-	4.2.1.2	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	M00009,M00011,M00173,M00376	R01082	RC00443	ko00000,ko00001,ko00002,ko01000	-	-	-	FumaraseC_C,Lyase_1
DYD3_k127_4756291_5	257313.BP0328	3.051e-17	96.0	2E7ET@1|root,331XU@2|Bacteria,1NZP4@1224|Proteobacteria,2W9IA@28216|Betaproteobacteria,3T7PS@506|Alcaligenaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4756291_6	1123261.AXDW01000001_gene1162	9.383e-17	94.0	2DQUA@1|root,338QF@2|Bacteria,1PMQ5@1224|Proteobacteria,1SUEX@1236|Gammaproteobacteria,1XBH2@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4756291_0	1242864.D187_004458	2.897e-270	840.0	COG1838@1|root,COG1951@1|root,COG1838@2|Bacteria,COG1951@2|Bacteria,1MUV9@1224|Proteobacteria,43DIW@68525|delta/epsilon subdivisions,2X8Q7@28221|Deltaproteobacteria,2YUMS@29|Myxococcales	28221|Deltaproteobacteria	C	Catalyzes the reversible hydration of fumarate to (S)- malate	fumB	-	4.2.1.2	ko:K01676	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374	R01082	RC00443	ko00000,ko00001,ko00002,ko01000	-	-	-	Fumerase,Fumerase_C
DYD3_k127_4756291_7	114615.BRADO5583	1.522e-14	76.0	COG3814@1|root,COG3814@2|Bacteria,1N1FE@1224|Proteobacteria,2U7H9@28211|Alphaproteobacteria,3JW9Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Stringent starvation protein B	MA20_02250	-	-	ko:K09985	-	-	-	-	ko00000	-	-	-	SspB
DYD3_k127_4764324_1	1282876.BAOK01000001_gene3290	4.367e-94	319.0	COG0573@1|root,COG0573@2|Bacteria,1MVKP@1224|Proteobacteria,2TQU1@28211|Alphaproteobacteria,4BP9B@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	probably responsible for the translocation of the substrate across the membrane	pstC	-	-	ko:K02037	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	BPD_transp_1,DUF3708
DYD3_k127_4764324_0	1121033.AUCF01000003_gene3474	7.763e-145	467.0	COG0226@1|root,COG0226@2|Bacteria,1MUH9@1224|Proteobacteria,2TR1C@28211|Alphaproteobacteria,2JQB9@204441|Rhodospirillales	204441|Rhodospirillales	P	COG0226 ABC-type phosphate transport system, periplasmic component	pstS	-	-	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	PBP_like_2
DYD3_k127_4764324_2	1510531.JQJJ01000013_gene62	1.727e-60	221.0	COG0477@1|root,COG2814@2|Bacteria,1MUXC@1224|Proteobacteria,2TRR7@28211|Alphaproteobacteria,3JVCK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_4789853_2	1500257.JQNM01000001_gene3402	9.263e-151	490.0	COG0642@1|root,COG2205@2|Bacteria,1MUZQ@1224|Proteobacteria,2TSS7@28211|Alphaproteobacteria,4B70K@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	kdpD	-	2.7.13.3	ko:K07646	ko02020,map02020	M00454	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	DUF4118,GAF_3,HATPase_c,HisKA,KdpD,Usp
DYD3_k127_4789853_3	536019.Mesop_1846	2.232e-66	231.0	COG2156@1|root,COG2156@2|Bacteria,1RABG@1224|Proteobacteria,2TSQ7@28211|Alphaproteobacteria,43JU6@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex	kdpC	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132	3.6.3.12	ko:K01548	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	3.A.3.7	-	-	KdpC
DYD3_k127_4789853_0	1122132.AQYH01000003_gene3071	1.753e-314	975.0	COG2216@1|root,COG2216@2|Bacteria,1MU7D@1224|Proteobacteria,2TREM@28211|Alphaproteobacteria,4B8R3@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system	kdpB	-	3.6.3.12	ko:K01547	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	3.A.3.7	-	-	E1-E2_ATPase,Hydrolase
DYD3_k127_4789853_1	1380394.JADL01000007_gene4503	4.88e-262	818.0	COG2060@1|root,COG2060@2|Bacteria,1MV1K@1224|Proteobacteria,2TSIJ@28211|Alphaproteobacteria,2JPJD@204441|Rhodospirillales	204441|Rhodospirillales	P	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane	kdpA	-	3.6.3.12	ko:K01546	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	3.A.3.7	-	-	KdpA
DYD3_k127_4789922_2	1333998.M2A_2122	3.396e-36	142.0	COG2267@1|root,COG2267@2|Bacteria	2|Bacteria	I	carboxylic ester hydrolase activity	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_4789922_0	1123072.AUDH01000004_gene568	2.129e-124	403.0	COG5285@1|root,COG5285@2|Bacteria,1PF68@1224|Proteobacteria,2U1TB@28211|Alphaproteobacteria,2JVM3@204441|Rhodospirillales	204441|Rhodospirillales	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_4789922_1	1054213.HMPREF9946_01418	5.023e-57	207.0	COG2188@1|root,COG2188@2|Bacteria,1MVFM@1224|Proteobacteria,2U7HX@28211|Alphaproteobacteria,2JSF6@204441|Rhodospirillales	204441|Rhodospirillales	K	UTRA	-	-	-	ko:K05836	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
DYD3_k127_4814766_2	419610.Mext_4536	5.211e-21	95.0	COG1748@1|root,COG1748@2|Bacteria,1P35E@1224|Proteobacteria,2TSYM@28211|Alphaproteobacteria,1JSDZ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	Saccharopine dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	DUF4166,Sacchrp_dh_NADP
DYD3_k127_4814766_3	1207063.P24_01100	1.21e-13	76.0	2EH7Y@1|root,33AZT@2|Bacteria,1NJS2@1224|Proteobacteria,2UJZ5@28211|Alphaproteobacteria,2JUS4@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4814766_0	381666.H16_B0598	9.468e-124	415.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,2VHHF@28216|Betaproteobacteria,1K2JB@119060|Burkholderiaceae	28216|Betaproteobacteria	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_4814766_4	768671.ThimaDRAFT_0788	2.623e-06	55.0	COG0810@1|root,COG0810@2|Bacteria,1MZXC@1224|Proteobacteria,1S81P@1236|Gammaproteobacteria,1WYIA@135613|Chromatiales	135613|Chromatiales	U	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_4814766_5	377629.TERTU_0229	0.0007654	48.0	COG0810@1|root,COG0810@2|Bacteria,1MUMT@1224|Proteobacteria,1S3A6@1236|Gammaproteobacteria,2PNBB@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	M	TonB C terminal	tonB3	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
DYD3_k127_4814766_1	717785.HYPMC_0438	4.532e-100	334.0	COG2207@1|root,COG2207@2|Bacteria,1MXT9@1224|Proteobacteria,2U0UP@28211|Alphaproteobacteria,3N973@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	K	AraC-binding-like domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
DYD3_k127_4820578_3	1185652.USDA257_c27550	3.612e-09	61.0	COG2376@1|root,COG2376@2|Bacteria,1MVSR@1224|Proteobacteria,2TTK3@28211|Alphaproteobacteria,4BAQ1@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Dihydroxyacetone kinase	dhaK	-	2.7.1.28,2.7.1.29,4.6.1.15	ko:K00863	ko00051,ko00561,ko00680,ko01100,ko01120,ko01200,ko04622,map00051,map00561,map00680,map01100,map01120,map01200,map04622	M00344	R01011,R01059	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Dak1,Dak2
DYD3_k127_4820578_2	426355.Mrad2831_6187	3.823e-61	222.0	COG0829@1|root,COG0829@2|Bacteria,1RC5H@1224|Proteobacteria,2U6WD@28211|Alphaproteobacteria,1JS0P@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter	ureD2	-	-	ko:K03190	-	-	-	-	ko00000	-	-	-	UreD
DYD3_k127_4820578_1	1101191.KI912577_gene2959	2.854e-103	340.0	COG0378@1|root,COG0378@2|Bacteria,1MXDB@1224|Proteobacteria,2U3CW@28211|Alphaproteobacteria,1JTEG@119045|Methylobacteriaceae	28211|Alphaproteobacteria	KO	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG	ureG	-	-	ko:K03189	-	-	-	-	ko00000	-	-	-	cobW
DYD3_k127_4820578_0	1125973.JNLC01000018_gene2255	6.296e-314	965.0	COG0804@1|root,COG0804@2|Bacteria,1MW26@1224|Proteobacteria,2TSZF@28211|Alphaproteobacteria,3JWSR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Urease alpha-subunit, N-terminal domain	-	-	3.5.1.5	ko:K01428	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Urease_alpha
DYD3_k127_4841543_1	375451.RD1_0429	2.155e-90	307.0	COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,2TSTN@28211|Alphaproteobacteria,2P0ZD@2433|Roseobacter	28211|Alphaproteobacteria	K	Belongs to the ParB family	parB	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
DYD3_k127_4841543_0	1122137.AQXF01000001_gene3234	1.714e-108	357.0	COG1192@1|root,COG1192@2|Bacteria,1MV43@1224|Proteobacteria,2TSWH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	Chromosome Partitioning	parA	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
DYD3_k127_4841543_2	1121033.AUCF01000003_gene3391	2.962e-29	120.0	COG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,2U9T9@28211|Alphaproteobacteria,2JS6N@204441|Rhodospirillales	204441|Rhodospirillales	J	Specifically methylates the N7 position of guanine in position 527 of 16S rRNA	rsmG	-	2.1.1.170	ko:K03501	-	-	-	-	ko00000,ko01000,ko03009,ko03036	-	-	-	GidB
DYD3_k127_4843423_2	1123261.AXDW01000003_gene1953	1.051e-65	230.0	COG1028@1|root,COG1028@2|Bacteria,1MWB6@1224|Proteobacteria,1RMZB@1236|Gammaproteobacteria,1X3S7@135614|Xanthomonadales	135614|Xanthomonadales	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_4843423_0	1205680.CAKO01000029_gene5137	8.536e-92	306.0	COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,2U5C5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	-	-	-	-	-	-	-	-	-	-	GST_C,GST_C_3,GST_N_3
DYD3_k127_4843423_1	1205680.CAKO01000002_gene2486	6.251e-78	264.0	COG0625@1|root,COG0625@2|Bacteria,1MY47@1224|Proteobacteria,2TVGA@28211|Alphaproteobacteria,2JSXJ@204441|Rhodospirillales	204441|Rhodospirillales	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C,GST_N
DYD3_k127_4845808_4	351348.Maqu_1828	6.214e-30	120.0	COG1573@1|root,COG1573@2|Bacteria,1R9XV@1224|Proteobacteria,1S20R@1236|Gammaproteobacteria,4671B@72275|Alteromonadaceae	1236|Gammaproteobacteria	L	Uracil-DNA glycosylase	-	-	-	-	-	-	-	-	-	-	-	-	UDG
DYD3_k127_4845808_3	438753.AZC_2427	4.156e-38	151.0	COG1595@1|root,COG1595@2|Bacteria,1MX7T@1224|Proteobacteria,2U5A1@28211|Alphaproteobacteria,3F1EC@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Sigma-70, region 4	sigW	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_4845808_1	1282876.BAOK01000001_gene2501	1.48e-92	315.0	COG2141@1|root,COG2141@2|Bacteria,1MVF0@1224|Proteobacteria,2TTR7@28211|Alphaproteobacteria,4BRF4@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
DYD3_k127_4845808_0	1380394.JADL01000007_gene4471	1.774e-172	551.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,2JQKF@204441|Rhodospirillales	204441|Rhodospirillales	C	III protein, CoA-transferase family	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
DYD3_k127_4845808_2	402881.Plav_2652	3.172e-74	255.0	COG3917@1|root,COG3917@2|Bacteria,1RDNQ@1224|Proteobacteria,2VGB4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	2-hydroxychromene-2-carboxylate isomerase	MA20_32385	-	-	-	-	-	-	-	-	-	-	-	DSBA
DYD3_k127_4845808_7	1457393.AZ09_14900	2.327e-07	52.0	COG3293@1|root,COG3293@2|Bacteria,1PVIT@1224|Proteobacteria,2U1DA@28211|Alphaproteobacteria,2JZDW@204441|Rhodospirillales	204441|Rhodospirillales	L	Putative transposase of IS4/5 family (DUF4096)	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF4096
DYD3_k127_4845808_5	107635.AZUO01000001_gene377	1.93e-12	75.0	COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,2TQNY@28211|Alphaproteobacteria,36X2Z@31993|Methylocystaceae	28211|Alphaproteobacteria	KT	Region found in RelA / SpoT proteins	spoT	-	2.7.6.5,3.1.7.2	ko:K00951,ko:K01139	ko00230,map00230	-	R00336,R00429	RC00002,RC00078	ko00000,ko00001,ko01000,ko03009	-	-	-	ACT_4,HD_4,RelA_SpoT,TGS
DYD3_k127_4868453_2	652103.Rpdx1_3286	7.708e-101	335.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSRS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	methyl-accepting chemotaxis	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal,PAS_3,PAS_4
DYD3_k127_4868453_1	414684.RC1_2859	2.939e-179	567.0	COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,2TRZ1@28211|Alphaproteobacteria,2JQ3U@204441|Rhodospirillales	204441|Rhodospirillales	O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	dnaJ	-	-	ko:K03686	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	DnaJ,DnaJ_C,DnaJ_CXXCXGXG
DYD3_k127_4868453_0	1122962.AULH01000001_gene1494	1.2e-322	998.0	COG0443@1|root,COG0443@2|Bacteria,1MVEN@1224|Proteobacteria,2TR5H@28211|Alphaproteobacteria,36XPS@31993|Methylocystaceae	28211|Alphaproteobacteria	O	MreB/Mbl protein	dnaK	-	-	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	1.A.33.1	-	-	HSP70
DYD3_k127_4868453_3	1101190.ARWB01000001_gene2816	2.008e-68	236.0	COG1720@1|root,COG1720@2|Bacteria,1MUF0@1224|Proteobacteria,2TVD8@28211|Alphaproteobacteria,370FT@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family UPF0066	virR	-	-	-	-	-	-	-	-	-	-	-	UPF0066
DYD3_k127_4868453_4	1298858.AUEL01000002_gene1899	1.966e-46	175.0	COG2847@1|root,COG2847@2|Bacteria,1MZ3M@1224|Proteobacteria,2UBUR@28211|Alphaproteobacteria,43K1X@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Copper chaperone PCu(A)C	-	-	-	ko:K09796	-	-	-	-	ko00000,ko03110	-	-	-	PCuAC
DYD3_k127_4868453_7	269796.Rru_A3144	7.278e-08	55.0	COG3182@1|root,COG3182@2|Bacteria,1MX8C@1224|Proteobacteria,2TSQ9@28211|Alphaproteobacteria,2JPRE@204441|Rhodospirillales	204441|Rhodospirillales	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
DYD3_k127_4868453_5	1316936.K678_05818	6.802e-34	138.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2U06A@28211|Alphaproteobacteria,2JSHZ@204441|Rhodospirillales	204441|Rhodospirillales	K	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_4868453_6	1116369.KB890024_gene2981	4.155e-09	62.0	COG0642@1|root,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2TR1M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_7,Response_reg,dCache_1
DYD3_k127_4886519_4	384765.SIAM614_05170	2.128e-23	101.0	COG0463@1|root,COG0463@2|Bacteria,1PVP4@1224|Proteobacteria,2VFCW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_4886519_0	1380394.JADL01000001_gene2282	4.546e-292	908.0	COG0441@1|root,COG0441@2|Bacteria,1MUP2@1224|Proteobacteria,2TQWI@28211|Alphaproteobacteria,2JQ7K@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)	thrS	-	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD
DYD3_k127_4886519_6	1123355.JHYO01000013_gene1146	8.652e-14	78.0	COG1965@1|root,COG1965@2|Bacteria,1Q23G@1224|Proteobacteria,2UHXU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the frataxin family	cyaY	-	1.16.3.1	ko:K19054	ko00860,map00860	-	R00078	RC02758	ko00000,ko00001,ko01000,ko03029	-	-	-	Frataxin_Cyay
DYD3_k127_4886519_1	1121033.AUCF01000001_gene2306	1.002e-216	688.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,2JQAX@204441|Rhodospirillales	204441|Rhodospirillales	V	ABC-type multidrug transport system, ATPase and permease	-	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_4886519_3	1282876.BAOK01000001_gene1046	4.561e-76	268.0	COG3386@1|root,COG3386@2|Bacteria,1RFF0@1224|Proteobacteria,2U8ZK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Arylesterase	-	-	-	-	-	-	-	-	-	-	-	-	Arylesterase
DYD3_k127_4886519_5	883078.HMPREF9695_03201	8.032e-19	94.0	COG2050@1|root,COG2050@2|Bacteria,1PP3X@1224|Proteobacteria,2UI1J@28211|Alphaproteobacteria,3K10F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Domain of unknown function (DUF4442)	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_4886519_2	1238182.C882_2396	7.788e-86	289.0	COG1028@1|root,COG1028@2|Bacteria,1MVQW@1224|Proteobacteria,2TUA2@28211|Alphaproteobacteria,2JQ5Y@204441|Rhodospirillales	204441|Rhodospirillales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_4886724_4	1187851.A33M_0520	1.475e-19	90.0	COG0425@1|root,COG0746@1|root,COG0425@2|Bacteria,COG0746@2|Bacteria,1RH3M@1224|Proteobacteria,2TV2G@28211|Alphaproteobacteria,3FD88@34008|Rhodovulum	28211|Alphaproteobacteria	H	Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor	mobA	-	2.7.7.77	ko:K03752	ko00790,ko01100,map00790,map01100	-	R11581	-	ko00000,ko00001,ko01000	-	-	-	NTP_transf_3
DYD3_k127_4886724_0	331869.BAL199_05844	2.464e-118	387.0	COG1305@1|root,COG1305@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,4BRVN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_4886724_7	887327.HMPREF0476_1441	0.0007567	47.0	2AH2D@1|root,317BI@2|Bacteria,1Q1C7@1224|Proteobacteria,2W6GW@28216|Betaproteobacteria,2KTNJ@206351|Neisseriales	206351|Neisseriales	S	Entericidin EcnA/B family	-	-	-	-	-	-	-	-	-	-	-	-	Entericidin
DYD3_k127_4886724_6	1205680.CAKO01000024_gene4503	7.273e-07	59.0	2EM0K@1|root,33EQ3@2|Bacteria,1NIHC@1224|Proteobacteria,2UMWX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4886724_2	551275.KB899546_gene2363	4.518e-46	170.0	COG2050@1|root,COG2050@2|Bacteria,1RKWK@1224|Proteobacteria,2VG7X@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Thioesterase superfamily	MA20_28065	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_4886724_1	1333998.M2A_3326	3.027e-100	336.0	COG1063@1|root,COG1063@2|Bacteria,1MZ0B@1224|Proteobacteria,2U2M9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N
DYD3_k127_4886724_3	551275.KB899546_gene2362	4.363e-23	108.0	COG1309@1|root,COG1309@2|Bacteria,1N8IR@1224|Proteobacteria,2U336@28211|Alphaproteobacteria,43YTX@69657|Hyphomonadaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	ko:K18939	-	M00715	-	-	ko00000,ko00002,ko03000	-	-	-	TetR_C_13,TetR_N
DYD3_k127_4886724_5	639283.Snov_2243	2.118e-09	61.0	COG1028@1|root,COG1028@2|Bacteria,1R48C@1224|Proteobacteria,2U3SV@28211|Alphaproteobacteria,3F0WG@335928|Xanthobacteraceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_4900142_5	1121861.KB899918_gene3238	4.234e-30	134.0	2DM5E@1|root,31SVN@2|Bacteria,1MYKR@1224|Proteobacteria,2U9KT@28211|Alphaproteobacteria,2JSXH@204441|Rhodospirillales	204441|Rhodospirillales	S	Domain of unknown function (DUF4340)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4340
DYD3_k127_4900142_0	402881.Plav_1399	1.95e-148	492.0	COG3225@1|root,COG3225@2|Bacteria,1MY63@1224|Proteobacteria,2U1SX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	transport system involved in gliding motility, auxiliary component	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_transp_aux
DYD3_k127_4900142_1	402881.Plav_1398	8.515e-108	366.0	COG1277@1|root,COG1277@2|Bacteria,1NZZ9@1224|Proteobacteria,2TUXR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	N	ABC transporter permease	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_2,ABC2_membrane_3
DYD3_k127_4900142_2	1282876.BAOK01000002_gene385	2.107e-105	352.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2U2JX@28211|Alphaproteobacteria,4BQ7T@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	V	ATPases associated with a variety of cellular activities	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_4900142_4	1305735.JAFT01000005_gene2628	3.626e-35	138.0	2CCMQ@1|root,32RW3@2|Bacteria,1MZHB@1224|Proteobacteria,2UCC9@28211|Alphaproteobacteria,2PED1@252301|Oceanicola	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2794)	MA20_43795	-	-	-	-	-	-	-	-	-	-	-	DUF2794
DYD3_k127_4900142_3	1397527.Q670_04270	3.532e-60	224.0	2DB8Y@1|root,2Z7TF@2|Bacteria,1MW4C@1224|Proteobacteria,1RQC5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2236
DYD3_k127_4900142_6	402881.Plav_0498	0.000213	46.0	COG1309@1|root,COG1309@2|Bacteria,1RFAP@1224|Proteobacteria,2U9T7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator, TetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_4903115_6	1038858.AXBA01000002_gene3978	4.175e-28	119.0	2CN5Z@1|root,32SGB@2|Bacteria,1N1FB@1224|Proteobacteria,2UBV1@28211|Alphaproteobacteria,3EZW8@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2948)	MA20_21100	-	-	-	-	-	-	-	-	-	-	-	DUF2948
DYD3_k127_4903115_1	1244869.H261_11689	2.981e-104	349.0	COG0040@1|root,COG0040@2|Bacteria,1MUCY@1224|Proteobacteria,2TT0H@28211|Alphaproteobacteria,2JPTE@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity	hisG	-	2.4.2.17	ko:K00765	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01071	RC02819,RC03200	ko00000,ko00001,ko00002,ko01000	-	-	-	HisG
DYD3_k127_4903115_0	414684.RC1_1650	3.478e-185	589.0	COG0141@1|root,COG0141@2|Bacteria,1MUUF@1224|Proteobacteria,2TSBN@28211|Alphaproteobacteria,2JPGF@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine	hisD	-	1.1.1.23	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01158,R01163,R03012	RC00099,RC00242,RC00463	ko00000,ko00001,ko00002,ko01000	-	-	-	Histidinol_dh
DYD3_k127_4903115_4	1282876.BAOK01000001_gene3150	1.455e-58	209.0	COG5328@1|root,COG5328@2|Bacteria,1RA93@1224|Proteobacteria,2U741@28211|Alphaproteobacteria,4BQPS@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterised protein family (UPF0262)	MA20_21090	-	-	-	-	-	-	-	-	-	-	-	UPF0262
DYD3_k127_4903115_3	1380391.JIAS01000011_gene5295	3.68e-62	226.0	COG0394@1|root,COG0394@2|Bacteria,1RANV@1224|Proteobacteria,2U5EE@28211|Alphaproteobacteria,2JS65@204441|Rhodospirillales	204441|Rhodospirillales	T	Belongs to the low molecular weight phosphotyrosine protein phosphatase family	-	-	3.1.3.48	ko:K01104	-	-	-	-	ko00000,ko01000	-	-	-	LMWPc
DYD3_k127_4903115_9	366602.Caul_4041	1.288e-07	54.0	COG3905@1|root,COG3905@2|Bacteria	2|Bacteria	K	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source	-	-	-	-	-	-	-	-	-	-	-	-	RHH_1
DYD3_k127_4903115_5	1380391.JIAS01000011_gene5289	5.507e-36	141.0	COG0361@1|root,COG0361@2|Bacteria,1MZFU@1224|Proteobacteria,2UBRU@28211|Alphaproteobacteria,2JT73@204441|Rhodospirillales	204441|Rhodospirillales	J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex	infA	-	-	ko:K02518	-	-	-	-	ko00000,ko03012	-	-	-	eIF-1a
DYD3_k127_4903115_2	1123060.JONP01000016_gene5460	1.889e-65	229.0	COG0424@1|root,COG0424@2|Bacteria,1RH6H@1224|Proteobacteria,2TSS5@28211|Alphaproteobacteria,2JRPN@204441|Rhodospirillales	204441|Rhodospirillales	D	Maf-like protein	maf	-	-	ko:K06287	-	-	-	-	ko00000	-	-	-	Maf
DYD3_k127_4903115_7	349124.Hhal_2137	2.408e-27	127.0	COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,1RMIW@1236|Gammaproteobacteria,1WW9V@135613|Chromatiales	135613|Chromatiales	J	TIGRFAM ribonuclease, Rne Rng family	-	-	-	ko:K08301	-	-	-	-	ko00000,ko01000,ko03009,ko03019	-	-	-	RNase_E_G,S1
DYD3_k127_4903115_8	1168059.KB899087_gene2913	4.559e-18	90.0	COG3024@1|root,COG3024@2|Bacteria,1NGJ8@1224|Proteobacteria,2UJJF@28211|Alphaproteobacteria,3F017@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase	yacG	-	-	ko:K09862	-	-	-	-	ko00000	-	-	-	YacG
DYD3_k127_4915458_2	395964.KE386496_gene1343	9.66e-200	624.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3N9RU@45404|Beijerinckiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	aldA	-	-	ko:K00138	ko00010,ko00620,ko01100,ko01110,ko01120,map00010,map00620,map01100,map01110,map01120	-	R00711	RC00047	ko00000,ko00001,ko01000	-	-	-	Aldedh
DYD3_k127_4915458_3	1207063.P24_01910	5.956e-52	192.0	297YV@1|root,2ZV50@2|Bacteria,1N204@1224|Proteobacteria,2U5QH@28211|Alphaproteobacteria,2JTYE@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1826)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1826
DYD3_k127_4915458_4	1122132.AQYH01000003_gene2984	1.824e-20	93.0	2E4CR@1|root,32Z86@2|Bacteria,1N7UZ@1224|Proteobacteria,2UF9N@28211|Alphaproteobacteria,4BG1N@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	NADH-dependant formate dehydrogenase delta subunit FdsD	fdsD	-	1.17.1.9	ko:K00126	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	FdsD
DYD3_k127_4915458_0	1144310.PMI07_000063	0.0	1680.0	COG3383@1|root,COG3383@2|Bacteria,1QTZB@1224|Proteobacteria,2TVZI@28211|Alphaproteobacteria,4BAAT@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	formate dehydrogenase	fdsA	-	1.17.1.9	ko:K00123	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	Fer2_4,Fer4,Fer4_7,Fer4_9,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,NADH-G_4Fe-4S_3
DYD3_k127_4915458_1	1449065.JMLL01000010_gene481	6.303e-224	698.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2TR1V@28211|Alphaproteobacteria,43H95@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	NADH ubiquinone oxidoreductase NADH-binding (51 kD) subunit	fdsB	-	1.6.5.3	ko:K00124,ko:K00335	ko00190,ko00630,ko00680,ko01100,ko01120,ko01200,map00190,map00630,map00680,map01100,map01120,map01200	M00144	R00519,R11945	RC00061,RC02796	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_51K,NADH_4Fe-4S,SLBB
DYD3_k127_4922732_18	543728.Vapar_4797	2.369e-08	57.0	COG1075@1|root,COG1075@2|Bacteria,1NJNA@1224|Proteobacteria,2VPNT@28216|Betaproteobacteria,4ABJK@80864|Comamonadaceae	28216|Betaproteobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6,PGAP1
DYD3_k127_4922732_15	1122963.AUHB01000031_gene4527	7.996e-31	124.0	COG3293@1|root,COG3293@2|Bacteria,1RM2E@1224|Proteobacteria,2U8WG@28211|Alphaproteobacteria,3719Q@31993|Methylocystaceae	28211|Alphaproteobacteria	L	Putative transposase of IS4/5 family (DUF4096)	-	-	-	ko:K07492	-	-	-	-	ko00000	-	-	-	DUF4096
DYD3_k127_4922732_5	1318628.MARLIPOL_09941	3.959e-104	345.0	COG1028@1|root,COG1028@2|Bacteria,1MWB6@1224|Proteobacteria,1RMZB@1236|Gammaproteobacteria,465KH@72275|Alteromonadaceae	1236|Gammaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	1.1.1.127	ko:K00065	ko00040,map00040	-	R01542	RC00089	ko00000,ko00001,ko01000	-	-	-	adh_short,adh_short_C2
DYD3_k127_4922732_1	1122604.JONR01000036_gene3805	5.964e-218	680.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,1RNJH@1236|Gammaproteobacteria,1X4KZ@135614|Xanthomonadales	135614|Xanthomonadales	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_4922732_7	1316936.K678_12951	2.357e-96	322.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TWIJ@28211|Alphaproteobacteria,2JTHF@204441|Rhodospirillales	204441|Rhodospirillales	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_4922732_8	1095769.CAHF01000006_gene1983	5.089e-76	261.0	COG0406@1|root,COG0406@2|Bacteria,1RB0S@1224|Proteobacteria,2VJR8@28216|Betaproteobacteria,476NG@75682|Oxalobacteraceae	28216|Betaproteobacteria	G	Phosphoglycerate mutase family	-	-	-	-	-	-	-	-	-	-	-	-	His_Phos_1
DYD3_k127_4922732_4	1198452.Jab_1c14730	2.839e-116	388.0	COG0583@1|root,COG0583@2|Bacteria,1NYPZ@1224|Proteobacteria,2VPBF@28216|Betaproteobacteria,476ET@75682|Oxalobacteraceae	28216|Betaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_4922732_17	450851.PHZ_p0004	7.194e-13	79.0	COG1525@1|root,COG1525@2|Bacteria,1N145@1224|Proteobacteria,2UCUE@28211|Alphaproteobacteria,2KHH9@204458|Caulobacterales	204458|Caulobacterales	L	Staphylococcal nuclease homologue	-	-	-	-	-	-	-	-	-	-	-	-	SNase
DYD3_k127_4922732_11	395963.Bind_0322	1.36e-51	186.0	COG0346@1|root,COG0346@2|Bacteria,1RI3Q@1224|Proteobacteria,2U8J8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_4922732_3	1415779.JOMH01000001_gene538	1.564e-119	389.0	COG0412@1|root,COG0412@2|Bacteria,1PSEB@1224|Proteobacteria,1RNZS@1236|Gammaproteobacteria,1X352@135614|Xanthomonadales	135614|Xanthomonadales	Q	Dienelactone hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	DLH
DYD3_k127_4922732_12	402881.Plav_1641	1.623e-51	192.0	COG5031@1|root,COG5031@2|Bacteria,1RGXT@1224|Proteobacteria,2U8F1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Coenzyme Q (ubiquinone) biosynthesis protein Coq4	-	-	-	ko:K18586	-	-	-	-	ko00000	-	-	-	Coq4
DYD3_k127_4922732_13	1333998.M2A_1992	2.365e-47	178.0	COG1309@1|root,COG1309@2|Bacteria,1NB4W@1224|Proteobacteria,2UIGM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_4922732_16	118163.Ple7327_2755	2.177e-24	108.0	COG3544@1|root,COG3544@2|Bacteria,1GAAR@1117|Cyanobacteria	1117|Cyanobacteria	S	Domain of unknown function (DUF305)	-	-	-	-	-	-	-	-	-	-	-	-	DUF305
DYD3_k127_4922732_2	1504672.669783770	2.599e-166	535.0	COG3391@1|root,COG3391@2|Bacteria,1MVXR@1224|Proteobacteria,2VJPF@28216|Betaproteobacteria	28216|Betaproteobacteria	S	40-residue yvtn family beta-propeller repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	Lactonase
DYD3_k127_4922732_6	1205680.CAKO01000037_gene1401	1.44e-97	327.0	COG5662@1|root,COG5662@2|Bacteria,1RK1X@1224|Proteobacteria,2U8SM@28211|Alphaproteobacteria,2JUT4@204441|Rhodospirillales	204441|Rhodospirillales	K	transmembrane transcriptional regulator (Anti-sigma factor)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4922732_9	395965.Msil_0854	4.272e-65	228.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2TUUZ@28211|Alphaproteobacteria,3NBQS@45404|Beijerinckiaceae	28211|Alphaproteobacteria	K	ECF sigma factor	prtI	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_4922732_14	652103.Rpdx1_4260	6.871e-45	169.0	COG4315@1|root,COG4315@2|Bacteria,1MZC6@1224|Proteobacteria,2UCKS@28211|Alphaproteobacteria,3JYSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Secreted repeat of unknown function	MA20_31645	-	-	-	-	-	-	-	-	-	-	-	Lipoprotein_15
DYD3_k127_4922732_10	519989.ECTPHS_06152	1.114e-59	218.0	COG1028@1|root,COG1028@2|Bacteria,1RHYX@1224|Proteobacteria,1S0GN@1236|Gammaproteobacteria,1X29Y@135613|Chromatiales	135613|Chromatiales	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_4922732_0	1380394.JADL01000016_gene411	0.0	1088.0	COG0145@1|root,COG0146@1|root,COG0145@2|Bacteria,COG0146@2|Bacteria,1MU2Y@1224|Proteobacteria,2TQZ6@28211|Alphaproteobacteria,2JQPR@204441|Rhodospirillales	204441|Rhodospirillales	EQ	Hydantoinase/oxoprolinase N-terminal region	-	-	3.5.2.9	ko:K01469	ko00480,map00480	-	R00251	RC00553	ko00000,ko00001,ko01000	-	-	-	Hydant_A_N,Hydantoinase_A,Hydantoinase_B
DYD3_k127_4930347_1	402881.Plav_1296	6.763e-76	258.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,1JMYE@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	Aminotransferase class-III	bioA	-	2.6.1.113	ko:K12256	ko00330,ko01100,map00330,map01100	-	R08714	RC00008,RC00062	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_4930347_3	85643.Tmz1t_1065	1.488e-51	186.0	COG1569@1|root,COG1569@2|Bacteria,1N9YY@1224|Proteobacteria,2VWAY@28216|Betaproteobacteria	28216|Betaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN_3
DYD3_k127_4930347_4	1348657.M622_03870	5.395e-28	114.0	COG2161@1|root,COG2161@2|Bacteria,1Q0YS@1224|Proteobacteria,2W5WQ@28216|Betaproteobacteria	28216|Betaproteobacteria	D	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_4930347_0	1122962.AULH01000020_gene3609	5.491e-130	425.0	COG0687@1|root,COG0687@2|Bacteria,1MUYW@1224|Proteobacteria,2TSUZ@28211|Alphaproteobacteria,36X2Q@31993|Methylocystaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding protein	potF	-	-	ko:K11073	ko02010,map02010	M00300	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.2	-	-	SBP_bac_6,SBP_bac_8
DYD3_k127_4930347_2	1336249.JADW01000003_gene3817	7.548e-63	220.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,4B8X7@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex potABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	potA	GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351	-	ko:K11076	ko02010,map02010	M00300	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.2	-	-	ABC_tran,TOBE_2
DYD3_k127_4931988_0	1370122.JHXQ01000002_gene2699	4.664e-230	717.0	COG0538@1|root,COG0538@2|Bacteria,1MUIB@1224|Proteobacteria,2TQWD@28211|Alphaproteobacteria,4B99K@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the isocitrate and isopropylmalate dehydrogenases family	icd	-	1.1.1.42	ko:K00031	ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146	M00009,M00010,M00173,M00740	R00267,R00268,R01899	RC00001,RC00084,RC00114,RC00626,RC02801	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
DYD3_k127_4931988_4	1101191.KI912577_gene3852	3.063e-109	365.0	COG0455@1|root,COG0455@2|Bacteria,1MW3G@1224|Proteobacteria,2U4HG@28211|Alphaproteobacteria,1JZA4@119045|Methylobacteriaceae	28211|Alphaproteobacteria	D	GSCFA family	-	-	-	-	-	-	-	-	-	-	-	-	GSCFA
DYD3_k127_4931988_5	36809.MAB_0349c	4.769e-103	343.0	COG0596@1|root,COG0596@2|Bacteria,2IDW0@201174|Actinobacteria,23ET8@1762|Mycobacteriaceae	201174|Actinobacteria	S	Ndr family	-	-	3.1.1.24	ko:K01055	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	M00568	R02991	RC00825	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_1,Abhydrolase_4
DYD3_k127_4931988_7	472759.Nhal_2258	3.733e-86	298.0	COG0845@1|root,COG0845@2|Bacteria,1MU8D@1224|Proteobacteria,1RN0E@1236|Gammaproteobacteria,1WX2Q@135613|Chromatiales	135613|Chromatiales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K02005	-	-	-	-	ko00000	-	-	-	HlyD_3,HlyD_D23,OEP
DYD3_k127_4931988_6	69279.BG36_18450	2.688e-95	317.0	COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,2TS3W@28211|Alphaproteobacteria,43I5P@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_4931988_2	555778.Hneap_0780	2.421e-127	421.0	COG0577@1|root,COG0577@2|Bacteria,1PBKH@1224|Proteobacteria,1T1FT@1236|Gammaproteobacteria,1WXYB@135613|Chromatiales	135613|Chromatiales	V	MacB-like periplasmic core domain	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
DYD3_k127_4931988_1	1333998.M2A_1719	5.794e-168	556.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,4BRH9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	ko:K06446	ko00930,ko01100,ko01120,map00930,map01100,map01120	-	R06943	RC00052	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_4931988_8	1038860.AXAP01000088_gene3668	1.972e-61	218.0	COG2860@1|root,COG2860@2|Bacteria,1RHQN@1224|Proteobacteria,2U6B7@28211|Alphaproteobacteria,3K6IK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	UPF0126 domain	-	-	-	-	-	-	-	-	-	-	-	-	UPF0126
DYD3_k127_4931988_3	1235457.C404_27880	1.386e-125	412.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2VP2E@28216|Betaproteobacteria,1K38M@119060|Burkholderiaceae	28216|Betaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	His_biosynth,Oxidored_FMN
DYD3_k127_4932815_2	663610.JQKO01000005_gene2409	6.436e-244	770.0	COG0651@1|root,COG0651@2|Bacteria,1MVBA@1224|Proteobacteria,2TSRU@28211|Alphaproteobacteria,3NC5M@45404|Beijerinckiaceae	28211|Alphaproteobacteria	CP	Proton-conducting membrane transporter	hyfF	-	-	ko:K12141	-	-	-	-	ko00000,ko01000	-	-	-	Proton_antipo_M
DYD3_k127_4932815_6	78245.Xaut_0168	7.26e-102	352.0	COG4237@1|root,COG4237@2|Bacteria,1NAT8@1224|Proteobacteria,2TUAC@28211|Alphaproteobacteria,3F0SP@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	COG4237 Hydrogenase 4 membrane component (E)	hyfE	-	-	ko:K12140	-	-	-	-	ko00000,ko01000	-	-	-	-
DYD3_k127_4932815_4	536019.Mesop_2131	1.898e-136	470.0	COG0650@1|root,COG0650@2|Bacteria,1MXV5@1224|Proteobacteria,2U0GZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NADH dehydrogenase	hycD	-	-	-	-	-	-	-	-	-	-	-	NADHdh
DYD3_k127_4932815_1	663610.JQKO01000005_gene2406	8.863e-316	979.0	COG0651@1|root,COG0651@2|Bacteria,1MXRW@1224|Proteobacteria,2TZIX@28211|Alphaproteobacteria,3NC92@45404|Beijerinckiaceae	28211|Alphaproteobacteria	CP	Proton-conducting membrane transporter	hyfB	-	-	-	-	-	-	-	-	-	-	-	Proton_antipo_M
DYD3_k127_4932815_11	1131814.JAFO01000001_gene421	1.879e-30	123.0	COG1396@1|root,COG1396@2|Bacteria,1MZQK@1224|Proteobacteria,2UCAK@28211|Alphaproteobacteria,3F1XD@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
DYD3_k127_4932815_9	269796.Rru_A0707	7.673e-33	128.0	COG0271@1|root,COG0271@2|Bacteria,1R3MM@1224|Proteobacteria,2UBUW@28211|Alphaproteobacteria,2JTE0@204441|Rhodospirillales	204441|Rhodospirillales	T	Belongs to the BolA IbaG family	-	-	-	-	-	-	-	-	-	-	-	-	BolA
DYD3_k127_4932815_5	460265.Mnod_6594	2.163e-115	377.0	COG1305@1|root,COG1305@2|Bacteria,1MWAI@1224|Proteobacteria,2TURT@28211|Alphaproteobacteria,1JQZ6@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	PFAM transglutaminase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Transglut_core
DYD3_k127_4932815_0	1380394.JADL01000011_gene3832	0.0	1065.0	COG0046@1|root,COG0046@2|Bacteria,1MYN4@1224|Proteobacteria,2TRGM@28211|Alphaproteobacteria,2JQPF@204441|Rhodospirillales	204441|Rhodospirillales	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purL	-	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_4932815_7	187303.BN69_2952	6.514e-97	325.0	COG0047@1|root,COG0047@2|Bacteria,1MU4Y@1224|Proteobacteria,2TS67@28211|Alphaproteobacteria,36Y27@31993|Methylocystaceae	28211|Alphaproteobacteria	F	CobB/CobQ-like glutamine amidotransferase domain	purQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase_5
DYD3_k127_4932815_12	1430440.MGMSRv2_2038	4.891e-30	120.0	COG1828@1|root,COG1828@2|Bacteria,1N83G@1224|Proteobacteria,2UF7S@28211|Alphaproteobacteria,2JTEV@204441|Rhodospirillales	204441|Rhodospirillales	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purS	-	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	PurS
DYD3_k127_4932815_3	1380391.JIAS01000015_gene328	3.926e-138	455.0	COG0152@1|root,COG0152@2|Bacteria,1MUR9@1224|Proteobacteria,2TR8D@28211|Alphaproteobacteria,2JPK8@204441|Rhodospirillales	204441|Rhodospirillales	F	Belongs to the SAICAR synthetase family	purC	-	6.3.2.6	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04591	RC00064,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	SAICAR_synt
DYD3_k127_4932815_10	1126627.BAWE01000005_gene5466	4.075e-32	131.0	COG5467@1|root,COG5467@2|Bacteria,1MZRN@1224|Proteobacteria,2UC1G@28211|Alphaproteobacteria,3JZI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1476)	MA20_09035	-	-	-	-	-	-	-	-	-	-	-	DUF1476
DYD3_k127_4932815_8	1408224.SAMCCGM7_c2921	1.039e-40	157.0	COG0454@1|root,COG0456@2|Bacteria,1RHB3@1224|Proteobacteria,2UDFB@28211|Alphaproteobacteria,4BE7A@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase	ysnE	-	-	ko:K03829	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_7
DYD3_k127_4946942_6	1236541.BALL01000013_gene2023	4.201e-06	57.0	2DRDR@1|root,33BBB@2|Bacteria,1NZ2U@1224|Proteobacteria,1SQXZ@1236|Gammaproteobacteria,2QAR4@267890|Shewanellaceae	1236|Gammaproteobacteria	S	Domain of unknown function (DUF4274)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4274
DYD3_k127_4946942_4	1298867.AUES01000052_gene4474	1.767e-29	119.0	COG2002@1|root,COG2002@2|Bacteria,1N3C8@1224|Proteobacteria,2VGM1@28211|Alphaproteobacteria,3K4WM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	SpoVT / AbrB like domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4946942_0	1297569.MESS2_980076	9.179e-166	528.0	COG3177@1|root,COG3177@2|Bacteria,1MV69@1224|Proteobacteria,2TT3J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Filamentation induced by cAMP protein fic	-	-	-	-	-	-	-	-	-	-	-	-	DUF4172,Fic
DYD3_k127_4946942_2	1038867.AXAY01000005_gene7284	9.32e-77	261.0	COG2128@1|root,COG2128@2|Bacteria,1MWWX@1224|Proteobacteria,2TQPH@28211|Alphaproteobacteria,3JRFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_4946942_3	742159.HMPREF0004_4511	3.979e-50	184.0	COG4899@1|root,COG4899@2|Bacteria,1N9UQ@1224|Proteobacteria,2VWTJ@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2199)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2199
DYD3_k127_4946942_1	1218084.BBJK01000014_gene1499	1.365e-120	393.0	2BHK6@1|root,32BNR@2|Bacteria,1PRMZ@1224|Proteobacteria,2W9YA@28216|Betaproteobacteria,1KF6I@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_4946942_5	1168065.DOK_18595	4.029e-09	64.0	2EAY6@1|root,334Z6@2|Bacteria,1NF1E@1224|Proteobacteria,1SDFW@1236|Gammaproteobacteria,1JAAX@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_495351_3	570952.ATVH01000014_gene2183	9.058e-14	70.0	COG0176@1|root,COG0176@2|Bacteria,1MWQ8@1224|Proteobacteria,2TQJB@28211|Alphaproteobacteria,2JPS6@204441|Rhodospirillales	204441|Rhodospirillales	G	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD3_k127_495351_2	1380394.JADL01000008_gene3727	2.494e-44	172.0	COG3159@1|root,COG3159@2|Bacteria,1NEKF@1224|Proteobacteria,2TV4V@28211|Alphaproteobacteria,2JSBX@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	ko:K09921	-	-	-	-	ko00000	-	-	-	DUF484
DYD3_k127_495351_1	1430440.MGMSRv2_3882	4.862e-109	362.0	COG4973@1|root,COG4973@2|Bacteria,1MUJJ@1224|Proteobacteria,2TVZJ@28211|Alphaproteobacteria,2JYV0@204441|Rhodospirillales	204441|Rhodospirillales	L	Belongs to the 'phage' integrase family. XerC subfamily	xerC	-	-	ko:K03733	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD3_k127_495351_0	1110502.TMO_3004	1.406e-198	631.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TRN7@28211|Alphaproteobacteria,2JQ3A@204441|Rhodospirillales	204441|Rhodospirillales	C	COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	lpd	-	1.8.1.4	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Pyr_redox_2,Pyr_redox_dim
DYD3_k127_4962177_2	402881.Plav_3088	6.674e-116	379.0	COG1804@1|root,COG1804@2|Bacteria,1MW1H@1224|Proteobacteria,2TR7D@28211|Alphaproteobacteria,1JN9E@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_39420	-	5.1.99.4	ko:K01796	ko00120,ko01100,ko04146,map00120,map01100,map04146	M00104	R08734,R08739	RC02345	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_transf_3
DYD3_k127_4962177_5	479433.Caci_0718	1.901e-54	196.0	COG4341@1|root,COG4341@2|Bacteria,2I9IF@201174|Actinobacteria	201174|Actinobacteria	Q	clavaminate synthase activity	-	-	1.14.11.1	ko:K00471	ko00310,map00310	-	R02397	RC00709	ko00000,ko00001,ko01000	-	-	-	DUF971,HD,TauD
DYD3_k127_4962177_0	402881.Plav_3087	5.135e-186	593.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TR3P@28211|Alphaproteobacteria,1JNCA@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_4962177_3	634500.EbC_15590	1.151e-76	267.0	COG0697@1|root,COG0697@2|Bacteria,1N024@1224|Proteobacteria,1RSNH@1236|Gammaproteobacteria,3X55Z@551|Erwinia	1236|Gammaproteobacteria	EG	EamA-like transporter family	yedA	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_4962177_6	273526.SMDB11_1067	2.269e-52	190.0	COG1476@1|root,COG1476@2|Bacteria,1QVNA@1224|Proteobacteria,1T2FM@1236|Gammaproteobacteria,4017X@613|Serratia	1236|Gammaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2,HTH_3
DYD3_k127_4962177_7	1122169.AREN01000010_gene2499	7.57e-43	168.0	COG0692@1|root,COG0692@2|Bacteria,1RKFZ@1224|Proteobacteria,1SXI2@1236|Gammaproteobacteria,1JCD6@118969|Legionellales	118969|Legionellales	L	uracil DNA glycosylase	ung	-	3.2.2.27	ko:K03648	ko03410,ko05340,map03410,map05340	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_4962177_1	1041146.ATZB01000040_gene366	7.26e-172	542.0	COG0010@1|root,COG0010@2|Bacteria,1MVFH@1224|Proteobacteria,2TT0P@28211|Alphaproteobacteria,4B7IA@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Arginase family	-	-	3.5.3.11	ko:K01480	ko00330,ko01100,map00330,map01100	M00133	R01157	RC00024,RC00329	ko00000,ko00001,ko00002,ko01000	-	-	-	Arginase
DYD3_k127_4962177_4	1333998.M2A_0443	2.036e-71	254.0	COG1028@1|root,COG1028@2|Bacteria,1MXWI@1224|Proteobacteria,2TQQ6@28211|Alphaproteobacteria,4BT7T@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_4962177_8	1382303.JPOM01000001_gene400	4.443e-24	107.0	COG0657@1|root,COG0657@2|Bacteria,1RD8A@1224|Proteobacteria,2U1B8@28211|Alphaproteobacteria,2KH1D@204458|Caulobacterales	204458|Caulobacterales	I	Steryl acetyl hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
DYD3_k127_4977824_7	1230476.C207_06807	9.584e-08	54.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,2TRVA@28211|Alphaproteobacteria,3JZ7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
DYD3_k127_4977824_4	1207063.P24_03525	1.545e-21	105.0	COG3064@1|root,COG3064@2|Bacteria,1NAWA@1224|Proteobacteria,2TSQY@28211|Alphaproteobacteria,2JTC2@204441|Rhodospirillales	204441|Rhodospirillales	M	Protein of unknown function (DUF3108)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3108
DYD3_k127_4977824_1	402881.Plav_1705	6.219e-122	400.0	COG1703@1|root,COG1703@2|Bacteria,1MVI0@1224|Proteobacteria,2TS96@28211|Alphaproteobacteria,1JN63@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	ArgK protein	argK	-	-	ko:K07588	-	-	-	-	ko00000,ko01000	-	-	-	ArgK
DYD3_k127_4977824_8	251221.35214691	4.522e-05	49.0	COG3609@1|root,COG3609@2|Bacteria,1GF9A@1117|Cyanobacteria	1117|Cyanobacteria	K	addiction module antidote protein, CC2985 family	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_4977824_5	1168059.KB899087_gene799	6.075e-10	69.0	COG3668@1|root,COG3668@2|Bacteria,1N7U3@1224|Proteobacteria,2UH40@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_4977824_6	414684.RC1_1018	9.015e-08	61.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2TSK3@28211|Alphaproteobacteria,2JQ01@204441|Rhodospirillales	204441|Rhodospirillales	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_4977824_0	1333998.M2A_1473	1.324e-185	589.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2TSK3@28211|Alphaproteobacteria,4BPRD@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_31035	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_4977824_3	1282876.BAOK01000001_gene2960	2.332e-62	218.0	COG0590@1|root,COG0590@2|Bacteria,1RGU0@1224|Proteobacteria,2U77Q@28211|Alphaproteobacteria,4BQFQ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	FJ	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)	tadA	-	3.5.4.1,3.5.4.3,3.5.4.33	ko:K01485,ko:K01487,ko:K11991	ko00230,ko00240,ko00330,ko01100,map00230,map00240,map00330,map01100	-	R00974,R01411,R01676,R02922,R10223	RC00074,RC00204,RC00477,RC00514,RC00809	ko00000,ko00001,ko01000,ko03016	-	-	-	MafB19-deam,dCMP_cyt_deam_1
DYD3_k127_4977824_2	402881.Plav_0644	9.703e-80	280.0	COG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,2TQP2@28211|Alphaproteobacteria,1JMZT@119043|Rhodobiaceae	28211|Alphaproteobacteria	J	RNA pseudouridylate synthase	rluB	-	5.4.99.22	ko:K06178	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_5014853_0	1217720.ALOX01000066_gene3857	2.525e-95	332.0	COG2358@1|root,COG2358@2|Bacteria	2|Bacteria	G	TRAP transporter, solute receptor (TAXI family	-	-	3.2.1.52	ko:K01207,ko:K07080	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF2491,NMT1_3,Pkinase,TIR_2,TPR_10
DYD3_k127_5014853_4	1280946.HY29_10160	6.745e-18	89.0	COG3766@1|root,COG3766@2|Bacteria,1RJKS@1224|Proteobacteria,2UBJI@28211|Alphaproteobacteria,43YGH@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Domain of Unknown Function (DUF350)	-	-	-	ko:K08989	-	-	-	-	ko00000	-	-	-	DUF350
DYD3_k127_5014853_2	572477.Alvin_1269	9.813e-88	297.0	2EIUF@1|root,33CJS@2|Bacteria,1NMKI@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5014853_5	570952.ATVH01000011_gene73	5.257e-13	75.0	COG5455@1|root,COG5455@2|Bacteria,1N3PU@1224|Proteobacteria,2UGK9@28211|Alphaproteobacteria,2JUR7@204441|Rhodospirillales	204441|Rhodospirillales	S	response to cobalt ion	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5014853_1	1244869.H261_01946	1.307e-90	305.0	COG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,2TR57@28211|Alphaproteobacteria,2JQQ7@204441|Rhodospirillales	204441|Rhodospirillales	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	truA	-	5.4.99.12	ko:K06173	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	PseudoU_synth_1
DYD3_k127_5014853_3	1121033.AUCF01000007_gene5871	1.224e-40	155.0	COG0223@1|root,COG0223@2|Bacteria,1MU4Q@1224|Proteobacteria,2TSWX@28211|Alphaproteobacteria,2JQJM@204441|Rhodospirillales	204441|Rhodospirillales	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	fmt	-	2.1.2.9	ko:K00604	ko00670,ko00970,map00670,map00970	-	R03940	RC00026,RC00165	ko00000,ko00001,ko01000	-	-	-	Formyl_trans_C,Formyl_trans_N
DYD3_k127_5016278_2	78245.Xaut_4835	3.414e-109	358.0	COG2020@1|root,COG2020@2|Bacteria,1MUBZ@1224|Proteobacteria	1224|Proteobacteria	O	isoprenylcysteine carboxyl methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	ICMT,PEMT
DYD3_k127_5016278_6	78245.Xaut_4587	8.107e-48	178.0	2DNEG@1|root,32X40@2|Bacteria,1R7P4@1224|Proteobacteria,2UCRV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	LTXXQ motif family protein	-	-	-	-	-	-	-	-	-	-	-	-	LTXXQ
DYD3_k127_5016278_9	78245.Xaut_4841	2.39e-13	75.0	COG3547@1|root,COG3547@2|Bacteria,1MUER@1224|Proteobacteria,2URW3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Transposase	-	-	-	ko:K07486	-	-	-	-	ko00000	-	-	-	DEDD_Tnp_IS110
DYD3_k127_5016278_0	1238182.C882_1090	1.337e-235	739.0	COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TSCR@28211|Alphaproteobacteria,2JPN8@204441|Rhodospirillales	204441|Rhodospirillales	E	glutamine synthetase	glnA	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C,Gln-synt_N
DYD3_k127_5016278_3	1121033.AUCF01000010_gene4572	1.162e-57	204.0	COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2U73Z@28211|Alphaproteobacteria,2JS4R@204441|Rhodospirillales	204441|Rhodospirillales	K	Belongs to the P(II) protein family	glnB	GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772	-	ko:K04751	ko02020,map02020	-	-	-	ko00000,ko00001	-	-	-	P-II
DYD3_k127_5016278_1	1280954.HPO_15141	1.004e-173	553.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TTGJ@28211|Alphaproteobacteria,43ZEJ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	MA20_26420	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
DYD3_k127_5016278_10	1391646.AVSU01000096_gene291	0.0001668	44.0	2BF07@1|root,328RY@2|Bacteria,1UUQA@1239|Firmicutes,257FN@186801|Clostridia	186801|Clostridia	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5016278_4	1122604.JONR01000020_gene459	1.429e-56	211.0	COG0598@1|root,COG0598@2|Bacteria,1MW8W@1224|Proteobacteria,1SX3F@1236|Gammaproteobacteria,1XAUN@135614|Xanthomonadales	135614|Xanthomonadales	P	CorA-like Mg2+ transporter protein	-	-	-	-	-	-	-	-	-	-	-	-	CorA
DYD3_k127_5016278_7	1282876.BAOK01000001_gene2267	9.883e-41	156.0	COG0406@1|root,COG0406@2|Bacteria,1N1G7@1224|Proteobacteria,2UAR0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Phosphoglycerate mutase	-	-	-	-	-	-	-	-	-	-	-	-	His_Phos_1
DYD3_k127_5016278_5	1121861.KB899925_gene2564	6.092e-49	191.0	COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,2TT58@28211|Alphaproteobacteria,2JR4K@204441|Rhodospirillales	204441|Rhodospirillales	G	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	nnrD	-	-	-	-	-	-	-	-	-	-	-	Carb_kinase,YjeF_N
DYD3_k127_5026159_1	1411123.JQNH01000001_gene3568	1.285e-61	215.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSC5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	ABC transporter	MA20_23390	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_5026159_0	713586.KB900536_gene2277	7.51e-86	299.0	COG0842@1|root,COG0842@2|Bacteria,1MUF4@1224|Proteobacteria,1T54P@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	ABC-2 type transporter	-	-	-	-	-	-	-	-	-	-	-	-	ABC2_membrane
DYD3_k127_5026159_3	1380391.JIAS01000014_gene2361	2.664e-50	187.0	COG2930@1|root,COG2930@2|Bacteria,1RHV6@1224|Proteobacteria,2U9N6@28211|Alphaproteobacteria,2JSQS@204441|Rhodospirillales	204441|Rhodospirillales	S	Las17-binding protein actin regulator	-	-	-	-	-	-	-	-	-	-	-	-	Ysc84
DYD3_k127_5026159_6	1089552.KI911559_gene2723	0.0005355	53.0	COG1270@1|root,COG1270@2|Bacteria,1MURM@1224|Proteobacteria,2TRZ8@28211|Alphaproteobacteria,2JQHP@204441|Rhodospirillales	204441|Rhodospirillales	H	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group	cobD	-	6.3.1.10	ko:K02227	ko00860,ko01100,map00860,map01100	M00122	R06529,R07302	RC00090,RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	CobD_Cbib
DYD3_k127_5026159_2	1054213.HMPREF9946_03842	2.211e-53	196.0	COG3921@1|root,COG3921@2|Bacteria,1N3WR@1224|Proteobacteria,2U9V0@28211|Alphaproteobacteria,2JT60@204441|Rhodospirillales	204441|Rhodospirillales	S	Extensin-like protein C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Extensin-like_C
DYD3_k127_5026159_4	1038922.PflQ2_2580	5.714e-49	180.0	COG1733@1|root,COG1733@2|Bacteria,1RA78@1224|Proteobacteria,1RVBJ@1236|Gammaproteobacteria,1YTS6@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_5026159_5	1177181.T9A_02301	1.025e-27	124.0	COG3239@1|root,COG3239@2|Bacteria,1NQ1W@1224|Proteobacteria,1RQTG@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	fatty acid desaturase	-	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase
DYD3_k127_5069227_0	1038858.AXBA01000002_gene3815	2.212e-167	532.0	COG0404@1|root,COG0446@1|root,COG0404@2|Bacteria,COG0446@2|Bacteria,1MVEK@1224|Proteobacteria,2TTD7@28211|Alphaproteobacteria,3EY5H@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Belongs to the GcvT family	soxA	-	1.5.3.1,1.5.99.5	ko:K00302,ko:K22086	ko00260,ko00680,ko01100,ko01120,map00260,map00680,map01100,map01120	-	R00609,R00610	RC00060,RC00190,RC00557	ko00000,ko00001,ko01000	-	-	-	FAD_oxidored,Fer2_4,GCV_T,GCV_T_C,Pyr_redox_2
DYD3_k127_5069227_2	419610.Mext_1651	1.329e-33	138.0	COG4583@1|root,COG4583@2|Bacteria,1N68D@1224|Proteobacteria,2UDJV@28211|Alphaproteobacteria,1JU74@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	Sarcosine oxidase, gamma subunit	-	-	1.5.3.1,1.5.99.5	ko:K00305,ko:K22087	ko00260,ko00680,ko01100,ko01120,map00260,map00680,map01100,map01120	-	R00609,R00610	RC00060,RC00190,RC00557	ko00000,ko00001,ko01000	-	-	-	SoxG
DYD3_k127_5069227_1	1131814.JAFO01000001_gene3000	1.112e-144	463.0	COG0788@1|root,COG0788@2|Bacteria,1MVCF@1224|Proteobacteria,2TR4V@28211|Alphaproteobacteria,3EY8G@335928|Xanthobacteraceae	28211|Alphaproteobacteria	F	Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4)	purU	-	3.5.1.10	ko:K01433	ko00630,ko00670,map00630,map00670	-	R00944	RC00026,RC00111	ko00000,ko00001,ko01000	-	-	-	ACT,Formyl_trans_N
DYD3_k127_5076437_1	414684.RC1_2809	2.043e-113	373.0	COG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,2TQZW@28211|Alphaproteobacteria,2JP8P@204441|Rhodospirillales	204441|Rhodospirillales	J	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34	mnmE	-	-	ko:K03650	-	-	R08701	RC00053,RC00209,RC00870	ko00000,ko01000,ko03016	-	-	-	MMR_HSR1,MnmE_helical,TrmE_N
DYD3_k127_5076437_2	1238182.C882_3230	1.338e-47	173.0	COG3411@1|root,COG3411@2|Bacteria,1MZR4@1224|Proteobacteria,2UAPY@28211|Alphaproteobacteria,2JTIE@204441|Rhodospirillales	204441|Rhodospirillales	C	Ferredoxin, 2Fe-2S	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5076437_4	1121033.AUCF01000003_gene3395	2.2e-20	94.0	COG3266@1|root,COG3266@2|Bacteria,1NC0S@1224|Proteobacteria,2UG0A@28211|Alphaproteobacteria,2JTJC@204441|Rhodospirillales	204441|Rhodospirillales	S	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5076437_0	1121033.AUCF01000003_gene3396	2.851e-246	777.0	COG1331@1|root,COG1331@2|Bacteria,1MUUT@1224|Proteobacteria,2TV0X@28211|Alphaproteobacteria,2JPU1@204441|Rhodospirillales	204441|Rhodospirillales	O	COG1331 Highly conserved protein containing a thioredoxin domain	-	-	-	ko:K06888	-	-	-	-	ko00000	-	-	-	GlcNAc_2-epim,Thioredox_DsbH
DYD3_k127_5076437_3	1244869.H261_08068	3.014e-35	139.0	COG0350@1|root,COG0350@2|Bacteria,1N2YQ@1224|Proteobacteria,2VEUJ@28211|Alphaproteobacteria,2JSQT@204441|Rhodospirillales	204441|Rhodospirillales	L	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated	ogt	-	2.1.1.63	ko:K00567	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_binding_1,Methyltransf_1N
DYD3_k127_5099139_1	331869.BAL199_10912	2.909e-65	234.0	COG1573@1|root,COG1573@2|Bacteria,1MWX1@1224|Proteobacteria,2TT4Q@28211|Alphaproteobacteria,4BQ3Q@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	Uracil DNA glycosylase superfamily	udgA	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_5099139_0	414684.RC1_3182	8.261e-142	456.0	COG0644@1|root,COG2440@1|root,COG0644@2|Bacteria,COG2440@2|Bacteria,1MVU6@1224|Proteobacteria,2TS0R@28211|Alphaproteobacteria,2JPVD@204441|Rhodospirillales	204441|Rhodospirillales	C	Electron transfer flavoprotein-ubiquinone oxidoreductase	-	-	1.5.5.1	ko:K00311	-	-	-	-	ko00000,ko01000	-	-	-	ETF_QO,FAD_binding_2,NAD_binding_8
DYD3_k127_5104153_1	1121106.JQKB01000005_gene2096	2.212e-39	148.0	COG1136@1|root,COG1136@2|Bacteria,1MVSQ@1224|Proteobacteria,2TSBE@28211|Alphaproteobacteria,2JQ7T@204441|Rhodospirillales	204441|Rhodospirillales	V	Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner	lolD	-	-	ko:K09810	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.125	-	-	ABC_tran
DYD3_k127_5104153_0	1207063.P24_10570	1.138e-286	895.0	COG0587@1|root,COG0587@2|Bacteria,1MUIF@1224|Proteobacteria,2TSCN@28211|Alphaproteobacteria,2JP92@204441|Rhodospirillales	204441|Rhodospirillales	L	DNA polymerase	dnaE	-	2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
DYD3_k127_5104588_1	1125973.JNLC01000016_gene2713	1.185e-237	742.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JSVT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase	gabD	GO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0004777,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006105,GO:0006520,GO:0006536,GO:0006538,GO:0006540,GO:0006807,GO:0008150,GO:0008152,GO:0009013,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009448,GO:0009450,GO:0009987,GO:0016054,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0019752,GO:0032787,GO:0036094,GO:0042133,GO:0042135,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	1.2.1.16,1.2.1.20,1.2.1.79	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	M00027	R00713,R00714,R02401	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_5104588_2	991905.SL003B_0718	1.163e-203	642.0	COG0160@1|root,COG0160@2|Bacteria,1MWY6@1224|Proteobacteria,2TUDG@28211|Alphaproteobacteria,4BRE1@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Aminotransferase class-III	-	-	2.6.1.19,2.6.1.22	ko:K07250	ko00250,ko00280,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00280,map00410,map00640,map00650,map01100,map01120	M00027	R00908,R01648,R04188	RC00006,RC00062,RC00160	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_5104588_4	1472716.KBK24_0104205	2.167e-37	145.0	2EFEY@1|root,3397R@2|Bacteria,1N9ZY@1224|Proteobacteria,2W2BA@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5104588_3	395492.Rleg2_4109	2.654e-84	293.0	COG0583@1|root,COG0583@2|Bacteria,1R6I2@1224|Proteobacteria,2U4XA@28211|Alphaproteobacteria,4BIYD@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5104588_0	1121033.AUCF01000004_gene4796	2.444e-287	908.0	COG1215@1|root,COG5309@1|root,COG1215@2|Bacteria,COG5309@2|Bacteria,1MWF8@1224|Proteobacteria,2VEZT@28211|Alphaproteobacteria,2JR2N@204441|Rhodospirillales	204441|Rhodospirillales	M	Glycosyl transferase family group 2	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_17,Glyco_tranf_2_3,Glyco_trans_2_3
DYD3_k127_5122999_1	1380394.JADL01000002_gene1480	3.022e-291	918.0	COG0532@1|root,COG0532@2|Bacteria,1MV26@1224|Proteobacteria,2TQMY@28211|Alphaproteobacteria,2JQK4@204441|Rhodospirillales	204441|Rhodospirillales	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	infB	-	-	ko:K02519	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
DYD3_k127_5122999_11	450851.PHZ_c3435	1.566e-33	135.0	COG0858@1|root,COG0858@2|Bacteria,1MZPE@1224|Proteobacteria,2UCJF@28211|Alphaproteobacteria,2KGRM@204458|Caulobacterales	204458|Caulobacterales	J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA	rbfA	-	-	ko:K02834	-	-	-	-	ko00000,ko03009	-	-	-	RBFA
DYD3_k127_5122999_6	1510531.JQJJ01000010_gene1836	4.048e-73	250.0	COG2606@1|root,COG2606@2|Bacteria,1RD82@1224|Proteobacteria,2U7H0@28211|Alphaproteobacteria,3JQV7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aminoacyl-tRNA editing domain	MA20_06000	-	-	-	-	-	-	-	-	-	-	-	tRNA_edit
DYD3_k127_5122999_7	1144343.PMI41_02725	5.683e-63	218.0	COG1522@1|root,COG1522@2|Bacteria,1RI5D@1224|Proteobacteria,2UBIN@28211|Alphaproteobacteria,43RG5@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	-	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
DYD3_k127_5122999_3	1449065.JMLL01000010_gene544	4.347e-123	402.0	COG0697@1|root,COG0697@2|Bacteria,1MXMS@1224|Proteobacteria,2TUM6@28211|Alphaproteobacteria,43GQX@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_5122999_4	1150626.PHAMO_30064	4.72e-95	321.0	COG0130@1|root,COG0130@2|Bacteria,1MV0N@1224|Proteobacteria,2TSJK@28211|Alphaproteobacteria,2JQHY@204441|Rhodospirillales	204441|Rhodospirillales	J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	truB	-	5.4.99.25	ko:K03177	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	TruB-C_2,TruB_C_2,TruB_N
DYD3_k127_5122999_9	1122963.AUHB01000002_gene837	9.455e-41	151.0	COG0184@1|root,COG0184@2|Bacteria,1MZ2W@1224|Proteobacteria,2UBRZ@28211|Alphaproteobacteria,36YIT@31993|Methylocystaceae	28211|Alphaproteobacteria	J	Ribosomal_S15	rpsO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02956	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S15
DYD3_k127_5122999_0	1244869.H261_08488	0.0	1039.0	COG1185@1|root,COG1185@2|Bacteria,1MVB9@1224|Proteobacteria,2TRH3@28211|Alphaproteobacteria,2JPZ2@204441|Rhodospirillales	204441|Rhodospirillales	J	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction	pnp	-	2.7.7.8	ko:K00962	ko00230,ko00240,ko03018,map00230,map00240,map03018	M00394	R00437,R00438,R00439,R00440	RC02795	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	-	-	-	KH_1,PNPase,RNase_PH,RNase_PH_C,S1
DYD3_k127_5122999_12	1194972.MVAC_09237	0.0005216	51.0	COG5180@1|root,COG5180@2|Bacteria,2GKJ7@201174|Actinobacteria,2330W@1762|Mycobacteriaceae	201174|Actinobacteria	A	pathogenesis	-	-	-	-	-	-	-	-	-	-	-	-	GPDPase_memb
DYD3_k127_5122999_10	62928.azo1264	4.732e-34	150.0	COG2815@1|root,COG2815@2|Bacteria,1N5XX@1224|Proteobacteria,2VXHF@28216|Betaproteobacteria	28216|Betaproteobacteria	L	TIR domain	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
DYD3_k127_5122999_2	1110502.TMO_3547	4.392e-233	728.0	COG2070@1|root,COG2070@2|Bacteria,1N52W@1224|Proteobacteria,2TV8B@28211|Alphaproteobacteria,2JR8X@204441|Rhodospirillales	204441|Rhodospirillales	S	Dioxygenases related to 2-nitropropane dioxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
DYD3_k127_5122999_8	402881.Plav_3637	4.388e-51	190.0	COG0735@1|root,COG0735@2|Bacteria,1RH58@1224|Proteobacteria,2U75R@28211|Alphaproteobacteria,1JP0B@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	Ferric uptake regulator family	-	-	-	ko:K09826	-	-	-	-	ko00000,ko03000	-	-	-	FUR
DYD3_k127_5122999_5	1282876.BAOK01000002_gene64	1.845e-79	270.0	COG1592@1|root,COG1592@2|Bacteria,1R9WG@1224|Proteobacteria,2U5EA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Rubrerythrin	-	-	-	-	-	-	-	-	-	-	-	-	Rubrerythrin
DYD3_k127_5152855_0	1380394.JADL01000009_gene3419	6.982e-143	465.0	COG0626@1|root,COG0626@2|Bacteria,1MU9E@1224|Proteobacteria,2TS8Z@28211|Alphaproteobacteria,2JQ5B@204441|Rhodospirillales	204441|Rhodospirillales	E	COG0626 Cystathionine beta-lyases cystathionine gamma-synthases	metC	-	4.4.1.8	ko:K01760	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R00782,R01286,R02408,R04941	RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
DYD3_k127_5152855_1	366602.Caul_0436	1.708e-43	168.0	COG0477@1|root,COG2814@2|Bacteria,1NAK9@1224|Proteobacteria,2UHZU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EGP	Major facilitator Superfamily	-	-	-	ko:K08369	-	-	-	-	ko00000,ko02000	2.A.1	-	-	MFS_1
DYD3_k127_5172461_2	190650.CC_3083	7.469e-70	241.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NADH flavin oxidoreductase NADH oxidase	-	-	1.5.8.1,1.5.8.2	ko:K00317	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R01588,R02511	RC00185,RC00556,RC00557,RC00732	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN,Pyr_redox_2
DYD3_k127_5172461_5	266834.SMc00694	1.992e-05	49.0	COG3668@1|root,COG3668@2|Bacteria,1N2I9@1224|Proteobacteria,2V0NE@28211|Alphaproteobacteria,4BHQ5@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_5172461_4	1246459.KB898382_gene2789	1.76e-15	80.0	COG3609@1|root,COG3609@2|Bacteria,1NH4F@1224|Proteobacteria,2UWMN@28211|Alphaproteobacteria,4BGXC@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulators containing the CopG Arc MetJ DNA-binding domain	-	-	-	ko:K07746	-	-	-	-	ko00000,ko02048	-	-	-	ParD_antitoxin
DYD3_k127_5172461_0	196490.AUEZ01000121_gene3437	1.893e-118	404.0	COG1613@1|root,COG1613@2|Bacteria,1R61U@1224|Proteobacteria,2U0AH@28211|Alphaproteobacteria,3JXRE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sulfate ABC transporter periplasmic sulfate-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_11
DYD3_k127_5172461_3	1041147.AUFB01000034_gene3560	5.873e-51	187.0	COG4915@1|root,COG4915@2|Bacteria,1RB36@1224|Proteobacteria,2U658@28211|Alphaproteobacteria,4BCT4@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	5-bromo-4-chloroindolyl phosphate hydrolysis protein	-	-	-	-	-	-	-	-	-	-	-	-	Halogen_Hydrol
