## Wed Oct 16 11:57:40 2024 ## emapper-2.1.12 ## /data/home/zkh/miniconda3/envs/eggnog-mapper/bin/emapper.py -i /data/home/zkh/binning/Potential_rubisco_autotrophic/EH3_bin.68.fa -m mmseqs --itype genome -o EH3_bin.68 --output_dir /data/home/zkh/meta_analysis/eggnog-mapper/all_bins_1385/EH3_bin.68 --cpu 28 ## #query seed_ortholog evalue score eggNOG_OGs max_annot_lvl COG_category Description Preferred_name GOs EC KEGG_ko KEGG_Pathway KEGG_Module KEGG_Reaction KEGG_rclass BRITE KEGG_TC CAZy BiGG_Reaction PFAMs EH3_k127_1007248_0 614083.AWQR01000001_gene3064 6.543e-83 284.0 COG1752@1|root,COG1752@2|Bacteria,1R7RX@1224|Proteobacteria,2VMTI@28216|Betaproteobacteria 28216|Betaproteobacteria S Patatin-like phospholipase - - - - - - - - - - - - Patatin EH3_k127_1007248_2 420662.Mpe_A0490 1.391e-36 145.0 COG3937@1|root,COG3937@2|Bacteria,1RIXG@1224|Proteobacteria,2VT1J@28216|Betaproteobacteria,1KM36@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Poly(hydroxyalcanoate) granule associated protein (phasin) - - - - - - - - - - - - Phasin EH3_k127_1007248_1 358220.C380_03070 2.016e-44 166.0 COG3320@1|root,COG4221@1|root,COG3320@2|Bacteria,COG4221@2|Bacteria,1QSHC@1224|Proteobacteria,2VKRX@28216|Betaproteobacteria,4AB29@80864|Comamonadaceae 28216|Betaproteobacteria M Male sterility protein - - - - - - - - - - - - NAD_binding_4,adh_short EH3_k127_1023103_13 883126.HMPREF9710_02673 3.913e-15 87.0 COG5002@1|root,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2WI6V@28216|Betaproteobacteria,478E4@75682|Oxalobacteraceae 28216|Betaproteobacteria T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - - - - - - - - - - HATPase_c,HisKA,PAS,dCache_1 EH3_k127_1023103_6 626418.bglu_1g05410 1.034e-62 218.0 COG0735@1|root,COG0735@2|Bacteria,1RDWJ@1224|Proteobacteria,2VR52@28216|Betaproteobacteria,1JZT8@119060|Burkholderiaceae 28216|Betaproteobacteria K Belongs to the Fur family fur - - ko:K03711 - - - - ko00000,ko03000 - - - FUR EH3_k127_1023103_10 760117.JN27_18605 2.213e-28 124.0 COG2913@1|root,COG2913@2|Bacteria,1N6YW@1224|Proteobacteria,2VRC6@28216|Betaproteobacteria,474IE@75682|Oxalobacteraceae 28216|Betaproteobacteria J Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamE - - ko:K06186 - - - - ko00000,ko02000 1.B.33.1 - - SmpA_OmlA EH3_k127_1023103_0 1286093.C266_01090 1.282e-111 366.0 COG0289@1|root,COG0289@2|Bacteria,1MUCT@1224|Proteobacteria,2VJC3@28216|Betaproteobacteria,1K3CP@119060|Burkholderiaceae 28216|Betaproteobacteria E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate dapB - 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - - DapB_C,DapB_N EH3_k127_1023103_3 1095769.CAHF01000013_gene3360 7.668e-78 266.0 COG0811@1|root,COG0811@2|Bacteria,1NMPB@1224|Proteobacteria,2VJ4U@28216|Betaproteobacteria,47302@75682|Oxalobacteraceae 28216|Betaproteobacteria U Biopolymer transport - - - ko:K03561 - - - - ko00000,ko02000 1.A.30.2.1 - - MotA_ExbB EH3_k127_1023103_8 1095769.CAHF01000013_gene3361 1.134e-41 158.0 COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,2VSVW@28216|Betaproteobacteria,474MY@75682|Oxalobacteraceae 28216|Betaproteobacteria U Biopolymer transport protein ExbD/TolR exbD - - ko:K03559 - - - - ko00000,ko02000 1.A.30.2.1 - - ExbD EH3_k127_1023103_4 1472716.KBK24_0138015 3.795e-74 259.0 COG0614@1|root,COG0614@2|Bacteria,1MWVF@1224|Proteobacteria,2VJ7T@28216|Betaproteobacteria,1K1P1@119060|Burkholderiaceae 28216|Betaproteobacteria P Periplasmic binding protein btuF - - ko:K02016,ko:K06858 ko02010,map02010 M00240,M00241 - - ko00000,ko00001,ko00002,ko02000 3.A.1.13,3.A.1.14 - - Peripla_BP_2 EH3_k127_1023103_11 338966.Ppro_1641 1.854e-27 117.0 2E3B5@1|root,32YAP@2|Bacteria,1N7KQ@1224|Proteobacteria,42W05@68525|delta/epsilon subdivisions,2WS7Z@28221|Deltaproteobacteria,43VK6@69541|Desulfuromonadales 28221|Deltaproteobacteria S Protein of unknown function (DUF2721) - - - - - - - - - - - - DUF2721 EH3_k127_1023103_2 757424.Hsero_4144 1.523e-90 302.0 COG1192@1|root,COG1192@2|Bacteria,1QBJX@1224|Proteobacteria,2VJNI@28216|Betaproteobacteria,473QY@75682|Oxalobacteraceae 28216|Betaproteobacteria D involved in chromosome partitioning - - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31,CbiA EH3_k127_1023103_9 216591.BCAL3093 4.023e-33 142.0 COG0727@1|root,32S46@2|Bacteria,1MZCU@1224|Proteobacteria,2VU00@28216|Betaproteobacteria,1K9G0@119060|Burkholderiaceae 28216|Betaproteobacteria S Fe-S-cluster oxidoreductase - - - ko:K06940 - - - - ko00000 - - - CxxCxxCC EH3_k127_1023103_7 1123487.KB892834_gene2696 5.561e-51 202.0 COG1120@1|root,COG1120@2|Bacteria,1MUNG@1224|Proteobacteria,2VRFJ@28216|Betaproteobacteria,2KW3Z@206389|Rhodocyclales 206389|Rhodocyclales HP COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components - - 3.6.3.34 ko:K02013 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.14 - - ABC_tran EH3_k127_1023103_5 159087.Daro_4031 1.509e-69 250.0 COG0609@1|root,COG0609@2|Bacteria,1MV9W@1224|Proteobacteria,2VK1S@28216|Betaproteobacteria,2KVFR@206389|Rhodocyclales 206389|Rhodocyclales P Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily - - - ko:K02015 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko02000 3.A.1.14 - - FecCD EH3_k127_1023103_1 1031711.RSPO_c01046 7.006e-98 344.0 COG4206@1|root,COG4206@2|Bacteria,1MW63@1224|Proteobacteria,2VH64@28216|Betaproteobacteria,1K0NI@119060|Burkholderiaceae 28216|Betaproteobacteria H receptor btuB - - ko:K02014,ko:K16092 - - - - ko00000,ko02000 1.B.14,1.B.14.3 - - Plug,TonB_dep_Rec EH3_k127_1023103_14 1005048.CFU_0891 0.000778 46.0 2EG8X@1|root,33A0Q@2|Bacteria,1NMVN@1224|Proteobacteria,2VY0V@28216|Betaproteobacteria,4750M@75682|Oxalobacteraceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_1023103_12 1532557.JL37_04700 2.849e-20 96.0 COG3027@1|root,COG3027@2|Bacteria,1N6YN@1224|Proteobacteria,2VUY2@28216|Betaproteobacteria,3T4NI@506|Alcaligenaceae 28216|Betaproteobacteria D Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division zapA - - ko:K09888 - - - - ko00000,ko03036 - - - ZapA EH3_k127_1036079_1 1187851.A33M_2746 5.772e-155 505.0 COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TR7S@28211|Alphaproteobacteria,3FCUA@34008|Rhodovulum 28211|Alphaproteobacteria I Poly-beta-hydroxybutyrate polymerase N terminal - - - ko:K03821 ko00650,map00650 - R04254 RC00004 ko00000,ko00001,ko01000 - - - PHBC_N,PhaC_N EH3_k127_1036079_4 864051.BurJ1DRAFT_4038 3.907e-85 298.0 COG0464@1|root,COG0464@2|Bacteria,1RFP5@1224|Proteobacteria 1224|Proteobacteria O ATPase family associated with various cellular activities (AAA) - - - - - - - - - - - - AAA,BCS1_N EH3_k127_1036079_3 1120999.JONM01000007_gene1777 1.943e-103 361.0 COG1305@1|root,COG1305@2|Bacteria,1MVMI@1224|Proteobacteria,2VH3S@28216|Betaproteobacteria 28216|Betaproteobacteria E PFAM transglutaminase domain protein - - - - - - - - - - - - Bact_transglu_N,Transglut_core EH3_k127_1036079_0 742159.HMPREF0004_3344 5.507e-270 855.0 COG2307@1|root,COG2308@1|root,COG2307@2|Bacteria,COG2308@2|Bacteria,1MX5P@1224|Proteobacteria,2VJEU@28216|Betaproteobacteria,3T38K@506|Alcaligenaceae 28216|Betaproteobacteria S A predicted alpha-helical domain with a conserved ER motif. - - - - - - - - - - - - Alpha-E,CP_ATPgrasp_2 EH3_k127_1036079_2 342113.DM82_4602 2.424e-144 460.0 COG1305@1|root,COG4196@1|root,COG1305@2|Bacteria,COG4196@2|Bacteria,1MVAG@1224|Proteobacteria,2VKKZ@28216|Betaproteobacteria,1K09S@119060|Burkholderiaceae 28216|Betaproteobacteria E transglutaminase domain protein - - - - - - - - - - - - Bact_transglu_N,DUF2126,Transglut_core EH3_k127_1088114_1 204773.HEAR2743 3.556e-119 412.0 COG0643@1|root,COG0745@1|root,COG2198@1|root,COG0643@2|Bacteria,COG0745@2|Bacteria,COG2198@2|Bacteria,1MUAG@1224|Proteobacteria,2VJSZ@28216|Betaproteobacteria,473JA@75682|Oxalobacteraceae 28216|Betaproteobacteria T Histidine kinase pilL - - ko:K02487,ko:K06596 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko01001,ko02022,ko02035 - - - CheW,H-kinase_dim,HATPase_c,Hpt,Response_reg EH3_k127_1088114_0 375286.mma_2953 4.429e-161 534.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2VJBX@28216|Betaproteobacteria,473N6@75682|Oxalobacteraceae 28216|Betaproteobacteria NT Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). pilJ - - ko:K02660 ko02020,ko02025,map02020,map02025 - - - ko00000,ko00001,ko02035,ko02044 - - - MCPsignal,PilJ EH3_k127_1088114_3 1123367.C666_06415 5.352e-31 129.0 COG0835@1|root,COG0835@2|Bacteria,1N07Q@1224|Proteobacteria,2VU6N@28216|Betaproteobacteria,2KX20@206389|Rhodocyclales 206389|Rhodocyclales NT Chemotaxis signal transduction protein pilI - - ko:K02659 ko02020,ko02025,map02020,map02025 - - - ko00000,ko00001,ko02035,ko02044 - - - CheW EH3_k127_1088114_2 204773.HEAR2746 6.489e-54 191.0 COG0745@1|root,COG0745@2|Bacteria,1RI9T@1224|Proteobacteria,2VSSD@28216|Betaproteobacteria,474F2@75682|Oxalobacteraceae 28216|Betaproteobacteria KT cheY-homologous receiver domain pilH - - ko:K02658 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko02022,ko02035,ko02044 - - - Response_reg EH3_k127_1088114_4 497321.C664_18027 8.336e-26 107.0 COG0745@1|root,COG0745@2|Bacteria,1RDYB@1224|Proteobacteria,2VR2Q@28216|Betaproteobacteria,2KWB2@206389|Rhodocyclales 206389|Rhodocyclales T cheY-homologous receiver domain pilG - - ko:K02657 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko02022,ko02035,ko02044 - - - Response_reg EH3_k127_1100258_7 522306.CAP2UW1_1266 1.029e-92 308.0 COG3119@1|root,COG3119@2|Bacteria,1MV92@1224|Proteobacteria,2VIFW@28216|Betaproteobacteria 28216|Betaproteobacteria P Pfam Sulfatase - - 3.1.6.1 ko:K01130 ko00140,ko00600,map00140,map00600 - R03980,R04856 RC00128,RC00231 ko00000,ko00001,ko01000 - - - Sulfatase EH3_k127_1100258_9 522306.CAP2UW1_1513 2.29e-68 244.0 COG2930@1|root,COG2930@2|Bacteria,1RAIB@1224|Proteobacteria,2VT65@28216|Betaproteobacteria 28216|Betaproteobacteria S Las17-binding protein actin regulator - - - - - - - - - - - - Ysc84 EH3_k127_1100258_14 1449049.JONW01000008_gene520 8.52e-19 94.0 2E5SP@1|root,330H2@2|Bacteria,1Q9TH@1224|Proteobacteria,2UGZT@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - Gly-zipper_OmpA EH3_k127_1100258_3 522306.CAP2UW1_3401 5.502e-227 713.0 COG1752@1|root,COG1752@2|Bacteria,1MUI6@1224|Proteobacteria,2VHA3@28216|Betaproteobacteria 28216|Betaproteobacteria S Phospholipase, patatin family - - - ko:K07001 - - - - ko00000 - - - Patatin EH3_k127_1100258_16 118173.KB235914_gene2653 3.319e-06 56.0 COG0457@1|root,COG0457@2|Bacteria 118173.KB235914_gene2653|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - EH3_k127_1100258_12 1144275.COCOR_03167 3.632e-58 211.0 COG3900@1|root,COG3900@2|Bacteria,1RKQP@1224|Proteobacteria,42US2@68525|delta/epsilon subdivisions,2WQT6@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Predicted periplasmic protein (DUF2092) - - - - - - - - - - - - DUF2092 EH3_k127_1100258_5 1304885.AUEY01000002_gene351 1.261e-138 452.0 COG4313@1|root,COG4313@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Phenol_MetA_deg EH3_k127_1100258_0 1304885.AUEY01000002_gene350 2.019e-298 947.0 COG3119@1|root,COG3119@2|Bacteria,1PFYE@1224|Proteobacteria,43A2J@68525|delta/epsilon subdivisions,2WQC7@28221|Deltaproteobacteria,2MNWS@213118|Desulfobacterales 28221|Deltaproteobacteria P Sulfatase - - - - - - - - - - - - Sulfatase EH3_k127_1100258_6 935557.ATYB01000008_gene5385 1.38e-95 322.0 COG3637@1|root,COG3637@2|Bacteria,1R3Z1@1224|Proteobacteria,2U1SQ@28211|Alphaproteobacteria,4BAX2@82115|Rhizobiaceae 28211|Alphaproteobacteria M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - OMP_b-brl EH3_k127_1100258_15 395019.Bmul_4352 6.282e-17 93.0 COG2207@1|root,COG2207@2|Bacteria,1Q3UX@1224|Proteobacteria,2VQKH@28216|Betaproteobacteria 28216|Betaproteobacteria K PFAM helix-turn-helix- domain containing protein, AraC type - - - ko:K04033 - - - - ko00000,ko03000 - - - HTH_18 EH3_k127_1100258_10 1033743.CAES01000032_gene906 5.199e-60 228.0 COG0179@1|root,COG0179@2|Bacteria,1TXA5@1239|Firmicutes,4I67F@91061|Bacilli,26R3V@186822|Paenibacillaceae 91061|Bacilli Q Fumarylacetoacetate hydrolase mhpD - - - - - - - - - - - FAA_hydrolase EH3_k127_1100258_8 1394178.AWOO02000006_gene3370 4.278e-88 320.0 COG1878@1|root,COG1878@2|Bacteria,2ICNS@201174|Actinobacteria 201174|Actinobacteria S Putative cyclase - - - - - - - - - - - - Cyclase EH3_k127_1100258_2 338969.Rfer_4204 7.303e-272 844.0 COG0318@1|root,COG0318@2|Bacteria,1MWSD@1224|Proteobacteria,2VJYZ@28216|Betaproteobacteria,4AC18@80864|Comamonadaceae 28216|Betaproteobacteria IQ PFAM AMP-dependent synthetase and ligase - - 6.2.1.48 ko:K02182 - - - - ko00000,ko01000 - - - AMP-binding,AMP-binding_C EH3_k127_1100258_4 338969.Rfer_4205 8.37e-215 672.0 COG0183@1|root,COG0183@2|Bacteria,1MU8C@1224|Proteobacteria,2VNH1@28216|Betaproteobacteria,4ACWV@80864|Comamonadaceae 28216|Betaproteobacteria I Belongs to the thiolase family - - - - - - - - - - - - Thiolase_C,Thiolase_N EH3_k127_1100258_13 330084.JNYZ01000001_gene3194 2.409e-22 109.0 COG2207@1|root,COG2207@2|Bacteria,2IBP1@201174|Actinobacteria,4E2SX@85010|Pseudonocardiales 201174|Actinobacteria K AraC-binding-like domain - - - - - - - - - - - - AraC_binding_2,HTH_18 EH3_k127_1100258_1 1123242.JH636434_gene4533 1.857e-288 893.0 COG3119@1|root,COG3119@2|Bacteria,2IXNZ@203682|Planctomycetes 203682|Planctomycetes P PFAM sulfatase - - 3.1.6.1 ko:K01130 ko00140,ko00600,map00140,map00600 - R03980,R04856 RC00128,RC00231 ko00000,ko00001,ko01000 - - - Sulfatase,Sulfatase_C EH3_k127_1100258_11 1300345.LF41_902 5.481e-59 215.0 COG2067@1|root,COG2067@2|Bacteria,1RJIQ@1224|Proteobacteria,1SAC1@1236|Gammaproteobacteria 1236|Gammaproteobacteria I long-chain fatty acid transport protein - - - - - - - - - - - - - EH3_k127_1100258_17 1028800.RG540_PA01880 5.384e-05 48.0 COG0028@1|root,COG0028@2|Bacteria,1MX3Q@1224|Proteobacteria,2U2RW@28211|Alphaproteobacteria,4BCIG@82115|Rhizobiaceae 28211|Alphaproteobacteria EH Belongs to the TPP enzyme family - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N EH3_k127_1104633_3 246200.SPO3344 4.4e-35 136.0 COG0626@1|root,COG0626@2|Bacteria,1MU57@1224|Proteobacteria,2U1US@28211|Alphaproteobacteria,4NB2Y@97050|Ruegeria 28211|Alphaproteobacteria E Cys/Met metabolism PLP-dependent enzyme - - 4.4.1.1 ko:K01758 ko00260,ko00270,ko00450,ko01100,ko01130,ko01230,map00260,map00270,map00450,map01100,map01130,map01230 M00338 R00782,R01001,R02408,R04770,R04930,R09366 RC00056,RC00069,RC00348,RC00382,RC00710,RC01209,RC01210,RC01245,RC02303 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Cys_Met_Meta_PP EH3_k127_1104633_5 522306.CAP2UW1_3859 1.159e-18 91.0 COG1254@1|root,COG1254@2|Bacteria,1N6NU@1224|Proteobacteria,2VVRU@28216|Betaproteobacteria 28216|Betaproteobacteria C Belongs to the acylphosphatase family acyP - 3.6.1.7 ko:K01512 ko00620,ko00627,ko01120,map00620,map00627,map01120 - R00317,R01421,R01515 RC00043 ko00000,ko00001,ko01000 - - - Acylphosphatase EH3_k127_1104633_0 1095769.CAHF01000006_gene1956 6.161e-184 586.0 COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2VHFW@28216|Betaproteobacteria,475Y7@75682|Oxalobacteraceae 28216|Betaproteobacteria C CoA-transferase family III - - 2.8.3.16 ko:K07749 - - - - ko00000,ko01000 - - - CoA_transf_3 EH3_k127_1104633_2 1123519.PSJM300_18110 2.764e-47 178.0 COG2050@1|root,COG2050@2|Bacteria,1RH0Z@1224|Proteobacteria,1S5W6@1236|Gammaproteobacteria,1Z02X@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria J COG0466 ATP-dependent Lon protease, bacterial type - - - - - - - - - - - - DUF4442 EH3_k127_1104633_1 1144342.PMI40_00328 6.187e-83 285.0 COG0584@1|root,COG0584@2|Bacteria,1MU8H@1224|Proteobacteria,2VKF6@28216|Betaproteobacteria,47371@75682|Oxalobacteraceae 28216|Betaproteobacteria C Glycerophosphoryl diester phosphodiesterase ugpQ - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - GDPD EH3_k127_1104633_6 555779.Dthio_PD0402 3.793e-16 83.0 COG3905@1|root,COG3905@2|Bacteria 2|Bacteria K .,Oxidizes proline to glutamate for use as a carbon and nitrogen source - - - - - - - - - - - - RHH_1 EH3_k127_1104633_4 671143.DAMO_1891 2.739e-23 109.0 COG1569@1|root,COG1569@2|Bacteria 2|Bacteria S PIN domain - - - ko:K07063 - - - - ko00000 - - - PIN_3 EH3_k127_1105979_1 1123367.C666_09275 5.012e-78 262.