DYD3_k127_5172461_1	1040986.ATYO01000012_gene5184	5.155e-76	259.0	COG1840@1|root,COG2304@1|root,COG1840@2|Bacteria,COG2304@2|Bacteria,1N0JX@1224|Proteobacteria,2U3UZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	von Willebrand factor type A domain	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	SBP_bac_11,VWA,VWA_3
DYD3_k127_5190820_7	288000.BBta_3392	3.615e-102	347.0	COG3220@1|root,COG3220@2|Bacteria,1MURE@1224|Proteobacteria,2TRZJ@28211|Alphaproteobacteria,3JR0V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0276 family	-	-	-	ko:K09930	-	-	-	-	ko00000	-	-	-	DUF692
DYD3_k127_5190820_11	1123229.AUBC01000004_gene3162	4.019e-28	121.0	COG5572@1|root,COG5572@2|Bacteria,1MZ6Q@1224|Proteobacteria,2UBV0@28211|Alphaproteobacteria,3JZM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted integral membrane protein (DUF2282)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2282
DYD3_k127_5190820_6	318586.Pden_3418	1.927e-111	364.0	COG0684@1|root,COG0684@2|Bacteria,1MUWV@1224|Proteobacteria,2TU1X@28211|Alphaproteobacteria,2PXB3@265|Paracoccus	28211|Alphaproteobacteria	H	Aldolase/RraA	-	-	-	-	-	-	-	-	-	-	-	-	RraA-like
DYD3_k127_5190820_10	216596.RL4422	1.459e-55	205.0	COG3618@1|root,COG3618@2|Bacteria,1RE0Q@1224|Proteobacteria,2U8X1@28211|Alphaproteobacteria,4BDVJ@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
DYD3_k127_5190820_0	1230476.C207_02476	1.026e-310	959.0	COG0129@1|root,COG0129@2|Bacteria,1MV4I@1224|Proteobacteria,2TQRW@28211|Alphaproteobacteria,3JT1Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	Belongs to the IlvD Edd family	MA20_16960	-	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
DYD3_k127_5190820_1	1131814.JAFO01000001_gene3474	4.226e-222	698.0	COG1653@1|root,COG1653@2|Bacteria	2|Bacteria	G	carbohydrate transport	-	-	-	ko:K02027,ko:K10117	ko02010,map02010	M00196,M00207	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.28	-	-	SBP_bac_1,SBP_bac_8
DYD3_k127_5190820_3	1131814.JAFO01000001_gene3475	2.128e-168	533.0	COG1175@1|root,COG1175@2|Bacteria,1MVAP@1224|Proteobacteria,2TSNP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	COG1175 ABC-type sugar transport systems permease components	-	-	-	ko:K02025,ko:K10118	ko02010,map02010	M00196,M00207	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.28	-	-	BPD_transp_1
DYD3_k127_5190820_4	1131814.JAFO01000001_gene3476	1.083e-147	471.0	COG0395@1|root,COG0395@2|Bacteria,1QHIK@1224|Proteobacteria,2U2IY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	ABC-type sugar transport system, permease component	-	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
DYD3_k127_5190820_2	426117.M446_1314	1.012e-171	546.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,1JX24@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	TOBE domain	-	-	3.6.3.20	ko:K05816,ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00198,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.1,3.A.1.1.3	-	-	ABC_tran,TOBE_2
DYD3_k127_5190820_5	1131814.JAFO01000001_gene3478	4.2e-135	439.0	COG0673@1|root,COG0673@2|Bacteria,1MW74@1224|Proteobacteria,2TSFH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_5190820_8	1131814.JAFO01000001_gene3479	6.922e-101	333.0	COG1802@1|root,COG1802@2|Bacteria,1MXNB@1224|Proteobacteria,2TUI3@28211|Alphaproteobacteria,3EZZ7@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_5190820_9	1185652.USDA257_c48550	1.546e-88	301.0	2B6XK@1|root,31ZXI@2|Bacteria,1QZ09@1224|Proteobacteria,2U9WC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4062)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4062
DYD3_k127_5196301_8	1121440.AUMA01000003_gene3113	3.986e-13	81.0	COG3852@1|root,COG3852@2|Bacteria,1NTTH@1224|Proteobacteria,43BN0@68525|delta/epsilon subdivisions,2X702@28221|Deltaproteobacteria,2M9Q8@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_4,Response_reg
DYD3_k127_5196301_3	1268239.PALB_21800	2.968e-53	205.0	COG2200@1|root,COG2200@2|Bacteria,1N299@1224|Proteobacteria,1RX5N@1236|Gammaproteobacteria,2Q2U2@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,Response_reg
DYD3_k127_5196301_1	159450.NH14_24715	3.709e-108	355.0	COG0625@1|root,COG0625@2|Bacteria,1N8XH@1224|Proteobacteria,2VIYW@28216|Betaproteobacteria,1K0R1@119060|Burkholderiaceae	28216|Betaproteobacteria	O	Glutathione S-transferase	gstP	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_3
DYD3_k127_5196301_0	1297865.APJD01000005_gene3904	2.233e-120	389.0	COG4221@1|root,COG4221@2|Bacteria,1PWXN@1224|Proteobacteria,2U2SU@28211|Alphaproteobacteria,3JTFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4336
DYD3_k127_5196301_2	570967.JMLV01000001_gene2974	4.738e-89	302.0	COG1338@1|root,COG1338@2|Bacteria,1MVBU@1224|Proteobacteria,2TT93@28211|Alphaproteobacteria,2JQM5@204441|Rhodospirillales	204441|Rhodospirillales	N	Plays a role in the flagellum-specific transport system	fliP	-	-	ko:K02419	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliP
DYD3_k127_5196301_7	414684.RC1_0887	1.386e-13	78.0	COG3190@1|root,COG3190@2|Bacteria,1QVM6@1224|Proteobacteria,2VCGR@28211|Alphaproteobacteria,2JU6T@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellar biosynthesis protein, FliO	-	-	-	ko:K02418	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliO
DYD3_k127_5196301_6	1316936.K678_00966	1.021e-21	101.0	COG1377@1|root,COG1377@2|Bacteria,1R2RX@1224|Proteobacteria,2TZQX@28211|Alphaproteobacteria,2JZ59@204441|Rhodospirillales	204441|Rhodospirillales	N	homolog of the cytoplasmic domain of flagellar protein FhlB	-	-	-	ko:K04061	-	-	-	-	ko00000,ko02044	-	-	-	Bac_export_2
DYD3_k127_5196301_5	1282876.BAOK01000001_gene1542	5.81e-27	117.0	COG1815@1|root,COG1815@2|Bacteria,1N1G1@1224|Proteobacteria,2UCJ4@28211|Alphaproteobacteria,4BQY6@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flgB	-	-	ko:K02387	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod
DYD3_k127_5196301_4	1161401.ASJA01000004_gene2330	3.798e-51	187.0	COG1558@1|root,COG1558@2|Bacteria,1RHI3@1224|Proteobacteria,2U94I@28211|Alphaproteobacteria,43YB1@69657|Hyphomonadaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgC	GO:0005575,GO:0005623,GO:0009288,GO:0009425,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464	-	ko:K02388	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
DYD3_k127_5203747_10	1123355.JHYO01000004_gene2520	3.426e-37	158.0	COG2982@1|root,COG2982@2|Bacteria,1MUNH@1224|Proteobacteria,2TT0W@28211|Alphaproteobacteria,36Z0K@31993|Methylocystaceae	28211|Alphaproteobacteria	M	AsmA family	asmA	-	-	ko:K07289	-	-	-	-	ko00000	-	-	-	AsmA,AsmA_2
DYD3_k127_5203747_14	1123229.AUBC01000026_gene4082	1.881e-11	66.0	2EFUM@1|root,339KS@2|Bacteria	2|Bacteria	S	Domain of unknown function (DUF4169)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4169
DYD3_k127_5203747_2	414684.RC1_0637	5.605e-180	585.0	COG4232@1|root,COG4233@1|root,COG4232@2|Bacteria,COG4233@2|Bacteria,1MU8W@1224|Proteobacteria,2TTUM@28211|Alphaproteobacteria,2JPUZ@204441|Rhodospirillales	204441|Rhodospirillales	CO	Thiol disulfide interchange protein	dsbD	-	1.8.1.8	ko:K04084,ko:K08344	-	-	-	-	ko00000,ko01000,ko02000,ko03110	5.A.1.1,5.A.1.5	-	-	DsbC,DsbD,Thioredoxin_7
DYD3_k127_5203747_3	1430440.MGMSRv2_0543	4.814e-176	559.0	COG0019@1|root,COG0019@2|Bacteria,1MZ7Y@1224|Proteobacteria,2TSKB@28211|Alphaproteobacteria,2JPWV@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the Orn Lys Arg decarboxylase class-II family	-	-	4.1.1.17	ko:K01581	ko00330,ko00480,ko01100,ko01110,ko01130,map00330,map00480,map01100,map01110,map01130	M00134	R00670	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Orn_Arg_deC_N,Orn_DAP_Arg_deC
DYD3_k127_5203747_6	378806.STAUR_2388	6.604e-82	278.0	COG3576@1|root,COG3576@2|Bacteria,1R8RC@1224|Proteobacteria,430PA@68525|delta/epsilon subdivisions,2WZ68@28221|Deltaproteobacteria,2Z1EX@29|Myxococcales	28221|Deltaproteobacteria	S	Pfam:Pyridox_oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Putative_PNPOx
DYD3_k127_5203747_8	1205680.CAKO01000010_gene3711	3.168e-67	245.0	29BEK@1|root,33TK0@2|Bacteria,1NU7A@1224|Proteobacteria,2UP1S@28211|Alphaproteobacteria,2JWA1@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5203747_15	1430440.MGMSRv2_0211	0.0004045	50.0	COG0845@1|root,COG0845@2|Bacteria,1R2RZ@1224|Proteobacteria,2TZQZ@28211|Alphaproteobacteria,2JX71@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5203747_5	1121861.KB899911_gene1210	3.459e-107	368.0	COG1262@1|root,COG1262@2|Bacteria,1MVJG@1224|Proteobacteria,2U3YM@28211|Alphaproteobacteria,2JR0V@204441|Rhodospirillales	204441|Rhodospirillales	S	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase
DYD3_k127_5203747_7	1049564.TevJSym_ab00630	1.221e-79	281.0	COG0577@1|root,COG0577@2|Bacteria,1QRYR@1224|Proteobacteria,1S0ZU@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	ABC-type antimicrobial peptide transport system, permease component	tagS	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX
DYD3_k127_5203747_9	1121861.KB899911_gene1208	3.79e-54	201.0	COG1136@1|root,COG1136@2|Bacteria,1RCXK@1224|Proteobacteria,2VFA6@28211|Alphaproteobacteria,2JYKQ@204441|Rhodospirillales	204441|Rhodospirillales	V	ATPases associated with a variety of cellular activities	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_5203747_4	1121861.KB899911_gene1207	4.015e-138	457.0	COG2304@1|root,COG2304@2|Bacteria,1MXU0@1224|Proteobacteria,2TU9W@28211|Alphaproteobacteria,2JPGR@204441|Rhodospirillales	204441|Rhodospirillales	S	von Willebrand factor (vWF) type A domain	-	-	-	-	-	-	-	-	-	-	-	-	VWA,VWA_2
DYD3_k127_5203747_13	1430440.MGMSRv2_0216	2.958e-15	85.0	COG2304@1|root,COG2304@2|Bacteria,1MXU0@1224|Proteobacteria,2TU9W@28211|Alphaproteobacteria,2JPGR@204441|Rhodospirillales	204441|Rhodospirillales	S	von Willebrand factor (vWF) type A domain	-	-	-	-	-	-	-	-	-	-	-	-	VWA,VWA_2
DYD3_k127_5203747_12	1121861.KB899911_gene1206	1.901e-25	120.0	COG0790@1|root,COG0790@2|Bacteria	2|Bacteria	S	beta-lactamase activity	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	DUF4034
DYD3_k127_5203747_1	1121861.KB899911_gene1205	1.27e-238	767.0	COG4458@1|root,COG4458@2|Bacteria,1NFU5@1224|Proteobacteria,2TVB9@28211|Alphaproteobacteria,2JQ48@204441|Rhodospirillales	204441|Rhodospirillales	S	Putative bacterial virulence factor	-	-	-	-	-	-	-	-	-	-	-	-	Virul_Fac
DYD3_k127_5203747_0	1121861.KB899911_gene1204	9.882e-316	996.0	COG4457@1|root,COG4457@2|Bacteria,1MVRQ@1224|Proteobacteria,2TV2X@28211|Alphaproteobacteria,2JPT8@204441|Rhodospirillales	204441|Rhodospirillales	S	Virulence factor SrfB	-	-	-	-	-	-	-	-	-	-	-	-	SrfB
DYD3_k127_5210667_6	1304878.AUGD01000008_gene5763	8.101e-123	408.0	COG0582@1|root,COG0582@2|Bacteria,1N2H9@1224|Proteobacteria,2TS7K@28211|Alphaproteobacteria,3JWPB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Arm-DNA-bind_3,Phage_int_SAM_3,Phage_integrase
DYD3_k127_5210667_2	224914.BMEI0109	2.046e-173	555.0	COG1027@1|root,COG1027@2|Bacteria,1R9JY@1224|Proteobacteria,2TVZD@28211|Alphaproteobacteria,1J3FD@118882|Brucellaceae	28211|Alphaproteobacteria	E	Fumarase C C-terminus	aspA	-	4.3.1.1	ko:K01744	ko00250,ko01100,map00250,map01100	-	R00490	RC00316,RC02799	ko00000,ko00001,ko01000	-	-	-	FumaraseC_C,Lyase_1
DYD3_k127_5210667_1	395492.Rleg2_1384	6.481e-178	567.0	COG0673@1|root,COG0673@2|Bacteria,1PCQY@1224|Proteobacteria,2U2FF@28211|Alphaproteobacteria,4BAEP@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, C-terminal alpha/beta domain	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD3_k127_5210667_0	1437448.AZRT01000037_gene3280	4.703e-195	620.0	COG2303@1|root,COG2303@2|Bacteria,1MUK2@1224|Proteobacteria,2U08V@28211|Alphaproteobacteria,1J2DA@118882|Brucellaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N,NAD_binding_8
DYD3_k127_5210667_4	318586.Pden_1087	2.2e-144	480.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,2PV2W@265|Paracoccus	28211|Alphaproteobacteria	E	Belongs to the ABC transporter superfamily	-	-	-	ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1	-	-	ABC_tran,TOBE,TOBE_2
DYD3_k127_5210667_3	1410620.SHLA_36c000350	7.723e-150	478.0	COG0395@1|root,COG0395@2|Bacteria,1MUT9@1224|Proteobacteria,2TRQ0@28211|Alphaproteobacteria,4BAS4@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_37640	-	-	ko:K17317	ko02010,map02010	M00605	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.24,3.A.1.1.30	-	-	BPD_transp_1
DYD3_k127_5210667_5	412597.AEPN01000027_gene418	5.393e-139	447.0	COG1175@1|root,COG1175@2|Bacteria,1MU84@1224|Proteobacteria,2TRM5@28211|Alphaproteobacteria,2PWFU@265|Paracoccus	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K17316	ko02010,map02010	M00605	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.24,3.A.1.1.30	-	-	BPD_transp_1
DYD3_k127_5216499_8	469383.Cwoe_5682	1.135e-28	120.0	COG2329@1|root,COG2329@2|Bacteria,2IQBH@201174|Actinobacteria	201174|Actinobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_5216499_9	1177928.TH2_01475	1.47e-07	58.0	2DSUE@1|root,33HG2@2|Bacteria,1NQD8@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5216499_4	414684.RC1_1151	2.444e-46	173.0	COG0494@1|root,COG0494@2|Bacteria,1RDMW@1224|Proteobacteria,2TTKQ@28211|Alphaproteobacteria,2JSKP@204441|Rhodospirillales	204441|Rhodospirillales	L	COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	nudF	-	3.6.1.13	ko:K01515	ko00230,map00230	-	R01054	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX
DYD3_k127_5216499_0	1121033.AUCF01000001_gene1955	4.146e-172	544.0	COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,2TR4W@28211|Alphaproteobacteria,2JQ5I@204441|Rhodospirillales	204441|Rhodospirillales	E	Cysteine synthase	cysB	-	2.5.1.47	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R03601,R04859	RC00020,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
DYD3_k127_5216499_1	1316936.K678_07517	7.122e-118	385.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,2JQM2@204441|Rhodospirillales	204441|Rhodospirillales	P	Sulfurtransferase	-	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
DYD3_k127_5216499_5	1333998.M2A_0531	1.822e-44	173.0	COG0454@1|root,COG0454@2|Bacteria,1RDGT@1224|Proteobacteria,2TRF5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD3_k127_5216499_6	1380391.JIAS01000015_gene87	7.039e-42	157.0	COG0346@1|root,COG0346@2|Bacteria,1N3K0@1224|Proteobacteria,2UIW1@28211|Alphaproteobacteria,2JXAR@204441|Rhodospirillales	204441|Rhodospirillales	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5216499_7	557599.MKAN_23670	4.65e-31	128.0	COG5470@1|root,COG5470@2|Bacteria,2IQEX@201174|Actinobacteria,23AKN@1762|Mycobacteriaceae	201174|Actinobacteria	S	Domain of unknown function (DUF1330)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1330
DYD3_k127_5216499_2	1437448.AZRT01000063_gene2803	3.887e-102	342.0	COG3221@1|root,COG3221@2|Bacteria,1R5AR@1224|Proteobacteria,2U2X1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	COG3221 ABC-type phosphate phosphonate transport system, periplasmic component	-	-	-	ko:K02044	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.9	-	-	Phosphonate-bd
DYD3_k127_5216499_3	1123072.AUDH01000008_gene288	6.565e-85	291.0	COG3638@1|root,COG3638@2|Bacteria,1MVE9@1224|Proteobacteria,2U4UY@28211|Alphaproteobacteria,2JWG9@204441|Rhodospirillales	204441|Rhodospirillales	P	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
DYD3_k127_5239033_6	627192.SLG_20240	2.862e-27	117.0	COG0125@1|root,COG0125@2|Bacteria,1MV9C@1224|Proteobacteria,2U72D@28211|Alphaproteobacteria,2K3VU@204457|Sphingomonadales	204457|Sphingomonadales	F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis	tmk	-	2.7.4.9	ko:K00943	ko00240,ko01100,map00240,map01100	M00053	R02094,R02098	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylate_kin
DYD3_k127_5239033_2	1121033.AUCF01000001_gene2238	5.049e-128	420.0	COG1686@1|root,COG1686@2|Bacteria,1MUU7@1224|Proteobacteria,2TS1P@28211|Alphaproteobacteria,2JQF3@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the peptidase S11 family	dacA	-	3.4.16.4	ko:K07258	ko00550,ko01100,map00550,map01100	-	-	-	ko00000,ko00001,ko01000,ko01002,ko01011	-	-	-	PBP5_C,Peptidase_S11
DYD3_k127_5239033_5	1316936.K678_04547	2.99e-70	250.0	COG0797@1|root,COG3087@1|root,COG0797@2|Bacteria,COG3087@2|Bacteria,1MZ8S@1224|Proteobacteria,2TUER@28211|Alphaproteobacteria,2JQ68@204441|Rhodospirillales	204441|Rhodospirillales	M	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	rlpA	-	-	ko:K03642	-	-	-	-	ko00000	-	-	-	DPBB_1,SPOR
DYD3_k127_5239033_3	414684.RC1_1165	4.178e-105	351.0	COG2951@1|root,COG2951@2|Bacteria,1MUZ3@1224|Proteobacteria,2TRP0@28211|Alphaproteobacteria,2JPCF@204441|Rhodospirillales	204441|Rhodospirillales	M	Lytic murein transglycosylase	mltB	-	-	ko:K08305	-	-	-	-	ko00000,ko01000,ko01011	-	GH103	-	PG_binding_1,SLT_2
DYD3_k127_5239033_0	402881.Plav_3107	2.247e-159	514.0	COG2079@1|root,COG2079@2|Bacteria,1R5UM@1224|Proteobacteria,2U1F8@28211|Alphaproteobacteria,1JP1J@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	MmgE/PrpD family	-	-	-	-	-	-	-	-	-	-	-	-	MmgE_PrpD
DYD3_k127_5239033_1	1245469.S58_42500	1.689e-135	444.0	COG0778@1|root,COG0778@2|Bacteria,1NTK9@1224|Proteobacteria,2TR3E@28211|Alphaproteobacteria,3JV2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
DYD3_k127_5239033_4	1207063.P24_03111	2.345e-85	291.0	28N1N@1|root,2ZB7Q@2|Bacteria,1R86T@1224|Proteobacteria,2U0A6@28211|Alphaproteobacteria,2JRMI@204441|Rhodospirillales	204441|Rhodospirillales	H	Sulfotransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_1
DYD3_k127_5242378_3	1125973.JNLC01000012_gene758	2.787e-53	192.0	2CQ1K@1|root,32SKA@2|Bacteria,1N4AR@1224|Proteobacteria,2UDMX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctB family	-	-	-	ko:K07794	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctB
DYD3_k127_5242378_0	1125973.JNLC01000012_gene757	3.859e-271	840.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,3JVYZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctA family	-	-	-	ko:K07793	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctA
DYD3_k127_5242378_1	1229780.BN381_250088	6.764e-126	419.0	COG1020@1|root,COG1020@2|Bacteria,2GKGU@201174|Actinobacteria	201174|Actinobacteria	I	Belongs to the long-chain O-acyltransferase family	-	GO:0000302,GO:0001666,GO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009628,GO:0009987,GO:0010035,GO:0016020,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019432,GO:0030312,GO:0036293,GO:0040007,GO:0042221,GO:0042493,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044419,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0047196,GO:0050896,GO:0051704,GO:0070482,GO:0071704,GO:0071731,GO:0071944,GO:0097366,GO:1901576,GO:1901698,GO:1901700	2.3.1.20	ko:K00635	ko00561,ko01100,map00561,map01100	M00089	R02251	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF1298,WES_acyltransf
DYD3_k127_5242378_2	1333998.M2A_2724	1.941e-69	244.0	COG1028@1|root,COG1028@2|Bacteria,1MWJQ@1224|Proteobacteria,2TVRP@28211|Alphaproteobacteria,4BQ0W@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_5242539_1	1449049.JONW01000010_gene3742	1.79e-179	571.0	COG0183@1|root,COG0183@2|Bacteria,1QUU1@1224|Proteobacteria,2U0EW@28211|Alphaproteobacteria,2KI5V@204458|Caulobacterales	204458|Caulobacterales	I	Belongs to the thiolase family	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	-
DYD3_k127_5242539_3	1335760.ASTG01000016_gene139	6.992e-39	153.0	COG1309@1|root,COG1309@2|Bacteria,1RJ2K@1224|Proteobacteria,2UD90@28211|Alphaproteobacteria,2KC7D@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_5242539_4	347834.RHE_CH03309	7.174e-36	140.0	COG3813@1|root,COG3813@2|Bacteria,1N712@1224|Proteobacteria,2UFME@28211|Alphaproteobacteria,4BG6B@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	MA20_39405	-	-	ko:K09984	-	-	-	-	ko00000	-	-	-	DUF1272
DYD3_k127_5242539_0	1120792.JAFV01000001_gene383	1.902e-196	619.0	COG2141@1|root,COG2141@2|Bacteria,1MWMV@1224|Proteobacteria,2TTIQ@28211|Alphaproteobacteria,36Z3U@31993|Methylocystaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	ssuD	-	1.14.14.5	ko:K04091	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
DYD3_k127_5242539_2	1121033.AUCF01000004_gene4811	6.824e-121	397.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TU4J@28211|Alphaproteobacteria,2JR4J@204441|Rhodospirillales	204441|Rhodospirillales	P	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K15553	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	NMT1
DYD3_k127_5264857_4	985867.AEWF01000006_gene584	9.945e-73	264.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,47G52@766|Rickettsiales	766|Rickettsiales	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal,dCache_1
DYD3_k127_5264857_7	883080.HMPREF9697_03406	5.312e-32	130.0	COG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,2UBUP@28211|Alphaproteobacteria,3JYP6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Important for reducing fluoride concentration in the cell, thus reducing its toxicity	crcB	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425	-	ko:K06199	-	-	-	-	ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3	-	-	CRCB
DYD3_k127_5264857_3	1380394.JADL01000007_gene4677	1.202e-105	358.0	COG0564@1|root,COG0564@2|Bacteria,1MVDX@1224|Proteobacteria,2TTQC@28211|Alphaproteobacteria,2JPRV@204441|Rhodospirillales	204441|Rhodospirillales	J	Responsible for synthesis of pseudouridine from uracil	rluC	-	5.4.99.24	ko:K06179	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD3_k127_5264857_5	1317124.DW2_06338	1.136e-59	214.0	COG5387@1|root,COG5387@2|Bacteria,1Q3B5@1224|Proteobacteria,2TVK1@28211|Alphaproteobacteria,2XM8A@285107|Thioclava	28211|Alphaproteobacteria	O	ATP12 chaperone protein	-	-	-	-	-	-	-	-	-	-	-	-	ATP12
DYD3_k127_5264857_6	1240349.ANGC01000005_gene1550	5.827e-39	151.0	COG0454@1|root,COG0456@2|Bacteria,2II3I@201174|Actinobacteria,4G1E4@85025|Nocardiaceae	201174|Actinobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_7
DYD3_k127_5264857_2	1121271.AUCM01000010_gene2430	9.112e-276	854.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2TRI1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)	pccB	-	2.1.3.15,6.4.1.3	ko:K01966	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00373,M00741	R01859	RC00097,RC00609	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
DYD3_k127_5264857_1	861208.AGROH133_11875	9.244e-287	894.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,4B8KC@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	propionyl-CoA carboxylase	pccA	GO:0003674,GO:0003824,GO:0004658,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009374,GO:0009987,GO:0016421,GO:0016874,GO:0016885,GO:0017144,GO:0019752,GO:0019842,GO:0019899,GO:0031406,GO:0031974,GO:0032787,GO:0033218,GO:0033293,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901681	6.4.1.3	ko:K01965	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00373,M00741	R01859	RC00097,RC00609	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
DYD3_k127_5264857_8	438753.AZC_2316	1.133e-23	105.0	COG1254@1|root,COG1254@2|Bacteria,1PU46@1224|Proteobacteria,2UF7Z@28211|Alphaproteobacteria,3F02C@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Acylphosphatase	acyP	GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818	3.6.1.7	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	-	R00317,R01421,R01515	RC00043	ko00000,ko00001,ko01000	-	-	-	Acylphosphatase
DYD3_k127_5264857_0	1267005.KB911256_gene1605	0.0	1219.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_5269168_4	1470593.BW43_03482	2.475e-34	133.0	COG0596@1|root,COG0596@2|Bacteria,1MWT6@1224|Proteobacteria,1RMFA@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_5269168_0	1207063.P24_04774	8.568e-166	534.0	COG2262@1|root,COG2262@2|Bacteria,1MUA0@1224|Proteobacteria,2TUXJ@28211|Alphaproteobacteria,2JPKB@204441|Rhodospirillales	204441|Rhodospirillales	S	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis	hflX	-	-	ko:K03665	-	-	-	-	ko00000,ko03009	-	-	-	GTP-bdg_M,GTP-bdg_N,MMR_HSR1
DYD3_k127_5269168_3	1177928.TH2_13894	4.87e-39	147.0	COG1923@1|root,COG1923@2|Bacteria,1MZM1@1224|Proteobacteria,2UBTW@28211|Alphaproteobacteria,2JTD7@204441|Rhodospirillales	204441|Rhodospirillales	J	RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs	hfq	-	-	ko:K03666	ko02024,ko03018,ko05111,map02024,map03018,map05111	-	-	-	ko00000,ko00001,ko03019,ko03036	-	-	-	Hfq
DYD3_k127_5269168_5	596153.Alide_0098	1.433e-06	61.0	2AEYP@1|root,314WM@2|Bacteria,1PUUR@1224|Proteobacteria,2W5RB@28216|Betaproteobacteria,4AIKP@80864|Comamonadaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5269168_2	1523503.JPMY01000037_gene1801	9.316e-148	480.0	COG3182@1|root,COG3182@2|Bacteria,1MW2S@1224|Proteobacteria,1S0GC@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
DYD3_k127_5269168_1	1249627.D779_3001	2.9e-154	511.0	COG1629@1|root,COG4771@2|Bacteria,1MWKN@1224|Proteobacteria,1RNZX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	receptor	viuA	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
DYD3_k127_5277582_0	1125973.JNLC01000013_gene3914	0.0	1325.0	COG0404@1|root,COG0446@1|root,COG0404@2|Bacteria,COG0446@2|Bacteria,1MVEK@1224|Proteobacteria,2TTD7@28211|Alphaproteobacteria,3JTMR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glycine cleavage T-protein C-terminal barrel domain	-	-	1.5.3.1	ko:K00302	ko00260,ko01100,map00260,map01100	-	R00610	RC00060,RC00557	ko00000,ko00001,ko01000	-	-	-	FAD_oxidored,Fer2_4,GCV_T,GCV_T_C,Pyr_redox_2
DYD3_k127_5277582_2	1125973.JNLC01000013_gene3913	3.611e-41	158.0	COG4583@1|root,COG4583@2|Bacteria,1N27A@1224|Proteobacteria,2UD7S@28211|Alphaproteobacteria,3K16T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Sarcosine oxidase, gamma subunit family	soxG	-	1.5.3.1	ko:K00305	ko00260,ko01100,map00260,map01100	-	R00610	RC00060,RC00557	ko00000,ko00001,ko01000	-	-	-	SoxG
DYD3_k127_5277582_1	391165.GbCGDNIH1_0078	1.149e-190	604.0	COG1760@1|root,COG1760@2|Bacteria,1MUZN@1224|Proteobacteria,2TR3D@28211|Alphaproteobacteria,2JQT3@204441|Rhodospirillales	204441|Rhodospirillales	E	Serine dehydratase beta chain	-	-	4.3.1.17	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	-	R00220,R00590	RC00331,RC02600	ko00000,ko00001,ko01000	-	-	-	SDH_alpha,SDH_beta
DYD3_k127_5279976_3	582899.Hden_2237	1.449e-25	108.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,3N62A@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	I	Carbamoyl-phosphate synthase L chain ATP-binding	pccA	GO:0003674,GO:0003824,GO:0004658,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009374,GO:0009987,GO:0016421,GO:0016874,GO:0016885,GO:0017144,GO:0019752,GO:0019842,GO:0019899,GO:0031406,GO:0031974,GO:0032787,GO:0033218,GO:0033293,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901681	6.4.1.3	ko:K01965	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00373,M00741	R01859	RC00097,RC00609	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
DYD3_k127_5279976_2	1123261.AXDW01000008_gene888	1.132e-106	351.0	COG3665@1|root,COG3665@2|Bacteria,1N9DM@1224|Proteobacteria,1RR1E@1236|Gammaproteobacteria,1X6FM@135614|Xanthomonadales	135614|Xanthomonadales	S	Domain of unknown function (DUF1989)	-	-	-	ko:K09967	-	-	-	-	ko00000	-	-	-	DUF1989
DYD3_k127_5279976_1	1123261.AXDW01000008_gene887	9.877e-108	355.0	COG3665@1|root,COG3665@2|Bacteria,1N2KR@1224|Proteobacteria,1RN5H@1236|Gammaproteobacteria,1XAAA@135614|Xanthomonadales	135614|Xanthomonadales	S	Domain of unknown function (DUF1989)	-	-	-	ko:K09967	-	-	-	-	ko00000	-	-	-	DUF1989
DYD3_k127_5279976_0	1131814.JAFO01000001_gene3423	6.899e-119	387.0	COG1116@1|root,COG1116@2|Bacteria,1MWZG@1224|Proteobacteria,2TT79@28211|Alphaproteobacteria,3EXUV@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_528369_5	1316936.K678_14132	1.347e-61	216.0	COG2003@1|root,COG2003@2|Bacteria,1MXZ5@1224|Proteobacteria,2TQXM@28211|Alphaproteobacteria,2JRVR@204441|Rhodospirillales	204441|Rhodospirillales	L	Belongs to the UPF0758 family	-	-	-	ko:K03630	-	-	-	-	ko00000	-	-	-	RadC
DYD3_k127_528369_6	93220.LV28_03315	2.103e-56	207.0	COG1877@1|root,COG1877@2|Bacteria,1RGY2@1224|Proteobacteria,2VRQ8@28216|Betaproteobacteria,1K3QP@119060|Burkholderiaceae	28216|Betaproteobacteria	G	Removes the phosphate from trehalose 6-phosphate to produce free trehalose	otsB	-	3.1.3.12	ko:K01087	ko00500,ko01100,map00500,map01100	-	R02778	RC00017	ko00000,ko00001,ko01000	-	-	-	Trehalose_PPase
DYD3_k127_528369_0	570967.JMLV01000013_gene3393	2.479e-241	771.0	COG3387@1|root,COG3387@2|Bacteria,1MV08@1224|Proteobacteria,2TRMQ@28211|Alphaproteobacteria,2JQKZ@204441|Rhodospirillales	204441|Rhodospirillales	G	Glycosyl hydrolases family 15	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_15
DYD3_k127_528369_2	1054213.HMPREF9946_03761	1.64e-162	524.0	COG0380@1|root,COG0380@2|Bacteria,1MUIY@1224|Proteobacteria,2TQMP@28211|Alphaproteobacteria,2JPVA@204441|Rhodospirillales	204441|Rhodospirillales	G	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor	otsA	-	2.4.1.15,2.4.1.347	ko:K00697	ko00500,ko01100,map00500,map01100	-	R02737	RC00005,RC00049,RC02748	ko00000,ko00001,ko01000,ko01003	-	GT20	-	Glyco_transf_20
DYD3_k127_528369_3	717785.HYPMC_2461	6.092e-129	423.0	COG0668@1|root,COG1615@1|root,COG0668@2|Bacteria,COG1615@2|Bacteria,1MW7V@1224|Proteobacteria,2TT0A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	mechanosensitive ion channel	-	-	-	-	-	-	-	-	-	-	-	-	MS_channel
DYD3_k127_528369_7	69279.BG36_12570	6.967e-33	132.0	COG2050@1|root,COG2050@2|Bacteria,1RGVD@1224|Proteobacteria,2UBM9@28211|Alphaproteobacteria,43JSN@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	Q	protein possibly involved in aromatic compounds catabolism	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_528369_1	1379701.JPJC01000252_gene1881	2.276e-220	690.0	COG0015@1|root,COG0015@2|Bacteria,1MV4B@1224|Proteobacteria,2TQUE@28211|Alphaproteobacteria,2K0GV@204457|Sphingomonadales	204457|Sphingomonadales	F	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	purB	-	4.3.2.2	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048,M00049	R01083,R04559	RC00379,RC00444,RC00445	ko00000,ko00001,ko00002,ko01000	-	-	-	ADSL_C,Lyase_1
DYD3_k127_528369_4	1501230.ET33_33360	3.359e-108	362.0	COG0477@1|root,COG2814@2|Bacteria,1TS0E@1239|Firmicutes,4HCEF@91061|Bacilli,26S5E@186822|Paenibacillaceae	91061|Bacilli	EGP	Permeases of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
DYD3_k127_5284356_12	1384054.N790_01995	4.107e-09	57.0	COG3000@1|root,COG3000@2|Bacteria,1QU0E@1224|Proteobacteria,1TMF5@1236|Gammaproteobacteria,1XBP6@135614|Xanthomonadales	135614|Xanthomonadales	I	Protein of unknown function (DUF3703)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3703
DYD3_k127_5284356_5	876044.IMCC3088_901	1.066e-81	279.0	COG2050@1|root,COG2050@2|Bacteria,1QVFN@1224|Proteobacteria,1T2G5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	Thioesterase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
DYD3_k127_5284356_10	267608.RSp1119	1.356e-65	230.0	COG1733@1|root,COG1733@2|Bacteria,1RF0R@1224|Proteobacteria,2VV10@28216|Betaproteobacteria,1KHWA@119060|Burkholderiaceae	28216|Betaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_5284356_4	1125973.JNLC01000016_gene2964	6.23e-104	348.0	COG0030@1|root,COG0030@2|Bacteria,1MVNU@1224|Proteobacteria,2TRD9@28211|Alphaproteobacteria,3JS7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	ksgA	GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.182	ko:K02528	-	-	R10716	RC00003,RC03257	ko00000,ko01000,ko03009	-	-	-	RrnaAD
DYD3_k127_5284356_3	1207063.P24_09356	4.133e-119	392.0	COG1995@1|root,COG1995@2|Bacteria,1MX5W@1224|Proteobacteria,2TSKF@28211|Alphaproteobacteria,2JPW9@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)	pdxA	-	1.1.1.262	ko:K00097	ko00750,ko01100,map00750,map01100	M00124	R05681,R05837,R07406	RC00089,RC00675,RC01475	ko00000,ko00001,ko00002,ko01000	-	-	-	PdxA
DYD3_k127_5284356_9	414684.RC1_1563	5.552e-69	259.0	COG0760@1|root,COG0760@2|Bacteria,1MVB3@1224|Proteobacteria,2TSJ3@28211|Alphaproteobacteria,2JQQD@204441|Rhodospirillales	204441|Rhodospirillales	O	Chaperone SurA	surA	-	5.2.1.8	ko:K03771	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase,SurA_N,SurA_N_3
DYD3_k127_5284356_2	331869.BAL199_23644	4.435e-164	543.0	COG1452@1|root,COG1452@2|Bacteria,1MUJC@1224|Proteobacteria,2TR3B@28211|Alphaproteobacteria,4BPIV@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane	lptD	-	-	ko:K04744	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	OstA,OstA_C
DYD3_k127_5284356_7	414684.RC1_1564	1.805e-79	286.0	COG0795@1|root,COG0795@2|Bacteria,1MVW3@1224|Proteobacteria,2TR76@28211|Alphaproteobacteria,2JPJ2@204441|Rhodospirillales	204441|Rhodospirillales	S	Predicted permease YjgP/YjgQ family	-	-	-	ko:K11720	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko02000	1.B.42.1	-	-	YjgP_YjgQ
DYD3_k127_5284356_8	1110502.TMO_1847	2.371e-71	255.0	COG0795@1|root,COG0795@2|Bacteria,1MUF2@1224|Proteobacteria,2TQUB@28211|Alphaproteobacteria,2JP9K@204441|Rhodospirillales	204441|Rhodospirillales	S	Predicted permease YjgP/YjgQ family	-	-	-	ko:K07091	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko02000	1.B.42.1	-	-	YjgP_YjgQ
DYD3_k127_5284356_6	1238182.C882_2417	5.834e-80	286.0	COG1807@1|root,COG1807@2|Bacteria,1P6JE@1224|Proteobacteria,2TV39@28211|Alphaproteobacteria,2JR6C@204441|Rhodospirillales	204441|Rhodospirillales	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
DYD3_k127_5284356_1	1430440.MGMSRv2_4003	6.822e-206	651.0	COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,2TQU9@28211|Alphaproteobacteria,2JPEV@204441|Rhodospirillales	204441|Rhodospirillales	E	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	pepA	-	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17,Peptidase_M17_N
DYD3_k127_5284356_11	1316936.K678_05998	7.776e-47	172.0	COG2927@1|root,COG2927@2|Bacteria,1RGVC@1224|Proteobacteria,2U94V@28211|Alphaproteobacteria,2JSPN@204441|Rhodospirillales	204441|Rhodospirillales	L	DNA polymerase III, chi subunit	holC	-	2.7.7.7	ko:K02339	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_chi
DYD3_k127_5284356_0	450851.PHZ_c1807	8.259e-242	764.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria,2KIUB@204458|Caulobacterales	204458|Caulobacterales	C	Flavin-binding monooxygenase-like	-	-	1.14.13.84	ko:K14520	ko00363,ko01100,ko01120,map00363,map01100,map01120	-	R06892	RC01644	ko00000,ko00001,ko01000	-	-	-	-
DYD3_k127_5284356_13	570952.ATVH01000017_gene1604	2.259e-05	49.0	2BUMS@1|root,32PYG@2|Bacteria,1NHFD@1224|Proteobacteria,2UJC2@28211|Alphaproteobacteria,2JY3F@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5288424_2	69395.JQLZ01000002_gene1071	3.343e-43	162.0	COG0550@1|root,COG1754@1|root,COG0550@2|Bacteria,COG1754@2|Bacteria,1MUFZ@1224|Proteobacteria,2TRGN@28211|Alphaproteobacteria,2KF1P@204458|Caulobacterales	204458|Caulobacterales	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	topA	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	Topoisom_bac,Toprim,Toprim_C_rpt,zf-C4_Topoisom
DYD3_k127_5288424_0	402881.Plav_2830	1.185e-238	764.0	COG0557@1|root,COG0557@2|Bacteria,1MUS6@1224|Proteobacteria,2TRC1@28211|Alphaproteobacteria,1JN2R@119043|Rhodobiaceae	28211|Alphaproteobacteria	J	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	rnr	GO:0000175,GO:0003674,GO:0003724,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008408,GO:0008997,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016896,GO:0017111,GO:0019222,GO:0019439,GO:0034458,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575	-	ko:K12573	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	RNB,S1
DYD3_k127_5288424_1	1408224.SAMCCGM7_c4450	3.049e-133	439.0	COG1167@1|root,COG1167@2|Bacteria,1MUJE@1224|Proteobacteria,2TQZZ@28211|Alphaproteobacteria,4BBU5@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	gntR family	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
DYD3_k127_5288424_3	1267005.KB911260_gene3576	1.412e-41	164.0	COG5349@1|root,COG5349@2|Bacteria,1MZDD@1224|Proteobacteria,2UCM4@28211|Alphaproteobacteria,3N74I@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF983)	-	-	-	-	-	-	-	-	-	-	-	-	DUF983
DYD3_k127_5288424_6	1187851.A33M_4307	4.265e-09	57.0	COG2827@1|root,COG2827@2|Bacteria,1MZME@1224|Proteobacteria,2UCNX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	PFAM Excinuclease ABC, C subunit domain protein	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
DYD3_k127_5288424_4	1500257.JQNM01000001_gene4013	3.646e-18	86.0	COG2827@1|root,COG2827@2|Bacteria,1MZME@1224|Proteobacteria,2UCNX@28211|Alphaproteobacteria,4BFB7@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Excinuclease ABC C subunit	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
DYD3_k127_5320887_7	1957.JODX01000035_gene122	5.098e-08	60.0	COG1368@1|root,COG1368@2|Bacteria,2GKS9@201174|Actinobacteria	201174|Actinobacteria	M	sulfuric ester hydrolase activity	-	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
DYD3_k127_5320887_1	690585.JNNU01000028_gene2322	1.941e-77	267.0	COG2520@1|root,COG2520@2|Bacteria,1QZZE@1224|Proteobacteria,2TYVD@28211|Alphaproteobacteria,4BNYK@82115|Rhizobiaceae	28211|Alphaproteobacteria	J	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
DYD3_k127_5320887_4	1336235.JAEG01000002_gene79	3.278e-42	164.0	COG0558@1|root,COG0558@2|Bacteria,1N1AE@1224|Proteobacteria,2UCWB@28211|Alphaproteobacteria,4B981@82115|Rhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	-	-	-	-	-	-	-	-	-	-	-	-	CDP-OH_P_transf
DYD3_k127_5320887_0	1123504.JQKD01000008_gene5342	1.024e-112	372.0	COG1063@1|root,COG1063@2|Bacteria,1MW7C@1224|Proteobacteria,2VN30@28216|Betaproteobacteria,4AHH9@80864|Comamonadaceae	28216|Betaproteobacteria	E	COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5320887_2	314231.FP2506_06291	1.283e-57	206.0	COG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2UBYU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	cytochrome b561	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB,YceI
DYD3_k127_5320887_3	488538.SAR116_2222	1.412e-53	202.0	COG2215@1|root,COG2215@2|Bacteria,1MWIW@1224|Proteobacteria,2TSIM@28211|Alphaproteobacteria,4BQW0@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	High-affinity nickel-transport protein	-	-	-	ko:K08970	-	-	-	-	ko00000,ko02000	2.A.52.2	-	-	NicO
DYD3_k127_5320887_5	1437824.BN940_06076	3.223e-39	154.0	COG3683@1|root,COG3683@2|Bacteria,1R4QA@1224|Proteobacteria,2WG4T@28216|Betaproteobacteria,3T854@506|Alcaligenaceae	28216|Betaproteobacteria	S	Protein of unknown function (DUF1007)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1007
DYD3_k127_5320887_6	1457250.BBMO01000001_gene1502	2.752e-16	83.0	COG2244@1|root,arCOG02209@2157|Archaea,2XU81@28890|Euryarchaeota,23T6Q@183963|Halobacteria	183963|Halobacteria	S	COG2244 Membrane protein involved in the export of O-antigen and teichoic acid	-	-	-	ko:K03328,ko:K16695	-	-	-	-	ko00000,ko02000	2.A.66.2,2.A.66.2.7	-	-	Polysacc_synt_3,Polysacc_synt_C
DYD3_k127_5327890_1	745277.GRAQ_00844	8.925e-178	569.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,1RR6Q@1236|Gammaproteobacteria,3FH8Q@34037|Rahnella	1236|Gammaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_5327890_0	861208.AGROH133_10361	8.776e-279	871.0	COG2936@1|root,COG2936@2|Bacteria,1MVA8@1224|Proteobacteria,2TU0R@28211|Alphaproteobacteria,4B7Q4@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain	-	-	-	ko:K06978	-	-	-	-	ko00000	-	-	-	PepX_C,Peptidase_S15
DYD3_k127_5327890_2	1397528.Q671_11470	5.104e-102	343.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,1RZQH@1236|Gammaproteobacteria,1XNA4@135619|Oceanospirillales	135619|Oceanospirillales	K	transcriptional regulator	cdhR	-	-	ko:K17736	-	-	-	-	ko00000,ko03000	-	-	-	DJ-1_PfpI,HTH_18
DYD3_k127_535930_11	1054213.HMPREF9946_05195	4.693e-56	204.0	COG1429@1|root,COG1429@2|Bacteria,1MU5W@1224|Proteobacteria,2TQVD@28211|Alphaproteobacteria,2JQI4@204441|Rhodospirillales	204441|Rhodospirillales	H	COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases	cobN	-	6.6.1.2	ko:K02230	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobN-Mg_chel
DYD3_k127_535930_2	1336208.JADY01000001_gene795	2.88e-144	470.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TQWN@28211|Alphaproteobacteria,2JQ7F@204441|Rhodospirillales	204441|Rhodospirillales	S	Cobalamin synthesis protein cobW C-terminal domain	-	-	-	ko:K02234	-	-	-	-	ko00000,ko00001	-	-	-	CobW_C,cobW
DYD3_k127_535930_13	178901.AmDm5_0424	1.134e-24	111.0	COG5469@1|root,COG5469@2|Bacteria,1N7P8@1224|Proteobacteria,2UAEU@28211|Alphaproteobacteria,2JTTE@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1636)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1636
DYD3_k127_535930_8	1231185.BAMP01000146_gene369	6.119e-96	318.0	COG2109@1|root,COG2109@2|Bacteria,1MUN6@1224|Proteobacteria,2TT92@28211|Alphaproteobacteria,43GZ3@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	H	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids	cobO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.5.1.17	ko:K19221	ko00860,ko01100,map00860,map01100	M00122	R01492,R05220,R07268	RC00533	ko00000,ko00001,ko00002,ko01000	-	-	-	Co_AT_N,CobA_CobO_BtuR
DYD3_k127_535930_0	1217720.ALOX01000088_gene3071	4.892e-215	685.0	COG1492@1|root,COG1492@2|Bacteria,1MUFY@1224|Proteobacteria,2TRHI@28211|Alphaproteobacteria,2JPDZ@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation	cobQ	-	6.3.5.10	ko:K02232	ko00860,ko01100,map00860,map01100	M00122	R05225	RC00010,RC01302	ko00000,ko00001,ko00002,ko01000	-	-	-	AAA_26,CbiA,GATase_3
DYD3_k127_535930_7	1538295.JY96_19375	1.645e-105	351.0	COG3239@1|root,COG3239@2|Bacteria,1MUHK@1224|Proteobacteria,2VSCY@28216|Betaproteobacteria,1KMN1@119065|unclassified Burkholderiales	28216|Betaproteobacteria	I	Fatty acid desaturase	-	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase
DYD3_k127_535930_9	338969.Rfer_0524	1.551e-83	300.0	COG3327@1|root,COG3327@2|Bacteria,1RABS@1224|Proteobacteria,2VS49@28216|Betaproteobacteria,4AGRP@80864|Comamonadaceae	28216|Betaproteobacteria	K	PaaX-like protein C-terminal domain	-	-	-	ko:K02616	-	-	-	-	ko00000,ko03000	-	-	-	PaaX,PaaX_C
DYD3_k127_535930_1	1415779.JOMH01000001_gene1102	5.543e-159	505.0	COG1024@1|root,COG1024@2|Bacteria,1PK10@1224|Proteobacteria,1RSCH@1236|Gammaproteobacteria,1X5XP@135614|Xanthomonadales	135614|Xanthomonadales	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_535930_5	1110697.NCAST_23_01320	2.596e-107	357.0	COG5285@1|root,COG5285@2|Bacteria,2GNXP@201174|Actinobacteria,4FVHP@85025|Nocardiaceae	201174|Actinobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_535930_3	1217720.ALOX01000088_gene3073	1.681e-115	383.0	COG1270@1|root,COG1270@2|Bacteria,1MURM@1224|Proteobacteria,2TRZ8@28211|Alphaproteobacteria,2JQHP@204441|Rhodospirillales	204441|Rhodospirillales	H	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group	cobD	-	6.3.1.10	ko:K02227	ko00860,ko01100,map00860,map01100	M00122	R06529,R07302	RC00090,RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	CobD_Cbib
DYD3_k127_535930_6	78245.Xaut_5025	6.595e-107	357.0	COG0079@1|root,COG0079@2|Bacteria,1MXDP@1224|Proteobacteria,2TUEC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	COG0079 Histidinol-phosphate aromatic aminotransferase and cobyric acid decarboxylase	cobC	-	-	ko:K02225	ko00860,ko01100,map00860,map01100	M00122	R06529,R07302	RC00090,RC00096	ko00000,ko00001,ko00002	-	-	-	Aminotran_1_2
DYD3_k127_535930_10	331869.BAL199_20885	1.381e-79	273.0	COG0778@1|root,COG0778@2|Bacteria,1MZN8@1224|Proteobacteria,2TTDR@28211|Alphaproteobacteria,4BRYR@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	Nitroreductase family	bluB	GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016491,GO:0016705,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	1.13.11.79	ko:K04719	ko00740,ko01100,map00740,map01100	-	R09083	RC00435,RC02413	ko00000,ko00001,ko01000	-	-	-	Nitroreductase
DYD3_k127_535930_14	1211115.ALIQ01000212_gene3312	2.873e-11	65.0	2EKSU@1|root,301BI@2|Bacteria,1Q6QS@1224|Proteobacteria,2VCTJ@28211|Alphaproteobacteria,3NCUY@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Probable cobalt transporter subunit (CbtB)	-	-	-	-	-	-	-	-	-	-	-	-	CbtB
DYD3_k127_535930_12	107636.JQNK01000008_gene3711	1.911e-43	169.0	COG5446@1|root,COG5446@2|Bacteria,1RBWQ@1224|Proteobacteria,2U9NN@28211|Alphaproteobacteria,36YMS@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Probable cobalt transporter subunit (CbtA)	cbtA	-	-	-	-	-	-	-	-	-	-	-	CbtA
DYD3_k127_535930_4	1121939.L861_00410	3.02e-113	379.0	COG0174@1|root,COG0174@2|Bacteria,1MU6V@1224|Proteobacteria,1RPNZ@1236|Gammaproteobacteria,1XHZD@135619|Oceanospirillales	135619|Oceanospirillales	E	Belongs to the glutamine synthetase family	-	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_5391926_8	1122604.JONR01000027_gene3066	7.535e-28	113.0	COG3791@1|root,COG3791@2|Bacteria,1MX4A@1224|Proteobacteria,1S25J@1236|Gammaproteobacteria,1X61A@135614|Xanthomonadales	135614|Xanthomonadales	H	Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione	gfa	-	4.4.1.22	ko:K03396	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R06982	RC00069,RC01707	ko00000,ko00001,ko01000	-	-	-	GFA
DYD3_k127_5391926_2	1131814.JAFO01000001_gene102	2.153e-118	392.0	COG3391@1|root,COG3391@2|Bacteria,1MXJJ@1224|Proteobacteria,2TTH6@28211|Alphaproteobacteria,3EY9I@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	TIGRFAM 40-residue YVTN family beta-propeller repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_D1,Lactonase,NHL
DYD3_k127_5391926_6	78245.Xaut_0030	8.528e-69	237.0	COG3832@1|root,COG3832@2|Bacteria,1RD9A@1224|Proteobacteria,2U76G@28211|Alphaproteobacteria,3EZEE@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_5391926_9	187303.BN69_2904	9.99e-27	115.0	2BJZ8@1|root,32EC2@2|Bacteria,1RF67@1224|Proteobacteria,2UMCT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2380)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3280
DYD3_k127_5391926_3	325777.GW15_0219415	1.087e-102	342.0	COG1235@1|root,COG1235@2|Bacteria,1MWI5@1224|Proteobacteria,1RMM9@1236|Gammaproteobacteria,1X5KB@135614|Xanthomonadales	135614|Xanthomonadales	S	May be involved in the transport of PQQ or its precursor to the periplasm	pqqB	-	-	ko:K06136	-	-	-	-	ko00000	-	-	-	Lactamase_B_2
DYD3_k127_5391926_4	1408419.JHYG01000002_gene928	1.214e-99	340.0	COG5424@1|root,COG5424@2|Bacteria,1MW7G@1224|Proteobacteria,2TSQT@28211|Alphaproteobacteria,2JRFA@204441|Rhodospirillales	204441|Rhodospirillales	H	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ	pqqC	-	1.3.3.11	ko:K06137	-	-	-	-	ko00000,ko01000	-	-	-	TENA_THI-4
DYD3_k127_5391926_0	1122604.JONR01000027_gene3050	1.294e-149	492.0	COG0535@1|root,COG0535@2|Bacteria,1MUQP@1224|Proteobacteria,1RMR1@1236|Gammaproteobacteria,1X32K@135614|Xanthomonadales	135614|Xanthomonadales	H	Belongs to the radical SAM superfamily. PqqE family	pqqE	-	-	ko:K06139	-	-	-	-	ko00000	-	-	-	Fer4_12,Radical_SAM,SPASM
DYD3_k127_5391926_7	1131813.AQVT01000001_gene1827	1.81e-65	229.0	2CCJC@1|root,31PRJ@2|Bacteria,1R6D1@1224|Proteobacteria,2TV8P@28211|Alphaproteobacteria,1JTGB@119045|Methylobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5391926_1	1101191.KI912577_gene3367	4.773e-132	437.0	COG0842@1|root,COG0842@2|Bacteria,1MVUG@1224|Proteobacteria,2TSUF@28211|Alphaproteobacteria,1JRNI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	V	Transport permease protein	MA20_34500	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_5391926_5	460265.Mnod_5313	2.616e-90	301.0	COG1131@1|root,COG1131@2|Bacteria,1MX56@1224|Proteobacteria,2TTQM@28211|Alphaproteobacteria,1JS46@119045|Methylobacteriaceae	28211|Alphaproteobacteria	V	PFAM ABC transporter	MA20_34505	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_5396480_0	1472716.KBK24_0120640	3.653e-122	404.0	COG3523@1|root,COG3523@2|Bacteria,1MV3D@1224|Proteobacteria,2VJ0M@28216|Betaproteobacteria,1K310@119060|Burkholderiaceae	28216|Betaproteobacteria	S	type VI secretion protein	icmF	-	-	ko:K11891	ko02025,ko03070,map02025,map03070	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	IcmF-related,IcmF_C,ImcF-related_N
DYD3_k127_5396480_1	1121861.KB899910_gene681	7.396e-97	330.0	COG1360@1|root,COG3455@1|root,COG1360@2|Bacteria,COG3455@2|Bacteria,1MU13@1224|Proteobacteria,2TTGF@28211|Alphaproteobacteria,2JVP0@204441|Rhodospirillales	204441|Rhodospirillales	N	Type VI secretion system protein DotU	-	-	-	-	-	-	-	-	-	-	-	-	DotU,OmpA
DYD3_k127_5410156_4	1187851.A33M_0827	2.674e-87	293.0	COG0600@1|root,COG0600@2|Bacteria,1PHSM@1224|Proteobacteria,2V8ZN@28211|Alphaproteobacteria,3FEIH@34008|Rhodovulum	28211|Alphaproteobacteria	U	Binding-protein-dependent transport system inner membrane component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1
DYD3_k127_5410156_5	441620.Mpop_4264	5.196e-73	263.0	COG1116@1|root,COG1116@2|Bacteria,1R7ZX@1224|Proteobacteria,2U1V1@28211|Alphaproteobacteria,1JT4F@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	PFAM ABC transporter related	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_5410156_1	1121033.AUCF01000004_gene5001	1.89e-128	419.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,2JPE7@204441|Rhodospirillales	204441|Rhodospirillales	E	Oligopeptide/dipeptide transporter, C-terminal region	dppF	-	-	ko:K02032,ko:K12372	ko02010,ko02024,map02010,map02024	M00239,M00324	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_5410156_3	1122962.AULH01000007_gene1871	7.685e-120	393.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,36ZEG@31993|Methylocystaceae	28211|Alphaproteobacteria	EP	Oligopeptide/dipeptide transporter, C-terminal region	dppD	GO:0000166,GO:0003674,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008144,GO:0008150,GO:0015232,GO:0015886,GO:0016020,GO:0017076,GO:0022857,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0051179,GO:0051181,GO:0051184,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901678	-	ko:K12371	ko02010,map02010	M00324	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_5410156_2	1238182.C882_2839	2.397e-125	424.0	COG1173@1|root,COG1173@2|Bacteria,1MUG0@1224|Proteobacteria,2VETJ@28211|Alphaproteobacteria,2JQSG@204441|Rhodospirillales	204441|Rhodospirillales	EP	N-terminal TM domain of oligopeptide transport permease C	-	-	-	ko:K12370	ko02010,map02010	M00324	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
DYD3_k127_5410156_0	1110502.TMO_3018	2.483e-149	478.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TQKK@28211|Alphaproteobacteria,2JPDK@204441|Rhodospirillales	204441|Rhodospirillales	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K12369	ko02010,map02010	M00324	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_5419963_0	1301098.PKB_4247	3.479e-87	291.0	COG1028@1|root,COG1028@2|Bacteria,1PGYV@1224|Proteobacteria,1RXY5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_5419963_2	1382303.JPOM01000001_gene874	7.636e-33	130.0	COG3255@1|root,COG3255@2|Bacteria,1PBWT@1224|Proteobacteria,2V6E3@28211|Alphaproteobacteria,2KH6J@204458|Caulobacterales	204458|Caulobacterales	I	PFAM Sterol-binding domain protein	-	-	-	-	-	-	-	-	-	-	-	-	SCP2
DYD3_k127_5419963_3	1150469.RSPPHO_01440	7.11e-26	111.0	COG1487@1|root,COG1487@2|Bacteria,1RIB5@1224|Proteobacteria,2VGZ3@28211|Alphaproteobacteria,2JYSW@204441|Rhodospirillales	204441|Rhodospirillales	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	-	-	-	ko:K07062	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PIN
DYD3_k127_5419963_1	745310.G432_16980	6.126e-77	266.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2TVPD@28211|Alphaproteobacteria,2K3RF@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_543140_10	1217718.ALOU01000075_gene4485	2.012e-31	124.0	2DGRK@1|root,32U7S@2|Bacteria,1N22H@1224|Proteobacteria,2VSPD@28216|Betaproteobacteria,1K8GK@119060|Burkholderiaceae	28216|Betaproteobacteria	S	PFAM Phenol hydroxylase conserved region	poxE	-	-	ko:K16245	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	Phenol_monoox
DYD3_k127_543140_4	1122603.ATVI01000006_gene408	1.178e-172	547.0	COG2871@1|root,COG2871@2|Bacteria,1QTUV@1224|Proteobacteria,1RPG5@1236|Gammaproteobacteria,1X6HX@135614|Xanthomonadales	135614|Xanthomonadales	C	Oxidoreductase FAD-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_6,Fer2,NAD_binding_1,PepSY_TM
DYD3_k127_543140_0	1218084.BBJK01000089_gene5888	3.423e-241	761.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2WH2X@28216|Betaproteobacteria,1KIHC@119060|Burkholderiaceae	28216|Betaproteobacteria	T	Activator of aromatic catabolism	-	-	-	-	-	-	-	-	-	-	-	-	HTH_8,Sigma54_activat,V4R,XylR_N
DYD3_k127_543140_8	443598.AUFA01000006_gene3483	3.786e-69	238.0	COG3631@1|root,COG3631@2|Bacteria,1RHFG@1224|Proteobacteria,2UBBI@28211|Alphaproteobacteria,3K468@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_543140_9	1120956.JHZK01000003_gene314	2.372e-46	171.0	COG2440@1|root,COG2440@2|Bacteria,1RHTX@1224|Proteobacteria,2U9HM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Could be a 3Fe-4S cluster-containing protein	fixX	-	-	ko:K03855	-	-	-	-	ko00000	-	-	-	ETF_QO
DYD3_k127_543140_1	1120956.JHZK01000003_gene313	1.787e-223	698.0	COG0644@1|root,COG0644@2|Bacteria,1MVU6@1224|Proteobacteria,2TSCD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	FAD dependent oxidoreductase	fixC	-	-	ko:K00313	-	-	-	-	ko00000,ko01000	-	-	-	FAD_binding_2,FAD_binding_3,FAD_oxidored,GIDA
DYD3_k127_543140_3	1120956.JHZK01000003_gene312	3.783e-187	591.0	COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,2TR10@28211|Alphaproteobacteria,1JN8H@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Electron transfer flavoprotein domain	-	-	-	-	-	-	-	-	-	-	-	-	ETF,ETF_alpha
DYD3_k127_543140_6	864069.MicloDRAFT_00000060	3.557e-132	429.0	COG2086@1|root,COG2086@2|Bacteria,1MVH6@1224|Proteobacteria,2TSQX@28211|Alphaproteobacteria,1JR4F@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	PFAM Electron transfer flavoprotein	fixA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114	-	ko:K03521	-	-	-	-	ko00000	-	-	-	ETF
DYD3_k127_543140_11	316055.RPE_4519	5.972e-31	134.0	2E67S@1|root,330W8@2|Bacteria,1NA3E@1224|Proteobacteria,2UGFH@28211|Alphaproteobacteria,3JZMB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	May protect the nitrogenase Fe-Mo protein from oxidative damage	nifW	-	-	ko:K02595	-	-	-	-	ko00000	-	-	-	NifW
DYD3_k127_543140_7	1336235.JAEG01000016_gene4363	6.87e-111	366.0	COG1045@1|root,COG1045@2|Bacteria,1MVFX@1224|Proteobacteria,2TQQ5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	serine acetyltransferase	cysE	-	2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,SATase_N
DYD3_k127_543140_5	1120956.JHZK01000003_gene309	1.114e-137	459.0	COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2TSCJ@28211|Alphaproteobacteria,1JNHR@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)	nifV	-	2.3.3.13,2.3.3.14	ko:K01649,ko:K02594	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	M00432	R00271,R01213	RC00004,RC00067,RC00470,RC02754	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like
DYD3_k127_543140_2	272568.GDI0448	7.737e-207	650.0	COG1104@1|root,COG1104@2|Bacteria,1MU1C@1224|Proteobacteria,2TSQE@28211|Alphaproteobacteria,2JPHR@204441|Rhodospirillales	204441|Rhodospirillales	E	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	iscS	-	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
DYD3_k127_543140_12	595536.ADVE02000001_gene2949	1.244e-08	55.0	COG0694@1|root,COG0822@1|root,COG0694@2|Bacteria,COG0822@2|Bacteria,1RD5K@1224|Proteobacteria,2TU34@28211|Alphaproteobacteria,36YWR@31993|Methylocystaceae	28211|Alphaproteobacteria	CO	NifU-like N terminal domain	iscU	-	-	ko:K04488,ko:K13819	-	-	-	-	ko00000	-	-	-	Fer2_BFD,NifU,NifU_N
DYD3_k127_5439220_6	639283.Snov_2243	8.954e-70	244.0	COG1028@1|root,COG1028@2|Bacteria,1R48C@1224|Proteobacteria,2U3SV@28211|Alphaproteobacteria,3F0WG@335928|Xanthobacteraceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_5439220_0	1304275.C41B8_14910	4.593e-181	578.0	COG0579@1|root,COG0579@2|Bacteria,1N0QB@1224|Proteobacteria,1RN24@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	L-2-hydroxyglutarate oxidase LhgO	-	-	1.1.5.3	ko:K00111	ko00564,ko01110,map00564,map01110	-	R00848	RC00029	ko00000,ko00001,ko01000	-	-	-	DAO,Fer2_BFD
DYD3_k127_5439220_3	1304275.C41B8_14915	5.174e-135	442.0	COG0446@1|root,COG0446@2|Bacteria,1R6RY@1224|Proteobacteria,1RR2B@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	pyridine nucleotide-disulfide oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	Pyr_redox_2
DYD3_k127_5439220_1	1267005.KB911256_gene2151	1.546e-168	561.0	COG0554@1|root,COG0554@2|Bacteria,1MUP7@1224|Proteobacteria,2TRD7@28211|Alphaproteobacteria,3N7IA@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	G	FGGY family of carbohydrate kinases, N-terminal domain	glpK_1	-	2.7.1.30	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	-	R00847	RC00002,RC00017	ko00000,ko00001,ko01000,ko04147	-	-	-	FGGY_C,FGGY_N
DYD3_k127_5439220_2	266835.14027360	5.664e-162	516.0	COG0583@1|root,COG0583@2|Bacteria,1MU4E@1224|Proteobacteria,2TVFR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5439220_4	266835.14027361	5.365e-133	429.0	COG0702@1|root,COG0702@2|Bacteria,1N8V3@1224|Proteobacteria,2TYI8@28211|Alphaproteobacteria,43Q3J@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	GM	NAD(P)H-binding	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_10,NmrA
DYD3_k127_5439220_8	1509405.GV67_20350	5.83e-55	196.0	COG0720@1|root,COG0720@2|Bacteria,1RI8E@1224|Proteobacteria,2U8NH@28211|Alphaproteobacteria,4BEDT@82115|Rhizobiaceae	28211|Alphaproteobacteria	H	6-pyruvoyl tetrahydropterin synthase	-	-	-	-	-	-	-	-	-	-	-	-	PTPS
DYD3_k127_5439220_5	1028800.RG540_CH39790	2.425e-90	309.0	COG0438@1|root,COG0438@2|Bacteria,1P81Z@1224|Proteobacteria,2U314@28211|Alphaproteobacteria,4B9T0@82115|Rhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_5439220_7	1381123.AYOD01000035_gene3613	3.417e-59	215.0	COG2890@1|root,COG2890@2|Bacteria,1RHJW@1224|Proteobacteria,2U68I@28211|Alphaproteobacteria,43PCM@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	J	protein-(glutamine-N5) methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_5446042_5	741091.Rahaq_1737	1.117e-145	471.0	COG0747@1|root,COG0747@2|Bacteria,1MUPE@1224|Proteobacteria,1RQPY@1236|Gammaproteobacteria,3FGIV@34037|Rahnella	1236|Gammaproteobacteria	E	ABC-type dipeptide transport system, periplasmic component	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5,TAT_signal
DYD3_k127_5446042_10	391735.Veis_3965	2.258e-89	306.0	COG0657@1|root,COG0657@2|Bacteria,1MW4D@1224|Proteobacteria,2VIHB@28216|Betaproteobacteria,4A9R0@80864|Comamonadaceae	28216|Betaproteobacteria	I	PFAM Alpha beta hydrolase fold-3 domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
DYD3_k127_5446042_4	983920.Y88_3076	2.359e-156	501.0	COG3246@1|root,COG3246@2|Bacteria,1MZTP@1224|Proteobacteria,2TQKN@28211|Alphaproteobacteria,2K4GI@204457|Sphingomonadales	204457|Sphingomonadales	S	beta-keto acid cleavage enzyme	-	-	-	-	-	-	-	-	-	-	-	-	BKACE
DYD3_k127_5446042_1	983920.Y88_3077	2.863e-187	597.0	COG0824@1|root,COG1250@1|root,COG0824@2|Bacteria,COG1250@2|Bacteria,1MV8M@1224|Proteobacteria,2TRAW@28211|Alphaproteobacteria,2K8MP@204457|Sphingomonadales	204457|Sphingomonadales	I	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	3HCDH,3HCDH_N
DYD3_k127_5446042_3	1415780.JPOG01000001_gene1897	1.008e-170	542.0	COG0451@1|root,COG0451@2|Bacteria,1P603@1224|Proteobacteria,1RQ2R@1236|Gammaproteobacteria,1X41X@135614|Xanthomonadales	135614|Xanthomonadales	M	3-beta hydroxysteroid dehydrogenase	cdh1	-	1.1.1.412	ko:K22320	-	-	-	-	ko00000,ko01000	-	-	-	3Beta_HSD
DYD3_k127_5446042_11	1415780.JPOG01000001_gene1898	3.205e-84	291.0	COG3000@1|root,COG3000@2|Bacteria,1PK2W@1224|Proteobacteria,1SGZV@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Fatty acid hydroxylase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	FA_hydroxylase
DYD3_k127_5446042_2	1415780.JPOG01000001_gene1899	1.421e-183	579.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X4MT@135614|Xanthomonadales	135614|Xanthomonadales	C	In Escherichia coli this enzyme appears to be an NAD NADP -dependent succinate semialdehyde dehydrogenase	gabD	-	1.2.1.16,1.2.1.20,1.2.1.24,1.2.1.79	ko:K00135,ko:K08324	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	M00027	R00713,R00714,R02401	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_5446042_13	83406.HDN1F_11070	1.749e-50	189.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	belongs to the aldehyde dehydrogenase family	-	-	1.2.99.10	ko:K22445	-	-	-	-	ko00000,ko01000	-	-	-	Aldedh
DYD3_k127_5446042_0	1415780.JPOG01000001_gene1900	5.209e-221	696.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,1RMD2@1236|Gammaproteobacteria,1X3AK@135614|Xanthomonadales	135614|Xanthomonadales	E	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_5446042_12	1415780.JPOG01000001_gene1901	9.059e-81	281.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	yvaF	GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:1990837,GO:2000112,GO:2001141	-	ko:K09017,ko:K22105	-	-	-	-	ko00000,ko03000	-	-	-	TetR_N
DYD3_k127_5446042_8	1122604.JONR01000004_gene773	5.721e-101	334.0	COG1028@1|root,COG1028@2|Bacteria,1QDWF@1224|Proteobacteria,1RR7J@1236|Gammaproteobacteria,1X5M1@135614|Xanthomonadales	135614|Xanthomonadales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_5446042_7	1437824.BN940_10421	1.599e-126	412.0	COG0543@1|root,COG0543@2|Bacteria,1QTSK@1224|Proteobacteria,2VH0M@28216|Betaproteobacteria,3T1HB@506|Alcaligenaceae	28216|Betaproteobacteria	CH	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	fpr	-	1.18.1.2,1.19.1.1	ko:K00528	-	-	R10159	-	ko00000,ko01000	-	-	-	FAD_binding_6,NAD_binding_1
DYD3_k127_5446042_6	1123261.AXDW01000011_gene579	1.93e-127	420.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,1RMG8@1236|Gammaproteobacteria,1X308@135614|Xanthomonadales	135614|Xanthomonadales	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
DYD3_k127_5446042_9	1122604.JONR01000063_gene3205	7.44e-98	346.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RSD3@1236|Gammaproteobacteria,1X9G1@135614|Xanthomonadales	135614|Xanthomonadales	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_5446042_14	95619.PM1_0222375	3.795e-07	54.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,1RN8H@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_5446204_4	395964.KE386496_gene3130	9.406e-86	288.0	COG0708@1|root,COG0708@2|Bacteria,1MVMC@1224|Proteobacteria,2TRWQ@28211|Alphaproteobacteria,3NAGY@45404|Beijerinckiaceae	28211|Alphaproteobacteria	L	Endonuclease/Exonuclease/phosphatase family	xthA2	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
DYD3_k127_5446204_0	1297570.MESS4_340077	8.662e-199	625.0	COG3177@1|root,COG3177@2|Bacteria,1NB0K@1224|Proteobacteria,2TTTS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Filamentation induced by cAMP protein fic	-	-	-	-	-	-	-	-	-	-	-	-	Fic
DYD3_k127_5446204_8	1089552.KI911559_gene302	3.018e-33	136.0	COG2905@1|root,COG2905@2|Bacteria,1R2AR@1224|Proteobacteria,2TZF3@28211|Alphaproteobacteria,2JZ0Y@204441|Rhodospirillales	204441|Rhodospirillales	T	Cyclic nucleotide-monophosphate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	cNMP_binding
DYD3_k127_5446204_1	1121033.AUCF01000003_gene3320	4.256e-191	626.0	COG1132@1|root,COG1132@2|Bacteria,1MWTY@1224|Proteobacteria,2TRSY@28211|Alphaproteobacteria,2JPPS@204441|Rhodospirillales	204441|Rhodospirillales	V	ABC transporter transmembrane region	-	-	-	ko:K02021	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21	-	-	ABC_membrane,ABC_tran,cNMP_binding
DYD3_k127_5446204_5	1380394.JADL01000001_gene2430	6.444e-81	286.0	COG3898@1|root,COG3898@2|Bacteria,1P5RR@1224|Proteobacteria,2TT5Q@28211|Alphaproteobacteria,2JPI8@204441|Rhodospirillales	204441|Rhodospirillales	S	HemY protein N-terminus	-	-	-	ko:K02498	-	-	-	-	ko00000	-	-	-	HemY_N,TPR_19
DYD3_k127_5446204_11	1207063.P24_06831	4.508e-17	94.0	COG1587@1|root,COG4223@1|root,COG1587@2|Bacteria,COG4223@2|Bacteria,1NMTP@1224|Proteobacteria,2U1Y2@28211|Alphaproteobacteria,2JS8C@204441|Rhodospirillales	204441|Rhodospirillales	H	COG1587 Uroporphyrinogen-III synthase	hemD	-	4.2.1.75	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03165	RC01861	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4,Mitofilin
DYD3_k127_5446204_7	1430440.MGMSRv2_0906	1.231e-51	194.0	COG1587@1|root,COG1587@2|Bacteria,1NMTP@1224|Proteobacteria,2U1Y2@28211|Alphaproteobacteria,2JS8C@204441|Rhodospirillales	204441|Rhodospirillales	H	COG1587 Uroporphyrinogen-III synthase	hemD	-	4.2.1.75	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03165	RC01861	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4,Mitofilin
DYD3_k127_5446204_3	1150469.RSPPHO_02495	1.641e-90	307.0	COG0181@1|root,COG0181@2|Bacteria,1MU56@1224|Proteobacteria,2TS3D@28211|Alphaproteobacteria,2JPN4@204441|Rhodospirillales	204441|Rhodospirillales	H	Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps	hemC	-	2.5.1.61	ko:K01749	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00084	RC02317	ko00000,ko00001,ko00002,ko01000	-	-	-	Porphobil_deam,Porphobil_deamC
DYD3_k127_5446204_2	1121033.AUCF01000020_gene657	2.257e-143	469.0	COG0533@1|root,COG0533@2|Bacteria,1MU6S@1224|Proteobacteria,2TSF7@28211|Alphaproteobacteria,2JQNB@204441|Rhodospirillales	204441|Rhodospirillales	O	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction	tsaD	-	2.3.1.234	ko:K01409	-	-	R10648	RC00070,RC00416	ko00000,ko01000,ko03016	-	-	-	Peptidase_M22
DYD3_k127_5446204_9	95619.PM1_0205810	2.802e-28	119.0	COG3668@1|root,COG3668@2|Bacteria,1N9UE@1224|Proteobacteria,1SCS6@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	ParE toxin of type II toxin-antitoxin system, parDE	-	-	-	-	-	-	-	-	-	-	-	-	ParE_toxin
DYD3_k127_5446204_10	1219045.BV98_001491	1.421e-18	87.0	COG3077@1|root,COG3077@2|Bacteria,1QV6F@1224|Proteobacteria,2TWBI@28211|Alphaproteobacteria,2KEEB@204457|Sphingomonadales	204457|Sphingomonadales	L	Addiction module antitoxin, RelB DinJ family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5446204_6	1125973.JNLC01000014_gene2350	7.469e-70	241.0	COG0834@1|root,COG0834@2|Bacteria,1MXIA@1224|Proteobacteria,2TV6I@28211|Alphaproteobacteria,3K6GS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_5447558_8	1415778.JQMM01000001_gene1251	0.0009726	42.0	2DP6U@1|root,330T2@2|Bacteria,1N7R9@1224|Proteobacteria,1SDI8@1236|Gammaproteobacteria,1JA9T@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Gly-zipper_Omp,Gly-zipper_OmpA,Gly-zipper_YMGG
DYD3_k127_5447558_7	1037409.BJ6T_14340	5.834e-05	50.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria,3JUGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Resolvase	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD3_k127_5447558_0	709797.CSIRO_0466	5.613e-175	567.0	COG4178@1|root,COG4178@2|Bacteria,1MW09@1224|Proteobacteria,2TS9Q@28211|Alphaproteobacteria,3JQVA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter	-	-	-	ko:K02471	ko02010,map02010	-	-	-	ko00000,ko00001,ko02000	3.A.1.203.11,3.A.1.203.4	-	-	ABC_membrane_2,ABC_tran
DYD3_k127_5447558_2	1385517.N800_14175	1.911e-83	284.0	COG4760@1|root,COG4760@2|Bacteria,1REUF@1224|Proteobacteria,1T1EH@1236|Gammaproteobacteria,1XD49@135614|Xanthomonadales	135614|Xanthomonadales	S	Inhibitor of apoptosis-promoting Bax1	-	-	-	-	-	-	-	-	-	-	-	-	BaxI_1
DYD3_k127_5447558_4	1380391.JIAS01000020_gene1471	4.305e-31	128.0	COG3450@1|root,COG3450@2|Bacteria,1N0F7@1224|Proteobacteria,2UG5M@28211|Alphaproteobacteria,2JUD0@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF861)	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_3
DYD3_k127_5447558_6	225937.HP15_904	1.604e-16	89.0	COG3832@1|root,COG3832@2|Bacteria,1N94B@1224|Proteobacteria,1SFH4@1236|Gammaproteobacteria	1236|Gammaproteobacteria	J	glyoxalase III activity	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_5447558_1	231434.JQJH01000003_gene410	7.727e-141	457.0	COG0697@1|root,COG0697@2|Bacteria,1N3FA@1224|Proteobacteria,2TTFI@28211|Alphaproteobacteria,3NA4R@45404|Beijerinckiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	Alginate_exp,EamA
DYD3_k127_5453744_1	1038858.AXBA01000004_gene147	1.218e-156	497.0	COG0191@1|root,COG0191@2|Bacteria,1MURX@1224|Proteobacteria,2TSAD@28211|Alphaproteobacteria,3EYPR@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Fructose-bisphosphate aldolase class-II	cbbA	-	4.1.2.13	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167,M00344,M00345	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	F_bP_aldolase
DYD3_k127_5453744_0	1532558.JL39_18130	1.604e-292	903.0	COG1850@1|root,COG1850@2|Bacteria,1MWEB@1224|Proteobacteria,2TSJV@28211|Alphaproteobacteria,4B9X3@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the RuBisCO large chain family	cbbL	-	4.1.1.39	ko:K01601	ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200	M00165,M00166,M00532	R00024,R03140	RC00172,RC00859	ko00000,ko00001,ko00002,ko01000	-	-	-	RuBisCO_large,RuBisCO_large_N
DYD3_k127_5453744_4	113395.AXAI01000036_gene347	3.404e-62	216.0	COG4451@1|root,COG4451@2|Bacteria,1R9ZE@1224|Proteobacteria,2U7JJ@28211|Alphaproteobacteria,3JY43@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	ribulose bisphosphate carboxylase, small chain	cbbS	-	4.1.1.39	ko:K01602	ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200	M00165,M00166,M00532	R00024,R03140	RC00172,RC00859	ko00000,ko00001,ko00002,ko01000	-	-	-	RuBisCO_small
DYD3_k127_5453744_2	991905.SL003B_0986	2.486e-135	445.0	COG0464@1|root,COG0464@2|Bacteria,1MUCN@1224|Proteobacteria,2TVFY@28211|Alphaproteobacteria,4BSCW@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	PFAM ATPase family associated with various cellular activities (AAA)	cbbX	-	-	-	-	-	-	-	-	-	-	-	AAA
DYD3_k127_5453744_3	1411123.JQNH01000001_gene1499	7.597e-74	251.0	COG0036@1|root,COG0036@2|Bacteria,1MUZM@1224|Proteobacteria,2TQKR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Belongs to the ribulose-phosphate 3-epimerase family	-	-	-	-	-	-	-	-	-	-	-	-	Ribul_P_3_epim
DYD3_k127_5486597_0	1380391.JIAS01000012_gene4253	1.408e-257	808.0	COG0577@1|root,COG1136@1|root,COG0577@2|Bacteria,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,2TS3W@28211|Alphaproteobacteria,2JQ1G@204441|Rhodospirillales	204441|Rhodospirillales	V	membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	macB	-	-	ko:K05685	ko02010,map02010	M00709	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.122.1,3.A.1.122.12	-	-	ABC_tran,FtsX,MacB_PCD
DYD3_k127_5486597_1	1380391.JIAS01000012_gene4254	3.486e-18	99.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2TSN8@28211|Alphaproteobacteria,2JQZE@204441|Rhodospirillales	204441|Rhodospirillales	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
DYD3_k127_5499218_6	1121033.AUCF01000018_gene5816	2.711e-38	147.0	COG0500@1|root,COG2226@2|Bacteria,1NA7K@1224|Proteobacteria,2TT7T@28211|Alphaproteobacteria,2JPUY@204441|Rhodospirillales	204441|Rhodospirillales	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD3_k127_5499218_1	414684.RC1_3431	4.685e-93	316.0	COG0491@1|root,COG0491@2|Bacteria,1MU8Q@1224|Proteobacteria,2TSVS@28211|Alphaproteobacteria,2JQE0@204441|Rhodospirillales	204441|Rhodospirillales	S	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid	gloB	-	3.1.2.6	ko:K01069	ko00620,map00620	-	R01736	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	HAGH_C,Lactamase_B
DYD3_k127_5499218_5	414684.RC1_3430	1.273e-57	217.0	COG0625@1|root,COG0625@2|Bacteria,1RHSK@1224|Proteobacteria,2U5GF@28211|Alphaproteobacteria,2JSRE@204441|Rhodospirillales	204441|Rhodospirillales	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_3
DYD3_k127_5499218_4	1510531.JQJJ01000010_gene1940	2.133e-64	230.0	COG3542@1|root,COG3542@2|Bacteria,1RHBE@1224|Proteobacteria,2U962@28211|Alphaproteobacteria,3JYGA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin superfamily (DUF985)	MA20_39615	-	-	ko:K09705	-	-	-	-	ko00000	-	-	-	Cupin_5
DYD3_k127_5499218_8	1545915.JROG01000008_gene3382	6.587e-15	87.0	COG1569@1|root,COG1569@2|Bacteria,1N1T4@1224|Proteobacteria,2UDDN@28211|Alphaproteobacteria,2KDD7@204457|Sphingomonadales	204457|Sphingomonadales	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN_3
DYD3_k127_5499218_9	269796.Rru_A1416	7.643e-14	82.0	COG4226@1|root,COG4226@2|Bacteria,1N2N5@1224|Proteobacteria,2UF09@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	protein encoded in hypervariable junctions of pilus gene clusters	-	-	-	-	-	-	-	-	-	-	-	-	HicB
DYD3_k127_5499218_3	1282876.BAOK01000002_gene537	1.038e-76	264.0	COG0625@1|root,COG0625@2|Bacteria,1MXHH@1224|Proteobacteria,2TVGY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Glutathione S-transferase	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_3,GST_N
DYD3_k127_5499218_2	1120792.JAFV01000001_gene2606	5.046e-86	293.0	COG0697@1|root,COG0697@2|Bacteria,1MVGC@1224|Proteobacteria,2TS6Y@28211|Alphaproteobacteria,36Y08@31993|Methylocystaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_39610	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_5499218_0	1110502.TMO_0153	2.346e-113	370.0	COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,2TRCF@28211|Alphaproteobacteria,2JQTW@204441|Rhodospirillales	204441|Rhodospirillales	IQ	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	1.1.1.100,1.1.1.36	ko:K00023,ko:K00059	ko00061,ko00333,ko00630,ko00650,ko00780,ko01040,ko01100,ko01120,ko01130,ko01200,ko01212,map00061,map00333,map00630,map00650,map00780,map01040,map01100,map01120,map01130,map01200,map01212	M00083,M00373,M00572	R01779,R01977,R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00103,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_5499218_7	1101190.ARWB01000001_gene3375	5.403e-34	131.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,36X6J@31993|Methylocystaceae	28211|Alphaproteobacteria	I	Thiolase, C-terminal domain	phbA	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_5509778_1	288000.BBta_1220	2.147e-28	116.0	2E3WG@1|root,32YTM@2|Bacteria,1N8TX@1224|Proteobacteria,2UFMP@28211|Alphaproteobacteria,3K0F3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3768)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3768
DYD3_k127_5509778_2	1120983.KB894574_gene938	8.695e-25	107.0	2E3WG@1|root,32YTM@2|Bacteria,1N8TX@1224|Proteobacteria,2UFMP@28211|Alphaproteobacteria,1JQAY@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3768)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3768
DYD3_k127_5509778_0	622637.KE124774_gene2559	1.229e-91	318.0	2EY2I@1|root,33RBF@2|Bacteria,1R9QM@1224|Proteobacteria,2U4R3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5509778_4	1297863.APJF01000009_gene236	3.34e-05	56.0	2E5Z4@1|root,330NN@2|Bacteria,1N66J@1224|Proteobacteria,2UD3K@28211|Alphaproteobacteria,3K0CK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5517221_3	1337093.MBE-LCI_3280	1.375e-31	123.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRKS@28211|Alphaproteobacteria,2P9JP@245186|Loktanella	28211|Alphaproteobacteria	H	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	acsA	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
DYD3_k127_5517221_1	640081.Dsui_1569	2.857e-160	520.0	COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,2VGZV@28216|Betaproteobacteria,2KU63@206389|Rhodocyclales	206389|Rhodocyclales	S	Polyphosphate kinase 2 (PPK2)	-	-	-	-	-	-	-	-	-	-	-	-	PPK2
DYD3_k127_5517221_5	1122132.AQYH01000007_gene1912	1.07e-15	92.0	2E41G@1|root,32YY3@2|Bacteria,1N7AU@1224|Proteobacteria,2UF3E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5517221_2	1101191.KI912577_gene1155	4.192e-82	278.0	COG3897@1|root,COG3897@2|Bacteria,1N9VC@1224|Proteobacteria,2TV6N@28211|Alphaproteobacteria,1JS9J@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Ribosomal protein L11 methyltransferase (PrmA)	-	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010565,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031974,GO:0031998,GO:0031999,GO:0032259,GO:0036211,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043467,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045833,GO:0045922,GO:0046320,GO:0046322,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050994,GO:0050995,GO:0051341,GO:0051354,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1904732,GO:1904733,GO:1904735,GO:1904736	-	-	-	-	-	-	-	-	-	-	PrmA
DYD3_k127_5517221_0	402881.Plav_1859	1.979e-234	732.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,1JN0Y@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	MA20_17005	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_5520240_1	269482.Bcep1808_5573	4.469e-136	440.0	COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,2W1KB@28216|Betaproteobacteria,1K030@119060|Burkholderiaceae	28216|Betaproteobacteria	E	PFAM phenylalanine histidine ammonia-lyase	-	-	4.3.1.3	ko:K01745	ko00340,ko01100,map00340,map01100	M00045	R01168	RC00361	ko00000,ko00001,ko00002,ko01000	-	-	-	Lyase_aromatic
DYD3_k127_5520240_0	1144312.PMI09_03174	3.423e-159	510.0	COG0665@1|root,COG0665@2|Bacteria,1R79A@1224|Proteobacteria,2TVMR@28211|Alphaproteobacteria,4B7A0@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	-	-	-	ko:K02846	-	-	-	-	ko00000,ko01000	-	-	-	DAO,FAD_binding_2,NAD_binding_8
DYD3_k127_5520240_5	420324.KI912037_gene2394	9.586e-37	142.0	2CC0C@1|root,32RUG@2|Bacteria,1MZVQ@1224|Proteobacteria,2UBWU@28211|Alphaproteobacteria,1JVNB@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3297)	MA20_01105	-	-	-	-	-	-	-	-	-	-	-	DUF3297
DYD3_k127_5520240_6	1114964.L485_22345	1.777e-36	147.0	2DTGW@1|root,33K9X@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5520240_4	1449049.JONW01000005_gene1251	2.452e-52	188.0	COG3631@1|root,COG3631@2|Bacteria,1RDZR@1224|Proteobacteria,2UDVI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_5520240_2	1380394.JADL01000011_gene3857	6.637e-132	426.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,2JZS5@204441|Rhodospirillales	204441|Rhodospirillales	K	COG0583 Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5520240_3	1282362.AEAC466_20390	5.608e-91	314.0	COG2207@1|root,COG2207@2|Bacteria,1P4M5@1224|Proteobacteria,2TSQV@28211|Alphaproteobacteria,2KJ01@204458|Caulobacterales	204458|Caulobacterales	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
DYD3_k127_5531216_7	1123255.JHYS01000018_gene116	4.294e-22	99.0	COG1075@1|root,COG1075@2|Bacteria,1R88U@1224|Proteobacteria,2VPDJ@28216|Betaproteobacteria,4ACR2@80864|Comamonadaceae	28216|Betaproteobacteria	S	PGAP1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	PGAP1
DYD3_k127_5531216_3	323098.Nwi_2576	1.617e-57	216.0	295BR@1|root,2ZSPU@2|Bacteria,1RECV@1224|Proteobacteria,2UCPZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5531216_5	1238182.C882_1527	2.064e-40	153.0	COG2050@1|root,COG2050@2|Bacteria,1RK46@1224|Proteobacteria,2U9U1@28211|Alphaproteobacteria,2JT0G@204441|Rhodospirillales	204441|Rhodospirillales	Q	Domain of unknown function (DUF4442)	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_5531216_6	443598.AUFA01000008_gene4009	2.107e-39	154.0	COG1846@1|root,COG1846@2|Bacteria,1RIX7@1224|Proteobacteria,2U2H9@28211|Alphaproteobacteria,3JWDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
DYD3_k127_5531216_0	402881.Plav_2085	2.258e-138	457.0	COG1063@1|root,COG1063@2|Bacteria,1MZ0B@1224|Proteobacteria,2U2M9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N
DYD3_k127_5531216_4	426355.Mrad2831_1545	1.25e-56	216.0	COG0625@1|root,COG0625@2|Bacteria,1RHSK@1224|Proteobacteria,2U5GF@28211|Alphaproteobacteria,1JRUM@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	PFAM Glutathione S-transferase domain	yibF	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N_3
DYD3_k127_5531216_1	1333998.M2A_2528	2.176e-83	287.0	COG1752@1|root,COG1752@2|Bacteria,1MUM9@1224|Proteobacteria,2TVQR@28211|Alphaproteobacteria,4BQVT@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Patatin-like phospholipase	rssA	GO:0003674,GO:0003824,GO:0016787	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin
DYD3_k127_5531216_2	649831.L083_0843	1.334e-65	237.0	COG0483@1|root,COG0483@2|Bacteria,2GP74@201174|Actinobacteria,4DD7D@85008|Micromonosporales	201174|Actinobacteria	G	Inositol monophosphatase	-	-	-	-	-	-	-	-	-	-	-	-	Inositol_P
DYD3_k127_5547029_10	395965.Msil_2970	1.047e-100	348.0	COG2057@1|root,COG2057@2|Bacteria,1RA4V@1224|Proteobacteria,2TQS5@28211|Alphaproteobacteria,3NAI2@45404|Beijerinckiaceae	28211|Alphaproteobacteria	I	Coenzyme A transferase	scoB	-	2.8.3.5	ko:K01029	ko00072,ko00280,ko00650,map00072,map00280,map00650	-	R00410	RC00014	ko00000,ko00001,ko01000	-	-	-	CoA_trans
DYD3_k127_5547029_8	414684.RC1_2504	1.925e-123	399.0	COG1788@1|root,COG1788@2|Bacteria,1MVEI@1224|Proteobacteria,2TTE6@28211|Alphaproteobacteria,2JPE8@204441|Rhodospirillales	204441|Rhodospirillales	I	Coenzyme A transferase	-	-	2.8.3.5,2.8.3.8,2.8.3.9	ko:K01028,ko:K01034	ko00072,ko00280,ko00310,ko00627,ko00640,ko00650,ko01100,ko01120,ko02020,map00072,map00280,map00310,map00627,map00640,map00650,map01100,map01120,map02020	-	R00410,R01179,R01359,R01365,R07832	RC00012,RC00014	ko00000,ko00001,ko01000	-	-	-	CoA_trans
DYD3_k127_5547029_5	626418.bglu_2g08210	1.59e-165	526.0	COG0039@1|root,COG0039@2|Bacteria,1MV57@1224|Proteobacteria,2VHC8@28216|Betaproteobacteria,1K1KT@119060|Burkholderiaceae	28216|Betaproteobacteria	C	Catalyzes the reversible oxidation of malate to oxaloacetate	mdh	-	1.1.1.37	ko:K00024	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740	R00342,R07136	RC00031	ko00000,ko00001,ko00002,ko01000	-	-	-	Ldh_1_C,Ldh_1_N
DYD3_k127_5547029_1	1453503.AU05_08270	1.5e-280	869.0	COG0069@1|root,COG0069@2|Bacteria,1MU7B@1224|Proteobacteria,1RP1C@1236|Gammaproteobacteria,1YDTD@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	E	Belongs to the glutamate synthase family	HA62_33250	-	-	-	-	-	-	-	-	-	-	-	Glu_synthase
DYD3_k127_5547029_9	450851.PHZ_c2748	2.09e-109	361.0	COG0426@1|root,COG0426@2|Bacteria,1MXIE@1224|Proteobacteria,2U3GM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_5547029_2	935261.JAGL01000029_gene359	2.542e-269	845.0	COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,2TQUX@28211|Alphaproteobacteria,43J2N@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	G	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate	tktA	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C,Transketolase_N
DYD3_k127_5547029_3	438753.AZC_0503	6.53e-185	581.0	COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,2TR6E@28211|Alphaproteobacteria,3EY73@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	gapA	GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
DYD3_k127_5547029_6	1101190.ARWB01000001_gene3141	1.385e-154	499.0	COG0126@1|root,COG0126@2|Bacteria,1MUNU@1224|Proteobacteria,2TSKQ@28211|Alphaproteobacteria,36XGN@31993|Methylocystaceae	28211|Alphaproteobacteria	G	Phosphoglycerate kinase	pgk	GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.2.3	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01512	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
DYD3_k127_5547029_7	414684.RC1_1822	5.665e-145	464.0	COG1830@1|root,COG1830@2|Bacteria,1MW9N@1224|Proteobacteria,2TSQD@28211|Alphaproteobacteria,2JQED@204441|Rhodospirillales	204441|Rhodospirillales	G	DeoC/LacD family aldolase	fbaB	-	4.1.2.13	ko:K11645	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	DeoC
DYD3_k127_5547029_12	1150626.PHAMO_270135	2.825e-86	293.0	COG0352@1|root,COG0352@2|Bacteria,1MV42@1224|Proteobacteria,2TSSA@28211|Alphaproteobacteria,2JQJQ@204441|Rhodospirillales	204441|Rhodospirillales	H	Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)	thiE	-	2.5.1.3	ko:K00788	ko00730,ko01100,map00730,map01100	M00127	R03223,R10712	RC00224,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000	-	-	-	TMP-TENI
DYD3_k127_5547029_11	78245.Xaut_1956	1.935e-88	312.0	COG1835@1|root,COG1835@2|Bacteria,1RICE@1224|Proteobacteria,2U9YK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	PFAM acyltransferase 3	exoZ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K16568	-	-	-	-	ko00000	-	-	-	Acyl_transf_3,Glyco_hydro_16
DYD3_k127_5547029_17	990285.RGCCGE502_00480	8.048e-08	57.0	29BZQ@1|root,2ZYY4@2|Bacteria,1PMT7@1224|Proteobacteria,2V0DF@28211|Alphaproteobacteria,4BGH1@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5547029_13	402881.Plav_1238	2.735e-84	284.0	COG3576@1|root,COG3576@2|Bacteria,1MWG9@1224|Proteobacteria,2TSKK@28211|Alphaproteobacteria,1JP7H@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Pfam:Pyridox_oxidase	-	-	-	ko:K07006	-	-	-	-	ko00000	-	-	-	Putative_PNPOx
DYD3_k127_5547029_14	765911.Thivi_3422	1.207e-75	269.0	COG0515@1|root,COG0790@1|root,COG0515@2|Bacteria,COG0790@2|Bacteria,1QA6R@1224|Proteobacteria,1SJVK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	KLT	Protein tyrosine kinase	-	-	-	-	-	-	-	-	-	-	-	-	Pkinase
DYD3_k127_5547029_15	42256.RradSPS_3010	2.594e-65	237.0	COG0657@1|root,COG0657@2|Bacteria,2GKX2@201174|Actinobacteria,4CR64@84995|Rubrobacteria	84995|Rubrobacteria	I	Carboxylesterase family	-	-	-	ko:K01066	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_3
DYD3_k127_5547029_16	426716.JOAJ01000007_gene4417	2.624e-15	82.0	COG0454@1|root,COG0456@2|Bacteria,2I2QV@201174|Actinobacteria,4G0EN@85025|Nocardiaceae	201174|Actinobacteria	K	FR47-like protein	ats	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_5547029_0	394221.Mmar10_0167	0.0	1028.0	COG0639@1|root,COG4639@1|root,COG0639@2|Bacteria,COG4639@2|Bacteria,1N0V5@1224|Proteobacteria,2UDYW@28211|Alphaproteobacteria,4408P@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	PFAM metallophosphoesterase	-	-	3.1.3.16	ko:K01090	-	-	-	-	ko00000,ko01000	-	-	-	Metallophos
DYD3_k127_5547029_4	1297742.A176_06080	6.802e-166	533.0	COG2227@1|root,COG2227@2|Bacteria,1R6E0@1224|Proteobacteria,42ZTU@68525|delta/epsilon subdivisions,2WVFC@28221|Deltaproteobacteria,2YZN2@29|Myxococcales	28221|Deltaproteobacteria	H	RNA repair, ligase-Pnkp-associating, region of Hen1	ubiE2	-	-	-	-	-	-	-	-	-	-	-	Hen1_L,Methyltransf_23
DYD3_k127_5547403_0	1282876.BAOK01000001_gene1967	3.942e-127	424.0	COG0651@1|root,COG0651@2|Bacteria,1MURB@1224|Proteobacteria,2TRQ2@28211|Alphaproteobacteria,4BPB8@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	CP	Proton-conducting membrane transporter	nuoN2	-	1.6.5.3	ko:K00343,ko:K05568	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000,ko02000	2.A.63.1,2.A.63.2,3.D.1	-	-	Proton_antipo_M
DYD3_k127_5547403_6	1150469.RSPPHO_02863	4.583e-38	148.0	COG1006@1|root,COG1006@2|Bacteria,1RGU1@1224|Proteobacteria,2UA1Z@28211|Alphaproteobacteria,2JTQA@204441|Rhodospirillales	204441|Rhodospirillales	P	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L	-	-	-	ko:K05567	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	Oxidored_q2
DYD3_k127_5547403_2	523791.Kkor_0767	1.462e-80	279.0	COG2111@1|root,COG2111@2|Bacteria,1N1CK@1224|Proteobacteria,1RR3K@1236|Gammaproteobacteria,1XIST@135619|Oceanospirillales	135619|Oceanospirillales	P	Domain of unknown function (DUF4040)	-	-	-	ko:K05566	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	DUF4040,MnhB
DYD3_k127_5547403_9	225849.swp_0939	4.794e-17	90.0	COG1320@1|root,COG1320@2|Bacteria,1QB60@1224|Proteobacteria,1T6PT@1236|Gammaproteobacteria,2QC73@267890|Shewanellaceae	1236|Gammaproteobacteria	P	TIGRFAM monovalent cation proton antiporter, MnhG PhaG subunit	-	-	-	ko:K05571	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	PhaG_MnhG_YufB
DYD3_k127_5547403_8	1150469.RSPPHO_02866	8.022e-20	93.0	COG2212@1|root,COG2212@2|Bacteria,1N6VV@1224|Proteobacteria,2UHB7@28211|Alphaproteobacteria,2JU0Y@204441|Rhodospirillales	204441|Rhodospirillales	P	Multiple resistance and pH regulation protein F (MrpF / PhaF)	-	-	-	ko:K05570	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	MrpF_PhaF
DYD3_k127_5547403_7	550540.Fbal_1524	9.38e-29	123.0	COG1863@1|root,COG1863@2|Bacteria,1MZYJ@1224|Proteobacteria,1S7Z3@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Cation antiporter	mnhE	-	-	ko:K05569	-	-	-	-	ko00000,ko02000	2.A.63.1,2.A.63.2	-	-	MNHE
DYD3_k127_5547403_4	1282876.BAOK01000001_gene1974	1.851e-51	191.0	COG1278@1|root,COG1278@2|Bacteria,1RAUE@1224|Proteobacteria,2U0S7@28211|Alphaproteobacteria,4BR2P@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Cold shock protein domain	cspB	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_5547403_1	1110502.TMO_2473	2.616e-120	393.0	COG0715@1|root,COG0715@2|Bacteria,1MVRA@1224|Proteobacteria,2TQPE@28211|Alphaproteobacteria,2JPG6@204441|Rhodospirillales	204441|Rhodospirillales	P	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	-	-	-	ko:K15598	ko02010,map02010	M00442	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.3,3.A.1.17.6	-	-	NMT1
DYD3_k127_5547403_3	1089552.KI911559_gene2285	1.531e-67	245.0	COG0600@1|root,COG0600@2|Bacteria,1N0FV@1224|Proteobacteria,2U1I5@28211|Alphaproteobacteria,2JQF2@204441|Rhodospirillales	204441|Rhodospirillales	P	COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component	-	-	-	ko:K15599	ko02010,map02010	M00442	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.3,3.A.1.17.6	-	-	BPD_transp_1
DYD3_k127_5547403_5	1110502.TMO_2471	2.276e-44	165.0	COG1116@1|root,COG1116@2|Bacteria,1RASI@1224|Proteobacteria,2U3AE@28211|Alphaproteobacteria,2JSI2@204441|Rhodospirillales	204441|Rhodospirillales	P	ABC transporter	-	-	-	ko:K15600	ko02010,map02010	M00442	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.3,3.A.1.17.6	-	-	ABC_tran
DYD3_k127_5563100_1	1279038.KB907343_gene2364	4.007e-33	130.0	COG1576@1|root,COG1576@2|Bacteria,1R9Z2@1224|Proteobacteria,2U95Q@28211|Alphaproteobacteria,2JSBE@204441|Rhodospirillales	204441|Rhodospirillales	J	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA	rlmH	-	2.1.1.177	ko:K00783	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	SPOUT_MTase
DYD3_k127_5563100_0	1316936.K678_01666	1.826e-203	648.0	COG0696@1|root,COG0696@2|Bacteria,1MUQ1@1224|Proteobacteria,2TS6R@28211|Alphaproteobacteria,2JR4Y@204441|Rhodospirillales	204441|Rhodospirillales	G	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate	gpmI	-	5.4.2.12	ko:K15633	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000	-	-	-	Metalloenzyme,Phosphodiest,iPGM_N
DYD3_k127_5563100_2	460265.Mnod_4732	5.407e-26	121.0	COG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,2TUSP@28211|Alphaproteobacteria,1JR01@119045|Methylobacteriaceae	28211|Alphaproteobacteria	D	PFAM peptidase	filA	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_556573_7	83406.HDN1F_17110	5.924e-46	166.0	COG0183@1|root,COG0183@2|Bacteria,1MU8C@1224|Proteobacteria,1RNDU@1236|Gammaproteobacteria,1J56N@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	I	Thiolase, C-terminal domain	phlC	-	-	-	-	-	-	-	-	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_556573_2	1168065.DOK_19130	1.023e-99	339.0	COG1073@1|root,COG1073@2|Bacteria,1PQAX@1224|Proteobacteria,1S02C@1236|Gammaproteobacteria,1J81R@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	DUF2048
DYD3_k127_556573_10	1131814.JAFO01000001_gene272	7.482e-16	83.0	2E3EY@1|root,32YDV@2|Bacteria,1N8MQ@1224|Proteobacteria,2UG1Q@28211|Alphaproteobacteria,3F045@335928|Xanthobacteraceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_556573_0	1122951.ATUE01000005_gene2184	8.1e-145	470.0	COG1024@1|root,COG1024@2|Bacteria,1MVPQ@1224|Proteobacteria,1SYQM@1236|Gammaproteobacteria,3NTDQ@468|Moraxellaceae	1236|Gammaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_556573_8	1333998.M2A_1391	2.783e-39	151.0	COG5485@1|root,COG5485@2|Bacteria,1RFES@1224|Proteobacteria,2U8B5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_556573_3	1038859.AXAU01000013_gene6529	2.531e-94	315.0	COG0346@1|root,COG0346@2|Bacteria,1MWHG@1224|Proteobacteria,2U1WR@28211|Alphaproteobacteria,3JTJK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_09990	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase_4
DYD3_k127_556573_1	1280949.HAD_17186	7.533e-110	362.0	COG1028@1|root,COG1028@2|Bacteria,1PHI0@1224|Proteobacteria,2V7SQ@28211|Alphaproteobacteria,43ZEE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_556573_6	1304877.KI519399_gene3441	3.325e-60	215.0	COG1309@1|root,COG1309@2|Bacteria,1R53F@1224|Proteobacteria,2U2RU@28211|Alphaproteobacteria,3JUV0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_10010	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_556573_4	269796.Rru_A0654	3.523e-71	246.0	COG2095@1|root,COG2095@2|Bacteria,1MV1C@1224|Proteobacteria,2U91Q@28211|Alphaproteobacteria,2JWD1@204441|Rhodospirillales	204441|Rhodospirillales	U	MarC family integral membrane protein	-	-	-	ko:K05595	-	-	-	-	ko00000,ko02000	2.A.95.1	-	-	MarC
DYD3_k127_556573_11	690585.JNNU01000002_gene5178	7.819e-10	62.0	2ACYW@1|root,312KK@2|Bacteria,1PQW2@1224|Proteobacteria,2V37Q@28211|Alphaproteobacteria,4BK9J@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_556573_5	1144310.PMI07_000531	4.039e-65	227.0	COG2184@1|root,COG2184@2|Bacteria,1R72A@1224|Proteobacteria,2U7ZB@28211|Alphaproteobacteria,4BF2N@82115|Rhizobiaceae	28211|Alphaproteobacteria	D	Fic/DOC family	-	-	-	ko:K04095	-	-	-	-	ko00000,ko03036	-	-	-	Fic
DYD3_k127_556573_9	1054213.HMPREF9946_02915	6.646e-23	102.0	COG0506@1|root,COG4230@1|root,COG0506@2|Bacteria,COG4230@2|Bacteria,1MV93@1224|Proteobacteria,2TQPT@28211|Alphaproteobacteria,2JPKY@204441|Rhodospirillales	204441|Rhodospirillales	CE	Oxidizes proline to glutamate for use as a carbon and nitrogen source	putA	-	1.2.1.88,1.5.5.2	ko:K13821	ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130	-	R00245,R00707,R00708,R01253,R04444,R04445,R05051	RC00080,RC00083,RC00216,RC00242,RC00255	ko00000,ko00001,ko01000,ko03000	-	-	-	Aldedh,Pro_dh,Pro_dh-DNA_bdg
DYD3_k127_5573207_3	269796.Rru_A1762	3.18e-25	109.0	COG3737@1|root,COG3737@2|Bacteria,1N083@1224|Proteobacteria,2U95K@28211|Alphaproteobacteria,2JT8N@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF498/DUF598)	-	-	-	-	-	-	-	-	-	-	-	-	DUF498
DYD3_k127_5573207_2	1207063.P24_10251	3.325e-69	247.0	COG1562@1|root,COG1562@2|Bacteria,1MX4W@1224|Proteobacteria,2U08T@28211|Alphaproteobacteria,2JS3G@204441|Rhodospirillales	204441|Rhodospirillales	I	Phytoene squalene synthetase	-	-	2.5.1.32,2.5.1.99	ko:K02291	ko00906,ko01062,ko01100,ko01110,map00906,map01062,map01100,map01110	M00097	R02065,R04218,R07270,R10177	RC00362,RC01101,RC02869	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	SQS_PSY
DYD3_k127_5573207_1	652103.Rpdx1_2450	2.947e-94	320.0	COG0604@1|root,COG0604@2|Bacteria,1MWRK@1224|Proteobacteria,2TSPW@28211|Alphaproteobacteria,3JVTH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_5573207_0	1123269.NX02_10445	5.084e-159	507.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TS5U@28211|Alphaproteobacteria,2K0V5@204457|Sphingomonadales	204457|Sphingomonadales	S	2-nitropropane dioxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
DYD3_k127_5578549_7	1449049.JONW01000009_gene4432	4.082e-09	63.0	COG3173@1|root,COG3173@2|Bacteria,1MY0Y@1224|Proteobacteria,2TRMW@28211|Alphaproteobacteria,2KFT2@204458|Caulobacterales	204458|Caulobacterales	S	Phosphotransferase enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	APH
DYD3_k127_5578549_1	1382303.JPOM01000001_gene577	1.285e-186	592.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TU15@28211|Alphaproteobacteria,2KFJ6@204458|Caulobacterales	204458|Caulobacterales	C	cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
DYD3_k127_5578549_0	1429916.X566_16140	4.735e-197	620.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TSA0@28211|Alphaproteobacteria,3JQM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_06750	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_5578549_3	172088.AUGA01000008_gene1159	4.052e-140	447.0	COG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,2TRPN@28211|Alphaproteobacteria,3JU36@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_5578549_6	1335760.ASTG01000016_gene139	6.945e-37	152.0	COG1309@1|root,COG1309@2|Bacteria,1RJ2K@1224|Proteobacteria,2UD90@28211|Alphaproteobacteria,2KC7D@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_5578549_4	450851.PHZ_c1130	1.025e-107	355.0	COG1024@1|root,COG1024@2|Bacteria,1PJ4R@1224|Proteobacteria,2TSSU@28211|Alphaproteobacteria,2KIC2@204458|Caulobacterales	204458|Caulobacterales	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_5578549_5	402881.Plav_0088	1.113e-55	210.0	COG1309@1|root,COG1309@2|Bacteria,1MX0H@1224|Proteobacteria,2U08M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	tetR family	MA20_06745	-	-	-	-	-	-	-	-	-	-	-	TetR_C_9,TetR_N
DYD3_k127_5578549_2	1380391.JIAS01000006_gene2516	1.2e-170	542.0	COG0006@1|root,COG0006@2|Bacteria,1NTWB@1224|Proteobacteria,2TRKF@28211|Alphaproteobacteria,2JPEP@204441|Rhodospirillales	204441|Rhodospirillales	E	Creatinase/Prolidase N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Creatinase_N,Peptidase_M24
DYD3_k127_5578549_8	438753.AZC_0102	0.0001199	44.0	COG2183@1|root,COG2183@2|Bacteria,1MUA7@1224|Proteobacteria,2TTSC@28211|Alphaproteobacteria,3EY2N@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	Tex-like protein N-terminal domain	tex	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896	-	ko:K06959	-	-	-	-	ko00000	-	-	-	HHH_3,S1,Tex_N,Tex_YqgF
DYD3_k127_558564_7	420324.KI911961_gene1832	1.386e-19	92.0	COG4671@1|root,COG4671@2|Bacteria,1NE6T@1224|Proteobacteria,2U08G@28211|Alphaproteobacteria,1JS6E@119045|Methylobacteriaceae	28211|Alphaproteobacteria	M	Glycosyltransferase family 28 C-terminal domain	redA	-	-	-	-	-	-	-	-	-	-	-	Glyco_tran_28_C
DYD3_k127_558564_1	1336243.JAEA01000015_gene1199	5.075e-233	737.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,1JRYY@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	gsiA1	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_558564_0	1411123.JQNH01000001_gene287	8.74e-238	750.0	COG0747@1|root,COG0747@2|Bacteria,1MU3P@1224|Proteobacteria,2TT4M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	ABC-type dipeptide transport system periplasmic component	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
DYD3_k127_558564_3	670292.JH26_27435	6.604e-153	489.0	COG0601@1|root,COG0601@2|Bacteria,1MWXF@1224|Proteobacteria,2TR7C@28211|Alphaproteobacteria,1JTKI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	PFAM binding-protein-dependent transport systems inner membrane component	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_558564_2	1211115.ALIQ01000068_gene3483	5.635e-187	591.0	COG1173@1|root,COG1173@2|Bacteria,1MU26@1224|Proteobacteria,2TUWG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EP	ABC-type dipeptide oligopeptide nickel transport systems, permease components	gsiD1	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
DYD3_k127_558564_5	1211777.BN77_p10626	3.01e-53	192.0	2B25E@1|root,31UNN@2|Bacteria,1RIH3@1224|Proteobacteria,2U6GU@28211|Alphaproteobacteria,4BE92@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	S-adenosyl-L-methionine methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_17
DYD3_k127_558564_6	555793.WSK_2994	2.022e-40	159.0	COG0406@1|root,COG0406@2|Bacteria,1NPC4@1224|Proteobacteria,2UB7Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Phosphoglycerate mutase family	-	-	-	-	-	-	-	-	-	-	-	-	His_Phos_1
DYD3_k127_558564_4	1123269.NX02_00520	1.663e-80	274.0	COG1943@1|root,COG1943@2|Bacteria,1P19I@1224|Proteobacteria,2TR9D@28211|Alphaproteobacteria,2K880@204457|Sphingomonadales	204457|Sphingomonadales	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD3_k127_5602886_1	1287276.X752_21070	9.486e-10	72.0	COG5519@1|root,COG5519@2|Bacteria,1PFV7@1224|Proteobacteria,2UZIB@28211|Alphaproteobacteria,43PZV@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	Domain of unknown function (DUF927)	-	-	-	-	-	-	-	-	-	-	-	-	DUF927
DYD3_k127_5602886_0	1298858.AUEL01000017_gene2790	2.639e-116	376.0	COG1502@1|root,COG1502@2|Bacteria,1R9CI@1224|Proteobacteria,2U350@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	PLD-like domain	-	-	-	-	-	-	-	-	-	-	-	-	PLDc_2
DYD3_k127_5608788_0	1439940.BAY1663_03647	1.424e-116	382.0	COG3221@1|root,COG3221@2|Bacteria,1MXD8@1224|Proteobacteria,1RR46@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	Phosphonate ABC transporter	phnD	-	-	ko:K02044	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.9	-	-	Phosphonate-bd
DYD3_k127_5608788_1	1217718.ALOU01000058_gene740	7.144e-92	310.0	COG3638@1|root,COG3638@2|Bacteria,1MVE9@1224|Proteobacteria,2VIEZ@28216|Betaproteobacteria,1K508@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system	phnC	-	3.6.3.28	ko:K02041	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.9	-	-	ABC_tran
DYD3_k127_5608788_4	414684.RC1_2271	2.107e-70	250.0	COG0697@1|root,COG0697@2|Bacteria,1MZXM@1224|Proteobacteria,2TSZM@28211|Alphaproteobacteria,2JS66@204441|Rhodospirillales	204441|Rhodospirillales	EG	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_5608788_3	1101190.ARWB01000001_gene1149	3.35e-81	283.0	COG0657@1|root,COG0657@2|Bacteria,1RD8A@1224|Proteobacteria,2U1B8@28211|Alphaproteobacteria,36YBU@31993|Methylocystaceae	28211|Alphaproteobacteria	I	Steryl acetyl hydrolase	-	-	3.1.1.83	ko:K14731	ko00903,ko00930,ko01220,map00903,map00930,map01220	-	R03751,R06390,R06391,R06392,R06393	RC00713,RC00983,RC01505	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_3
DYD3_k127_5608788_2	419947.MRA_0312	1.359e-84	292.0	COG1028@1|root,COG1028@2|Bacteria,2GM7N@201174|Actinobacteria,237TI@1762|Mycobacteriaceae	201174|Actinobacteria	IQ	short chain dehydrogenase	-	-	1.3.1.33	ko:K00218	ko00860,ko01100,ko01110,map00860,map01100,map01110	-	R03845,R06286	RC01008	ko00000,ko00001,ko01000	-	-	-	adh_short
DYD3_k127_5608788_6	68170.KL590510_gene7234	1.026e-13	79.0	COG1309@1|root,COG1309@2|Bacteria,2GQBQ@201174|Actinobacteria,4E0XH@85010|Pseudonocardiales	201174|Actinobacteria	K	Tetracyclin repressor, C-terminal all-alpha domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C,TetR_N
DYD3_k127_5608788_5	1123072.AUDH01000014_gene1336	2.918e-34	136.0	COG3709@1|root,COG3709@2|Bacteria,1RK3Z@1224|Proteobacteria,2U616@28211|Alphaproteobacteria,2JSXM@204441|Rhodospirillales	204441|Rhodospirillales	P	Protein of unknown function (DUF1045)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1045
DYD3_k127_5622341_4	1292034.OR37_03283	2.939e-80	271.0	COG4341@1|root,COG4341@2|Bacteria,1QHQD@1224|Proteobacteria,2U1W2@28211|Alphaproteobacteria,2KHXP@204458|Caulobacterales	204458|Caulobacterales	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	-	-	-	-	-	-	-	-	-	HD
DYD3_k127_5622341_2	1121124.JNIX01000007_gene432	1.002e-103	343.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,2KFHT@204458|Caulobacterales	204458|Caulobacterales	G	PFAM class II aldolase adducin family protein	-	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
DYD3_k127_5622341_5	1523503.JPMY01000046_gene1268	5.84e-41	160.0	COG0664@1|root,COG0664@2|Bacteria,1RE4X@1224|Proteobacteria,1S4QX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	-	-	-	ko:K10914	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_5622341_3	1408418.JNJH01000008_gene2593	1.886e-95	317.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,2JRTT@204441|Rhodospirillales	204441|Rhodospirillales	O	maleylacetoacetate isomerase	maiA	-	5.2.1.4	ko:K01801	ko00350,ko01100,ko01120,map00350,map01100,map01120	-	R03868	RC00867	ko00000,ko00001,ko01000	-	-	-	GST_C_2,GST_C_3,GST_N,GST_N_3
DYD3_k127_5622341_1	1297569.MESS2_1570002	1.12e-118	387.0	COG1733@1|root,COG1733@2|Bacteria,1NEKW@1224|Proteobacteria,2U0MC@28211|Alphaproteobacteria,43J4M@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_5622341_0	1449065.JMLL01000010_gene786	2.796e-166	533.0	COG1960@1|root,COG1960@2|Bacteria,1MW97@1224|Proteobacteria,2TUS1@28211|Alphaproteobacteria,43J9C@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_38160	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_2,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_5628246_3	1122951.ATUE01000006_gene924	3.951e-13	71.0	COG1393@1|root,COG1393@2|Bacteria,1MZ4Z@1224|Proteobacteria,1S3Z8@1236|Gammaproteobacteria,3NN5P@468|Moraxellaceae	1236|Gammaproteobacteria	P	ArsC family	arsC	GO:0003674,GO:0003824,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008794,GO:0009987,GO:0016491,GO:0030611,GO:0030613,GO:0030614,GO:0033554,GO:0042221,GO:0046685,GO:0050896,GO:0051716,GO:0055114	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	iE2348C_1286.E2348C_3739,iECW_1372.ECW_m3763,iEKO11_1354.EKO11_0239,iLF82_1304.LF82_0152,iNRG857_1313.NRG857_17370,iWFL_1372.ECW_m3763	ArsC
DYD3_k127_5628246_1	1028801.RG1141_CH23520	1.39e-77	267.0	COG3260@1|root,COG3260@2|Bacteria,1QUBE@1224|Proteobacteria,2U279@28211|Alphaproteobacteria,4BCT2@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	NADH ubiquinone oxidoreductase, 20 Kd subunit	hycG	-	-	-	-	-	-	-	-	-	-	-	Oxidored_q6
DYD3_k127_5628246_0	1041146.ATZB01000023_gene2664	7.944e-231	723.0	COG3261@1|root,COG3262@1|root,COG3261@2|Bacteria,COG3262@2|Bacteria,1QUBF@1224|Proteobacteria,2TRE0@28211|Alphaproteobacteria,4BB0D@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	Respiratory-chain NADH dehydrogenase, 49 Kd subunit	hycE	-	-	-	-	-	-	-	-	-	-	-	Complex1_30kDa,Complex1_49kDa,NiFeSe_Hases
DYD3_k127_5628246_2	1040983.AXAE01000019_gene3610	1.991e-17	81.0	COG0651@1|root,COG0651@2|Bacteria,1MVBA@1224|Proteobacteria,2TSRU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	CP	PFAM NADH Ubiquinone plastoquinone (complex I)	hyfF	-	-	ko:K12141	-	-	-	-	ko00000,ko01000	-	-	-	Proton_antipo_M
DYD3_k127_5628364_10	1282876.BAOK01000001_gene1142	3.465e-15	87.0	COG3144@1|root,COG3144@2|Bacteria,1N7X4@1224|Proteobacteria,2UF9W@28211|Alphaproteobacteria,4BR0Z@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	N	Flagellar hook-length control protein FliK	-	-	-	ko:K10565	-	-	-	-	ko00000,ko02035	-	-	-	Flg_hook
DYD3_k127_5628364_4	1207063.P24_00820	5.319e-149	483.0	COG0482@1|root,COG0482@2|Bacteria,1MUT1@1224|Proteobacteria,2TQU7@28211|Alphaproteobacteria,2JPGI@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	mnmA	-	2.8.1.13	ko:K00566	ko04122,map04122	-	R08700	RC02313,RC02315	ko00000,ko00001,ko01000,ko03016	-	-	-	tRNA_Me_trans
DYD3_k127_5628364_7	1040986.ATYO01000008_gene2602	3.31e-45	171.0	2EBMF@1|root,335MP@2|Bacteria,1N8SV@1224|Proteobacteria,2UFFD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5628364_5	1156935.QWE_18909	7.838e-125	409.0	COG1396@1|root,COG2856@1|root,COG1396@2|Bacteria,COG2856@2|Bacteria,1NEHF@1224|Proteobacteria,2U342@28211|Alphaproteobacteria,4BM0W@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Pfam:DUF955	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31,Peptidase_M78
DYD3_k127_5628364_11	1283299.AUKG01000001_gene1461	9.315e-11	66.0	COG2199@1|root,COG3706@2|Bacteria,2HFR3@201174|Actinobacteria,4CR7F@84995|Rubrobacteria	84995|Rubrobacteria	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
DYD3_k127_5628364_9	1123020.AUIE01000028_gene2548	1.436e-15	87.0	COG2199@1|root,COG2199@2|Bacteria,1QTZT@1224|Proteobacteria,1T1J9@1236|Gammaproteobacteria,1YJ4V@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	T	N-terminal 7TM region of histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	CHASE3,GAF_3,GGDEF,HAMP,HisKA_7TM,PAS_4,PAS_8
DYD3_k127_5628364_6	1156919.QWC_07689	1.379e-63	232.0	COG0702@1|root,COG0702@2|Bacteria,1MZG7@1224|Proteobacteria,2VRAU@28216|Betaproteobacteria	28216|Betaproteobacteria	GM	Nucleoside-diphosphate-sugar epimerases	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_10
DYD3_k127_5628364_1	1122604.JONR01000010_gene3866	2.315e-312	969.0	COG3320@1|root,COG4221@1|root,COG3320@2|Bacteria,COG4221@2|Bacteria,1QSHC@1224|Proteobacteria,1RQP8@1236|Gammaproteobacteria,1X3FH@135614|Xanthomonadales	135614|Xanthomonadales	Q	Male sterility protein	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_4,adh_short
DYD3_k127_5628364_8	371731.Rsw2DRAFT_2946	1.626e-18	85.0	COG4890@1|root,COG4890@2|Bacteria,1NGDQ@1224|Proteobacteria,2UJD5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Cyd operon protein YbgT	-	-	1.10.3.14	ko:K00424	ko00190,ko02020,map00190,map02020	M00153	-	-	ko00000,ko00001,ko01000	3.D.4.3	-	-	YbgT_YccB
DYD3_k127_5628364_3	371731.Rsw2DRAFT_2945	9.53e-231	717.0	COG1294@1|root,COG1294@2|Bacteria,1MURP@1224|Proteobacteria,2TU3I@28211|Alphaproteobacteria,1FC24@1060|Rhodobacter	28211|Alphaproteobacteria	C	Cytochrome bd terminal oxidase subunit II	cydB	-	1.10.3.14	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_II
DYD3_k127_5628364_0	371731.Rsw2DRAFT_2944	0.0	1012.0	COG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,2TQMA@28211|Alphaproteobacteria,1FBSZ@1060|Rhodobacter	28211|Alphaproteobacteria	C	Cytochrome bd terminal oxidase subunit I	cydA	-	1.10.3.14	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_I
DYD3_k127_5628364_2	371731.Rsw2DRAFT_2943	6.003e-246	769.0	COG4987@1|root,COG4987@2|Bacteria,1QU1P@1224|Proteobacteria,2TV54@28211|Alphaproteobacteria,1FCB9@1060|Rhodobacter	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	cydC	-	-	ko:K16012	ko02010,map02010	-	-	-	ko00000,ko00001,ko02000	3.A.1.129	-	-	ABC_membrane,ABC_tran
DYD3_k127_5633651_1	1549858.MC45_06600	1.269e-139	447.0	COG0627@1|root,COG0627@2|Bacteria,1MUID@1224|Proteobacteria,2TQSM@28211|Alphaproteobacteria,2K143@204457|Sphingomonadales	204457|Sphingomonadales	S	Serine hydrolase involved in the detoxification of formaldehyde	-	-	3.1.2.12	ko:K01070	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R00527	RC00167,RC00320	ko00000,ko00001,ko01000	-	CE1	-	Esterase
DYD3_k127_5633651_0	1175306.GWL_31650	3.515e-159	505.0	COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,2VGZV@28216|Betaproteobacteria,4769P@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Polyphosphate kinase 2 (PPK2)	ppk2	-	2.7.4.1	ko:K22468	ko00190,ko03018,map00190,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	PPK2
DYD3_k127_5633651_3	1179778.PMM47T1_14896	8.09e-41	163.0	COG0583@1|root,COG0583@2|Bacteria,1PEF2@1224|Proteobacteria,1RS7V@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5633651_2	1137799.GZ78_06935	5.484e-97	331.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,1RMG8@1236|Gammaproteobacteria,1XIGY@135619|Oceanospirillales	135619|Oceanospirillales	I	PFAM Acyl-CoA dehydrogenase, type 2	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
DYD3_k127_5633651_4	640510.BC1001_0583	8.493e-23	109.0	COG1853@1|root,COG1853@2|Bacteria,1RKYB@1224|Proteobacteria,2WF4B@28216|Betaproteobacteria,1KHYM@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
DYD3_k127_5685086_2	1121123.AUAO01000001_gene1541	5.207e-37	144.0	COG1407@1|root,COG1407@2|Bacteria,1RC5G@1224|Proteobacteria,2TU2T@28211|Alphaproteobacteria,2KG9F@204458|Caulobacterales	204458|Caulobacterales	S	ICC-like phosphoesterases	-	-	-	ko:K06953	-	-	-	-	ko00000	-	-	-	Metallophos
DYD3_k127_5685086_1	1528106.JRJE01000032_gene2662	2.69e-160	522.0	COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,2TSPI@28211|Alphaproteobacteria,2JRHM@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Major Facilitator Superfamily	-	-	-	ko:K19577	-	-	-	-	ko00000,ko02000	2.A.1.2.65	-	-	MFS_1
DYD3_k127_5685086_0	1123229.AUBC01000016_gene4212	7.707e-178	567.0	COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,2TSQI@28211|Alphaproteobacteria,3JRWR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	MA20_29210	-	1.4.5.1	ko:K00285	ko00360,map00360	-	R01374,R09493	RC00006,RC00025	ko00000,ko00001,ko01000	-	-	-	DAO
DYD3_k127_5685459_2	1509405.GV67_02775	3.133e-77	263.0	COG0775@1|root,COG0775@2|Bacteria,1MY5S@1224|Proteobacteria,2TU7K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	phosphorylase	mtnN	-	3.2.2.9	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	M00034,M00609	R00194,R01401	RC00063,RC00318	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
DYD3_k127_5685459_3	1286093.C266_03143	8.439e-47	173.0	COG1487@1|root,COG1487@2|Bacteria,1MZZ9@1224|Proteobacteria,2VSN5@28216|Betaproteobacteria,1K8N5@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_5685459_4	78245.Xaut_3924	3.692e-22	97.0	COG5450@1|root,COG5450@2|Bacteria,1N75T@1224|Proteobacteria,2UFNE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial antitoxin of type II TA system, VapB	-	-	-	-	-	-	-	-	-	-	-	-	VapB_antitoxin
DYD3_k127_5685459_1	1177928.TH2_07326	1.335e-116	383.0	COG0583@1|root,COG0583@2|Bacteria,1QYAP@1224|Proteobacteria,2U7F2@28211|Alphaproteobacteria,2JSHS@204441|Rhodospirillales	204441|Rhodospirillales	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5685459_0	1144310.PMI07_004685	1.003e-175	557.0	COG0687@1|root,COG0687@2|Bacteria,1R4H8@1224|Proteobacteria,2U0YS@28211|Alphaproteobacteria,4B8MD@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding protein	-	-	-	ko:K02055	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	SBP_bac_8
DYD3_k127_5697655_10	272943.RSP_3041	2.697e-39	153.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,1FCCS@1060|Rhodobacter	28211|Alphaproteobacteria	P	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	fbpC	-	3.6.3.31	ko:K11072	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.11.1	-	-	ABC_tran,TOBE_2
DYD3_k127_5697655_7	1121028.ARQE01000010_gene1002	4.71e-61	226.0	COG1975@1|root,COG1975@2|Bacteria,1R3RT@1224|Proteobacteria,2TU5J@28211|Alphaproteobacteria,2PJJS@255475|Aurantimonadaceae	28211|Alphaproteobacteria	O	XdhC and CoxI family	xdhC	-	-	ko:K07402	-	-	-	-	ko00000	-	-	-	XdhC_C,XdhC_CoxI
DYD3_k127_5697655_0	1231185.BAMP01000034_gene512	0.0	1083.0	COG4631@1|root,COG4631@2|Bacteria,1NQSR@1224|Proteobacteria,2TTAB@28211|Alphaproteobacteria,43IBQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	F	Aldehyde oxidase and xanthine dehydrogenase a b hammerhead	xdhB	-	1.17.1.4	ko:K13482	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
DYD3_k127_5697655_2	1177928.TH2_00590	1.215e-136	447.0	COG4630@1|root,COG4630@2|Bacteria,1MWI1@1224|Proteobacteria,2TR3Q@28211|Alphaproteobacteria,2JR7F@204441|Rhodospirillales	204441|Rhodospirillales	F	CO dehydrogenase flavoprotein C-terminal domain	xdhA	-	1.17.1.4	ko:K13481	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5,Fer2,Fer2_2
DYD3_k127_5697655_9	1245471.PCA10_19260	1.017e-44	166.0	COG2351@1|root,COG2351@2|Bacteria,1RH84@1224|Proteobacteria,1S7C9@1236|Gammaproteobacteria,1YGI6@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	S	HIUase/Transthyretin family	uraH	-	3.5.2.17	ko:K07127	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R06601	RC03393	ko00000,ko00001,ko00002,ko01000,ko02000	9.B.35.1.2,9.B.35.2	-	-	Transthyretin
DYD3_k127_5697655_1	1232683.ADIMK_3866	4.577e-141	453.0	COG0726@1|root,COG0726@2|Bacteria,1MV3V@1224|Proteobacteria,1RPKM@1236|Gammaproteobacteria,46542@72275|Alteromonadaceae	1236|Gammaproteobacteria	G	xylanase chitin deacetylase	puuE	-	3.5.1.104,3.5.1.41,3.5.2.5	ko:K01452,ko:K16842,ko:K22278	ko00230,ko00520,ko01100,ko01120,map00230,map00520,map01100,map01120	M00546	R02333,R02425	RC00166,RC00300,RC00680	ko00000,ko00001,ko00002,ko01000	-	-	-	Polysacc_deac_1
DYD3_k127_5697655_8	1121033.AUCF01000038_gene616	1.007e-55	198.0	COG3195@1|root,COG3195@2|Bacteria,1RH9S@1224|Proteobacteria,2U9Y5@28211|Alphaproteobacteria,2JZBN@204441|Rhodospirillales	204441|Rhodospirillales	S	OHCU decarboxylase	-	-	-	-	-	-	-	-	-	-	-	-	OHCU_decarbox
DYD3_k127_5697655_6	1502851.FG93_01572	2.764e-70	244.0	COG1853@1|root,COG1853@2|Bacteria,1MUPP@1224|Proteobacteria	1224|Proteobacteria	S	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
DYD3_k127_5697655_5	1144342.PMI40_00970	9.485e-101	333.0	COG4126@1|root,COG4126@2|Bacteria,1MVNB@1224|Proteobacteria,2VIW8@28216|Betaproteobacteria,47517@75682|Oxalobacteraceae	28216|Betaproteobacteria	E	PFAM Asp Glu hydantoin racemase	hyuE	-	5.1.99.3	ko:K16841	ko00230,ko01120,map00230,map01120	-	R03925	RC01027	ko00000,ko00001,ko01000	-	-	-	Asp_Glu_race
DYD3_k127_5697655_4	1121033.AUCF01000012_gene836	3.465e-123	400.0	COG1177@1|root,COG1177@2|Bacteria,1MV84@1224|Proteobacteria,2TTUV@28211|Alphaproteobacteria,2JQXJ@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02053	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
DYD3_k127_5697655_3	1121033.AUCF01000012_gene837	3.068e-127	415.0	COG1176@1|root,COG1176@2|Bacteria,1MW13@1224|Proteobacteria,2TR2S@28211|Alphaproteobacteria,2JQCE@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02054	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
DYD3_k127_5701951_7	1177154.Y5S_03306	2.838e-24	104.0	COG1018@1|root,COG1018@2|Bacteria,1MY2Q@1224|Proteobacteria,1RR5A@1236|Gammaproteobacteria,1XN1A@135619|Oceanospirillales	135619|Oceanospirillales	C	COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_5701951_4	1123261.AXDW01000001_gene1348	1.091e-59	214.0	COG1309@1|root,COG1309@2|Bacteria,1MUJ5@1224|Proteobacteria,1RN9W@1236|Gammaproteobacteria,1X3N6@135614|Xanthomonadales	135614|Xanthomonadales	K	transcriptional regulator	fabR	-	-	ko:K22105	-	-	-	-	ko00000,ko03000	-	-	-	TetR_N
DYD3_k127_5701951_1	1304878.AUGD01000001_gene338	3.582e-144	462.0	COG0491@1|root,COG0491@2|Bacteria,1MURA@1224|Proteobacteria,2TR1F@28211|Alphaproteobacteria,3JQYX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_5701951_5	443598.AUFA01000001_gene1101	8.074e-43	160.0	COG0640@1|root,COG0640@2|Bacteria,1N72Q@1224|Proteobacteria,2UFSY@28211|Alphaproteobacteria,3K0EG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	nolR	GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044212,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K22042	-	-	-	-	ko00000,ko03000	-	-	-	HTH_5
DYD3_k127_5701951_6	1205680.CAKO01000029_gene5224	6.323e-33	130.0	COG0607@1|root,COG0607@2|Bacteria,1RDIR@1224|Proteobacteria,2U820@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Protein of unknown function (DUF2892)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2892,Rhodanese
DYD3_k127_5701951_2	1114964.L485_09160	1.195e-86	294.0	COG0730@1|root,COG0730@2|Bacteria,1MVBS@1224|Proteobacteria,2TQW0@28211|Alphaproteobacteria,2JZVA@204457|Sphingomonadales	204457|Sphingomonadales	S	membrane transporter protein	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
DYD3_k127_5701951_0	1333998.M2A_2862	7.526e-149	481.0	COG3146@1|root,COG3146@2|Bacteria,1MU35@1224|Proteobacteria,2TS5I@28211|Alphaproteobacteria,4BPKZ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Peptidogalycan biosysnthesis/recognition	MA20_36195	-	-	ko:K09919	-	-	-	-	ko00000	-	-	-	FemAB_like
DYD3_k127_5701951_3	485913.Krac_5356	7.136e-82	281.0	COG1028@1|root,COG1028@2|Bacteria,2G5KB@200795|Chloroflexi	200795|Chloroflexi	IQ	PFAM short-chain dehydrogenase reductase SDR	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_5701951_8	1380355.JNIJ01000028_gene670	2.441e-09	58.0	COG0584@1|root,COG0584@2|Bacteria,1MU8H@1224|Proteobacteria,2TV1D@28211|Alphaproteobacteria,3JR0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	glycerophosphoryl diester phosphodiesterase	ugpQ	-	3.1.4.46	ko:K01126	ko00564,map00564	-	R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000	-	-	-	GDPD
DYD3_k127_5726663_4	269482.Bcep1808_0751	4.35e-48	175.0	COG3791@1|root,COG3791@2|Bacteria,1N6S5@1224|Proteobacteria,2VWNN@28216|Betaproteobacteria,1KFNP@119060|Burkholderiaceae	28216|Betaproteobacteria	S	PFAM glutathione-dependent formaldehyde-activating GFA	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_5726663_1	1385515.N791_12115	7.923e-126	426.0	COG2982@1|root,COG2982@2|Bacteria,1MUAN@1224|Proteobacteria,1RNZM@1236|Gammaproteobacteria,1X4Z4@135614|Xanthomonadales	135614|Xanthomonadales	M	protein involved in outer membrane biogenesis	asmA	-	-	ko:K07290	-	-	-	-	ko00000	9.B.121	-	-	AsmA
DYD3_k127_5726663_3	648885.KB316283_gene3545	1.476e-65	235.0	2DSP9@1|root,33GWM@2|Bacteria,1NIUN@1224|Proteobacteria,2VEPA@28211|Alphaproteobacteria,1JTRD@119045|Methylobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5726663_2	1150469.RSPPHO_01882	1.107e-100	341.0	COG1177@1|root,COG1177@2|Bacteria,1MUQD@1224|Proteobacteria,2TS3C@28211|Alphaproteobacteria,2JQRG@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02053	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
DYD3_k127_5726663_0	269796.Rru_A2046	1.073e-165	529.0	COG1176@1|root,COG1176@2|Bacteria,1MU1Y@1224|Proteobacteria,2TTJ6@28211|Alphaproteobacteria,2JQGS@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02054	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
DYD3_k127_5731621_3	279714.FuraDRAFT_2597	8.292e-37	141.0	COG0554@1|root,COG0554@2|Bacteria,1MUP7@1224|Proteobacteria,2VICH@28216|Betaproteobacteria,2KQ7G@206351|Neisseriales	206351|Neisseriales	C	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	glpK	GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615	2.7.1.30	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	-	R00847	RC00002,RC00017	ko00000,ko00001,ko01000,ko04147	-	-	-	FGGY_C,FGGY_N
DYD3_k127_5731621_1	1380390.JIAT01000010_gene4310	4.851e-45	177.0	COG4667@1|root,COG4667@2|Bacteria,2I8R7@201174|Actinobacteria,4CTB7@84995|Rubrobacteria	84995|Rubrobacteria	S	Patatin-like phospholipase	-	-	-	-	-	-	-	-	-	-	-	-	Patatin
DYD3_k127_5731621_0	511062.GU3_14665	3.05e-48	191.0	COG0596@1|root,COG0596@2|Bacteria,1MXCB@1224|Proteobacteria,1SVAQ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5731621_2	388051.AUFE01000066_gene3896	5.729e-41	160.0	COG2124@1|root,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,2VIRM@28216|Betaproteobacteria,1K55M@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
DYD3_k127_5742996_5	414684.RC1_2181	1.445e-89	302.0	COG0175@1|root,COG0175@2|Bacteria,1MXUR@1224|Proteobacteria,2U5AP@28211|Alphaproteobacteria,2JRP6@204441|Rhodospirillales	204441|Rhodospirillales	EH	Reduction of activated sulfate into sulfite	cysH	-	1.8.4.10,1.8.4.8	ko:K00390	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R02021	RC00007,RC02862	ko00000,ko00001,ko00002,ko01000	-	-	-	PAPS_reduct
DYD3_k127_5742996_6	402881.Plav_2776	3.489e-51	187.0	COG1648@1|root,COG1648@2|Bacteria,1N5PF@1224|Proteobacteria,2UAHG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Sirohaem biosynthesis protein central	-	-	1.3.1.76,4.99.1.4	ko:K02304	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02864,R03947	RC01012,RC01034	ko00000,ko00001,ko00002,ko01000	-	-	-	NAD_binding_7,Sirohm_synth_M
DYD3_k127_5742996_7	1333998.M2A_2892	1.383e-23	102.0	COG1886@1|root,COG1886@2|Bacteria,1N1JC@1224|Proteobacteria,2UC3S@28211|Alphaproteobacteria,4BSVP@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	NU	Type III flagellar switch regulator (C-ring) FliN C-term	QU41_23035	-	-	ko:K02417	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FliMN_C
DYD3_k127_5742996_4	224914.BMEII0678	3.928e-97	322.0	COG0321@1|root,COG0321@2|Bacteria,1MU6A@1224|Proteobacteria,2TRXJ@28211|Alphaproteobacteria,1J2DW@118882|Brucellaceae	28211|Alphaproteobacteria	H	Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate	lipB	GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564	2.3.1.181	ko:K03801	ko00785,ko01100,map00785,map01100	-	R07766,R07769	RC00039,RC00992,RC02867	ko00000,ko00001,ko01000	-	-	-	BPL_LplA_LipB
DYD3_k127_5742996_1	420324.KI912090_gene7092	1.873e-172	549.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,1JSDR@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	PFAM L-carnitine dehydratase bile acid-inducible protein F	caiB	GO:0003674,GO:0003824,GO:0008410,GO:0016740,GO:0016782,GO:0047369	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
DYD3_k127_5742996_0	1131814.JAFO01000001_gene3009	2.508e-211	662.0	COG1960@1|root,COG1960@2|Bacteria,1MUK0@1224|Proteobacteria,2TSAC@28211|Alphaproteobacteria,3EY8S@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Acyl-CoA dehydrogenase, middle domain	-	-	1.3.8.6	ko:K00252	ko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130	M00032	R02487,R02488,R10074	RC00052,RC00156	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_5742996_3	1211115.ALIQ01000244_gene3733	5.748e-104	346.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,3NCCK@45404|Beijerinckiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5742996_2	1238182.C882_0097	7.344e-169	540.0	COG0624@1|root,COG0624@2|Bacteria,1MW2W@1224|Proteobacteria,2TQYZ@28211|Alphaproteobacteria,2JPP8@204441|Rhodospirillales	204441|Rhodospirillales	E	Peptidase dimerisation domain	-	-	3.5.1.16	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R00669,R09107	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_5742996_8	59538.XP_005967757.1	3.264e-23	109.0	2D5Q0@1|root,2SZ8B@2759|Eukaryota	2759|Eukaryota	S	Autoinducer binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Autoind_bind,GerE
DYD3_k127_5742996_9	13690.CP98_03080	0.0001978	49.0	COG3916@1|root,COG3916@2|Bacteria,1RB3V@1224|Proteobacteria,2TV0R@28211|Alphaproteobacteria,2KD92@204457|Sphingomonadales	204457|Sphingomonadales	H	Autoinducer synthase	-	-	-	-	-	-	-	-	-	-	-	-	Autoind_synth
DYD3_k127_5755346_9	1121033.AUCF01000006_gene4297	8.586e-61	213.0	COG0743@1|root,COG0743@2|Bacteria,1MU4G@1224|Proteobacteria,2TSD1@28211|Alphaproteobacteria,2JQ6Y@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)	dxr	-	1.1.1.267	ko:K00099	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05688	RC01452	ko00000,ko00001,ko00002,ko01000	-	-	-	DXPR_C,DXP_redisom_C,DXP_reductoisom
DYD3_k127_5755346_4	1121033.AUCF01000006_gene4296	3.875e-121	399.0	COG0750@1|root,COG0750@2|Bacteria,1MU91@1224|Proteobacteria,2TQXJ@28211|Alphaproteobacteria,2JPKM@204441|Rhodospirillales	204441|Rhodospirillales	M	zinc metalloprotease	rseP	-	-	ko:K11749	ko02024,ko04112,map02024,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	PDZ,PDZ_2,Peptidase_M50
DYD3_k127_5755346_0	1380394.JADL01000005_gene5532	3.783e-279	880.0	COG4775@1|root,COG4775@2|Bacteria,1MU0D@1224|Proteobacteria,2TR7W@28211|Alphaproteobacteria,2JQIV@204441|Rhodospirillales	204441|Rhodospirillales	M	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	bamA	-	-	ko:K07277	-	-	-	-	ko00000,ko02000,ko03029	1.B.33	-	-	Bac_surface_Ag,POTRA
DYD3_k127_5755346_12	1380394.JADL01000005_gene5531	1.519e-14	81.0	COG2825@1|root,COG2825@2|Bacteria,1NAN5@1224|Proteobacteria,2UGJF@28211|Alphaproteobacteria,2JU0C@204441|Rhodospirillales	204441|Rhodospirillales	M	COG2825 Outer membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	OmpH
DYD3_k127_5755346_6	1316936.K678_04377	1.493e-102	346.0	COG1044@1|root,COG1044@2|Bacteria,1MUX6@1224|Proteobacteria,2TS8U@28211|Alphaproteobacteria,2JPQ0@204441|Rhodospirillales	204441|Rhodospirillales	I	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxD	-	2.3.1.191	ko:K02536	ko00540,ko01100,map00540,map01100	M00060	R04550	RC00039,RC00166	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Hexapep,Hexapep_2,LpxD
DYD3_k127_5755346_10	1316936.K678_04382	1.091e-59	212.0	COG0764@1|root,COG0764@2|Bacteria,1RH2T@1224|Proteobacteria,2U7G4@28211|Alphaproteobacteria,2JS3T@204441|Rhodospirillales	204441|Rhodospirillales	I	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs	fabZ	-	4.2.1.59	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121	RC00831,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FabA
DYD3_k127_5755346_7	1528106.JRJE01000031_gene3598	2.461e-99	332.0	COG1043@1|root,COG1043@2|Bacteria,1MUHQ@1224|Proteobacteria,2TRK9@28211|Alphaproteobacteria,2JPHM@204441|Rhodospirillales	204441|Rhodospirillales	I	Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxA	-	2.3.1.129	ko:K00677	ko00540,ko01100,ko01503,map00540,map01100,map01503	M00060	R04567	RC00039,RC00055	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Acetyltransf_11,Hexapep,Hexapep_2
DYD3_k127_5755346_8	314260.PB2503_02422	4.217e-66	236.0	COG3494@1|root,COG3494@2|Bacteria,1MWTH@1224|Proteobacteria,2U5B7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1009)	cdsA2	-	-	ko:K09949	-	-	-	-	ko00000	-	-	-	DUF1009