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2VHT0@28216|Betaproteobacteria,2KVJQ@206389|Rhodocyclales 206389|Rhodocyclales C COG1960 Acyl-CoA dehydrogenases - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N EH3_k127_1105979_4 1196835.A458_12230 1.714e-53 192.0 COG0346@1|root,COG0346@2|Bacteria,1RH3J@1224|Proteobacteria,1S60C@1236|Gammaproteobacteria,1Z311@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria E COG0346 Lactoylglutathione lyase and related lyases - - - - - - - - - - - - Glyoxalase EH3_k127_1105979_0 324602.Caur_1276 1.841e-96 322.0 COG0289@1|root,COG0289@2|Bacteria,2G7CZ@200795|Chloroflexi,376EK@32061|Chloroflexia 32061|Chloroflexia E PFAM Semialdehyde dehydrogenase NAD - binding - - 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - - DapB_C,DapB_N EH3_k127_1105979_3 1500893.JQNB01000001_gene3491 1.291e-67 249.0 COG0500@1|root,COG0500@2|Bacteria,1QWHM@1224|Proteobacteria,1T47V@1236|Gammaproteobacteria,1XCTD@135614|Xanthomonadales 135614|Xanthomonadales Q Methyltransferase - - - - - - - - - - - - Methyltransf_11 EH3_k127_1105979_2 640081.Dsui_0978 2.686e-70 244.0 COG3917@1|root,COG3917@2|Bacteria,1RDNQ@1224|Proteobacteria,2VQJ1@28216|Betaproteobacteria,2KZTF@206389|Rhodocyclales 206389|Rhodocyclales Q DSBA-like thioredoxin domain - - - - - - - - - - - - DSBA EH3_k127_1105979_5 640081.Dsui_1837 1.155e-41 156.0 COG2076@1|root,COG2076@2|Bacteria,1MZ54@1224|Proteobacteria,2VU4A@28216|Betaproteobacteria,2KX6X@206389|Rhodocyclales 206389|Rhodocyclales P Small Multidrug Resistance protein - - - ko:K03297 - - - - ko00000,ko02000 2.A.7.1 - - Multi_Drug_Res EH3_k127_1105979_7 1122604.JONR01000022_gene674 1.71e-21 105.0 COG2076@1|root,COG2076@2|Bacteria,1MZ54@1224|Proteobacteria,1S8SG@1236|Gammaproteobacteria,1X7VS@135614|Xanthomonadales 135614|Xanthomonadales P Small Multidrug Resistance protein - - - ko:K03297 - - - - ko00000,ko02000 2.A.7.1 - - Multi_Drug_Res EH3_k127_1105979_6 658612.MD26_22915 2.954e-29 119.0 COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,1S13N@1236|Gammaproteobacteria 1236|Gammaproteobacteria O Glutathione S-Transferase gst5 - 2.5.1.18 ko:K00799,ko:K11209 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_C_2,GST_N,GST_N_3 EH3_k127_1108061_4 365046.Rta_31810 1.666e-33 134.0 COG1283@1|root,COG1283@2|Bacteria,1MUDE@1224|Proteobacteria,2VJWM@28216|Betaproteobacteria,4AAPQ@80864|Comamonadaceae 28216|Betaproteobacteria P Na Pi-cotransporter II-related protein nptA - - ko:K03324 - - - - ko00000,ko02000 2.A.58.2 - - Na_Pi_cotrans,PhoU EH3_k127_1108061_0 391735.Veis_1097 1.011e-245 767.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2VIFS@28216|Betaproteobacteria,4A9PZ@80864|Comamonadaceae 28216|Betaproteobacteria C belongs to the aldehyde dehydrogenase family - - 1.2.1.3 ko:K00128 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh EH3_k127_1108061_1 296591.Bpro_4692 1.948e-200 632.0 COG1524@1|root,COG1524@2|Bacteria,1N5SF@1224|Proteobacteria,2VM3U@28216|Betaproteobacteria,4ABJX@80864|Comamonadaceae 28216|Betaproteobacteria S PFAM type I phosphodiesterase nucleotide pyrophosphatase - - 3.11.1.2 ko:K19670 ko00440,map00440 - R00318 RC01309 ko00000,ko00001,ko01000 - - - Phosphodiest EH3_k127_1108061_3 296591.Bpro_4693 8.263e-82 279.0 COG1802@1|root,COG1802@2|Bacteria,1MY8X@1224|Proteobacteria,2VRYQ@28216|Betaproteobacteria,4AETD@80864|Comamonadaceae 28216|Betaproteobacteria K FCD - - - - - - - - - - - - FCD,GntR EH3_k127_1108061_2 1458275.AZ34_16305 3.243e-151 485.0 COG1840@1|root,COG1840@2|Bacteria,1MXZ8@1224|Proteobacteria,2VKTZ@28216|Betaproteobacteria,4AB2I@80864|Comamonadaceae 28216|Betaproteobacteria P TIGRFAM 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component - - - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - SBP_bac_6 EH3_k127_1126233_1 1384056.N787_06245 1.085e-32 129.0 COG1006@1|root,COG1006@2|Bacteria,1RH8H@1224|Proteobacteria,1SA5H@1236|Gammaproteobacteria,1X76Q@135614|Xanthomonadales 135614|Xanthomonadales P NADH-ubiquinone/plastoquinone oxidoreductase chain 4L - - - ko:K05560 - - - - ko00000,ko02000 2.A.63.1 - - Oxidored_q2 EH3_k127_1126233_0 1439940.BAY1663_00537 2.906e-136 450.0 COG0651@1|root,COG0651@2|Bacteria,1MURB@1224|Proteobacteria,1RQBG@1236|Gammaproteobacteria 1236|Gammaproteobacteria CP Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter MnhD subunit phaD - 1.6.5.3 ko:K00342,ko:K05561,ko:K05568 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000,ko02000 2.A.63.1,2.A.63.2,3.D.1 - - Proton_antipo_M EH3_k127_1153221_1 267608.RSc1628 5.911e-84 293.0 COG0564@1|root,COG0564@2|Bacteria,1MUBN@1224|Proteobacteria,2VIFF@28216|Betaproteobacteria,1JZYN@119060|Burkholderiaceae 28216|Betaproteobacteria J Responsible for synthesis of pseudouridine from uracil rluD - 5.4.99.23 ko:K06180 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 EH3_k127_1153221_2 292415.Tbd_0809 9.005e-77 273.0 COG4105@1|root,COG4105@2|Bacteria,1MVS5@1224|Proteobacteria,2VH6I@28216|Betaproteobacteria,1KREX@119069|Hydrogenophilales 119069|Hydrogenophilales M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamD - - ko:K05807 - - - - ko00000,ko02000 1.B.33.1 - - YfiO EH3_k127_1153221_0 626418.bglu_1g14670 1.736e-113 381.0 COG1199@1|root,COG1199@2|Bacteria,1MVCU@1224|Proteobacteria,2VH0V@28216|Betaproteobacteria,1K1T6@119060|Burkholderiaceae 28216|Betaproteobacteria KL helicase dinG - 3.6.4.12 ko:K03722 - - - - ko00000,ko01000,ko03400 - - - DEAD,DEAD_2,Helicase_C_2,ResIII EH3_k127_1166398_2 1207063.P24_02906 5.215e-41 153.0 COG1638@1|root,COG1638@2|Bacteria,1MWAM@1224|Proteobacteria,2TTQ8@28211|Alphaproteobacteria,2JRAH@204441|Rhodospirillales 204441|Rhodospirillales G Bacterial extracellular solute-binding protein, family 7 - - - - - - - - - - - - DctP EH3_k127_1166398_3 29581.BW37_05372 3.502e-40 156.0 COG0517@1|root,COG0517@2|Bacteria,1QTXQ@1224|Proteobacteria,2VWDB@28216|Betaproteobacteria,474H3@75682|Oxalobacteraceae 28216|Betaproteobacteria S Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS EH3_k127_1166398_1 748247.AZKH_2358 2.511e-50 184.0 COG1278@1|root,COG1544@1|root,COG1278@2|Bacteria,COG1544@2|Bacteria,1RJ55@1224|Proteobacteria,2VR5Q@28216|Betaproteobacteria 28216|Betaproteobacteria J Sigma 54 modulation protein / S30EA ribosomal protein - - - - - - - - - - - - CSD,Ribosomal_S30AE EH3_k127_1166398_0 1144342.PMI40_04410 3.975e-71 249.0 COG3391@1|root,COG3391@2|Bacteria,1P862@1224|Proteobacteria,2VKXA@28216|Betaproteobacteria,47265@75682|Oxalobacteraceae 28216|Betaproteobacteria J Lactonase, 7-bladed beta-propeller - - - - - - - - - - - - Cytochrom_D1,Lactonase EH3_k127_1168045_2 381666.H16_A0194 1.097e-60 219.0 COG1734@1|root,COG1734@2|Bacteria,1RD08@1224|Proteobacteria,2VQR5@28216|Betaproteobacteria,1K758@119060|Burkholderiaceae 28216|Betaproteobacteria T Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters dksA - - ko:K06204 ko02026,map02026 - - - ko00000,ko00001,ko03000,ko03009,ko03021 - - - zf-dskA_traR EH3_k127_1168045_3 1095769.CAHF01000014_gene3022 3.513e-57 220.0 COG3113@1|root,COG3113@2|Bacteria,1QX17@1224|Proteobacteria,2WH3U@28216|Betaproteobacteria,473D1@75682|Oxalobacteraceae 28216|Betaproteobacteria S response to antibiotic - - - - - - - - - - - - STAS_2 EH3_k127_1168045_1 1123487.KB892834_gene3056 1.361e-91 303.0 COG5405@1|root,COG5405@2|Bacteria,1MVF2@1224|Proteobacteria,2VIFV@28216|Betaproteobacteria,2KUW6@206389|Rhodocyclales 206389|Rhodocyclales O Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery hslV - 3.4.25.2 ko:K01419 - - - - ko00000,ko01000,ko01002 - - - Proteasome EH3_k127_1168045_0 1095769.CAHF01000014_gene3024 1.065e-203 642.0 COG1220@1|root,COG1220@2|Bacteria,1MVK9@1224|Proteobacteria,2VHG3@28216|Betaproteobacteria,472CD@75682|Oxalobacteraceae 28216|Betaproteobacteria O this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis hslU - - ko:K03667 - - - - ko00000,ko03110 - - - AAA_2,ClpB_D2-small EH3_k127_1168045_5 1165096.ARWF01000001_gene635 4.346e-07 54.0 COG2608@1|root,COG2608@2|Bacteria,1QW3C@1224|Proteobacteria,2WIAG@28216|Betaproteobacteria,2KNE6@206350|Nitrosomonadales 206350|Nitrosomonadales P mercury ion transmembrane transporter activity - - - - - - - - - - - - - EH3_k127_1168045_4 1122619.KB892291_gene483 1.192e-14 74.0 COG0548@1|root,COG0548@2|Bacteria,1MU17@1224|Proteobacteria,2VIIY@28216|Betaproteobacteria,3T1Z0@506|Alcaligenaceae 28216|Betaproteobacteria F Belongs to the acetylglutamate kinase family. ArgB subfamily argB - 2.7.2.8 ko:K00930 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R02649 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase EH3_k127_1179730_0 1380394.JADL01000017_gene499 4.249e-178 574.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TQQH@28211|Alphaproteobacteria,2JPU2@204441|Rhodospirillales 204441|Rhodospirillales E ABC transporter, substrate-binding protein, family 5 - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 EH3_k127_1179730_1 1123060.JONP01000016_gene5487 4.885e-112 370.0 COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TR3F@28211|Alphaproteobacteria,2JRH0@204441|Rhodospirillales 204441|Rhodospirillales EP Binding-protein-dependent transport system inner membrane component - - - ko:K02033 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1 EH3_k127_1185030_2 522306.CAP2UW1_1756 1.129e-99 329.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2VJ1B@28216|Betaproteobacteria 28216|Betaproteobacteria M RND efflux system, outer membrane lipoprotein - - - - - - - - - - - - OEP EH3_k127_1185030_0 522306.CAP2UW1_1755 3.995e-158 518.0 COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2VHA2@28216|Betaproteobacteria 28216|Betaproteobacteria V PFAM secretion protein HlyD family protein - - - - - - - - - - - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 EH3_k127_1185030_1 1454004.AW11_01976 1.964e-126 412.0 28KBW@1|root,2Z9YU@2|Bacteria,1R668@1224|Proteobacteria,2VIT0@28216|Betaproteobacteria 28216|Betaproteobacteria S Protein of unknown function (DUF2955) - - - - - - - - - - - - DUF2955 EH3_k127_1185030_3 522306.CAP2UW1_0193 5.544e-17 95.0 2E8Y7@1|root,3337X@2|Bacteria,1NBJG@1224|Proteobacteria,2W2J4@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_1185030_4 264198.Reut_B4632 6.186e-12 74.0 2E8Y7@1|root,3337X@2|Bacteria,1NBJG@1224|Proteobacteria,2W2J4@28216|Betaproteobacteria,1K8KD@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_1185883_4 1123257.AUFV01000005_gene1306 1.262e-82 293.0 2DBS0@1|root,2ZANT@2|Bacteria,1R8Y3@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - EH3_k127_1185883_2 1095769.CAHF01000011_gene2667 1.321e-109 360.0 COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,2VH7N@28216|Betaproteobacteria,473AJ@75682|Oxalobacteraceae 28216|Betaproteobacteria L Endonuclease/Exonuclease/phosphatase family xthA - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos EH3_k127_1185883_6 1123255.JHYS01000003_gene2966 9.043e-36 145.0 COG0695@1|root,COG0695@2|Bacteria,1N7X3@1224|Proteobacteria,2VVPB@28216|Betaproteobacteria,4ADKN@80864|Comamonadaceae 28216|Betaproteobacteria O PFAM Glutaredoxin - - - - - - - - - - - - DUF4124,Glutaredoxin EH3_k127_1185883_0 1095769.CAHF01000013_gene3199 6.854e-281 878.0 COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,2VHPQ@28216|Betaproteobacteria,4730T@75682|Oxalobacteraceae 28216|Betaproteobacteria E Peptidase family M3 prlC - 3.4.24.70 ko:K01414 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M3 EH3_k127_1185883_5 742823.HMPREF9465_01796 2.688e-81 278.0 COG4566@1|root,COG4566@2|Bacteria,1N6WR@1224|Proteobacteria,2VM61@28216|Betaproteobacteria,4PQYY@995019|Sutterellaceae 28216|Betaproteobacteria K helix_turn_helix, Lux Regulon fixJ GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - ko:K13041 ko02020,map02020 M00514 - - ko00000,ko00001,ko00002,ko02022 - - - GerE,Response_reg EH3_k127_1185883_1 395019.Bmul_1132 1.647e-141 479.0 COG3829@1|root,COG4191@1|root,COG3829@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2VI6T@28216|Betaproteobacteria,1K2D8@119060|Burkholderiaceae 28216|Betaproteobacteria T PFAM ATP-binding region, ATPase domain protein fixL - - - - - - - - - - - HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9 EH3_k127_1185883_3 883126.HMPREF9710_01760 2.9e-92 307.0 COG2609@1|root,COG2609@2|Bacteria,1MV21@1224|Proteobacteria,2VIAH@28216|Betaproteobacteria,473JT@75682|Oxalobacteraceae 28216|Betaproteobacteria C Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) aceE - 1.2.4.1 ko:K00163 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200 M00307 R00014,R00209,R01699,R03270 RC00004,RC00027,RC00627,RC02742,RC02744,RC02882 br01601,ko00000,ko00001,ko00002,ko01000 - - - Transketolase_N EH3_k127_1196897_1 522306.CAP2UW1_0331 7.49e-25 110.0 2A8Z1@1|root,30Y2U@2|Bacteria,1PJYG@1224|Proteobacteria,2VJ83@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_1196897_0 1000565.METUNv1_03380 2.856e-108 357.0 COG5002@1|root,COG5002@2|Bacteria,1MWF3@1224|Proteobacteria,2VIBV@28216|Betaproteobacteria,2KVEJ@206389|Rhodocyclales 206389|Rhodocyclales T Histidine kinase phoR - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DUF3329,HATPase_c,HisKA,PAS_8 EH3_k127_11992_18 1192124.LIG30_0288 9.922e-13 68.0 COG3391@1|root,COG3391@2|Bacteria,1P862@1224|Proteobacteria,2VKXA@28216|Betaproteobacteria,1K2ZY@119060|Burkholderiaceae 28216|Betaproteobacteria S 40-residue YVTN family beta-propeller repeat protein - - - - - - - - - - - - Cytochrom_D1,Lactonase EH3_k127_11992_11 522306.CAP2UW1_3709 1.674e-86 294.0 COG0726@1|root,COG0726@2|Bacteria,1MX3V@1224|Proteobacteria,2VJVH@28216|Betaproteobacteria,1KQP6@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria G Polysaccharide deacetylase pdaA - - - - - - - - - - - Polysacc_deac_1 EH3_k127_11992_7 1123504.JQKD01000066_gene2509 7.404e-113 372.0 COG3000@1|root,COG3000@2|Bacteria,1MW5G@1224|Proteobacteria,2VJE7@28216|Betaproteobacteria,4ABUU@80864|Comamonadaceae 28216|Betaproteobacteria I Fatty acid hydroxylase - - - - - - - - - - - - FA_hydroxylase EH3_k127_11992_10 1286093.C266_04454 5.245e-95 318.0 COG1058@1|root,COG1058@2|Bacteria,1MVG6@1224|Proteobacteria,2VHTD@28216|Betaproteobacteria,1K2HA@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM molybdopterin binding domain yfaY - - - - - - - - - - - MoCF_biosynth EH3_k127_11992_16 159450.NH14_21500 2.592e-41 160.0 COG5490@1|root,COG5490@2|Bacteria,1R4SV@1224|Proteobacteria,2VQP2@28216|Betaproteobacteria,1JZMD@119060|Burkholderiaceae 28216|Betaproteobacteria S TIGRFAM phasin family protein phaP2 - - - - - - - - - - - Phasin_2 EH3_k127_11992_8 864073.HFRIS_024112 1.425e-110 365.0 COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2VJ0T@28216|Betaproteobacteria,475KE@75682|Oxalobacteraceae 28216|Betaproteobacteria BQ Histone deacetylase domain acuC - - - - - - - - - - - Hist_deacetyl EH3_k127_11992_12 1286093.C266_17671 1.259e-83 287.0 COG0697@1|root,COG0697@2|Bacteria,1MXCD@1224|Proteobacteria,2VMQB@28216|Betaproteobacteria,1K049@119060|Burkholderiaceae 28216|Betaproteobacteria EG Drug metabolite transporter (DMT) superfamily - - - - - - - - - - - - EamA EH3_k127_11992_15 269482.Bcep1808_1377 5.459e-54 206.0 COG0824@1|root,COG0824@2|Bacteria,1RGZN@1224|Proteobacteria,2VREZ@28216|Betaproteobacteria,1K703@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM thioesterase superfamily protein - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 EH3_k127_11992_1 1235457.C404_21050 1.272e-191 602.0 COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2VJ9X@28216|Betaproteobacteria,1K1D2@119060|Burkholderiaceae 28216|Betaproteobacteria CE Tartrate dehydrogenase ttuC GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 ko:K07246 ko00630,ko00650,map00630,map00650 - R00215,R01751,R02545,R06180 RC00084,RC00105,RC00594 ko00000,ko00001,ko01000 - - - Iso_dh EH3_k127_11992_9 983917.RGE_28020 1.941e-97 333.0 COG1686@1|root,COG1686@2|Bacteria,1MWZA@1224|Proteobacteria,2VH1S@28216|Betaproteobacteria,1KJDZ@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Belongs to the peptidase S11 family pbpG - - ko:K07262 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_S11 EH3_k127_11992_6 883126.HMPREF9710_01812 1.617e-113 372.0 COG1414@1|root,COG1414@2|Bacteria,1MUNW@1224|Proteobacteria,2VHB6@28216|Betaproteobacteria,472SY@75682|Oxalobacteraceae 28216|Betaproteobacteria K helix_turn_helix isocitrate lyase regulation yiaJ - - - - - - - - - - - HTH_IclR,IclR EH3_k127_11992_5 93220.LV28_24465 2.827e-114 372.0 COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2VNV2@28216|Betaproteobacteria,1K0C9@119060|Burkholderiaceae 28216|Betaproteobacteria C Cysteine-rich domain - - - ko:K18928 - - - - ko00000 - - - CCG EH3_k127_11992_0 1286093.C266_17641 1.073e-224 705.0 COG1139@1|root,COG1139@2|Bacteria,1MV6J@1224|Proteobacteria,2VJ3Y@28216|Betaproteobacteria,1K165@119060|Burkholderiaceae 28216|Betaproteobacteria C 4Fe-4S ferredoxin, iron-sulfur binding - - - ko:K18929 - - - - ko00000 - - - DUF3390,Fer4_8,LUD_dom EH3_k127_11992_2 1121405.dsmv_2382 3.633e-163 536.0 COG0247@1|root,COG0247@2|Bacteria,1MUMH@1224|Proteobacteria,42MIV@68525|delta/epsilon subdivisions,2WJ5X@28221|Deltaproteobacteria,2MIC5@213118|Desulfobacterales 28221|Deltaproteobacteria C 4Fe-4S dicluster domain - - - - - - - - - - - - CCG,Fer4_8 EH3_k127_11992_17 94624.Bpet4511 7.988e-15 85.0 COG1514@1|root,COG1514@2|Bacteria,1PKA4@1224|Proteobacteria,2VWH3@28216|Betaproteobacteria,3T4GN@506|Alcaligenaceae 28216|Betaproteobacteria J Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester ligT - 3.1.4.58 ko:K01975 - - - - ko00000,ko01000,ko03016 - - - 2_5_RNA_ligase2,LigT_PEase EH3_k127_11992_3 1031711.RSPO_c01696 6.684e-124 414.0 COG0167@1|root,COG0167@2|Bacteria,1MU7C@1224|Proteobacteria,2VJ6H@28216|Betaproteobacteria,1K0GT@119060|Burkholderiaceae 28216|Betaproteobacteria F Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor pyrD - 1.3.5.2 ko:K00254 ko00240,ko01100,map00240,map01100 M00051 R01868 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh EH3_k127_11992_4 204773.HEAR2443 6.405e-115 374.0 COG2935@1|root,COG2935@2|Bacteria,1MW62@1224|Proteobacteria,2VJ8E@28216|Betaproteobacteria,473K0@75682|Oxalobacteraceae 28216|Betaproteobacteria O May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate ate - 2.3.2.29 ko:K21420 - - R11547,R11548 RC00064 ko00000,ko01000 - - - ATE_C,ATE_N EH3_k127_11992_14 196367.JNFG01000001_gene2032 1.659e-75 271.0 COG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,2VIUV@28216|Betaproteobacteria,1K04E@119060|Burkholderiaceae 28216|Betaproteobacteria O Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine aat - 2.3.2.6 ko:K00684 - - R03813,R11443,R11444 RC00055,RC00064 ko00000,ko01000 - - - Leu_Phe_trans EH3_k127_11992_13 477184.KYC_03209 4.145e-77 262.0 COG1051@1|root,COG1051@2|Bacteria,1REBW@1224|Proteobacteria,2VQ39@28216|Betaproteobacteria,3T3JP@506|Alcaligenaceae 28216|Betaproteobacteria F Nudix hydrolase nudC_1 - - - - - - - - - - - NUDIX,Nudix_N_2 EH3_k127_11992_19 862965.PARA_13270 1.651e-11 66.0 2AWWG@1|root,31NU0@2|Bacteria,1NMXT@1224|Proteobacteria,1SIEV@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - EH3_k127_120089_2 305700.B447_05098 1.987e-66 230.0 COG1045@1|root,COG1045@2|Bacteria,1MVFX@1224|Proteobacteria,2VH8C@28216|Betaproteobacteria,2KVCE@206389|Rhodocyclales 206389|Rhodocyclales E serine acetyltransferase cysE - 2.3.1.30 ko:K00640 ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111 M00021 R00586 RC00004,RC00041 ko00000,ko00001,ko00002,ko01000 - - - Hexapep EH3_k127_120089_3 1454004.AW11_01710 7.417e-61 219.0 COG2908@1|root,COG2908@2|Bacteria,1N3U7@1224|Proteobacteria,2VQRP@28216|Betaproteobacteria,1KQTQ@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria S Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxH - 3.6.1.54 ko:K03269 ko00540,ko01100,map00540,map01100 M00060 R04549 RC00002 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Metallophos,Metallophos_2 EH3_k127_120089_0 395019.Bmul_1200 2.657e-80 270.0 COG0652@1|root,COG0652@2|Bacteria,1R9ZQ@1224|Proteobacteria,2VQ3Z@28216|Betaproteobacteria,1K11Z@119060|Burkholderiaceae 28216|Betaproteobacteria O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides ppiB - 5.2.1.8 ko:K03768 - - - - ko00000,ko01000,ko03110 - - - Pro_isomerase EH3_k127_120089_1 987059.RBXJA2T_10454 3.665e-70 252.0 COG0652@1|root,COG0652@2|Bacteria,1R9ZQ@1224|Proteobacteria,2VQ6F@28216|Betaproteobacteria,1KKPY@119065|unclassified Burkholderiales 28216|Betaproteobacteria M PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides ppiA - 5.2.1.8 ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase EH3_k127_120089_4 365046.Rta_15390 2.956e-38 149.0 COG0457@1|root,COG0457@2|Bacteria,1Q84V@1224|Proteobacteria,2VJAQ@28216|Betaproteobacteria,4AB2J@80864|Comamonadaceae 28216|Betaproteobacteria NU PFAM TPR repeat-containing protein - - - - - - - - - - - - DUF4440,TPR_11,TPR_16,TPR_17,TPR_19,TPR_8 EH3_k127_1203238_1 296591.Bpro_3218 5.788e-144 463.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VHEJ@28216|Betaproteobacteria,4ABPI@80864|Comamonadaceae 28216|Betaproteobacteria P Belongs to the ABC transporter superfamily cysA2 - 3.6.3.30 ko:K02010 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.10 - - ABC_tran,TOBE_2 EH3_k127_1203238_0 1458275.AZ34_16295 4.877e-185 604.0 COG1178@1|root,COG1178@2|Bacteria,1MXZZ@1224|Proteobacteria,2VI17@28216|Betaproteobacteria,4ACCU@80864|Comamonadaceae 28216|Betaproteobacteria P binding-protein-dependent transport systems inner membrane component - - - ko:K02011 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - BPD_transp_1 EH3_k127_1203619_0 85643.Tmz1t_2593 5.17e-129 415.0 COG0167@1|root,COG0167@2|Bacteria,1MU7C@1224|Proteobacteria,2VJ6H@28216|Betaproteobacteria,2KVCI@206389|Rhodocyclales 206389|Rhodocyclales F Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor pyrD - 1.3.5.2 ko:K00254 ko00240,ko01100,map00240,map01100 M00051 R01868 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh EH3_k127_1203619_1 1123072.AUDH01000001_gene2911 1.223e-113 379.0 COG0686@1|root,COG0686@2|Bacteria,1QTX1@1224|Proteobacteria,2TQQC@28211|Alphaproteobacteria,2JQ2D@204441|Rhodospirillales 204441|Rhodospirillales E Belongs to the AlaDH PNT family ald - 1.4.1.1 ko:K00259 ko00250,ko00430,ko01100,map00250,map00430,map01100 - R00396 RC00008 ko00000,ko00001,ko01000 - - - AlaDh_PNT_C,AlaDh_PNT_N EH3_k127_1203619_2 1348657.M622_14850 9.255e-99 325.0 COG4657@1|root,COG4657@2|Bacteria,1MU8X@1224|Proteobacteria,2VH0C@28216|Betaproteobacteria,2KUIH@206389|Rhodocyclales 206389|Rhodocyclales C Part of a membrane complex involved in electron transport - - - ko:K03617 - - - - ko00000 - - - Rnf-Nqr EH3_k127_1203619_3 1348657.M622_14845 3.149e-57 212.0 COG2878@1|root,COG2878@2|Bacteria,1MUWU@1224|Proteobacteria,2VN5I@28216|Betaproteobacteria,2KVNK@206389|Rhodocyclales 206389|Rhodocyclales C Part of a membrane complex involved in electron transport - - - ko:K03616 - - - - ko00000 - - - FeS,Fer4_21 EH3_k127_1203890_1 1144319.PMI16_00793 1.331e-91 304.0 COG4974@1|root,COG4974@2|Bacteria,1MVNF@1224|Proteobacteria,2VIHD@28216|Betaproteobacteria,473XE@75682|Oxalobacteraceae 28216|Betaproteobacteria D Phage integrase, N-terminal SAM-like domain xerD - - ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase EH3_k127_1203890_2 760117.JN27_16695 2.66e-72 246.0 COG2606@1|root,COG2606@2|Bacteria,1RGX5@1224|Proteobacteria,2VQAY@28216|Betaproteobacteria,47416@75682|Oxalobacteraceae 28216|Betaproteobacteria J Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily ebsC - - ko:K03976 - - - - ko00000,ko01000,ko03016 - - - tRNA_edit EH3_k127_1203890_3 1144342.PMI40_03939 2.188e-61 218.0 COG0344@1|root,COG0344@2|Bacteria,1RD4Z@1224|Proteobacteria,2VQ10@28216|Betaproteobacteria,472B0@75682|Oxalobacteraceae 28216|Betaproteobacteria I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP plsY - 2.3.1.15 ko:K08591 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - G3P_acyltransf EH3_k127_1203890_0 882378.RBRH_01159 2.298e-137 449.0 COG0533@1|root,COG0533@2|Bacteria,1MU6S@1224|Proteobacteria,2VHDR@28216|Betaproteobacteria,1K0V6@119060|Burkholderiaceae 28216|Betaproteobacteria J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction tsaD - 2.3.1.234 ko:K01409 - - R10648 RC00070,RC00416 ko00000,ko01000,ko03016 - - - Peptidase_M22 EH3_k127_1203890_4 762966.HMPREF9439_02454 1.886e-30 123.0 COG0828@1|root,COG0828@2|Bacteria,1MZCC@1224|Proteobacteria,2VTZ4@28216|Betaproteobacteria,4PRA8@995019|Sutterellaceae 28216|Betaproteobacteria J Ribosomal protein S21 rpsU - - ko:K02970 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S21 EH3_k127_1229604_0 1071679.BG57_05940 2.201e-101 338.0 COG1469@1|root,COG1469@2|Bacteria,1MV1B@1224|Proteobacteria,2VIC9@28216|Betaproteobacteria,1K2E8@119060|Burkholderiaceae 28216|Betaproteobacteria S Converts GTP to 7,8-dihydroneopterin triphosphate folE2 - 3.5.4.16 ko:K09007 ko00790,ko01100,map00790,map01100 M00126 R00428,R04639,R05046,R05048 RC00263,RC00294,RC00323,RC00945,RC01188 ko00000,ko00001,ko00002,ko01000 - - - GCHY-1 EH3_k127_1229604_1 388051.AUFE01000024_gene4706 2.455e-62 220.0 COG0386@1|root,COG0386@2|Bacteria,1RDR8@1224|Proteobacteria,2VQHV@28216|Betaproteobacteria 28216|Betaproteobacteria O Belongs to the glutathione peroxidase family - - 1.11.1.9 ko:K00432 ko00480,ko00590,ko04918,map00480,map00590,map04918 - R00274,R07034,R07035 RC00011,RC00982 ko00000,ko00001,ko01000 - - - GSHPx EH3_k127_1239974_15 338969.Rfer_3775 3.132e-57 203.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VI0I@28216|Betaproteobacteria 28216|Betaproteobacteria IQ PFAM AMP-dependent synthetase and ligase - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C EH3_k127_1239974_8 1198452.Jab_2c23490 8.517e-88 308.0 COG1752@1|root,COG1752@2|Bacteria,1MU6Z@1224|Proteobacteria,2VHBX@28216|Betaproteobacteria,473T3@75682|Oxalobacteraceae 28216|Betaproteobacteria S Esterase of the alpha-beta hydrolase superfamily - - - - - - - - - - - - Patatin EH3_k127_1239974_10 742823.HMPREF9465_00566 9.412e-79 267.0 COG0193@1|root,COG0193@2|Bacteria,1MX1P@1224|Proteobacteria,2VKKJ@28216|Betaproteobacteria,4PQXJ@995019|Sutterellaceae 28216|Betaproteobacteria J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis pth - 3.1.1.29 ko:K01056 - - - - ko00000,ko01000,ko03012 - - - Pept_tRNA_hydro EH3_k127_1239974_12 762966.HMPREF9439_00386 2.312e-65 245.0 COG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,2VQNU@28216|Betaproteobacteria,4PQ78@995019|Sutterellaceae 28216|Betaproteobacteria J This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance ctc - - ko:K02897 ko03010,map03010 M00178 - - ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L25p,Ribosomal_TL5_C EH3_k127_1239974_2 469610.HMPREF0189_01513 6.85e-157 499.0 COG0462@1|root,COG0462@2|Bacteria,1MW21@1224|Proteobacteria,2VHU0@28216|Betaproteobacteria,1KJRH@119065|unclassified Burkholderiales 28216|Betaproteobacteria F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) prs - 2.7.6.1 ko:K00948 ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230 M00005 R01049 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - Pribosyl_synth,Pribosyltran_N EH3_k127_1239974_20 1485543.JMME01000015_gene179 0.0006531 44.0 28RFR@1|root,2ZDUU@2|Bacteria,1W3TE@1239|Firmicutes,4H8JU@909932|Negativicutes 909932|Negativicutes - - - - - - - - - - - - - - - EH3_k127_1239974_9 339670.Bamb_2861 9.806e-82 283.0 COG1947@1|root,COG1947@2|Bacteria,1MVU3@1224|Proteobacteria,2VHK3@28216|Betaproteobacteria,1JZZI@119060|Burkholderiaceae 28216|Betaproteobacteria F Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol ispE - 2.7.1.148 ko:K00919 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05634 RC00002,RC01439 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N EH3_k127_1239974_18 1231391.AMZF01000019_gene2091 8.52e-19 94.0 COG3017@1|root,COG3017@2|Bacteria,1N5H9@1224|Proteobacteria,2VUJP@28216|Betaproteobacteria,3T4KC@506|Alcaligenaceae 28216|Betaproteobacteria M Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein lolB - - ko:K02494 - - - - ko00000 - - - LolB EH3_k127_1239974_3 204773.HEAR2890 4.145e-117 399.0 COG0457@1|root,COG0457@2|Bacteria,1MYB8@1224|Proteobacteria,2VI6C@28216|Betaproteobacteria,4729N@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_19,TPR_8 EH3_k127_1239974_7 360910.BAV0533 1.546e-93 316.0 COG0266@1|root,COG0266@2|Bacteria,1MVM5@1224|Proteobacteria,2VI10@28216|Betaproteobacteria,3T1I4@506|Alcaligenaceae 28216|Betaproteobacteria L Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates fpg - 3.2.2.23,4.2.99.18 ko:K10563 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Fapy_DNA_glyco,H2TH,zf-FPG_IleRS EH3_k127_1239974_0 1095769.CAHF01000014_gene2954 1.2e-176 575.0 COG0699@1|root,COG0699@2|Bacteria,1MXBK@1224|Proteobacteria,2VKA1@28216|Betaproteobacteria,4732I@75682|Oxalobacteraceae 28216|Betaproteobacteria S Dynamin family - - - - - - - - - - - - Dynamin_N EH3_k127_1239974_4 667632.KB890217_gene4775 9.517e-115 381.0 COG1194@1|root,COG1194@2|Bacteria,1MUD4@1224|Proteobacteria,2VH21@28216|Betaproteobacteria,1K2KI@119060|Burkholderiaceae 28216|Betaproteobacteria L a g-specific adenine glycosylase mutY - - ko:K03575 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - EndIII_4Fe-2S,HhH-GPD,NUDIX_4 EH3_k127_1239974_13 604331.AUHY01000001_gene1265 9.104e-65 226.0 COG2128@1|root,COG2128@2|Bacteria 2|Bacteria S hydroperoxide reductase activity - - - - - - - - - - - - CMD EH3_k127_1239974_16 402626.Rpic_0257 2.543e-52 195.0 COG2802@1|root,COG2802@2|Bacteria,1RFYH@1224|Proteobacteria,2VSA4@28216|Betaproteobacteria,1JZR8@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM peptidase S16 lon domain protein - - - ko:K07157 - - - - ko00000 - - - LON_substr_bdg EH3_k127_1239974_6 266265.Bxe_A4126 1.078e-102 342.0 COG1660@1|root,COG1660@2|Bacteria,1MVX6@1224|Proteobacteria,2VIH5@28216|Betaproteobacteria,1K3DN@119060|Burkholderiaceae 28216|Betaproteobacteria S Displays ATPase and GTPase activities yhbJ - - ko:K06958 - - - - ko00000,ko03019 - - - ATP_bind_2 EH3_k127_1239974_19 640081.Dsui_0700 2.74e-07 56.0 2E4IS@1|root,32ZDU@2|Bacteria,1N7N3@1224|Proteobacteria,2VVSI@28216|Betaproteobacteria,2KXJY@206389|Rhodocyclales 206389|Rhodocyclales S psiF repeat - - - - - - - - - - - - PsiF_repeat EH3_k127_1239974_5 1500894.JQNN01000001_gene4031 2.79e-110 364.0 COG1493@1|root,COG1493@2|Bacteria,1NNN5@1224|Proteobacteria,2VJCH@28216|Betaproteobacteria,472H4@75682|Oxalobacteraceae 28216|Betaproteobacteria H Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) hprK - - ko:K06023 - - - - ko00000,ko01000 - - - Hpr_kinase_C,Hpr_kinase_N EH3_k127_1239974_14 1000565.METUNv1_03640 3.493e-63 224.0 COG1762@1|root,COG1762@2|Bacteria,1RD0E@1224|Proteobacteria,2VRDH@28216|Betaproteobacteria,2KW4R@206389|Rhodocyclales 206389|Rhodocyclales G COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) ptsN - - ko:K02806 ko02060,map02060 - - - ko00000,ko00001,ko01000,ko02000 - - - PTS_EIIA_2 EH3_k127_1239974_17 243160.BMA3109 2.672e-33 132.0 COG1544@1|root,COG1544@2|Bacteria,1MZHW@1224|Proteobacteria,2VU5H@28216|Betaproteobacteria,1K7UV@119060|Burkholderiaceae 