DYD3_k127_5755346_5	414684.RC1_1194	3.44e-110	374.0	COG0763@1|root,COG0763@2|Bacteria,1MVBI@1224|Proteobacteria,2TSEA@28211|Alphaproteobacteria,2JQPI@204441|Rhodospirillales	204441|Rhodospirillales	M	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxB	-	2.4.1.182	ko:K00748	ko00540,ko01100,map00540,map01100	M00060	R04606	RC00005,RC00059	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT19	-	LpxB
DYD3_k127_5755346_3	1122604.JONR01000047_gene2047	2.373e-125	417.0	COG2207@1|root,COG2207@2|Bacteria,1MX23@1224|Proteobacteria,1RPJC@1236|Gammaproteobacteria,1X63A@135614|Xanthomonadales	135614|Xanthomonadales	K	Arabinose-binding domain of AraC transcription regulator, N-term	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
DYD3_k127_5755346_2	1415780.JPOG01000001_gene1061	6.46e-141	454.0	COG3000@1|root,COG3000@2|Bacteria,1NR7X@1224|Proteobacteria,1RQDX@1236|Gammaproteobacteria,1X4DB@135614|Xanthomonadales	135614|Xanthomonadales	I	Fatty acid hydroxylase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	FA_hydroxylase
DYD3_k127_5755346_1	266779.Meso_1646	9.523e-224	699.0	COG0372@1|root,COG0372@2|Bacteria,1MUKX@1224|Proteobacteria,2TS63@28211|Alphaproteobacteria,43HIC@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	Belongs to the citrate synthase family	gltA	-	2.3.3.1	ko:K01647	ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351	RC00004,RC00067	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Citrate_synt
DYD3_k127_5755346_11	1123229.AUBC01000014_gene2887	1.501e-30	124.0	COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,2TRSU@28211|Alphaproteobacteria,3JS6J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
DYD3_k127_5766655_4	1041142.ATTP01000022_gene5806	1.523e-173	567.0	COG0397@1|root,COG0397@2|Bacteria,1MVK3@1224|Proteobacteria,2TT84@28211|Alphaproteobacteria,4B8PF@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0061 (SELO) family	-	-	-	ko:K08997	-	-	-	-	ko00000	-	-	-	UPF0061
DYD3_k127_5766655_0	1082932.ATCR1_12428	0.0	1082.0	COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,2TT05@28211|Alphaproteobacteria,4BDF0@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	flavoprotein involved in K transport	-	-	-	ko:K07222	-	-	-	-	ko00000	-	-	-	FMO-like,NAD_binding_8,Pyr_redox_3,SnoaL_2
DYD3_k127_5766655_1	1038860.AXAP01000006_gene6699	1.232e-295	917.0	COG3284@1|root,COG3284@2|Bacteria,1NRG5@1224|Proteobacteria,2TR0H@28211|Alphaproteobacteria,3JS68@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KQ	Sigma-54 interaction domain	acoR	-	-	ko:K21405	-	-	-	-	ko00000,ko03000	-	-	-	GAF,HTH_8,Sigma54_activ_2,Sigma54_activat
DYD3_k127_5766655_14	1040983.AXAE01000012_gene2095	2.889e-20	93.0	COG3224@1|root,COG3224@2|Bacteria,1N2DP@1224|Proteobacteria,2UBSR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	EthD domain	-	-	-	-	-	-	-	-	-	-	-	-	EthD
DYD3_k127_5766655_3	1090320.KB900605_gene2333	3.849e-285	881.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,2JZVD@204457|Sphingomonadales	204457|Sphingomonadales	C	belongs to the aldehyde dehydrogenase family	-	-	-	ko:K00138	ko00010,ko00620,ko01100,ko01110,ko01120,map00010,map00620,map01100,map01110,map01120	-	R00711	RC00047	ko00000,ko00001,ko01000	-	-	-	Aldedh
DYD3_k127_5766655_11	1125973.JNLC01000010_gene1125	1.455e-57	204.0	COG3564@1|root,COG3564@2|Bacteria,1RGYH@1224|Proteobacteria,2U9NU@28211|Alphaproteobacteria,3JYT2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF779)	-	-	-	ko:K09959	-	-	-	-	ko00000	-	-	-	DUF779
DYD3_k127_5766655_8	395963.Bind_3322	1.364e-93	316.0	COG1235@1|root,COG1235@2|Bacteria,1MWI5@1224|Proteobacteria,2TQX4@28211|Alphaproteobacteria,3NAM6@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	May be involved in the transport of PQQ or its precursor to the periplasm	pqqB	-	-	ko:K06136	-	-	-	-	ko00000	-	-	-	Lactamase_B_2
DYD3_k127_5766655_7	290398.Csal_0846	1.096e-108	372.0	COG5424@1|root,COG5424@2|Bacteria,1MW7G@1224|Proteobacteria,1RP1V@1236|Gammaproteobacteria,1XH2V@135619|Oceanospirillales	135619|Oceanospirillales	H	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ	pqqC	-	1.3.3.11	ko:K06137	-	-	-	-	ko00000,ko01000	-	-	-	TENA_THI-4
DYD3_k127_5766655_5	1380394.JADL01000001_gene2404	2.322e-144	472.0	COG0535@1|root,COG0535@2|Bacteria,1MUQP@1224|Proteobacteria,2TTS5@28211|Alphaproteobacteria,2JR0C@204441|Rhodospirillales	204441|Rhodospirillales	S	peptidyl-tyrosine modification	pqqE	-	-	ko:K06139	-	-	-	-	ko00000	-	-	-	Fer4_12,Radical_SAM,SPASM
DYD3_k127_5766655_6	1301098.PKB_2775	7.697e-138	447.0	COG3391@1|root,COG3391@2|Bacteria,1P862@1224|Proteobacteria,1RQZK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	40-residue YVTN family beta-propeller repeat	pedA	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_D1,Lactonase
DYD3_k127_5766655_13	1437882.AZRU01000003_gene1667	1.428e-52	189.0	COG2010@1|root,COG2010@2|Bacteria,1RH1S@1224|Proteobacteria,1S42K@1236|Gammaproteobacteria,1YFYB@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	exaB	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
DYD3_k127_5766655_12	1238182.C882_0860	2.522e-54	201.0	COG0834@1|root,COG0834@2|Bacteria,1RIGN@1224|Proteobacteria,2UA60@28211|Alphaproteobacteria,2JWET@204441|Rhodospirillales	204441|Rhodospirillales	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_3
DYD3_k127_5766655_10	1123256.KB907932_gene2897	3.472e-58	220.0	COG5501@1|root,COG5501@2|Bacteria,1RBHP@1224|Proteobacteria,1RZ0S@1236|Gammaproteobacteria,1X6WY@135614|Xanthomonadales	135614|Xanthomonadales	S	Sulphur oxidation protein SoxZ	-	-	-	-	-	-	-	-	-	-	-	-	SoxY,SoxZ
DYD3_k127_5766655_9	1304883.KI912532_gene1828	9.009e-90	306.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2VN1Z@28216|Betaproteobacteria,2KXKA@206389|Rhodocyclales	206389|Rhodocyclales	S	COG0491 Zn-dependent hydrolases, including glyoxylases	-	-	-	ko:K01138	-	-	-	-	ko00000,ko01000	-	-	-	Lactamase_B
DYD3_k127_5766655_2	748280.NH8B_3445	6.917e-288	895.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2VHVH@28216|Betaproteobacteria	28216|Betaproteobacteria	G	TIGRFAM PQQ-dependent dehydrogenase, methanol ethanol family	-	-	1.1.2.8	ko:K00114	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	PQQ
DYD3_k127_5788794_6	441620.Mpop_4549	2.063e-61	239.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,1JR4W@119045|Methylobacteriaceae	28211|Alphaproteobacteria	NT	PFAM histidine kinase HAMP region domain protein	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	4HB_MCP_1,HAMP,MCPsignal
DYD3_k127_5788794_5	1121033.AUCF01000001_gene2473	1.822e-63	229.0	COG1280@1|root,COG1280@2|Bacteria,1MWA1@1224|Proteobacteria,2U0HE@28211|Alphaproteobacteria,2JT8Y@204441|Rhodospirillales	204441|Rhodospirillales	E	LysE type translocator	-	-	-	-	-	-	-	-	-	-	-	-	LysE
DYD3_k127_5788794_8	1197130.BAFM01000004_gene982	8.206e-59	214.0	arCOG01792@1|root,arCOG01792@2157|Archaea,2XYKQ@28890|Euryarchaeota,23W9T@183963|Halobacteria	183963|Halobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_5788794_0	570967.JMLV01000002_gene1537	5.067e-229	714.0	COG0137@1|root,COG0137@2|Bacteria,1MV0Y@1224|Proteobacteria,2TTGS@28211|Alphaproteobacteria,2JPZD@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the argininosuccinate synthase family. Type 1 subfamily	argG	-	6.3.4.5	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	M00029,M00844,M00845	R01954	RC00380,RC00629	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Arginosuc_synth
DYD3_k127_5788794_16	1038859.AXAU01000006_gene5574	7.486e-31	133.0	COG2050@1|root,COG2050@2|Bacteria,1R71D@1224|Proteobacteria,2U0RJ@28211|Alphaproteobacteria,3JXK8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	protein possibly involved in aromatic compounds catabolism	-	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
DYD3_k127_5788794_11	1366050.N234_10555	5.925e-43	162.0	COG1733@1|root,COG1733@2|Bacteria,1RM11@1224|Proteobacteria,2VT6Q@28216|Betaproteobacteria,1K90F@119060|Burkholderiaceae	28216|Betaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_5788794_1	1123256.KB907938_gene568	1.735e-187	598.0	COG0154@1|root,COG0154@2|Bacteria,1MWWQ@1224|Proteobacteria,1RMKH@1236|Gammaproteobacteria,1X390@135614|Xanthomonadales	135614|Xanthomonadales	J	Amidase	-	-	-	-	-	-	-	-	-	-	-	-	Amidase
DYD3_k127_5788794_14	316057.RPD_4182	1.085e-35	139.0	COG2944@1|root,COG2944@2|Bacteria,1N05Y@1224|Proteobacteria,2UECS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	ko:K07726	-	-	-	-	ko00000,ko03000	-	-	-	HTH_31
DYD3_k127_5788794_13	107635.AZUO01000001_gene2915	3.903e-40	152.0	COG4737@1|root,COG4737@2|Bacteria,1NAIM@1224|Proteobacteria,2UFMQ@28211|Alphaproteobacteria,36YVW@31993|Methylocystaceae	28211|Alphaproteobacteria	S	RelE toxin of RelE / RelB toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	RelE
DYD3_k127_5788794_3	1380394.JADL01000002_gene1108	5.541e-171	544.0	COG0820@1|root,COG0820@2|Bacteria,1MUYK@1224|Proteobacteria,2TQT3@28211|Alphaproteobacteria,2JQBS@204441|Rhodospirillales	204441|Rhodospirillales	J	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	rlmN	-	2.1.1.192	ko:K06941	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Radical_SAM
DYD3_k127_5788794_12	1121033.AUCF01000040_gene793	1.56e-42	161.0	COG5342@1|root,COG5342@2|Bacteria,1R46Z@1224|Proteobacteria,2U5KW@28211|Alphaproteobacteria,2JSY4@204441|Rhodospirillales	204441|Rhodospirillales	S	invasion associated locus B	-	-	-	-	-	-	-	-	-	-	-	-	IalB
DYD3_k127_5788794_7	1397666.RS24_01483	2.559e-59	212.0	COG1595@1|root,COG1595@2|Bacteria,1RHRR@1224|Proteobacteria,2U9G0@28211|Alphaproteobacteria,4BQM8@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	rpoE	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4,Sigma70_r4_2
DYD3_k127_5788794_10	570952.ATVH01000015_gene1285	8.205e-44	171.0	COG3806@1|root,COG3806@2|Bacteria,1RI6T@1224|Proteobacteria,2TVH9@28211|Alphaproteobacteria,2JSRN@204441|Rhodospirillales	204441|Rhodospirillales	T	ChrR Cupin-like domain	chrR	-	-	ko:K07167	-	-	-	-	ko00000	-	-	-	Cupin_7,zf-HC2
DYD3_k127_5788794_9	1380391.JIAS01000011_gene5327	2.34e-55	202.0	COG1633@1|root,COG1633@2|Bacteria,1R5K9@1224|Proteobacteria,2US42@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4439)	-	-	-	-	-	-	-	-	-	-	-	-	Ferritin_2
DYD3_k127_5788794_15	522306.CAP2UW1_3678	1.13e-31	128.0	COG3474@1|root,COG3474@2|Bacteria,1N15D@1224|Proteobacteria,2VWUA@28216|Betaproteobacteria	28216|Betaproteobacteria	C	Cytochrome c	-	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
DYD3_k127_5788794_18	443152.MDG893_10886	5.61e-22	111.0	COG3832@1|root,COG3832@2|Bacteria,1N94B@1224|Proteobacteria,1SFH4@1236|Gammaproteobacteria,46BQD@72275|Alteromonadaceae	1236|Gammaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_5788794_2	1177928.TH2_08781	2.119e-173	548.0	COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2TSM8@28211|Alphaproteobacteria,2JQG4@204441|Rhodospirillales	204441|Rhodospirillales	CH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family	gyaR	-	1.1.1.26	ko:K00015	ko00630,ko01100,ko01110,ko01120,map00630,map01100,map01110,map01120	-	R00717,R01388	RC00031,RC00042	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_5788794_17	1537715.JQFJ01000002_gene776	1.737e-28	121.0	COG3807@1|root,COG3807@2|Bacteria,1RHM2@1224|Proteobacteria,2UA1R@28211|Alphaproteobacteria,2K42W@204457|Sphingomonadales	204457|Sphingomonadales	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	SH3_4
DYD3_k127_5788794_4	570952.ATVH01000015_gene1288	5.602e-73	254.0	COG4448@1|root,COG4448@2|Bacteria,1R4NH@1224|Proteobacteria,2TV9J@28211|Alphaproteobacteria,2JQI6@204441|Rhodospirillales	204441|Rhodospirillales	E	L-asparaginase II	-	-	-	-	-	-	-	-	-	-	-	-	Asparaginase_II
DYD3_k127_5790331_3	402881.Plav_2790	4.84e-73	249.0	COG1073@1|root,COG1073@2|Bacteria,1MUCD@1224|Proteobacteria,2U21F@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	X-Pro dipeptidyl-peptidase (S15 family)	-	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	AXE1,Hydrolase_4,Peptidase_S15
DYD3_k127_5790331_2	402881.Plav_0688	4.606e-143	465.0	COG0404@1|root,COG0404@2|Bacteria,1MV96@1224|Proteobacteria,2TRN4@28211|Alphaproteobacteria,1JNE3@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Glycine cleavage T-protein C-terminal barrel domain	gcvT	GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008483,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0032991,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204	2.1.2.10	ko:K00605	ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200	M00532	R01221,R02300,R04125	RC00022,RC00069,RC00183,RC02834	ko00000,ko00001,ko00002,ko01000	-	-	-	GCV_T,GCV_T_C
DYD3_k127_5790331_4	1248916.ANFY01000011_gene1128	2.4e-45	167.0	COG0509@1|root,COG0509@2|Bacteria,1RGV7@1224|Proteobacteria,2U9BY@28211|Alphaproteobacteria,2K5E0@204457|Sphingomonadales	204457|Sphingomonadales	E	The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein	gcvH	-	-	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	M00532	R01221	RC00022,RC02834	ko00000,ko00001,ko00002	-	-	-	GCV_H
DYD3_k127_5790331_0	1380394.JADL01000002_gene1203	4.037e-188	601.0	COG0403@1|root,COG0403@2|Bacteria,1MVC1@1224|Proteobacteria,2TR6C@28211|Alphaproteobacteria,2JPH3@204441|Rhodospirillales	204441|Rhodospirillales	E	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor	gcvPA	-	1.4.4.2	ko:K00282	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	-	R01221,R03425	RC00022,RC00929,RC02834,RC02880	ko00000,ko00001,ko01000	-	-	-	GDC-P
DYD3_k127_5790331_1	1282876.BAOK01000001_gene2904	3.143e-182	577.0	COG1003@1|root,COG1003@2|Bacteria,1MUDP@1224|Proteobacteria,2TSFF@28211|Alphaproteobacteria,4BPWY@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor	gcvP	-	1.4.4.2	ko:K00281,ko:K00283	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	M00532	R01221,R03425	RC00022,RC00929,RC02834,RC02880	ko00000,ko00001,ko00002,ko01000	-	-	-	Aminotran_5,GDC-P
DYD3_k127_5809830_7	1232443.BAIA02000057_gene1341	6.78e-46	177.0	COG0584@1|root,COG0584@2|Bacteria,1V1PF@1239|Firmicutes,25BIW@186801|Clostridia	186801|Clostridia	C	Psort location Cytoplasmic, score 8.87	-	-	-	-	-	-	-	-	-	-	-	-	GDPD
DYD3_k127_5809830_6	1121271.AUCM01000002_gene3968	5.139e-57	202.0	COG0251@1|root,COG0251@2|Bacteria,1RHMZ@1224|Proteobacteria,2U9H4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	translation initiation inhibitor, yjgF family	-	-	-	-	-	-	-	-	-	-	-	-	YjgF_endoribonc
DYD3_k127_5809830_0	1122132.AQYH01000010_gene4254	3.522e-170	541.0	COG2957@1|root,COG2957@2|Bacteria,1MX65@1224|Proteobacteria,2U0RR@28211|Alphaproteobacteria,4BJEN@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Porphyromonas-type peptidyl-arginine deiminase	aguA	-	3.5.3.12	ko:K10536	ko00330,ko01100,map00330,map01100	-	R01416	RC00177	ko00000,ko00001,ko01000	-	-	-	PAD_porph
DYD3_k127_5809830_8	557598.LHK_00896	3.932e-12	70.0	COG1525@1|root,COG1525@2|Bacteria,1NNMW@1224|Proteobacteria	1224|Proteobacteria	L	Excalibur calcium-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Excalibur
DYD3_k127_5809830_1	1122132.AQYH01000010_gene4257	2.958e-166	526.0	COG0388@1|root,COG0388@2|Bacteria,1MXG5@1224|Proteobacteria,2TVCS@28211|Alphaproteobacteria,4BDES@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	aguB	-	3.5.1.53	ko:K12251	ko00330,ko01100,map00330,map01100	-	R01152	RC00096	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
DYD3_k127_5809830_2	1280953.HOC_07529	5.096e-141	458.0	COG0654@1|root,COG0654@2|Bacteria,1MWWT@1224|Proteobacteria,2TRZP@28211|Alphaproteobacteria,43WJE@69657|Hyphomonadaceae	28211|Alphaproteobacteria	CH	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	-	-	1.14.13.1	ko:K00480	ko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220	-	R00818,R05632,R06915,R06936,R06939	RC00389	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
DYD3_k127_5809830_5	246197.MXAN_3240	3.507e-65	225.0	COG1846@1|root,COG1846@2|Bacteria,1N7G0@1224|Proteobacteria,42VBH@68525|delta/epsilon subdivisions,2WRGD@28221|Deltaproteobacteria,2Z1KH@29|Myxococcales	28221|Deltaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_5809830_3	1205680.CAKO01000008_gene4209	2.191e-116	379.0	COG5507@1|root,COG5507@2|Bacteria,1RHC1@1224|Proteobacteria,2UC7A@28211|Alphaproteobacteria,2JSSV@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1428)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1428
DYD3_k127_5809830_4	1150626.PHAMO_200062	6.999e-96	318.0	COG2201@1|root,COG2201@2|Bacteria,1R1U5@1224|Proteobacteria,2TZ9W@28211|Alphaproteobacteria,2JWB2@204441|Rhodospirillales	204441|Rhodospirillales	NT	CheB methylesterase	-	-	-	-	-	-	-	-	-	-	-	-	CheB_methylest
DYD3_k127_5819685_3	1122603.ATVI01000008_gene2357	1.109e-12	71.0	COG4447@1|root,COG4447@2|Bacteria,1RF2F@1224|Proteobacteria,1S5HY@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	protein related to plant photosystem II stability assembly factor	-	-	-	-	-	-	-	-	-	-	-	-	PSII_BNR
DYD3_k127_5819685_1	402881.Plav_1158	8.31e-166	542.0	COG3419@1|root,COG3419@2|Bacteria,1R6MQ@1224|Proteobacteria	1224|Proteobacteria	NU	Tfp pilus assembly protein tip-associated adhesin	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5819685_0	1122604.JONR01000021_gene555	1.722e-209	661.0	COG2834@1|root,COG2834@2|Bacteria,1Q1FQ@1224|Proteobacteria,1RYIY@1236|Gammaproteobacteria,1X2YN@135614|Xanthomonadales	135614|Xanthomonadales	M	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_5819685_2	1415779.JOMH01000001_gene726	3.215e-23	100.0	COG0543@1|root,COG0633@1|root,COG0543@2|Bacteria,COG0633@2|Bacteria,1MV72@1224|Proteobacteria,1RN9X@1236|Gammaproteobacteria,1XA5X@135614|Xanthomonadales	135614|Xanthomonadales	CH	Oxidoreductase FAD-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_5827999_1	1192868.CAIU01000015_gene1906	8.097e-190	604.0	COG0028@1|root,COG0028@2|Bacteria,1MWVW@1224|Proteobacteria,2TTH5@28211|Alphaproteobacteria,43IQQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD3_k127_5827999_0	1089551.KE386572_gene1761	1.075e-288	907.0	COG1231@1|root,COG1231@2|Bacteria,1MV82@1224|Proteobacteria,2TVEF@28211|Alphaproteobacteria,4BQYW@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Flavin containing amine oxidoreductase	iaaM	-	1.13.12.3	ko:K00466	ko00380,map00380	-	R00679	RC00213	ko00000,ko00001,ko01000	-	-	-	Amino_oxidase
DYD3_k127_5827999_7	1089551.KE386572_gene1763	3.177e-93	313.0	COG0388@1|root,COG0388@2|Bacteria,1RA15@1224|Proteobacteria,2U1MJ@28211|Alphaproteobacteria,4BR7D@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	CN_hydrolase
DYD3_k127_5827999_6	1005395.CSV86_13760	2.49e-116	385.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,1RPQC@1236|Gammaproteobacteria,1YWCZ@136845|Pseudomonas putida group	1236|Gammaproteobacteria	C	Alcohol dehydrogenase GroES-like domain	adhP	GO:0003674,GO:0003824,GO:0004022,GO:0005488,GO:0006081,GO:0006117,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009636,GO:0009987,GO:0010033,GO:0016491,GO:0016614,GO:0016616,GO:0033554,GO:0042221,GO:0042493,GO:0043167,GO:0043169,GO:0044237,GO:0044248,GO:0045471,GO:0046185,GO:0046187,GO:0046677,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0055114,GO:0071704,GO:0097305,GO:1901575,GO:1901700	1.1.1.1	ko:K00001,ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	iECP_1309.ECP_1480	ADH_N,ADH_zinc_N
DYD3_k127_5827999_2	1125973.JNLC01000016_gene2710	1.632e-168	535.0	COG0010@1|root,COG0010@2|Bacteria,1MVFH@1224|Proteobacteria,2TQSZ@28211|Alphaproteobacteria,3JZ06@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Arginase family	-	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006807,GO:0008150,GO:0008152,GO:0008783,GO:0009058,GO:0016787,GO:0016810,GO:0016813,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097055,GO:1901160,GO:1901162,GO:1901564,GO:1901566,GO:1901576	3.5.3.11	ko:K01480	ko00330,ko01100,map00330,map01100	M00133	R01157	RC00024,RC00329	ko00000,ko00001,ko00002,ko01000	-	-	-	Arginase
DYD3_k127_5827999_5	1336249.JADW01000007_gene3275	1.399e-116	396.0	COG1177@1|root,COG1177@2|Bacteria,1NGDC@1224|Proteobacteria,2U2G2@28211|Alphaproteobacteria,4BC8K@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	cysT	-	-	ko:K02053	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
DYD3_k127_5827999_4	266834.SMc01964	4.843e-127	419.0	COG1176@1|root,COG1176@2|Bacteria,1R47U@1224|Proteobacteria,2U0UW@28211|Alphaproteobacteria,4BAVQ@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02054	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
DYD3_k127_5827999_3	1116369.KB890024_gene145	3.663e-141	456.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,43J5A@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	TOBE domain	-	-	-	ko:K02052	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	ABC_tran,TOBE_2
DYD3_k127_5837752_5	395964.KE386496_gene532	2.186e-41	175.0	COG1231@1|root,COG1231@2|Bacteria,1MUPQ@1224|Proteobacteria,2TRVT@28211|Alphaproteobacteria,3NAD4@45404|Beijerinckiaceae	28211|Alphaproteobacteria	E	Flavin containing amine oxidoreductase	-	-	1.4.3.4	ko:K00274	ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034	M00135	R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354	RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
DYD3_k127_5837752_0	1121033.AUCF01000006_gene4073	0.0	1521.0	COG1305@1|root,COG4196@1|root,COG1305@2|Bacteria,COG4196@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,2JPVV@204441|Rhodospirillales	204441|Rhodospirillales	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,DUF2126,Transglut_core
DYD3_k127_5837752_1	1500257.JQNM01000004_gene85	2.64e-231	722.0	COG1819@1|root,COG1819@2|Bacteria,1R6PV@1224|Proteobacteria,2TUSF@28211|Alphaproteobacteria,4BDN1@82115|Rhizobiaceae	28211|Alphaproteobacteria	CG	UDP-glucoronosyl and UDP-glucosyl transferase	-	-	-	-	-	-	-	-	-	-	-	-	UDPGT
DYD3_k127_5837752_4	1437882.AZRU01000005_gene1370	9.332e-60	220.0	COG3450@1|root,COG3450@2|Bacteria,1RGQI@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF861)	-	-	-	ko:K06995	-	-	-	-	ko00000	-	-	-	Cupin_3
DYD3_k127_5837752_2	1500894.JQNN01000001_gene1409	8.205e-223	709.0	COG0531@1|root,COG0531@2|Bacteria,1R829@1224|Proteobacteria,2W0JF@28216|Betaproteobacteria	28216|Betaproteobacteria	E	Amino acid permease	-	-	-	-	-	-	-	-	-	-	-	-	AA_permease_2
DYD3_k127_5837752_3	1038867.AXAY01000023_gene4630	4.547e-163	520.0	COG0281@1|root,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,3JT6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Malic enzyme, NAD binding domain	-	-	1.1.1.40	ko:K00029	ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200	M00169,M00172	R00216	RC00105	ko00000,ko00001,ko00002,ko01000	-	-	-	Malic_M,malic
DYD3_k127_5845642_6	864073.HFRIS_018596	1.929e-08	56.0	COG2199@1|root,COG2199@2|Bacteria,1MUV8@1224|Proteobacteria,2VI6E@28216|Betaproteobacteria	28216|Betaproteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,PAS_8,PAS_9
DYD3_k127_5845642_5	314285.KT71_03397	3.161e-28	119.0	COG3753@1|root,COG3753@2|Bacteria,1QMBX@1224|Proteobacteria,1SF1B@1236|Gammaproteobacteria,1JAF1@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	Bacterial protein of unknown function (DUF937)	-	-	-	-	-	-	-	-	-	-	-	-	DUF937
DYD3_k127_5845642_4	1380394.JADL01000013_gene709	4.246e-37	145.0	COG4319@1|root,COG4319@2|Bacteria,1RD4M@1224|Proteobacteria,2TWUJ@28211|Alphaproteobacteria,2JT5M@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF3225)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3225
DYD3_k127_5845642_2	1125973.JNLC01000012_gene791	2.242e-107	353.0	COG1335@1|root,COG1335@2|Bacteria,1MV0W@1224|Proteobacteria,2TUVZ@28211|Alphaproteobacteria,3JTF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	MA20_17545	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_5845642_0	1168059.KB899087_gene473	2.106e-257	813.0	COG0659@1|root,COG0659@2|Bacteria,1MXA7@1224|Proteobacteria,2TV6Y@28211|Alphaproteobacteria,3F0U2@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	secondary active sulfate transmembrane transporter activity	MA20_17540	-	-	ko:K06901	-	-	-	-	ko00000,ko02000	2.A.1.40	-	-	-
DYD3_k127_5845642_1	1502851.FG93_00076	1.296e-190	605.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TU3V@28211|Alphaproteobacteria,3JRDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_22685	-	3.5.1.84,6.3.5.6,6.3.5.7	ko:K02433,ko:K19837	ko00791,ko00970,ko01100,ko01120,map00791,map00970,map01100,map01120	-	R03905,R04212,R05563	RC00010,RC01287	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
DYD3_k127_5845642_3	1122135.KB893145_gene1805	1.555e-52	186.0	COG0048@1|root,COG0048@2|Bacteria,1RCWY@1224|Proteobacteria,2U70K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit	rpsL	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02950	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosom_S12_S23
DYD3_k127_5856494_2	1122604.JONR01000063_gene3205	1.321e-58	217.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RSD3@1236|Gammaproteobacteria,1X9G1@135614|Xanthomonadales	135614|Xanthomonadales	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_5856494_0	1469613.JT55_13080	5.695e-90	307.0	COG0596@1|root,COG0596@2|Bacteria,1R32V@1224|Proteobacteria,2TZX2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5856494_1	358220.C380_15945	2.045e-73	257.0	COG0346@1|root,COG0346@2|Bacteria,1P5FR@1224|Proteobacteria,2VP8J@28216|Betaproteobacteria,4AEBT@80864|Comamonadaceae	28216|Betaproteobacteria	E	Glyoxalase bleomycin resistance protein dioxygenase	bphC	-	1.13.11.39,1.13.11.56	ko:K00462,ko:K14583	ko00361,ko00621,ko00626,ko01100,ko01120,ko01220,map00361,map00621,map00626,map01100,map01120,map01220	M00534,M00543	R03462,R04117,R05245,R07827	RC00387,RC01081,RC01306	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
DYD3_k127_5857600_3	1380391.JIAS01000012_gene4071	2.8e-163	522.0	COG1073@1|root,COG1765@1|root,COG1073@2|Bacteria,COG1765@2|Bacteria,1N2BT@1224|Proteobacteria,2TQN7@28211|Alphaproteobacteria,2JQYF@204441|Rhodospirillales	204441|Rhodospirillales	O	OsmC-like protein	-	-	-	ko:K06889,ko:K07397	-	-	-	-	ko00000	-	-	-	Hydrolase_4,OsmC
DYD3_k127_5857600_5	1449065.JMLL01000011_gene2273	5.586e-109	356.0	COG1028@1|root,COG1028@2|Bacteria,1PP5H@1224|Proteobacteria,2TTQV@28211|Alphaproteobacteria,43HD0@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	IQ	Short-chain dehydrogenase reductase SDR	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_5857600_6	391038.Bphy_3533	1.13e-74	259.0	COG1309@1|root,COG1309@2|Bacteria,1N6P0@1224|Proteobacteria,2VYIU@28216|Betaproteobacteria,1K1BH@119060|Burkholderiaceae	28216|Betaproteobacteria	K	regulatory protein TetR	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_5857600_0	1122604.JONR01000011_gene3624	4.289e-233	732.0	COG0654@1|root,COG0654@2|Bacteria,1MX9R@1224|Proteobacteria,1SYDP@1236|Gammaproteobacteria,1XCUU@135614|Xanthomonadales	135614|Xanthomonadales	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
DYD3_k127_5857600_1	395019.Bmul_5806	3.27e-173	556.0	COG0346@1|root,COG0346@2|Bacteria,1MVIQ@1224|Proteobacteria,2VSJC@28216|Betaproteobacteria,1K4R5@119060|Burkholderiaceae	28216|Betaproteobacteria	E	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_5857600_4	1122604.JONR01000011_gene3622	9.307e-156	497.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,1RPYA@1236|Gammaproteobacteria,1X44E@135614|Xanthomonadales	1236|Gammaproteobacteria	Q	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	-	-	-	-	-	-	-	-	-	-	-	-	DUF2437,FAA_hydrolase
DYD3_k127_5857600_2	1390370.O203_17145	4.502e-171	542.0	COG5285@1|root,COG5285@2|Bacteria,1PF68@1224|Proteobacteria,1RYF8@1236|Gammaproteobacteria,1YIHU@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_5857600_7	1356854.N007_04255	1.757e-26	118.0	COG3967@1|root,COG3967@2|Bacteria,1TT89@1239|Firmicutes,4HC2F@91061|Bacilli,27A5N@186823|Alicyclobacillaceae	91061|Bacilli	M	Enoyl-(Acyl carrier protein) reductase	-	-	-	ko:K14189	-	-	-	-	ko00000,ko01000	-	-	-	adh_short
DYD3_k127_5860269_6	1089551.KE386572_gene1575	1.867e-20	106.0	COG3409@1|root,COG3409@2|Bacteria	2|Bacteria	M	Peptidoglycan-binding domain 1 protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1906,LysM,PG_binding_1
DYD3_k127_5860269_4	1244869.H261_19706	6.035e-34	149.0	COG0265@1|root,COG0790@1|root,COG0265@2|Bacteria,COG0790@2|Bacteria,1RDHW@1224|Proteobacteria,2UUVF@28211|Alphaproteobacteria,2JXMN@204441|Rhodospirillales	204441|Rhodospirillales	O	Trypsin-like peptidase domain	-	-	-	-	-	-	-	-	-	-	-	-	Sel1,Trypsin_2
DYD3_k127_5860269_7	580332.Slit_0089	4.838e-12	70.0	COG2002@1|root,COG2002@2|Bacteria	2|Bacteria	K	toxin-antitoxin pair type II binding	-	-	-	-	-	-	-	-	-	-	-	-	MazE_antitoxin,PrlF_antitoxin
DYD3_k127_5860269_5	1458427.BAWN01000094_gene2208	3.346e-22	100.0	COG5611@1|root,COG5611@2|Bacteria,1N9JM@1224|Proteobacteria,2VWRE@28216|Betaproteobacteria,4AETJ@80864|Comamonadaceae	28216|Betaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_5860269_3	331869.BAL199_06519	4.616e-79	278.0	COG0225@1|root,COG0225@2|Bacteria,1NC84@1224|Proteobacteria,2TTDD@28211|Alphaproteobacteria,4BT86@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	msrA_1	-	1.8.4.11	ko:K07304	-	-	-	-	ko00000,ko01000	-	-	-	PMSR
DYD3_k127_5860269_2	395963.Bind_1406	5.135e-100	335.0	COG0697@1|root,COG0697@2|Bacteria,1PIF2@1224|Proteobacteria,2V9IQ@28211|Alphaproteobacteria,3NA7Z@45404|Beijerinckiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_5860269_0	1125973.JNLC01000018_gene2204	1.562e-223	698.0	COG4664@1|root,COG4664@2|Bacteria,1R4MZ@1224|Proteobacteria,2TQNR@28211|Alphaproteobacteria,3JTY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Tripartite ATP-independent periplasmic transporter, DctM component	-	-	-	-	-	-	-	-	-	-	-	-	DctM
DYD3_k127_5860269_1	639283.Snov_2117	2.53e-100	330.0	COG4665@1|root,COG4665@2|Bacteria,1RHBW@1224|Proteobacteria,2U4QB@28211|Alphaproteobacteria,3F1CI@335928|Xanthobacteraceae	28211|Alphaproteobacteria	Q	Tripartite ATP-independent periplasmic transporters, DctQ component	-	-	-	-	-	-	-	-	-	-	-	-	DctQ
DYD3_k127_5861217_0	78245.Xaut_2136	2.249e-176	560.0	COG4553@1|root,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,2TQXW@28211|Alphaproteobacteria,3EY0F@335928|Xanthobacteraceae	28211|Alphaproteobacteria	I	PHB de-polymerase C-terminus	MA20_01245	-	3.1.1.75	ko:K05973	ko00650,map00650	-	R05118	-	ko00000,ko00001,ko01000	-	-	-	PHB_depo_C
DYD3_k127_5861217_2	438753.AZC_0294	8.357e-102	336.0	COG0625@1|root,COG0625@2|Bacteria,1NF66@1224|Proteobacteria,2TVE4@28211|Alphaproteobacteria,3EYQN@335928|Xanthobacteraceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_01250	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_2,GST_N_3
DYD3_k127_5861217_1	1380394.JADL01000001_gene2119	7.355e-110	361.0	COG0606@1|root,COG0606@2|Bacteria,1MU4R@1224|Proteobacteria,2TQU6@28211|Alphaproteobacteria,2JP8C@204441|Rhodospirillales	204441|Rhodospirillales	O	ATPase with chaperone activity	-	-	-	ko:K07391	-	-	-	-	ko00000	-	-	-	ChlI,Mg_chelatase,Mg_chelatase_C
DYD3_k127_5870554_0	156889.Mmc1_1437	4.772e-115	389.0	COG1480@1|root,COG1480@2|Bacteria,1NCY5@1224|Proteobacteria	1224|Proteobacteria	S	SMART metal-dependent phosphohydrolase, HD	-	-	-	ko:K07037	-	-	-	-	ko00000	-	-	-	7TM-7TMR_HD,7TMR-HDED,HD
DYD3_k127_5870554_3	450851.PHZ_c3452	1.375e-39	155.0	COG0319@1|root,COG0319@2|Bacteria,1MZ67@1224|Proteobacteria,2UBXV@28211|Alphaproteobacteria,2KGPK@204458|Caulobacterales	204458|Caulobacterales	J	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA	ybeY	-	-	ko:K07042	-	-	-	-	ko00000,ko03009	-	-	-	UPF0054
DYD3_k127_5870554_1	402881.Plav_3620	6.003e-79	276.0	COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2TVFA@28211|Alphaproteobacteria,1JNC1@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Transporter associated domain	tlyC	-	-	ko:K06189	-	-	-	-	ko00000,ko02000	9.A.40.1.2	-	-	CBS,CorC_HlyC
DYD3_k127_5870554_2	1279038.KB907340_gene1499	3.117e-51	195.0	COG0815@1|root,COG0815@2|Bacteria,1MUBU@1224|Proteobacteria,2TQRC@28211|Alphaproteobacteria,2JQ0M@204441|Rhodospirillales	204441|Rhodospirillales	M	Transfers the fatty acyl group on membrane lipoproteins	lnt	-	-	ko:K03820	-	-	-	-	ko00000,ko01000	-	GT2	-	CN_hydrolase
DYD3_k127_5876467_25	1122603.ATVI01000008_gene2345	8.372e-85	301.0	COG2909@1|root,COG2909@2|Bacteria,1MVZZ@1224|Proteobacteria,1S1EW@1236|Gammaproteobacteria,1X4TZ@135614|Xanthomonadales	135614|Xanthomonadales	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
DYD3_k127_5876467_15	1122599.AUGR01000015_gene2750	4.291e-141	463.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,1RN8H@1236|Gammaproteobacteria,1XHP8@135619|Oceanospirillales	135619|Oceanospirillales	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_5876467_13	392500.Swoo_2320	2.738e-145	481.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RPY8@1236|Gammaproteobacteria,2Q8R5@267890|Shewanellaceae	1236|Gammaproteobacteria	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_5876467_16	1297865.APJD01000026_gene2556	2.897e-137	443.0	COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2TQYM@28211|Alphaproteobacteria,3K2XI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	N-terminal domain of oxidoreductase	-	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
DYD3_k127_5876467_19	1297865.APJD01000026_gene2547	4.872e-123	409.0	COG1024@1|root,COG1024@2|Bacteria,1R4IY@1224|Proteobacteria,2U2VD@28211|Alphaproteobacteria,3K2ZS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_5876467_7	450851.PHZ_c0388	7.727e-182	576.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,2KF2X@204458|Caulobacterales	204458|Caulobacterales	C	PFAM acyl-CoA dehydrogenase domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_5876467_8	745310.G432_06320	4.366e-175	552.0	COG3246@1|root,COG3246@2|Bacteria,1MZTP@1224|Proteobacteria,2TQKN@28211|Alphaproteobacteria,2K1JC@204457|Sphingomonadales	204457|Sphingomonadales	S	beta-keto acid cleavage enzyme	-	-	-	-	-	-	-	-	-	-	-	-	BKACE
DYD3_k127_5876467_2	1297865.APJD01000026_gene2548	2.734e-222	692.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JXB8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_5876467_20	158500.BV97_01889	5.493e-117	391.0	COG0427@1|root,COG0427@2|Bacteria,1MUGE@1224|Proteobacteria,2U67S@28211|Alphaproteobacteria,2KDDK@204457|Sphingomonadales	204457|Sphingomonadales	C	Acetyl-CoA hydrolase/transferase C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AcetylCoA_hyd_C
DYD3_k127_5876467_14	936455.KI421499_gene753	2.061e-144	461.0	COG0447@1|root,COG0447@2|Bacteria,1QTZ2@1224|Proteobacteria,2U0ZZ@28211|Alphaproteobacteria,3JWVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the enoyl-CoA hydratase isomerase family. MenB subfamily	menB	-	-	ko:K07536	ko00362,ko01120,ko01220,map00362,map01120,map01220	M00540	R05592	RC01429	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD3_k127_5876467_18	936455.KI421499_gene754	5.216e-124	401.0	COG1028@1|root,COG1028@2|Bacteria,1MU2T@1224|Proteobacteria,2TSDG@28211|Alphaproteobacteria,3JWEE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059,ko:K07535	ko00061,ko00333,ko00362,ko00780,ko01040,ko01100,ko01120,ko01130,ko01212,ko01220,map00061,map00333,map00362,map00780,map01040,map01100,map01120,map01130,map01212,map01220	M00083,M00540,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R05582,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117,RC00154	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_5876467_30	158500.BV97_01885	1.783e-44	167.0	COG1846@1|root,COG1846@2|Bacteria,1MZY5@1224|Proteobacteria,2UDHZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
DYD3_k127_5876467_11	1101189.AQUO01000002_gene171	2.343e-150	489.0	COG1545@1|root,COG3425@1|root,COG1545@2|Bacteria,COG3425@2|Bacteria,1QV6D@1224|Proteobacteria,2TTB1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	3-Oxoacyl- acyl-carrier-protein (ACP) synthase III	-	-	-	-	-	-	-	-	-	-	-	-	ACP_syn_III_C,DUF35_N,OB_aCoA_assoc
DYD3_k127_5876467_3	158500.BV97_01881	2.451e-209	655.0	COG0183@1|root,COG0183@2|Bacteria,1MU8C@1224|Proteobacteria,2TS6P@28211|Alphaproteobacteria,2K3RI@204457|Sphingomonadales	204457|Sphingomonadales	I	Thiolase, C-terminal domain	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_5876467_27	1297865.APJD01000026_gene2555	7.047e-76	268.0	COG2030@1|root,COG2030@2|Bacteria,1MW4N@1224|Proteobacteria,2TQQ2@28211|Alphaproteobacteria,3JXUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	N-terminal half of MaoC dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
DYD3_k127_5876467_21	158500.BV97_01879	8.507e-116	387.0	COG2301@1|root,COG2301@2|Bacteria,1MW0A@1224|Proteobacteria,2TTC0@28211|Alphaproteobacteria,2K2E1@204457|Sphingomonadales	28211|Alphaproteobacteria	G	Belongs to the HpcH HpaI aldolase family	-	-	4.1.3.34	ko:K01644	ko02020,map02020	-	R00362	RC00067,RC01118	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
DYD3_k127_5876467_1	936455.KI421499_gene750	1.745e-227	708.0	COG1960@1|root,COG1960@2|Bacteria,1MVAH@1224|Proteobacteria,2TR02@28211|Alphaproteobacteria,3JVUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_5876467_10	1101189.AQUO01000002_gene176	8.567e-152	486.0	COG1028@1|root,COG1028@2|Bacteria,1MXNQ@1224|Proteobacteria,2TS6G@28211|Alphaproteobacteria,2PVQ4@265|Paracoccus	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_5876467_34	1415779.JOMH01000001_gene2823	1.21e-14	84.0	2AMY1@1|root,31CV1@2|Bacteria,1Q8N3@1224|Proteobacteria,1SV07@1236|Gammaproteobacteria,1XBKT@135614|Xanthomonadales	135614|Xanthomonadales	S	Prokaryotic Cytochrome C oxidase subunit IV	-	-	-	-	-	-	-	-	-	-	-	-	COX4_pro
DYD3_k127_5876467_29	935866.JAER01000004_gene3795	2.329e-55	201.0	COG1845@1|root,COG1845@2|Bacteria,2IGQ5@201174|Actinobacteria	201174|Actinobacteria	C	Cytochrome c oxidase subunit III	-	-	-	-	-	-	-	-	-	-	-	-	COX3
DYD3_k127_5876467_22	1415779.JOMH01000001_gene2825	5.512e-113	369.0	2DMUZ@1|root,32TU9@2|Bacteria,1N9GU@1224|Proteobacteria,1T658@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5876467_33	338963.Pcar_0807	8.319e-16	91.0	2E41G@1|root,32YY3@2|Bacteria,1N7AU@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5876467_24	596154.Alide2_1849	7.883e-86	292.0	COG2030@1|root,COG2030@2|Bacteria,1MUR2@1224|Proteobacteria,2VHNF@28216|Betaproteobacteria,4ABFZ@80864|Comamonadaceae	28216|Betaproteobacteria	I	PFAM MaoC domain protein dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydrat_N,MaoC_dehydratas
DYD3_k127_5876467_9	1122603.ATVI01000007_gene1808	1.098e-168	546.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,1RMQ4@1236|Gammaproteobacteria,1X9KD@135614|Xanthomonadales	135614|Xanthomonadales	IQ	Activates fatty acids by binding to coenzyme A	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_5876467_23	158500.BV97_01874	7.09e-108	359.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TS5U@28211|Alphaproteobacteria,2K0V5@204457|Sphingomonadales	28211|Alphaproteobacteria	S	2-nitropropane dioxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
DYD3_k127_5876467_4	402881.Plav_1158	6.199e-196	629.0	COG3419@1|root,COG3419@2|Bacteria,1R6MQ@1224|Proteobacteria	1224|Proteobacteria	NU	Tfp pilus assembly protein tip-associated adhesin	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5876467_12	1122603.ATVI01000010_gene990	2.504e-148	481.0	2ERKW@1|root,33J6D@2|Bacteria,1R568@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5876467_31	1458357.BG58_27865	1.564e-36	145.0	2BZA1@1|root,33177@2|Bacteria,1NEBX@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5876467_6	1348657.M622_13510	2.625e-183	581.0	COG3173@1|root,COG3173@2|Bacteria,1MWAK@1224|Proteobacteria	1224|Proteobacteria	S	Aminoglycoside phosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	APH
DYD3_k127_5876467_5	158500.BV97_04064	1.244e-193	621.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2K1MV@204457|Sphingomonadales	204457|Sphingomonadales	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_5876467_26	929712.KI912613_gene785	3.594e-81	286.0	COG1024@1|root,COG1024@2|Bacteria,2I2PC@201174|Actinobacteria,4CQ29@84995|Rubrobacteria	84995|Rubrobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	5.3.3.18	ko:K15866	ko00360,ko01120,map00360,map01120	-	R09837,R09839	RC00004,RC00326,RC02689,RC03003	ko00000,ko00001,ko01000	-	-	-	ECH_1
DYD3_k127_5876467_17	936455.KI421499_gene742	1.914e-128	418.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,2U149@28211|Alphaproteobacteria,3K38X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_5876467_32	402881.Plav_2129	2.842e-25	107.0	COG1309@1|root,COG1309@2|Bacteria,1N3KN@1224|Proteobacteria,2UI3H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_5876467_28	1042326.AZNV01000074_gene2301	2.633e-57	209.0	2AAKD@1|root,30ZXW@2|Bacteria,1PMXB@1224|Proteobacteria,2V0HW@28211|Alphaproteobacteria,4BGP9@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5876467_0	1122604.JONR01000008_gene2280	4.901e-230	736.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X3PH@135614|Xanthomonadales	135614|Xanthomonadales	T	GGDEF domain	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GAF_2,GGDEF,HAMP,PAS,PAS_3,PAS_9
DYD3_k127_5891350_4	614083.AWQR01000047_gene3286	5.754e-06	49.0	COG0477@1|root,COG2814@2|Bacteria,1MW6T@1224|Proteobacteria,2VIXB@28216|Betaproteobacteria,4ACAS@80864|Comamonadaceae	28216|Betaproteobacteria	EGP	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_4
DYD3_k127_5891350_1	420324.KI912039_gene2235	4.76e-166	530.0	COG2070@1|root,COG2070@2|Bacteria,1MU2F@1224|Proteobacteria,2TUT7@28211|Alphaproteobacteria,1JSXA@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM 2-nitropropane dioxygenase NPD	MA20_36480	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
DYD3_k127_5891350_2	1121033.AUCF01000019_gene3724	1.983e-128	417.0	COG2607@1|root,COG2607@2|Bacteria,1MVMX@1224|Proteobacteria,2TTFE@28211|Alphaproteobacteria,2JPFK@204441|Rhodospirillales	204441|Rhodospirillales	S	ATPase (AAA	-	-	-	ko:K06923	-	-	-	-	ko00000	-	-	-	DUF815
DYD3_k127_5891350_3	1121033.AUCF01000019_gene3723	1.015e-32	131.0	COG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,2UBZ6@28211|Alphaproteobacteria,2JT97@204441|Rhodospirillales	204441|Rhodospirillales	U	Preprotein translocase subunit YajC	yajC	-	-	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	YajC
DYD3_k127_5891350_0	1122929.KB908224_gene3548	3.841e-278	879.0	COG0341@1|root,COG0342@1|root,COG0341@2|Bacteria,COG0342@2|Bacteria,1MV5U@1224|Proteobacteria,2TQYG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secD	-	-	ko:K03072,ko:K12257	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
DYD3_k127_5895516_3	1150626.PHAMO_230023	1.171e-30	125.0	COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2TU60@28211|Alphaproteobacteria,2JRS8@204441|Rhodospirillales	204441|Rhodospirillales	F	COG0518 GMP synthase - Glutamine amidotransferase domain	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
DYD3_k127_5895516_1	402881.Plav_2409	9.482e-72	252.0	COG0697@1|root,COG0697@2|Bacteria,1MVKG@1224|Proteobacteria,2U30N@28211|Alphaproteobacteria,1JQ41@119043|Rhodobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	ko:K15268	-	-	-	-	ko00000,ko02000	2.A.7.3.2	-	-	EamA
DYD3_k127_5895516_2	1449049.JONW01000003_gene2060	4.529e-71	261.0	COG3023@1|root,COG3023@2|Bacteria,1RDHU@1224|Proteobacteria,2TSW3@28211|Alphaproteobacteria,2KEZK@204458|Caulobacterales	204458|Caulobacterales	V	N-acetylmuramoyl-L-alanine amidase	-	-	3.5.1.28	ko:K01447	-	-	R04112	RC00064,RC00141	ko00000,ko01000	-	-	-	Amidase_2,PG_binding_1
DYD3_k127_5895516_4	224914.BMEI0568	5.772e-25	109.0	2ENFV@1|root,33G39@2|Bacteria,1NP5K@1224|Proteobacteria,2UJUH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5895516_0	1279038.KB907338_gene710	1.464e-163	528.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TQXH@28211|Alphaproteobacteria,2JPNS@204441|Rhodospirillales	204441|Rhodospirillales	Q	Multicopper oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
DYD3_k127_5907489_3	1150469.RSPPHO_00647	2.405e-19	104.0	COG0671@1|root,COG0671@2|Bacteria,1N7CW@1224|Proteobacteria,2TRDP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	phosphoesterase, PA-phosphatase related	lpxE	-	3.6.1.27	ko:K19302	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	PAP2
DYD3_k127_5907489_1	1121033.AUCF01000010_gene4549	3.707e-110	376.0	COG1807@1|root,COG1807@2|Bacteria,1NMIZ@1224|Proteobacteria,2TRS4@28211|Alphaproteobacteria,2JQTC@204441|Rhodospirillales	204441|Rhodospirillales	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	PMT,PMT_2
DYD3_k127_5907489_2	1380394.JADL01000001_gene3056	7.463e-82	279.0	COG0463@1|root,COG0463@2|Bacteria,1MW2G@1224|Proteobacteria,2TTR9@28211|Alphaproteobacteria,2JQI8@204441|Rhodospirillales	204441|Rhodospirillales	M	Glycosyl transferase family 2	-	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2
DYD3_k127_5907489_0	1123355.JHYO01000006_gene2209	3.718e-132	435.0	COG2239@1|root,COG2239@2|Bacteria,1MW24@1224|Proteobacteria,2TRWK@28211|Alphaproteobacteria,36XM2@31993|Methylocystaceae	28211|Alphaproteobacteria	P	MgtE intracellular N domain	mgtE	-	-	ko:K06213	-	-	-	-	ko00000,ko02000	1.A.26.1	-	-	CBS,MgtE,MgtE_N
DYD3_k127_5910203_1	316057.RPD_4017	1.095e-116	397.0	COG2114@1|root,COG4252@1|root,COG2114@2|Bacteria,COG4252@2|Bacteria,1MV1V@1224|Proteobacteria,2TU52@28211|Alphaproteobacteria,3JSN7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	CHASE2	-	-	4.6.1.1,4.6.1.2	ko:K01768,ko:K01769	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	CHASE2,Guanylate_cyc
DYD3_k127_5910203_2	264198.Reut_A3375	2.975e-46	181.0	COG0789@1|root,COG0789@2|Bacteria,1RGX6@1224|Proteobacteria,2VSD1@28216|Betaproteobacteria,1K80X@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Transcriptional regulator	cueR	-	-	ko:K19591,ko:K19592	-	M00768,M00769	-	-	ko00000,ko00002,ko01504,ko03000	-	-	-	MerR,MerR-DNA-bind
DYD3_k127_5910203_0	987059.RBXJA2T_18733	1.279e-150	491.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2VH8J@28216|Betaproteobacteria,1KJVH@119065|unclassified Burkholderiales	28216|Betaproteobacteria	P	heavy metal translocating P-type ATPase	-	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,HMA,Hydrolase
DYD3_k127_5951970_11	414684.RC1_3671	2.87e-15	76.0	COG1278@1|root,COG1278@2|Bacteria,1RAUE@1224|Proteobacteria,2U0S7@28211|Alphaproteobacteria,2JZRC@204441|Rhodospirillales	204441|Rhodospirillales	K	Ribonuclease B OB domain	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_5951970_12	1121106.JQKB01000001_gene3307	1.774e-13	79.0	COG5126@1|root,COG5126@2|Bacteria,1NH5D@1224|Proteobacteria,2UJHN@28211|Alphaproteobacteria,2JUJZ@204441|Rhodospirillales	204441|Rhodospirillales	DTZ	EF-hand domain pair	-	-	-	-	-	-	-	-	-	-	-	-	EF-hand_5
DYD3_k127_5951970_8	391615.ABSJ01000029_gene1943	6.402e-39	148.0	2EABP@1|root,334FU@2|Bacteria,1P0TZ@1224|Proteobacteria,1SRNJ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF2834)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2834
DYD3_k127_5951970_0	1297865.APJD01000006_gene4340	4.912e-177	569.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JWT5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	-	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N,NAD_binding_8
DYD3_k127_5951970_3	371731.Rsw2DRAFT_2993	1.397e-139	481.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,1FAQZ@1060|Rhodobacter	28211|Alphaproteobacteria	Q	COG2931 RTX toxins and related Ca2 -binding proteins	-	-	3.4.24.40	ko:K01406	ko01503,map01503	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	HemolysinCabind,PPC,Peptidase_M10_C,Peptidase_M66,Reprolysin_4
DYD3_k127_5951970_6	876044.IMCC3088_581	6.21e-105	353.0	COG0115@1|root,COG0115@2|Bacteria,1MVB0@1224|Proteobacteria,1RQZ9@1236|Gammaproteobacteria	1236|Gammaproteobacteria	EH	aminotransferase	-	-	2.6.1.42	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R10991	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_4
DYD3_k127_5951970_7	1122137.AQXF01000001_gene3130	2.148e-86	293.0	2C3PP@1|root,2Z954@2|Bacteria,1MXGR@1224|Proteobacteria,2TS01@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Branched-chain amino acid aminotransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5951970_1	1411123.JQNH01000001_gene2681	2.193e-159	510.0	COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,2TR2Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	ABC transporter	hndI	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_5951970_5	1192868.CAIU01000013_gene1748	2.806e-127	413.0	COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,2TQSY@28211|Alphaproteobacteria,43HVA@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	Transport permease protein	yadH	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD3_k127_5951970_10	679926.Mpet_0183	1.125e-18	91.0	COG0784@1|root,arCOG06537@2157|Archaea,2XWYJ@28890|Euryarchaeota,2NAS2@224756|Methanomicrobia	224756|Methanomicrobia	T	PFAM response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	PAS,PAS_4,PAS_9,Response_reg
DYD3_k127_5951970_2	1110502.TMO_0864	2.218e-157	502.0	COG3491@1|root,COG3491@2|Bacteria,1MUNT@1224|Proteobacteria,2TU3Y@28211|Alphaproteobacteria,2JR3E@204441|Rhodospirillales	204441|Rhodospirillales	C	Belongs to the iron ascorbate-dependent oxidoreductase family	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy,DIOX_N
DYD3_k127_5951970_4	765698.Mesci_2883	6.728e-136	446.0	COG1744@1|root,COG1744@2|Bacteria,1MWTM@1224|Proteobacteria,2TSZU@28211|Alphaproteobacteria,43HD8@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	ABC-type transport system, periplasmic component surface lipoprotein	-	-	-	-	-	-	-	-	-	-	-	-	Bmp
DYD3_k127_5961954_4	266779.Meso_2077	1.139e-38	150.0	COG3794@1|root,COG3794@2|Bacteria,1MZWU@1224|Proteobacteria,2UC7P@28211|Alphaproteobacteria,43JYF@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	C	pseudoazurin	-	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	-	-	-	-	-	-	-	-	-	Copper-bind
DYD3_k127_5961954_1	570967.JMLV01000007_gene948	5.646e-162	519.0	COG2132@1|root,COG2132@2|Bacteria,1MV74@1224|Proteobacteria,2U1BK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Nitrite reductase	-	-	1.7.2.1	ko:K00368	ko00910,ko01120,map00910,map01120	M00529	R00783,R00785	RC00086	ko00000,ko00001,ko00002,ko01000	-	-	-	Copper-bind,Cu-oxidase_2,Cu-oxidase_3,Cytochrom_C
DYD3_k127_5961954_2	1380391.JIAS01000012_gene4343	1.915e-54	205.0	2A9UF@1|root,30Z2A@2|Bacteria,1NB3B@1224|Proteobacteria,2UITS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function	-	-	-	-	-	-	-	-	-	-	-	-	DUF1835,DUF3658
DYD3_k127_5961954_0	391600.ABRU01000060_gene1521	4.481e-198	632.0	COG2271@1|root,COG2271@2|Bacteria,1QUF4@1224|Proteobacteria,2TW2A@28211|Alphaproteobacteria,2KGKY@204458|Caulobacterales	204458|Caulobacterales	G	major facilitator superfamily	-	-	-	ko:K08218	ko01501,map01501	M00628	-	-	ko00000,ko00001,ko00002,ko02000	2.A.1.25	-	-	Acatn,MFS_1
DYD3_k127_5961954_3	1123366.TH3_00980	6.64e-39	150.0	COG3176@1|root,COG3176@2|Bacteria,1MWIM@1224|Proteobacteria,2TUVA@28211|Alphaproteobacteria,2JPVT@204441|Rhodospirillales	204441|Rhodospirillales	S	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_5
DYD3_k127_5964568_0	414684.RC1_1034	1.387e-172	549.0	COG0172@1|root,COG0172@2|Bacteria,1MUJF@1224|Proteobacteria,2TR4T@28211|Alphaproteobacteria,2JQAP@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)	serS	-	6.1.1.11	ko:K01875	ko00970,map00970	M00359,M00360	R03662,R08218	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Seryl_tRNA_N,tRNA-synt_2b
DYD3_k127_5964568_3	1282876.BAOK01000001_gene2037	2.711e-94	316.0	COG0496@1|root,COG0496@2|Bacteria,1MVHE@1224|Proteobacteria,2TQXZ@28211|Alphaproteobacteria,4BQ5E@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates	surE	-	3.1.3.5	ko:K03787	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	-	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000	-	-	-	SurE
DYD3_k127_5964568_4	402881.Plav_3032	4.676e-76	260.0	COG2518@1|root,COG2518@2|Bacteria,1MXQC@1224|Proteobacteria,2TVCY@28211|Alphaproteobacteria,1JNWY@119043|Rhodobiaceae	28211|Alphaproteobacteria	J	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	pcm	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	PCMT
DYD3_k127_5964568_5	1279038.KB907337_gene425	1.487e-69	252.0	COG1388@1|root,COG4942@1|root,COG1388@2|Bacteria,COG4942@2|Bacteria,1RD24@1224|Proteobacteria,2TUNI@28211|Alphaproteobacteria,2JRUF@204441|Rhodospirillales	204441|Rhodospirillales	D	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	LysM,Peptidase_M23
DYD3_k127_5964568_2	1123255.JHYS01000002_gene2491	4.983e-105	348.0	COG0583@1|root,COG0583@2|Bacteria,1N8HZ@1224|Proteobacteria,2VP2C@28216|Betaproteobacteria,4AD1G@80864|Comamonadaceae	28216|Betaproteobacteria	K	LysR substrate-binding	gltR_2	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_5964568_1	296591.Bpro_1488	8.228e-119	391.0	COG0477@1|root,COG2814@2|Bacteria,1MW6T@1224|Proteobacteria,2VIXB@28216|Betaproteobacteria,4ACAS@80864|Comamonadaceae	28216|Betaproteobacteria	EGP	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_4
DYD3_k127_5984697_3	414684.RC1_1028	2.886e-49	183.0	COG1994@1|root,COG1994@2|Bacteria,1NSFF@1224|Proteobacteria,2TRIF@28211|Alphaproteobacteria,2JRZ0@204441|Rhodospirillales	204441|Rhodospirillales	S	COG1994 Zn-dependent proteases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M50
DYD3_k127_5984697_1	991905.SL003B_2191	2.385e-109	363.0	COG1472@1|root,COG1472@2|Bacteria,1MVAJ@1224|Proteobacteria,2TRJK@28211|Alphaproteobacteria,4BQ16@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	G	PFAM Glycosyl hydrolase family 3 N terminal domain	nagZ	-	3.2.1.21,3.2.1.52	ko:K01207,ko:K05349	ko00460,ko00500,ko00520,ko00531,ko00940,ko01100,ko01110,ko01501,map00460,map00500,map00520,map00531,map00940,map01100,map01110,map01501	M00628	R00022,R00026,R02558,R02887,R02985,R03527,R04949,R04998,R05963,R07809,R07810,R10035,R10039,R10040,R10831	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko00002,ko01000	-	GH3	-	Glyco_hydro_3
DYD3_k127_5984697_4	1121033.AUCF01000001_gene2579	6.696e-20	102.0	COG3266@1|root,COG3266@2|Bacteria,1R2G4@1224|Proteobacteria,2TZJE@28211|Alphaproteobacteria,2JZ1Z@204441|Rhodospirillales	204441|Rhodospirillales	S	Sporulation related domain	-	-	-	-	-	-	-	-	-	-	-	-	SPOR
DYD3_k127_5984697_0	1380394.JADL01000005_gene5658	5e-243	764.0	COG0018@1|root,COG0018@2|Bacteria,1MU4J@1224|Proteobacteria,2TS3Y@28211|Alphaproteobacteria,2JQHX@204441|Rhodospirillales	204441|Rhodospirillales	J	Arginyl-tRNA synthetase	argS	-	6.1.1.19	ko:K01887	ko00970,map00970	M00359,M00360	R03646	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d
DYD3_k127_5984697_2	1279038.KB907337_gene439	9.085e-91	304.0	COG0232@1|root,COG0232@2|Bacteria,1MVQ2@1224|Proteobacteria,2TRCD@28211|Alphaproteobacteria,2JQG9@204441|Rhodospirillales	204441|Rhodospirillales	F	deoxyguanosinetriphosphate triphosphohydrolase-like protein	-	-	3.1.5.1	ko:K01129	ko00230,map00230	-	R01856	RC00017	ko00000,ko00001,ko01000	-	-	-	HD,HD_assoc
DYD3_k127_5989122_6	1187851.A33M_3433	9.717e-15	77.0	COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,2TRVJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Transport of potassium into the cell	kup	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662	-	ko:K03549	-	-	-	-	ko00000,ko02000	2.A.72	-	-	K_trans
DYD3_k127_5989122_0	78245.Xaut_2599	2.984e-260	815.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TR3X@28211|Alphaproteobacteria,3EYY0@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	ABC transporter C-terminal domain	uup	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363	-	ko:K15738	-	-	-	-	ko00000,ko02000	3.A.1.120.6	-	-	ABC_tran,ABC_tran_CTD
DYD3_k127_5989122_1	1287276.X752_26725	2.466e-167	535.0	COG1167@1|root,COG1167@2|Bacteria,1MV6F@1224|Proteobacteria,2TR7I@28211|Alphaproteobacteria,43IDC@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EK	Transcriptional regulator	lysN	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2
DYD3_k127_5989122_5	338963.Pcar_0807	3.508e-15	90.0	2E41G@1|root,32YY3@2|Bacteria,1N7AU@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989122_4	710686.Mycsm_00629	2.894e-15	85.0	COG1309@1|root,COG1309@2|Bacteria,2IGNJ@201174|Actinobacteria,238R0@1762|Mycobacteriaceae	201174|Actinobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K09017	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_3,TetR_N
DYD3_k127_5989122_7	1206735.BAGG01000105_gene4525	6.365e-12	77.0	COG4399@1|root,COG4399@2|Bacteria,2GMW6@201174|Actinobacteria,4FXB4@85025|Nocardiaceae	201174|Actinobacteria	S	Belongs to the UPF0754 family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989122_2	83406.HDN1F_33540	3.04e-152	491.0	COG4399@1|root,COG4399@2|Bacteria,1R42C@1224|Proteobacteria,1RPWG@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5989122_3	1054213.HMPREF9946_05148	4.392e-53	191.0	COG2259@1|root,COG2259@2|Bacteria,1N0DQ@1224|Proteobacteria,2UCKC@28211|Alphaproteobacteria,2JXC5@204441|Rhodospirillales	204441|Rhodospirillales	S	DoxX	-	-	-	ko:K18305	-	M00644	-	-	ko00000,ko00002,ko02000	-	-	-	DoxX
DYD3_k127_5991198_3	1380394.JADL01000016_gene402	6.928e-91	305.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2TSB6@28211|Alphaproteobacteria,2JPEQ@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K07799	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	8.A.1	-	-	Biotin_lipoyl_2,HlyD_D23
DYD3_k127_5991198_1	1370122.JHXQ01000007_gene3145	0.0	1225.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,4B8T5@82115|Rhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	mdtB	-	-	ko:K07788	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_5991198_2	1370122.JHXQ01000007_gene3144	0.0	1094.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,4BBMI@82115|Rhizobiaceae	28211|Alphaproteobacteria	V	AcrB/AcrD/AcrF family	mdtC	-	-	ko:K07789	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
DYD3_k127_5991198_4	1161401.ASJA01000001_gene295	2.995e-86	312.0	COG0477@1|root,COG2814@2|Bacteria,1MVSH@1224|Proteobacteria,2TUEW@28211|Alphaproteobacteria,43WI7@69657|Hyphomonadaceae	28211|Alphaproteobacteria	EGP	COG0477 Permeases of the major facilitator superfamily	tetA	-	-	ko:K08151	-	M00668	-	-	ko00000,ko00002,ko01504,ko02000	2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75	-	-	MFS_1,Sugar_tr
DYD3_k127_5991198_5	322710.Avin_05100	8.016e-61	218.0	COG1192@1|root,COG1192@2|Bacteria,1NJKZ@1224|Proteobacteria,1RWI5@1236|Gammaproteobacteria	1236|Gammaproteobacteria	D	cellulose synthase operon protein YhjQ	yhjQ	-	-	-	-	-	-	-	-	-	-	-	CBP_BcsQ
DYD3_k127_5991198_0	509190.Cseg_3479	0.0	1334.0	COG1215@1|root,COG1215@2|Bacteria,1MWF8@1224|Proteobacteria,2TS1X@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Cellulose synthase	-	-	2.4.1.12	ko:K00694,ko:K20541	ko00500,ko01100,ko02026,map00500,map01100,map02026	-	R02889	RC00005	ko00000,ko00001,ko01000,ko01003,ko02000	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6	GT2	-	BcsB,Cellulose_synt,Glycos_transf_2,PilZ
DYD3_k127_5991198_6	745411.B3C1_02330	1.204e-21	106.0	COG0457@1|root,COG3071@1|root,COG0457@2|Bacteria,COG3071@2|Bacteria,1MVB8@1224|Proteobacteria,1RPSN@1236|Gammaproteobacteria,1JB7C@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	H	Cellulose synthase operon protein C C-terminus (BCSC_C)	bcsC	-	-	ko:K20543	-	-	-	-	ko00000,ko02000	1.B.55.3	-	-	BCSC_C,TPR_16,TPR_19,TPR_8
DYD3_k127_5991580_3	438753.AZC_2145	5.588e-67	234.0	28IK6@1|root,2Z8KY@2|Bacteria,1R6W0@1224|Proteobacteria,2UPD2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5991580_4	42256.RradSPS_1092	1.014e-32	132.0	COG0454@1|root,COG0456@2|Bacteria,2IJC7@201174|Actinobacteria	201174|Actinobacteria	K	Acetyltransferase (GNAT) family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_5991580_6	1408418.JNJH01000055_gene1533	1.027e-26	111.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,2JTV9@204441|Rhodospirillales	204441|Rhodospirillales	K	Cold shock	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_5991580_8	1282361.ABAC402_13305	0.0001773	53.0	COG0666@1|root,COG0666@2|Bacteria,1R1M3@1224|Proteobacteria	1224|Proteobacteria	S	response to abiotic stimulus	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_5991580_2	1124983.PFLCHA0_c52040	1.198e-175	567.0	COG0443@1|root,COG0443@2|Bacteria,1MUR1@1224|Proteobacteria,1RR7P@1236|Gammaproteobacteria,1YPVC@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	O	Belongs to the heat shock protein 70 family	hscC	-	-	ko:K04045	-	-	-	-	ko00000,ko03110	1.A.33	-	-	HSP70,MreB_Mbl
DYD3_k127_5991580_0	1121033.AUCF01000001_gene2128	7.406e-245	762.0	COG0064@1|root,COG0064@2|Bacteria,1MUKG@1224|Proteobacteria,2TRHX@28211|Alphaproteobacteria,2JPFI@204441|Rhodospirillales	204441|Rhodospirillales	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatB	-	6.3.5.6,6.3.5.7	ko:K02434	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	GatB_N,GatB_Yqey
DYD3_k127_5991580_1	1333998.M2A_0683	5.05e-231	724.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TRFY@28211|Alphaproteobacteria,4BPTP@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	gatA	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
DYD3_k127_5991580_5	349102.Rsph17025_2227	6.944e-31	124.0	COG0721@1|root,COG0721@2|Bacteria,1MZQP@1224|Proteobacteria,2UBSZ@28211|Alphaproteobacteria,1FC2Y@1060|Rhodobacter	28211|Alphaproteobacteria	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatC	-	6.3.5.6,6.3.5.7	ko:K02435	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Glu-tRNAGln
DYD3_k127_5991580_7	1298858.AUEL01000019_gene3175	6.914e-26	108.0	2EH3E@1|root,33AVE@2|Bacteria,1Q8HG@1224|Proteobacteria,2UW8E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6010330_0	1430440.MGMSRv2_2841	1.943e-141	454.0	COG0115@1|root,COG0115@2|Bacteria,1MVB0@1224|Proteobacteria,2TR1H@28211|Alphaproteobacteria,2JPFS@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family	ilvE	-	2.6.1.42	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R10991	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_4
DYD3_k127_6010330_3	1430440.MGMSRv2_2840	5.022e-62	217.0	COG1846@1|root,COG1846@2|Bacteria,1RIX7@1224|Proteobacteria,2U94M@28211|Alphaproteobacteria,2JS8Q@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional	petP	-	-	-	-	-	-	-	-	-	-	-	MarR_2
DYD3_k127_6010330_2	351016.RAZWK3B_03595	1.486e-80	275.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TSQF@28211|Alphaproteobacteria,2P2CF@2433|Roseobacter	28211|Alphaproteobacteria	K	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	petR	-	-	ko:K07659	ko02020,ko02026,map02020,map02026	M00445,M00742,M00743	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_6010330_1	1282876.BAOK01000001_gene1231	5.425e-105	365.0	COG0642@1|root,COG2205@2|Bacteria,1MUAK@1224|Proteobacteria,2TQRE@28211|Alphaproteobacteria,4BPHP@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	T	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	envZ	-	2.7.13.3	ko:K07638	ko02020,ko02026,map02020,map02026	M00445,M00742,M00743	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA
DYD3_k127_6029099_1	883078.HMPREF9695_01356	1.23e-60	213.0	COG2259@1|root,COG2259@2|Bacteria,1N1VA@1224|Proteobacteria,2TVZ9@28211|Alphaproteobacteria,3JRVF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD3_k127_6029099_0	1380355.JNIJ01000038_gene4859	1.137e-215	687.0	COG2114@1|root,COG2114@2|Bacteria,1RBTC@1224|Proteobacteria,2TV5V@28211|Alphaproteobacteria,3JQSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc,dCache_1
DYD3_k127_6048156_2	1144312.PMI09_03168	1.276e-102	340.0	COG2188@1|root,COG2188@2|Bacteria,1MVFM@1224|Proteobacteria,2U7HX@28211|Alphaproteobacteria,4B8XN@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	histidine utilization repressor	hutC	-	-	ko:K05836	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
DYD3_k127_6048156_1	196367.JNFG01000019_gene4439	3.444e-106	352.0	COG0834@1|root,COG0834@2|Bacteria,1NT2J@1224|Proteobacteria,2W9VW@28216|Betaproteobacteria,1K0S9@119060|Burkholderiaceae	28216|Betaproteobacteria	ET	PFAM extracellular solute-binding protein, family 3	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_3
DYD3_k127_6048156_3	1122963.AUHB01000006_gene2385	5.109e-98	326.0	COG4215@1|root,COG4215@2|Bacteria,1MY2N@1224|Proteobacteria,2U1NX@28211|Alphaproteobacteria,37037@31993|Methylocystaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	occQ	-	-	ko:K10020	ko02010,map02010	M00231	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.5,3.A.1.3.6	-	-	BPD_transp_1
DYD3_k127_6048156_4	1122963.AUHB01000006_gene2384	1.382e-96	321.0	COG4160@1|root,COG4160@2|Bacteria,1QV6B@1224|Proteobacteria,2U1EA@28211|Alphaproteobacteria,36YFD@31993|Methylocystaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K10019	ko02010,map02010	M00231	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.5,3.A.1.3.6	-	-	BPD_transp_1
DYD3_k127_6048156_0	1122963.AUHB01000006_gene2383	1.306e-125	406.0	COG4598@1|root,COG4598@2|Bacteria,1QTS2@1224|Proteobacteria,2TVZC@28211|Alphaproteobacteria,36ZWD@31993|Methylocystaceae	28211|Alphaproteobacteria	E	AAA domain, putative AbiEii toxin, Type IV TA system	-	-	-	ko:K10021	ko02010,map02010	M00231	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3.5,3.A.1.3.6	-	-	ABC_tran
DYD3_k127_6048156_5	1500897.JQNA01000002_gene3215	5.73e-63	225.0	COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,2W1KB@28216|Betaproteobacteria,1K030@119060|Burkholderiaceae	28216|Betaproteobacteria	E	PFAM phenylalanine histidine ammonia-lyase	-	-	4.3.1.3	ko:K01745	ko00340,ko01100,map00340,map01100	M00045	R01168	RC00361	ko00000,ko00001,ko00002,ko01000	-	-	-	Lyase_aromatic
DYD3_k127_6110582_3	748247.AZKH_p0518	1.015e-86	297.0	COG4447@1|root,COG4447@2|Bacteria,1Q7AA@1224|Proteobacteria,2VMMP@28216|Betaproteobacteria,2KXW0@206389|Rhodocyclales	206389|Rhodocyclales	S	Photosynthesis system II assembly factor YCF48	-	-	-	-	-	-	-	-	-	-	-	-	PSII_BNR
DYD3_k127_6110582_0	391038.Bphy_4865	0.0	1101.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,2VJ61@28216|Betaproteobacteria,1K1UZ@119060|Burkholderiaceae	28216|Betaproteobacteria	S	MMPL family	-	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
DYD3_k127_6110582_1	1218084.BBJK01000015_gene1568	4.401e-158	524.0	COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,2VKX7@28216|Betaproteobacteria,1K5BB@119060|Burkholderiaceae	28216|Betaproteobacteria	M	Protein of unknown function (DUF1302)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1302
DYD3_k127_6110582_2	391038.Bphy_4870	4.745e-148	483.0	28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,2VJJ3@28216|Betaproteobacteria,1K50G@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Protein of unknown function (DUF1329)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_6150110_6	1411123.JQNH01000001_gene1495	2.422e-49	176.0	COG0191@1|root,COG0191@2|Bacteria,1MURX@1224|Proteobacteria,2TSAD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Fructose-bisphosphate aldolase, class II, Calvin cycle subtype	cbbA	-	4.1.2.13	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167,M00344,M00345	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	F_bP_aldolase
DYD3_k127_6150110_2	794846.AJQU01000062_gene2667	7.306e-144	495.0	COG0126@1|root,COG0126@2|Bacteria,1MUNU@1224|Proteobacteria,2TSKQ@28211|Alphaproteobacteria,4B8HH@82115|Rhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the phosphoglycerate kinase family	pgk	GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.2.3	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01512	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
DYD3_k127_6150110_0	1038858.AXBA01000004_gene148	1.228e-284	896.0	COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,2TQUX@28211|Alphaproteobacteria,3EYCU@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	Transketolase, thiamine diphosphate binding domain	cbbT	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C,Transketolase_N
DYD3_k127_6150110_1	1411123.JQNH01000001_gene1492	5.226e-153	486.0	COG3954@1|root,COG3954@2|Bacteria,1MWN9@1224|Proteobacteria,2TSV4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Phosphoribulokinase	cbbP	-	2.7.1.19	ko:K00855	ko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200	M00165,M00166	R01523	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PRK
DYD3_k127_6150110_5	639283.Snov_0424	1.543e-111	372.0	COG0158@1|root,COG0158@2|Bacteria,1MW0E@1224|Proteobacteria,2TSKS@28211|Alphaproteobacteria,3EYPV@335928|Xanthobacteraceae	28211|Alphaproteobacteria	G	carbohydrate phosphatase activity	fbp	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576	3.1.3.11	ko:K03841	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910	M00003,M00165,M00167,M00344	R00762,R04780	RC00017	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	FBPase
DYD3_k127_6150110_4	1411123.JQNH01000001_gene1490	1.476e-117	385.0	COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,2TQS4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	MA20_07165	-	-	ko:K21703	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_6150110_3	1379701.JPJC01000041_gene292	1.3e-126	419.0	COG3203@1|root,COG3203@2|Bacteria,1P7S0@1224|Proteobacteria,2U33N@28211|Alphaproteobacteria,2K1XC@204457|Sphingomonadales	204457|Sphingomonadales	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	-	-	-	-	-	-	-	-	-	-	-	-	Porin_4
DYD3_k127_618133_6	744985.HIMB59_00009330	2.01e-05	55.0	COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TSJQ@28211|Alphaproteobacteria,4BQP2@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	Branched-chain amino acid transport system / permease component	livM	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2,DUF3382
DYD3_k127_618133_4	1121861.KB899921_gene2995	6.552e-72	251.0	COG0815@1|root,COG0815@2|Bacteria,1MUBU@1224|Proteobacteria,2TQRC@28211|Alphaproteobacteria,2JQ0M@204441|Rhodospirillales	204441|Rhodospirillales	M	Transfers the fatty acyl group on membrane lipoproteins	lnt	-	-	ko:K03820	-	-	-	-	ko00000,ko01000	-	GT2	-	CN_hydrolase
DYD3_k127_618133_5	1430440.MGMSRv2_3129	3.766e-36	142.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,2JSZQ@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_618133_0	1150469.RSPPHO_00187	5.825e-200	629.0	COG0192@1|root,COG0192@2|Bacteria,1MUFQ@1224|Proteobacteria,2TR4P@28211|Alphaproteobacteria,2JPUD@204441|Rhodospirillales	204441|Rhodospirillales	H	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	metK	-	2.5.1.6	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	M00034,M00035,M00368,M00609	R00177,R04771	RC00021,RC01211	ko00000,ko00001,ko00002,ko01000	-	-	-	S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N
DYD3_k127_618133_3	414684.RC1_2971	9.38e-83	281.0	COG0220@1|root,COG0220@2|Bacteria,1MUWJ@1224|Proteobacteria,2TUU9@28211|Alphaproteobacteria,2JRSC@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA	trmB	-	2.1.1.33	ko:K03439	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Methyltransf_4
DYD3_k127_618133_2	392499.Swit_4010	1.05e-83	287.0	COG0500@1|root,COG0500@2|Bacteria	2|Bacteria	Q	methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	MethyTransf_Reg,Methyltransf_11,Methyltransf_23,Methyltransf_25
DYD3_k127_618133_1	1125973.JNLC01000010_gene1981	2.304e-122	411.0	COG3284@1|root,COG3284@2|Bacteria,1NRG5@1224|Proteobacteria,2TR0H@28211|Alphaproteobacteria,3JU52@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KQ	Sigma-54 interaction domain	acxR	-	-	ko:K21405	-	-	-	-	ko00000,ko03000	-	-	-	GAF,HTH_8,Sigma54_activ_2,Sigma54_activat
DYD3_k127_6188955_2	1110502.TMO_0439	4.591e-63	224.0	COG3047@1|root,COG3047@2|Bacteria,1NUZJ@1224|Proteobacteria,2TRGI@28211|Alphaproteobacteria,2JZRZ@204441|Rhodospirillales	204441|Rhodospirillales	M	OmpW family	-	-	-	ko:K07275	-	-	-	-	ko00000	-	-	-	OmpW
DYD3_k127_6188955_0	1411123.JQNH01000001_gene2529	1.517e-160	512.0	COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,2TR6E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	gapA	-	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
DYD3_k127_6188955_3	1041142.ATTP01000004_gene4402	1.053e-49	184.0	COG2370@1|root,COG2370@2|Bacteria,1N08F@1224|Proteobacteria,2UA0Y@28211|Alphaproteobacteria,4B7VB@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	HupE / UreJ protein	hupE	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03192	-	-	-	-	ko00000	-	-	-	HupE_UreJ
DYD3_k127_6188955_1	319003.Bra1253DRAFT_02576	5.305e-121	396.0	COG0378@1|root,COG0378@2|Bacteria,1MVBD@1224|Proteobacteria,2TUAA@28211|Alphaproteobacteria,3JREC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KO	CobW/HypB/UreG, nucleotide-binding domain	hypB	-	-	ko:K04652	-	-	-	-	ko00000,ko03110	-	-	-	cobW
DYD3_k127_6188955_4	1230476.C207_04834	8.597e-42	155.0	COG0375@1|root,COG0375@2|Bacteria,1MZJH@1224|Proteobacteria,2UBR0@28211|Alphaproteobacteria,3JZHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Probably plays a role in a hydrogenase nickel cofactor insertion step	-	-	-	ko:K04651	-	-	-	-	ko00000,ko03110	-	-	-	HypA
DYD3_k127_6212223_1	414684.RC1_2074	2.102e-165	528.0	COG3288@1|root,COG3288@2|Bacteria,1MVXU@1224|Proteobacteria,2TSZN@28211|Alphaproteobacteria,2JPDV@204441|Rhodospirillales	204441|Rhodospirillales	C	transhydrogenase subunit alpha	pntAA	GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
DYD3_k127_6212223_2	1535287.JP74_15155	8.726e-38	144.0	COG3288@1|root,COG3288@2|Bacteria,1MZ3E@1224|Proteobacteria,2UBXS@28211|Alphaproteobacteria,3N764@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	C	4TM region of pyridine nucleotide transhydrogenase, mitoch	pntAB	GO:0008150,GO:0008152,GO:0055114	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	PNTB_4TM
DYD3_k127_6212223_0	1292034.OR37_00957	8.989e-195	615.0	COG1282@1|root,COG1282@2|Bacteria,1MUP4@1224|Proteobacteria,2TQN1@28211|Alphaproteobacteria,2KFJ5@204458|Caulobacterales	204458|Caulobacterales	C	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	-	-	1.6.1.2	ko:K00325	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	PNTB
DYD3_k127_623024_2	316058.RPB_2282	2.47e-82	284.0	29NNR@1|root,309KP@2|Bacteria,1R91H@1224|Proteobacteria,2TUSZ@28211|Alphaproteobacteria,3JRRV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_623024_0	1038859.AXAU01000001_gene2978	0.0	1055.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,3JSW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	iorB	-	1.3.99.16	ko:K07303	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C2
DYD3_k127_623024_3	1038859.AXAU01000001_gene2977	3.218e-77	260.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U6Z6@28211|Alphaproteobacteria,3JUPH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	iorA	-	1.3.99.16	ko:K07302	-	-	-	-	ko00000,ko01000	-	-	-	Fer2,Fer2_2
DYD3_k127_623024_4	1207063.P24_01185	2.622e-48	180.0	COG1309@1|root,COG1309@2|Bacteria,1R83W@1224|Proteobacteria,2U3V5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator, TetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_623024_1	398527.Bphyt_0185	8.628e-176	573.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2VH3V@28216|Betaproteobacteria,1K0RA@119060|Burkholderiaceae	28216|Betaproteobacteria	T	GGDEF domain containing protein	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_9
DYD3_k127_623024_5	1411123.JQNH01000001_gene2486	2.49e-11	72.0	2CFTD@1|root,32RKN@2|Bacteria,1N11N@1224|Proteobacteria,2UBTR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2937)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2937
DYD3_k127_6238837_3	335659.S23_30720	2.644e-16	89.0	2EHU7@1|root,33BJV@2|Bacteria,1N3NY@1224|Proteobacteria,2UEBI@28211|Alphaproteobacteria,3K0J1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6238837_2	1141663.OOC_00815	2.524e-19	93.0	COG0697@1|root,COG0697@2|Bacteria,1N2BC@1224|Proteobacteria,1SAEH@1236|Gammaproteobacteria,3ZAH7@586|Providencia	1236|Gammaproteobacteria	EG	Protein of unknown function (DUF2569)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2569
DYD3_k127_6238837_1	1411123.JQNH01000001_gene194	4.169e-59	214.0	COG1073@1|root,COG1073@2|Bacteria,1RIWI@1224|Proteobacteria,2UAKC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	COG1073 Hydrolases of the alpha beta superfamily	-	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	Abhydrolase_1,Hydrolase_4,Peptidase_S9
DYD3_k127_6238837_0	323097.Nham_2538	3.638e-133	437.0	COG1132@1|root,COG1132@2|Bacteria,1MXC2@1224|Proteobacteria,2TTB6@28211|Alphaproteobacteria,3JX21@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_6242111_0	1116369.KB890024_gene3987	1.228e-218	696.0	COG0392@1|root,COG2898@1|root,COG0392@2|Bacteria,COG2898@2|Bacteria,1MXH9@1224|Proteobacteria,2TUMC@28211|Alphaproteobacteria,43HSS@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Uncharacterised conserved protein (DUF2156)	MA20_08250	-	2.3.2.3	ko:K07027,ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	M00726	-	-	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	2.A.1.3.37,4.D.2	-	-	DUF2156,LPG_synthase_TM
DYD3_k127_6242111_5	224914.BMEII0681	1.182e-59	233.0	COG3946@1|root,COG3946@2|Bacteria,1R7R5@1224|Proteobacteria,2U5U1@28211|Alphaproteobacteria,1J2B3@118882|Brucellaceae	28211|Alphaproteobacteria	U	Bacterial virulence protein (VirJ)	-	-	-	-	-	-	-	-	-	-	-	-	VirJ
DYD3_k127_6242111_3	1366050.N234_17430	2.434e-71	244.0	COG2764@1|root,COG2764@2|Bacteria,1RF2S@1224|Proteobacteria,2VXFN@28216|Betaproteobacteria,1K7F5@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_6242111_7	509190.Cseg_1524	5.108e-43	160.0	COG0640@1|root,COG0640@2|Bacteria,1N0HB@1224|Proteobacteria,2UDT7@28211|Alphaproteobacteria,2KHBW@204458|Caulobacterales	204458|Caulobacterales	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_5
DYD3_k127_6242111_4	398527.Bphyt_5808	5.703e-70	245.0	COG3832@1|root,COG3832@2|Bacteria,1RJC5@1224|Proteobacteria,2W70J@28216|Betaproteobacteria,1K7IH@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_6242111_1	1449049.JONW01000013_gene4715	3.322e-104	359.0	COG3616@1|root,COG3616@2|Bacteria,1MVQE@1224|Proteobacteria,2TSQ3@28211|Alphaproteobacteria,2KGC4@204458|Caulobacterales	204458|Caulobacterales	E	Putative serine dehydratase domain	-	-	-	-	-	-	-	-	-	-	-	-	Ala_racemase_N,D-ser_dehydrat
DYD3_k127_6242111_6	1054213.HMPREF9946_01285	2.018e-43	168.0	COG0454@1|root,COG0456@2|Bacteria,1RBE6@1224|Proteobacteria,2U9H8@28211|Alphaproteobacteria,2JT25@204441|Rhodospirillales	204441|Rhodospirillales	K	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD3_k127_6242111_2	349124.Hhal_2060	7.48e-94	313.0	COG0282@1|root,COG0282@2|Bacteria,1MW61@1224|Proteobacteria,1RMKB@1236|Gammaproteobacteria,1WWEE@135613|Chromatiales	135613|Chromatiales	H	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction	ackA	-	2.7.2.1	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	M00357,M00579	R00315,R01353	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	Acetate_kinase
DYD3_k127_6257637_1	1380391.JIAS01000018_gene1043	3.714e-117	391.0	COG0600@1|root,COG0600@2|Bacteria,1MWS0@1224|Proteobacteria,2VET7@28211|Alphaproteobacteria,2JPSU@204441|Rhodospirillales	204441|Rhodospirillales	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K15554	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	BPD_transp_1
DYD3_k127_6257637_0	1380391.JIAS01000018_gene1042	1.73e-127	415.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TTIU@28211|Alphaproteobacteria,2JYM8@204441|Rhodospirillales	204441|Rhodospirillales	P	Substrate binding domain of ABC-type glycine betaine transport system	-	-	-	ko:K15553	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	NMT1_2
DYD3_k127_6257637_7	1131813.AQVT01000001_gene2368	9.001e-31	123.0	COG2824@1|root,COG2824@2|Bacteria,1RGUU@1224|Proteobacteria,2UFDJ@28211|Alphaproteobacteria,1JVC1@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	PFAM PhnA protein	phnA	-	-	ko:K06193	ko01120,map01120	-	-	-	ko00000	-	-	-	PhnA,PhnA_Zn_Ribbon
DYD3_k127_6257637_4	1089552.KI911559_gene299	1.8e-78	280.0	COG0438@1|root,COG0438@2|Bacteria,1MVKK@1224|Proteobacteria,2TUFG@28211|Alphaproteobacteria,2JQVA@204441|Rhodospirillales	204441|Rhodospirillales	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD3_k127_6257637_9	1121033.AUCF01000003_gene3326	7.091e-20	98.0	COG4671@1|root,COG4671@2|Bacteria,1NE6T@1224|Proteobacteria,2U08G@28211|Alphaproteobacteria,2JQPD@204441|Rhodospirillales	204441|Rhodospirillales	S	Glycosyltransferase family 28 C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tran_28_C
DYD3_k127_6257637_6	288000.BBta_7111	2.508e-54	206.0	COG1024@1|root,COG1024@2|Bacteria,1MVA6@1224|Proteobacteria,2TSXK@28211|Alphaproteobacteria,3JVUN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_18780	-	-	-	-	-	-	-	-	-	-	-	ECH_1
DYD3_k127_6257637_5	1040982.AXAL01000025_gene6709	2.607e-67	233.0	COG1595@1|root,COG1595@2|Bacteria,1RFN0@1224|Proteobacteria,2U8N2@28211|Alphaproteobacteria,43K4S@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_6257637_3	536019.Mesop_4524	1.131e-91	309.0	COG5662@1|root,COG5662@2|Bacteria,1RE23@1224|Proteobacteria,2U8T5@28211|Alphaproteobacteria,43JAW@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	AntiSigma factor	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6257637_2	1082933.MEA186_02163	2.025e-113	381.0	COG0670@1|root,COG0670@2|Bacteria,1MU69@1224|Proteobacteria,2TRSF@28211|Alphaproteobacteria,43GTF@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the BI1 family	ybhL	-	-	ko:K06890	-	-	-	-	ko00000	-	-	-	Bax1-I
DYD3_k127_6257637_8	935840.JAEQ01000001_gene2677	5.987e-26	119.0	COG3416@1|root,COG3416@2|Bacteria,1P8CZ@1224|Proteobacteria,2U6C3@28211|Alphaproteobacteria,43K8W@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2076)	-	-	-	ko:K09945	-	-	-	-	ko00000	-	-	-	DUF2076
DYD3_k127_6290654_0	1210884.HG799466_gene12806	2.6e-212	688.0	COG2307@1|root,COG2308@1|root,COG2307@2|Bacteria,COG2308@2|Bacteria,2IXTY@203682|Planctomycetes	203682|Planctomycetes	S	Circularly permuted ATP-grasp type 2	-	-	-	-	-	-	-	-	-	-	-	-	Alpha-E,CP_ATPgrasp_2
DYD3_k127_6290654_1	1121033.AUCF01000006_gene4075	2.759e-16	92.0	COG1305@1|root,COG1305@2|Bacteria,1MVMI@1224|Proteobacteria,2TRFC@28211|Alphaproteobacteria,2JQTP@204441|Rhodospirillales	204441|Rhodospirillales	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
DYD3_k127_6302691_1	1348657.M622_13715	7.028e-78	274.0	2EX42@1|root,31S3R@2|Bacteria,1RJCJ@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6302691_0	1415779.JOMH01000001_gene727	1.985e-141	459.0	COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,1RP71@1236|Gammaproteobacteria,1X5JW@135614|Xanthomonadales	135614|Xanthomonadales	C	COG1062 Zn-dependent alcohol dehydrogenases, class III	-	-	1.1.1.90	ko:K00055	ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220	M00537,M00538	R01763,R02611,R04304,R05282,R05347,R05348	RC00087,RC00116	ko00000,ko00001,ko00002,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_6302691_2	1415779.JOMH01000001_gene3086	1.907e-75	267.0	COG2909@1|root,COG2909@2|Bacteria,1MVZZ@1224|Proteobacteria,1S1EW@1236|Gammaproteobacteria,1X4TZ@135614|Xanthomonadales	135614|Xanthomonadales	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
DYD3_k127_6312964_10	1101192.KB910516_gene370	3.274e-25	123.0	COG1442@1|root,COG1442@2|Bacteria	2|Bacteria	M	lipopolysaccharide 3-alpha-galactosyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_8
DYD3_k127_6312964_6	1101192.KB910516_gene371	4.506e-62	239.0	COG2327@1|root,COG2327@2|Bacteria,1N1VM@1224|Proteobacteria,2UTMS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Polysaccharide pyruvyl transferase	-	-	-	-	-	-	-	-	-	-	-	-	PS_pyruv_trans
DYD3_k127_6312964_8	1282876.BAOK01000001_gene2408	7.896e-43	161.0	COG0360@1|root,COG0360@2|Bacteria,1RH82@1224|Proteobacteria,2U767@28211|Alphaproteobacteria,4BQK0@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	Binds together with S18 to 16S ribosomal RNA	rpsF	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904	-	ko:K02990	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S6
DYD3_k127_6312964_9	1380394.JADL01000009_gene3197	9.977e-38	143.0	COG0238@1|root,COG0238@2|Bacteria,1MZ8U@1224|Proteobacteria,2UC13@28211|Alphaproteobacteria,2JT7Q@204441|Rhodospirillales	204441|Rhodospirillales	J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	rpsR	-	-	ko:K02963	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S18
DYD3_k127_6312964_7	414684.RC1_1575	1.397e-60	214.0	COG0359@1|root,COG0359@2|Bacteria,1RD0R@1224|Proteobacteria,2TSC9@28211|Alphaproteobacteria,2JS4S@204441|Rhodospirillales	204441|Rhodospirillales	J	binds to the 23S rRNA	rplI	-	-	ko:K02939	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L9_C,Ribosomal_L9_N
DYD3_k127_6312964_2	1354722.JQLS01000008_gene2417	7.95e-140	458.0	COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,2TR8K@28211|Alphaproteobacteria,46NWD@74030|Roseovarius	28211|Alphaproteobacteria	M	COG2230 Cyclopropane fatty acid synthase and related methyltransferases	-	-	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	CMAS
DYD3_k127_6312964_0	1082933.MEA186_04901	5.084e-222	702.0	COG1226@1|root,COG4651@1|root,COG1226@2|Bacteria,COG4651@2|Bacteria,1MV34@1224|Proteobacteria,2TRC5@28211|Alphaproteobacteria,43IEK@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	ybaL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03455	-	-	-	-	ko00000	2.A.37	-	-	Na_H_Exchanger,TrkA_N
DYD3_k127_6312964_1	1333998.M2A_2268	4.714e-191	608.0	COG0305@1|root,COG0305@2|Bacteria,1MUG9@1224|Proteobacteria,2TSF9@28211|Alphaproteobacteria,4BPP7@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	L	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	dnaB	-	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB,DnaB_C
DYD3_k127_6312964_5	1500894.JQNN01000001_gene1495	2.255e-104	351.0	COG0787@1|root,COG0787@2|Bacteria,1MV0Q@1224|Proteobacteria,2VKUX@28216|Betaproteobacteria,473VT@75682|Oxalobacteraceae	28216|Betaproteobacteria	M	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids	alr	-	5.1.1.1	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502	-	R00401	RC00285	ko00000,ko00001,ko01000,ko01011	-	-	-	Ala_racemase_C,Ala_racemase_N
DYD3_k127_6312964_4	331869.BAL199_23507	3.291e-114	379.0	COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2TSGS@28211|Alphaproteobacteria,4BPSU@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	Q	Permease MlaE	mlaE	-	-	ko:K02066	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaE
DYD3_k127_6312964_3	402881.Plav_3484	7.358e-120	403.0	COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2TR2I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	ABC transporter	mkl	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
DYD3_k127_6312964_11	1380391.JIAS01000017_gene658	9.854e-10	66.0	COG1066@1|root,COG1066@2|Bacteria,1MUJQ@1224|Proteobacteria,2TS6F@28211|Alphaproteobacteria,2JQ3D@204441|Rhodospirillales	204441|Rhodospirillales	O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function	radA	-	-	ko:K04485	-	-	-	-	ko00000,ko03400	-	-	-	AAA_25,ATPase,ChlI
DYD3_k127_63231_5	366602.Caul_4535	1.003e-81	279.0	COG0483@1|root,COG0483@2|Bacteria,1MV4W@1224|Proteobacteria,2TV4R@28211|Alphaproteobacteria,2KG1E@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the inositol monophosphatase superfamily	-	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
DYD3_k127_63231_8	1156935.QWE_10102	4.786e-62	216.0	COG1522@1|root,COG1522@2|Bacteria,1RDGZ@1224|Proteobacteria,2U737@28211|Alphaproteobacteria,4BECX@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional	zrp	-	-	ko:K05800	-	-	-	-	ko00000,ko03000	-	-	-	AsnC_trans_reg,HTH_24
DYD3_k127_63231_4	1122963.AUHB01000012_gene1124	7.168e-92	308.0	COG1794@1|root,COG1794@2|Bacteria,1MV03@1224|Proteobacteria,2TRKQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	aspartate racemase	asr	GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	5.1.1.13	ko:K01779	ko00250,ko01054,map00250,map01054	-	R00491	RC00302	ko00000,ko00001,ko01000	-	-	-	Asp_Glu_race
DYD3_k127_63231_11	317655.Sala_1849	9.354e-20	94.0	COG2128@1|root,COG2128@2|Bacteria,1PRD9@1224|Proteobacteria,2V3NE@28211|Alphaproteobacteria,2KBUP@204457|Sphingomonadales	204457|Sphingomonadales	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_63231_10	1120950.KB892739_gene3893	6.753e-26	121.0	COG2128@1|root,COG2128@2|Bacteria	2|Bacteria	S	hydroperoxide reductase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_63231_7	1333998.M2A_1911	3.821e-69	252.0	COG1595@1|root,COG1595@2|Bacteria,1MXVA@1224|Proteobacteria,2TV85@28211|Alphaproteobacteria,4BS0R@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Sigma-70, region 4	MA20_06780	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_63231_6	1121033.AUCF01000001_gene2442	2.471e-73	255.0	COG2365@1|root,COG2365@2|Bacteria,1REIM@1224|Proteobacteria,2U7HD@28211|Alphaproteobacteria,2JYGQ@204441|Rhodospirillales	204441|Rhodospirillales	T	Tyrosine phosphatase family	-	-	-	-	-	-	-	-	-	-	-	-	DUF442,Y_phosphatase3
DYD3_k127_63231_0	1380394.JADL01000003_gene5132	7.662e-176	570.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,2JQAX@204441|Rhodospirillales	204441|Rhodospirillales	V	ABC-type multidrug transport system, ATPase and permease	msbA	-	-	ko:K06147,ko:K11085	ko02010,map02010	-	-	-	ko00000,ko00001,ko01000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_63231_9	1244869.H261_07111	1.727e-54	200.0	COG2121@1|root,COG2121@2|Bacteria,1MZID@1224|Proteobacteria,2TSGQ@28211|Alphaproteobacteria,2JS37@204441|Rhodospirillales	204441|Rhodospirillales	S	protein conserved in bacteria	-	-	-	ko:K09778	-	-	-	-	ko00000	-	-	-	DUF374
DYD3_k127_63231_1	1121033.AUCF01000001_gene2470	7.933e-131	432.0	COG1519@1|root,COG1519@2|Bacteria,1MU9F@1224|Proteobacteria,2TS37@28211|Alphaproteobacteria,2JQXE@204441|Rhodospirillales	204441|Rhodospirillales	M	3-deoxy-D-manno-octulosonic-acid transferase	kdtA	-	2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15	ko:K02527	ko00540,ko01100,map00540,map01100	M00060,M00080	R04658,R05074,R09763	RC00009,RC00077,RC00247	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT30	-	DUF374,Glycos_transf_N
DYD3_k127_63231_3	414684.RC1_3613	1.259e-93	320.0	COG1663@1|root,COG1663@2|Bacteria,1MU8G@1224|Proteobacteria,2TTZ4@28211|Alphaproteobacteria,2JPX7@204441|Rhodospirillales	204441|Rhodospirillales	M	Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA)	lpxK	-	2.7.1.130	ko:K00912	ko00540,ko01100,map00540,map01100	M00060	R04657	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	LpxK
DYD3_k127_63231_2	1037409.BJ6T_83570	2.655e-106	350.0	COG1028@1|root,COG1028@2|Bacteria,1MU5Y@1224|Proteobacteria,2TRNQ@28211|Alphaproteobacteria,3JRK8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_18175	-	1.1.1.30	ko:K00019	ko00072,ko00650,ko01100,map00072,map00650,map01100	M00088	R01361	RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
DYD3_k127_6334304_1	118166.JH976537_gene2247	1.785e-114	375.0	COG0174@1|root,COG0174@2|Bacteria,1G3HB@1117|Cyanobacteria,1HF5M@1150|Oscillatoriales	1117|Cyanobacteria	E	Glutamine synthetase, catalytic domain	-	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_6334304_0	1333856.L686_08330	3.009e-145	466.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,1RNXH@1236|Gammaproteobacteria,1Z3SN@136846|Pseudomonas stutzeri group	1236|Gammaproteobacteria	C	Aldo/keto reductase family	yajO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0017144,GO:0034641,GO:0042723,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:1901360,GO:1901564	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD3_k127_6334304_2	592316.Pat9b_1572	1.109e-17	86.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,1RQ0P@1236|Gammaproteobacteria,3VZ6P@53335|Pantoea	1236|Gammaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	-	ko:K00479	-	-	-	-	ko00000	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_6358531_10	402881.Plav_0678	5.251e-19	89.0	COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2TR39@28211|Alphaproteobacteria,1JNF0@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Insulinase (Peptidase family M16)	mpp	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M16,Peptidase_M16_C
DYD3_k127_6358531_4	631454.N177_2253	2.725e-75	257.0	COG1670@1|root,COG1670@2|Bacteria,1MVG4@1224|Proteobacteria,2TUIK@28211|Alphaproteobacteria,1JNUD@119043|Rhodobiaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	rimJ	-	2.3.1.128	ko:K03790	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_3
DYD3_k127_6358531_3	1112214.AHIS01000051_gene2422	1.379e-87	301.0	COG3975@1|root,COG3975@2|Bacteria,1N69B@1224|Proteobacteria,2U0ZK@28211|Alphaproteobacteria,2K9HG@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6358531_5	1089552.KI911559_gene3712	3.791e-73	258.0	COG1678@1|root,COG1678@2|Bacteria,1RCXM@1224|Proteobacteria,2TTX4@28211|Alphaproteobacteria,2JSB3@204441|Rhodospirillales	204441|Rhodospirillales	K	Belongs to the UPF0301 (AlgH) family	-	-	-	ko:K07735	-	-	-	-	ko00000,ko03000	-	-	-	DUF179
DYD3_k127_6358531_8	1110502.TMO_2995	2.994e-49	188.0	COG0664@1|root,COG0664@2|Bacteria,1MXID@1224|Proteobacteria,2U1G1@28211|Alphaproteobacteria,2JSUA@204441|Rhodospirillales	204441|Rhodospirillales	K	COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	-	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
DYD3_k127_6358531_0	1205680.CAKO01000030_gene4793	2.679e-194	625.0	COG2317@1|root,COG2317@2|Bacteria,1MW7T@1224|Proteobacteria,2TSMY@28211|Alphaproteobacteria,2JP9Q@204441|Rhodospirillales	204441|Rhodospirillales	E	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues	-	-	3.4.17.19	ko:K01299	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M32
DYD3_k127_6358531_7	1380394.JADL01000002_gene1268	7.649e-60	219.0	COG3346@1|root,COG3346@2|Bacteria,1MWWG@1224|Proteobacteria,2U0N5@28211|Alphaproteobacteria,2JSD9@204441|Rhodospirillales	204441|Rhodospirillales	S	SURF1-like protein	-	-	-	ko:K14998	-	-	-	-	ko00000,ko03029	3.D.4.8	-	-	SURF1
DYD3_k127_6358531_9	438753.AZC_2954	2.894e-30	124.0	COG5349@1|root,COG5349@2|Bacteria,1N0WU@1224|Proteobacteria,2UCE7@28211|Alphaproteobacteria,3EZMY@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF983)	-	-	-	-	-	-	-	-	-	-	-	-	DUF983
DYD3_k127_6358531_1	316055.RPE_4756	3.322e-123	407.0	COG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,2TQWA@28211|Alphaproteobacteria,3JV28@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	cytochrome c oxidase subunit III	ctaE	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.9.3.1	ko:K02276	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.4,3.D.4.6	-	-	COX3
DYD3_k127_6358531_6	570967.JMLV01000014_gene2049	1.397e-61	220.0	COG3175@1|root,COG3175@2|Bacteria,1RDTU@1224|Proteobacteria,2U6ZT@28211|Alphaproteobacteria,2JSCM@204441|Rhodospirillales	204441|Rhodospirillales	O	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I	ctaG	-	-	ko:K02258	ko00190,ko01100,ko04714,map00190,map01100,map04714	M00154	-	-	ko00000,ko00001,ko00002,ko03029	3.D.4.8	-	-	CtaG_Cox11
DYD3_k127_6358531_2	438753.AZC_2958	8.96e-113	370.0	COG0109@1|root,COG0109@2|Bacteria,1MW3S@1224|Proteobacteria,2TRD8@28211|Alphaproteobacteria,3EYK1@335928|Xanthobacteraceae	28211|Alphaproteobacteria	O	Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group	ctaB	GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.141	ko:K02257	ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714	M00154	R07411	RC01786	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029	-	-	-	UbiA
DYD3_k127_6412892_8	1333998.M2A_1174	2.699e-30	122.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTMV@28211|Alphaproteobacteria,4BQWG@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Zinc-binding dehydrogenase	MA20_28180	-	1.1.1.1	ko:K00001,ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_6412892_3	1054213.HMPREF9946_03764	5.752e-204	642.0	COG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2TRA4@28211|Alphaproteobacteria,2JQSE@204441|Rhodospirillales	204441|Rhodospirillales	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_6412892_5	1287276.X752_06275	5.533e-77	263.0	COG1309@1|root,COG1309@2|Bacteria,1RADD@1224|Proteobacteria,2U6I8@28211|Alphaproteobacteria,43H0D@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6412892_0	1110502.TMO_0118	0.0	1011.0	COG1884@1|root,COG2185@1|root,COG1884@2|Bacteria,COG2185@2|Bacteria,1MUXX@1224|Proteobacteria,2TQYC@28211|Alphaproteobacteria,2JZ17@204441|Rhodospirillales	204441|Rhodospirillales	I	COG1884 Methylmalonyl-CoA mutase, N-terminal domain subunit	meaA	-	5.4.99.63	ko:K14447	ko00630,ko01120,ko01200,map00630,map01120,map01200	M00373	R09292	RC02835	ko00000,ko00001,ko00002,ko01000	-	-	-	B12-binding,MM_CoA_mutase
DYD3_k127_6412892_2	1205680.CAKO01000029_gene5114	1.263e-240	747.0	COG0604@1|root,COG0604@2|Bacteria,1MXIK@1224|Proteobacteria,2TQPR@28211|Alphaproteobacteria,2JPMR@204441|Rhodospirillales	204441|Rhodospirillales	C	COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases	-	-	1.3.1.85	ko:K14446	ko00630,ko01120,ko01200,map00630,map01120,map01200	M00373	R09291	RC02481	ko00000,ko00001,ko00002,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_6412892_1	402881.Plav_1613	1.107e-245	769.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR78@28211|Alphaproteobacteria,1JPSR@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	mcd	-	1.3.8.12	ko:K14448	ko00630,ko01120,ko01200,map00630,map01120,map01200	M00373	R09293	RC02483	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_6412892_9	1120705.FG95_00271	1.357e-27	123.0	COG2050@1|root,COG2050@2|Bacteria,1RBET@1224|Proteobacteria,2U5TM@28211|Alphaproteobacteria,2K8CX@204457|Sphingomonadales	204457|Sphingomonadales	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_6412892_4	936455.KI421499_gene4116	2.314e-87	291.0	COG3832@1|root,COG3832@2|Bacteria,1RCZK@1224|Proteobacteria,2TV1V@28211|Alphaproteobacteria,3JUK6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	MA20_15105	-	-	-	-	-	-	-	-	-	-	-	AHSA1
DYD3_k127_6412892_6	381666.H16_B0885	6.055e-69	241.0	COG5649@1|root,COG5649@2|Bacteria,1RDDG@1224|Proteobacteria,2W0C7@28216|Betaproteobacteria,1KD98@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Domain of unknown function (DU1801)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
DYD3_k127_6412892_10	1538295.JY96_02730	9.454e-27	117.0	COG3686@1|root,COG3686@2|Bacteria,1N8EA@1224|Proteobacteria,2VWRC@28216|Betaproteobacteria,1KMSS@119065|unclassified Burkholderiales	28216|Betaproteobacteria	S	MAPEG family	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
DYD3_k127_6412892_7	211114.JOEF01000007_gene966	1.49e-37	152.0	COG0346@1|root,COG0346@2|Bacteria,2GRGB@201174|Actinobacteria,4E5WM@85010|Pseudonocardiales	201174|Actinobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase_3
DYD3_k127_6412892_11	40384.G7XX32	0.0001427	51.0	COG0666@1|root,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta,3NZ8C@4751|Fungi,3QR7F@4890|Ascomycota,20C1R@147545|Eurotiomycetes,3SBFJ@5042|Eurotiales	4751|Fungi	M	Ankyrin repeat	-	-	-	-	-	-	-	-	-	-	-	-	AAA_22,Ank_2,Ank_4,NACHT
DYD3_k127_6425040_2	314287.GB2207_03939	3.643e-97	343.0	2DB8N@1|root,2Z7S9@2|Bacteria,1PZ8J@1224|Proteobacteria,1S1F6@1236|Gammaproteobacteria,1J5YW@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	S	Protein of unknown function (DUF3047)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3047
DYD3_k127_6425040_1	1123504.JQKD01000002_gene3793	9.091e-128	415.0	COG1028@1|root,COG1028@2|Bacteria,1MXNQ@1224|Proteobacteria,2VJQ2@28216|Betaproteobacteria,4A9SP@80864|Comamonadaceae	28216|Betaproteobacteria	IQ	PFAM Short-chain dehydrogenase reductase SDR	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
DYD3_k127_6425040_0	1333998.M2A_2126	7.248e-154	497.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TQRA@28211|Alphaproteobacteria,4BP67@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, N-terminal domain	MA20_04655	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_6425040_4	391735.Veis_0111	2.681e-46	175.0	COG2128@1|root,COG2128@2|Bacteria,1MVWP@1224|Proteobacteria,2VS89@28216|Betaproteobacteria,4AG1D@80864|Comamonadaceae	28216|Betaproteobacteria	S	PFAM Carboxymuconolactone decarboxylase	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_6425040_3	1282876.BAOK01000002_gene676	1.971e-87	306.0	COG1028@1|root,COG1028@2|Bacteria,1R4BJ@1224|Proteobacteria,2U1Q1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_10020	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_6425040_5	1198452.Jab_2c01330	2.411e-35	147.0	COG3759@1|root,COG3759@2|Bacteria,1MZ4F@1224|Proteobacteria,2VUPP@28216|Betaproteobacteria	28216|Betaproteobacteria	S	membrane	-	-	-	ko:K08987	-	-	-	-	ko00000	-	-	-	DUF1304
DYD3_k127_6427383_3	1430440.MGMSRv2_4213	9.119e-21	92.0	COG1344@1|root,COG1344@2|Bacteria,1MXC4@1224|Proteobacteria,2TRIP@28211|Alphaproteobacteria,2JSK0@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	-	-	-	ko:K02406	ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
DYD3_k127_6427383_2	1430440.MGMSRv2_2475	2.197e-24	108.0	COG5443@1|root,COG5443@2|Bacteria,1RD3V@1224|Proteobacteria,2U7PK@28211|Alphaproteobacteria,2JTX9@204441|Rhodospirillales	204441|Rhodospirillales	N	Flagellar protein FlbT	-	-	-	ko:K06601	-	-	-	-	ko00000,ko02035	-	-	-	FlbT
DYD3_k127_6427383_1	1430440.MGMSRv2_4215	1.029e-33	135.0	COG5442@1|root,COG5442@2|Bacteria,1Q6PT@1224|Proteobacteria,2VCSZ@28211|Alphaproteobacteria,2JUF1@204441|Rhodospirillales	204441|Rhodospirillales	N	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K06602	-	-	-	-	ko00000,ko02035	-	-	-	FlaF
DYD3_k127_6427383_4	1218075.BAYA01000038_gene6387	4.302e-07	63.0	COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria,1MVMG@1224|Proteobacteria,2VH3M@28216|Betaproteobacteria,1K03X@119060|Burkholderiaceae	28216|Betaproteobacteria	O	Tetratricopeptide TPR_2 repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_41,SEC-C,TPR_1,TPR_16,TPR_2,TPR_8
DYD3_k127_6427383_0	1430440.MGMSRv2_4217	4.943e-92	330.0	COG2604@1|root,COG2604@2|Bacteria,1MUQQ@1224|Proteobacteria,2UBJ3@28211|Alphaproteobacteria,2JUFB@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function DUF115	-	-	-	-	-	-	-	-	-	-	-	-	MAF_flag10
DYD3_k127_643079_4	1502850.FG91_01945	2.795e-58	209.0	COG0784@1|root,COG1595@1|root,COG0784@2|Bacteria,COG1595@2|Bacteria,1MX3Y@1224|Proteobacteria,2TT2R@28211|Alphaproteobacteria,2K0S1@204457|Sphingomonadales	204457|Sphingomonadales	T	In Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Sigma70_r4_2
DYD3_k127_643079_2	1380391.JIAS01000011_gene5514	1.732e-82	296.0	COG3920@1|root,COG3920@2|Bacteria,1MVPJ@1224|Proteobacteria,2TSSQ@28211|Alphaproteobacteria,2JSS8@204441|Rhodospirillales	204441|Rhodospirillales	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HATPase_c_2,HisKA_2
DYD3_k127_643079_5	1121033.AUCF01000006_gene4250	3.088e-54	203.0	COG1597@1|root,COG1597@2|Bacteria,1MY37@1224|Proteobacteria,2U5Y7@28211|Alphaproteobacteria,2JSMM@204441|Rhodospirillales	204441|Rhodospirillales	I	COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase	-	-	-	-	-	-	-	-	-	-	-	-	DAGK_cat
DYD3_k127_643079_0	402881.Plav_0758	2.16e-122	400.0	COG2070@1|root,COG2070@2|Bacteria,1MU2F@1224|Proteobacteria,2TUT7@28211|Alphaproteobacteria,1JNXV@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	PFAM 2-nitropropane dioxygenase NPD	-	-	1.13.12.16,1.3.1.9	ko:K00459,ko:K02371	ko00061,ko00910,ko01100,ko01212,map00061,map00910,map01100,map01212	M00083	R00025,R04429,R04724,R04955,R04958,R04961,R04966,R04969,R07765	RC00052,RC00076,RC02541,RC02759	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	NMO
DYD3_k127_643079_1	402881.Plav_2640	1.471e-113	372.0	COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2TRIH@28211|Alphaproteobacteria,1JQ49@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_16365	-	4.2.1.149	ko:K08299	-	-	R10675	RC01095	ko00000,ko01000	-	-	-	ECH_1
DYD3_k127_643079_3	402881.Plav_2134	1.734e-80	276.0	COG0384@1|root,COG0384@2|Bacteria,1MUAS@1224|Proteobacteria,2U3ND@28211|Alphaproteobacteria,1JNSJ@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Phenazine biosynthesis-like protein	-	-	-	-	-	-	-	-	-	-	-	-	PhzC-PhzF
DYD3_k127_643079_6	378806.STAUR_5485	3.4e-28	116.0	COG1167@1|root,COG1167@2|Bacteria,1MUJE@1224|Proteobacteria,42M1Z@68525|delta/epsilon subdivisions,2WJYC@28221|Deltaproteobacteria,2YXXR@29|Myxococcales	28221|Deltaproteobacteria	K	helix_turn_helix gluconate operon transcriptional repressor	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
DYD3_k127_6431249_1	316055.RPE_2249	3.474e-174	554.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JQQB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_22975	-	-	ko:K11731	ko00281,map00281	-	R08089	RC01893	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_6431249_4	402881.Plav_0763	6.064e-53	190.0	COG1846@1|root,COG1846@2|Bacteria,1Q6UI@1224|Proteobacteria,2USAH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
DYD3_k127_6431249_0	314254.OA2633_05361	2.038e-255	812.0	COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,2TRHK@28211|Alphaproteobacteria,43WUI@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	ligA	GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2
DYD3_k127_6431249_2	1207063.P24_17710	1.979e-165	537.0	COG0497@1|root,COG0497@2|Bacteria,1MUNP@1224|Proteobacteria,2TREW@28211|Alphaproteobacteria,2JQMN@204441|Rhodospirillales	204441|Rhodospirillales	L	May be involved in recombinational repair of damaged DNA	recN	-	-	ko:K03631	-	-	-	-	ko00000,ko03400	-	-	-	SMC_N
DYD3_k127_6431249_3	1121033.AUCF01000005_gene5134	3.005e-102	343.0	COG4105@1|root,COG4105@2|Bacteria,1MVS5@1224|Proteobacteria,2TRZ5@28211|Alphaproteobacteria,2JP9Y@204441|Rhodospirillales	204441|Rhodospirillales	M	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	bamD	-	-	ko:K05807	-	-	-	-	ko00000,ko02000	1.B.33.1	-	-	YfiO
DYD3_k127_6431249_5	595460.RRSWK_06226	3.763e-05	52.0	COG4625@1|root,COG4625@2|Bacteria	2|Bacteria	T	pathogenesis	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,DnaJ,PATR,Phytase-like
DYD3_k127_646492_2	1168059.KB899087_gene2625	8.133e-78	263.0	COG0477@1|root,COG2814@2|Bacteria,1MV8D@1224|Proteobacteria,2TT4B@28211|Alphaproteobacteria,3EYAP@335928|Xanthobacteraceae	28211|Alphaproteobacteria	EGP	COG0477 Permeases of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD3_k127_646492_3	1502851.FG93_05073	3.446e-32	138.0	COG0640@1|root,COG0640@2|Bacteria,1MZAU@1224|Proteobacteria,2U9NV@28211|Alphaproteobacteria,3JZQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	ko:K03892	-	-	-	-	ko00000,ko03000	-	-	-	HTH_20
DYD3_k127_646492_1	1320556.AVBP01000003_gene3896	2.406e-81	279.0	COG0394@1|root,COG0394@2|Bacteria,1MWYQ@1224|Proteobacteria,2TU1U@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Belongs to the low molecular weight phosphotyrosine protein phosphatase family	arsC1	-	1.20.4.1	ko:K03741	-	-	-	-	ko00000,ko01000	-	-	-	LMWPc
DYD3_k127_646492_0	1320556.AVBP01000003_gene4055	1.031e-177	571.0	COG0798@1|root,COG0798@2|Bacteria,1MUXY@1224|Proteobacteria,2TSVJ@28211|Alphaproteobacteria,43HFQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Sodium Bile acid symporter family	-	-	-	ko:K03325	-	-	-	-	ko00000,ko02000	2.A.59	-	-	SBF
DYD3_k127_647581_4	883126.HMPREF9710_00859	7.791e-73	254.0	COG0300@1|root,COG0300@2|Bacteria,1MWNZ@1224|Proteobacteria,2VJFQ@28216|Betaproteobacteria,4741W@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
DYD3_k127_647581_5	1532558.JL39_13425	6.876e-43	162.0	COG1846@1|root,COG1846@2|Bacteria,1N0BP@1224|Proteobacteria,2VFZK@28211|Alphaproteobacteria,4BB01@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_27,MarR
DYD3_k127_647581_3	335659.S23_56060	2.002e-88	320.0	COG2199@1|root,COG2202@1|root,COG2202@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2TU0D@28211|Alphaproteobacteria,3JRER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,PAS_3,PAS_4,PAS_9,dCache_1
DYD3_k127_647581_2	1122132.AQYH01000019_gene375	5.076e-95	319.0	COG0583@1|root,COG0583@2|Bacteria,1PR6U@1224|Proteobacteria,2TUC6@28211|Alphaproteobacteria,4BAFT@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_647581_1	438753.AZC_4597	6.096e-98	329.0	COG0697@1|root,COG0697@2|Bacteria,1MXCD@1224|Proteobacteria,2TR27@28211|Alphaproteobacteria,3EYAE@335928|Xanthobacteraceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_19820	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_647581_0	1380394.JADL01000001_gene3102	4.838e-131	428.0	COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2UQAG@28211|Alphaproteobacteria,2JR6D@204441|Rhodospirillales	204441|Rhodospirillales	V	COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components	-	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_6479507_5	557599.MKAN_00980	8.239e-33	132.0	COG0204@1|root,COG0204@2|Bacteria,2I1UA@201174|Actinobacteria,2344M@1762|Mycobacteriaceae	201174|Actinobacteria	I	Glycerol acyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acyltransferase
DYD3_k127_6479507_4	1235457.C404_00965	7.366e-64	224.0	COG3644@1|root,COG3644@2|Bacteria,1RK12@1224|Proteobacteria,2VRFE@28216|Betaproteobacteria,1K741@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2239)	-	-	-	ko:K09965	-	-	-	-	ko00000	-	-	-	DUF2239
DYD3_k127_6479507_2	588932.JHOF01000023_gene1978	2.875e-78	270.0	COG4380@1|root,COG4380@2|Bacteria,1R3WM@1224|Proteobacteria,2U71Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Putative bacterial lipoprotein (DUF799)	-	-	-	-	-	-	-	-	-	-	-	-	DUF799
DYD3_k127_6479507_6	1280946.HY29_01810	1.242e-25	111.0	COG4259@1|root,COG4259@2|Bacteria,1Q2NA@1224|Proteobacteria,2UITJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4810)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4810
DYD3_k127_6479507_1	1035191.HMPREF0185_03105	1.296e-94	319.0	COG1462@1|root,COG1462@2|Bacteria,1NDU8@1224|Proteobacteria,2U5VW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Curli production assembly/transport component CsgG	-	-	-	-	-	-	-	-	-	-	-	-	CsgG
DYD3_k127_6479507_3	1207063.P24_02286	5.866e-69	239.0	COG0247@1|root,COG0247@2|Bacteria,1RF02@1224|Proteobacteria,2U69V@28211|Alphaproteobacteria,2JRWN@204441|Rhodospirillales	204441|Rhodospirillales	C	Protein of unknown function (DUF3501)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3501
DYD3_k127_6479507_0	1207063.P24_02281	1.934e-217	681.0	COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2U059@28211|Alphaproteobacteria,2JQVN@204441|Rhodospirillales	204441|Rhodospirillales	C	Cysteine-rich domain	-	-	-	-	-	-	-	-	-	-	-	-	CCG
DYD3_k127_6488039_9	1122132.AQYH01000010_gene4306	1.178e-39	152.0	COG2832@1|root,COG2832@2|Bacteria,1N7BI@1224|Proteobacteria,2UFAC@28211|Alphaproteobacteria,4BFKU@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	ko:K09790	-	-	-	-	ko00000	-	-	-	DUF454
DYD3_k127_6488039_0	639283.Snov_0783	5.39e-149	507.0	COG3239@1|root,COG3239@2|Bacteria,1MY4I@1224|Proteobacteria,2TUF8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Fatty acid desaturase	des	-	1.14.19.23,1.14.19.45	ko:K10255	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
DYD3_k127_6488039_8	1054213.HMPREF9946_04156	2.261e-54	197.0	COG3932@1|root,COG3932@2|Bacteria,1MZD5@1224|Proteobacteria,2U77X@28211|Alphaproteobacteria,2JT65@204441|Rhodospirillales	204441|Rhodospirillales	S	Exopolysaccharide synthesis, ExoD	-	-	-	-	-	-	-	-	-	-	-	-	ExoD
DYD3_k127_6488039_2	402881.Plav_0641	4.081e-97	327.0	COG0196@1|root,COG0196@2|Bacteria,1MV9I@1224|Proteobacteria,2TTUY@28211|Alphaproteobacteria,1JN6B@119043|Rhodobiaceae	28211|Alphaproteobacteria	H	Riboflavin kinase	ribF	-	2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_syn,Flavokinase
DYD3_k127_6488039_7	85643.Tmz1t_1596	1.055e-56	201.0	COG2030@1|root,COG2030@2|Bacteria,1MWPK@1224|Proteobacteria,2VREB@28216|Betaproteobacteria,2KWED@206389|Rhodocyclales	206389|Rhodocyclales	I	N-terminal half of MaoC dehydratase	-	-	4.2.1.55	ko:K17865	ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200	M00373	R03027	RC00831	ko00000,ko00001,ko00002,ko01000	-	-	-	MaoC_dehydratas
DYD3_k127_6488039_4	1282876.BAOK01000001_gene2972	2.489e-61	216.0	COG0745@1|root,COG0745@2|Bacteria,1RDNP@1224|Proteobacteria,2U7BP@28211|Alphaproteobacteria,4BQDK@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	KT	cheY-homologous receiver domain	QU41_12045	-	-	ko:K03413	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko02022,ko02035	-	-	-	Response_reg
DYD3_k127_6488039_6	1122137.AQXF01000001_gene2794	1.474e-58	214.0	COG3143@1|root,COG3143@2|Bacteria,1MW23@1224|Proteobacteria,2TTS0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NT	chemotaxis protein	-	-	-	ko:K03414	ko02030,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheZ
DYD3_k127_6488039_10	1173026.Glo7428_3046	2.311e-36	150.0	COG3315@1|root,COG3315@2|Bacteria,1G5DY@1117|Cyanobacteria	1117|Cyanobacteria	Q	Tetracenomycin c synthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	LCM
DYD3_k127_6488039_3	1122929.KB908215_gene1060	8.012e-78	269.0	COG0647@1|root,COG0647@2|Bacteria,1MU9Y@1224|Proteobacteria,2TUH0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	sugar phosphatases of the HAD superfamily	MA20_05625	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_6,Hydrolase_like
DYD3_k127_6488039_1	1333998.M2A_1452	5.037e-118	394.0	COG4690@1|root,COG4690@2|Bacteria,1RBRZ@1224|Proteobacteria,2U9EN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	dipeptidase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6488039_5	1279038.KB907347_gene3198	4.547e-61	215.0	COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,2TU17@28211|Alphaproteobacteria,2JSXW@204441|Rhodospirillales	204441|Rhodospirillales	O	Belongs to the glutathione peroxidase family	-	-	1.11.1.9	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	-	R00274,R07034,R07035	RC00011,RC00982	ko00000,ko00001,ko01000	-	-	-	GSHPx
DYD3_k127_6497952_3	1121033.AUCF01000008_gene5689	1.095e-137	443.0	COG0260@1|root,COG0260@2|Bacteria,1MUIN@1224|Proteobacteria,2TSI6@28211|Alphaproteobacteria,2JPVI@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the peptidase M17 family	pepB	-	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17
DYD3_k127_6497952_5	1187851.A33M_3699	1.57e-68	246.0	COG0791@1|root,COG0791@2|Bacteria,1MW03@1224|Proteobacteria,2TSFG@28211|Alphaproteobacteria,3FE7I@34008|Rhodovulum	28211|Alphaproteobacteria	M	NlpC/P60 family	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60,SH3_3
DYD3_k127_6497952_0	1150469.RSPPHO_03044	8.675e-189	610.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,2JQ4Z@204441|Rhodospirillales	204441|Rhodospirillales	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K13896	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	ABC_tran,oligo_HPY
DYD3_k127_6497952_9	314256.OG2516_09523	0.000392	44.0	2D8NJ@1|root,32TRP@2|Bacteria,1N6PQ@1224|Proteobacteria,2VGWA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6497952_2	1054213.HMPREF9946_04534	2.334e-154	494.0	COG4174@1|root,COG4174@2|Bacteria,1MVKE@1224|Proteobacteria,2TQJD@28211|Alphaproteobacteria,2JQ3C@204441|Rhodospirillales	204441|Rhodospirillales	P	transport system, permease component	-	-	-	ko:K13894	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	BPD_transp_1
DYD3_k127_6497952_1	1267005.KB911255_gene2897	2.297e-187	604.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,3N7Z7@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	E	Extracellular solute-binding protein	yejA	-	-	ko:K13893	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	SBP_bac_5
DYD3_k127_6497952_6	1144343.PMI41_02790	7.821e-21	106.0	COG0457@1|root,COG0457@2|Bacteria,1NA2B@1224|Proteobacteria,2UGJP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SGNH hydrolase-like domain, acetyltransferase AlgX	-	-	-	-	-	-	-	-	-	-	-	-	ALGX
DYD3_k127_6497952_8	525904.Tter_0083	0.0002482	51.0	COG0457@1|root,COG5635@1|root,COG0457@2|Bacteria,COG5635@2|Bacteria,2NPK1@2323|unclassified Bacteria	2|Bacteria	T	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	HEAT_2,NACHT,SIR2_2,TPR_1,TPR_11,TPR_2,TPR_8
DYD3_k127_6497952_4	1207063.P24_02136	2.043e-105	353.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,2JQ6J@204441|Rhodospirillales	204441|Rhodospirillales	E	COG4166 ABC-type oligopeptide transport system, periplasmic component	-	-	-	ko:K13893	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	SBP_bac_5
DYD3_k127_6513054_3	1238182.C882_0549	1.377e-64	222.0	COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2TR5X@28211|Alphaproteobacteria,2JPJY@204441|Rhodospirillales	204441|Rhodospirillales	E	Peptidase family M20/M25/M40	-	-	3.5.1.6,3.5.1.87	ko:K06016	ko00240,ko01100,map00240,map01100	M00046	R00905,R04666	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
DYD3_k127_6513054_0	1122132.AQYH01000004_gene1621	4.624e-239	743.0	COG0167@1|root,COG1146@1|root,COG0167@2|Bacteria,COG1146@2|Bacteria,1MXER@1224|Proteobacteria,2TSPK@28211|Alphaproteobacteria,4B9K9@82115|Rhizobiaceae	28211|Alphaproteobacteria	C	Dehydrogenase	preA	GO:0003674,GO:0003824,GO:0003954,GO:0006139,GO:0006206,GO:0006208,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016491,GO:0016651,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575	1.3.1.1	ko:K17723	ko00240,ko00410,ko00770,ko01100,map00240,map00410,map00770,map01100	M00046	R00977,R01414,R11026	RC00072,RC00123	ko00000,ko00001,ko00002,ko01000	-	-	-	DHO_dh,Fer4_21,Fer4_4,Fer4_6
DYD3_k127_6513054_2	1089552.KI911559_gene1091	2.067e-176	563.0	COG0493@1|root,COG0493@2|Bacteria,1MU2H@1224|Proteobacteria,2TQK5@28211|Alphaproteobacteria,2JR1M@204441|Rhodospirillales	204441|Rhodospirillales	E	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	-	-	1.3.1.1	ko:K17722	ko00240,ko00410,ko00770,ko01100,map00240,map00410,map00770,map01100	M00046	R00977,R01414,R11026	RC00072,RC00123	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer4_20,NADH_4Fe-4S,Pyr_redox_2
DYD3_k127_6513054_1	1122603.ATVI01000013_gene1305	3.685e-186	589.0	COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,1RNQP@1236|Gammaproteobacteria,1X319@135614|Xanthomonadales	135614|Xanthomonadales	P	L-lysine 6-monooxygenase (NADPH-requiring)	-	-	-	ko:K07222	-	-	-	-	ko00000	-	-	-	Pyr_redox_3
DYD3_k127_6513054_4	1168059.KB899087_gene3676	6.02e-09	57.0	COG2072@1|root,COG2072@2|Bacteria,1N7E1@1224|Proteobacteria,2UF45@28211|Alphaproteobacteria,3EZUS@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	flavoprotein involved in K transport	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6517231_0	1437824.BN940_07701	6.186e-122	406.0	COG2233@1|root,COG2233@2|Bacteria,1MUN9@1224|Proteobacteria,2W3TQ@28216|Betaproteobacteria,3T8T9@506|Alcaligenaceae	28216|Betaproteobacteria	F	Permease family	-	-	-	ko:K03458	-	-	-	-	ko00000	2.A.40	-	-	Xan_ur_permease
DYD3_k127_6517231_4	159450.NH14_24890	2.716e-27	114.0	COG1366@1|root,COG1366@2|Bacteria,1N7D9@1224|Proteobacteria,2VWEF@28216|Betaproteobacteria,1K90A@119060|Burkholderiaceae	28216|Betaproteobacteria	T	STAS domain	btrV	-	-	ko:K06378	-	-	-	-	ko00000	-	-	-	STAS,STAS_2
DYD3_k127_6517231_1	1207063.P24_03485	3.578e-116	402.0	COG2208@1|root,COG2208@2|Bacteria,1MXJQ@1224|Proteobacteria,2VEZQ@28211|Alphaproteobacteria,2JRJA@204441|Rhodospirillales	204441|Rhodospirillales	KT	Sigma factor PP2C-like phosphatases	-	-	3.1.3.3	ko:K07315	-	-	-	-	ko00000,ko01000,ko03021	-	-	-	HAMP,SpoIIE
DYD3_k127_6517231_5	1110502.TMO_1527	7.089e-16	91.0	COG2172@1|root,COG2172@2|Bacteria,1N9RD@1224|Proteobacteria,2UCGB@28211|Alphaproteobacteria,2JTM5@204441|Rhodospirillales	204441|Rhodospirillales	T	Histidine kinase-like ATPase domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c_2
DYD3_k127_6517231_3	1454004.AW11_00463	1.284e-50	200.0	COG0765@1|root,COG0765@2|Bacteria,1N32B@1224|Proteobacteria	1224|Proteobacteria	E	amino acid transport	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6517231_2	1005048.CFU_1625	7.766e-59	216.0	COG0765@1|root,COG0834@1|root,COG0765@2|Bacteria,COG0834@2|Bacteria,1QQXM@1224|Proteobacteria,2VKYP@28216|Betaproteobacteria,475YT@75682|Oxalobacteraceae	28216|Betaproteobacteria	ET	Periplasmic component of amino acid ABC-type transporter signal transduction system	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_6523831_0	402881.Plav_1467	1.961e-90	306.0	COG1633@1|root,COG1633@2|Bacteria,1R5XX@1224|Proteobacteria,2TTCD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)	-	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase_2,Rubrerythrin
DYD3_k127_6523831_1	314254.OA2633_09009	6.041e-33	131.0	COG0355@1|root,COG0355@2|Bacteria,1RHE4@1224|Proteobacteria,2UBXX@28211|Alphaproteobacteria,43Y97@69657|Hyphomonadaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane	atpC	GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600	-	ko:K02113,ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_DE_N
DYD3_k127_6523831_2	883078.HMPREF9695_04505	1.682e-31	123.0	COG0055@1|root,COG0055@2|Bacteria,1MUFU@1224|Proteobacteria,2TRGP@28211|Alphaproteobacteria,3JTVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits	atpD	-	3.6.3.14	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_N
DYD3_k127_654489_6	187272.Mlg_2130	2.418e-19	88.0	COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,1RP09@1236|Gammaproteobacteria,1WX0B@135613|Chromatiales	135613|Chromatiales	O	heat shock protein DnaJ	-	-	-	ko:K05516	-	-	-	-	ko00000,ko03036,ko03110	-	-	-	DnaJ,DnaJ_C
DYD3_k127_654489_7	398527.Bphyt_6321	1.249e-17	89.0	COG0789@1|root,COG0789@2|Bacteria,1N9MT@1224|Proteobacteria,2VVPZ@28216|Betaproteobacteria,1K9TU@119060|Burkholderiaceae	28216|Betaproteobacteria	K	MerR HTH family regulatory protein	-	-	-	ko:K18997	-	-	-	-	ko00000,ko03036	-	-	-	MerR_2
DYD3_k127_654489_5	381666.H16_A3685	2.179e-19	99.0	COG4322@1|root,COG4322@2|Bacteria,1ND4T@1224|Proteobacteria,2VX1M@28216|Betaproteobacteria,1KHGF@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2272)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2272
DYD3_k127_654489_2	402881.Plav_0602	4.818e-72	268.0	COG0300@1|root,COG0300@2|Bacteria,1REEM@1224|Proteobacteria,2UDWB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_654489_0	402881.Plav_0603	4.444e-229	715.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TTY2@28211|Alphaproteobacteria,1JPCF@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Flavin-binding monooxygenase-like	-	-	-	-	-	-	-	-	-	-	-	-	FMO-like
DYD3_k127_654489_4	402881.Plav_0604	1.943e-55	200.0	COG1309@1|root,COG1309@2|Bacteria,1RG78@1224|Proteobacteria,2U8YH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_654489_3	1126627.BAWE01000004_gene4605	1.771e-67	239.0	COG1386@1|root,COG1386@2|Bacteria,1PUA6@1224|Proteobacteria,2TU64@28211|Alphaproteobacteria,3JUGS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves	scpB	-	-	ko:K06024	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpB
DYD3_k127_654489_1	1205680.CAKO01000002_gene2564	6.546e-82	278.0	COG1354@1|root,COG1354@2|Bacteria,1MVCN@1224|Proteobacteria,2TS1V@28211|Alphaproteobacteria,2JR8P@204441|Rhodospirillales	204441|Rhodospirillales	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves	scpA	-	-	ko:K05896	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpA
DYD3_k127_6550889_8	1230476.C207_04834	3.137e-23	101.0	COG0375@1|root,COG0375@2|Bacteria,1MZJH@1224|Proteobacteria,2UBR0@28211|Alphaproteobacteria,3JZHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Probably plays a role in a hydrogenase nickel cofactor insertion step	-	-	-	ko:K04651	-	-	-	-	ko00000,ko03110	-	-	-	HypA
DYD3_k127_6550889_3	1230476.C207_04835	1.094e-158	529.0	COG0309@1|root,COG0309@2|Bacteria,1MVCC@1224|Proteobacteria,2TQSJ@28211|Alphaproteobacteria,3JRGA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	hydrogenase expression formation protein	hypE	-	-	ko:K04655	-	-	-	-	ko00000	-	-	-	AIRS,AIRS_C
DYD3_k127_6550889_1	1230476.C207_04836	3.062e-216	682.0	COG0409@1|root,COG0409@2|Bacteria,1MU1F@1224|Proteobacteria,2TSE4@28211|Alphaproteobacteria,3JVZM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the HypD family	hypD	-	-	ko:K04654	-	-	-	-	ko00000	-	-	-	HypD
DYD3_k127_6550889_6	1126627.BAWE01000006_gene6465	1.685e-105	346.0	COG0279@1|root,COG0279@2|Bacteria,1NVIE@1224|Proteobacteria,2U8QT@28211|Alphaproteobacteria,3JY4C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate	lpcA	-	5.3.1.28	ko:K03271	ko00540,ko01100,map00540,map01100	M00064	R05645,R09768,R09769	RC00434	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	SIS_2
DYD3_k127_6550889_7	395965.Msil_3752	1.625e-43	160.0	COG0298@1|root,COG0298@2|Bacteria,1N76Y@1224|Proteobacteria,2UFCQ@28211|Alphaproteobacteria,3NBJE@45404|Beijerinckiaceae	28211|Alphaproteobacteria	O	HupF/HypC family	-	-	-	ko:K04653	-	-	-	-	ko00000	-	-	-	HupF_HypC
DYD3_k127_6550889_0	1230476.C207_04839	0.0	1097.0	COG0068@1|root,COG0068@2|Bacteria,1MVP8@1224|Proteobacteria,2TR2N@28211|Alphaproteobacteria,3JW79@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide	hypF	-	-	ko:K04656	-	-	-	-	ko00000	-	-	-	Acylphosphatase,Sua5_yciO_yrdC,zf-HYPF
DYD3_k127_6550889_2	319003.Bra1253DRAFT_02583	1.57e-159	511.0	COG3391@1|root,COG3391@2|Bacteria,1MWMT@1224|Proteobacteria,2TVCK@28211|Alphaproteobacteria,3JXM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NHL repeat	-	-	-	-	-	-	-	-	-	-	-	-	NHL
DYD3_k127_6550889_5	319003.Bra1253DRAFT_02584	1.49e-128	418.0	COG0694@1|root,COG2146@1|root,COG0694@2|Bacteria,COG2146@2|Bacteria,1PEZF@1224|Proteobacteria,2U24J@28211|Alphaproteobacteria,3JU84@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OP	Rieske-like [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	NifU,Rieske
DYD3_k127_6550889_9	1230476.C207_04842	2.029e-21	102.0	2DSNF@1|root,33GT1@2|Bacteria,1ND3Q@1224|Proteobacteria,2UF78@28211|Alphaproteobacteria,3K1M2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6550889_10	536019.Mesop_5524	3.476e-13	71.0	2DS5E@1|root,33EKW@2|Bacteria,1NHPD@1224|Proteobacteria,2UM38@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6550889_4	1230476.C207_04844	2.614e-146	470.0	COG0457@1|root,COG0457@2|Bacteria,1R4NF@1224|Proteobacteria,2TREU@28211|Alphaproteobacteria,3JXHQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_10,cNMP_binding
DYD3_k127_6550889_11	1230476.C207_04845	3.364e-05	46.0	2EBTZ@1|root,335TH@2|Bacteria,1NCZB@1224|Proteobacteria,2UE4N@28211|Alphaproteobacteria,3K1VJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6551575_3	311403.Arad_7575	2.197e-98	325.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TTKG@28211|Alphaproteobacteria,4BAPT@82115|Rhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein	ompR	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_6551575_4	1041139.KB902579_gene4613	6.998e-15	81.0	2E8Z2@1|root,32IWU@2|Bacteria,1Q8EY@1224|Proteobacteria,2VEMS@28211|Alphaproteobacteria,4BEBT@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6551575_1	59538.XP_005978148.1	5.762e-122	400.0	COG0549@1|root,2S00U@2759|Eukaryota,3AMAH@33154|Opisthokonta,3C0D9@33208|Metazoa,3DH2A@33213|Bilateria	33208|Metazoa	E	Amino acid kinase family	-	-	-	-	-	-	-	-	-	-	-	-	AA_kinase
DYD3_k127_6551575_0	1040983.AXAE01000037_gene2586	3.399e-170	539.0	COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,2TUZN@28211|Alphaproteobacteria,43IG1@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	-	-	2.1.3.3,2.1.3.6	ko:K00611,ko:K13252	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	M00029,M00844	R01398	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	OTCace,OTCace_N
DYD3_k127_6551575_2	1082933.MEA186_07924	3.699e-117	379.0	COG2235@1|root,COG2235@2|Bacteria,1NCGV@1224|Proteobacteria,2TU0Z@28211|Alphaproteobacteria,43GUQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Arginine	arcA	-	3.5.3.6	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	-	R00552	RC00177	ko00000,ko00001,ko01000	-	-	-	Amidinotransf