28216|Betaproteobacteria J sigma 54 modulation protein ribosomal protein S30EA raiA - - ko:K05808 - - - - ko00000,ko03009 - - - Ribosomal_S30AE EH3_k127_1239974_1 1434929.X946_2128 3.88e-157 516.0 COG1508@1|root,COG1508@2|Bacteria,1MW4V@1224|Proteobacteria,2VIEV@28216|Betaproteobacteria,1K1FU@119060|Burkholderiaceae 28216|Betaproteobacteria K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released rpoN - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD EH3_k127_1239974_11 556269.ACDQ01000011_gene281 4.025e-70 239.0 COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,2VH29@28216|Betaproteobacteria,47239@75682|Oxalobacteraceae 28216|Betaproteobacteria S transport system, ATPase component lptB - - ko:K06861 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko01000,ko02000 1.B.42.1 - - ABC_tran,BCA_ABC_TP_C EH3_k127_1252477_0 338969.Rfer_4176 5.62e-80 280.0 COG2271@1|root,COG2271@2|Bacteria,1R8Q1@1224|Proteobacteria,2VKPK@28216|Betaproteobacteria,4ABJB@80864|Comamonadaceae 28216|Betaproteobacteria G Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_1252477_1 864051.BurJ1DRAFT_3840 4.72e-50 183.0 COG3832@1|root,COG3832@2|Bacteria,1RDMX@1224|Proteobacteria,2VRWE@28216|Betaproteobacteria,1KNRF@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - Polyketide_cyc2 EH3_k127_1252740_5 1348657.M622_17275 1.59e-12 67.0 COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2VV0X@28216|Betaproteobacteria,2KZUI@206389|Rhodocyclales 206389|Rhodocyclales K Cold shock protein domain - - - ko:K03704 - - - - ko00000,ko03000 - - - CSD EH3_k127_1252740_3 580332.Slit_2870 4.598e-42 159.0 COG0361@1|root,COG0361@2|Bacteria,1MZFU@1224|Proteobacteria,2VU4I@28216|Betaproteobacteria 28216|Betaproteobacteria J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex infA - - ko:K02518 - - - - ko00000,ko03012 - - - eIF-1a EH3_k127_1252740_0 62928.azo1696 1.737e-115 376.0 COG1024@1|root,COG1024@2|Bacteria,1MUJ7@1224|Proteobacteria,2VIP5@28216|Betaproteobacteria,2KVF2@206389|Rhodocyclales 206389|Rhodocyclales I Belongs to the enoyl-CoA hydratase isomerase family - - - - - - - - - - - - ECH_1 EH3_k127_1252740_4 62928.azo1694 2.562e-22 112.0 COG3218@1|root,COG3218@2|Bacteria,1N8NT@1224|Proteobacteria,2VSDM@28216|Betaproteobacteria,2KWR6@206389|Rhodocyclales 206389|Rhodocyclales S ABC-type transport auxiliary lipoprotein component - - - ko:K18480 - M00669 - - ko00000,ko00002,ko02000 3.A.1.27.1 - - ABC_trans_aux EH3_k127_1252740_2 748247.AZKH_2749 6.522e-70 247.0 COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,2VJHA@28216|Betaproteobacteria,2KWAS@206389|Rhodocyclales 206389|Rhodocyclales Q ABC-type transport system involved in resistance to organic solvents, periplasmic component - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD EH3_k127_1252740_1 1000565.METUNv1_00824 5.476e-100 331.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2VJK6@28216|Betaproteobacteria,2KVH1@206389|Rhodocyclales 206389|Rhodocyclales Q ABC-type transport system involved in resistance to organic solvents, ATPase component - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran EH3_k127_1257026_1 75379.Tint_1595 1.604e-205 652.0 COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2VH0Y@28216|Betaproteobacteria,1KJ9F@119065|unclassified Burkholderiales 28216|Betaproteobacteria I Belongs to the enoyl-CoA hydratase isomerase family fadB - 1.1.1.35 ko:K07516 ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212 M00087 R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000 - - - 3HCDH,3HCDH_N,ECH_1 EH3_k127_1257026_2 977880.RALTA_A1474 7.543e-156 501.0 COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2VIE7@28216|Betaproteobacteria,1K1B6@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM Alcohol dehydrogenase zinc-binding domain protein - - - ko:K07119 - - - - ko00000 - - - ADH_N_2,ADH_zinc_N EH3_k127_1257026_3 1097668.BYI23_A012420 3.597e-86 302.0 COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2WGHU@28216|Betaproteobacteria,1K427@119060|Burkholderiaceae 28216|Betaproteobacteria S Belongs to the short-chain dehydrogenases reductases (SDR) family - - - - - - - - - - - - adh_short EH3_k127_1257026_0 1454004.AW11_02479 0.0 1024.0 COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2VHVB@28216|Betaproteobacteria 28216|Betaproteobacteria S Belongs to the peptidase M16 family pqqL - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C EH3_k127_1257026_7 795666.MW7_1972 2.513e-46 171.0 COG0824@1|root,COG0824@2|Bacteria,1N4X2@1224|Proteobacteria,2WES2@28216|Betaproteobacteria,1K7JY@119060|Burkholderiaceae 28216|Betaproteobacteria S Thioesterase-like superfamily - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT EH3_k127_1257026_8 1198452.Jab_2c06350 2.815e-44 170.0 COG2153@1|root,COG2153@2|Bacteria,1MZ86@1224|Proteobacteria,2VMR6@28216|Betaproteobacteria,474GP@75682|Oxalobacteraceae 28216|Betaproteobacteria S Acetyltransferase (GNAT) domain yjcF - - - - - - - - - - - 4HBT,Acetyltransf_10 EH3_k127_1257026_6 522306.CAP2UW1_2474 4.362e-67 237.0 COG3332@1|root,COG3332@2|Bacteria,1RDBS@1224|Proteobacteria,2VQK6@28216|Betaproteobacteria,1KQTN@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria S Transport and Golgi organisation 2 - - - - - - - - - - - - TANGO2 EH3_k127_1257026_4 757424.Hsero_2603 5.835e-71 252.0 COG0404@1|root,COG0404@2|Bacteria,1QV02@1224|Proteobacteria,2WGNT@28216|Betaproteobacteria,473A0@75682|Oxalobacteraceae 28216|Betaproteobacteria E Aminomethyltransferase folate-binding domain ygfZ - - ko:K06980 - - - - ko00000,ko03016 - - - GCV_T,GCV_T_C EH3_k127_1257026_5 497321.C664_01765 5.203e-69 244.0 COG1559@1|root,COG1559@2|Bacteria,1MUQF@1224|Proteobacteria,2VHD4@28216|Betaproteobacteria,2KU8Y@206389|Rhodocyclales 206389|Rhodocyclales S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation mltG - - ko:K07082 - - - - ko00000 - - - YceG EH3_k127_1260905_1 760117.JN27_04900 1.185e-31 126.0 COG0578@1|root,COG0578@2|Bacteria,1MUMY@1224|Proteobacteria,2VN8I@28216|Betaproteobacteria,472EJ@75682|Oxalobacteraceae 28216|Betaproteobacteria C Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family glpD - 1.1.5.3 ko:K00111 ko00564,ko01110,map00564,map01110 - R00848 RC00029 ko00000,ko00001,ko01000 - - - DAO,DAO_C EH3_k127_1260905_0 1144342.PMI40_03475 1.238e-208 655.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1MU31@1224|Proteobacteria,2VJ57@28216|Betaproteobacteria,4724B@75682|Oxalobacteraceae 28216|Betaproteobacteria L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 EH3_k127_1266250_0 1265502.KB905938_gene2445 6.864e-126 406.0 COG0106@1|root,COG0106@2|Bacteria,1MW6S@1224|Proteobacteria,2VI38@28216|Betaproteobacteria,4ABUC@80864|Comamonadaceae 28216|Betaproteobacteria E 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase hisA GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 ko:K01814 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04640 RC00945 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth EH3_k127_1266250_1 864073.HFRIS_002164 2.728e-83 280.0 COG0118@1|root,COG0118@2|Bacteria,1MU4X@1224|Proteobacteria,2VJPI@28216|Betaproteobacteria,4737N@75682|Oxalobacteraceae 28216|Betaproteobacteria E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR hisH - - ko:K02501 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - GATase EH3_k127_1302075_5 358220.C380_04495 1.187e-51 186.0 COG1970@1|root,COG1970@2|Bacteria,1RHG8@1224|Proteobacteria,2VT9K@28216|Betaproteobacteria,4ADW1@80864|Comamonadaceae 28216|Betaproteobacteria M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell mscL - - ko:K03282 - - - - ko00000,ko02000 1.A.22.1 - - MscL EH3_k127_1302075_4 1286631.X805_08750 4.859e-77 266.0 COG0723@1|root,COG0723@2|Bacteria,1RAA2@1224|Proteobacteria,2VK46@28216|Betaproteobacteria,1KJ5I@119065|unclassified Burkholderiales 28216|Betaproteobacteria C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis petA - 1.10.2.2 ko:K00411 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko01000 - - - Rieske,UCR_Fe-S_N EH3_k127_1302075_0 232721.Ajs_0790 2.277e-214 675.0 COG1290@1|root,COG1290@2|Bacteria,1MV97@1224|Proteobacteria,2VHP5@28216|Betaproteobacteria,4AAVH@80864|Comamonadaceae 28216|Betaproteobacteria C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis petB - - ko:K00412 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko03029 - - - Cytochrom_B_C,Cytochrome_B EH3_k127_1302075_3 94624.Bpet0120 6.748e-82 282.0 COG2857@1|root,COG2857@2|Bacteria,1QFU2@1224|Proteobacteria,2VIR6@28216|Betaproteobacteria,3T1QQ@506|Alcaligenaceae 28216|Betaproteobacteria P Cytochrome C1 petC - - ko:K00413 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002 - - - Cytochrom_C1 EH3_k127_1302075_2 426114.THI_2532 2.907e-114 371.0 COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,2VIAW@28216|Betaproteobacteria,1KKCU@119065|unclassified Burkholderiales 28216|Betaproteobacteria O Glutathione S-transferase sspA - - ko:K03599 - - - - ko00000,ko02000,ko03021 1.A.12.3.1 - - GST_C,GST_C_2,GST_N,GST_N_3 EH3_k127_1302075_6 983917.RGE_10520 6.871e-42 158.0 COG2969@1|root,COG2969@2|Bacteria,1MZ2Q@1224|Proteobacteria,2VSGG@28216|Betaproteobacteria,1KKTI@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Starvation protein B sspB - - ko:K03600 - - - - ko00000,ko03021 - - - SspB EH3_k127_1302075_1 497321.C664_09265 1.972e-114 374.0 COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,2VIN9@28216|Betaproteobacteria,2KUVW@206389|Rhodocyclales 206389|Rhodocyclales M UDP-glucose 4-epimerase - - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd EH3_k127_1327805_4 926550.CLDAP_27010 3.258e-86 292.0 COG1850@1|root,COG1850@2|Bacteria,2G8AG@200795|Chloroflexi 200795|Chloroflexi G Ribulose bisphosphate carboxylase large chain, catalytic domain - - 4.1.1.39 ko:K01601 ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200 M00165,M00166,M00532 R00024,R03140 RC00172,RC00859 ko00000,ko00001,ko00002,ko01000 - - - RuBisCO_large EH3_k127_1327805_5 926560.KE387027_gene491 3.279e-45 170.0 COG1917@1|root,COG1917@2|Bacteria 2|Bacteria L Cupin 2, conserved barrel domain protein dddQ - - ko:K11312 - - - - ko00000 - - - Cupin_2,DMSP_lyase EH3_k127_1327805_2 1121127.JAFA01000002_gene1556 5.293e-179 574.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2VI5V@28216|Betaproteobacteria,1KCHF@119060|Burkholderiaceae 28216|Betaproteobacteria MU Outer membrane efflux protein - - - ko:K18139 ko01501,ko02024,map01501,map02024 M00642,M00643,M00647,M00718,M00768,M00822 - - ko00000,ko00001,ko00002,ko01504,ko02000 1.B.17,2.A.6.2 - - OEP EH3_k127_1327805_0 1232410.KI421426_gene1458 0.0 1263.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,42MF6@68525|delta/epsilon subdivisions,2WJVV@28221|Deltaproteobacteria,43U04@69541|Desulfuromonadales 28221|Deltaproteobacteria V TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family - - - ko:K03296,ko:K18138 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2 - - ACR_tran EH3_k127_1327805_3 1232410.KI421426_gene1459 1.252e-121 404.0 COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,42PGM@68525|delta/epsilon subdivisions,2X5J8@28221|Deltaproteobacteria,43SW4@69541|Desulfuromonadales 28221|Deltaproteobacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 EH3_k127_1327805_1 159087.Daro_0465 2.547e-184 643.0 COG1752@1|root,COG4775@1|root,COG1752@2|Bacteria,COG4775@2|Bacteria,1MUM9@1224|Proteobacteria,2VJRI@28216|Betaproteobacteria,2KUW0@206389|Rhodocyclales 206389|Rhodocyclales M Patatin-like phospholipase - - - ko:K07001 - - - - ko00000 - - - Bac_surface_Ag,Patatin EH3_k127_135209_1 375286.mma_0073 5.641e-14 71.0 COG2329@1|root,COG2329@2|Bacteria,1N078@1224|Proteobacteria,2VSX8@28216|Betaproteobacteria,474SJ@75682|Oxalobacteraceae 28216|Betaproteobacteria S enzyme involved in biosynthesis of extracellular polysaccharides - - - - - - - - - - - - ABM EH3_k127_135209_0 497321.C664_17792 1.296e-77 279.0 COG2204@1|root,COG5001@1|root,COG2204@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2VH3V@28216|Betaproteobacteria,2KVQ2@206389|Rhodocyclales 206389|Rhodocyclales T Response regulator receiver modulated diguanylate cyclase phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,PAS,PAS_4,PAS_9,Response_reg EH3_k127_1370921_1 1265502.KB905976_gene510 1.007e-46 176.0 COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,2VHAW@28216|Betaproteobacteria,4ABEZ@80864|Comamonadaceae 28216|Betaproteobacteria I 6-phosphogluconate dehydrogenase, NAD-binding glxR GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 ko:K00020,ko:K00042 ko00280,ko00630,ko01100,map00280,map00630,map01100 - R01745,R01747,R05066 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 EH3_k127_1370921_2 1454004.AW11_03635 5.972e-13 70.0 2CIC8@1|root,33JK4@2|Bacteria,1NH5Z@1224|Proteobacteria,2VYDU@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_1370921_0 1379270.AUXF01000001_gene2209 2.774e-107 353.0 COG0332@1|root,COG0332@2|Bacteria,1ZU9P@142182|Gemmatimonadetes 142182|Gemmatimonadetes I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids - - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C EH3_k127_1400097_0 1458357.BG58_09870 1.557e-81 295.0 COG1538@1|root,COG1538@2|Bacteria,1REC6@1224|Proteobacteria,2VZ9S@28216|Betaproteobacteria,1KBKV@119060|Burkholderiaceae 28216|Betaproteobacteria M Outer membrane efflux protein - - - - - - - - - - - - OEP EH3_k127_1400097_1 1300345.LF41_2212 1.849e-80 278.0 COG1566@1|root,COG1566@2|Bacteria,1NAMI@1224|Proteobacteria,1RP4N@1236|Gammaproteobacteria 1236|Gammaproteobacteria V secretion protein HlyD family yibH GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016020,GO:0033554,GO:0044464,GO:0050896,GO:0051716,GO:0071944 - - - - - - - - - - Biotin_lipoyl_2,HlyD,HlyD_3,HlyD_D23 EH3_k127_140859_0 1304883.KI912532_gene2271 0.0 1159.0 COG0243@1|root,COG3383@1|root,COG0243@2|Bacteria,COG3383@2|Bacteria,1MW3N@1224|Proteobacteria,2VJG2@28216|Betaproteobacteria,2KU82@206389|Rhodocyclales 206389|Rhodocyclales C Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - 1.17.1.9 ko:K00123 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding EH3_k127_1414418_0 640081.Dsui_1393 7.209e-289 893.0 COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2VHQ1@28216|Betaproteobacteria,2KUQA@206389|Rhodocyclales 206389|Rhodocyclales NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - ko:K02454,ko:K02652 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - T2SSE,T2SSE_N EH3_k127_1416985_1 748247.AZKH_p0307 3.179e-61 214.0 COG3185@1|root,COG3185@2|Bacteria,1MUVZ@1224|Proteobacteria,2VJCK@28216|Betaproteobacteria,2KZ15@206389|Rhodocyclales 206389|Rhodocyclales C Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal - - 1.13.11.27 ko:K00457 ko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100 M00044 R01372,R02521 RC00505,RC00738 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Glyoxalase,Glyoxalase_5 EH3_k127_1416985_0 365044.Pnap_1119 1.789e-106 347.0 COG0346@1|root,COG0346@2|Bacteria,1MWCV@1224|Proteobacteria,2VNZN@28216|Betaproteobacteria,4ABGD@80864|Comamonadaceae 28216|Betaproteobacteria E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase EH3_k127_1416985_2 1166948.JPZL01000001_gene2308 3.5e-20 95.0 COG0702@1|root,COG0702@2|Bacteria,1N1C0@1224|Proteobacteria,1S9WS@1236|Gammaproteobacteria 1236|Gammaproteobacteria GM PFAM NADH ubiquinone oxidoreductase complex I intermediate-associated protein 30 - - - - - - - - - - - - CIA30 EH3_k127_1441039_0 292.DM42_7298 5.025e-239 747.0 COG0644@1|root,COG2440@1|root,COG0644@2|Bacteria,COG2440@2|Bacteria,1MVU6@1224|Proteobacteria,2VH37@28216|Betaproteobacteria,1K2GN@119060|Burkholderiaceae 28216|Betaproteobacteria C electron transfer flavoprotein-ubiquinone oxidoreductase etf - 1.5.5.1 