DYD3_k127_6552265_2	1207063.P24_05454	1.687e-46	173.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2TQZE@28211|Alphaproteobacteria,2JRC1@204441|Rhodospirillales	204441|Rhodospirillales	M	Peptidase family M23	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_6552265_3	1279038.KB907337_gene506	1.749e-23	106.0	COG1664@1|root,COG1664@2|Bacteria,1MZN0@1224|Proteobacteria,2U5DW@28211|Alphaproteobacteria,2JT69@204441|Rhodospirillales	204441|Rhodospirillales	M	Integral membrane protein CcmA involved in cell shape determination	-	-	-	-	-	-	-	-	-	-	-	-	Bactofilin
DYD3_k127_6552265_1	1430440.MGMSRv2_0803	1.8e-159	509.0	COG1186@1|root,COG1186@2|Bacteria,1MUAW@1224|Proteobacteria,2TR9V@28211|Alphaproteobacteria,2JQDU@204441|Rhodospirillales	204441|Rhodospirillales	J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA	prfB	-	-	ko:K02836	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD3_k127_6552265_0	1121033.AUCF01000001_gene2048	5.461e-268	845.0	COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,2USBB@28211|Alphaproteobacteria,2JQFN@204441|Rhodospirillales	204441|Rhodospirillales	M	penicillin-binding protein 1A	mrcA	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	PCB_OB,Transgly,Transpeptidase
DYD3_k127_6563724_5	1123060.JONP01000006_gene4911	3.505e-13	70.0	COG2050@1|root,COG2050@2|Bacteria,1NA0B@1224|Proteobacteria,2UI6H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	PFAM thioesterase superfamily	MA20_21000	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_6563724_4	1530186.JQEY01000017_gene264	2.686e-25	109.0	COG5606@1|root,COG5606@2|Bacteria,1NA3S@1224|Proteobacteria,2UF4K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_37
DYD3_k127_6563724_3	1370122.JHXQ01000005_gene3378	7.811e-74	255.0	COG0546@1|root,COG0546@2|Bacteria,1RB0Z@1224|Proteobacteria,2U5DF@28211|Alphaproteobacteria,4B735@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	HAD-hyrolase-like	gph	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
DYD3_k127_6563724_2	187272.Mlg_0619	2.494e-80	284.0	COG4949@1|root,COG4949@2|Bacteria,1MVI2@1224|Proteobacteria,1RR20@1236|Gammaproteobacteria,1WW7X@135613|Chromatiales	135613|Chromatiales	S	Protein of unknown function (DUF3422)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3422
DYD3_k127_6563724_0	1298858.AUEL01000016_gene2513	1.852e-120	407.0	COG4148@1|root,COG4148@2|Bacteria,1MU8K@1224|Proteobacteria,2TR1Z@28211|Alphaproteobacteria,43H7X@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system	modC	-	3.6.3.29	ko:K02017	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.8	-	-	ABC_tran,TOBE
DYD3_k127_6563724_1	347834.RHE_CH04072	2.887e-98	325.0	COG4149@1|root,COG4149@2|Bacteria,1MUXR@1224|Proteobacteria,2TSYJ@28211|Alphaproteobacteria,4B9HM@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	ABC-type molybdate transport system, permease component	modB	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944	-	ko:K02018	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.8	-	-	BPD_transp_1
DYD3_k127_6565040_7	1122132.AQYH01000005_gene531	2.426e-44	185.0	COG0180@1|root,COG0180@2|Bacteria,1MV4T@1224|Proteobacteria,2TQZX@28211|Alphaproteobacteria,4B955@82115|Rhizobiaceae	28211|Alphaproteobacteria	J	Tryptophanyl-tRNA synthetase	trpS	-	6.1.1.2	ko:K01867	ko00970,map00970	M00359,M00360	R03664	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1b
DYD3_k127_6565040_1	1207063.P24_02436	8.731e-147	481.0	COG0728@1|root,COG0728@2|Bacteria,1MUH0@1224|Proteobacteria,2TS44@28211|Alphaproteobacteria,2JQBH@204441|Rhodospirillales	204441|Rhodospirillales	S	Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane	murJ	-	-	ko:K03980	-	-	-	-	ko00000,ko01011,ko02000	2.A.66.4	-	-	MVIN
DYD3_k127_6565040_0	1121033.AUCF01000003_gene3430	0.0	1092.0	COG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,2TSV0@28211|Alphaproteobacteria,2JPGY@204441|Rhodospirillales	204441|Rhodospirillales	O	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen	glnD	GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141	2.7.7.59	ko:K00990	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	-	-	-	ACT,GlnD_UR_UTase,HD,NTP_transf_2
DYD3_k127_6565040_5	1205680.CAKO01000030_gene4837	1.127e-77	267.0	COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,2TS1B@28211|Alphaproteobacteria,2JTGR@204441|Rhodospirillales	204441|Rhodospirillales	O	Glutathione S-transferase, N-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_3
DYD3_k127_6565040_2	1038859.AXAU01000005_gene5246	4.345e-120	392.0	COG0583@1|root,COG0583@2|Bacteria,1PX1B@1224|Proteobacteria,2TUE7@28211|Alphaproteobacteria,3JV4U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_6565040_8	1041146.ATZB01000011_gene977	4.307e-14	80.0	COG1359@1|root,COG1359@2|Bacteria,1NGPW@1224|Proteobacteria,2VGJA@28211|Alphaproteobacteria,4BNKB@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_6565040_4	483219.LILAB_15330	2.2e-108	357.0	COG4221@1|root,COG4221@2|Bacteria,1MUF8@1224|Proteobacteria,42KZX@68525|delta/epsilon subdivisions,2X9TM@28221|Deltaproteobacteria,2YUKR@29|Myxococcales	28221|Deltaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_6565040_3	1502851.FG93_04699	1.428e-113	374.0	COG2207@1|root,COG2207@2|Bacteria,1MUEM@1224|Proteobacteria,2TTT9@28211|Alphaproteobacteria,3K70X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-type transcriptional regulator N-terminus	-	-	-	-	-	-	-	-	-	-	-	-	AraC_N,HTH_18
DYD3_k127_6565040_6	1245469.S58_24640	4.684e-67	233.0	COG0645@1|root,COG0645@2|Bacteria,1RDGW@1224|Proteobacteria,2U776@28211|Alphaproteobacteria,3K11B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_33
DYD3_k127_6565040_10	1410620.SHLA_64c000210	0.0002986	51.0	28SK3@1|root,2ZEWE@2|Bacteria,1RBEF@1224|Proteobacteria,2U6PD@28211|Alphaproteobacteria,4B9XE@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6565040_9	78245.Xaut_0035	6.121e-11	64.0	COG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,2TQRR@28211|Alphaproteobacteria,3EYUD@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	mutS	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03555	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
DYD3_k127_6565607_4	1476583.DEIPH_ctg020orf0013	1.034e-12	74.0	COG1960@1|root,COG1960@2|Bacteria	2|Bacteria	I	acyl-CoA dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_N
DYD3_k127_6565607_3	1282361.ABAC402_14195	2.935e-35	140.0	COG0789@1|root,COG0789@2|Bacteria,1RITY@1224|Proteobacteria,2U98M@28211|Alphaproteobacteria,2KGIY@204458|Caulobacterales	204458|Caulobacterales	K	Regulator	-	-	-	-	-	-	-	-	-	-	-	-	MerR,MerR-DNA-bind,MerR_1
DYD3_k127_6565607_2	1449076.JOOE01000001_gene2681	1.796e-44	166.0	COG4323@1|root,COG4323@2|Bacteria,1N16T@1224|Proteobacteria,2U9EX@28211|Alphaproteobacteria,2K64Z@204457|Sphingomonadales	204457|Sphingomonadales	S	membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF962
DYD3_k127_6565607_0	1110697.NCAST_05_03640	2.616e-120	393.0	28KZT@1|root,2ZAEZ@2|Bacteria,2HBJ7@201174|Actinobacteria,4FVEI@85025|Nocardiaceae	201174|Actinobacteria	S	3-oxo-5-alpha-steroid 4-dehydrogenase	-	-	1.3.1.22	ko:K12343	ko00140,map00140	-	R02208,R02497,R08954,R10242	RC00145	ko00000,ko00001,ko01000	-	-	-	Steroid_dh
DYD3_k127_6565607_5	1254432.SCE1572_49835	4.156e-05	46.0	COG0065@1|root,COG0066@1|root,COG0065@2|Bacteria,COG0066@2|Bacteria,1MVYR@1224|Proteobacteria,42M5D@68525|delta/epsilon subdivisions,2WJ59@28221|Deltaproteobacteria,2YX5D@29|Myxococcales	28221|Deltaproteobacteria	E	Aconitase C-terminal domain	-	-	4.2.1.33,4.2.1.35	ko:K01703	ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170	RC00497,RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase,Aconitase_C
DYD3_k127_6573078_3	1502851.FG93_01994	3.904e-49	182.0	COG0633@1|root,COG2114@1|root,COG0633@2|Bacteria,COG2114@2|Bacteria,1N5XC@1224|Proteobacteria,2TRGX@28211|Alphaproteobacteria,3JQU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CT	Adenylyl- / guanylyl cyclase, catalytic domain	cyaA	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2,Guanylate_cyc
DYD3_k127_6573078_5	991905.SL003B_2680	1.205e-27	117.0	COG0664@1|root,COG0664@2|Bacteria,1RI6M@1224|Proteobacteria,2U9WH@28211|Alphaproteobacteria,4BQJM@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Cyclic nucleotide-monophosphate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	cNMP_binding
DYD3_k127_6573078_0	1510531.JQJJ01000010_gene2521	6.987e-231	745.0	COG1132@1|root,COG1132@2|Bacteria,1MWTY@1224|Proteobacteria,2TRSY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	ABC-type multidrug transport system ATPase and permease	-	-	-	ko:K02021	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21	-	-	ABC_membrane,ABC_tran,cNMP_binding
DYD3_k127_6573078_4	1454004.AW11_00461	8.093e-46	176.0	COG0500@1|root,COG0500@2|Bacteria,1N1Q5@1224|Proteobacteria,2W3DD@28216|Betaproteobacteria	28216|Betaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD3_k127_6573078_1	438753.AZC_1794	1.19e-142	471.0	COG2233@1|root,COG2233@2|Bacteria,1MUN9@1224|Proteobacteria,2TT1S@28211|Alphaproteobacteria,3EXZM@335928|Xanthobacteraceae	28211|Alphaproteobacteria	F	PFAM Xanthine uracil vitamin C permease	-	-	-	-	-	-	-	-	-	-	-	-	Xan_ur_permease
DYD3_k127_6573078_2	438753.AZC_1793	3.93e-92	308.0	COG0288@1|root,COG0288@2|Bacteria,1NGFN@1224|Proteobacteria,2TRPD@28211|Alphaproteobacteria,3EZD0@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	Reversible hydration of carbon dioxide	-	-	4.2.1.1	ko:K01673	ko00910,map00910	-	R00132,R10092	RC02807	ko00000,ko00001,ko01000	-	-	-	Pro_CA
DYD3_k127_6573078_6	1121033.AUCF01000050_gene531	1.218e-15	80.0	COG2233@1|root,COG2233@2|Bacteria,1MUN9@1224|Proteobacteria,2TT1S@28211|Alphaproteobacteria,2JW7S@204441|Rhodospirillales	204441|Rhodospirillales	F	Permease family	-	-	-	-	-	-	-	-	-	-	-	-	Xan_ur_permease
DYD3_k127_6578245_1	1316936.K678_15836	2.58e-107	362.0	COG5309@1|root,COG5309@2|Bacteria,1MWJJ@1224|Proteobacteria,2U19Q@28211|Alphaproteobacteria,2JQVV@204441|Rhodospirillales	204441|Rhodospirillales	G	beta (1-6) glucans synthase	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_17
DYD3_k127_6578245_0	1304877.KI519399_gene4094	1.575e-191	612.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JS0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_16355	-	6.2.1.3	ko:K00666,ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
DYD3_k127_6578245_2	509190.Cseg_3325	1.973e-15	79.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,2KG0T@204458|Caulobacterales	204458|Caulobacterales	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
DYD3_k127_6591824_4	1446473.JHWH01000002_gene1407	4.239e-28	117.0	COG0285@1|root,COG0285@2|Bacteria,1MVCH@1224|Proteobacteria,2TR64@28211|Alphaproteobacteria,2PU6Z@265|Paracoccus	28211|Alphaproteobacteria	H	Belongs to the folylpolyglutamate synthase family	folC	-	6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	Mur_ligase_M
DYD3_k127_6591824_5	1415780.JPOG01000001_gene1562	1.074e-24	113.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6591824_6	443152.MDG893_03735	9.966e-21	100.0	COG2867@1|root,COG2867@2|Bacteria,1RI5E@1224|Proteobacteria,1S8NQ@1236|Gammaproteobacteria,46B39@72275|Alteromonadaceae	1236|Gammaproteobacteria	I	negative regulation of translational initiation	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
DYD3_k127_6591824_0	1434929.X946_1436	1.111e-177	574.0	COG0300@1|root,COG0596@1|root,COG0300@2|Bacteria,COG0596@2|Bacteria,1R4PH@1224|Proteobacteria,2VPXG@28216|Betaproteobacteria,1K3X9@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Alpha beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,adh_short
DYD3_k127_6591824_1	342113.DM82_5352	2.787e-67	247.0	COG3687@1|root,COG3687@2|Bacteria,1R3RM@1224|Proteobacteria,2W1RU@28216|Betaproteobacteria,1K6F7@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Predicted metal-dependent hydrolase	-	-	-	ko:K07044	-	-	-	-	ko00000	-	-	-	Metal_hydrol
DYD3_k127_6591824_2	1279038.KB907338_gene967	3.241e-41	160.0	COG1280@1|root,COG1280@2|Bacteria,1RHI1@1224|Proteobacteria,2UANC@28211|Alphaproteobacteria,2JTRI@204441|Rhodospirillales	204441|Rhodospirillales	E	LysE type translocator	-	-	-	-	-	-	-	-	-	-	-	-	LysE
DYD3_k127_6591824_3	326297.Sama_1174	1.201e-30	124.0	COG0174@1|root,COG0174@2|Bacteria,1MU6V@1224|Proteobacteria,1RPNZ@1236|Gammaproteobacteria,2QAY9@267890|Shewanellaceae	1236|Gammaproteobacteria	E	PFAM glutamine synthetase catalytic region	-	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_6599232_8	1207063.P24_06372	2.202e-59	209.0	COG1692@1|root,COG1692@2|Bacteria,1MW12@1224|Proteobacteria,2TS4S@28211|Alphaproteobacteria,2JQ2H@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein conserved in bacteria	-	-	-	ko:K09769	-	-	-	-	ko00000	-	-	-	YmdB
DYD3_k127_6599232_9	1207063.P24_06367	1.517e-40	159.0	COG0212@1|root,COG0212@2|Bacteria,1MZG0@1224|Proteobacteria,2UBY4@28211|Alphaproteobacteria,2JTJ1@204441|Rhodospirillales	204441|Rhodospirillales	H	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	-	-	6.3.3.2	ko:K01934	ko00670,ko01100,map00670,map01100	-	R02301	RC00183	ko00000,ko00001,ko01000	-	-	-	5-FTHF_cyc-lig
DYD3_k127_6599232_11	1267005.KB911262_gene3213	2.419e-35	142.0	2DNEG@1|root,32X40@2|Bacteria,1R7P4@1224|Proteobacteria,2UCRV@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	LTXXQ motif family protein	-	-	-	-	-	-	-	-	-	-	-	-	LTXXQ
DYD3_k127_6599232_12	991905.SL003B_2802	4.183e-31	130.0	COG2353@1|root,COG2353@2|Bacteria,1R9XD@1224|Proteobacteria,2TVD3@28211|Alphaproteobacteria,4BQFC@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	YceI-like domain	-	-	-	-	-	-	-	-	-	-	-	-	YceI
DYD3_k127_6599232_13	426117.M446_2358	1.781e-24	110.0	COG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2UBYU@28211|Alphaproteobacteria,1JZ6J@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	Cytochrome b/b6/petB	-	-	-	ko:K12262	-	-	-	-	ko00000	-	-	-	Ni_hydr_CYTB
DYD3_k127_6599232_14	1230476.C207_02673	1.979e-08	65.0	COG3027@1|root,COG3027@2|Bacteria,1N8NY@1224|Proteobacteria,2UCRX@28211|Alphaproteobacteria,3JZUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division	MA20_17980	-	-	ko:K09888	-	-	-	-	ko00000,ko03036	-	-	-	ZapA
DYD3_k127_6599232_2	378806.STAUR_4408	5.177e-144	464.0	COG2141@1|root,COG2141@2|Bacteria,1MVF0@1224|Proteobacteria,42P8U@68525|delta/epsilon subdivisions,2WTQE@28221|Deltaproteobacteria,2YTWU@29|Myxococcales	28221|Deltaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
DYD3_k127_6599232_10	395492.Rleg2_4306	2.847e-39	147.0	COG4453@1|root,COG4453@2|Bacteria,1N7V4@1224|Proteobacteria,2UZKA@28211|Alphaproteobacteria,4BFMI@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1778)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1778
DYD3_k127_6599232_6	1116369.KB890024_gene1057	2.994e-84	286.0	COG0454@1|root,COG0454@2|Bacteria,1QUS5@1224|Proteobacteria,2U5P4@28211|Alphaproteobacteria,43JX5@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	-acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
DYD3_k127_6599232_3	402881.Plav_2526	7.043e-112	364.0	COG0500@1|root,COG2226@2|Bacteria,1RANW@1224|Proteobacteria,2U66N@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
DYD3_k127_6599232_5	395965.Msil_3884	2.554e-101	335.0	COG4221@1|root,COG4221@2|Bacteria,1MWXS@1224|Proteobacteria,2TQYY@28211|Alphaproteobacteria,3NB18@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_32450	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_6599232_0	420324.KI911961_gene1829	1.1e-153	496.0	COG4671@1|root,COG4671@2|Bacteria,1N1PQ@1224|Proteobacteria,2TSTV@28211|Alphaproteobacteria,1JSIN@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	glycosyl transferase	redA	-	-	-	-	-	-	-	-	-	-	-	Glyco_tran_28_C
DYD3_k127_6599232_1	1096546.WYO_2987	1.088e-150	501.0	COG0438@1|root,COG0438@2|Bacteria,1MVKK@1224|Proteobacteria,2TUFG@28211|Alphaproteobacteria,1JRDS@119045|Methylobacteriaceae	28211|Alphaproteobacteria	M	PFAM glycosyl transferase group 1	redB	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_1
DYD3_k127_6599232_4	1336243.JAEA01000015_gene1197	7.345e-103	359.0	COG0438@1|root,COG0438@2|Bacteria,1R4Q9@1224|Proteobacteria,2TUGJ@28211|Alphaproteobacteria,1JTBK@119045|Methylobacteriaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glycos_transf_1
DYD3_k127_6599232_7	426117.M446_6473	1.033e-62	239.0	COG4671@1|root,COG4671@2|Bacteria,1NE6T@1224|Proteobacteria,2U08G@28211|Alphaproteobacteria,1JS6E@119045|Methylobacteriaceae	28211|Alphaproteobacteria	M	Glycosyltransferase family 28 C-terminal domain	redA	-	-	-	-	-	-	-	-	-	-	-	Glyco_tran_28_C
DYD3_k127_6606857_5	1430440.MGMSRv2_3262	1.152e-74	255.0	COG4181@1|root,COG4181@2|Bacteria,1MXG9@1224|Proteobacteria,2TS0J@28211|Alphaproteobacteria,2JPTC@204441|Rhodospirillales	204441|Rhodospirillales	Q	ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_6606857_6	402881.Plav_0632	4.777e-26	115.0	COG3788@1|root,COG3788@2|Bacteria	2|Bacteria	S	relative of glutathione S-transferase, MAPEG superfamily	-	-	-	ko:K07136	-	-	-	-	ko00000	-	-	-	MAPEG
DYD3_k127_6606857_0	414684.RC1_2026	2.52e-197	627.0	COG0415@1|root,COG0415@2|Bacteria,1MV9Y@1224|Proteobacteria,2TSDP@28211|Alphaproteobacteria,2JQ32@204441|Rhodospirillales	204441|Rhodospirillales	L	Belongs to the DNA photolyase family	phrB	-	4.1.99.3	ko:K01669	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_photolyase,FAD_binding_7
DYD3_k127_6606857_1	991905.SL003B_2019	4.209e-153	496.0	COG2907@1|root,COG2907@2|Bacteria,1MV4Z@1224|Proteobacteria,2TQUH@28211|Alphaproteobacteria,4BPH7@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	NAD FAD-binding protein	-	-	-	ko:K06954	-	-	-	-	ko00000	-	-	-	Amino_oxidase,NAD_binding_8
DYD3_k127_6606857_4	1207063.P24_05334	1.302e-79	275.0	COG3496@1|root,COG3496@2|Bacteria,1RC56@1224|Proteobacteria,2TUX0@28211|Alphaproteobacteria,2JRSA@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1365)	-	-	-	ko:K09701	-	-	-	-	ko00000	-	-	-	DUF1365
DYD3_k127_6606857_2	1101190.ARWB01000001_gene935	8.095e-143	465.0	COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,2TR8K@28211|Alphaproteobacteria,36X9V@31993|Methylocystaceae	28211|Alphaproteobacteria	M	Mycolic acid cyclopropane synthetase	cfa	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0008825,GO:0009987,GO:0016740,GO:0016741,GO:0030258,GO:0032259,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	CMAS
DYD3_k127_6606857_3	331869.BAL199_02454	8.585e-107	362.0	COG2211@1|root,COG2211@2|Bacteria,1MVUM@1224|Proteobacteria,2U1DI@28211|Alphaproteobacteria,4BS5X@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	G	MFS/sugar transport protein	-	-	-	ko:K03292	-	-	-	-	ko00000	2.A.2	-	-	MFS_2
DYD3_k127_6619656_0	1197906.CAJQ02000052_gene4504	4.712e-100	332.0	COG1028@1|root,COG1028@2|Bacteria,1MWGC@1224|Proteobacteria,2TSNX@28211|Alphaproteobacteria,3JQUD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Dehydrogenase	MA20_18560	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_6619656_1	215803.DB30_6366	2.287e-49	188.0	COG0583@1|root,COG0583@2|Bacteria,1MWVB@1224|Proteobacteria,42U9X@68525|delta/epsilon subdivisions,2WQN5@28221|Deltaproteobacteria,2YXWV@29|Myxococcales	28221|Deltaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_6626876_0	1297865.APJD01000026_gene2567	1.087e-116	385.0	COG2159@1|root,COG2159@2|Bacteria,1R5PG@1224|Proteobacteria,2U2G9@28211|Alphaproteobacteria,3JWBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	4.1.1.45	ko:K03392	ko00380,ko01100,map00380,map01100	M00038	R04323	RC00779	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_2
DYD3_k127_6626876_2	1415779.JOMH01000001_gene1437	9.131e-07	57.0	2EH8J@1|root,33B0E@2|Bacteria,1P381@1224|Proteobacteria,1SSD8@1236|Gammaproteobacteria,1XB8W@135614|Xanthomonadales	135614|Xanthomonadales	S	Prokaryotic Cytochrome C oxidase subunit IV	-	-	-	-	-	-	-	-	-	-	-	-	COX4_pro
DYD3_k127_6626876_1	158500.BV97_01863	4.087e-45	169.0	COG1845@1|root,COG1845@2|Bacteria,1RG3S@1224|Proteobacteria,2U15W@28211|Alphaproteobacteria,2K9IT@204457|Sphingomonadales	204457|Sphingomonadales	C	Cytochrome c oxidase subunit III	-	-	-	ko:K02164	-	-	R00294	RC02794	ko00000	3.D.4.10	-	-	COX3
DYD3_k127_6633941_2	765698.Mesci_2880	4.351e-29	124.0	COG1079@1|root,COG1079@2|Bacteria,1MVDQ@1224|Proteobacteria,2TSGJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
DYD3_k127_6633941_1	765698.Mesci_2881	2.852e-101	340.0	COG4603@1|root,COG4603@2|Bacteria,1MX6V@1224|Proteobacteria,2TUGD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
DYD3_k127_6633941_0	1122925.KB895386_gene2905	2.101e-104	357.0	COG3845@1|root,COG3845@2|Bacteria,1UYQA@1239|Firmicutes,4HVSH@91061|Bacilli,26RES@186822|Paenibacillaceae	91061|Bacilli	S	ABC transporter	-	-	3.6.3.17	ko:K02056	-	M00221	-	-	ko00000,ko00002,ko01000,ko02000	3.A.1.2	-	-	ABC_tran
DYD3_k127_6635966_2	1038859.AXAU01000003_gene6142	2.064e-14	73.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,3JW5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis protein cobW C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	CobW_C,cobW
DYD3_k127_6635966_0	1205680.CAKO01000040_gene856	2.826e-66	241.0	COG2319@1|root,COG2319@2|Bacteria,1MV7S@1224|Proteobacteria,2TTNW@28211|Alphaproteobacteria,2JS73@204441|Rhodospirillales	204441|Rhodospirillales	S	WD40 repeats	-	-	-	-	-	-	-	-	-	-	-	-	ANAPC4_WD40,WD40
DYD3_k127_6635966_1	450851.PHZ_c1787	2.307e-49	176.0	COG0346@1|root,COG0346@2|Bacteria,1RCYU@1224|Proteobacteria,2U728@28211|Alphaproteobacteria,2KGKT@204458|Caulobacterales	204458|Caulobacterales	E	PFAM Glyoxalase bleomycin resistance protein dioxygenase	-	-	5.1.99.1	ko:K05606	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	M00373,M00375,M00376,M00741	R02765,R09979	RC00780,RC02739	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase_4
DYD3_k127_6641767_0	1121033.AUCF01000003_gene3275	1.412e-136	447.0	COG0687@1|root,COG0687@2|Bacteria,1MU12@1224|Proteobacteria,2U060@28211|Alphaproteobacteria,2JRE6@204441|Rhodospirillales	204441|Rhodospirillales	E	Bacterial extracellular solute-binding protein	-	-	-	ko:K11069	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	SBP_bac_8,TAT_signal
DYD3_k127_6641767_1	1396418.BATQ01000016_gene4273	8.322e-46	179.0	COG0697@1|root,COG0697@2|Bacteria,46T3I@74201|Verrucomicrobia,2IVMP@203494|Verrucomicrobiae	203494|Verrucomicrobiae	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_6646793_17	266779.Meso_2625	8.31e-19	90.0	COG1173@1|root,COG1173@2|Bacteria,1MW3R@1224|Proteobacteria,2TUCW@28211|Alphaproteobacteria,43JQA@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EP	PFAM binding-protein-dependent transport systems inner membrane component	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
DYD3_k127_6646793_9	1287116.X734_32545	2.247e-107	357.0	COG0601@1|root,COG0601@2|Bacteria,1PX6T@1224|Proteobacteria,2TUFH@28211|Alphaproteobacteria,43JWD@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	EP	PFAM binding-protein-dependent transport systems inner membrane component	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_6646793_14	883080.HMPREF9697_02201	1.969e-69	248.0	COG0111@1|root,COG0111@2|Bacteria,1MW1U@1224|Proteobacteria,2TSUU@28211|Alphaproteobacteria,3JXSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_6646793_8	1380394.JADL01000001_gene2800	5.68e-122	404.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,2TVNW@28211|Alphaproteobacteria,2JWN1@204441|Rhodospirillales	204441|Rhodospirillales	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	-	-	-	-	-	-	-	-	-	-	Rieske,Ring_hydroxyl_A
DYD3_k127_6646793_1	272943.RSP_3036	1.562e-219	701.0	COG2936@1|root,COG2936@2|Bacteria,1MVA8@1224|Proteobacteria,2TU0R@28211|Alphaproteobacteria,1FCJ1@1060|Rhodobacter	28211|Alphaproteobacteria	S	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain	-	-	-	ko:K06978	-	-	-	-	ko00000	-	-	-	PepX_C,Peptidase_S15
DYD3_k127_6646793_12	118168.MC7420_253	5.02e-76	267.0	COG5285@1|root,COG5285@2|Bacteria,1G5BN@1117|Cyanobacteria,1HARI@1150|Oscillatoriales	1117|Cyanobacteria	C	COG5285 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	-	-	1.14.11.46	ko:K21195	ko00440,map00440	-	R10724	RC01107	ko00000,ko00001,ko01000	-	-	-	PhyH
DYD3_k127_6646793_3	1144342.PMI40_03073	1.266e-169	552.0	COG2368@1|root,COG2368@2|Bacteria,1PEQG@1224|Proteobacteria,2VKCH@28216|Betaproteobacteria	28216|Betaproteobacteria	Q	4-hydroxyphenylacetate	-	-	1.14.14.9,4.2.1.120,5.3.3.3	ko:K00483,ko:K14534	ko00350,ko00650,ko00720,ko01100,ko01120,ko01200,ko01220,map00350,map00650,map00720,map01100,map01120,map01200,map01220	M00374,M00375	R02698,R03031,R03299,R10782	RC00046,RC01857,RC03277	ko00000,ko00001,ko00002,ko01000	-	-	-	HpaB,HpaB_N
DYD3_k127_6646793_16	1144342.PMI40_03065	1.193e-31	134.0	COG1802@1|root,COG1802@2|Bacteria,1NWSI@1224|Proteobacteria,2VMNY@28216|Betaproteobacteria	28216|Betaproteobacteria	K	GntR family transcriptional regulator	-	-	-	ko:K11475	-	-	-	-	ko00000,ko03000	-	-	-	FCD,GntR
DYD3_k127_6646793_15	1054213.HMPREF9946_04237	9.273e-50	184.0	COG3342@1|root,COG3342@2|Bacteria,1MWQT@1224|Proteobacteria,2TRJZ@28211|Alphaproteobacteria,2JS5D@204441|Rhodospirillales	204441|Rhodospirillales	S	Family of unknown function (DUF1028)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1028
DYD3_k127_6646793_11	1380394.JADL01000016_gene398	4.468e-84	286.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,2JRJV@204441|Rhodospirillales	204441|Rhodospirillales	G	COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	-	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
DYD3_k127_6646793_2	1079460.ATTQ01000007_gene3902	1.109e-186	587.0	COG2345@1|root,COG2345@2|Bacteria,1QW55@1224|Proteobacteria,2TWMX@28211|Alphaproteobacteria,4BDT7@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Dimerisation domain	-	-	-	-	-	-	-	-	-	-	-	-	Dimerisation2,Methyltransf_2
DYD3_k127_6646793_10	1331060.RLDS_04135	3.434e-106	357.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TUWC@28211|Alphaproteobacteria,2K30E@204457|Sphingomonadales	204457|Sphingomonadales	Q	hydratase	-	-	4.2.1.80	ko:K02554	ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R02601,R04781	RC00750,RC01213	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_6646793_0	1123257.AUFV01000003_gene1113	6.027e-261	819.0	COG0654@1|root,COG0654@2|Bacteria,1MX9R@1224|Proteobacteria,1SYDP@1236|Gammaproteobacteria,1XCUU@135614|Xanthomonadales	135614|Xanthomonadales	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
DYD3_k127_6646793_7	1123257.AUFV01000003_gene1112	3.201e-138	446.0	COG0346@1|root,COG0346@2|Bacteria,1P5FR@1224|Proteobacteria,1RZAA@1236|Gammaproteobacteria,1X9AT@135614|Xanthomonadales	135614|Xanthomonadales	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_6646793_5	1123257.AUFV01000003_gene1111	1.6e-139	448.0	COG0596@1|root,COG0596@2|Bacteria,1MVTG@1224|Proteobacteria,1T1TK@1236|Gammaproteobacteria,1XCD6@135614|Xanthomonadales	135614|Xanthomonadales	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_6646793_13	1123257.AUFV01000003_gene1110	4.624e-71	246.0	COG1309@1|root,COG1309@2|Bacteria,1RDCH@1224|Proteobacteria,1S3R0@1236|Gammaproteobacteria,1XAAY@135614|Xanthomonadales	135614|Xanthomonadales	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6646793_6	1217713.F993_01337	8.524e-139	450.0	COG2159@1|root,COG2159@2|Bacteria,1MXI7@1224|Proteobacteria,1T0VK@1236|Gammaproteobacteria,3NPWN@468|Moraxellaceae	1236|Gammaproteobacteria	S	Amidohydrolase	-	-	4.1.1.46,4.1.1.52	ko:K07045,ko:K14333,ko:K22213	ko00362,ko00627,ko01120,map00362,map00627,map01120	-	R00821	RC00390	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
DYD3_k127_6646793_4	292.DM42_5701	1.885e-156	503.0	COG2175@1|root,COG2175@2|Bacteria,1MX7P@1224|Proteobacteria,2WB4H@28216|Betaproteobacteria,1K56J@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	Protein of unknown function (DUF971)	-	-	1.14.11.1	ko:K00471	ko00310,map00310	-	R02397	RC00709	ko00000,ko00001,ko01000	-	-	-	DUF971,TauD
DYD3_k127_6652658_6	1177154.Y5S_02145	3.731e-22	103.0	COG1309@1|root,COG1309@2|Bacteria,1R8KS@1224|Proteobacteria,1S9ER@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6652658_2	1123060.JONP01000020_gene3218	4.331e-90	307.0	COG0253@1|root,COG0253@2|Bacteria,1MWDH@1224|Proteobacteria,2TUF2@28211|Alphaproteobacteria,2JPZS@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	dapF	-	5.1.1.7	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00527	R02735	RC00302	ko00000,ko00001,ko00002,ko01000	-	-	-	DAP_epimerase
DYD3_k127_6652658_0	1121033.AUCF01000008_gene5716	1.086e-158	510.0	COG0621@1|root,COG0621@2|Bacteria,1MUCS@1224|Proteobacteria,2TRYD@28211|Alphaproteobacteria,2JPRM@204441|Rhodospirillales	204441|Rhodospirillales	J	Uncharacterized protein family UPF0004	-	-	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
DYD3_k127_6652658_1	1267005.KB911257_gene1033	2.733e-120	407.0	COG0552@1|root,COG0552@2|Bacteria,1MUDU@1224|Proteobacteria,2TS0M@28211|Alphaproteobacteria,3N6ED@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	ftsY	-	-	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2,3.A.5.7	-	-	SRP54,SRP54_N
DYD3_k127_6652658_4	1120956.JHZK01000005_gene2264	4.457e-73	253.0	COG2917@1|root,COG2917@2|Bacteria,1NWIZ@1224|Proteobacteria,2U74X@28211|Alphaproteobacteria,1JNZI@119043|Rhodobiaceae	28211|Alphaproteobacteria	D	probably involved in intracellular septation	ispZ	-	-	ko:K06190	-	-	-	-	ko00000	-	-	-	IspA
DYD3_k127_6652658_5	1054213.HMPREF9946_03475	4.466e-57	207.0	COG1938@1|root,COG1938@2|Bacteria,1NY9I@1224|Proteobacteria,2USUK@28211|Alphaproteobacteria,2JWD5@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1194)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1194
DYD3_k127_6652658_3	426117.M446_2092	8.701e-84	284.0	COG4222@1|root,COG4625@1|root,COG4222@2|Bacteria,COG4625@2|Bacteria,1N2PM@1224|Proteobacteria,2TR8N@28211|Alphaproteobacteria,1JXNI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,Phytase-like
DYD3_k127_6655407_3	675817.VDA_001209	5.966e-20	105.0	COG1309@1|root,COG1309@2|Bacteria,1N3KN@1224|Proteobacteria,1SA7U@1236|Gammaproteobacteria,1XV8I@135623|Vibrionales	135623|Vibrionales	K	Transcriptional regulator	luxR	-	-	ko:K10913	ko02020,ko02024,ko05111,map02020,map02024,map05111	-	-	-	ko00000,ko00001,ko03000	-	-	-	TetR_N
DYD3_k127_6655407_2	1280946.HY29_12545	4.029e-125	411.0	COG3173@1|root,COG3173@2|Bacteria,1R7XK@1224|Proteobacteria,2TTWB@28211|Alphaproteobacteria,43XYD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	Aminoglycoside phosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	APH,EcKinase
DYD3_k127_6655407_0	402881.Plav_2500	6.252e-166	533.0	2DB8I@1|root,2Z7RY@2|Bacteria,1MY4M@1224|Proteobacteria,2U2A8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6655407_1	1380394.JADL01000010_gene4358	7.791e-137	444.0	COG1533@1|root,COG1533@2|Bacteria,1MW0H@1224|Proteobacteria,2TQQB@28211|Alphaproteobacteria,2JPFF@204441|Rhodospirillales	204441|Rhodospirillales	L	Elongator protein 3, MiaB family, Radical SAM	-	-	-	-	-	-	-	-	-	-	-	-	Radical_SAM
DYD3_k127_6680000_8	1054213.HMPREF9946_02885	5.281e-36	141.0	COG5642@1|root,COG5642@2|Bacteria,1NAEY@1224|Proteobacteria,2U6F6@28211|Alphaproteobacteria,2JTU8@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF2384)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2384
DYD3_k127_6680000_9	342113.DM82_1374	3.019e-18	93.0	COG5654@1|root,COG5654@2|Bacteria,1N0C8@1224|Proteobacteria,2VUHV@28216|Betaproteobacteria,1K8SJ@119060|Burkholderiaceae	28216|Betaproteobacteria	S	RES	-	-	-	-	-	-	-	-	-	-	-	-	RES
DYD3_k127_6680000_0	1287276.X752_28460	1.927e-131	428.0	COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,2TT62@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Fatty acid desaturase	-	-	1.14.19.1	ko:K00507	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212	-	R02222	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
DYD3_k127_6680000_6	1161401.ASJA01000017_gene1277	4.089e-41	155.0	COG0640@1|root,COG0640@2|Bacteria,1MZ5G@1224|Proteobacteria,2UDQ0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	arsR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
DYD3_k127_6680000_1	715226.ABI_20070	3.041e-120	398.0	COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,2TTC7@28211|Alphaproteobacteria,2KFSA@204458|Caulobacterales	204458|Caulobacterales	M	Belongs to the NAD(P)-dependent epimerase dehydratase family	-	-	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_6680000_5	626887.J057_16370	1.372e-66	229.0	COG2128@1|root,COG2128@2|Bacteria,1RD1K@1224|Proteobacteria,1S714@1236|Gammaproteobacteria,4690F@72275|Alteromonadaceae	1236|Gammaproteobacteria	O	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_6680000_7	1219035.NT2_01_05890	1.03e-37	146.0	COG1846@1|root,COG1846@2|Bacteria,1N7BN@1224|Proteobacteria,2UINK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	MarR family	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
DYD3_k127_6680000_2	1282876.BAOK01000001_gene2984	3.547e-108	357.0	COG2513@1|root,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,2TTP8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate	-	-	4.1.3.32	ko:K20454	ko00760,ko01120,map00760,map01120	-	R01355	RC00286,RC01810	ko00000,ko00001,ko01000	-	-	-	PEP_mutase
DYD3_k127_6680000_4	190650.CC_3096	4.796e-79	267.0	COG0346@1|root,COG0346@2|Bacteria,1MWCV@1224|Proteobacteria,2U6HU@28211|Alphaproteobacteria,2KGEV@204458|Caulobacterales	204458|Caulobacterales	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD3_k127_6680000_3	450851.PHZ_c2268	1.813e-104	342.0	COG2128@1|root,COG2128@2|Bacteria,1PMH5@1224|Proteobacteria,2TVAY@28211|Alphaproteobacteria,2KF8S@204458|Caulobacterales	204458|Caulobacterales	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_6681508_2	1220535.IMCC14465_18170	6.052e-136	444.0	COG0346@1|root,COG0346@2|Bacteria,1MUWY@1224|Proteobacteria,2TTMJ@28211|Alphaproteobacteria,4BSIN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_26520	-	1.13.11.2	ko:K00446	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
DYD3_k127_6681508_7	1121035.AUCH01000001_gene1755	4.094e-20	94.0	COG1018@1|root,COG1018@2|Bacteria,1NA1K@1224|Proteobacteria,2VUWC@28216|Betaproteobacteria,2KXFE@206389|Rhodocyclales	206389|Rhodocyclales	C	2Fe-2S iron-sulfur cluster binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer2
DYD3_k127_6681508_1	1121127.JAFA01000077_gene6809	9.123e-145	467.0	COG2871@1|root,COG2871@2|Bacteria,1QTUV@1224|Proteobacteria,2VIBG@28216|Betaproteobacteria,1K4ZV@119060|Burkholderiaceae	28216|Betaproteobacteria	C	Oxidoreductase FAD-binding domain	-	-	-	ko:K16246	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_6681508_5	1437824.BN940_04346	6.091e-38	146.0	2DGRK@1|root,32U7S@2|Bacteria,1N22H@1224|Proteobacteria,2VSPD@28216|Betaproteobacteria,3T816@506|Alcaligenaceae	28216|Betaproteobacteria	Q	Phenol hydroxylase conserved region	poxE	-	-	ko:K16245	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	Phenol_monoox
DYD3_k127_6681508_0	983920.Y88_3156	1.671e-273	852.0	COG3350@1|root,COG3350@2|Bacteria,1MWWK@1224|Proteobacteria,2TTTX@28211|Alphaproteobacteria,2K9SP@204457|Sphingomonadales	204457|Sphingomonadales	S	Methane/Phenol/Toluene Hydroxylase	-	-	-	ko:K16242	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002,ko01000	-	-	-	Phenol_Hydrox,YHS
DYD3_k127_6681508_6	983920.Y88_3155	4.869e-29	119.0	2CJVU@1|root,32S7J@2|Bacteria,1N03Q@1224|Proteobacteria,2UHRI@28211|Alphaproteobacteria,2KBNK@204457|Sphingomonadales	204457|Sphingomonadales	C	MmoB/DmpM family	-	-	-	ko:K16244	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	MmoB_DmpM
DYD3_k127_6681508_4	983920.Y88_3154	6.099e-131	425.0	2DB9W@1|root,2Z7Z9@2|Bacteria,1MZFV@1224|Proteobacteria,2TU3Q@28211|Alphaproteobacteria,2K8Z9@204457|Sphingomonadales	204457|Sphingomonadales	C	Methane/Phenol/Toluene Hydroxylase	-	-	-	ko:K16243	ko00361,ko00362,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00623,map01100,map01120,map01220	M00548	R03560,R03608,R10042,R10043	RC00046,RC00490	ko00000,ko00001,ko00002	-	-	-	Phenol_Hydrox
DYD3_k127_6681508_3	1198232.CYCME_2555	1.214e-131	436.0	2AJ2D@1|root,319KQ@2|Bacteria,1NT1V@1224|Proteobacteria	1224|Proteobacteria	S	Outer membrane lipoprotein-sorting protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1329
DYD3_k127_6682890_4	1380391.JIAS01000011_gene5225	5.298e-115	383.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,2JPPV@204441|Rhodospirillales	204441|Rhodospirillales	E	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate	-	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD3_k127_6682890_3	744979.R2A130_2059	2.795e-128	417.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TSIY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_6682890_6	1266998.ATUJ01000004_gene1372	1.155e-93	333.0	COG1173@1|root,COG1173@2|Bacteria,1MU0P@1224|Proteobacteria,2TSX5@28211|Alphaproteobacteria,2PVMQ@265|Paracoccus	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_6682890_0	1287116.X734_04800	7.981e-239	749.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQNH@28211|Alphaproteobacteria,43HF0@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	P	Oligopeptide/dipeptide transporter, C-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran,oligo_HPY
DYD3_k127_6682890_5	1297570.MESS4_830122	1.434e-97	325.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,43P2W@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
DYD3_k127_6682890_7	1353537.TP2_13730	4.259e-76	264.0	COG4341@1|root,COG4341@2|Bacteria,1QHQD@1224|Proteobacteria,2U0VM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	HD phosphohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HD,MIOX
DYD3_k127_6682890_2	1144342.PMI40_01342	2.014e-130	433.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2VJTV@28216|Betaproteobacteria,474E5@75682|Oxalobacteraceae	28216|Betaproteobacteria	M	TIGRFAM efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	ttgC_1	-	-	-	-	-	-	-	-	-	-	-	OEP
DYD3_k127_6682890_1	1523503.JPMY01000042_gene2978	4.508e-162	520.0	COG0577@1|root,COG1136@1|root,COG0577@2|Bacteria,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,1RNUJ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	macB	-	-	ko:K05685	ko02010,map02010	M00709	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.122.1,3.A.1.122.12	-	-	ABC_tran,FtsX,MacB_PCD
DYD3_k127_6699360_1	1380391.JIAS01000003_gene1778	4.128e-104	349.0	COG0520@1|root,COG0520@2|Bacteria,1MUPD@1224|Proteobacteria,2TRNY@28211|Alphaproteobacteria,2JPRG@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_5
DYD3_k127_6699360_0	469383.Cwoe_3628	3.714e-122	417.0	COG1231@1|root,COG1231@2|Bacteria,2GK23@201174|Actinobacteria,4CRC9@84995|Rubrobacteria	84995|Rubrobacteria	E	Flavin containing amine oxidoreductase	-	-	1.4.3.4	ko:K00274	ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034	M00135	R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354	RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
DYD3_k127_6699360_2	1187851.A33M_0828	1.541e-92	315.0	COG0715@1|root,COG0715@2|Bacteria,1R5S6@1224|Proteobacteria,2U3X1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	NMT1-like family	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1_2
DYD3_k127_6700343_2	1173264.KI913949_gene2014	5.81e-37	149.0	COG1396@1|root,COG1396@2|Bacteria,1G398@1117|Cyanobacteria	1117|Cyanobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
DYD3_k127_6700343_3	1123256.KB907930_gene3476	5.438e-26	111.0	2EGC2@1|root,33A3V@2|Bacteria,1NKH3@1224|Proteobacteria,1SVNU@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Domain of unknown function (DUF4345)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4345
DYD3_k127_6700343_1	1121033.AUCF01000013_gene1615	2.122e-43	164.0	COG1522@1|root,COG1522@2|Bacteria,1N0DP@1224|Proteobacteria,2UC1F@28211|Alphaproteobacteria,2JTAZ@204441|Rhodospirillales	204441|Rhodospirillales	K	helix_turn_helix ASNC type	-	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_AsnC-type
DYD3_k127_6700343_0	261292.Nit79A3_2911	5.182e-111	395.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2VNQ5@28216|Betaproteobacteria,373VM@32003|Nitrosomonadales	28216|Betaproteobacteria	Q	Haemolysin-type calcium-binding	-	-	-	-	-	-	-	-	-	-	-	-	CAP,HemolysinCabind,Peptidase_M10
DYD3_k127_671011_4	639283.Snov_4065	7.061e-93	307.0	COG0687@1|root,COG0687@2|Bacteria,1PRWU@1224|Proteobacteria,2U2MI@28211|Alphaproteobacteria,3EYWY@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Required for the activity of the bacterial periplasmic transport system of putrescine	potD	-	-	ko:K11069	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	SBP_bac_6,SBP_bac_8
DYD3_k127_671011_1	1121033.AUCF01000024_gene216	2.688e-146	471.0	COG3842@1|root,COG3842@2|Bacteria,1QMMW@1224|Proteobacteria,2TUGR@28211|Alphaproteobacteria,2JQ8E@204441|Rhodospirillales	204441|Rhodospirillales	E	TOBE domain	-	-	3.6.3.31	ko:K11072	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.11.1	-	-	ABC_tran,TOBE_2
DYD3_k127_671011_3	269796.Rru_A3013	1.286e-129	419.0	COG1176@1|root,COG1176@2|Bacteria,1NNYP@1224|Proteobacteria,2U084@28211|Alphaproteobacteria,2JRNR@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K11071	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_671011_2	269796.Rru_A3012	1.068e-130	426.0	COG1177@1|root,COG1177@2|Bacteria,1R29Z@1224|Proteobacteria,2TQM5@28211|Alphaproteobacteria,2JQU4@204441|Rhodospirillales	204441|Rhodospirillales	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K11070	ko02010,map02010	M00299	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.1	-	-	BPD_transp_1
DYD3_k127_671011_0	1121033.AUCF01000024_gene213	5.799e-211	671.0	COG4992@1|root,COG4992@2|Bacteria,1R6U9@1224|Proteobacteria,2TU7P@28211|Alphaproteobacteria,2JRGV@204441|Rhodospirillales	204441|Rhodospirillales	E	Aminotransferase class-III	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_3
DYD3_k127_6716000_9	450851.PHZ_c2379	2.228e-19	90.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TTAK@28211|Alphaproteobacteria,2KI7X@204458|Caulobacterales	204458|Caulobacterales	H	Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide	bioF	-	2.3.1.47	ko:K00652	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R03210,R10124	RC00004,RC00039,RC02725	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
DYD3_k127_6716000_0	1187851.A33M_0606	1.332e-150	487.0	COG0502@1|root,COG0502@2|Bacteria,1MVFF@1224|Proteobacteria,2TSD6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism	bioB	-	2.8.1.6	ko:K01012	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R01078	RC00441	ko00000,ko00001,ko00002,ko01000	-	-	-	BATS,Radical_SAM
DYD3_k127_6716000_3	272568.GDI1919	3.856e-95	315.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,2JPWS@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	bioA	-	2.6.1.62	ko:K00833	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R03231	RC00006,RC00887	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_6716000_4	477184.KYC_26542	9.526e-88	293.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2VKJI@28216|Betaproteobacteria,3T1IS@506|Alcaligenaceae	28216|Betaproteobacteria	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	bioA	-	2.6.1.62	ko:K00833	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R03231	RC00006,RC00887	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_6716000_8	402881.Plav_0498	4.464e-26	117.0	COG1309@1|root,COG1309@2|Bacteria,1RFAP@1224|Proteobacteria,2U9T7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator, TetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6716000_6	502025.Hoch_1349	1.562e-50	192.0	COG3662@1|root,COG3662@2|Bacteria,1R50Q@1224|Proteobacteria,434F8@68525|delta/epsilon subdivisions,2WYSP@28221|Deltaproteobacteria,2Z0I5@29|Myxococcales	28221|Deltaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2236
DYD3_k127_6716000_1	1122604.JONR01000058_gene4014	1.395e-111	366.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,1RS3G@1236|Gammaproteobacteria,1X5X5@135614|Xanthomonadales	135614|Xanthomonadales	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_6716000_7	1122137.AQXF01000003_gene2408	3.611e-41	158.0	COG1309@1|root,COG1309@2|Bacteria,1N1Q3@1224|Proteobacteria,2TVF4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_N
DYD3_k127_6716000_2	266264.Rmet_4197	1.6e-110	362.0	COG1028@1|root,COG1028@2|Bacteria,1MWJQ@1224|Proteobacteria,2VIQH@28216|Betaproteobacteria,1K4BI@119060|Burkholderiaceae	28216|Betaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_6716000_5	1395571.TMS3_0105265	9.291e-75	257.0	COG3917@1|root,COG3917@2|Bacteria,1MWB9@1224|Proteobacteria,1S4K8@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	2-hydroxychromene-2-carboxylate isomerase	-	-	5.99.1.4	ko:K14584	ko00626,ko01100,ko01120,ko01220,map00626,map01100,map01120,map01220	M00534	R05137	RC03084	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	DSBA
DYD3_k127_6718422_0	1121123.AUAO01000001_gene890	4.498e-277	882.0	COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2TRFB@28211|Alphaproteobacteria,2KFVI@204458|Caulobacterales	204458|Caulobacterales	S	PFAM peptidase M16 domain protein	-	-	-	ko:K07263	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M16,Peptidase_M16_C
DYD3_k127_6718422_1	269796.Rru_A2001	3.055e-88	305.0	COG3528@1|root,COG3528@2|Bacteria,1R601@1224|Proteobacteria,2U1IH@28211|Alphaproteobacteria,2JPW1@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	DUF2219
DYD3_k127_6718422_2	755178.Cyan10605_1657	6.366e-26	110.0	COG1694@1|root,COG1694@2|Bacteria,1GA07@1117|Cyanobacteria	1117|Cyanobacteria	S	Pyrophosphatase	-	-	-	-	-	-	-	-	-	-	-	-	MazG
DYD3_k127_6730318_1	1038858.AXBA01000017_gene1084	4.347e-217	679.0	COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,2TUN5@28211|Alphaproteobacteria,3EYMK@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Amino acid permease	-	-	-	ko:K03294,ko:K16238	-	-	-	-	ko00000,ko02000	2.A.3.2,2.A.3.5	-	-	AA_permease_2
DYD3_k127_6730318_0	1380391.JIAS01000012_gene4095	5.979e-232	724.0	COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TU6U@28211|Alphaproteobacteria,2JPVH@204441|Rhodospirillales	204441|Rhodospirillales	E	Glutamine synthetase, catalytic domain	-	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_6730318_2	1380394.JADL01000011_gene3947	6.622e-197	629.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TRJV@28211|Alphaproteobacteria,2JP8V@204441|Rhodospirillales	204441|Rhodospirillales	C	Aldehyde dehydrogenase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldedh
DYD3_k127_6730318_3	1120792.JAFV01000001_gene2633	3.01e-162	520.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2TSX8@28211|Alphaproteobacteria,36ZCT@31993|Methylocystaceae	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	mdh1	-	1.1.1.1,1.1.1.61	ko:K00001,ko:K00043	ko00010,ko00071,ko00350,ko00625,ko00626,ko00650,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00010,map00071,map00350,map00625,map00626,map00650,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220	-	R00623,R00754,R01644,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	Fe-ADH
DYD3_k127_6730318_4	438753.AZC_4594	7.507e-16	81.0	COG0518@1|root,COG0518@2|Bacteria,1Q2PQ@1224|Proteobacteria,2U196@28211|Alphaproteobacteria,3F0JM@335928|Xanthobacteraceae	28211|Alphaproteobacteria	F	Peptidase C26	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
DYD3_k127_6732038_5	626418.bglu_2g11410	6.708e-59	215.0	COG2175@1|root,COG2175@2|Bacteria,1MV5K@1224|Proteobacteria,2VHIY@28216|Betaproteobacteria,1K1EH@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	PFAM Taurine catabolism dioxygenase TauD TfdA	tauD	-	1.14.11.17	ko:K03119	ko00430,ko00920,map00430,map00920	-	R05320	RC01331	ko00000,ko00001,ko01000	-	-	-	TauD
DYD3_k127_6732038_4	795666.MW7_2060	3.582e-75	260.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2VN0U@28216|Betaproteobacteria,1K458@119060|Burkholderiaceae	28216|Betaproteobacteria	G	Class II aldolase adducin family protein	-	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
DYD3_k127_6732038_3	1121033.AUCF01000001_gene2460	2.623e-87	310.0	COG0534@1|root,COG0534@2|Bacteria,1MUAM@1224|Proteobacteria,2TSDU@28211|Alphaproteobacteria,2JRCJ@204441|Rhodospirillales	204441|Rhodospirillales	V	MatE	norM	-	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
DYD3_k127_6732038_6	1380394.JADL01000002_gene1810	2.944e-45	187.0	COG5285@1|root,COG5285@2|Bacteria,1R7DG@1224|Proteobacteria,2TTB2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_6732038_1	243231.GSU0474	2.313e-135	463.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,42M0W@68525|delta/epsilon subdivisions,2WIK8@28221|Deltaproteobacteria,43TNR@69541|Desulfuromonadales	28221|Deltaproteobacteria	T	GGDEF domain containing protein	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GAF_2,GGDEF,PAS,PAS_3,PAS_9,Response_reg
DYD3_k127_6732038_2	1095769.CAHF01000011_gene2321	2.605e-99	356.0	COG0642@1|root,COG5002@1|root,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,2VJI1@28216|Betaproteobacteria,472QC@75682|Oxalobacteraceae	28216|Betaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,Response_reg
DYD3_k127_6732038_0	1123257.AUFV01000008_gene662	8.202e-259	815.0	COG0243@1|root,COG0243@2|Bacteria,1NR6J@1224|Proteobacteria,1RN6S@1236|Gammaproteobacteria,1X3SK@135614|Xanthomonadales	135614|Xanthomonadales	C	Molybdopterin oxidoreductase Fe4S4 domain	-	-	-	-	-	-	-	-	-	-	-	-	Molybdop_Fe4S4,Molybdopterin,Molydop_binding
DYD3_k127_6738224_5	1337093.MBE-LCI_1946	0.0008684	44.0	COG0637@1|root,COG0637@2|Bacteria,1NF90@1224|Proteobacteria,2U9G8@28211|Alphaproteobacteria,2P9GZ@245186|Loktanella	28211|Alphaproteobacteria	S	HAD-hyrolase-like	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
DYD3_k127_6738224_0	1430440.MGMSRv2_2690	6.911e-199	639.0	COG2812@1|root,COG2812@2|Bacteria,1MVCK@1224|Proteobacteria,2TRPB@28211|Alphaproteobacteria,2JPWI@204441|Rhodospirillales	204441|Rhodospirillales	H	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	dnaX	-	2.7.7.7	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2,DNA_pol3_gamma3,DUF3646
DYD3_k127_6738224_3	1123072.AUDH01000006_gene3325	7.237e-36	141.0	COG0718@1|root,COG0718@2|Bacteria,1RGZD@1224|Proteobacteria,2UBQB@28211|Alphaproteobacteria,2JT9R@204441|Rhodospirillales	204441|Rhodospirillales	S	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection	-	-	-	ko:K09747	-	-	-	-	ko00000	-	-	-	YbaB_DNA_bd
DYD3_k127_6738224_2	1479238.JQMZ01000001_gene980	2.03e-83	283.0	COG0353@1|root,COG0353@2|Bacteria,1MV9Q@1224|Proteobacteria,2TRZM@28211|Alphaproteobacteria,43XFW@69657|Hyphomonadaceae	28211|Alphaproteobacteria	L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO	recR	-	-	ko:K06187	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecR,Toprim_4
DYD3_k127_6738224_4	443598.AUFA01000004_gene5226	1.811e-13	79.0	2E2WI@1|root,32XXU@2|Bacteria,1RA3Z@1224|Proteobacteria,2U6TE@28211|Alphaproteobacteria,3JYC3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6738224_1	266835.14024111	2.376e-130	449.0	COG1305@1|root,COG1305@2|Bacteria,1R5Q7@1224|Proteobacteria,2U8DG@28211|Alphaproteobacteria,43N4G@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Domain of Unknown Function with PDB structure (DUF3857)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3857,TPR_16,Transglut_core
DYD3_k127_6750223_0	1121123.AUAO01000001_gene1160	1.894e-274	865.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,2KFUZ@204458|Caulobacterales	204458|Caulobacterales	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K03296	-	-	-	-	ko00000	2.A.6.2	-	-	ACR_tran
DYD3_k127_6750223_1	1121123.AUAO01000001_gene1159	6.264e-76	270.0	COG0845@1|root,COG0845@2|Bacteria,1MXGH@1224|Proteobacteria,2U18A@28211|Alphaproteobacteria,2KF43@204458|Caulobacterales	204458|Caulobacterales	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	HlyD_D23
DYD3_k127_6750223_3	991905.SL003B_1472	1.088e-43	167.0	COG1309@1|root,COG1309@2|Bacteria,1MVQV@1224|Proteobacteria,2TRPA@28211|Alphaproteobacteria,4BS0D@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_11,TetR_N
DYD3_k127_6750223_4	1123229.AUBC01000007_gene63	1.68e-14	76.0	2E9CD@1|root,333K3@2|Bacteria,1NDUJ@1224|Proteobacteria,2UHR7@28211|Alphaproteobacteria,3K1WY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6750223_2	757424.Hsero_3446	9.826e-64	227.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2VJTV@28216|Betaproteobacteria,47284@75682|Oxalobacteraceae	28216|Betaproteobacteria	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
DYD3_k127_6752780_4	1168059.KB899087_gene3535	2.828e-35	137.0	COG1905@1|root,COG1905@2|Bacteria,1RHBU@1224|Proteobacteria,2U72T@28211|Alphaproteobacteria,3EZGY@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	Thioredoxin-like [2Fe-2S] ferredoxin	fdsG	-	-	ko:K00127	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001	-	-	-	2Fe-2S_thioredx
DYD3_k127_6752780_0	1038858.AXBA01000010_gene2630	1.715e-142	457.0	COG0583@1|root,COG0583@2|Bacteria,1N4P5@1224|Proteobacteria,2TQYX@28211|Alphaproteobacteria,3EXXC@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	oxyS	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_6752780_3	237727.NAP1_03180	1.13e-37	154.0	COG2259@1|root,COG2259@2|Bacteria,1P3TQ@1224|Proteobacteria,2UVGS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	DoxX	-	-	-	-	-	-	-	-	-	-	-	-	DoxX
DYD3_k127_6752780_1	438753.AZC_2256	2.406e-64	229.0	COG2087@1|root,COG2087@2|Bacteria,1RH0A@1224|Proteobacteria,2U98X@28211|Alphaproteobacteria,3EZH4@335928|Xanthobacteraceae	28211|Alphaproteobacteria	H	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate	cobP	-	2.7.1.156,2.7.7.62	ko:K02231	ko00860,ko01100,map00860,map01100	M00122	R05221,R05222,R06558	RC00002,RC00428	ko00000,ko00001,ko00002,ko01000	-	-	-	CobU
DYD3_k127_6752780_2	1317124.DW2_04465	2.173e-44	169.0	COG3761@1|root,COG3761@2|Bacteria,1RHS3@1224|Proteobacteria,2U95G@28211|Alphaproteobacteria,2XNEK@285107|Thioclava	28211|Alphaproteobacteria	C	NADH dehydrogenase	MA20_29090	-	1.6.99.3	ko:K00356	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	NDUFA12
DYD3_k127_6754103_1	1121861.KB899946_gene3940	5.524e-101	332.0	COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2UQAG@28211|Alphaproteobacteria,2JR6D@204441|Rhodospirillales	204441|Rhodospirillales	V	COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components	-	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD3_k127_6754103_2	402881.Plav_1114	7.627e-91	304.0	COG0688@1|root,COG0688@2|Bacteria,1MW45@1224|Proteobacteria,2TRMG@28211|Alphaproteobacteria,1JNYX@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer)	psd	-	4.1.1.65	ko:K01613	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00093	R02055	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	PS_Dcarbxylase
DYD3_k127_6754103_3	1333998.M2A_2331	3.406e-84	292.0	COG1183@1|root,COG1183@2|Bacteria,1MWD9@1224|Proteobacteria,2TUF7@28211|Alphaproteobacteria,4BQ4X@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pssA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.8.8	ko:K17103	ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110	M00093	R01800	RC00002,RC00017,RC02795	ko00000,ko00001,ko00002,ko01000	-	-	-	CDP-OH_P_tran_2,CDP-OH_P_transf
DYD3_k127_6754103_0	1121033.AUCF01000010_gene4402	0.0	1150.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,2JQTV@204441|Rhodospirillales	204441|Rhodospirillales	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	vexF	-	-	ko:K18989	-	M00720	-	-	ko00000,ko00002,ko02000	2.A.6.2.30	-	-	ACR_tran
DYD3_k127_6754103_4	1282876.BAOK01000001_gene2458	3.672e-84	299.0	COG0845@1|root,COG0845@2|Bacteria,1MVFN@1224|Proteobacteria,2TRSC@28211|Alphaproteobacteria,4BQQP@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Barrel-sandwich domain of CusB or HlyD membrane-fusion	-	-	-	ko:K18990	-	M00720	-	-	ko00000,ko00002,ko02000	2.A.6.2.30,8.A.1	-	-	Biotin_lipoyl_2,HlyD_D23
DYD3_k127_6754103_5	402881.Plav_0172	4.054e-47	175.0	COG1695@1|root,COG1695@2|Bacteria,1N33P@1224|Proteobacteria,2VER5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator PadR-like family	-	-	-	-	-	-	-	-	-	-	-	-	PadR,Vir_act_alpha_C
DYD3_k127_6754103_6	414684.RC1_3671	2.094e-22	104.0	COG1278@1|root,COG1278@2|Bacteria,1RAUE@1224|Proteobacteria,2U0S7@28211|Alphaproteobacteria,2JZRC@204441|Rhodospirillales	204441|Rhodospirillales	K	Ribonuclease B OB domain	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD3_k127_675451_13	883126.HMPREF9710_03162	8.306e-15	76.0	COG2072@1|root,COG2072@2|Bacteria,1N7E1@1224|Proteobacteria,2VU4N@28216|Betaproteobacteria,477WQ@75682|Oxalobacteraceae	28216|Betaproteobacteria	P	flavoprotein involved in K transport	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_675451_4	1101191.KI912577_gene454	5.172e-130	429.0	COG2144@1|root,COG2144@2|Bacteria,1MVYM@1224|Proteobacteria,2TRX4@28211|Alphaproteobacteria,1JSW0@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	AIR synthase related protein, C-terminal domain	-	-	-	ko:K07123	-	-	-	-	ko00000	-	-	-	AIRS,AIRS_C
DYD3_k127_675451_10	1121033.AUCF01000014_gene1293	1.63e-67	235.0	COG0454@1|root,COG0456@2|Bacteria,1RF8I@1224|Proteobacteria,2U5VJ@28211|Alphaproteobacteria,2JWW0@204441|Rhodospirillales	204441|Rhodospirillales	K	Acetyltransferase (GNAT) family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD3_k127_675451_0	1131813.AQVT01000001_gene175	6.718e-191	602.0	COG2516@1|root,COG2516@2|Bacteria,1MWZQ@1224|Proteobacteria,2TV9Z@28211|Alphaproteobacteria,1JSPN@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Elongator protein 3, MiaB family, Radical SAM	-	-	-	-	-	-	-	-	-	-	-	-	Radical_SAM
DYD3_k127_675451_2	381666.H16_A1956	1.034e-157	503.0	COG0388@1|root,COG0388@2|Bacteria,1MWQG@1224|Proteobacteria,2VHZT@28216|Betaproteobacteria,1K4J1@119060|Burkholderiaceae	28216|Betaproteobacteria	S	PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase	-	-	3.5.5.7	ko:K01502	ko00643,ko01120,map00643,map01120	-	R05358	RC01336	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
DYD3_k127_675451_7	930169.B5T_02897	1.04e-91	303.0	COG2044@1|root,COG2044@2|Bacteria,1MXBQ@1224|Proteobacteria,1S2JG@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	PFAM DsrE DsrF-like family	-	-	-	-	-	-	-	-	-	-	-	-	DrsE
DYD3_k127_675451_1	438753.AZC_0074	2.782e-175	560.0	COG1167@1|root,COG1167@2|Bacteria,1MUJE@1224|Proteobacteria,2TQZZ@28211|Alphaproteobacteria,3EY0V@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	helix_turn_helix gluconate operon transcriptional repressor	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
DYD3_k127_675451_9	84531.JMTZ01000031_gene109	4.102e-78	269.0	COG4912@1|root,COG4912@2|Bacteria,1RGVM@1224|Proteobacteria,1T116@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	DNA alkylation repair enzyme	-	-	-	-	-	-	-	-	-	-	-	-	DNA_alkylation
DYD3_k127_675451_3	717785.HYPMC_1410	4.19e-154	494.0	COG3191@1|root,COG3191@2|Bacteria,1MWDP@1224|Proteobacteria,2TUI2@28211|Alphaproteobacteria,3N8AD@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	EQ	Peptidase family S58	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S58
DYD3_k127_675451_11	1510531.JQJJ01000009_gene1321	3.701e-54	193.0	COG1959@1|root,COG1959@2|Bacteria,1RDA4@1224|Proteobacteria,2U9GW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Rrf2
DYD3_k127_675451_8	639283.Snov_4158	1.78e-86	293.0	COG1174@1|root,COG1174@2|Bacteria,1MX8D@1224|Proteobacteria,2VETG@28211|Alphaproteobacteria,3F1GR@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	yehW	-	-	ko:K05845,ko:K05846	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1
DYD3_k127_675451_5	639283.Snov_4159	5.11e-115	378.0	COG1125@1|root,COG1125@2|Bacteria,1QTUC@1224|Proteobacteria,2TTMA@28211|Alphaproteobacteria,3F0Z2@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	ABC transporter	yehX	GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0031460,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0072337	-	ko:K05847	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	ABC_tran,CBS
DYD3_k127_675451_6	639283.Snov_4160	1.176e-92	317.0	COG1174@1|root,COG1174@2|Bacteria,1MXA1@1224|Proteobacteria,2TUNH@28211|Alphaproteobacteria,3F184@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	yehY	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0072337	-	ko:K05846	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1
DYD3_k127_6755331_4	196490.AUEZ01000037_gene2874	2.605e-11	66.0	COG2336@1|root,COG2336@2|Bacteria,1N7H2@1224|Proteobacteria,2UEKP@28211|Alphaproteobacteria,3K12Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	SpoVT / AbrB like domain	-	-	-	ko:K07172	-	-	-	-	ko00000,ko02048	-	-	-	MazE_antitoxin
DYD3_k127_6755331_1	1122604.JONR01000011_gene3607	2.941e-123	407.0	2DB8Y@1|root,2Z7TF@2|Bacteria,1MW4C@1224|Proteobacteria,1RQC5@1236|Gammaproteobacteria,1X4V9@135614|Xanthomonadales	135614|Xanthomonadales	S	Uncharacterized protein conserved in bacteria (DUF2236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2236
DYD3_k127_6755331_0	591158.SSMG_02043	5.549e-146	471.0	COG4638@1|root,COG4638@2|Bacteria,2GKMV@201174|Actinobacteria	201174|Actinobacteria	P	Rieske 2Fe-2S	kshA	GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0006066,GO:0006629,GO:0006694,GO:0006706,GO:0006707,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008610,GO:0009056,GO:0009058,GO:0009405,GO:0009987,GO:0010033,GO:0014070,GO:0016042,GO:0016043,GO:0016125,GO:0016127,GO:0016491,GO:0016705,GO:0016709,GO:0022607,GO:0033993,GO:0036200,GO:0036314,GO:0042221,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044238,GO:0044281,GO:0044282,GO:0044419,GO:0046164,GO:0046872,GO:0046914,GO:0047086,GO:0048037,GO:0050292,GO:0050896,GO:0051259,GO:0051260,GO:0051536,GO:0051537,GO:0051540,GO:0051704,GO:0055114,GO:0065003,GO:0070206,GO:0070207,GO:0070723,GO:0071704,GO:0071840,GO:0097305,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901700,GO:1902652	1.14.13.142	ko:K15982	ko00984,ko01100,ko01120,map00984,map01100,map01120	-	R09860	RC02691	ko00000,ko00001,ko01000	-	-	-	Rieske
DYD3_k127_6755331_3	1267005.KB911257_gene960	1.944e-51	186.0	COG1733@1|root,COG1733@2|Bacteria,1MZ6N@1224|Proteobacteria,2UC19@28211|Alphaproteobacteria,3N8SB@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_6755331_2	69395.JQLZ01000003_gene51	1.377e-105	354.0	COG0702@1|root,COG0702@2|Bacteria,1MW44@1224|Proteobacteria,2TRDF@28211|Alphaproteobacteria,2KIIH@204458|Caulobacterales	204458|Caulobacterales	GM	NmrA-like family	-	-	1.6.5.2	ko:K19267	ko00130,ko01110,map00130,map01110	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	NAD_binding_10,NmrA
DYD3_k127_6758350_5	1380394.JADL01000004_gene6050	2.746e-27	115.0	COG3791@1|root,COG3791@2|Bacteria,1N031@1224|Proteobacteria,2UC7G@28211|Alphaproteobacteria,2JTQX@204441|Rhodospirillales	204441|Rhodospirillales	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
DYD3_k127_6758350_0	402881.Plav_2027	1.94e-117	389.0	COG3268@1|root,COG3268@2|Bacteria,1MVI3@1224|Proteobacteria,2TV1G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Saccharopine dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Sacchrp_dh_NADP
DYD3_k127_6758350_1	420324.KI912045_gene4622	2.498e-104	342.0	COG2128@1|root,COG2128@2|Bacteria,1MUDM@1224|Proteobacteria,2TTY5@28211|Alphaproteobacteria,1JTZJ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	-	-	-	-	-	-	-	-	-	-	-	-	CMD
DYD3_k127_6758350_2	1366050.N234_00670	6.909e-87	291.0	COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,2VW59@28216|Betaproteobacteria,1KHAS@119060|Burkholderiaceae	28216|Betaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N
DYD3_k127_6758350_4	663610.JQKO01000019_gene3056	7.577e-40	164.0	COG1215@1|root,COG1215@2|Bacteria,1R8UT@1224|Proteobacteria,2TVQT@28211|Alphaproteobacteria,3NAHA@45404|Beijerinckiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 21	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_3,Glyco_transf_21
DYD3_k127_6758350_3	1366050.N234_27015	2.905e-82	280.0	COG2124@1|root,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,2VIRM@28216|Betaproteobacteria,1K55M@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
DYD3_k127_6774632_5	1408224.SAMCCGM7_c5337	3.253e-28	120.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2VEV0@28211|Alphaproteobacteria,4BDEF@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	Peptidase M10 serralysin C terminal	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M10_C
DYD3_k127_6774632_0	113355.CM001775_gene1785	6.783e-132	449.0	COG0652@1|root,COG2931@1|root,COG0652@2|Bacteria,COG2931@2|Bacteria,1G1I0@1117|Cyanobacteria	1117|Cyanobacteria	Q	Hemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	He_PIG,HemolysinCabind,Peptidase_M10_C
DYD3_k127_6774632_1	69395.JQLZ01000002_gene1185	1.298e-67	240.0	COG3735@1|root,COG3735@2|Bacteria,1MVCW@1224|Proteobacteria,2U5RA@28211|Alphaproteobacteria,2KGAW@204458|Caulobacterales	204458|Caulobacterales	S	PFAM GumN family protein	-	-	-	ko:K09973	-	-	-	-	ko00000	-	-	-	TraB
DYD3_k127_6774632_3	1112209.AHVZ01000019_gene1180	6.361e-55	199.0	COG0586@1|root,COG0586@2|Bacteria,1RGII@1224|Proteobacteria,1S844@1236|Gammaproteobacteria,3NKH1@468|Moraxellaceae	1236|Gammaproteobacteria	S	SNARE associated Golgi protein	-	-	3.1.3.1	ko:K01077	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	-	-	-	SNARE_assoc
DYD3_k127_6774632_4	414684.RC1_4120	1.187e-36	152.0	COG1495@1|root,COG1495@2|Bacteria,1N89I@1224|Proteobacteria,2UF49@28211|Alphaproteobacteria,2JTU4@204441|Rhodospirillales	204441|Rhodospirillales	O	bond formation protein, DsbB	-	-	-	-	-	-	-	-	-	-	-	-	DsbB
DYD3_k127_6774632_2	1207063.P24_15886	1.653e-66	231.0	COG2941@1|root,COG2941@2|Bacteria,1RAK4@1224|Proteobacteria,2U85I@28211|Alphaproteobacteria,2JSA9@204441|Rhodospirillales	204441|Rhodospirillales	H	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol	coq7	-	-	ko:K06134	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00128	R04984,R08775	RC01254	ko00000,ko00001,ko00002,ko01000	-	-	-	COQ7
DYD3_k127_6798337_0	331869.BAL199_19463	4.27e-220	688.0	COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,2TSYQ@28211|Alphaproteobacteria,4BPBS@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	ftsH	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,FtsH_ext,Peptidase_M41
DYD3_k127_6798337_1	1380394.JADL01000003_gene5060	4.422e-71	254.0	COG0037@1|root,COG0037@2|Bacteria,1MU85@1224|Proteobacteria,2TRK1@28211|Alphaproteobacteria,2JPJP@204441|Rhodospirillales	204441|Rhodospirillales	J	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine	tilS	-	6.3.4.19	ko:K04075	-	-	R09597	RC02633,RC02634	ko00000,ko01000,ko03016	-	-	-	ATP_bind_3
DYD3_k127_6801454_3	931627.MycrhDRAFT_0714	5.743e-12	69.0	COG1393@1|root,COG1393@2|Bacteria,2IHRP@201174|Actinobacteria,23A0W@1762|Mycobacteriaceae	201174|Actinobacteria	P	Belongs to the ArsC family	arsC	-	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	-	ArsC
DYD3_k127_6801454_1	1207063.P24_18391	5.97e-168	534.0	COG3177@1|root,COG3177@2|Bacteria,1MV69@1224|Proteobacteria,2TT3J@28211|Alphaproteobacteria,2JRM4@204441|Rhodospirillales	204441|Rhodospirillales	S	Fic/DOC family	-	-	-	-	-	-	-	-	-	-	-	-	DUF4172,Fic,Fic_N,HTH_24
DYD3_k127_6801454_0	287.DR97_5618	2.751e-197	619.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RMMJ@1236|Gammaproteobacteria,1YFI4@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_6801454_2	316057.RPD_3105	2.442e-50	180.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JR13@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	atoB	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_6815463_12	1040983.AXAE01000037_gene2585	6.675e-84	292.0	COG2235@1|root,COG2235@2|Bacteria,1NCGV@1224|Proteobacteria,2TU0Z@28211|Alphaproteobacteria,43GUQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Arginine	arcA	-	3.5.3.6	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	-	R00552	RC00177	ko00000,ko00001,ko01000	-	-	-	Amidinotransf
DYD3_k127_6815463_2	1082933.MEA186_07919	6.967e-253	787.0	COG0531@1|root,COG0531@2|Bacteria,1MUA2@1224|Proteobacteria,2V9SQ@28211|Alphaproteobacteria,43PZ0@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Amino acid permease	-	-	-	ko:K03758	-	-	-	-	ko00000,ko02000	2.A.3.2	-	-	AA_permease_2
DYD3_k127_6815463_4	639283.Snov_3183	4.59e-170	541.0	COG0842@1|root,COG0842@2|Bacteria,1MUIA@1224|Proteobacteria,2TU4P@28211|Alphaproteobacteria,3EYNP@335928|Xanthobacteraceae	28211|Alphaproteobacteria	V	PFAM ABC-2 type transporter	yhhJ	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD3_k127_6815463_0	639283.Snov_3184	0.0	1319.0	COG0842@1|root,COG1129@1|root,COG0842@2|Bacteria,COG1129@2|Bacteria,1QTT9@1224|Proteobacteria,2TW58@28211|Alphaproteobacteria,3EZ04@335928|Xanthobacteraceae	28211|Alphaproteobacteria	V	PFAM ABC transporter related	-	-	-	ko:K13926	-	-	-	-	ko00000	-	-	-	ABC2_membrane_3,ABC_tran
DYD3_k127_6815463_7	1168059.KB899087_gene4241	7.712e-131	426.0	COG0845@1|root,COG0845@2|Bacteria,1MUG6@1224|Proteobacteria,2TTRG@28211|Alphaproteobacteria,3EZBK@335928|Xanthobacteraceae	28211|Alphaproteobacteria	M	PFAM secretion protein HlyD family protein	-	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_6815463_1	395963.Bind_1231	4.515e-310	962.0	COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,2TRNK@28211|Alphaproteobacteria,3NAUM@45404|Beijerinckiaceae	28211|Alphaproteobacteria	O	Peptidase family M41	-	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,FtsH_ext,Peptidase_M41
DYD3_k127_6815463_3	311403.Arad_7565	3.819e-188	593.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTYY@28211|Alphaproteobacteria,4BAXH@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Zn-dependent alcohol dehydrogenases	adhA	-	1.1.1.1	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_6815463_5	1125973.JNLC01000010_gene1336	1.562e-165	535.0	COG0645@1|root,COG2187@1|root,COG0645@2|Bacteria,COG2187@2|Bacteria,1MU9M@1224|Proteobacteria,2TQJN@28211|Alphaproteobacteria,3JR3X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain	-	-	-	ko:K07028	-	-	-	-	ko00000	-	-	-	AAA_33,APH
DYD3_k127_6815463_14	1411123.JQNH01000001_gene3846	2.926e-64	229.0	COG0589@1|root,COG0589@2|Bacteria,1MWHD@1224|Proteobacteria,2U0GR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	PFAM UspA domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Usp
DYD3_k127_6815463_16	266779.Meso_2230	5.575e-37	143.0	2D1BA@1|root,32TAA@2|Bacteria,1RJQD@1224|Proteobacteria,2U780@28211|Alphaproteobacteria,43KCS@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6815463_10	402881.Plav_1997	1.602e-95	327.0	COG3741@1|root,COG3741@2|Bacteria,1MY4D@1224|Proteobacteria,2TUPZ@28211|Alphaproteobacteria,1JN1M@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	N-formylglutamate amidohydrolase	MA20_06380	-	3.5.1.68	ko:K01458	ko00340,ko00630,map00340,map00630	-	R00525	RC00165,RC00323	ko00000,ko00001,ko01000	-	-	-	FGase
DYD3_k127_6815463_15	1207063.P24_14060	4.214e-56	210.0	COG1247@1|root,COG1247@2|Bacteria,1RDHN@1224|Proteobacteria,2U98I@28211|Alphaproteobacteria,2JSWH@204441|Rhodospirillales	204441|Rhodospirillales	M	COG1247 Sortase and related acyltransferases	-	-	2.3.1.183	ko:K03823	ko00440,ko01130,map00440,map01130	-	R08871,R08938	RC00004,RC00064	ko00000,ko00001,ko01000	-	-	-	Acetyltransf_4
DYD3_k127_6815463_13	570967.JMLV01000002_gene1921	2.243e-69	246.0	COG1597@1|root,COG1597@2|Bacteria,1RIPU@1224|Proteobacteria,2TVUD@28211|Alphaproteobacteria,2JRPQ@204441|Rhodospirillales	204441|Rhodospirillales	I	COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase	-	-	-	-	-	-	-	-	-	-	-	-	DAGK_cat
DYD3_k127_6815463_8	1430440.MGMSRv2_2853	3.782e-125	407.0	COG2908@1|root,COG2908@2|Bacteria,1MVKD@1224|Proteobacteria,2TSEB@28211|Alphaproteobacteria,2JQH4@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos,Metallophos_2
DYD3_k127_6815463_6	414684.RC1_2250	1.657e-137	450.0	COG0438@1|root,COG0438@2|Bacteria,1MUB7@1224|Proteobacteria,2TQQ0@28211|Alphaproteobacteria,2JPMU@204441|Rhodospirillales	204441|Rhodospirillales	M	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4
DYD3_k127_6815463_9	522306.CAP2UW1_2502	3.181e-99	335.0	COG0604@1|root,COG0604@2|Bacteria,1MWRK@1224|Proteobacteria,2VJ1C@28216|Betaproteobacteria,1KR7Q@119066|unclassified Betaproteobacteria	28216|Betaproteobacteria	C	Zinc-binding dehydrogenase	-	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_6815463_11	1504981.KO116_2559	8.517e-86	301.0	COG0045@1|root,COG1042@1|root,COG1670@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,COG1670@2|Bacteria,1MW98@1224|Proteobacteria,1RPXX@1236|Gammaproteobacteria,1XHR6@135619|Oceanospirillales	135619|Oceanospirillales	C	Succinyl-CoA ligase like flavodoxin domain	-	-	-	ko:K09181	-	-	-	-	ko00000	-	-	-	ATP-grasp_5,Acetyltransf_1,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
DYD3_k127_6821699_4	1380356.JNIK01000017_gene2854	9.953e-05	54.0	COG0596@1|root,COG0596@2|Bacteria,2GK79@201174|Actinobacteria,4EUG8@85013|Frankiales	201174|Actinobacteria	S	Epoxide hydrolase N terminus	-	-	-	-	-	-	-	-	-	-	-	-	EHN
DYD3_k127_6821699_2	414684.RC1_2201	2.431e-35	150.0	29RC6@1|root,30CE8@2|Bacteria,1R3PV@1224|Proteobacteria,2TYW8@28211|Alphaproteobacteria,2JUY8@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6821699_1	1380391.JIAS01000019_gene1342	3.321e-112	372.0	COG1215@1|root,COG1215@2|Bacteria,1QU2F@1224|Proteobacteria,2U0P8@28211|Alphaproteobacteria,2JPNG@204441|Rhodospirillales	204441|Rhodospirillales	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD3_k127_6821699_0	1207063.P24_18511	2.852e-168	539.0	COG0312@1|root,COG0312@2|Bacteria,1MUVW@1224|Proteobacteria,2TSAV@28211|Alphaproteobacteria,2JQGM@204441|Rhodospirillales	204441|Rhodospirillales	S	Zn-dependent proteases and their inactivated homologs	pmbA	-	-	ko:K03592	-	-	-	-	ko00000,ko01002	-	-	-	PmbA_TldD
DYD3_k127_6821699_3	1449049.JONW01000005_gene1542	8.567e-08	58.0	COG0483@1|root,COG0483@2|Bacteria,1MV4W@1224|Proteobacteria,2TV4R@28211|Alphaproteobacteria,2KG1E@204458|Caulobacterales	204458|Caulobacterales	G	Belongs to the inositol monophosphatase superfamily	-	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
DYD3_k127_6829615_0	1121015.N789_10340	3.54e-131	439.0	COG2114@1|root,COG2114@2|Bacteria,1R86S@1224|Proteobacteria,1SMMJ@1236|Gammaproteobacteria,1XA3K@135614|Xanthomonadales	135614|Xanthomonadales	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF4071,Guanylate_cyc
DYD3_k127_6829615_1	1121033.AUCF01000031_gene114	1.692e-123	403.0	COG4177@1|root,COG4177@2|Bacteria,1MWP3@1224|Proteobacteria,2TR99@28211|Alphaproteobacteria,2JPQ6@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2
DYD3_k127_6833323_7	224911.27354165	5.363e-60	215.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2U06A@28211|Alphaproteobacteria,3JW6G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_6833323_0	1037409.BJ6T_38220	0.0	1240.0	COG0591@1|root,COG0745@1|root,COG4251@1|root,COG0591@2|Bacteria,COG0745@2|Bacteria,COG4251@2|Bacteria,1QTSW@1224|Proteobacteria,2TW0C@28211|Alphaproteobacteria,3JU2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	PAS fold	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_7,Response_reg
DYD3_k127_6833323_6	420324.KI911956_gene3507	2.073e-71	247.0	COG4665@1|root,COG4665@2|Bacteria,1RHBW@1224|Proteobacteria,2TT9A@28211|Alphaproteobacteria,1JXUZ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	Q	Tripartite ATP-independent periplasmic transporters, DctQ component	-	-	-	-	-	-	-	-	-	-	-	-	DctQ
DYD3_k127_6833323_1	420324.KI911956_gene3506	5.087e-301	933.0	COG4664@1|root,COG4664@2|Bacteria,1R4MZ@1224|Proteobacteria,2TQNR@28211|Alphaproteobacteria,1JXE3@119045|Methylobacteriaceae	28211|Alphaproteobacteria	Q	Tripartite ATP-independent periplasmic transporter, DctM component	-	-	-	-	-	-	-	-	-	-	-	-	DctM
DYD3_k127_6833323_2	670292.JH26_07490	1.371e-179	568.0	COG4663@1|root,COG4663@2|Bacteria,1MVMD@1224|Proteobacteria,2TS4J@28211|Alphaproteobacteria,1JT9B@119045|Methylobacteriaceae	28211|Alphaproteobacteria	Q	Part of the tripartite ATP-independent periplasmic (TRAP) transport system	MA20_25950	-	-	-	-	-	-	-	-	-	-	-	DctP,TAT_signal
DYD3_k127_6833323_8	1121861.KB899928_gene1484	1.79e-11	68.0	2DXYW@1|root,3478D@2|Bacteria,1P0ZZ@1224|Proteobacteria,2UMQ6@28211|Alphaproteobacteria,2JY7J@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6833323_5	631454.N177_2175	4.512e-118	389.0	COG0491@1|root,COG0491@2|Bacteria,1N6PM@1224|Proteobacteria,2TRZ4@28211|Alphaproteobacteria,1JNY9@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD3_k127_6833323_3	395492.Rleg2_1579	4.862e-137	445.0	COG3853@1|root,COG3853@2|Bacteria,1MZ3B@1224|Proteobacteria,2TQZD@28211|Alphaproteobacteria,4BD7B@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Toxic anion resistance protein (TelA)	telA	-	-	-	-	-	-	-	-	-	-	-	TelA
DYD3_k127_6833323_4	1040986.ATYO01000012_gene5184	3.256e-119	391.0	COG1840@1|root,COG2304@1|root,COG1840@2|Bacteria,COG2304@2|Bacteria,1N0JX@1224|Proteobacteria,2U3UZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	von Willebrand factor type A domain	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	SBP_bac_11,VWA,VWA_3
DYD3_k127_6833591_9	1320556.AVBP01000009_gene2367	7.301e-34	133.0	COG0388@1|root,COG0388@2|Bacteria,1RC9F@1224|Proteobacteria,2UPC1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	CN_hydrolase
DYD3_k127_6833591_2	1089551.KE386572_gene420	1.155e-227	717.0	COG0477@1|root,COG0477@2|Bacteria,1MXZ3@1224|Proteobacteria,2TSHC@28211|Alphaproteobacteria,4BRJQ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	EGP	Transmembrane secretion effector	-	-	-	-	-	-	-	-	-	-	-	-	MFS_3
DYD3_k127_6833591_8	420324.KI911992_gene7697	3.958e-50	186.0	COG2259@1|root,COG2259@2|Bacteria,1NCQF@1224|Proteobacteria,2VG5A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	DoxX	-	-	-	-	-	-	-	-	-	-	-	-	DoxX
DYD3_k127_6833591_0	864069.MicloDRAFT_00067260	0.0	1090.0	COG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,2TT4X@28211|Alphaproteobacteria,1JZ98@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_3
DYD3_k127_6833591_10	1510531.JQJJ01000017_gene4355	1.327e-30	126.0	COG4317@1|root,COG4317@2|Bacteria,1N7ZU@1224|Proteobacteria,2UGRZ@28211|Alphaproteobacteria,3K0QZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1427)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1427
DYD3_k127_6833591_7	864069.MicloDRAFT_00067250	3.761e-113	367.0	COG1335@1|root,COG1335@2|Bacteria,1MU5N@1224|Proteobacteria,2TU4C@28211|Alphaproteobacteria,1JVU3@119045|Methylobacteriaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_6833591_6	420324.KI911992_gene7710	1.118e-134	455.0	COG0583@1|root,COG0583@2|Bacteria,1PX1B@1224|Proteobacteria,2TUE7@28211|Alphaproteobacteria,1JSA4@119045|Methylobacteriaceae	28211|Alphaproteobacteria	K	PFAM regulatory protein LysR	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_6833591_4	1280947.HY30_00520	3.114e-181	571.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,2TQRT@28211|Alphaproteobacteria,43XYZ@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	COG2070 Dioxygenases related to 2-nitropropane dioxygenase	MA20_07330	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
DYD3_k127_6833591_5	196367.JNFG01000007_gene6813	1.075e-140	452.0	COG0697@1|root,COG0697@2|Bacteria,1MVHN@1224|Proteobacteria,2VN11@28216|Betaproteobacteria,1K2PR@119060|Burkholderiaceae	28216|Betaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD3_k127_6833591_1	196367.JNFG01000007_gene6814	2.236e-242	755.0	COG1167@1|root,COG1167@2|Bacteria,1MV6F@1224|Proteobacteria,2VH8F@28216|Betaproteobacteria,1K0Y9@119060|Burkholderiaceae	28216|Betaproteobacteria	K	aminotransferase class I and II	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
DYD3_k127_6833591_3	264198.Reut_B5038	8.292e-213	673.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VNJM@28216|Betaproteobacteria,1K04U@119060|Burkholderiaceae	28216|Betaproteobacteria	IQ	Long-chain fatty acid--CoA ligase	-	-	6.2.1.48	ko:K02182	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_685027_10	1122604.JONR01000004_gene793	1.685e-66	235.0	COG1028@1|root,COG1028@2|Bacteria,1MUPX@1224|Proteobacteria,1RRW3@1236|Gammaproteobacteria,1X55U@135614|Xanthomonadales	135614|Xanthomonadales	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_685027_14	1502850.FG91_00530	6.8e-11	68.0	COG4922@1|root,COG4922@2|Bacteria,1N95Q@1224|Proteobacteria,2URF2@28211|Alphaproteobacteria,2K5ZK@204457|Sphingomonadales	204457|Sphingomonadales	S	Nuclear transport factor 2 (NTF2) domain	-	-	5.3.3.1	ko:K01822	ko00140,ko00984,ko01100,ko01120,map00140,map00984,map01100,map01120	M00107,M00110	R01837,R02216,R02499,R02840,R03327,R04163,R04678,R04849,R09955	RC00146,RC00762	ko00000,ko00001,ko00002,ko01000	-	-	-	SnoaL_2
DYD3_k127_685027_7	1245471.PCA10_13800	3.911e-93	312.0	COG1028@1|root,COG1028@2|Bacteria,1P1U4@1224|Proteobacteria,1RR3M@1236|Gammaproteobacteria,1YJ2B@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_685027_2	1123269.NX02_07795	1.973e-165	529.0	COG2159@1|root,COG2159@2|Bacteria,1N0C7@1224|Proteobacteria,2VGQZ@28211|Alphaproteobacteria,2K3G4@204457|Sphingomonadales	204457|Sphingomonadales	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
DYD3_k127_685027_3	1219035.NT2_08_00270	1.957e-132	430.0	COG4638@1|root,COG4638@2|Bacteria,1N3CA@1224|Proteobacteria,2VG2K@28211|Alphaproteobacteria,2K2DK@204457|Sphingomonadales	204457|Sphingomonadales	P	Rieske [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
DYD3_k127_685027_8	745310.G432_16970	3.114e-91	313.0	COG4689@1|root,COG4689@2|Bacteria,1PKWQ@1224|Proteobacteria,2VD0K@28211|Alphaproteobacteria,2K3KZ@204457|Sphingomonadales	204457|Sphingomonadales	Q	Acetoacetate decarboxylase (ADC)	-	-	4.1.1.4	ko:K01574	ko00072,ko00640,ko01100,map00072,map00640,map01100	M00088	R01366	RC00040	ko00000,ko00001,ko00002,ko01000	-	-	-	ADC
DYD3_k127_685027_6	1030157.AFMP01000064_gene2180	2.243e-100	337.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TWIJ@28211|Alphaproteobacteria,2K265@204457|Sphingomonadales	204457|Sphingomonadales	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD3_k127_685027_11	13689.BV96_00225	5.163e-58	205.0	COG2030@1|root,COG2030@2|Bacteria,1RHPH@1224|Proteobacteria,2UQQP@28211|Alphaproteobacteria,2KD9Q@204457|Sphingomonadales	204457|Sphingomonadales	I	MaoC like domain	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
DYD3_k127_685027_1	392499.Swit_3636	2.39e-191	603.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,2K0V0@204457|Sphingomonadales	204457|Sphingomonadales	I	Belongs to the thiolase family	-	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
DYD3_k127_685027_5	1125973.JNLC01000010_gene1606	2.078e-102	340.0	COG0637@1|root,COG0637@2|Bacteria,1MX6B@1224|Proteobacteria,2TTVS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the HAD-like hydrolase superfamily. PhnX family	phnX	-	3.11.1.1	ko:K05306	ko00440,ko01100,ko01120,map00440,map01100,map01120	-	R00747	RC00368	ko00000,ko00001,ko01000	-	-	-	HAD_2,Hydrolase
DYD3_k127_685027_12	414684.RC1_0271	2.045e-46	175.0	COG1309@1|root,COG1309@2|Bacteria,1N6R3@1224|Proteobacteria,2UIAY@28211|Alphaproteobacteria,2JZP3@204441|Rhodospirillales	204441|Rhodospirillales	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
DYD3_k127_685027_9	414684.RC1_0272	5.062e-85	294.0	COG0845@1|root,COG0845@2|Bacteria,1NJDF@1224|Proteobacteria,2TSZA@28211|Alphaproteobacteria,2JSG8@204441|Rhodospirillales	204441|Rhodospirillales	M	Barrel-sandwich domain of CusB or HlyD membrane-fusion	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD3_k127_685027_0	414684.RC1_0273	0.0	1405.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,2JQH0@204441|Rhodospirillales	204441|Rhodospirillales	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
DYD3_k127_685027_15	1205680.CAKO01000002_gene2524	2.323e-07	62.0	2E9YS@1|root,3344A@2|Bacteria,1NKBF@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF3592)	ymfA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	DUF3592
DYD3_k127_685027_13	1155714.KB891995_gene4278	1.311e-11	72.0	2E9YS@1|root,3344A@2|Bacteria,2IJZ5@201174|Actinobacteria	201174|Actinobacteria	S	Protein of unknown function (DUF3592)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3592
DYD3_k127_685027_4	414684.RC1_2764	5.369e-132	436.0	COG0045@1|root,COG0454@1|root,COG1042@1|root,COG0045@2|Bacteria,COG0456@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,2JPV8@204441|Rhodospirillales	204441|Rhodospirillales	C	COG1042 Acyl-CoA synthetase (NDP forming)	yfiQ	-	-	ko:K09181	-	-	-	-	ko00000	-	-	-	ATP-grasp_5,Acetyltransf_1,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
DYD3_k127_6860677_1	402881.Plav_1060	1.328e-144	464.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TQRA@28211|Alphaproteobacteria,1JPS7@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Acyl-CoA dehydrogenase, N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD3_k127_6860677_7	414684.RC1_2721	7.795e-17	81.0	COG3313@1|root,COG3313@2|Bacteria,1NGD5@1224|Proteobacteria	1224|Proteobacteria	S	Fe-S protein	RSC1457	-	-	ko:K06938	-	-	-	-	ko00000	-	-	-	Cys_rich_CWC,DUF1289
DYD3_k127_6860677_6	111780.Sta7437_1062	3.779e-21	95.0	COG2002@1|root,COG2002@2|Bacteria,1G811@1117|Cyanobacteria,3VKP2@52604|Pleurocapsales	1117|Cyanobacteria	K	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	-	-	-	-	-	-	-	-	-	-	-	-	DUF2281,MazE_antitoxin
DYD3_k127_6860677_5	323098.Nwi_3084	8.321e-34	134.0	COG5611@1|root,COG5611@2|Bacteria,1RDUI@1224|Proteobacteria,2U8YA@28211|Alphaproteobacteria,3K09M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD3_k127_6860677_8	1144343.PMI41_01543	2.01e-06	60.0	COG3203@1|root,COG3203@2|Bacteria,1MXN6@1224|Proteobacteria,2TSH7@28211|Alphaproteobacteria,43H4M@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	-	-	-	-	-	-	-	-	-	-	-	-	Porin_2
DYD3_k127_6860677_3	1336235.JAEG01000001_gene1900	4.897e-102	339.0	COG0007@1|root,COG0007@2|Bacteria,1MUI0@1224|Proteobacteria,2TRJC@28211|Alphaproteobacteria,4BA2J@82115|Rhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the precorrin methyltransferase family	cobA	-	1.3.1.76,2.1.1.107,4.99.1.4	ko:K02302,ko:K02303	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02864,R03194,R03947	RC00003,RC00871,RC01012,RC01034	ko00000,ko00001,ko00002,ko01000	-	-	-	CysG_dimeriser,NAD_binding_7,Sirohm_synth_M,TP_methylase
DYD3_k127_6860677_2	1449065.JMLL01000010_gene136	8.785e-127	409.0	COG1028@1|root,COG1028@2|Bacteria,1R756@1224|Proteobacteria,2U232@28211|Alphaproteobacteria,43MTU@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_6860677_0	1320556.AVBP01000001_gene4413	3.166e-270	840.0	COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria	1224|Proteobacteria	E	amino acid	-	-	-	ko:K16238	-	-	-	-	ko00000,ko02000	2.A.3.5	-	-	AA_permease_2
DYD3_k127_6860677_4	1320556.AVBP01000001_gene4414	1.969e-98	330.0	COG2197@1|root,COG2197@2|Bacteria,1PEVI@1224|Proteobacteria,2VB50@28211|Alphaproteobacteria,43MG5@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
DYD3_k127_6874948_0	243233.MCA0498	1.045e-51	207.0	COG4094@1|root,COG4094@2|Bacteria,1RDV6@1224|Proteobacteria,1SAUX@1236|Gammaproteobacteria,1XGC9@135618|Methylococcales	135618|Methylococcales	S	NnrU protein	-	-	-	-	-	-	-	-	-	-	-	-	NnrU
DYD3_k127_6874948_1	1238182.C882_1420	4.571e-44	167.0	COG0526@1|root,COG0526@2|Bacteria,1QTY9@1224|Proteobacteria,2TW6Y@28211|Alphaproteobacteria,2JRIK@204441|Rhodospirillales	204441|Rhodospirillales	CO	Thioredoxin-like	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,NHL,Thioredoxin_8
DYD3_k127_6875522_2	1254432.SCE1572_13900	3.218e-35	138.0	COG3931@1|root,COG3931@2|Bacteria,1QI71@1224|Proteobacteria,42RKD@68525|delta/epsilon subdivisions,2WNAE@28221|Deltaproteobacteria,2YZWW@29|Myxococcales	28221|Deltaproteobacteria	E	N-formylglutamate amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	FGase
DYD3_k127_6875522_0	1151127.KB906333_gene3975	2.892e-108	376.0	COG4655@1|root,COG4655@2|Bacteria,1RJCR@1224|Proteobacteria,1RSIS@1236|Gammaproteobacteria,1YS4M@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	S	Putative Tad-like Flp pilus-assembly	-	-	-	-	-	-	-	-	-	-	-	-	Tad,Tad_C
DYD3_k127_6875522_3	317655.Sala_1101	3.508e-12	73.0	COG4961@1|root,COG4961@2|Bacteria,1N1I2@1224|Proteobacteria,2UBY5@28211|Alphaproteobacteria,2K6SE@204457|Sphingomonadales	204457|Sphingomonadales	U	TadE-like protein	-	-	-	-	-	-	-	-	-	-	-	-	TadE
DYD3_k127_6875522_1	587753.EY04_02745	2.574e-43	174.0	COG4655@1|root,COG4655@2|Bacteria,1RJCR@1224|Proteobacteria,1RSIS@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	Tad,Tad_C
DYD3_k127_6885757_3	395963.Bind_2266	7.232e-48	189.0	COG0666@1|root,COG0666@2|Bacteria,1MZSX@1224|Proteobacteria,2UC99@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	response to abiotic stimulus	-	-	-	-	-	-	-	-	-	-	-	-	Ank
DYD3_k127_6885757_4	1121015.N789_10480	5.832e-38	158.0	COG0666@1|root,COG0666@2|Bacteria,1R2FT@1224|Proteobacteria,1SJ5W@1236|Gammaproteobacteria,1X8QR@135614|Xanthomonadales	135614|Xanthomonadales	S	response to abiotic stimulus	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6885757_0	1333998.M2A_2255	5.179e-264	820.0	COG2072@1|root,COG2072@2|Bacteria,1MU71@1224|Proteobacteria,2TV2E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Flavoprotein involved in K transport	MA20_23085	-	-	-	-	-	-	-	-	-	-	-	FMO-like,K_oxygenase,NAD_binding_8,Pyr_redox_2
DYD3_k127_6885757_2	69395.JQLZ01000009_gene1962	5.255e-89	299.0	COG0412@1|root,COG0412@2|Bacteria,1MW88@1224|Proteobacteria,2U1D8@28211|Alphaproteobacteria,2KG13@204458|Caulobacterales	204458|Caulobacterales	Q	Dienelactone hydrolase family	-	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
DYD3_k127_6885757_1	1333998.M2A_0203	2.692e-125	412.0	COG0604@1|root,COG0604@2|Bacteria,1MWBD@1224|Proteobacteria,2TS3Z@28211|Alphaproteobacteria,4BPT8@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	PFAM Alcohol dehydrogenase GroES-like domain	qor	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_6889940_1	1082931.KKY_3355	1.1e-102	339.0	COG0177@1|root,COG0177@2|Bacteria,1MUYQ@1224|Proteobacteria,2TRI2@28211|Alphaproteobacteria,3N6AV@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate	nth	-	4.2.99.18	ko:K10773	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	EndIII_4Fe-2S,HhH-GPD
DYD3_k127_6889940_2	402881.Plav_3569	3.945e-39	161.0	COG5488@1|root,COG5488@2|Bacteria,1NPQQ@1224|Proteobacteria,2UB81@28211|Alphaproteobacteria,1JP97@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Integral membrane protein (DUF2244)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2244
DYD3_k127_6889940_0	1211115.ALIQ01000214_gene146	4.675e-114	375.0	COG0350@1|root,COG2169@1|root,COG0350@2|Bacteria,COG2169@2|Bacteria,1N2YQ@1224|Proteobacteria,2TQRX@28211|Alphaproteobacteria,3NANU@45404|Beijerinckiaceae	28211|Alphaproteobacteria	FL	6-O-methylguanine DNA methyltransferase, DNA binding domain	ada	-	2.1.1.63	ko:K10778	-	-	-	-	ko00000,ko01000,ko03000,ko03400	-	-	-	DNA_binding_1,HTH_18
DYD3_k127_6912455_1	1545915.JROG01000009_gene2805	3.099e-61	230.0	COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,2JZY5@204457|Sphingomonadales	204457|Sphingomonadales	MU	membrane	-	-	-	ko:K12340	ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133	M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko02044	1.B.17,2.A.6.2	-	-	OEP
DYD3_k127_6912455_3	1280952.HJA_02145	2.763e-18	93.0	COG1309@1|root,COG1309@2|Bacteria,1N91A@1224|Proteobacteria,2UGM7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_6912455_0	1122963.AUHB01000005_gene2768	3.253e-244	762.0	COG0775@1|root,COG0775@2|Bacteria,1MUMQ@1224|Proteobacteria,2TSX1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	F	Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations	amn	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008714,GO:0016787,GO:0016798,GO:0016799,GO:0044424,GO:0044444,GO:0044464	3.2.2.4	ko:K01241	ko00230,map00230	-	R00182	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	AMNp_N,PNP_UDP_1
DYD3_k127_6912455_2	1523503.JPMY01000029_gene1145	4.162e-23	105.0	COG2207@1|root,COG2207@2|Bacteria,1Q3UX@1224|Proteobacteria,1RS88@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
DYD3_k127_6918100_1	492774.JQMB01000002_gene770	1.814e-178	571.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TR00@28211|Alphaproteobacteria,4B9AZ@82115|Rhizobiaceae	28211|Alphaproteobacteria	J	Amidase	-	-	3.5.1.54	ko:K01457	ko00220,ko00791,ko01100,ko01120,map00220,map00791,map01100,map01120	-	R00005	RC02756	ko00000,ko00001,ko01000	-	-	-	Amidase
DYD3_k127_6918100_0	1123257.AUFV01000018_gene3706	0.0	1388.0	COG0439@1|root,COG1984@1|root,COG2049@1|root,COG0439@2|Bacteria,COG1984@2|Bacteria,COG2049@2|Bacteria,1MU4H@1224|Proteobacteria,1T1GN@1236|Gammaproteobacteria,1X9PJ@135614|Xanthomonadales	135614|Xanthomonadales	EI	Allophanate hydrolase subunit 2	-	-	6.3.4.6	ko:K01941	ko00220,ko00791,ko01100,map00220,map00791,map01100	-	R00774	RC00378	ko00000,ko00001,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,CT_A_B,CT_C_D
DYD3_k127_6925932_3	1054213.HMPREF9946_04587	1.27e-16	85.0	COG1842@1|root,COG1842@2|Bacteria,1QWAF@1224|Proteobacteria,2TWUV@28211|Alphaproteobacteria,2JPSM@204441|Rhodospirillales	204441|Rhodospirillales	KT	Domain of unknown function (DUF4175)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4175
DYD3_k127_6925932_1	258594.RPA4741	2.437e-181	581.0	COG0019@1|root,COG0019@2|Bacteria,1MUA6@1224|Proteobacteria,2TQPB@28211|Alphaproteobacteria,3JU3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine	lysA	GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.1.1.20	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R00451	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Orn_Arg_deC_N,Orn_DAP_Arg_deC
DYD3_k127_6925932_0	1244869.H261_08393	2.464e-202	649.0	COG0165@1|root,COG0165@2|Bacteria,1MUTU@1224|Proteobacteria,2TR4H@28211|Alphaproteobacteria,2JPHA@204441|Rhodospirillales	204441|Rhodospirillales	E	argininosuccinate lyase	argH	-	4.3.2.1	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	M00029,M00844,M00845	R01086	RC00445,RC00447	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ASL_C2,Lyase_1
DYD3_k127_6925932_2	1207063.P24_01986	6.79e-34	138.0	COG0526@1|root,COG0526@2|Bacteria,1MZ5J@1224|Proteobacteria,2TR0C@28211|Alphaproteobacteria,2JT90@204441|Rhodospirillales	204441|Rhodospirillales	CO	COG0526 Thiol-disulfide isomerase and thioredoxins	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
DYD3_k127_6926065_4	1238182.C882_0964	1.634e-52	188.0	COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,2TRWB@28211|Alphaproteobacteria,2JQBT@204441|Rhodospirillales	204441|Rhodospirillales	E	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia	trpE	-	4.1.3.27	ko:K01657	ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986	RC00010,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	Anth_synt_I_N,Chorismate_bind
DYD3_k127_6926065_3	1089552.KI911559_gene2469	2.798e-87	312.0	COG0760@1|root,COG0760@2|Bacteria,1MWV0@1224|Proteobacteria,2TRYU@28211|Alphaproteobacteria,2JR2E@204441|Rhodospirillales	204441|Rhodospirillales	O	peptidylprolyl isomerase	ppiD	-	5.2.1.8	ko:K03770	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase_2,SurA_N_3
DYD3_k127_6926065_0	1120983.KB894574_gene895	1.858e-175	563.0	COG0677@1|root,COG0677@2|Bacteria,1MUC6@1224|Proteobacteria,2TR5F@28211|Alphaproteobacteria,1JPVY@119043|Rhodobiaceae	28211|Alphaproteobacteria	M	UDP binding domain	-	-	-	ko:K02474	ko00520,map00520	-	R06894	RC00291	ko00000,ko00001,ko01000,ko01005	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD3_k127_6926065_1	1500257.JQNM01000001_gene3535	4.536e-146	469.0	COG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,2TSIP@28211|Alphaproteobacteria,4BBGW@82115|Rhizobiaceae	28211|Alphaproteobacteria	M	UDP-glucuronic acid epimerase	lspL	-	5.1.3.6	ko:K08679	ko00520,ko01100,map00520,map01100	-	R01385	RC00289	ko00000,ko00001,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD3_k127_6926065_2	1122929.KB908233_gene3752	1.002e-97	325.0	COG0149@1|root,COG0149@2|Bacteria,1MWK5@1224|Proteobacteria,2TS6I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	tpiA	GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616	5.3.1.1	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01015	RC00423	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	TIM
DYD3_k127_6926065_5	1370122.JHXQ01000012_gene3562	1.944e-22	102.0	COG1314@1|root,COG1314@2|Bacteria,1N8MF@1224|Proteobacteria,2UCIP@28211|Alphaproteobacteria,4BE1Y@82115|Rhizobiaceae	28211|Alphaproteobacteria	U	Preprotein translocase subunit SecG	secG	-	-	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecG
DYD3_k127_6928938_7	1125973.JNLC01000017_gene3521	9.289e-96	315.0	COG0377@1|root,COG0377@2|Bacteria,1MUI2@1224|Proteobacteria,2TQK3@28211|Alphaproteobacteria,3JTBJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoB	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00331	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q6
DYD3_k127_6928938_9	1528106.JRJE01000031_gene3632	7.392e-84	283.0	COG0852@1|root,COG0852@2|Bacteria,1MX4B@1224|Proteobacteria,2TSMT@28211|Alphaproteobacteria,2JR93@204441|Rhodospirillales	204441|Rhodospirillales	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoC	-	1.6.5.3	ko:K00332	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_30kDa
DYD3_k127_6928938_4	1122137.AQXF01000002_gene112	2.524e-202	636.0	COG0649@1|root,COG0649@2|Bacteria,1MVIN@1224|Proteobacteria,2TQZ0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoD	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00333	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_49kDa
DYD3_k127_6928938_10	414684.RC1_1236	1.154e-80	280.0	COG1905@1|root,COG1905@2|Bacteria,1MWS2@1224|Proteobacteria,2TSEJ@28211|Alphaproteobacteria,2JRYM@204441|Rhodospirillales	204441|Rhodospirillales	C	COG1905 NADH ubiquinone oxidoreductase 24 kD subunit	nuoE	-	1.6.5.3,1.6.99.3	ko:K00334,ko:K03943	ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016	M00143,M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1,3.D.1.6	-	-	2Fe-2S_thioredx
DYD3_k127_6928938_2	1122137.AQXF01000002_gene114	2.144e-243	762.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2TRAH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain	nuoF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00335	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_51K,NADH_4Fe-4S,SLBB
DYD3_k127_6928938_0	1207063.P24_05129	1.277e-318	987.0	COG1034@1|root,COG1034@2|Bacteria,1P8MN@1224|Proteobacteria,2TS97@28211|Alphaproteobacteria,2JPBH@204441|Rhodospirillales	204441|Rhodospirillales	C	COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G)	nuoG	-	1.6.5.3	ko:K00336	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Fer2_4,Molybdopterin,NADH-G_4Fe-4S_3,NADH_dhqG_C
DYD3_k127_6928938_6	1207063.P24_05124	5.317e-159	507.0	COG1005@1|root,COG1005@2|Bacteria,1MU2R@1224|Proteobacteria,2TS09@28211|Alphaproteobacteria,2JPWU@204441|Rhodospirillales	204441|Rhodospirillales	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone	nuoH	-	1.6.5.3	ko:K00337	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	NADHdh
DYD3_k127_6928938_8	1207063.P24_05119	8.661e-91	307.0	COG1143@1|root,COG1143@2|Bacteria,1MV90@1224|Proteobacteria,2TRFE@28211|Alphaproteobacteria,2JPHK@204441|Rhodospirillales	204441|Rhodospirillales	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoI	-	1.6.5.3	ko:K00338	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Fer4
DYD3_k127_6928938_11	402881.Plav_3217	1.148e-74	256.0	COG0839@1|root,COG0839@2|Bacteria,1MWJV@1224|Proteobacteria,2TRB2@28211|Alphaproteobacteria,1JNS0@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	NADH-ubiquinone/plastoquinone oxidoreductase chain 6	nuoJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00339	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q3
DYD3_k127_6928938_12	570952.ATVH01000015_gene1560	1.048e-40	161.0	COG0713@1|root,COG0713@2|Bacteria,1RH0S@1224|Proteobacteria,2U93P@28211|Alphaproteobacteria,2JSRV@204441|Rhodospirillales	204441|Rhodospirillales	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoK	-	1.6.5.3	ko:K00340	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q2
DYD3_k127_6928938_1	1510531.JQJJ01000011_gene2815	8.14e-290	902.0	COG1009@1|root,COG1009@2|Bacteria,1MW2M@1224|Proteobacteria,2TQSS@28211|Alphaproteobacteria,3JSBH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CP	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus	nuoL	-	1.6.5.3	ko:K00341	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	NADH5_C,Proton_antipo_M,Proton_antipo_N
DYD3_k127_6928938_3	1207063.P24_05099	5.474e-222	701.0	COG1008@1|root,COG1008@2|Bacteria,1MV7V@1224|Proteobacteria,2TSNK@28211|Alphaproteobacteria,2JPNK@204441|Rhodospirillales	204441|Rhodospirillales	C	COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M)	nuoM	-	1.6.5.3	ko:K00342	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q5_N,Proton_antipo_M
DYD3_k127_6928938_5	1333998.M2A_1055	2.353e-176	571.0	COG1007@1|root,COG1007@2|Bacteria,1MV56@1224|Proteobacteria,2TQMX@28211|Alphaproteobacteria,4BPBD@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoN	-	1.6.5.3	ko:K00343	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Proton_antipo_M
DYD3_k127_694348_2	1245469.S58_11450	8.937e-92	306.0	COG2141@1|root,COG2141@2|Bacteria,1MUJ9@1224|Proteobacteria,2TQKS@28211|Alphaproteobacteria,3JTAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	1.14.14.28	ko:K20938	-	-	-	-	ko00000,ko01000	-	-	-	Bac_luciferase
DYD3_k127_694348_4	1144343.PMI41_00906	4.254e-14	78.0	2AMNV@1|root,31CJ1@2|Bacteria,1P20R@1224|Proteobacteria,2UU9X@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_694348_0	1144343.PMI41_00907	1.971e-236	742.0	COG0591@1|root,COG0591@2|Bacteria,1N8H2@1224|Proteobacteria,2VFKD@28211|Alphaproteobacteria,43Q4E@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	E	Sodium:solute symporter family	-	-	-	-	-	-	-	-	-	-	-	-	SSF
DYD3_k127_694348_1	710685.MycrhN_3049	3.781e-214	678.0	COG3350@1|root,COG3350@2|Bacteria,2HEAT@201174|Actinobacteria,234I0@1762|Mycobacteriaceae	201174|Actinobacteria	S	Methane phenol toluene hydroxylase	-	-	1.14.13.25	ko:K16157	ko00680,ko01100,ko01120,ko01200,ko01220,map00680,map01100,map01120,map01200,map01220	M00174	R01142	RC00173	ko00000,ko00001,ko00002,ko01000	-	-	-	Phenol_Hydrox
DYD3_k127_694348_3	710685.MycrhN_3050	3.145e-85	290.0	2DB9W@1|root,2Z7Z9@2|Bacteria,2GNW4@201174|Actinobacteria	201174|Actinobacteria	S	PFAM Methane phenol toluene hydroxylase	-	-	1.14.13.25	ko:K16158	ko00680,ko01100,ko01120,ko01200,ko01220,map00680,map01100,map01120,map01200,map01220	M00174	R01142	RC00173	ko00000,ko00001,ko00002,ko01000	-	-	-	Phenol_Hydrox
DYD3_k127_6952403_4	1122135.KB893167_gene2187	4.268e-80	274.0	COG4176@1|root,COG4176@2|Bacteria,1MUM4@1224|Proteobacteria,2TT2M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	ABC-type proline glycine betaine transport system permease component	-	-	-	ko:K02001	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1
DYD3_k127_6952403_1	1089552.KI911559_gene2174	1.242e-148	480.0	COG4175@1|root,COG4175@2|Bacteria,1MU86@1224|Proteobacteria,2TS8Y@28211|Alphaproteobacteria,2JVY2@204441|Rhodospirillales	204441|Rhodospirillales	E	ATPases associated with a variety of cellular activities	-	-	3.6.3.32	ko:K02000	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.12	-	-	ABC_tran
DYD3_k127_6952403_0	1410620.SHLA_13c000760	2.344e-164	524.0	COG2113@1|root,COG2113@2|Bacteria,1MVXS@1224|Proteobacteria,2TUFF@28211|Alphaproteobacteria,4BCS6@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	Substrate binding domain of ABC-type glycine betaine transport system	-	-	-	ko:K02002	ko02010,map02010	M00208	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	OpuAC
DYD3_k127_6952403_3	1287276.X752_08135	5.496e-102	338.0	COG1349@1|root,COG1349@2|Bacteria,1MUJG@1224|Proteobacteria,2TR8U@28211|Alphaproteobacteria,43HAM@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	DeoR C terminal sensor domain	-	-	-	ko:K02444	-	-	-	-	ko00000,ko03000	-	-	-	DeoRC,HTH_DeoR
DYD3_k127_6952403_2	1089551.KE386572_gene2150	3.288e-139	447.0	COG2084@1|root,COG2084@2|Bacteria,1MV48@1224|Proteobacteria,2U0FZ@28211|Alphaproteobacteria,4BRWN@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	garR_1	-	1.1.1.60	ko:K00042	ko00630,ko01100,map00630,map01100	-	R01745,R01747	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
DYD3_k127_6952403_5	1123360.thalar_00538	1.17e-46	171.0	COG5285@1|root,COG5285@2|Bacteria,1MWD5@1224|Proteobacteria,2TWPJ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_6970056_3	1120792.JAFV01000001_gene1808	2.618e-10	61.0	COG3558@1|root,COG3558@2|Bacteria,1RA64@1224|Proteobacteria,2U5FW@28211|Alphaproteobacteria,36Y9U@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1348)	MA20_04335	-	-	ko:K09958	-	-	-	-	ko00000	-	-	-	DUF1348
DYD3_k127_6970056_2	1237149.C900_02853	1.321e-36	159.0	COG0491@1|root,COG0491@2|Bacteria,4NPPW@976|Bacteroidetes,47MDW@768503|Cytophagia	976|Bacteroidetes	S	Metallo-beta-lactamase superfamily	blaB	-	3.5.2.6	ko:K17837	ko01501,map01501	-	R06363	RC01499	ko00000,ko00001,ko01000	-	-	-	Lactamase_B
DYD3_k127_6970056_0	1150626.PHAMO_210241	1.672e-202	650.0	COG0006@1|root,COG0006@2|Bacteria,1MUZS@1224|Proteobacteria,2TQXN@28211|Alphaproteobacteria,2JQSS@204441|Rhodospirillales	204441|Rhodospirillales	E	aminopeptidase	pepP	-	3.4.11.9	ko:K01262	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Creatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C
DYD3_k127_6970056_1	1122929.KB908217_gene289	1.063e-53	196.0	COG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,2TTP3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Ribosomal protein L11 methyltransferase	prmA	-	-	ko:K02687	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PrmA
DYD3_k127_6981024_1	1207063.P24_10725	1.469e-189	614.0	COG4664@1|root,COG4664@2|Bacteria,1R4MZ@1224|Proteobacteria,2TQNR@28211|Alphaproteobacteria,2JQE2@204441|Rhodospirillales	204441|Rhodospirillales	Q	COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component	-	-	-	-	-	-	-	-	-	-	-	-	DctM
DYD3_k127_6981024_7	1207063.P24_10730	1.396e-53	195.0	COG4665@1|root,COG4665@2|Bacteria,1RHBW@1224|Proteobacteria,2U75U@28211|Alphaproteobacteria,2JT3D@204441|Rhodospirillales	204441|Rhodospirillales	Q	COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component	-	-	-	-	-	-	-	-	-	-	-	-	DctQ
DYD3_k127_6981024_0	1089552.KI911559_gene1082	1.833e-242	762.0	COG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,2TSQH@28211|Alphaproteobacteria,2JQMR@204441|Rhodospirillales	204441|Rhodospirillales	F	Amidohydrolase family	-	-	3.5.2.2	ko:K01464	ko00240,ko00410,ko00770,ko00983,ko01100,map00240,map00410,map00770,map00983,map01100	M00046	R02269,R03055,R08227	RC00632,RC00680	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Amidohydro_1
DYD3_k127_6981024_2	1122135.KB893166_gene2984	1.069e-168	551.0	COG0715@1|root,COG0715@2|Bacteria,1MXA3@1224|Proteobacteria,2TQV6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components	thiY	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
DYD3_k127_6981024_6	1528106.JRJE01000020_gene2210	2.575e-122	415.0	COG0600@1|root,COG0600@2|Bacteria,1MVAE@1224|Proteobacteria,2TSP5@28211|Alphaproteobacteria,2JPDX@204441|Rhodospirillales	204441|Rhodospirillales	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_6981024_5	1089552.KI911559_gene1085	2.879e-126	421.0	COG0600@1|root,COG0600@2|Bacteria,1MUAR@1224|Proteobacteria,2TTED@28211|Alphaproteobacteria,2JQGY@204441|Rhodospirillales	204441|Rhodospirillales	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
DYD3_k127_6981024_4	384765.SIAM614_14480	2.437e-133	432.0	COG1116@1|root,COG1116@2|Bacteria,1MUIM@1224|Proteobacteria,2TRHM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	ABC-type nitrate sulfonate bicarbonate transport system ATPase component	tauB	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
DYD3_k127_6981024_3	1218084.BBJK01000064_gene4834	4.174e-158	502.0	COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2VHQ8@28216|Betaproteobacteria,1K0H7@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Amidase, hydantoinase carbamoylase family	-	-	3.5.1.6,3.5.1.87	ko:K06016	ko00240,ko01100,map00240,map01100	M00046	R00905,R04666	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
DYD3_k127_6990812_3	1336208.JADY01000001_gene1199	1.336e-05	48.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TTQD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	receptor	-	-	-	ko:K16090	-	-	-	-	ko00000,ko02000	1.B.14.1.11	-	-	Plug,TonB_dep_Rec
DYD3_k127_6990812_0	290633.GOX0559	1.075e-99	330.0	COG3128@1|root,COG3128@2|Bacteria,1MUI7@1224|Proteobacteria,2TRH2@28211|Alphaproteobacteria,2JS8W@204441|Rhodospirillales	204441|Rhodospirillales	S	carbohydrate binding	-	-	-	ko:K07336	-	-	-	-	ko00000,ko01000	-	-	-	2OG-FeII_Oxy_3
DYD3_k127_6990812_1	864069.MicloDRAFT_00055470	1.015e-56	208.0	COG0811@1|root,COG0811@2|Bacteria,1MXHR@1224|Proteobacteria,2U8C6@28211|Alphaproteobacteria,1JRZQ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	U	PFAM MotA TolQ ExbB proton channel	-	-	-	-	-	-	-	-	-	-	-	-	MotA_ExbB
DYD3_k127_6990812_2	670292.JH26_27180	1.439e-41	157.0	COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,2UA46@28211|Alphaproteobacteria,1JRX0@119045|Methylobacteriaceae	28211|Alphaproteobacteria	U	PFAM Biopolymer transport protein ExbD TolR	tolR	-	-	ko:K03559,ko:K03560	-	-	-	-	ko00000,ko02000	1.A.30.2.1,1.A.30.2.2	-	-	ExbD
DYD3_k127_6992421_5	1267005.KB911257_gene1181	2.75e-45	165.0	COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,2TTDA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
DYD3_k127_6992421_0	1282876.BAOK01000001_gene3392	2.761e-315	974.0	COG0481@1|root,COG0481@2|Bacteria,1MVZA@1224|Proteobacteria,2TR3H@28211|Alphaproteobacteria,4BPPI@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	lepA	-	-	ko:K03596	ko05134,map05134	-	-	-	ko00000,ko00001	-	-	-	EFG_C,EFG_II,GTP_EFTU,GTP_EFTU_D2,LepA_C
DYD3_k127_6992421_1	136993.KB900626_gene764	8.927e-267	843.0	COG0072@1|root,COG0073@1|root,COG0072@2|Bacteria,COG0073@2|Bacteria,1MWKS@1224|Proteobacteria,2TQV8@28211|Alphaproteobacteria,36XCK@31993|Methylocystaceae	28211|Alphaproteobacteria	J	B3/4 domain	pheT	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	B3_4,B5,FDX-ACB,tRNA_bind
DYD3_k127_6992421_2	1211115.ALIQ01000214_gene178	4.028e-166	530.0	COG0016@1|root,COG0016@2|Bacteria,1MVD7@1224|Proteobacteria,2TS2T@28211|Alphaproteobacteria,3NA5Q@45404|Beijerinckiaceae	28211|Alphaproteobacteria	J	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily	pheS	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.20	ko:K01889	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Phe_tRNA-synt_N,tRNA-synt_2d
DYD3_k127_6992421_4	1207063.P24_03700	2.715e-51	183.0	COG0292@1|root,COG0292@2|Bacteria,1RGU2@1224|Proteobacteria,2U756@28211|Alphaproteobacteria,2JSNZ@204441|Rhodospirillales	204441|Rhodospirillales	J	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	rplT	-	-	ko:K02887	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L20
DYD3_k127_6992421_6	1297863.APJF01000006_gene1155	3.737e-28	114.0	COG0291@1|root,COG0291@2|Bacteria,1N6V4@1224|Proteobacteria,2UF6K@28211|Alphaproteobacteria,3K09F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL35 family	rpmI	-	-	ko:K02916	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L35p
DYD3_k127_6992421_3	1121033.AUCF01000008_gene5645	2.474e-99	334.0	COG1741@1|root,COG1741@2|Bacteria,1MWIP@1224|Proteobacteria,2TRHR@28211|Alphaproteobacteria,2JPVW@204441|Rhodospirillales	204441|Rhodospirillales	S	Belongs to the pirin family	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin,Pirin_C
DYD3_k127_6995953_4	1216976.AX27061_3597	1.932e-51	190.0	COG1262@1|root,COG1262@2|Bacteria,1Q227@1224|Proteobacteria,2VSH1@28216|Betaproteobacteria,3T4XF@506|Alcaligenaceae	28216|Betaproteobacteria	S	SapC	-	-	-	-	-	-	-	-	-	-	-	-	SapC
DYD3_k127_6995953_3	113355.CM001775_gene1785	4.49e-98	346.0	COG0652@1|root,COG2931@1|root,COG0652@2|Bacteria,COG2931@2|Bacteria,1G1I0@1117|Cyanobacteria	1117|Cyanobacteria	Q	Hemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	He_PIG,HemolysinCabind,Peptidase_M10_C
DYD3_k127_6995953_1	1123366.TH3_09014	5.983e-132	433.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,2JQ6A@204441|Rhodospirillales	204441|Rhodospirillales	S	cobalamin synthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	CobW_C,cobW
DYD3_k127_6995953_0	1279038.KB907338_gene807	2.787e-216	680.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,2JPTU@204441|Rhodospirillales	204441|Rhodospirillales	S	Tripartite tricarboxylate transporter TctA family	-	-	-	ko:K07793	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctA
DYD3_k127_6995953_5	1279038.KB907338_gene806	1.911e-15	85.0	2EA8W@1|root,334DC@2|Bacteria,1NFXE@1224|Proteobacteria,2UFST@28211|Alphaproteobacteria,2JUI8@204441|Rhodospirillales	204441|Rhodospirillales	S	Tripartite tricarboxylate transporter TctB family	-	-	-	-	-	-	-	-	-	-	-	-	TctB
DYD3_k127_6995953_2	1411123.JQNH01000001_gene1222	1.525e-108	362.0	COG3181@1|root,COG3181@2|Bacteria,1MXEX@1224|Proteobacteria,2TTSX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	MA20_15055	-	-	ko:K07795	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctC
DYD3_k127_6995953_7	288000.BBta_5175	2.585e-07	61.0	2F5Y8@1|root,33YGV@2|Bacteria,1MV4P@1224|Proteobacteria,2TUJF@28211|Alphaproteobacteria,3JWNU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_10390	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_6995953_6	1380355.JNIJ01000008_gene2022	9.747e-08	57.0	COG2114@1|root,COG4252@1|root,COG2114@2|Bacteria,COG4252@2|Bacteria,1MV1V@1224|Proteobacteria,2TU52@28211|Alphaproteobacteria,3JSN7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	CHASE2	-	-	4.6.1.1,4.6.1.2	ko:K01768,ko:K01769	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	CHASE2,Guanylate_cyc
DYD3_k127_700687_1	932213.SPM24T3_08304	1.033e-100	333.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,1RS1R@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	ABC-type dipeptide oligopeptide nickel transport systems, permease	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_700687_0	196367.JNFG01000199_gene3685	2.441e-106	352.0	COG1173@1|root,COG1173@2|Bacteria,1MU0P@1224|Proteobacteria,2VJAU@28216|Betaproteobacteria,1KCXY@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
DYD3_k127_700687_2	861208.AGROH133_10360	9.48e-19	88.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQNH@28211|Alphaproteobacteria,4B9C0@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_7009575_7	1380391.JIAS01000011_gene4728	2.688e-11	73.0	COG1335@1|root,COG1335@2|Bacteria,1RBPN@1224|Proteobacteria,2U8JS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_7009575_6	1173263.Syn7502_01444	1.259e-26	121.0	COG1073@1|root,COG1073@2|Bacteria,1G9XB@1117|Cyanobacteria	1117|Cyanobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
DYD3_k127_7009575_3	557599.MKAN_19570	2.419e-58	220.0	COG4427@1|root,COG4427@2|Bacteria,2HVQW@201174|Actinobacteria,232QG@1762|Mycobacteriaceae	201174|Actinobacteria	S	Uncharacterized protein conserved in bacteria (DUF2332)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2332
DYD3_k127_7009575_5	331869.BAL199_16888	2.665e-32	139.0	COG1279@1|root,COG1279@2|Bacteria,1QXRU@1224|Proteobacteria,2TXQR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	LysE type translocator	-	-	-	-	-	-	-	-	-	-	-	-	LysE
DYD3_k127_7009575_4	1110502.TMO_1329	6.369e-42	158.0	COG1522@1|root,COG1522@2|Bacteria,1N0DP@1224|Proteobacteria,2UC1F@28211|Alphaproteobacteria,2JTAZ@204441|Rhodospirillales	204441|Rhodospirillales	K	helix_turn_helix ASNC type	-	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_AsnC-type
DYD3_k127_7009575_1	1125973.JNLC01000010_gene1521	7.93e-127	412.0	COG0543@1|root,COG0543@2|Bacteria,1QTSK@1224|Proteobacteria,2TQNB@28211|Alphaproteobacteria,3JQTJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Oxidoreductase NAD-binding domain	fpr	-	1.18.1.2,1.19.1.1	ko:K00528	-	-	R10159	-	ko00000,ko01000	-	-	-	FAD_binding_6,NAD_binding_1
DYD3_k127_7009575_0	402881.Plav_2519	9.054e-190	604.0	COG3119@1|root,COG3119@2|Bacteria,1MV0B@1224|Proteobacteria,2TRI6@28211|Alphaproteobacteria,1JPX5@119043|Rhodobiaceae	28211|Alphaproteobacteria	P	Sulfatase	pehA	-	-	-	-	-	-	-	-	-	-	-	DUF4976,Sulfatase
DYD3_k127_7009575_2	1380394.JADL01000008_gene3548	1.224e-105	364.0	COG0526@1|root,COG0526@2|Bacteria,1QTY9@1224|Proteobacteria,2TW6Y@28211|Alphaproteobacteria,2JRIK@204441|Rhodospirillales	204441|Rhodospirillales	CO	Thioredoxin-like	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,NHL,Thioredoxin_8
DYD3_k127_7026973_4	1122137.AQXF01000003_gene2446	1.942e-35	144.0	COG2771@1|root,COG2771@2|Bacteria,1N6UR@1224|Proteobacteria,2U10Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Autoind_bind,GerE
DYD3_k127_7026973_5	1040986.ATYO01000022_gene2779	4.615e-28	121.0	COG3916@1|root,COG3916@2|Bacteria,1MXFA@1224|Proteobacteria,2U30F@28211|Alphaproteobacteria,43NIS@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	QT	Autoinducer synthase	-	-	2.3.1.228,2.3.1.229	ko:K18096	ko02024,map02024	-	-	-	ko00000,ko00001,ko01000	-	-	-	Autoind_synth
DYD3_k127_7026973_2	1380391.JIAS01000003_gene1860	4.276e-125	415.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TQXH@28211|Alphaproteobacteria,2JQXD@204441|Rhodospirillales	204441|Rhodospirillales	Q	Multicopper oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
DYD3_k127_7026973_0	1333998.M2A_1802	1.158e-141	460.0	COG0624@1|root,COG0624@2|Bacteria,1MW6G@1224|Proteobacteria,2TT0J@28211|Alphaproteobacteria,4BPCJ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	dapE	-	3.5.1.18	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R02734	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
DYD3_k127_7026973_1	1150626.PHAMO_280229	1.369e-132	429.0	COG2171@1|root,COG2171@2|Bacteria,1MU0Y@1224|Proteobacteria,2TS3H@28211|Alphaproteobacteria,2JPWR@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the transferase hexapeptide repeat family	dapD	-	2.3.1.117	ko:K00674	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R04365	RC00004,RC01136	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,Hexapep_2,THDPS_N_2
DYD3_k127_7026973_3	331869.BAL199_15027	3.667e-72	259.0	COG1011@1|root,COG1011@2|Bacteria,1PHPQ@1224|Proteobacteria,2TUDN@28211|Alphaproteobacteria,4BRF3@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	MA20_21845	-	-	ko:K07025	-	-	-	-	ko00000	-	-	-	HAD_2
DYD3_k127_7026973_6	1121861.KB899947_gene2426	5.111e-28	128.0	COG2199@1|root,COG2199@2|Bacteria,1PE80@1224|Proteobacteria,2V7DQ@28211|Alphaproteobacteria,2JXBH@204441|Rhodospirillales	204441|Rhodospirillales	T	Diguanylate cyclase, GGDEF domain	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
DYD3_k127_7031855_3	671143.DAMO_2026	4.607e-19	91.0	COG3668@1|root,COG3668@2|Bacteria	2|Bacteria	D	Plasmid stabilization system	spsF	-	-	ko:K19092	-	-	-	-	ko00000,ko02048	-	-	-	ParE_toxin
DYD3_k127_7031855_2	1380394.JADL01000002_gene1151	5.439e-20	93.0	COG3905@1|root,COG3905@2|Bacteria,1N39N@1224|Proteobacteria,2UGTC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7031855_0	1244869.H261_15922	3.442e-140	456.0	COG0150@1|root,COG0150@2|Bacteria,1MURG@1224|Proteobacteria,2TR6G@28211|Alphaproteobacteria,2JQ3Z@204441|Rhodospirillales	204441|Rhodospirillales	F	Phosphoribosylformylglycinamidine cyclo-ligase	purM	-	6.3.3.1	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04208	RC01100	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
DYD3_k127_7031855_1	441620.Mpop_2023	6.16e-33	134.0	COG0299@1|root,COG0299@2|Bacteria,1MWN1@1224|Proteobacteria,2TRY6@28211|Alphaproteobacteria,1JQZR@119045|Methylobacteriaceae	28211|Alphaproteobacteria	F	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate	purN	GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716	2.1.2.2	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	M00048	R04325,R04326	RC00026,RC00197,RC01128	ko00000,ko00001,ko00002,ko01000	-	-	-	Formyl_trans_N,YjbR
DYD3_k127_704672_3	1380391.JIAS01000003_gene1721	4.355e-84	289.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSI2@28211|Alphaproteobacteria,2JT62@204441|Rhodospirillales	204441|Rhodospirillales	V	ATPases associated with a variety of cellular activities	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_704672_5	414684.RC1_2055	1.521e-54	199.0	COG1309@1|root,COG1309@2|Bacteria,1MVQV@1224|Proteobacteria,2TRPA@28211|Alphaproteobacteria,2JTGB@204441|Rhodospirillales	204441|Rhodospirillales	K	Bacterial transcriptional repressor C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_11,TetR_N
DYD3_k127_704672_4	1163617.SCD_n00178	5.513e-63	229.0	COG1566@1|root,COG1566@2|Bacteria,1QUDS@1224|Proteobacteria,2WHE9@28216|Betaproteobacteria	28216|Betaproteobacteria	V	HlyD family	-	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3
DYD3_k127_704672_1	1040986.ATYO01000039_gene4546	1.916e-127	421.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TR2P@28211|Alphaproteobacteria,43GW0@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	V	ABC-type multidrug transport system ATPase component	MA20_09455	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD3_k127_704672_0	414684.RC1_2058	8.69e-147	489.0	COG0842@1|root,COG0842@2|Bacteria,1MW5R@1224|Proteobacteria,2TU59@28211|Alphaproteobacteria,2JQ52@204441|Rhodospirillales	204441|Rhodospirillales	V	ABC-2 family transporter protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD3_k127_704672_2	1415756.JQMY01000001_gene2622	3.517e-118	397.0	COG0623@1|root,COG0623@2|Bacteria,1MV05@1224|Proteobacteria,2TSU4@28211|Alphaproteobacteria,2PCSR@252301|Oceanicola	28211|Alphaproteobacteria	I	Enoyl- acyl-carrier-protein reductase NADH	fabI	-	1.3.1.10,1.3.1.9	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	M00083,M00572	R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671	RC00052,RC00076,RC00120	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD3_k127_704672_6	1121935.AQXX01000124_gene74	2.543e-22	101.0	COG3152@1|root,COG3152@2|Bacteria,1QECQ@1224|Proteobacteria,1SHDJ@1236|Gammaproteobacteria,1XPWC@135619|Oceanospirillales	135619|Oceanospirillales	S	Protein of unknown function (DUF805)	-	-	-	-	-	-	-	-	-	-	-	-	DUF805
DYD3_k127_7060443_5	1230476.C207_06807	7.852e-09	57.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,2TRVA@28211|Alphaproteobacteria,3JZ7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
DYD3_k127_7060443_1	402881.Plav_2701	7.446e-95	317.0	COG0061@1|root,COG0061@2|Bacteria,1MUBC@1224|Proteobacteria,2TSKN@28211|Alphaproteobacteria,1JN0T@119043|Rhodobiaceae	28211|Alphaproteobacteria	F	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP	nadK	-	2.7.1.23	ko:K00858	ko00760,ko01100,map00760,map01100	-	R00104	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	NAD_kinase
DYD3_k127_7060443_0	991905.SL003B_2810	2.631e-156	499.0	COG2896@1|root,COG2896@2|Bacteria,1MW3W@1224|Proteobacteria,2TQQP@28211|Alphaproteobacteria,4BPRJ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate	moaA	-	4.1.99.22	ko:K03639	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R09394	RC03420	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Mob_synth_C,Radical_SAM
DYD3_k127_7060443_3	1122132.AQYH01000010_gene3738	2.884e-38	149.0	2CBAE@1|root,32YK1@2|Bacteria,1PT14@1224|Proteobacteria,2UDRK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7060443_4	1122132.AQYH01000010_gene3737	2.575e-36	141.0	2CBFC@1|root,32RYI@2|Bacteria,1N0T4@1224|Proteobacteria,2UEZZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7060443_2	670307.HYPDE_38228	1.383e-41	156.0	COG0554@1|root,COG0554@2|Bacteria,1MUP7@1224|Proteobacteria,2TRD7@28211|Alphaproteobacteria,3N6KU@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	F	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	glpK	GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615	2.7.1.30	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	-	R00847	RC00002,RC00017	ko00000,ko00001,ko01000,ko04147	-	-	-	FGGY_C,FGGY_N
DYD3_k127_7067942_6	414684.RC1_2345	2.848e-34	147.0	COG1525@1|root,COG1525@2|Bacteria,1N0I9@1224|Proteobacteria,2UBYJ@28211|Alphaproteobacteria,2JTE8@204441|Rhodospirillales	204441|Rhodospirillales	L	COG1525 Micrococcal nuclease (thermonuclease) homologs	-	-	-	-	-	-	-	-	-	-	-	-	SNase
DYD3_k127_7067942_1	331869.BAL199_08838	3.027e-228	717.0	COG0138@1|root,COG0138@2|Bacteria,1MUDQ@1224|Proteobacteria,2TRMY@28211|Alphaproteobacteria,4BPIE@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Bifunctional purine biosynthesis protein PurH	purH	-	2.1.2.3,3.5.4.10	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	M00048	R01127,R04560	RC00026,RC00263,RC00456	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	AICARFT_IMPCHas,MGS
DYD3_k127_7067942_2	883080.HMPREF9697_02770	1.339e-140	460.0	COG2270@1|root,COG2270@2|Bacteria,1MWXB@1224|Proteobacteria,2TSCV@28211|Alphaproteobacteria,3JSCP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Major facilitator superfamily	MA20_25070	-	-	ko:K06902	ko04138,map04138	-	-	-	ko00000,ko00001,ko02000,ko04131	2.A.1.24,9.A.15.1	-	-	ATG22
DYD3_k127_7067942_0	1207063.P24_03246	0.0	1543.0	COG2902@1|root,COG2902@2|Bacteria,1MXNV@1224|Proteobacteria,2TS89@28211|Alphaproteobacteria,2JPCA@204441|Rhodospirillales	204441|Rhodospirillales	E	NAD-specific glutamate dehydrogenase	gdhA	-	1.4.1.2	ko:K15371	ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100	-	R00243	RC00006,RC02799	ko00000,ko00001,ko01000	-	-	-	Bac_GDH
DYD3_k127_7067942_7	78245.Xaut_0636	1.096e-15	81.0	2E1C2@1|root,32WRU@2|Bacteria,1RDU7@1224|Proteobacteria,2U76E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	MA20_34705	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7067942_4	1123399.AQVE01000009_gene3145	3.076e-89	306.0	COG5285@1|root,COG5285@2|Bacteria,1R54T@1224|Proteobacteria,1S34J@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	Phytanoyl-CoA dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
DYD3_k127_7067942_5	1432055.GLUCORHAEAF1_10745	1.504e-36	141.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,2JSZQ@204441|Rhodospirillales	204441|Rhodospirillales	K	transcriptional	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD3_k127_7067942_3	1121004.ATVC01000019_gene1851	6.996e-122	397.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2VHST@28216|Betaproteobacteria,2KPIH@206351|Neisseriales	206351|Neisseriales	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	2.6.1.113	ko:K12256	ko00330,ko01100,map00330,map01100	-	R08714	RC00008,RC00062	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_7069318_2	1125973.JNLC01000010_gene1897	4.603e-82	274.0	COG0069@1|root,COG0069@2|Bacteria,1MU7B@1224|Proteobacteria,2TRWC@28211|Alphaproteobacteria,3JWNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	glxD	-	2.1.1.21	ko:K22083	ko00680,ko01120,map00680,map01120	-	R01586	RC00554	ko00000,ko00001,ko01000	-	-	-	Glu_synthase
DYD3_k127_7069318_1	78245.Xaut_4698	1.42e-232	726.0	COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TTWE@28211|Alphaproteobacteria,3EYP6@335928|Xanthobacteraceae	28211|Alphaproteobacteria	E	Glutamine synthetase, catalytic domain	glnT	-	6.3.1.2,6.3.4.12	ko:K01915,ko:K01949	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_7069318_0	1125973.JNLC01000010_gene1910	1.401e-234	728.0	COG0665@1|root,COG0665@2|Bacteria,1MVM6@1224|Proteobacteria,2TRM7@28211|Alphaproteobacteria,3JUTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	soxB	-	1.5.3.1,1.5.99.5	ko:K00303,ko:K22084	ko00260,ko00680,ko01100,ko01120,map00260,map00680,map01100,map01120	-	R00609,R00610	RC00060,RC00190,RC00557	ko00000,ko00001,ko01000	-	-	-	DAO