ko:K00311 - - - - ko00000,ko01000 - - - ETF_QO,FAD_binding_2,NAD_binding_8 EH3_k127_1441039_1 267608.RSc1568 5.183e-103 342.0 COG1028@1|root,COG1028@2|Bacteria,1MXWI@1224|Proteobacteria,2VJIU@28216|Betaproteobacteria,1K27Y@119060|Burkholderiaceae 28216|Betaproteobacteria IQ short-chain dehydrogenase gno2 - - - - - - - - - - - adh_short_C2 EH3_k127_1441039_2 1532557.JL37_08305 5.664e-19 100.0 COG0824@1|root,COG0824@2|Bacteria,1RHCN@1224|Proteobacteria,2WEE0@28216|Betaproteobacteria,3T9A6@506|Alcaligenaceae 28216|Betaproteobacteria S Thioesterase-like superfamily - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 EH3_k127_1456500_0 1265502.KB905933_gene2025 6.659e-165 531.0 COG0492@1|root,COG0492@2|Bacteria,1MV15@1224|Proteobacteria,2VIVV@28216|Betaproteobacteria,4A9J5@80864|Comamonadaceae 28216|Betaproteobacteria C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family trxB - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_2 EH3_k127_1456500_1 1216976.AX27061_2712 9.795e-154 493.0 COG2079@1|root,COG2079@2|Bacteria,1R5UM@1224|Proteobacteria,2VI2F@28216|Betaproteobacteria,3T1R0@506|Alcaligenaceae 28216|Betaproteobacteria S protein involved in propionate catabolism - - - - - - - - - - - - MmgE_PrpD EH3_k127_1469646_0 1175306.GWL_29410 1.05e-139 451.0 COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,1MU8P@1224|Proteobacteria,2VH6S@28216|Betaproteobacteria,472F0@75682|Oxalobacteraceae 28216|Betaproteobacteria H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ribB - 3.5.4.25,4.1.99.12 ko:K14652 ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110 M00125,M00840 R00425,R07281 RC00293,RC01792,RC01815,RC02504 ko00000,ko00001,ko00002,ko01000 - - - DHBP_synthase,GTP_cyclohydro2 EH3_k127_1469646_3 1097668.BYI23_A007080 4.224e-52 197.0 COG0054@1|root,COG0054@2|Bacteria,1RD9J@1224|Proteobacteria,2VQGE@28216|Betaproteobacteria,1K1B3@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin ribH - 2.5.1.78 ko:K00794 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R04457 RC00960 ko00000,ko00001,ko00002,ko01000 - - - DMRL_synthase EH3_k127_1469646_4 983917.RGE_39080 1.153e-48 179.0 COG0781@1|root,COG0781@2|Bacteria,1RHFZ@1224|Proteobacteria,2VSI6@28216|Betaproteobacteria,1KKV8@119065|unclassified Burkholderiales 28216|Betaproteobacteria K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons nusB - - ko:K03625 - - - - ko00000,ko03009,ko03021 - - - NusB EH3_k127_1469646_2 1123504.JQKD01000008_gene5386 4.222e-102 342.0 COG0611@1|root,COG0611@2|Bacteria,1MU9X@1224|Proteobacteria,2VI0Q@28216|Betaproteobacteria,4AABK@80864|Comamonadaceae 28216|Betaproteobacteria H Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 thiL - 2.7.4.16 ko:K00946 ko00730,ko01100,map00730,map01100 M00127 R00617 RC00002 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C EH3_k127_1469646_6 1095769.CAHF01000013_gene3240 3.178e-40 159.0 COG1267@1|root,COG1267@2|Bacteria,1MZJA@1224|Proteobacteria,2VSP2@28216|Betaproteobacteria,4744W@75682|Oxalobacteraceae 28216|Betaproteobacteria I Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) pgpA - 3.1.3.27 ko:K01095 ko00564,ko01100,map00564,map01100 - R02029 RC00017 ko00000,ko00001,ko01000 - - - PgpA EH3_k127_1469646_5 887062.HGR_16380 5.429e-42 167.0 COG1546@1|root,COG1546@2|Bacteria,1RH2Y@1224|Proteobacteria,2VSQF@28216|Betaproteobacteria,4AE14@80864|Comamonadaceae 28216|Betaproteobacteria S Belongs to the CinA family cinA - 3.5.1.42 ko:K03743 ko00760,map00760 - R02322 RC00100 ko00000,ko00001,ko01000 - - - CinA EH3_k127_1469646_1 395495.Lcho_3194 1.813e-117 389.0 COG0596@1|root,COG0596@2|Bacteria,1MUVB@1224|Proteobacteria,2VIJK@28216|Betaproteobacteria,1KKHT@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Alpha/beta hydrolase family - - 3.8.1.3 ko:K01561 ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120 - R05287 RC00697 ko00000,ko00001,ko01000 - - - Abhydrolase_1 EH3_k127_1474881_3 358220.C380_14945 2.759e-127 414.0 COG1463@1|root,COG1463@2|Bacteria,1R565@1224|Proteobacteria,2VK63@28216|Betaproteobacteria,4AA5X@80864|Comamonadaceae 28216|Betaproteobacteria Q Mammalian cell entry related domain protein - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD EH3_k127_1474881_5 1504672.669786836 2.817e-69 247.0 29DRS@1|root,300PM@2|Bacteria,1RF8B@1224|Proteobacteria,2VR3X@28216|Betaproteobacteria,4AE2G@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_1474881_6 1304883.KI912532_gene3043 7.309e-30 130.0 2E4QE@1|root,32ZIZ@2|Bacteria,1NCEP@1224|Proteobacteria,2VU6H@28216|Betaproteobacteria,2KX56@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - EH3_k127_1474881_0 395495.Lcho_1132 8.912e-200 632.0 COG2379@1|root,COG2379@2|Bacteria,1MVIK@1224|Proteobacteria,2VHXK@28216|Betaproteobacteria,1KIZG@119065|unclassified Burkholderiales 28216|Betaproteobacteria C MOFRL family - - 2.7.1.165 ko:K11529 ko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01120,map01130,map01200 M00346 R08572 RC00002,RC00428 ko00000,ko00001,ko00002,ko01000 - - - DUF4147,MOFRL EH3_k127_1474881_1 305700.B447_06987 8.873e-145 463.0 COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,2VIVI@28216|Betaproteobacteria,2KVR9@206389|Rhodocyclales 206389|Rhodocyclales I COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - - 1.1.1.60 ko:K00042 ko00630,ko01100,map00630,map01100 - R01745,R01747 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 EH3_k127_1474881_4 1472716.KBK24_0132965 2.34e-119 389.0 COG3622@1|root,COG3622@2|Bacteria,1MV53@1224|Proteobacteria,2VJ19@28216|Betaproteobacteria,1K3FC@119060|Burkholderiaceae 28216|Betaproteobacteria G Belongs to the hyi family hyi - 5.3.1.22 ko:K01816 ko00630,ko01100,map00630,map01100 - R01394 RC00511 ko00000,ko00001,ko01000 - - - AP_endonuc_2 EH3_k127_1474881_2 296591.Bpro_4561 8.328e-131 419.0 COG3960@1|root,COG3960@2|Bacteria,1MV88@1224|Proteobacteria,2VHT9@28216|Betaproteobacteria,4A9Q1@80864|Comamonadaceae 28216|Betaproteobacteria S Belongs to the TPP enzyme family gcl - 4.1.1.47 ko:K01608 ko00630,ko01100,map00630,map01100 - R00013 RC00899 ko00000,ko00001,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N EH3_k127_1481982_2 864051.BurJ1DRAFT_2661 1.147e-22 101.0 COG0697@1|root,COG0697@2|Bacteria,1PX5W@1224|Proteobacteria,2VJ2A@28216|Betaproteobacteria,1KK3P@119065|unclassified Burkholderiales 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_1481982_0 1442599.JAAN01000051_gene2675 1.081e-157 503.0 COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,1RSCP@1236|Gammaproteobacteria,1X44U@135614|Xanthomonadales 135614|Xanthomonadales L Transposase IS116/IS110/IS902 family - - - ko:K07486 - - - - ko00000 - - - DEDD_Tnp_IS110,Transposase_20 EH3_k127_1481982_1 1286631.X805_13400 2.449e-47 176.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria 1224|Proteobacteria NT Methyl-accepting chemotaxis protein trg_2 - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - CZB,MCPsignal EH3_k127_1490451_2 292415.Tbd_0092 6.449e-48 173.0 COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,2VSKJ@28216|Betaproteobacteria,1KRSD@119069|Hydrogenophilales 119069|Hydrogenophilales O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter groS - - ko:K04078 - - - - ko00000,ko03029,ko03110 - - - Cpn10 EH3_k127_1490451_0 305700.B447_17094 9.895e-289 893.0 COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,2VIW1@28216|Betaproteobacteria,2KUH8@206389|Rhodocyclales 206389|Rhodocyclales O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groEL - - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 EH3_k127_1490451_1 204773.HEAR1961 9.602e-78 274.0 COG2807@1|root,COG2807@2|Bacteria,1QUCZ@1224|Proteobacteria,2WH3P@28216|Betaproteobacteria,4792T@75682|Oxalobacteraceae 28216|Betaproteobacteria P Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_1499588_0 1366050.N234_02135 0.0 1908.0 COG0247@1|root,COG0277@1|root,COG1146@1|root,COG0247@2|Bacteria,COG0277@2|Bacteria,COG1146@2|Bacteria,1MU43@1224|Proteobacteria,2VHYU@28216|Betaproteobacteria,1K40G@119060|Burkholderiaceae 28216|Betaproteobacteria C FAD linked oxidase domain protein glpCD - - - - - - - - - - - CCG,DUF3400,DUF3683,FAD-oxidase_C,FAD_binding_4,Fer4_8 EH3_k127_1499588_4 864073.HFRIS_021561 9.851e-49 179.0 COG0537@1|root,COG0537@2|Bacteria,1MZVD@1224|Proteobacteria,2VU7S@28216|Betaproteobacteria,474KD@75682|Oxalobacteraceae 28216|Betaproteobacteria FG HIT domain hit - - - - - - - - - - - HIT EH3_k127_1499588_5 204773.HEAR2921 2.448e-47 181.0 COG1040@1|root,COG1040@2|Bacteria,1RHAV@1224|Proteobacteria,2VSPK@28216|Betaproteobacteria,474AH@75682|Oxalobacteraceae 28216|Betaproteobacteria S PFAM Phosphoribosyltransferase comF - - - - - - - - - - - Pribosyltran EH3_k127_1499588_2 1198452.Jab_1c12830 6.629e-80 280.0 COG0500@1|root,COG0500@2|Bacteria,1QUNM@1224|Proteobacteria,2WGKP@28216|Betaproteobacteria,4791D@75682|Oxalobacteraceae 28216|Betaproteobacteria H Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway bioC - 2.1.1.197 ko:K02169 ko00780,ko01100,map00780,map01100 M00572 R09543 RC00003,RC00460 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_11 EH3_k127_1499588_3 497321.C664_15648 5.974e-51 185.0 COG1652@1|root,COG1652@2|Bacteria,1RD8K@1224|Proteobacteria,2VR7C@28216|Betaproteobacteria,2KYN8@206389|Rhodocyclales 206389|Rhodocyclales S Lysin motif - - - - - - - - - - - - BON,LysM EH3_k127_1499588_7 859657.RPSI07_3048 6.938e-25 111.0 COG5488@1|root,COG5488@2|Bacteria,1N5Z9@1224|Proteobacteria,2VU1W@28216|Betaproteobacteria,1K6XS@119060|Burkholderiaceae 28216|Betaproteobacteria S Integral membrane protein (DUF2244) - - - - - - - - - - - - DUF2244 EH3_k127_1499588_1 977880.RALTA_A0287 3.7e-161 515.0 COG1622@1|root,COG2010@1|root,COG1622@2|Bacteria,COG2010@2|Bacteria,1MWHZ@1224|Proteobacteria,2VH9M@28216|Betaproteobacteria,1K2B7@119060|Burkholderiaceae 28216|Betaproteobacteria C Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) coxB - 1.9.3.1 ko:K02275 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.4,3.D.4.6 - - COX2,COX2_TM,Cytochrome_CBB3,OmpA EH3_k127_1499588_6 1502852.FG94_02072 2.015e-26 108.0 COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,2VHGU@28216|Betaproteobacteria,4726R@75682|Oxalobacteraceae 28216|Betaproteobacteria C Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B ctaD - 1.9.3.1 ko:K02274 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6 - - COX1 EH3_k127_1502471_5 1097668.BYI23_B013360 1.298e-86 290.0 COG2207@1|root,COG2207@2|Bacteria,1N0FA@1224|Proteobacteria,2VKR0@28216|Betaproteobacteria,1K2I8@119060|Burkholderiaceae 28216|Betaproteobacteria K Cupin - - - - - - - - - - - - Cupin_6,HTH_18 EH3_k127_1502471_6 316067.Geob_3176 5.472e-48 188.0 COG2010@1|root,COG2010@2|Bacteria,1QXNT@1224|Proteobacteria,430N9@68525|delta/epsilon subdivisions,2WVNM@28221|Deltaproteobacteria,43VA1@69541|Desulfuromonadales 28221|Deltaproteobacteria C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - Cytochrome_CBB3 EH3_k127_1502471_0 744980.TRICHSKD4_0401 5e-324 999.0 COG1653@1|root,COG1653@2|Bacteria,1MV8A@1224|Proteobacteria,2TTPV@28211|Alphaproteobacteria 28211|Alphaproteobacteria G COG1653 ABC-type sugar transport system, periplasmic component MA20_44770 - - ko:K17321 ko02010,map02010 M00607 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.35 - - SBP_bac_1,SBP_bac_8 EH3_k127_1502471_3 744980.TRICHSKD4_0402 1.1e-125 412.0 COG3839@1|root,COG3839@2|Bacteria,1MX8G@1224|Proteobacteria,2TSXF@28211|Alphaproteobacteria 28211|Alphaproteobacteria P Belongs to the ABC transporter superfamily glpS - - ko:K17324 ko02010,map02010 M00607 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.35 - - ABC_tran,TOBE_2 EH3_k127_1502471_1 744980.TRICHSKD4_0403 7.526e-149 481.0 COG3839@1|root,COG3839@2|Bacteria,1MU7W@1224|Proteobacteria,2TQNF@28211|Alphaproteobacteria 28211|Alphaproteobacteria P Belongs to the ABC transporter superfamily MA20_44790 - - ko:K17325 ko02010,map02010 M00607 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.35 - - ABC_tran,TOBE_2 EH3_k127_1502471_2 744980.TRICHSKD4_0404 8.608e-137 441.0 COG1175@1|root,COG1175@2|Bacteria,1MVAZ@1224|Proteobacteria,2TRWF@28211|Alphaproteobacteria 28211|Alphaproteobacteria P COG1175 ABC-type sugar transport systems permease components - - - ko:K17322 ko02010,map02010 M00607 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.35 - - BPD_transp_1 EH3_k127_1502471_4 1469245.JFBG01000044_gene1867 1.617e-89 309.0 COG0395@1|root,COG0395@2|Bacteria,1MVRG@1224|Proteobacteria,1RSNC@1236|Gammaproteobacteria,1X24V@135613|Chromatiales 135613|Chromatiales G Binding-protein-dependent transport system inner membrane component - - - ko:K17323 ko02010,map02010 M00607 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.35 - - BPD_transp_1 EH3_k127_1521529_2 189753.AXAS01000035_gene1275 1.208e-123 409.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TR1D@28211|Alphaproteobacteria,3JS99@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 EH3_k127_1521529_1 1411123.JQNH01000001_gene1781 1.914e-124 423.0 COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria 28211|Alphaproteobacteria P Belongs to the ABC transporter superfamily - - - ko:K02032,ko:K10823 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00239,M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - ABC_tran,oligo_HPY EH3_k127_1521529_0 1411123.JQNH01000001_gene1780 2.159e-129 420.0 COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria 28211|Alphaproteobacteria P Belongs to the ABC transporter superfamily MA20_16760 - - ko:K02031 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - ABC_tran,oligo_HPY EH3_k127_152296_3 267608.RSc2553 3.382e-15 76.0 COG0137@1|root,COG0137@2|Bacteria,1MV0Y@1224|Proteobacteria,2VJ7Z@28216|Betaproteobacteria,1K0VF@119060|Burkholderiaceae 28216|Betaproteobacteria E Belongs to the argininosuccinate synthase family. Type argG GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 ko:K01940 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418 M00029,M00844,M00845 R01954 RC00380,RC00629 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Arginosuc_synth EH3_k127_152296_1 342113.DM82_257 6.312e-116 382.0 COG0812@1|root,COG0812@2|Bacteria,1MXDH@1224|Proteobacteria,2VI7I@28216|Betaproteobacteria,1K195@119060|Burkholderiaceae 28216|Betaproteobacteria M Cell wall formation murB - 1.3.1.98 ko:K00075 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R03191,R03192 RC02639 ko00000,ko00001,ko01000,ko01011 - - - FAD_binding_4,MurB_C EH3_k127_152296_2 292415.Tbd_0876 1.549e-67 243.0 COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2VJEI@28216|Betaproteobacteria,1KRTT@119069|Hydrogenophilales 119069|Hydrogenophilales F Glutamine amidotransferase class-I - - - - - - - - - - - - GATase EH3_k127_152296_0 266264.Rmet_2615 4.48e-160 510.0 COG1154@1|root,COG1154@2|Bacteria,1MUSJ@1224|Proteobacteria,2VHXG@28216|Betaproteobacteria,1K2IB@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,Transket_pyr,Transketolase_C EH3_k127_1535008_2 713586.KB900536_gene532 1.276e-72 256.0 COG2367@1|root,COG2367@2|Bacteria,1R6KF@1224|Proteobacteria 1224|Proteobacteria V Beta-lactamase enzyme family - - 3.5.2.6 ko:K17836 ko00311,ko01130,ko01501,map00311,map01130,map01501 M00627,M00628 R06363 RC01499 ko00000,ko00001,ko00002,ko01000,ko01504 - - - Beta-lactamase2 EH3_k127_1535008_0 314345.SPV1_06999 3.672e-125 419.0 COG2367@1|root,COG2367@2|Bacteria,1R4Y9@1224|Proteobacteria 1224|Proteobacteria V Beta-lactamase - - - - - - - - - - - - Beta-lactamase2 EH3_k127_1535008_1 713586.KB900536_gene534 5.655e-85 289.0 COG0574@1|root,COG0574@2|Bacteria,1P35R@1224|Proteobacteria,1SWBY@1236|Gammaproteobacteria 1236|Gammaproteobacteria G Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - - - - - - - - - - PPDK_N EH3_k127_1548499_2 266264.Rmet_1859 1.187e-106 350.0 