DYD3_k127_7084143_3	1336249.JADW01000018_gene171	6.387e-43	159.0	COG1573@1|root,COG1573@2|Bacteria,1R9XV@1224|Proteobacteria,2TSWU@28211|Alphaproteobacteria,4B7IV@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Uracil-DNA glycosylase	-	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD3_k127_7084143_1	414684.RC1_3255	1.792e-77	273.0	COG2267@1|root,COG2267@2|Bacteria,1MWF5@1224|Proteobacteria,2TV6U@28211|Alphaproteobacteria,2JQ9F@204441|Rhodospirillales	204441|Rhodospirillales	I	Lysophospholipase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
DYD3_k127_7084143_2	1144307.PMI04_01324	3.652e-65	235.0	28HW8@1|root,2Z82A@2|Bacteria,1R856@1224|Proteobacteria,2UDAQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7084143_0	95619.PM1_0230230	7.068e-221	690.0	COG1231@1|root,COG1231@2|Bacteria,1MV82@1224|Proteobacteria,1S000@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	amine oxidase	iaaM	-	1.13.12.3	ko:K00466	ko00380,map00380	-	R00679	RC00213	ko00000,ko00001,ko01000	-	-	iJN746.PP_0383	Amino_oxidase
DYD3_k127_7088739_2	1245469.S58_43230	2.397e-139	447.0	COG1653@1|root,COG1653@2|Bacteria,1N8AS@1224|Proteobacteria,2U19M@28211|Alphaproteobacteria,3JTTK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1,SBP_bac_8
DYD3_k127_7088739_3	1121939.L861_11335	1.716e-21	100.0	COG0393@1|root,COG0393@2|Bacteria,1N109@1224|Proteobacteria,1S9H4@1236|Gammaproteobacteria,1XQAQ@135619|Oceanospirillales	135619|Oceanospirillales	S	excinuclease, ATPase subunit	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7088739_1	402881.Plav_1502	1.01e-184	590.0	COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2U3BS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	Belongs to the beta-ketoacyl-ACP synthases family	-	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
DYD3_k127_7088739_0	1125973.JNLC01000011_gene456	2.615e-257	803.0	COG0364@1|root,COG0364@2|Bacteria,1MUN0@1224|Proteobacteria,2TQXA@28211|Alphaproteobacteria,3JTX7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	zwf	-	1.1.1.363,1.1.1.49	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	M00004,M00006,M00008	R00835,R02736,R10907	RC00001,RC00066	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	G6PD_C,G6PD_N
DYD3_k127_7088739_4	1125973.JNLC01000011_gene457	0.0002378	45.0	COG0363@1|root,COG0363@2|Bacteria,1R5K6@1224|Proteobacteria,2U77K@28211|Alphaproteobacteria,3JSU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	pgl	-	2.7.1.12,3.1.1.31	ko:K00851,ko:K01057	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R01737,R02035	RC00002,RC00017,RC00537	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucosamine_iso
DYD3_k127_7092179_0	414684.RC1_2425	3.962e-239	755.0	COG0326@1|root,COG0326@2|Bacteria,1MUUE@1224|Proteobacteria,2TQRS@28211|Alphaproteobacteria,2JPFZ@204441|Rhodospirillales	204441|Rhodospirillales	O	Molecular chaperone. Has ATPase activity	htpG	-	-	ko:K04079	ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418	-	-	-	ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147	-	-	-	HATPase_c,HATPase_c_3,HSP90
DYD3_k127_7092179_4	291112.PAU_01136	2.492e-12	73.0	2DQ2E@1|root,334G4@2|Bacteria,1NAXR@1224|Proteobacteria,1SF7B@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7092179_2	1408418.JNJH01000008_gene2600	4.465e-141	463.0	COG0154@1|root,COG0154@2|Bacteria,1MW3Z@1224|Proteobacteria,2TS56@28211|Alphaproteobacteria,2JR2A@204441|Rhodospirillales	204441|Rhodospirillales	J	Amidase	-	-	-	-	-	-	-	-	-	-	-	-	Amidase
DYD3_k127_7092179_3	768066.HELO_1290	3.01e-120	393.0	COG0583@1|root,COG0583@2|Bacteria,1QYAP@1224|Proteobacteria,1RYE8@1236|Gammaproteobacteria,1XIPN@135619|Oceanospirillales	135619|Oceanospirillales	K	transcriptional regulator	-	-	-	ko:K21699	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_7092179_1	1150469.RSPPHO_00765	8.348e-205	642.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,2JPRX@204441|Rhodospirillales	204441|Rhodospirillales	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	2.6.1.18	ko:K00822	ko00280,ko00410,ko00640,ko01100,map00280,map00410,map00640,map01100	-	R00907,R04187	RC00008,RC00062,RC00160	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
DYD3_k127_7094506_0	388051.AUFE01000026_gene5215	2.605e-272	871.0	COG3447@1|root,COG3852@1|root,COG5001@1|root,COG3447@2|Bacteria,COG3852@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2VJMN@28216|Betaproteobacteria,1K063@119060|Burkholderiaceae	28216|Betaproteobacteria	T	domain protein	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,HAMP,MASE1,PAS_3,PAS_4
DYD3_k127_7094506_1	883078.HMPREF9695_02641	2.975e-156	502.0	COG4292@1|root,COG4292@2|Bacteria,1MW5F@1224|Proteobacteria,2TQP4@28211|Alphaproteobacteria,3JQWR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial low temperature requirement A protein (LtrA)	ltrA	-	-	-	-	-	-	-	-	-	-	-	LtrA
DYD3_k127_7094506_3	1120983.KB894570_gene1503	3.613e-07	63.0	2AHGI@1|root,317TZ@2|Bacteria,1Q6P5@1224|Proteobacteria,2VCSG@28211|Alphaproteobacteria,1JQC8@119043|Rhodobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7094506_2	1408418.JNJH01000022_gene1756	1.457e-122	396.0	COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,2TS07@28211|Alphaproteobacteria,2JPIQ@204441|Rhodospirillales	204441|Rhodospirillales	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	-	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD3_k127_7105367_1	1089552.KI911559_gene3249	8.37e-11	68.0	COG3197@1|root,COG3197@2|Bacteria,1NG90@1224|Proteobacteria,2UJFJ@28211|Alphaproteobacteria,2JTTG@204441|Rhodospirillales	204441|Rhodospirillales	P	cytochrome oxidase maturation protein	-	-	-	-	-	-	-	-	-	-	-	-	FixS
DYD3_k127_7105367_0	1244869.H261_16595	1.477e-183	591.0	COG2217@1|root,COG2608@1|root,COG2217@2|Bacteria,COG2608@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,2JQKA@204441|Rhodospirillales	204441|Rhodospirillales	P	COG2217 Cation transport ATPase	-	-	3.6.3.4	ko:K01533	-	-	R00086	RC00002	ko00000,ko01000	3.A.3.5	-	-	ATPase-cat_bd,E1-E2_ATPase,HMA,Hydrolase
DYD3_k127_7107509_0	1187851.A33M_0615	4.648e-150	481.0	COG0536@1|root,COG0536@2|Bacteria,1MUGZ@1224|Proteobacteria,2TR5I@28211|Alphaproteobacteria,3FCR8@34008|Rhodovulum	28211|Alphaproteobacteria	S	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control	obg	-	-	ko:K03979	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	GTP1_OBG,MMR_HSR1
DYD3_k127_7107509_1	1110502.TMO_2968	1.923e-145	470.0	COG0263@1|root,COG0263@2|Bacteria,1MUBG@1224|Proteobacteria,2TRKB@28211|Alphaproteobacteria,2JPD3@204441|Rhodospirillales	204441|Rhodospirillales	E	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate	proB	-	2.7.2.11	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	M00015	R00239	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase,PUA
DYD3_k127_7107509_2	1030157.AFMP01000062_gene3496	3.125e-13	73.0	COG0014@1|root,COG0014@2|Bacteria,1MUGJ@1224|Proteobacteria,2TS83@28211|Alphaproteobacteria,2K0DR@204457|Sphingomonadales	204457|Sphingomonadales	E	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	proA	-	1.2.1.41	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	M00015	R03313	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_7113856_11	1244869.H261_19743	4.891e-35	143.0	COG0037@1|root,COG0037@2|Bacteria,1MU85@1224|Proteobacteria,2TRK1@28211|Alphaproteobacteria,2JPJP@204441|Rhodospirillales	204441|Rhodospirillales	J	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine	tilS	-	6.3.4.19	ko:K04075	-	-	R09597	RC02633,RC02634	ko00000,ko01000,ko03016	-	-	-	ATP_bind_3
DYD3_k127_7113856_9	1121033.AUCF01000041_gene491	1.325e-40	162.0	COG1729@1|root,COG1729@2|Bacteria,1MUSV@1224|Proteobacteria,2U6ZQ@28211|Alphaproteobacteria,2JS5C@204441|Rhodospirillales	204441|Rhodospirillales	D	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division	cpoB	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_6,TolA_bind_tri
DYD3_k127_7113856_7	402881.Plav_2123	1.762e-45	176.0	COG2885@1|root,COG2885@2|Bacteria,1MZTV@1224|Proteobacteria,2U758@28211|Alphaproteobacteria,1JNYD@119043|Rhodobiaceae	28211|Alphaproteobacteria	M	OmpA family	pal	-	-	ko:K03640	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	OmpA
DYD3_k127_7113856_0	1207063.P24_18426	1.338e-182	580.0	COG0823@1|root,COG0823@2|Bacteria,1MV09@1224|Proteobacteria,2TR03@28211|Alphaproteobacteria,2JQ9G@204441|Rhodospirillales	204441|Rhodospirillales	U	Involved in the TonB-independent uptake of proteins	tolB	-	-	ko:K03641	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	PD40,TolB_N
DYD3_k127_7113856_12	1380380.JIAX01000008_gene2243	2.815e-31	125.0	COG2827@1|root,COG2827@2|Bacteria,1MZME@1224|Proteobacteria,2UCNX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	PFAM Excinuclease ABC, C subunit domain protein	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
DYD3_k127_7113856_13	414684.RC1_1801	5.188e-21	104.0	COG3064@1|root,COG3064@2|Bacteria,1QVP8@1224|Proteobacteria,2TWJ5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7113856_8	1207063.P24_18666	2.287e-44	165.0	COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,2UA46@28211|Alphaproteobacteria,2JSUT@204441|Rhodospirillales	204441|Rhodospirillales	U	Biopolymer transport protein	-	-	-	ko:K03559,ko:K03560	-	-	-	-	ko00000,ko02000	1.A.30.2.1,1.A.30.2.2	-	-	ExbD
DYD3_k127_7113856_3	1380394.JADL01000003_gene5054	2.131e-95	318.0	COG0811@1|root,COG0811@2|Bacteria,1NCWW@1224|Proteobacteria,2TQXQ@28211|Alphaproteobacteria,2JPCG@204441|Rhodospirillales	204441|Rhodospirillales	U	COG0811 Biopolymer transport proteins	tolQ	-	-	ko:K03562	ko01120,map01120	-	-	-	ko00000,ko02000	1.A.30.2.2	-	-	MotA_ExbB
DYD3_k127_7113856_10	1282876.BAOK01000001_gene1072	3.804e-37	146.0	COG0824@1|root,COG0824@2|Bacteria,1MZH6@1224|Proteobacteria,2UBYM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	thioesterase'	ybgC	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT
DYD3_k127_7113856_1	1123355.JHYO01000013_gene1126	1.332e-161	515.0	COG2255@1|root,COG2255@2|Bacteria,1MU38@1224|Proteobacteria,2TQNG@28211|Alphaproteobacteria,36XA0@31993|Methylocystaceae	28211|Alphaproteobacteria	L	Holliday junction DNA helicase ruvB C-terminus	ruvB	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03551	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvB_C,RuvB_N
DYD3_k127_7113856_6	876269.ARWA01000001_gene469	3.195e-57	214.0	COG0632@1|root,COG0632@2|Bacteria,1MWJR@1224|Proteobacteria,2TSKM@28211|Alphaproteobacteria,3NB17@45404|Beijerinckiaceae	28211|Alphaproteobacteria	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	ruvA	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03550	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HHH_5,RuvA_C,RuvA_N
DYD3_k127_7113856_5	1121028.ARQE01000004_gene1399	8.5e-59	208.0	COG0817@1|root,COG0817@2|Bacteria,1MUJI@1224|Proteobacteria,2U70Z@28211|Alphaproteobacteria,2PJMC@255475|Aurantimonadaceae	28211|Alphaproteobacteria	L	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	ruvC	GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576	3.1.22.4	ko:K01159	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvC
DYD3_k127_7113856_2	1125973.JNLC01000013_gene3870	7.138e-106	351.0	COG0217@1|root,COG0217@2|Bacteria,1MW3X@1224|Proteobacteria,2TRSK@28211|Alphaproteobacteria,3JRDF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulatory protein	MA20_17930	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	Transcrip_reg
DYD3_k127_7113856_4	1282876.BAOK01000001_gene1064	9.327e-69	235.0	COG1692@1|root,COG1692@2|Bacteria,1MW12@1224|Proteobacteria,2TS4S@28211|Alphaproteobacteria,4BP82@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	YmdB-like protein	MA20_17970	GO:0003674,GO:0003824,GO:0004112,GO:0004113,GO:0008081,GO:0016787,GO:0016788,GO:0042578	-	ko:K09769	-	-	-	-	ko00000	-	-	-	YmdB
DYD3_k127_7118113_2	1121438.JNJA01000031_gene1915	3.097e-11	67.0	2DRQ5@1|root,33CJP@2|Bacteria,1NC87@1224|Proteobacteria,436WW@68525|delta/epsilon subdivisions,2X1M1@28221|Deltaproteobacteria,2MF9Y@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	Cysteine rich repeat	-	-	-	-	-	-	-	-	-	-	-	-	Cys_rich_FGFR
DYD3_k127_7118113_3	264198.Reut_A0388	1.383e-07	62.0	2EW11@1|root,33PED@2|Bacteria,1NJMS@1224|Proteobacteria,2W1A9@28216|Betaproteobacteria,1K3DP@119060|Burkholderiaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7118113_0	1038858.AXBA01000006_gene812	1.36e-94	318.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TTKG@28211|Alphaproteobacteria,3EYHQ@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	Two component transcriptional regulator, winged helix family	ompR	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_7118113_1	1125973.JNLC01000014_gene2345	1.928e-94	336.0	COG0642@1|root,COG2205@2|Bacteria,1MUAK@1224|Proteobacteria,2U2UG@28211|Alphaproteobacteria,3JWWV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c
DYD3_k127_712506_3	1211115.ALIQ01000244_gene3724	5.28e-105	349.0	COG0583@1|root,COG0583@2|Bacteria,1MWVB@1224|Proteobacteria,2TQXV@28211|Alphaproteobacteria,3NBZ3@45404|Beijerinckiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_712506_1	1207063.P24_00350	3.605e-145	481.0	COG3263@1|root,COG3263@2|Bacteria,1MVKV@1224|Proteobacteria,2TSZJ@28211|Alphaproteobacteria,2JPJZ@204441|Rhodospirillales	204441|Rhodospirillales	P	COG3263 NhaP-type Na H and K H antiporters with a unique C-terminal domain	-	-	-	ko:K11105	-	-	-	-	ko00000,ko02000	2.A.36.6	-	-	CorC_HlyC,Na_H_Exchanger,TrkA_C
DYD3_k127_712506_4	1417296.U879_11855	2.283e-91	311.0	COG0598@1|root,COG0598@2|Bacteria,1MWMP@1224|Proteobacteria,2TQQD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	PFAM Mg2 transporter protein CorA family protein	corA	-	-	ko:K03284	-	-	-	-	ko00000,ko02000	1.A.35.1,1.A.35.3	-	-	CorA
DYD3_k127_712506_5	414684.RC1_3196	7.565e-85	288.0	COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,2TSUR@28211|Alphaproteobacteria,2JPZY@204441|Rhodospirillales	204441|Rhodospirillales	V	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin	uppP	-	3.6.1.27	ko:K06153	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	BacA
DYD3_k127_712506_2	314225.ELI_03475	1.085e-141	454.0	COG0596@1|root,COG0596@2|Bacteria,1MUSF@1224|Proteobacteria,2TSK5@28211|Alphaproteobacteria,2JZV9@204457|Sphingomonadales	204457|Sphingomonadales	S	Alpha/beta hydrolase family	-	-	3.8.1.5	ko:K01563	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05284,R05367,R05368,R05369,R05370,R07669,R07670	RC01317,RC01340,RC01341,RC02013	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_712506_0	587753.EY04_10030	7.177e-179	578.0	COG2931@1|root,COG2931@2|Bacteria,1R94A@1224|Proteobacteria,1RR8E@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	calcium- and calmodulin-responsive adenylate cyclase activity	-	-	-	-	-	-	-	-	-	-	-	-	HemolysinCabind,SASA
DYD3_k127_7125457_3	1121033.AUCF01000042_gene2677	5.755e-64	227.0	COG3713@1|root,COG3713@2|Bacteria,1N0BC@1224|Proteobacteria,2U7QE@28211|Alphaproteobacteria,2JU0U@204441|Rhodospirillales	204441|Rhodospirillales	M	MltA-interacting protein MipA	-	-	-	-	-	-	-	-	-	-	-	-	MipA
DYD3_k127_7125457_2	1121033.AUCF01000042_gene2675	3.428e-107	366.0	COG0745@1|root,COG0745@2|Bacteria,1NCKY@1224|Proteobacteria,2TRPQ@28211|Alphaproteobacteria,2JYK4@204441|Rhodospirillales	204441|Rhodospirillales	T	Transcriptional regulatory protein, C terminal	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
DYD3_k127_7125457_0	1121033.AUCF01000042_gene2676	6.88e-135	452.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,2TVIP@28211|Alphaproteobacteria,2JRYV@204441|Rhodospirillales	204441|Rhodospirillales	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	2CSK_N,HATPase_c,HisKA
DYD3_k127_7125457_1	243233.MCA2608	6.298e-125	432.0	COG3264@1|root,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,1RQW8@1236|Gammaproteobacteria,1XGZI@135618|Methylococcales	135618|Methylococcales	M	Protein of unknown function (DUF3772)	-	-	-	ko:K05802	-	-	-	-	ko00000,ko02000	1.A.23.1.1	-	-	DUF3772,MS_channel
DYD3_k127_7125457_5	1282876.BAOK01000001_gene3245	2.058e-39	156.0	COG2050@1|root,COG2050@2|Bacteria,1RHK6@1224|Proteobacteria,2U72Z@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	protein, possibly involved in aromatic compounds catabolism	MA20_04725	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD3_k127_7125457_4	1333998.M2A_2074	4.971e-44	165.0	COG2050@1|root,COG2050@2|Bacteria,1RITB@1224|Proteobacteria,2U58S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	protein possibly involved in aromatic compounds catabolism	-	-	-	-	-	-	-	-	-	-	-	-	4HBT,4HBT_3
DYD3_k127_7125457_6	1380391.JIAS01000001_gene2802	1.876e-12	67.0	COG2941@1|root,COG2941@2|Bacteria,1RAK4@1224|Proteobacteria,2U85I@28211|Alphaproteobacteria,2JSA9@204441|Rhodospirillales	204441|Rhodospirillales	H	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol	coq7	-	-	ko:K06134	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00128	R04984,R08775	RC01254	ko00000,ko00001,ko00002,ko01000	-	-	-	COQ7
DYD3_k127_7127599_0	172088.AUGA01000039_gene4511	5.29e-234	732.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TVC3@28211|Alphaproteobacteria,3JXW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	COG3243 Poly(3-hydroxyalkanoate) synthetase	-	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1,PhaC_N
DYD3_k127_7127599_2	1297865.APJD01000003_gene6246	4.011e-97	334.0	COG2267@1|root,COG2267@2|Bacteria,1N03H@1224|Proteobacteria,2U2EH@28211|Alphaproteobacteria,3JV1A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	3.1.1.76	ko:K22250	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
DYD3_k127_7127599_1	381666.H16_B0638	1.964e-135	444.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,2VNPR@28216|Betaproteobacteria,1JZST@119060|Burkholderiaceae	28216|Betaproteobacteria	I	acyl-CoA dehydrogenase	-	-	1.14.14.12	ko:K16047	ko00984,ko01100,ko01120,map00984,map01100,map01120	-	R09819	RC00236	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
DYD3_k127_7127599_3	1136138.JH604622_gene2269	3.951e-11	64.0	COG1018@1|root,COG1018@2|Bacteria,1MY2Q@1224|Proteobacteria,1RQZ8@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	kshB	-	1.14.13.142	ko:K02613,ko:K15983	ko00360,ko00984,ko01100,ko01120,map00360,map00984,map01100,map01120	-	R09838,R09860	RC02690,RC02691	ko00000,ko00001,ko01000	-	-	-	FAD_binding_6,Fer2,MOSC,MOSC_N,NAD_binding_1
DYD3_k127_7137725_1	1125973.JNLC01000015_gene3193	1.495e-80	278.0	COG3712@1|root,COG3712@2|Bacteria,1RHFD@1224|Proteobacteria,2U9ER@28211|Alphaproteobacteria,3K6CV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	PT	Domain of unknown function (DUF4880)	-	-	-	ko:K07165	-	-	-	-	ko00000	-	-	-	DUF4880,DUF4974,FecR
DYD3_k127_7137725_0	1150626.PHAMO_270178	1.684e-261	830.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,2JQQK@204441|Rhodospirillales	204441|Rhodospirillales	P	siderophore receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,STN,TonB_dep_Rec
DYD3_k127_7139101_0	1430440.MGMSRv2_1583	6.034e-272	878.0	COG0204@1|root,COG0318@1|root,COG0477@1|root,COG0204@2|Bacteria,COG0318@2|Bacteria,COG2814@2|Bacteria,1MWDY@1224|Proteobacteria,2TTGI@28211|Alphaproteobacteria,2JQXB@204441|Rhodospirillales	204441|Rhodospirillales	I	Phosphate acyltransferases	-	-	2.3.1.40,6.2.1.20	ko:K05939	ko00071,ko00564,map00071,map00564	-	R01406,R04864	RC00014,RC00039,RC00041	ko00000,ko00001,ko01000	-	-	-	AMP-binding,Acyltransferase,MFS_1
DYD3_k127_7139101_13	1123276.KB893261_gene4397	8.43e-39	152.0	290ZW@1|root,2ZNMK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7139101_4	1205680.CAKO01000037_gene1176	1.866e-118	393.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,2JR5W@204441|Rhodospirillales	204441|Rhodospirillales	E	Periplasmic binding protein	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
DYD3_k127_7139101_1	411684.HPDFL43_01340	6.413e-174	560.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,43QXW@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_27905	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_7139101_10	1381123.AYOD01000035_gene3677	3.406e-68	241.0	COG2186@1|root,COG2186@2|Bacteria,1R5KH@1224|Proteobacteria,2TSJE@28211|Alphaproteobacteria,43PFQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_7139101_5	420324.KI912005_gene8727	4.841e-112	362.0	COG0262@1|root,COG0262@2|Bacteria,1R7YJ@1224|Proteobacteria,2U43B@28211|Alphaproteobacteria,1JUQ8@119045|Methylobacteriaceae	28211|Alphaproteobacteria	H	RibD C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	RibD_C
DYD3_k127_7139101_8	1528106.JRJE01000032_gene2661	2.596e-82	280.0	COG0730@1|root,COG0730@2|Bacteria,1MXNM@1224|Proteobacteria,2TW57@28211|Alphaproteobacteria,2JSI4@204441|Rhodospirillales	204441|Rhodospirillales	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
DYD3_k127_7139101_14	1131814.JAFO01000001_gene3383	7.409e-38	143.0	COG0236@1|root,COG0236@2|Bacteria,1RI81@1224|Proteobacteria,2U9I5@28211|Alphaproteobacteria,3EZR1@335928|Xanthobacteraceae	28211|Alphaproteobacteria	IQ	Phosphopantetheine attachment site	acpXL	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	-	-	-	-	-	-	-	-	-	PP-binding
DYD3_k127_7139101_12	1125973.JNLC01000002_gene2036	5.396e-47	173.0	COG0764@1|root,COG0764@2|Bacteria,1RJND@1224|Proteobacteria,2UA4J@28211|Alphaproteobacteria,3JYDB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	FabA-like domain	-	-	4.2.1.59	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121	RC00831,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FabA
DYD3_k127_7139101_6	319003.Bra1253DRAFT_01492	7.228e-91	314.0	COG0304@1|root,COG0304@2|Bacteria,1MXZ7@1224|Proteobacteria,2TVEB@28211|Alphaproteobacteria,3JQQT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Beta-ketoacyl synthase, N-terminal domain	fabF2	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ketoacyl-synt
DYD3_k127_7139101_2	1510531.JQJJ01000004_gene4588	5.173e-163	524.0	COG0304@1|root,COG0304@2|Bacteria,1PVH9@1224|Proteobacteria,2TSMB@28211|Alphaproteobacteria,3JR29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the beta-ketoacyl-ACP synthases family	fabF3	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
DYD3_k127_7139101_11	426117.M446_4858	7.481e-57	211.0	COG0300@1|root,COG0300@2|Bacteria,1R06Y@1224|Proteobacteria,2TYKW@28211|Alphaproteobacteria,1JYZY@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	NAD dependent epimerase/dehydratase family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD3_k127_7139101_3	631454.N177_2710	1.03e-127	418.0	COG0604@1|root,COG0604@2|Bacteria,1MUTW@1224|Proteobacteria,2U1CB@28211|Alphaproteobacteria,1JP1A@119043|Rhodobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	adh	-	1.1.1.1	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_7139101_15	1449049.JONW01000002_gene2529	8.229e-38	149.0	2EE7N@1|root,33827@2|Bacteria,1PYHU@1224|Proteobacteria,2UU3P@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7139101_9	765698.Mesci_0353	3.867e-77	264.0	COG3485@1|root,COG3485@2|Bacteria,1MV6K@1224|Proteobacteria,2TUS4@28211|Alphaproteobacteria,43JU4@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	Q	Dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Dioxygenase_C
DYD3_k127_7139101_17	1123355.JHYO01000026_gene236	1.056e-19	100.0	2C9CJ@1|root,32RP4@2|Bacteria,1MZ6X@1224|Proteobacteria,2UC82@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_7139101_7	1187851.A33M_1533	1.805e-84	289.0	COG1281@1|root,COG1281@2|Bacteria,1MUMU@1224|Proteobacteria,2TTUR@28211|Alphaproteobacteria,3FD6M@34008|Rhodovulum	28211|Alphaproteobacteria	O	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress	hslO	-	-	ko:K04083	-	-	-	-	ko00000,ko03110	-	-	-	HSP33
DYD3_k127_7139101_16	1298867.AUES01000005_gene185	2.95e-28	113.0	COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,2TR81@28211|Alphaproteobacteria,3JS5V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	argF	GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.1.3.3	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	M00029,M00844	R01398	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	OTCace,OTCace_N
DYD3_k127_7143960_2	591159.ACEZ01000045_gene2912	2.952e-11	74.0	COG1020@1|root,COG1020@2|Bacteria,2IGEX@201174|Actinobacteria	201174|Actinobacteria	Q	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21,PP-binding
DYD3_k127_7143960_1	1150626.PHAMO_40162	2.394e-128	424.0	COG1322@1|root,COG1322@2|Bacteria,1MWHV@1224|Proteobacteria,2TTX6@28211|Alphaproteobacteria,2JPI9@204441|Rhodospirillales	204441|Rhodospirillales	S	RmuC family	rmuC	-	-	ko:K09760	-	-	-	-	ko00000	-	-	-	RmuC
DYD3_k127_7143960_0	1121106.JQKB01000116_gene5363	6.251e-155	498.0	COG2141@1|root,COG2141@2|Bacteria,1NKS6@1224|Proteobacteria,2TT87@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	1.14.13.107	ko:K14733	ko00903,map00903	-	R06398,R09385,R09389,R09393	RC01506	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
DYD3_k127_7156562_6	1192034.CAP_2937	1.238e-28	117.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,43AK0@68525|delta/epsilon subdivisions,2X60A@28221|Deltaproteobacteria,2YXI8@29|Myxococcales	28221|Deltaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_7156562_9	316055.RPE_4492	2.44e-14	78.0	COG0596@1|root,COG0596@2|Bacteria,1MUVB@1224|Proteobacteria,2TREP@28211|Alphaproteobacteria,3JSR6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_7156562_3	1218074.BAXZ01000024_gene4440	1.879e-72	246.0	COG0662@1|root,COG0662@2|Bacteria,1RFQ6@1224|Proteobacteria,2VRM2@28216|Betaproteobacteria,1K77A@119060|Burkholderiaceae	28216|Betaproteobacteria	G	PFAM Cupin 2 conserved barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,Cupin_2
DYD3_k127_7156562_0	1333998.M2A_0511	0.0	1272.0	COG0525@1|root,COG0525@2|Bacteria,1MV7B@1224|Proteobacteria,2TS9E@28211|Alphaproteobacteria,4BPCE@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner	valS	GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.9	ko:K01873	ko00970,map00970	M00359,M00360	R03665	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1
DYD3_k127_7156562_8	1161401.ASJA01000018_gene1179	7.068e-20	98.0	COG3827@1|root,COG3827@2|Bacteria,1MX61@1224|Proteobacteria,2TSG8@28211|Alphaproteobacteria,43YDD@69657|Hyphomonadaceae	28211|Alphaproteobacteria	S	protein conserved in bacteria	-	-	-	ko:K09991	-	-	-	-	ko00000	-	-	-	DUF2497
DYD3_k127_7156562_1	1282876.BAOK01000001_gene2014	1.035e-111	377.0	COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,4BQ21@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	tolC	-	-	ko:K12340	ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133	M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko02044	1.B.17,2.A.6.2	-	-	OEP
DYD3_k127_7156562_7	414684.RC1_1159	4.482e-26	113.0	COG0607@1|root,COG0607@2|Bacteria,1Q2JH@1224|Proteobacteria,2UHT3@28211|Alphaproteobacteria,2JUEZ@204441|Rhodospirillales	204441|Rhodospirillales	P	Rhodanese Homology Domain	-	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
DYD3_k127_7156562_4	1121033.AUCF01000001_gene2231	6.252e-66	231.0	COG2518@1|root,COG2518@2|Bacteria,1RD6S@1224|Proteobacteria,2U704@28211|Alphaproteobacteria,2JS3S@204441|Rhodospirillales	204441|Rhodospirillales	O	COG2518 Protein-L-isoaspartate carboxylmethyltransferase	pcm	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	PCMT
DYD3_k127_7156562_5	1082933.MEA186_15507	2.209e-64	221.0	COG2329@1|root,COG2329@2|Bacteria,1RE6Q@1224|Proteobacteria,2U7AX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
DYD3_k127_7156562_2	1082933.MEA186_15512	2.796e-77	260.0	COG1846@1|root,COG1846@2|Bacteria,1MZXE@1224|Proteobacteria,2U7TP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	MarR family	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
DYD3_k127_7179265_3	1411123.JQNH01000001_gene3902	2.008e-83	290.0	COG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,2TUSP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	COG4942 Membrane-bound metallopeptidase	filA	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD3_k127_7179265_0	991905.SL003B_4155	1.445e-185	589.0	COG0793@1|root,COG0793@2|Bacteria,1MU39@1224|Proteobacteria,2TRW2@28211|Alphaproteobacteria,4BPF3@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	Belongs to the peptidase S41A family	ctpA	-	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ_2,Peptidase_S41
DYD3_k127_7179265_2	1411123.JQNH01000001_gene3904	1.83e-86	299.0	COG2861@1|root,COG2861@2|Bacteria,1N3JP@1224|Proteobacteria,2TUFD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	ko:K09798	-	-	-	-	ko00000	-	-	-	Polysacc_deac_2
DYD3_k127_7179265_4	670307.HYPDE_40913	4.63e-64	223.0	COG1051@1|root,COG1051@2|Bacteria,1QU0T@1224|Proteobacteria,2TW25@28211|Alphaproteobacteria,3N9IS@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	F	Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage	nudH	-	-	ko:K08311	ko03018,map03018	-	R10816	RC00002	ko00000,ko00001,ko01000,ko03019	-	-	-	NUDIX
DYD3_k127_7179265_1	402881.Plav_1467	8.902e-113	370.0	COG1633@1|root,COG1633@2|Bacteria,1R5XX@1224|Proteobacteria,2TTCD@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)	-	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase_2,Rubrerythrin
DYD3_k127_7184414_0	13690.CP98_03237	1.086e-137	444.0	COG1804@1|root,COG1804@2|Bacteria,1MVY1@1224|Proteobacteria,2TVJ9@28211|Alphaproteobacteria,2K2BY@204457|Sphingomonadales	204457|Sphingomonadales	C	acyl-CoA transferases carnitine dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
DYD3_k127_7184414_1	1298867.AUES01000038_gene851	2.266e-82	281.0	COG0625@1|root,COG0625@2|Bacteria,1PA0Q@1224|Proteobacteria,2TVIC@28211|Alphaproteobacteria,3JVHC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	MA20_22970	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
DYD3_k127_7184414_2	1230476.C207_02367	4.518e-46	169.0	COG0183@1|root,COG0183@2|Bacteria,1QUU1@1224|Proteobacteria,2U0EW@28211|Alphaproteobacteria,3JR6T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_16420	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	-
DYD3_k127_759668_3	1500301.JQMF01000024_gene1973	9.795e-18	89.0	COG3311@1|root,COG3311@2|Bacteria,1PPUR@1224|Proteobacteria,2V5FR@28211|Alphaproteobacteria,4BHZC@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_17
DYD3_k127_759668_1	1500301.JQMF01000024_gene1974	3.873e-45	171.0	COG1569@1|root,COG1569@2|Bacteria,1RCZE@1224|Proteobacteria,2U5DQ@28211|Alphaproteobacteria,4BDRI@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	PIN domain	-	-	-	-	-	-	-	-	-	-	-	-	PIN_3
DYD3_k127_759668_0	1547437.LL06_14750	1.777e-97	327.0	COG1335@1|root,COG1335@2|Bacteria,1REAB@1224|Proteobacteria,2UPNI@28211|Alphaproteobacteria,43J8R@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
DYD3_k127_759668_2	331869.BAL199_02644	2.359e-21	95.0	COG3814@1|root,COG3814@2|Bacteria,1N1FE@1224|Proteobacteria,2U7H9@28211|Alphaproteobacteria,4BQN9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	Stringent starvation protein B	MA20_02250	-	-	ko:K09985	-	-	-	-	ko00000	-	-	-	SspB
DYD3_k127_759668_4	941449.dsx2_2178	2.361e-10	63.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,42N6N@68525|delta/epsilon subdivisions,2WJ1W@28221|Deltaproteobacteria,2M833@213115|Desulfovibrionales	28221|Deltaproteobacteria	C	PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit	nuoF-2	-	1.12.1.3,1.6.5.3	ko:K00334,ko:K00335,ko:K18331	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	2Fe-2S_thioredx,Complex1_51K,Fer4,NADH_4Fe-4S,SLBB
DYD3_k127_761023_2	1207063.P24_11425	1.355e-70	240.0	COG0105@1|root,COG0105@2|Bacteria,1R9ZA@1224|Proteobacteria,2U5CS@28211|Alphaproteobacteria,2JRR3@204441|Rhodospirillales	204441|Rhodospirillales	F	Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate	ndk	-	2.7.4.6	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	M00049,M00050,M00052,M00053	R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895	RC00002	ko00000,ko00001,ko00002,ko01000,ko04131	-	-	-	NDK
DYD3_k127_761023_0	1122929.KB908236_gene379	1.889e-203	655.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TQRZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	COG0488 ATPase components of ABC transporters with duplicated ATPase domains	yheS	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	ko:K06158	-	-	-	-	ko00000,ko03012	-	-	-	ABC_tran,ABC_tran_CTD,ABC_tran_Xtn
DYD3_k127_761023_1	1411123.JQNH01000001_gene1069	1.216e-132	430.0	COG0002@1|root,COG0002@2|Bacteria,1MVJ6@1224|Proteobacteria,2TRMT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde	argC	-	1.2.1.38	ko:K00145	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R03443	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh
DYD3_k127_761023_3	1120983.KB894575_gene674	3.213e-29	120.0	COG1194@1|root,COG1194@2|Bacteria,1MUD4@1224|Proteobacteria,2TQVX@28211|Alphaproteobacteria,1JN1I@119043|Rhodobiaceae	28211|Alphaproteobacteria	L	FES	mutY	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	-	ko:K03575	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	EndIII_4Fe-2S,HhH-GPD,NUDIX_4
DYD3_k127_785334_4	426117.M446_0761	1.567e-33	134.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,1JUVW@119045|Methylobacteriaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
DYD3_k127_785334_2	977880.RALTA_A3117	6.867e-114	373.0	COG0411@1|root,COG0411@2|Bacteria,1MX51@1224|Proteobacteria,2VJN5@28216|Betaproteobacteria,1K0H1@119060|Burkholderiaceae	28216|Betaproteobacteria	E	abc transporter	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
DYD3_k127_785334_3	1278309.KB907107_gene1732	1.01e-64	231.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,1RU35@1236|Gammaproteobacteria,1XID0@135619|Oceanospirillales	135619|Oceanospirillales	K	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	degU	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
DYD3_k127_785334_0	1380391.JIAS01000012_gene4438	3.003e-280	900.0	COG0591@1|root,COG0642@1|root,COG0591@2|Bacteria,COG0642@2|Bacteria,1QTSW@1224|Proteobacteria,2TW0C@28211|Alphaproteobacteria,2JZ4C@204441|Rhodospirillales	204441|Rhodospirillales	T	COG0591 Na proline symporter	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_7,Response_reg
DYD3_k127_785334_1	1122963.AUHB01000003_gene3833	7.711e-274	851.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TRAP@28211|Alphaproteobacteria,36XFY@31993|Methylocystaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
DYD3_k127_787923_0	59538.XP_005973302.1	1.108e-97	324.0	COG0596@1|root,KOG4178@2759|Eukaryota,3A168@33154|Opisthokonta	33154|Opisthokonta	I	alpha/beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD3_k127_787923_2	631454.N177_2091	5.364e-66	231.0	COG0625@1|root,COG0625@2|Bacteria,1RA05@1224|Proteobacteria,2TS58@28211|Alphaproteobacteria,1JQN1@119043|Rhodobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_23980	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
DYD3_k127_787923_1	402881.Plav_3121	7.701e-95	318.0	COG1694@1|root,COG3956@2|Bacteria,1MVKM@1224|Proteobacteria,2TRC9@28211|Alphaproteobacteria,1JNNB@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	MazG nucleotide pyrophosphohydrolase domain	mazG	GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009267,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658	3.6.1.9	ko:K02499,ko:K04765	ko00230,ko00240,ko00760,ko00770,ko01100,map00230,map00240,map00760,map00770,map01100	-	R00086,R00087,R00103,R00287,R00426,R00515,R00662,R00720,R03004,R03036,R11323	RC00002	ko00000,ko00001,ko01000,ko03036	-	-	-	MazG
DYD3_k127_816698_1	1038859.AXAU01000005_gene5305	2.433e-113	371.0	COG0500@1|root,COG2226@2|Bacteria,1NWX3@1224|Proteobacteria,2TURQ@28211|Alphaproteobacteria,3JUR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ubiE/COQ5 methyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD3_k127_816698_0	1121106.JQKB01000066_gene5201	6.412e-133	429.0	COG0329@1|root,COG0329@2|Bacteria,1R45B@1224|Proteobacteria,2U0PG@28211|Alphaproteobacteria,2JQYX@204441|Rhodospirillales	204441|Rhodospirillales	EM	Dihydrodipicolinate synthetase family	-	-	-	-	-	-	-	-	-	-	-	-	DHDPS
DYD3_k127_841613_3	1211115.ALIQ01000089_gene4450	5.223e-77	267.0	COG1802@1|root,COG1802@2|Bacteria,1RBIC@1224|Proteobacteria,2V7ZV@28211|Alphaproteobacteria,3NBGJ@45404|Beijerinckiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD3_k127_841613_2	228405.HNE_2509	2.985e-79	279.0	2DMPM@1|root,32SWT@2|Bacteria,1REC9@1224|Proteobacteria,2U80R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_841613_6	1430440.MGMSRv2_3295	5.606e-47	177.0	COG2834@1|root,COG2834@2|Bacteria,1RA1S@1224|Proteobacteria,2U58W@28211|Alphaproteobacteria,2JSMG@204441|Rhodospirillales	204441|Rhodospirillales	M	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)	lolA	-	-	-	-	-	-	-	-	-	-	-	LolA
DYD3_k127_841613_1	1211112.ALJC01000101_gene1628	1.98e-90	304.0	COG2071@1|root,COG2071@2|Bacteria,1MV8E@1224|Proteobacteria,1RS51@1236|Gammaproteobacteria	1236|Gammaproteobacteria	E	Gamma-glutamyl-gamma-aminobutyrate hydrolase	spuA	-	-	ko:K07010	-	-	-	-	ko00000,ko01002	-	-	-	Peptidase_C26
DYD3_k127_841613_0	1282876.BAOK01000002_gene212	4.752e-205	648.0	COG0174@1|root,COG0174@2|Bacteria,1MU6V@1224|Proteobacteria,2TRCP@28211|Alphaproteobacteria,4BPJ4@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	E	Glutamine synthetase, catalytic domain	glnA1	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C
DYD3_k127_841613_4	107635.AZUO01000001_gene987	3.799e-61	220.0	COG0284@1|root,COG0284@2|Bacteria,1MW2C@1224|Proteobacteria,2TTB3@28211|Alphaproteobacteria,36Y20@31993|Methylocystaceae	28211|Alphaproteobacteria	F	Orotidine 5'-phosphate decarboxylase / HUMPS family	pyrF	GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.1.23	ko:K01591	ko00240,ko01100,map00240,map01100	M00051	R00965	RC00409	ko00000,ko00001,ko00002,ko01000	-	-	-	OMPdecase
DYD3_k127_841613_5	272568.GDI1501	9.258e-61	222.0	COG0583@1|root,COG0583@2|Bacteria,1QYAP@1224|Proteobacteria,2U7F2@28211|Alphaproteobacteria,2JSHS@204441|Rhodospirillales	204441|Rhodospirillales	K	LysR substrate binding domain	-	-	-	ko:K21699	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_841613_7	1121861.KB899912_gene1040	4.508e-24	110.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2UBS6@28211|Alphaproteobacteria,2JTR9@204441|Rhodospirillales	204441|Rhodospirillales	K	Sigma-70, region 4	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_841613_8	1267005.KB911259_gene3752	0.0004807	51.0	COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2TT0E@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Peptidase S8 and S53 subtilisin kexin sedolisin	apr	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S8
DYD3_k127_851764_1	497321.C664_12870	1.049e-130	427.0	COG0604@1|root,COG0604@2|Bacteria,1MV3W@1224|Proteobacteria,2VINX@28216|Betaproteobacteria,2KUVD@206389|Rhodocyclales	206389|Rhodocyclales	C	Zinc-binding dehydrogenase	-	-	-	ko:K19745	ko00640,ko01100,map00640,map01100	-	R00919	RC00095	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
DYD3_k127_851764_0	1197906.CAJQ02000053_gene4271	1.813e-210	681.0	COG0318@1|root,COG0318@2|Bacteria,1MUQZ@1224|Proteobacteria,2TRV7@28211|Alphaproteobacteria,3JRYR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	MA20_06730	-	6.2.1.34	ko:K12508	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding
DYD3_k127_851764_3	484770.UFO1_2979	2.501e-48	180.0	COG1280@1|root,COG1280@2|Bacteria,1V4SU@1239|Firmicutes,4H4KY@909932|Negativicutes	909932|Negativicutes	E	PFAM Lysine exporter protein (LYSE YGGA)	-	-	-	-	-	-	-	-	-	-	-	-	LysE
DYD3_k127_851764_2	748247.AZKH_3586	6.097e-80	274.0	COG1218@1|root,COG1218@2|Bacteria,1N0GY@1224|Proteobacteria,2VJWH@28216|Betaproteobacteria,2KXT2@206389|Rhodocyclales	206389|Rhodocyclales	P	COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase	-	-	3.1.3.7	ko:K01082	ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130	-	R00188,R00508	RC00078	ko00000,ko00001,ko01000,ko03016	-	-	-	Inositol_P
DYD3_k127_851764_5	1238182.C882_3424	1.453e-18	87.0	2E5JU@1|root,330B2@2|Bacteria,1N77B@1224|Proteobacteria,2UH27@28211|Alphaproteobacteria,2JUMK@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF3553)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3553
DYD3_k127_851764_4	1123267.JONN01000002_gene246	1.378e-24	109.0	COG5385@1|root,COG5385@2|Bacteria,1MVEY@1224|Proteobacteria,2TSE6@28211|Alphaproteobacteria,2K0H0@204457|Sphingomonadales	204457|Sphingomonadales	S	Histidine phosphotransferase C-terminal domain	-	-	-	ko:K13588	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001	-	-	-	HPTransfase
DYD3_k127_856343_3	1121033.AUCF01000001_gene2422	1.012e-09	66.0	COG4461@1|root,COG4461@2|Bacteria,1Q6ZP@1224|Proteobacteria,2UF48@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process	-	-	-	-	-	-	-	-	-	-	-	-	LprI
DYD3_k127_856343_2	1380394.JADL01000021_gene1864	1.29e-38	149.0	COG5319@1|root,COG5319@2|Bacteria,1MZN2@1224|Proteobacteria,2UBTA@28211|Alphaproteobacteria,2JTIJ@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF1178)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1178
DYD3_k127_856343_1	1380391.JIAS01000014_gene2269	1.138e-64	224.0	COG0782@1|root,COG0782@2|Bacteria,1RCXW@1224|Proteobacteria,2U5JU@28211|Alphaproteobacteria,2JS6I@204441|Rhodospirillales	204441|Rhodospirillales	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	greA	-	-	ko:K03624	-	-	-	-	ko00000,ko03021	-	-	-	GreA_GreB,GreA_GreB_N
DYD3_k127_856343_0	1333998.M2A_2482	4.393e-265	827.0	COG0458@1|root,COG0458@2|Bacteria,1MUDZ@1224|Proteobacteria,2TQZU@28211|Alphaproteobacteria,4BPM5@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain	carB	-	6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000	-	-	-	CPSase_L_D2,CPSase_L_D3,MGS
DYD3_k127_869794_0	371731.Rsw2DRAFT_1914	5.869e-146	488.0	COG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,1FCQD@1060|Rhodobacter	28211|Alphaproteobacteria	Q	Haemolysin-type calcium-binding repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	HemolysinCabind
DYD3_k127_869794_1	670292.JH26_20570	7.12e-140	449.0	COG1250@1|root,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TR8E@28211|Alphaproteobacteria,1JRRV@119045|Methylobacteriaceae	28211|Alphaproteobacteria	I	PFAM 3-hydroxyacyl-CoA dehydrogenase domain protein	hbdA	-	1.1.1.157	ko:K00074	ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120	-	R01976,R05576,R06941	RC00029,RC00117	ko00000,ko00001,ko01000	-	-	-	3HCDH,3HCDH_N
DYD3_k127_869794_2	1207063.P24_01996	1.62e-138	454.0	COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,2TR10@28211|Alphaproteobacteria,2JPTQ@204441|Rhodospirillales	204441|Rhodospirillales	C	electron transfer flavoprotein, alpha subunit	etfA	-	-	ko:K03522	-	-	-	-	ko00000,ko04147	-	-	-	ETF,ETF_alpha
DYD3_k127_869794_3	1110502.TMO_0123	1.125e-123	400.0	COG2086@1|root,COG2086@2|Bacteria,1MVH6@1224|Proteobacteria,2TR4J@28211|Alphaproteobacteria,2JPSB@204441|Rhodospirillales	204441|Rhodospirillales	C	Electron transfer flavoprotein, beta subunit	etfB	-	-	ko:K03521	-	-	-	-	ko00000	-	-	-	ETF
DYD3_k127_885389_1	1089551.KE386572_gene415	6.487e-106	346.0	COG1173@1|root,COG1173@2|Bacteria,1PFAG@1224|Proteobacteria,2V8S7@28211|Alphaproteobacteria,4BS73@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_1
DYD3_k127_885389_0	1089551.KE386572_gene414	1.05e-138	447.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,4BPK4@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	P	Oligopeptide/dipeptide transporter, C-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran,oligo_HPY
DYD3_k127_885389_2	1120792.JAFV01000001_gene1432	6.929e-75	257.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,36Y1R@31993|Methylocystaceae	28211|Alphaproteobacteria	E	Oligopeptide/dipeptide transporter, C-terminal region	MA20_14675	-	-	ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
DYD3_k127_890681_3	1449069.JMLO01000001_gene2011	1.061e-35	144.0	COG0583@1|root,COG0583@2|Bacteria,2H6E4@201174|Actinobacteria,4FWXR@85025|Nocardiaceae	201174|Actinobacteria	K	LysR substrate binding domain	oxyR	-	-	ko:K04761	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_890681_2	1463856.JOHY01000076_gene4309	2.459e-43	164.0	COG3631@1|root,COG3631@2|Bacteria,2IQII@201174|Actinobacteria	201174|Actinobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD3_k127_890681_1	78245.Xaut_4945	4.603e-46	179.0	COG1733@1|root,COG1733@2|Bacteria,1RIZT@1224|Proteobacteria,2VAGH@28211|Alphaproteobacteria,3F1U2@335928|Xanthobacteraceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
DYD3_k127_890681_0	69395.JQLZ01000003_gene350	2.1e-46	178.0	COG5331@1|root,COG5331@2|Bacteria,1N0MD@1224|Proteobacteria,2UEP8@28211|Alphaproteobacteria,2KHFA@204458|Caulobacterales	204458|Caulobacterales	S	MAPEG family	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
DYD3_k127_890681_4	754436.JCM19237_4296	1.352e-09	61.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,1RNMN@1236|Gammaproteobacteria,1XV8F@135623|Vibrionales	135623|Vibrionales	K	Transcriptional regulator	-	-	-	ko:K13636	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
DYD3_k127_893216_2	391626.OAN307_c06260	1.921e-28	123.0	COG3591@1|root,COG3591@2|Bacteria,1RE9Y@1224|Proteobacteria,2TSNE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Trypsin-like serine protease	-	-	-	ko:K04775	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Trypsin
DYD3_k127_893216_1	1429916.X566_13735	1.839e-29	122.0	COG5480@1|root,COG5480@2|Bacteria,1RISQ@1224|Proteobacteria,2U9NW@28211|Alphaproteobacteria,3JTM3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1036)	MA20_03870	-	-	-	-	-	-	-	-	-	-	-	DUF1036
DYD3_k127_893216_0	861299.J421_4393	1.929e-252	805.0	COG1643@1|root,COG1643@2|Bacteria,1ZT2C@142182|Gemmatimonadetes	142182|Gemmatimonadetes	L	Helicase associated domain (HA2)  Add an annotation	-	-	3.6.4.13	ko:K03579	-	-	-	-	ko00000,ko01000	-	-	-	DEAD,HA2,Helicase_C,HrpB_C
DYD3_k127_897052_2	713586.KB900536_gene1300	1.654e-57	203.0	COG1052@1|root,COG1052@2|Bacteria,1MVSS@1224|Proteobacteria,1RMWR@1236|Gammaproteobacteria,1WX6C@135613|Chromatiales	135613|Chromatiales	CH	D-isomer specific 2-hydroxyacid dehydrogenase	-	-	1.1.1.28,1.20.1.1	ko:K03778,ko:K18916	ko00620,ko01120,map00620,map01120	-	R00704	RC00044	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD3_k127_897052_1	631454.N177_3993	7.115e-117	383.0	COG0583@1|root,COG0583@2|Bacteria,1PGFR@1224|Proteobacteria,2V8MI@28211|Alphaproteobacteria,1JQ8H@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
DYD3_k127_897052_0	631454.N177_3991	2.872e-173	555.0	COG0075@1|root,COG0075@2|Bacteria,1MWHJ@1224|Proteobacteria,2TQSN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Serine-pyruvate aminotransferase archaeal aspartate aminotransferase	sgaA	-	2.6.1.44,2.6.1.45,2.6.1.51	ko:K00830	ko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146	M00346,M00532	R00369,R00372,R00585,R00588	RC00006,RC00008,RC00018	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_5
DYD3_k127_903354_2	1205680.CAKO01000042_gene5374	2.662e-13	72.0	COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2TR5X@28211|Alphaproteobacteria,2JPJY@204441|Rhodospirillales	204441|Rhodospirillales	E	Peptidase family M20/M25/M40	-	-	3.5.1.6,3.5.1.87	ko:K06016	ko00240,ko01100,map00240,map01100	M00046	R00905,R04666	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
DYD3_k127_903354_1	1122135.KB893146_gene1480	4.904e-36	145.0	COG1309@1|root,COG1309@2|Bacteria,1N1R7@1224|Proteobacteria,2UBVA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
DYD3_k127_903354_0	1205680.CAKO01000002_gene3129	3.633e-151	488.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria	28211|Alphaproteobacteria	IQ	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
DYD3_k127_904258_0	1121861.KB899910_gene668	5.47e-128	423.0	COG3519@1|root,COG3519@2|Bacteria,1MUY4@1224|Proteobacteria,2TUGV@28211|Alphaproteobacteria,2JRYG@204441|Rhodospirillales	204441|Rhodospirillales	S	Type VI secretion system, TssF	-	-	-	ko:K11896	-	M00334	-	-	ko00000,ko00002,ko02044	3.A.23.1	-	-	T6SS_TssF
DYD3_k127_904258_6	438753.AZC_2605	2.856e-47	185.0	COG3520@1|root,COG3520@2|Bacteria,1MWVS@1224|Proteobacteria,2U1QR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein conserved in bacteria	impH	-	-	ko:K11895	ko02025,map02025	M00334	-	-	ko00000,ko00001,ko00002,ko02044	3.A.23.1	-	-	T6SS_TssG
DYD3_k127_904258_4	438753.AZC_2606	1.166e-80	287.0	COG0500@1|root,COG0500@2|Bacteria,1MX2X@1224|Proteobacteria,2TSMI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	COG0500 SAM-dependent methyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	MethyTransf_Reg,Methyltransf_12,Methyltransf_25,Methyltransf_31
DYD3_k127_904258_3	765911.Thivi_3422	1.089e-80	297.0	COG0515@1|root,COG0790@1|root,COG0515@2|Bacteria,COG0790@2|Bacteria,1QA6R@1224|Proteobacteria,1SJVK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	KLT	Protein tyrosine kinase	-	-	-	-	-	-	-	-	-	-	-	-	Pkinase
DYD3_k127_904258_7	935548.KI912159_gene5536	1.319e-09	72.0	COG0790@1|root,COG4249@1|root,COG0790@2|Bacteria,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TR94@28211|Alphaproteobacteria,43MU9@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,Sel1,TPR_19
DYD3_k127_904258_5	1121861.KB899910_gene664	1.675e-49	192.0	2E9WN@1|root,3342D@2|Bacteria,1N6J0@1224|Proteobacteria,2US4N@28211|Alphaproteobacteria,2JWMM@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_904258_2	856793.MICA_2021	1.044e-88	315.0	COG2831@1|root,COG2831@2|Bacteria,1MWEC@1224|Proteobacteria,2U04Z@28211|Alphaproteobacteria,4BR0Q@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	U	Haemolysin secretion/activation protein ShlB/FhaC/HecB	hxuB	-	-	-	-	-	-	-	-	-	-	-	POTRA_2,ShlB
DYD3_k127_904258_1	1380394.JADL01000001_gene2956	4.189e-109	400.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,2JRTA@204441|Rhodospirillales	204441|Rhodospirillales	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	Haemagg_act
DYD3_k127_929552_1	342113.DM82_5096	5.713e-27	120.0	COG3714@1|root,COG3714@2|Bacteria,1N58Y@1224|Proteobacteria,2VVHW@28216|Betaproteobacteria,1KH1K@119060|Burkholderiaceae	28216|Betaproteobacteria	S	YhhN family	-	-	-	-	-	-	-	-	-	-	-	-	YhhN
DYD3_k127_929552_0	1123073.KB899242_gene1549	3.854e-68	241.0	COG0300@1|root,COG0300@2|Bacteria,1MWNZ@1224|Proteobacteria,1RQTP@1236|Gammaproteobacteria,1X42F@135614|Xanthomonadales	135614|Xanthomonadales	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
DYD3_k127_93036_1	1201288.M900_2187	0.0001195	53.0	COG3210@1|root,COG5295@1|root,COG3210@2|Bacteria,COG5295@2|Bacteria,1N0C9@1224|Proteobacteria	1224|Proteobacteria	UW	YadA-like membrane anchor domain	-	-	-	ko:K12342	ko03070,map03070	-	-	-	ko00000,ko00001,ko02044	1.B.40.1.3,1.B.40.1.4	-	-	YadA_anchor,YadA_stalk
DYD3_k127_93036_0	1110502.TMO_2370	3.918e-74	266.0	COG3325@1|root,COG3325@2|Bacteria,1RKP7@1224|Proteobacteria,2UBB4@28211|Alphaproteobacteria,2JUAN@204441|Rhodospirillales	204441|Rhodospirillales	G	Belongs to the glycosyl hydrolase 18 family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_963073_1	1205680.CAKO01000007_gene4318	1.312e-56	205.0	COG0429@1|root,COG0429@2|Bacteria,1MWV1@1224|Proteobacteria,2TSMR@28211|Alphaproteobacteria,2JRNA@204441|Rhodospirillales	204441|Rhodospirillales	S	alpha/beta hydrolase fold	-	-	-	ko:K07019	-	-	-	-	ko00000	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD3_k127_963073_0	1333998.M2A_1974	3.582e-98	334.0	COG0657@1|root,COG0657@2|Bacteria,1NEXK@1224|Proteobacteria,2U5X1@28211|Alphaproteobacteria,4BQU9@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	alpha/beta hydrolase fold	-	-	-	ko:K01066	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_3
DYD3_k127_963073_3	935548.KI912159_gene3715	3.549e-30	122.0	2DQG6@1|root,336NR@2|Bacteria,1NAM0@1224|Proteobacteria,2UFXA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
DYD3_k127_963073_2	856793.MICA_2220	4.551e-48	175.0	2CIAS@1|root,32S7M@2|Bacteria,1N2VP@1224|Proteobacteria,2UC6K@28211|Alphaproteobacteria,4BSPJ@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PemK_toxin
DYD3_k127_964033_5	331869.BAL199_16618	1.174e-19	97.0	COG0026@1|root,COG0026@2|Bacteria,1MU70@1224|Proteobacteria,2TRSV@28211|Alphaproteobacteria,4BQ26@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)	purK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	6.3.4.18	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07404	RC01927	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp
DYD3_k127_964033_2	391165.GbCGDNIH1_1364	2.263e-66	238.0	COG0041@1|root,COG0041@2|Bacteria,1RCWJ@1224|Proteobacteria,2U58D@28211|Alphaproteobacteria,2JRTF@204441|Rhodospirillales	204441|Rhodospirillales	F	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)	purE	-	5.4.99.18	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07405	RC01947	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRC
DYD3_k127_964033_6	1207063.P24_13618	2.753e-15	82.0	COG5481@1|root,COG5481@2|Bacteria,1NG9U@1224|Proteobacteria,2UFXJ@28211|Alphaproteobacteria,2JU2T@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF465)	-	-	-	-	-	-	-	-	-	-	-	-	DUF465
DYD3_k127_964033_8	1279038.KB907339_gene1378	4.563e-08	59.0	COG5570@1|root,COG5570@2|Bacteria,1NGRE@1224|Proteobacteria,2UJAX@28211|Alphaproteobacteria,2JUID@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF465)	-	-	-	-	-	-	-	-	-	-	-	-	DUF465
DYD3_k127_964033_1	1211115.ALIQ01000188_gene639	1.752e-76	268.0	COG0330@1|root,COG0330@2|Bacteria,1N5JY@1224|Proteobacteria,2TUCR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	prohibitin homologues	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
DYD3_k127_964033_0	1123072.AUDH01000001_gene2887	1.652e-134	438.0	COG0665@1|root,COG0665@2|Bacteria,1R7JH@1224|Proteobacteria,2U1VP@28211|Alphaproteobacteria,2JVIZ@204441|Rhodospirillales	204441|Rhodospirillales	E	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD3_k127_964033_3	178901.AmDm5_0756	1.824e-62	222.0	COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2TU3T@28211|Alphaproteobacteria,2JRX8@204441|Rhodospirillales	204441|Rhodospirillales	P	Destroys radicals which are normally produced within the cells and which are toxic to biological systems	sodB	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
DYD3_k127_964033_4	1380391.JIAS01000011_gene5511	8.428e-57	208.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2TUUZ@28211|Alphaproteobacteria,2JTDN@204441|Rhodospirillales	204441|Rhodospirillales	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
DYD3_k127_964033_7	1280950.HJO_01025	3.507e-08	56.0	COG0784@1|root,COG0784@2|Bacteria,1MX3Y@1224|Proteobacteria,2TT2R@28211|Alphaproteobacteria,43WD0@69657|Hyphomonadaceae	28211|Alphaproteobacteria	T	response regulator	phyR	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Sigma70_r4_2
DYD3_k127_980027_1	414684.RC1_1624	1.268e-141	467.0	COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,2TRY7@28211|Alphaproteobacteria,2JPFA@204441|Rhodospirillales	204441|Rhodospirillales	H	Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell	glnE	-	2.7.7.42,2.7.7.89	ko:K00982	-	-	-	-	ko00000,ko01000	-	-	-	GlnD_UR_UTase,GlnE
DYD3_k127_980027_3	1089552.KI911559_gene1875	5.109e-116	413.0	COG3164@1|root,COG3164@2|Bacteria,1MVDY@1224|Proteobacteria,2TSGG@28211|Alphaproteobacteria,2JPP2@204441|Rhodospirillales	204441|Rhodospirillales	M	Protein of unknown function	-	-	-	-	-	-	-	-	-	-	-	-	AsmA_2,DUF3971
DYD3_k127_980027_5	1121033.AUCF01000003_gene3267	7.408e-51	187.0	COG2411@1|root,COG2411@2|Bacteria,1N0KG@1224|Proteobacteria,2UCPX@28211|Alphaproteobacteria,2JX0N@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_980027_4	288000.BBta_6379	4.793e-81	283.0	COG2197@1|root,COG2197@2|Bacteria,1QU45@1224|Proteobacteria,2TWU3@28211|Alphaproteobacteria,3K6PS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	GerE
DYD3_k127_980027_0	402881.Plav_0677	5.909e-179	571.0	COG0498@1|root,COG0498@2|Bacteria,1MUWQ@1224|Proteobacteria,2TT0D@28211|Alphaproteobacteria,1JN6X@119043|Rhodobiaceae	28211|Alphaproteobacteria	E	Threonine synthase N terminus	thrC	-	4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP,Thr_synth_N
DYD3_k127_980027_2	402881.Plav_0678	6.644e-118	387.0	COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2TR39@28211|Alphaproteobacteria,1JNF0@119043|Rhodobiaceae	28211|Alphaproteobacteria	S	Insulinase (Peptidase family M16)	mpp	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M16,Peptidase_M16_C
DYD3_k127_982368_1	322710.Avin_08730	1.261e-248	773.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	C	belongs to the aldehyde dehydrogenase family	xylG	-	1.2.1.32,1.2.1.85	ko:K10217	ko00362,ko00380,ko00622,ko01100,ko01120,ko01220,map00362,map00380,map00622,map01100,map01120,map01220	M00038,M00569	R02762,R03889,R05353	RC00218,RC00254	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
DYD3_k127_982368_6	1220535.IMCC14465_18150	1.679e-100	333.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TUWC@28211|Alphaproteobacteria,4BR1C@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	Q	hydratase'	-	-	4.2.1.80	ko:K02509,ko:K02554	ko00350,ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00350,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R02601,R04132,R04781,R06897	RC00750,RC01213,RC01615,RC02595	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_982368_7	1131814.JAFO01000001_gene3654	5.488e-98	334.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2U0JG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	4-oxalocrotonate decarboxylase	phnK	-	4.1.1.77	ko:K01617	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R02602,R05374	RC00751,RC02672	ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
DYD3_k127_982368_14	1120705.FG95_03664	1.545e-09	69.0	COG1942@1|root,COG1942@2|Bacteria,1PT9Y@1224|Proteobacteria,2UCCA@28211|Alphaproteobacteria,2K7I6@204457|Sphingomonadales	204457|Sphingomonadales	G	4-oxalocrotonate tautomerase	xylH	-	5.3.2.6	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R03966,R05389	RC01040,RC01355	ko00000,ko00001,ko00002,ko01000	-	-	-	Tautomerase
DYD3_k127_982368_0	1198232.CYCME_2098	9.631e-268	829.0	COG2348@1|root,COG2348@2|Bacteria,1QZ9F@1224|Proteobacteria	1224|Proteobacteria	V	Methane/Phenol/Toluene Hydroxylase	-	-	1.14.13.227,1.14.13.236	ko:K15760,ko:K18223	ko00623,ko00640,ko01100,ko01120,ko01220,map00623,map00640,map01100,map01120,map01220	M00538	R02550,R03562,R05666,R10702	RC00269,RC00490,RC03249	ko00000,ko00001,ko00002,ko01000	-	-	-	Phenol_Hydrox,YHS
DYD3_k127_982368_12	1442598.JABW01000001_gene1803	1.116e-29	119.0	2BXCC@1|root,32VH7@2|Bacteria,1N1P7@1224|Proteobacteria	1224|Proteobacteria	Q	Toluene-4-monooxygenase system protein B (TmoB)	-	-	1.14.13.236	ko:K15761	ko00623,ko01100,ko01120,ko01220,map00623,map01100,map01120,map01220	M00538	R02550,R03562,R05666	RC00269,RC00490	ko00000,ko00001,ko00002,ko01000	-	-	-	TmoB
DYD3_k127_982368_11	1198232.CYCME_2096	8.118e-46	168.0	COG2146@1|root,COG2146@2|Bacteria,1RHEY@1224|Proteobacteria,1SA8F@1236|Gammaproteobacteria,462QT@72273|Thiotrichales	72273|Thiotrichales	P	Rieske-like [2Fe-2S] domain	-	-	-	ko:K15762	ko00623,ko00920,ko01100,ko01120,ko01220,map00623,map00920,map01100,map01120,map01220	M00538	R02550,R03562,R05666,R09513	RC00269,RC00490,RC02556	ko00000,ko00001,ko00002	-	-	-	Rieske
DYD3_k127_982368_13	1198232.CYCME_2095	7.713e-28	121.0	COG3445@1|root,COG3445@2|Bacteria,1N4YC@1224|Proteobacteria,1SB8A@1236|Gammaproteobacteria,462VI@72273|Thiotrichales	72273|Thiotrichales	S	MmoB/DmpM family	-	-	1.14.13.236	ko:K15763	ko00623,ko01100,ko01120,ko01220,map00623,map01100,map01120,map01220	M00538	R02550,R03562,R05666	RC00269,RC00490	ko00000,ko00001,ko00002,ko01000	-	-	-	MmoB_DmpM
DYD3_k127_982368_2	402626.Rpic_4636	3.35e-143	461.0	2DB89@1|root,2Z7R0@2|Bacteria,1NC0X@1224|Proteobacteria,2VKS3@28216|Betaproteobacteria,1K2Y2@119060|Burkholderiaceae	28216|Betaproteobacteria	Q	Methane/Phenol/Toluene Hydroxylase	tmoE	-	1.14.13.236	ko:K15764	ko00623,ko01100,ko01120,ko01220,map00623,map01100,map01120,map01220	M00538	R02550,R03562,R05666	RC00269,RC00490	ko00000,ko00001,ko00002,ko01000	-	-	-	Phenol_Hydrox
DYD3_k127_982368_5	1122604.JONR01000022_gene694	4.465e-112	374.0	COG0543@1|root,COG0633@1|root,COG0543@2|Bacteria,COG0633@2|Bacteria,1MXPX@1224|Proteobacteria,1RSMP@1236|Gammaproteobacteria,1X6C0@135614|Xanthomonadales	135614|Xanthomonadales	CH	Oxidoreductase FAD-binding domain	-	-	1.18.1.3	ko:K15765	ko00623,ko00920,ko01100,ko01120,ko01220,map00623,map00920,map01100,map01120,map01220	M00538	R02550,R03562,R05666,R09513	RC00269,RC00490,RC02556	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
DYD3_k127_982368_4	1121033.AUCF01000033_gene3595	1.168e-122	398.0	COG0596@1|root,COG0596@2|Bacteria,1QTTN@1224|Proteobacteria,2TRYE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	hydrolases or acyltransferases (alpha beta hydrolase superfamily)	-	-	-	ko:K19707	-	-	-	-	ko00000,ko03021	-	-	-	Abhydrolase_1
DYD3_k127_982368_15	1000565.METUNv1_03030	1.012e-08	63.0	COG2067@1|root,COG2067@2|Bacteria,1MV7W@1224|Proteobacteria,2VKWX@28216|Betaproteobacteria,2KW3I@206389|Rhodocyclales	206389|Rhodocyclales	I	Outer membrane protein transport protein (OMPP1/FadL/TodX)	-	-	-	ko:K06076	-	-	-	-	ko00000,ko02000	1.B.9	-	-	Toluene_X
DYD3_k127_982368_10	1384054.N790_07905	2.1e-48	184.0	COG2067@1|root,COG2067@2|Bacteria,1MV7W@1224|Proteobacteria,1RPTU@1236|Gammaproteobacteria,1X4KY@135614|Xanthomonadales	135614|Xanthomonadales	I	Outer membrane protein transport protein (OMPP1/FadL/TodX)	-	-	-	-	-	-	-	-	-	-	-	-	Toluene_X
DYD3_k127_982368_8	1454004.AW11_00464	1.151e-66	238.0	COG0834@1|root,COG0834@2|Bacteria,1MVT6@1224|Proteobacteria,2VK4N@28216|Betaproteobacteria	28216|Betaproteobacteria	ET	Amino acid ABC transporter substrate-binding protein	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_982368_9	1454004.AW11_00462	5.052e-51	188.0	COG0765@1|root,COG0834@1|root,COG0765@2|Bacteria,COG0834@2|Bacteria,1QQXM@1224|Proteobacteria,2VKYP@28216|Betaproteobacteria	28216|Betaproteobacteria	ET	Amino Acid	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD3_k127_996874_3	1500897.JQNA01000002_gene1098	4.34e-26	109.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2VPJ6@28216|Betaproteobacteria,1K0HR@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Sigma-70 region 2	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2
DYD3_k127_996874_4	1415780.JPOG01000001_gene429	1.526e-20	98.0	2ASCG@1|root,342CC@2|Bacteria,1NX44@1224|Proteobacteria,1SQJF@1236|Gammaproteobacteria,1XAT5@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD3_k127_996874_1	414684.RC1_3629	3.351e-225	706.0	COG0312@1|root,COG0312@2|Bacteria,1MUSK@1224|Proteobacteria,2TRSR@28211|Alphaproteobacteria,2JPFJ@204441|Rhodospirillales	204441|Rhodospirillales	S	peptidase U62, modulator of DNA gyrase	tldD	-	-	ko:K03568	-	-	-	-	ko00000,ko01002	-	-	-	PmbA_TldD
DYD3_k127_996874_2	1207063.P24_09656	1.053e-87	298.0	COG1622@1|root,COG1622@2|Bacteria,1MWHZ@1224|Proteobacteria,2TRK6@28211|Alphaproteobacteria,2JPNT@204441|Rhodospirillales	204441|Rhodospirillales	C	Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B)	-	-	1.9.3.1	ko:K02275	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.2,3.D.4.4,3.D.4.6	-	-	COX2,COX2_TM
DYD3_k127_996874_0	1121022.ABENE_17790	1.687e-264	825.0	COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,2TQP1@28211|Alphaproteobacteria,2KFEV@204458|Caulobacterales	204458|Caulobacterales	C	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B	-	-	1.9.3.1	ko:K02274	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6	-	-	COX1
## 4210 queries scanned
## Total time (seconds): 9.198007822036743
## Rate: 457.71 q/s