COG0411@1|root,COG0411@2|Bacteria,1MX51@1224|Proteobacteria,2VIKW@28216|Betaproteobacteria,1JZVH@119060|Burkholderiaceae 28216|Betaproteobacteria E ABC transporter - - - ko:K01995 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C EH3_k127_1548499_0 1380350.JIAP01000026_gene3445 3.473e-156 503.0 COG3547@1|root,COG3547@2|Bacteria,1QYJU@1224|Proteobacteria,2U1TU@28211|Alphaproteobacteria 28211|Alphaproteobacteria L Transposase - - - - - - - - - - - - DEDD_Tnp_IS110,Transposase_20 EH3_k127_1548499_1 388051.AUFE01000030_gene5076 3.53e-134 438.0 COG4177@1|root,COG4177@2|Bacteria,1MY3V@1224|Proteobacteria,2VJIE@28216|Betaproteobacteria,1K0XJ@119060|Burkholderiaceae 28216|Betaproteobacteria P Belongs to the binding-protein-dependent transport system permease family - - - ko:K01995,ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C,BPD_transp_2 EH3_k127_156014_2 1238182.C882_4227 4.704e-21 99.0 COG2267@1|root,COG2267@2|Bacteria,1R2NQ@1224|Proteobacteria,2TZP8@28211|Alphaproteobacteria,2JZ55@204441|Rhodospirillales 204441|Rhodospirillales I carboxylic ester hydrolase activity - - 3.1.1.85 ko:K02170 ko00780,ko01100,map00780,map01100 M00572 R09725 RC00460,RC00461 ko00000,ko00001,ko00002,ko01000 - - - - EH3_k127_156014_0 762376.AXYL_04367 1.225e-121 408.0 COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2VH25@28216|Betaproteobacteria,3T2F2@506|Alcaligenaceae 28216|Betaproteobacteria H Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide bioF GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.47 ko:K00652 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R03210,R10124 RC00004,RC00039,RC02725 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 EH3_k127_156014_1 1449076.JOOE01000002_gene1056 1.471e-70 249.0 COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,2K04K@204457|Sphingomonadales 204457|Sphingomonadales E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family bioA - 2.6.1.62 ko:K00833 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R03231 RC00006,RC00887 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 EH3_k127_1564326_2 582744.Msip34_2276 3.106e-126 413.0 COG0809@1|root,COG0809@2|Bacteria,1MUH3@1224|Proteobacteria,2VHJF@28216|Betaproteobacteria,2KKJW@206350|Nitrosomonadales 206350|Nitrosomonadales J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA - 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth EH3_k127_1564326_1 1231391.AMZF01000027_gene401 2.452e-181 585.0 COG0343@1|root,COG0343@2|Bacteria,1MUCA@1224|Proteobacteria,2VIRX@28216|Betaproteobacteria,3T20J@506|Alcaligenaceae 28216|Betaproteobacteria F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) tgt - 2.4.2.29 ko:K00773 - - R03789,R10209 RC00063 ko00000,ko01000,ko03016 - - - TGT EH3_k127_1564326_3 402626.Rpic_2958 1.97e-35 138.0 COG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,2VU6T@28216|Betaproteobacteria,1K7SV@119060|Burkholderiaceae 28216|Betaproteobacteria U Preprotein translocase, YajC subunit yajC - - ko:K03210 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - YajC EH3_k127_1564326_0 887898.HMPREF0551_1623 2.104e-246 775.0 COG0342@1|root,COG0342@2|Bacteria,1MV5U@1224|Proteobacteria,2VHKD@28216|Betaproteobacteria,1K02J@119060|Burkholderiaceae 28216|Betaproteobacteria U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD - - ko:K03072 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD-TM1,SecD_SecF,Sec_GG EH3_k127_1580016_0 159087.Daro_3153 7.578e-102 334.0 COG3220@1|root,COG3220@2|Bacteria,1MURE@1224|Proteobacteria,2VKP0@28216|Betaproteobacteria,2KUJ3@206389|Rhodocyclales 206389|Rhodocyclales S Protein of unknown function (DUF692) - - - ko:K09930 - - - - ko00000 - - - DUF692 EH3_k127_1580016_1 159087.Daro_3154 4.258e-83 287.0 COG3219@1|root,COG3219@2|Bacteria,1R8C9@1224|Proteobacteria,2VPVN@28216|Betaproteobacteria,2KWH5@206389|Rhodocyclales 206389|Rhodocyclales S Putative DNA-binding domain - - - ko:K09929 - - - - ko00000 - - - DUF2063 EH3_k127_1580016_2 1121035.AUCH01000017_gene2261 1.352e-70 245.0 COG2259@1|root,COG2259@2|Bacteria,1RDRZ@1224|Proteobacteria,2VS2G@28216|Betaproteobacteria,2KYXS@206389|Rhodocyclales 206389|Rhodocyclales S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX EH3_k127_1592574_1 94624.Bpet2688 7.235e-147 484.0 COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,2VIVG@28216|Betaproteobacteria,3T2RW@506|Alcaligenaceae 28216|Betaproteobacteria E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline argF GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 ko:K00611 ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230 M00029,M00844 R01398 RC00096 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N EH3_k127_1592574_0 76114.ebA5095 1.246e-158 509.0 COG4992@1|root,COG4992@2|Bacteria,1MV3C@1224|Proteobacteria,2VHEB@28216|Betaproteobacteria,2KUN2@206389|Rhodocyclales 206389|Rhodocyclales E acetylornithine aminotransferase argD - 2.6.1.11,2.6.1.17 ko:K00821 ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00028,M00845 R02283,R04475 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 EH3_k127_1592574_2 1288494.EBAPG3_13360 1.487e-27 113.0 COG1982@1|root,COG1982@2|Bacteria,1MWK4@1224|Proteobacteria,2VIJQ@28216|Betaproteobacteria,372U6@32003|Nitrosomonadales 28216|Betaproteobacteria E Orn/Lys/Arg decarboxylase, C-terminal domain - - 4.1.1.19 ko:K01583 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - OKR_DC_1,OKR_DC_1_C EH3_k127_1634424_4 543913.D521_0560 1.446e-98 324.0 COG1840@1|root,COG1840@2|Bacteria,1MUEG@1224|Proteobacteria,2VHI6@28216|Betaproteobacteria,1KQ9Z@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria P Bacterial extracellular solute-binding protein fbpA - - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - SBP_bac_6,SBP_bac_8 EH3_k127_1634424_1 1123377.AUIV01000011_gene2133 4.397e-211 668.0 COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,1RSGI@1236|Gammaproteobacteria,1X5MS@135614|Xanthomonadales 135614|Xanthomonadales Q Oxidoreductase - - - - - - - - - - - - Amino_oxidase EH3_k127_1634424_6 1163617.SCD_n00278 4.127e-34 144.0 COG1238@1|root,COG1238@2|Bacteria,1RHUV@1224|Proteobacteria,2VUM5@28216|Betaproteobacteria 28216|Betaproteobacteria S membrane yqaA - - - - - - - - - - - SNARE_assoc EH3_k127_1634424_3 1095769.CAHF01000006_gene1962 8.496e-123 397.0 COG2086@1|root,COG2086@2|Bacteria,1MVH6@1224|Proteobacteria,2VHXJ@28216|Betaproteobacteria,472D5@75682|Oxalobacteraceae 28216|Betaproteobacteria C Electron transfer flavoprotein, beta subunit etfB - - ko:K03521 - - - - ko00000 - - - ETF EH3_k127_1634424_2 1175306.GWL_09530 7.1e-146 468.0 COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,2VI6W@28216|Betaproteobacteria,47253@75682|Oxalobacteraceae 28216|Betaproteobacteria C Electron transfer flavoprotein, alpha subunit etfA - - ko:K03522 - - - - ko00000,ko04147 - - - ETF,ETF_alpha EH3_k127_1634424_0 1095769.CAHF01000006_gene1964 9.26e-269 841.0 COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2VGZD@28216|Betaproteobacteria,47368@75682|Oxalobacteraceae 28216|Betaproteobacteria I PFAM Acyl-CoA dehydrogenase N terminal, Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain - - - ko:K20035 ko00920,map00920 - R11130 RC03363 ko00000,ko00001,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N EH3_k127_1634424_5 1121878.AUGL01000014_gene1630 1.158e-77 261.0 COG1592@1|root,COG1592@2|Bacteria,1R9WG@1224|Proteobacteria,1S25G@1236|Gammaproteobacteria 1236|Gammaproteobacteria C PFAM Rubrerythrin - - - - - - - - - - - - Rubrerythrin EH3_k127_1740673_0 1163617.SCD_n00177 8.558e-261 812.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2VHFI@28216|Betaproteobacteria 28216|Betaproteobacteria V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family acrD4 - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran EH3_k127_1745735_1 296591.Bpro_4152 6.034e-160 520.0 COG2905@1|root,COG2905@2|Bacteria,1MW8U@1224|Proteobacteria,2VHE1@28216|Betaproteobacteria,4AC6C@80864|Comamonadaceae 28216|Betaproteobacteria T Putative nucleotidyltransferase substrate binding domain - - - ko:K07182 - - - - ko00000 - - - CBS,DUF294,DUF294_C,cNMP_binding EH3_k127_1745735_0 497321.C664_01560 9.677e-234 744.0 COG2176@1|root,COG2176@2|Bacteria,1QUVW@1224|Proteobacteria,2VHZ3@28216|Betaproteobacteria,2KUQR@206389|Rhodocyclales 206389|Rhodocyclales L DNA polymerase III - - 2.7.7.7 ko:K02342 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - RNase_T EH3_k127_17465_7 864051.BurJ1DRAFT_0622 2.219e-51 184.0 COG0192@1|root,COG0192@2|Bacteria,1MUFQ@1224|Proteobacteria,2VH7U@28216|Betaproteobacteria,1KIX0@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme metK - 2.5.1.6 ko:K00789 ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230 M00034,M00035,M00368,M00609 R00177,R04771 RC00021,RC01211 ko00000,ko00001,ko00002,ko01000 - - - S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N EH3_k127_17465_5 1121035.AUCH01000012_gene2963 9.492e-81 279.0 COG1560@1|root,COG1560@2|Bacteria,1Q41N@1224|Proteobacteria,2VKN0@28216|Betaproteobacteria,2KUY8@206389|Rhodocyclales 206389|Rhodocyclales M acyltransferase - - 2.3.1.241 ko:K02517 ko00540,ko01100,map00540,map01100 M00060 R05146 RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Lip_A_acyltrans EH3_k127_17465_4 742823.HMPREF9465_00594 4.199e-94 321.0 COG1560@1|root,COG1560@2|Bacteria,1MVNI@1224|Proteobacteria,2VICZ@28216|Betaproteobacteria,4PQE3@995019|Sutterellaceae 28216|Betaproteobacteria M Bacterial lipid A biosynthesis acyltransferase htrB1 - 2.3.1.241 ko:K02517 ko00540,ko01100,map00540,map01100 M00060 R05146 RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Lip_A_acyltrans EH3_k127_17465_2 864073.HFRIS_021763 1.823e-128 422.0 COG0253@1|root,COG0253@2|Bacteria,1MWDH@1224|Proteobacteria,2VI0C@28216|Betaproteobacteria,47289@75682|Oxalobacteraceae 28216|Betaproteobacteria E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan dapF GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 ko:K01778 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00527 R02735 RC00302 ko00000,ko00001,ko00002,ko01000 - - - DAP_epimerase EH3_k127_17465_6 397945.Aave_0800 2.818e-61 218.0 COG3159@1|root,COG3159@2|Bacteria,1R4BP@1224|Proteobacteria,2VPN6@28216|Betaproteobacteria,4ACME@80864|Comamonadaceae 28216|Betaproteobacteria S Protein of unknown function, DUF484 - - - ko:K09921 - - - - ko00000 - - - DUF484 EH3_k127_17465_3 1502852.FG94_00191 3.703e-94 318.0 COG4973@1|root,COG4973@2|Bacteria,1MUJJ@1224|Proteobacteria,2VJ5V@28216|Betaproteobacteria,473DM@75682|Oxalobacteraceae 28216|Betaproteobacteria D Phage integrase, N-terminal SAM-like domain xerC - - ko:K03733 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase EH3_k127_17465_0 762966.HMPREF9439_00318 5.359e-150 484.0 COG1092@1|root,COG1092@2|Bacteria,1MUGB@1224|Proteobacteria,2VKNG@28216|Betaproteobacteria,4PQTS@995019|Sutterellaceae 28216|Betaproteobacteria J S-adenosylmethionine-dependent methyltransferase rlmI - 2.1.1.191 ko:K06969 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_SAM EH3_k127_17465_1 1532557.JL37_13295 1.208e-147 494.0 COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2VIHH@28216|Betaproteobacteria,3T1V2@506|Alcaligenaceae 28216|Betaproteobacteria S Cobalamin biosynthesis protein CobW yjiA_1 - - - - - - - - - - - CobW_C,cobW EH3_k127_1765717_5 215803.DB30_0841 6.866e-100 361.0 COG2114@1|root,COG3903@1|root,COG2114@2|Bacteria,COG3903@2|Bacteria,1MWPD@1224|Proteobacteria,438M3@68525|delta/epsilon subdivisions,2X1ZS@28221|Deltaproteobacteria,2YX8A@29|Myxococcales 28221|Deltaproteobacteria T AAA domain - - - - - - - - - - - - AAA_22,Guanylate_cyc,TPR_12 EH3_k127_1765717_8 580332.Slit_1694 2.983e-28 132.0 COG1416@1|root,COG1416@2|Bacteria,1RE8C@1224|Proteobacteria,2VV8B@28216|Betaproteobacteria 28216|Betaproteobacteria S DsrE/DsrF-like family - - - ko:K09004 - - - - ko00000 - - - DrsE EH3_k127_1765717_2 1163617.SCD_n00411 1.361e-160 530.0 COG0577@1|root,COG0577@2|Bacteria,1PBKH@1224|Proteobacteria,2VKXU@28216|Betaproteobacteria 28216|Betaproteobacteria V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD EH3_k127_1765717_0 522306.CAP2UW1_4287 1.621e-171 546.0 COG0577@1|root,COG0577@2|Bacteria,1PBKH@1224|Proteobacteria,2VIIH@28216|Betaproteobacteria 28216|Betaproteobacteria V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD EH3_k127_1765717_6 1304883.KI912532_gene1605 5.181e-96 340.0 COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,2VJBY@28216|Betaproteobacteria,2KVSB@206389|Rhodocyclales 206389|Rhodocyclales V ATPases associated with a variety of cellular activities - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran EH3_k127_1765717_1 1454004.AW11_00067 4.045e-163 522.0 COG0845@1|root,COG0845@2|Bacteria,1MU8D@1224|Proteobacteria,2VJR5@28216|Betaproteobacteria 28216|Betaproteobacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K02005 - - - - ko00000 - - - HlyD_D23 EH3_k127_1765717_9 1173028.ANKO01000020_gene5476 8.628e-21 98.0 COG2442@1|root,COG2442@2|Bacteria,1G9FC@1117|Cyanobacteria,1HDDA@1150|Oscillatoriales 1117|Cyanobacteria S Protein of unknown function (DUF433) - - - - - - - - - - - - DUF433 EH3_k127_1765717_7 1173028.ANKO01000020_gene5475 1.436e-30 124.0 COG4634@1|root,COG4634@2|Bacteria,1GA03@1117|Cyanobacteria,1HDVT@1150|Oscillatoriales 1117|Cyanobacteria - - - - - - - - - - - - - - - EH3_k127_1765717_4 864051.BurJ1DRAFT_4611 9.352e-111 374.0 COG0515@1|root,COG0515@2|Bacteria,1MVEU@1224|Proteobacteria,2VIWE@28216|Betaproteobacteria,1KJXJ@119065|unclassified Burkholderiales 28216|Betaproteobacteria KLT Protein tyrosine kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase EH3_k127_1765717_10 326427.Cagg_0357 1.056e-07 63.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria,2G71Q@200795|Chloroflexi,376GZ@32061|Chloroflexia 32061|Chloroflexia NU SMART Tetratricopeptide domain protein - - - - - - - - - - - - CHAT,NB-ARC,TPR_10,TPR_12,TPR_16,TPR_7 EH3_k127_1765717_3 1392838.AWNM01000097_gene196 2.184e-144 474.0 COG0178@1|root,COG0178@2|Bacteria,1MW0W@1224|Proteobacteria,2VI87@28216|Betaproteobacteria,3T1BB@506|Alcaligenaceae 28216|Betaproteobacteria L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA2 - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran EH3_k127_1780012_5 384676.PSEEN4906 3.044e-05 58.0 COG2982@1|root,COG2982@2|Bacteria,1MUAN@1224|Proteobacteria,1RNZM@1236|Gammaproteobacteria 1236|Gammaproteobacteria M protein involved in outer membrane biogenesis yhjG GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0032386,GO:0032879,GO:0032880,GO:0033157,GO:0044464,GO:0050789,GO:0051049,GO:0051223,GO:0060341,GO:0065007,GO:0070201,GO:0071944,GO:0090087,GO:0090313,GO:1903533,GO:1903827,GO:1905475 - ko:K07290 - - - - ko00000 9.B.121 - - AsmA EH3_k127_1780012_2 264198.Reut_A3335 3.465e-22 102.0 2E5SP@1|root,330H2@2|Bacteria,1Q9TF@1224|Proteobacteria,2WDRU@28216|Betaproteobacteria,1KAVW@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - Gly-zipper_YMGG EH3_k127_1780012_0 388051.AUFE01000017_gene5758 1.183e-76 263.0 28M5B@1|root,2ZAJ4@2|Bacteria,1R7Y9@1224|Proteobacteria,2VSMK@28216|Betaproteobacteria,1K5H6@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_1780012_3 243233.MCA3011 1.248e-21 104.0 COG1483@1|root,COG1483@2|Bacteria,1MX1G@1224|Proteobacteria,1RZYB@1236|Gammaproteobacteria,1XFKQ@135618|Methylococcales 135618|Methylococcales S Protein of unknown function (DUF499) - - - ko:K06922 - - - - ko00000 - - - DUF499 EH3_k127_1780012_4 1265502.KB905949_gene936 1.208e-05 48.0 COG1483@1|root,COG1483@2|Bacteria,1MX1G@1224|Proteobacteria,2VHB3@28216|Betaproteobacteria,4ACCG@80864|Comamonadaceae 28216|Betaproteobacteria S Protein of unknown function (DUF499) - - - ko:K06922 - - - - ko00000 - - - DUF499 EH3_k127_1780012_1 1458427.BAWN01000007_gene496 4.883e-59 205.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2VH71@28216|Betaproteobacteria,4ABR0@80864|Comamonadaceae 28216|Betaproteobacteria C Belongs to the aldehyde dehydrogenase family - - 1.2.1.28 ko:K00141 ko00622,ko00623,ko00627,ko01100,ko01120,ko01220,map00622,map00623,map00627,map01100,map01120,map01220 M00537,M00538 R01293,R01419,R05289,R05663,R05664,R07667 RC00075 ko00000,ko00001,ko00002,ko01000 - - - Aldedh EH3_k127_178072_0 977880.RALTA_A0770 5.478e-203 637.0 COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,2VJ5Q@28216|Betaproteobacteria,1K0UC@119060|Burkholderiaceae 28216|Betaproteobacteria L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrA - 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV EH3_k127_178072_1 757424.Hsero_3693 4.304e-142 461.0 COG0077@1|root,COG1605@1|root,COG0077@2|Bacteria,COG1605@2|Bacteria,1MU60@1224|Proteobacteria,2VJEV@28216|Betaproteobacteria,472K2@75682|Oxalobacteraceae 28216|Betaproteobacteria E TIGRFAM chorismate mutase domain of proteobacterial P-protein, clade 2 pheA - 4.2.1.51,4.2.1.91,5.4.99.5 ko:K01713,ko:K14170 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00024,M00025 R00691,R01373,R01715 RC00360,RC03116 ko00000,ko00001,ko00002,ko01000 - - - ACT,CM_2,PDT EH3_k127_178072_2 977880.RALTA_A0774 4.301e-123 400.0 COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,2VIPQ@28216|Betaproteobacteria,1K2E3@119060|Burkholderiaceae 28216|Betaproteobacteria E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC2 - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 EH3_k127_18324_1 1100720.ALKN01000028_gene2606 3.006e-58 206.0 COG0438@1|root,COG0438@2|Bacteria,1RB3J@1224|Proteobacteria,2VJNY@28216|Betaproteobacteria,4ACVF@80864|Comamonadaceae 28216|Betaproteobacteria M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 EH3_k127_18324_2 522306.CAP2UW1_2429 4.304e-44 162.0 COG1359@1|root,COG1359@2|Bacteria,1RI7W@1224|Proteobacteria 1224|Proteobacteria S Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the conversion of (4S)-4-hydroxy-5- phosphonooxypentane-2,3-dione (P-DPD) to 3-hydroxy-5- phosphonooxypentane-2,4-dione (P-HPD) lsrG GO:0002952,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016853,GO:0044424,GO:0044444,GO:0044464,GO:0055114 5.3.1.32 ko:K11530 ko02024,map02024 - - - ko00000,ko00001,ko01000 - - - ABM EH3_k127_18324_0 1454004.AW11_03482 8.53e-188 597.0 COG0370@1|root,COG0370@2|Bacteria,1MUZC@1224|Proteobacteria,2VIRG@28216|Betaproteobacteria 28216|Betaproteobacteria P Ferrous iron transport protein B - - - ko:K04759 - - - - ko00000,ko02000 9.A.8.1 - - FeoB_C,FeoB_N,Gate EH3_k127_1850436_0 1286631.X805_23180 6.63e-196 614.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2VHT0@28216|Betaproteobacteria,1KIW7@119065|unclassified Burkholderiales 28216|Betaproteobacteria I acyl-CoA dehydrogenase - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N EH3_k127_1851680_0 1144319.PMI16_03843 3.36e-289 894.0 COG0445@1|root,COG0445@2|Bacteria,1MU6F@1224|Proteobacteria,2VIGG@28216|Betaproteobacteria,472AG@75682|Oxalobacteraceae 28216|Betaproteobacteria D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 gidA - - ko:K03495 - - R08701 RC00053,RC00209,RC00870 ko00000,ko03016,ko03036 - - - GIDA,GIDA_assoc EH3_k127_1851680_1 1265502.KB905940_gene2985 2.134e-157 505.0 COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2VI90@28216|Betaproteobacteria,4A9Y2@80864|Comamonadaceae 28216|Betaproteobacteria C alcohol dehydrogenase gbd1 - 1.1.1.1,1.1.1.61 ko:K00043,ko:K13954 ko00010,ko00071,ko00350,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00010,map00071,map00350,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01200,map01220 - R00623,R00754,R01644,R04880,R05233,R05234,R06917,R06927 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649 ko00000,ko00001,ko01000 - - - Fe-ADH EH3_k127_185704_2 296591.Bpro_4700 1.93e-94 312.0 COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2VI90@28216|Betaproteobacteria,4AD0R@80864|Comamonadaceae 28216|Betaproteobacteria C Iron-containing alcohol dehydrogenase - - - - - - - - - - - - Fe-ADH EH3_k127_185704_1 596154.Alide2_4513 1.337e-104 347.0 COG2071@1|root,COG2071@2|Bacteria,1MV8E@1224|Proteobacteria,2VMMI@28216|Betaproteobacteria,4AAN2@80864|Comamonadaceae 28216|Betaproteobacteria S Peptidase C26 - - 4.1.3.27 ko:K01658,ko:K07010 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000,ko01002 - - - Peptidase_C26 EH3_k127_185704_0 296591.Bpro_4702 1.496e-204 647.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2VK5V@28216|Betaproteobacteria,4AAPR@80864|Comamonadaceae 28216|Betaproteobacteria C Aldehyde dehydrogenase family - - - - - - - - - - - - Aldedh EH3_k127_185704_3 318167.Sfri_0867 2.082e-42 159.0 COG3118@1|root,COG3118@2|Bacteria,1RHUA@1224|Proteobacteria,1S64W@1236|Gammaproteobacteria,2QBJP@267890|Shewanellaceae 1236|Gammaproteobacteria O Belongs to the thioredoxin family trxC GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.8.1.8 ko:K03672 - - - - ko00000,ko01000,ko03110 - - iAF1260.b2582,iAPECO1_1312.APECO1_3950,iB21_1397.B21_02440,iBWG_1329.BWG_2346,iE2348C_1286.E2348C_2859,iEC55989_1330.EC55989_2872,iECABU_c1320.ECABU_c28840,iECBD_1354.ECBD_1098,iECB_1328.ECB_02476,iECDH10B_1368.ECDH10B_2750,iECDH1ME8569_1439.ECDH1ME8569_2509,iECD_1391.ECD_02476,iECH74115_1262.ECH74115_3819,iECIAI1_1343.ECIAI1_2700,iECIAI39_1322.ECIAI39_2790,iECO103_1326.ECO103_3161,iECO111_1330.ECO111_3308,iECO26_1355.ECO26_3629,iECOK1_1307.ECOK1_2926,iECP_1309.ECP_2584,iECS88_1305.ECS88_2757,iECSE_1348.ECSE_2871,iECSF_1327.ECSF_2421,iECSP_1301.ECSP_3529,iECW_1372.ECW_m2811,iECs_1301.ECs3448,iEKO11_1354.EKO11_1151,iEcDH1_1363.EcDH1_1086,iEcE24377_1341.EcE24377A_2869,iEcHS_1320.EcHS_A2739,iEcSMS35_1347.EcSMS35_2735,iEcolC_1368.EcolC_1095,iG2583_1286.G2583_3165,iJO1366.b2582,iLF82_1304.LF82_2324,iNRG857_1313.NRG857_12825,iSDY_1059.SDY_2825,iSFV_1184.SFV_2645,iSF_1195.SF2644,iSFxv_1172.SFxv_2901,iSSON_1240.SSON_2708,iS_1188.S2817,iSbBS512_1146.SbBS512_E2954,iUMN146_1321.UM146_03805,iUMNK88_1353.UMNK88_3235,iUTI89_1310.UTI89_C2905,iWFL_1372.ECW_m2811,iY75_1357.Y75_RS13495,iZ_1308.Z3867,ic_1306.c3107 Thioredoxin EH3_k127_1861251_1 204773.HEAR0139 1.234e-112 369.0 COG0606@1|root,COG0606@2|Bacteria,1MU4R@1224|Proteobacteria,2VHRV@28216|Betaproteobacteria,472HN@75682|Oxalobacteraceae 28216|Betaproteobacteria O Magnesium chelatase, subunit ChlI C-terminal comM - - ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C EH3_k127_1861251_4 1218074.BAXZ01000015_gene3263 4.445e-17 83.0 COG2960@1|root,COG2960@2|Bacteria,1N7AH@1224|Proteobacteria,2VVR4@28216|Betaproteobacteria,1K9GB@119060|Burkholderiaceae 28216|Betaproteobacteria S Membrane fusogenic activity yqiC - - ko:K09806 - - - - ko00000 - - - BMFP EH3_k127_1861251_2 742159.HMPREF0004_3647 1.127e-61 221.0 2C5U9@1|root,318BZ@2|Bacteria,1RK4D@1224|Proteobacteria,2VKK4@28216|Betaproteobacteria,3T5MX@506|Alcaligenaceae 28216|Betaproteobacteria S Bacterial protein of unknown function (Gcw_chp) - - - - - - - - - - - - Gcw_chp EH3_k127_1861251_3 1458275.AZ34_01100 2.464e-59 206.0 COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2VSEZ@28216|Betaproteobacteria,4AE4W@80864|Comamonadaceae 28216|Betaproteobacteria K Belongs to the P(II) protein family glnK - - ko:K04752 - - - - ko00000 - - - P-II EH3_k127_1861251_0 887062.HGR_10842 6.082e-133 435.0 COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2VJ8B@28216|Betaproteobacteria,4AB9B@80864|Comamonadaceae 28216|Betaproteobacteria P ammonium transporter amtB - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp EH3_k127_194814_2 338966.Ppro_1990 8.473e-58 205.0 COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,42QV3@68525|delta/epsilon subdivisions,2WMT2@28221|Deltaproteobacteria,43VDA@69541|Desulfuromonadales 28221|Deltaproteobacteria G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - GSDH EH3_k127_194814_0 1380394.JADL01000014_gene209 4.493e-101 345.0 COG0154@1|root,COG0154@2|Bacteria,1MWRI@1224|Proteobacteria,2TTJU@28211|Alphaproteobacteria,2JQU6@204441|Rhodospirillales 204441|Rhodospirillales J COG0154 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases - - - - - - - - - - - - Amidase EH3_k127_194814_4 864051.BurJ1DRAFT_2070 3.573e-40 161.0 2DN0A@1|root,32UPR@2|Bacteria,1N1BR@1224|Proteobacteria,2VRRJ@28216|Betaproteobacteria,1KKVZ@119065|unclassified Burkholderiales 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_194814_3 1218074.BAXZ01000005_gene1471 3.294e-54 207.0 COG1607@1|root,COG1607@2|Bacteria,1MZAZ@1224|Proteobacteria,2VR9M@28216|Betaproteobacteria,1K7QJ@119060|Burkholderiaceae 28216|Betaproteobacteria I Thioesterase superfamily protein yciA - - ko:K10806 ko01040,map01040 - - - ko00000,ko00001,ko01000,ko01004 - - - 4HBT EH3_k127_194814_1 883126.HMPREF9710_03007 7.918e-83 287.0 COG0300@1|root,COG0300@2|Bacteria,1R7MT@1224|Proteobacteria,2WF7I@28216|Betaproteobacteria 28216|Betaproteobacteria S KR domain - - - - - - - - - - - - adh_short EH3_k127_194814_5 266264.Rmet_0391 1.586e-32 132.0 COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2WGG3@28216|Betaproteobacteria,1K0VC@119060|Burkholderiaceae 28216|Betaproteobacteria V abc transporter atm1 - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran EH3_k127_195647_0 1192124.LIG30_1156 7.591e-80 273.0 COG0593@1|root,COG0593@2|Bacteria,1MU5H@1224|Proteobacteria,2VHH0@28216|Betaproteobacteria,1K152@119060|Burkholderiaceae 28216|Betaproteobacteria L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids dnaA - - ko:K02313 ko02020,ko04112,map02020,map04112 - - - ko00000,ko00001,ko03032,ko03036 - - - Bac_DnaA,Bac_DnaA_C,DnaA_N EH3_k127_195647_3 937774.TEQUI_0627 1.479e-14 78.0 COG0230@1|root,COG0230@2|Bacteria,1NGGS@1224|Proteobacteria,2VXTS@28216|Betaproteobacteria,3T4QS@506|Alcaligenaceae 28216|Betaproteobacteria J Belongs to the bacterial ribosomal protein bL34 family rpmH - - ko:K02914 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L34 EH3_k127_195647_4 469610.HMPREF0189_00017 0.0003058 49.0 COG0594@1|root,COG0594@2|Bacteria,1NN8H@1224|Proteobacteria,2VYMR@28216|Betaproteobacteria 28216|Betaproteobacteria J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme rnpA - 3.1.26.5 ko:K03536 - - - - ko00000,ko01000,ko03016 - - - Ribonuclease_P EH3_k127_195647_1 742823.HMPREF9465_00667 2.706e-28 116.0 COG0759@1|root,COG0759@2|Bacteria,1N6U4@1224|Proteobacteria,2VVTR@28216|Betaproteobacteria,4PRCS@995019|Sutterellaceae 28216|Betaproteobacteria S Could be involved in insertion of integral membrane proteins into the membrane yidD - - ko:K08998 - - - - ko00000 - - - Haemolytic EH3_k127_195647_2 1095769.CAHF01000018_gene803 2.824e-16 88.0 COG0706@1|root,COG0706@2|Bacteria,1MV5M@1224|Proteobacteria,2VHIA@28216|Betaproteobacteria,473G0@75682|Oxalobacteraceae 28216|Betaproteobacteria U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins yidC - - ko:K03217 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP,YidC_periplas EH3_k127_1992028_2 1562701.BBOF01000061_gene1724 1.055e-41 154.0 COG1077@1|root,COG1077@2|Bacteria,1MUMW@1224|Proteobacteria,2VIR9@28216|Betaproteobacteria,1K4JH@119060|Burkholderiaceae 28216|Betaproteobacteria D Cell shape determining protein, MreB Mrl family mreB - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl EH3_k127_1992028_3 762966.HMPREF9439_00349 3.361e-31 124.0 COG0721@1|root,COG0721@2|Bacteria,1MZQP@1224|Proteobacteria,2VUFB@28216|Betaproteobacteria,4PRAC@995019|Sutterellaceae 28216|Betaproteobacteria F Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) gatC - 6.3.5.6,6.3.5.7 ko:K02435 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - Glu-tRNAGln EH3_k127_1992028_1 742823.HMPREF9465_00642 1.52e-205 656.0 COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2VIG3@28216|Betaproteobacteria,4PQTJ@995019|Sutterellaceae 28216|Betaproteobacteria F Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) gatA - 6.3.5.6,6.3.5.7 ko:K02433 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - Amidase EH3_k127_1992028_0 123899.JPQP01000019_gene2458 1.678e-223 705.0 COG0064@1|root,COG0064@2|Bacteria,1MUKG@1224|Proteobacteria,2VI3A@28216|Betaproteobacteria,3T1MB@506|Alcaligenaceae 28216|Betaproteobacteria J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) gatB - 6.3.5.6,6.3.5.7 ko:K02434 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - GatB_N,GatB_Yqey EH3_k127_1992028_4 216591.BCAS0251 3.423e-27 119.0 2DBPG@1|root,2ZA96@2|Bacteria,1QVNF@1224|Proteobacteria,2VP5D@28216|Betaproteobacteria,1K3DF@119060|Burkholderiaceae 28216|Betaproteobacteria S Domain of unknown function (DUF4382) - - - - - - - - - - - - CarboxypepD_reg,DUF4382 EH3_k127_2045093_2 1100721.ALKO01000027_gene366 2.845e-82 278.0 COG0697@1|root,COG0697@2|Bacteria,1PB22@1224|Proteobacteria,2VYG5@28216|Betaproteobacteria,4AHYC@80864|Comamonadaceae 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_2045093_1 1157708.KB907462_gene897 6.968e-190 599.0 COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,2VHRS@28216|Betaproteobacteria,4AB2U@80864|Comamonadaceae 28216|Betaproteobacteria I PFAM fatty acid desaturase - - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - DDE_Tnp_ISL3,FA_desaturase EH3_k127_2045093_3 365046.Rta_34010 9.997e-63 223.0 COG2863@1|root,COG2863@2|Bacteria,1PFFQ@1224|Proteobacteria,2VXBF@28216|Betaproteobacteria,4AFPX@80864|Comamonadaceae 28216|Betaproteobacteria C cytochrome - - - - - - - - - - - - Cytochrome_CBB3 EH3_k127_2045093_0 365046.Rta_34020 1.007e-192 618.0 COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,2VIRC@28216|Betaproteobacteria,4ACEX@80864|Comamonadaceae 28216|Betaproteobacteria G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - GSDH,SGL EH3_k127_2045093_4 1122604.JONR01000045_gene2488 4.974e-22 100.0 COG4188@1|root,COG4188@2|Bacteria,1MW2N@1224|Proteobacteria,1RYN6@1236|Gammaproteobacteria,1X8F4@135614|Xanthomonadales 135614|Xanthomonadales S Alpha/beta hydrolase family - - - - - - - - - - - - PAF-AH_p_II EH3_k127_207212_2 864051.BurJ1DRAFT_4910 3.135e-112 368.0 COG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,2VHIK@28216|Betaproteobacteria,1KIZ4@119065|unclassified Burkholderiales 28216|Betaproteobacteria O XdhC Rossmann domain - - - ko:K07402 - - - - ko00000 - - - XdhC_C,XdhC_CoxI EH3_k127_207212_0 757424.Hsero_2925 5.465e-296 934.0 COG2352@1|root,COG2352@2|Bacteria,1MUD5@1224|Proteobacteria,2VI9F@28216|Betaproteobacteria,472ZX@75682|Oxalobacteraceae 28216|Betaproteobacteria H Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle ppc - 4.1.1.31 ko:K01595 ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200 M00168,M00170,M00171,M00172,M00173,M00346,M00374 R00345 RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPcase EH3_k127_207212_4 639283.Snov_3257 2.275e-85 304.0 COG3386@1|root,COG3386@2|Bacteria,1MWTR@1224|Proteobacteria,2V93J@28211|Alphaproteobacteria,3F1WS@335928|Xanthobacteraceae 28211|Alphaproteobacteria G SMP-30/Gluconolaconase/LRE-like region - - - ko:K14274 ko00040,map00040 - R02427 RC00713 ko00000,ko00001,ko01000 - - - SGL EH3_k127_207212_5 887898.HMPREF0551_1015 6.038e-84 286.0 COG3279@1|root,COG3279@2|Bacteria,1MUE8@1224|Proteobacteria,2WEFP@28216|Betaproteobacteria,1KAB7@119060|Burkholderiaceae 28216|Betaproteobacteria KT LytTr DNA-binding domain algR - - ko:K08083 ko02020,map02020 M00493 - - ko00000,ko00001,ko00002,ko02022 - - - LytTR,Response_reg EH3_k127_207212_7 1005048.CFU_2934 1.052e-71 255.0 COG2972@1|root,COG2972@2|Bacteria,1MXVQ@1224|Proteobacteria,2VH9S@28216|Betaproteobacteria,473HB@75682|Oxalobacteraceae 28216|Betaproteobacteria T Histidine kinase algZ - 2.7.13.3 ko:K08082 ko02020,map02020 M00493 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - His_kinase EH3_k127_207212_1 93220.LV28_21135 4.713e-206 652.0 COG0165@1|root,COG0165@2|Bacteria,1MUTU@1224|Proteobacteria,2VH47@28216|Betaproteobacteria,1K0Y8@119060|Burkholderiaceae 28216|Betaproteobacteria E argininosuccinate lyase argH - 4.3.2.1 ko:K01755 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230 M00029,M00844,M00845 R01086 RC00445,RC00447 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ASL_C2,Lyase_1 EH3_k127_207212_3 864051.BurJ1DRAFT_3682 6.812e-92 306.0 COG4665@1|root,COG4665@2|Bacteria,1RHBW@1224|Proteobacteria,2VRCB@28216|Betaproteobacteria,1KKVD@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q Tripartite ATP-independent periplasmic transporter DctQ - - - - - - - - - - - - DctQ EH3_k127_207212_6 1286631.X805_12740 5.626e-83 280.0 COG4664@1|root,COG4664@2|Bacteria,1R4MZ@1224|Proteobacteria,2VHHD@28216|Betaproteobacteria,1KJ5Z@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q TRAP dicarboxylate transporter, DctM subunit - - - ko:K03299 - - - - ko00000,ko02000 2.A.8 - - DctM EH3_k127_2101560_2 1265502.KB905940_gene2975 2.391e-67 233.0 COG0084@1|root,COG0084@2|Bacteria,1MUC0@1224|Proteobacteria,2VHCT@28216|Betaproteobacteria,4AAED@80864|Comamonadaceae 28216|Betaproteobacteria L TIGRFAM hydrolase, TatD family ycfH - - ko:K03424 - - - - ko00000,ko01000 - - - TatD_DNase EH3_k127_2101560_4 1500894.JQNN01000001_gene1174 3.462e-47 173.0 COG3215@1|root,COG3215@2|Bacteria,1RGWZ@1224|Proteobacteria,2VT2B@28216|Betaproteobacteria,474ID@75682|Oxalobacteraceae 28216|Betaproteobacteria NU PilZ domain pilZ - - ko:K02676 - - - - ko00000,ko02035,ko02044 - - - PilZ EH3_k127_2101560_3 1218075.BAYA01000001_gene69 1.604e-64 235.0 COG0470@1|root,COG0470@2|Bacteria,1MY1W@1224|Proteobacteria,2VNED@28216|Betaproteobacteria,1K0JG@119060|Burkholderiaceae 28216|Betaproteobacteria L dna polymerase iii holB - 2.7.7.7 ko:K02341 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNApol3-delta_C EH3_k127_2101560_1 497321.C664_01760 6.797e-70 246.0 COG0125@1|root,COG0125@2|Bacteria,1MV9C@1224|Proteobacteria,2VQ24@28216|Betaproteobacteria,2KW0K@206389|Rhodocyclales 206389|Rhodocyclales F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis tmk - 2.7.4.9 ko:K00943 ko00240,ko01100,map00240,map01100 M00053 R02094,R02098 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Thymidylate_kin EH3_k127_2101560_0 640081.Dsui_2656 2.551e-106 354.0 COG1559@1|root,COG1559@2|Bacteria,1MUQF@1224|Proteobacteria,2VHD4@28216|Betaproteobacteria,2KU8Y@206389|Rhodocyclales 206389|Rhodocyclales S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation mltG - - ko:K07082 - - - - ko00000 - - - YceG EH3_k127_215270_2 987059.RBXJA2T_05258 1.289e-92 308.0 COG1902@1|root,COG1902@2|Bacteria,1MVIX@1224|Proteobacteria,2VH2S@28216|Betaproteobacteria,1KJIJ@119065|unclassified Burkholderiales 28216|Betaproteobacteria C NADH flavin oxidoreductase NADH oxidase nemA GO:0000003,GO:0000302,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009607,GO:0009620,GO:0009694,GO:0009695,GO:0009791,GO:0009908,GO:0009987,GO:0010035,GO:0010193,GO:0010817,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016629,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0042221,GO:0042445,GO:0042446,GO:0042493,GO:0042579,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046677,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0055114,GO:0061458,GO:0065007,GO:0065008,GO:0071704,GO:0072330,GO:0090567,GO:0099402,GO:1901576,GO:1901700 - ko:K10680 ko00633,ko01120,map00633,map01120 - R08014,R08017,R08042 RC00250 ko00000,ko00001,ko01000 - - - Oxidored_FMN EH3_k127_215270_1 314345.SPV1_05647 8.737e-109 357.0 COG0412@1|root,COG0412@2|Bacteria,1MW7S@1224|Proteobacteria 1224|Proteobacteria Q dienelactone hydrolase MA20_42490 - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH EH3_k127_215270_0 296591.Bpro_3095 1.007e-132 428.0 COG1295@1|root,COG1295@2|Bacteria,1NH82@1224|Proteobacteria,2VJW7@28216|Betaproteobacteria,4AAJH@80864|Comamonadaceae 28216|Betaproteobacteria S Virulence factor BrkB - - - - - - - - - - - - Virul_fac_BrkB EH3_k127_215270_3 338969.Rfer_2088 5.798e-64 226.0 COG0500@1|root,COG2226@2|Bacteria,1RAAC@1224|Proteobacteria,2VQJ2@28216|Betaproteobacteria 28216|Betaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_11 EH3_k127_218727_0 1095769.CAHF01000004_gene2749 0.0 1712.0 COG0085@1|root,COG0085@2|Bacteria,1MUC4@1224|Proteobacteria,2VHF3@28216|Betaproteobacteria,472V5@75682|Oxalobacteraceae 28216|Betaproteobacteria K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoB - 2.7.7.6 ko:K03043 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 EH3_k127_218727_1 1392838.AWNM01000002_gene1729 1.79e-239 744.0 COG0086@1|root,COG0086@2|Bacteria,1MU3M@1224|Proteobacteria,2VIF3@28216|Betaproteobacteria,3T1ZH@506|Alcaligenaceae 28216|Betaproteobacteria K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC - 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 EH3_k127_2211581_0 94624.Bpet4353 2.595e-185 584.0 COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2VHKU@28216|Betaproteobacteria 28216|Betaproteobacteria S protein conserved in bacteria - - - ko:K07793 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.80.1 - - TctA EH3_k127_2211581_1 94624.Bpet4352 4.019e-58 207.0 2BKYI@1|root,32FF5@2|Bacteria,1MY1A@1224|Proteobacteria,2VRUQ@28216|Betaproteobacteria 28216|Betaproteobacteria S Tripartite tricarboxylate transporter TctB family - - - - - - - - - - - - TctB EH3_k127_2211581_2 94624.Bpet4351 1.917e-55 196.0 COG3181@1|root,COG3181@2|Bacteria,1MXEX@1224|Proteobacteria,2VKSV@28216|Betaproteobacteria 28216|Betaproteobacteria S Tripartite tricarboxylate transporter family receptor - - - - - - - - - - - - TctC EH3_k127_2219260_0 395495.Lcho_1552 1.195e-79 278.0 COG4235@1|root,COG4235@2|Bacteria,1MY4J@1224|Proteobacteria,2VQ05@28216|Betaproteobacteria,1KKAY@119065|unclassified Burkholderiales 28216|Betaproteobacteria O Cytochrome c-type biogenesis protein cycH - - ko:K02200 - - - - ko00000 - - - TPR_16,TPR_2 EH3_k127_2221673_1 1245471.PCA10_50440 2.901e-144 469.0 COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,1RN2C@1236|Gammaproteobacteria,1YDB4@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria P Heavy-metal-associated domain copA - 3.6.3.54 ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - E1-E2_ATPase,HMA,Hydrolase EH3_k127_2221673_2 762376.AXYL_05034 1.768e-48 187.0 294JI@1|root,2ZRZ3@2|Bacteria,1REGD@1224|Proteobacteria,2VRDG@28216|Betaproteobacteria,3T44H@506|Alcaligenaceae 28216|Betaproteobacteria S Domain of unknown function (DUF4863) - - - - - - - - - - - - DUF4863 EH3_k127_2221673_0 1265502.KB905932_gene1920 3.054e-185 591.0 COG0168@1|root,COG0168@2|Bacteria,1MUIJ@1224|Proteobacteria,2VH82@28216|Betaproteobacteria,4AAKU@80864|Comamonadaceae 28216|Betaproteobacteria P Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA trkH - - ko:K03498 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkH EH3_k127_2222860_3 396588.Tgr7_3236 5.354e-37 140.0 COG2022@1|root,COG2022@2|Bacteria,1N0N5@1224|Proteobacteria,1RMPD@1236|Gammaproteobacteria,1WW65@135613|Chromatiales 135613|Chromatiales H Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S thiG - 2.8.1.10 ko:K03149 ko00730,ko01100,map00730,map01100 - R10247 RC03096,RC03097,RC03461 ko00000,ko00001,ko01000 - - - ThiG EH3_k127_2222860_4 360910.BAV0453 1.176e-19 89.0 COG2104@1|root,COG2104@2|Bacteria,1NG8E@1224|Proteobacteria,2VVVB@28216|Betaproteobacteria,3T4V6@506|Alcaligenaceae 28216|Betaproteobacteria H Sulfur transfer protein involved in thiamine biosynthesis thiS - - ko:K03154 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS EH3_k127_2222860_6 935837.JAEK01000090_gene445 5.98e-05 46.0 29S70@1|root,30DBH@2|Bacteria,1UB40@1239|Firmicutes,4IMGK@91061|Bacilli,1ZK45@1386|Bacillus 91061|Bacilli - - - - - - - - - - - - - - - EH3_k127_2222860_1 477184.KYC_02879 1.862e-164 526.0 COG0683@1|root,COG0683@2|Bacteria,1MXR4@1224|Proteobacteria,2VJXR@28216|Betaproteobacteria,3T1CM@506|Alcaligenaceae 28216|Betaproteobacteria E branched-chain amino acid - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 EH3_k127_2222860_0 159087.Daro_3552 3.311e-207 650.0 COG0027@1|root,COG0027@2|Bacteria,1N3KA@1224|Proteobacteria,2VH4M@28216|Betaproteobacteria,2KV39@206389|Rhodocyclales 206389|Rhodocyclales F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate purT - 2.1.2.2 ko:K08289 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp,Epimerase EH3_k127_2222860_2 640081.Dsui_0998 5.039e-127 429.0 COG1194@1|root,COG1194@2|Bacteria,1MUD4@1224|Proteobacteria,2VH21@28216|Betaproteobacteria,2KUFV@206389|Rhodocyclales 206389|Rhodocyclales L A G-specific mutY - - ko:K03575 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - EndIII_4Fe-2S,HhH-GPD,NUDIX_4 EH3_k127_2222860_5 240302.BN982_02469 1.222e-09 59.0 COG3338@1|root,COG3338@2|Bacteria,1V16J@1239|Firmicutes,4HA62@91061|Bacilli 91061|Bacilli P carbonic anhydrase cah - 4.2.1.1 ko:K01674 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Carb_anhydrase EH3_k127_2222928_3 323848.Nmul_A2158 5.078e-16 79.0 COG0430@1|root,COG0430@2|Bacteria,1MX7Q@1224|Proteobacteria,2VHYS@28216|Betaproteobacteria,373YE@32003|Nitrosomonadales 28216|Betaproteobacteria A Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP rtcA - 6.5.1.4 ko:K01974 - - - - ko00000,ko01000 - - - RTC,RTC_insert EH3_k127_2222928_1 864051.BurJ1DRAFT_4529 1.484e-106 350.0 COG0586@1|root,COG0586@2|Bacteria,1MX4M@1224|Proteobacteria,2VJCP@28216|Betaproteobacteria,1KJ7C@119065|unclassified Burkholderiales 28216|Betaproteobacteria S PFAM SNARE associated Golgi protein dedA - - ko:K03975 - - - - ko00000 - - - SNARE_assoc EH3_k127_2222928_2 1173020.Cha6605_4325 4.3e-71 248.0 COG0730@1|root,COG0730@2|Bacteria,1G72I@1117|Cyanobacteria 1117|Cyanobacteria S Sulfite exporter TauE/SafE - - - ko:K07090 - - - - ko00000 - - - TauE EH3_k127_2222928_0 1095769.CAHF01000011_gene2640 6.701e-121 392.0 COG1354@1|root,COG1354@2|Bacteria,1MVCN@1224|Proteobacteria,2VKE7@28216|Betaproteobacteria,473K8@75682|Oxalobacteraceae 28216|Betaproteobacteria D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves scpA - - ko:K05896 - - - - ko00000,ko03036 - - - SMC_ScpA EH3_k127_2223475_3 568706.BN118_2514 9.488e-81 274.0 COG0678@1|root,COG0678@2|Bacteria,1MU0H@1224|Proteobacteria,2VQDH@28216|Betaproteobacteria,3T3QF@506|Alcaligenaceae 28216|Betaproteobacteria O Peroxiredoxin ahp1 - 1.11.1.15 ko:K03386 ko04214,map04214 - - - ko00000,ko00001,ko01000,ko04147 - - - Redoxin EH3_k127_2223475_1 1124983.PFLCHA0_c51550 1.441e-228 723.0 COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,1RMIT@1236|Gammaproteobacteria,1YMJW@136843|Pseudomonas fluorescens group 1236|Gammaproteobacteria M gamma-glutamyltransferase ggt - 2.3.2.2,3.4.19.13 ko:K00681 ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100 - R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935 RC00064,RC00090,RC00096 ko00000,ko00001,ko01000,ko01002 - - - G_glu_transpept EH3_k127_2223475_2 3988.XP_002534847.1 1.87e-113 371.0 KOG1199@1|root,KOG1199@2759|Eukaryota 2759|Eukaryota S 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity - - 1.1.1.178,1.1.1.35 ko:K08683 ko00280,ko01100,ko01110,ko01130,ko05010,map00280,map01100,map01110,map01130,map05010 - R04203 RC00525 ko00000,ko00001,ko01000,ko03029,ko04147 - - - adh_short EH3_k127_2223475_0 522306.CAP2UW1_1893 9.243e-310 961.0 COG4670@1|root,COG4670@2|Bacteria,1MUJW@1224|Proteobacteria,2VH8B@28216|Betaproteobacteria,1KR3Z@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria I Malonate decarboxylase, alpha subunit, transporter - - 2.8.3.1 ko:K01026 ko00620,ko00640,ko00643,ko01100,ko01120,map00620,map00640,map00643,map01100,map01120 - R00928,R01449,R05508 RC00012,RC00014,RC00137 ko00000,ko00001,ko01000 - - - CoA_trans EH3_k127_2223475_4 1323663.AROI01000003_gene2288 1.815e-67 231.0 COG1853@1|root,COG1853@2|Bacteria,1NB1B@1224|Proteobacteria,1S55P@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Flavin reductase - - - - - - - - - - - - Flavin_Reduct EH3_k127_2227273_0 983917.RGE_15820 3.071e-150 490.0 COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,2VHYA@28216|Betaproteobacteria,1KKFP@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Cys/Met metabolism PLP-dependent enzyme metY - 2.5.1.49 ko:K01740 ko00270,ko01100,map00270,map01100 - R01287,R04859 RC00020,RC02821,RC02848 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP EH3_k127_2227273_1 1131553.JIBI01000053_gene33 1.771e-132 433.0 COG2267@1|root,COG2267@2|Bacteria,1QU3E@1224|Proteobacteria,2WGMS@28216|Betaproteobacteria,3721D@32003|Nitrosomonadales 28216|Betaproteobacteria I Belongs to the peptidase S33 family pip - 3.4.11.5 ko:K01259 ko00330,map00330 - R00135 - ko00000,ko00001,ko01000,ko01002 - - - Abhydrolase_1 EH3_k127_2227273_3 1286093.C266_19675 4.178e-75 276.0 COG3622@1|root,COG3622@2|Bacteria,1MV53@1224|Proteobacteria,2VJ19@28216|Betaproteobacteria,1K048@119060|Burkholderiaceae 28216|Betaproteobacteria G Belongs to the hyi family hyi2 - 5.3.1.22,5.3.1.35 ko:K01816,ko:K22131 ko00630,ko01100,map00630,map01100 - R01394 RC00511 ko00000,ko00001,ko01000 - - - AP_endonuc_2 EH3_k127_2227273_5 266264.Rmet_1135 3.124e-59 210.0 COG0517@1|root,COG0517@2|Bacteria,1N0H3@1224|Proteobacteria,2VQEB@28216|Betaproteobacteria,1K2SM@119060|Burkholderiaceae 28216|Betaproteobacteria C CBS domain containing protein - - - - - - - - - - - - CBS EH3_k127_2227273_4 243090.RB9278 1.537e-62 231.0 COG0415@1|root,COG3380@1|root,COG0415@2|Bacteria,COG3380@2|Bacteria,2IYQD@203682|Planctomycetes 203682|Planctomycetes L FAD dependent oxidoreductase - - - ko:K06955 - - - - ko00000 - - - Amino_oxidase,DNA_photolyase,NAD_binding_8 EH3_k127_2227273_2 1265502.KB905936_gene2640 1.331e-100 349.0 COG0082@1|root,COG0082@2|Bacteria,1MU98@1224|Proteobacteria,2VJA4@28216|Betaproteobacteria,4AADA@80864|Comamonadaceae 28216|Betaproteobacteria E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system aroC - 4.2.3.5 ko:K01736 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01714 RC00586 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_synt EH3_k127_2236309_18 1286093.C266_00760 1.882e-44 173.0 COG0494@1|root,COG0494@2|Bacteria,1RCZM@1224|Proteobacteria,2VHTP@28216|Betaproteobacteria,1K70J@119060|Burkholderiaceae 28216|Betaproteobacteria L Belongs to the Nudix hydrolase family mutT - 3.6.1.55 ko:K03574 - - - - ko00000,ko01000,ko03400 - - - NUDIX,TMP-TENI EH3_k127_2236309_14 477184.KYC_19169 1.157e-117 385.0 COG2607@1|root,COG2607@2|Bacteria,1MVMX@1224|Proteobacteria,2VID5@28216|Betaproteobacteria,3T2KQ@506|Alcaligenaceae 28216|Betaproteobacteria S ATPase (AAA - - - ko:K06923 - - - - ko00000 - - - DUF815 EH3_k127_2236309_5 1100720.ALKN01000030_gene1105 3.605e-170 542.0 COG1364@1|root,COG1364@2|Bacteria,1MU0T@1224|Proteobacteria,2VJ84@28216|Betaproteobacteria,4AACJ@80864|Comamonadaceae 28216|Betaproteobacteria E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate argJ - 2.3.1.1,2.3.1.35 ko:K00620 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R00259,R02282 RC00004,RC00064 ko00000,ko00001,ko00002,ko01000 - - - ArgJ EH3_k127_2236309_0 1095769.CAHF01000014_gene2899 0.0 1317.0 COG0653@1|root,COG0653@2|Bacteria,1MUJZ@1224|Proteobacteria,2VHDH@28216|Betaproteobacteria,472M3@75682|Oxalobacteraceae 28216|Betaproteobacteria U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA - - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW EH3_k127_2236309_15 1095769.CAHF01000014_gene2900 1.361e-89 304.0 COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2VKR8@28216|Betaproteobacteria,4735M@75682|Oxalobacteraceae 28216|Betaproteobacteria M Peptidase family M23 - - 3.4.24.75 ko:K08259 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23 EH3_k127_2236309_11 1144319.PMI16_01533 6.064e-133 432.0 COG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,2VHI8@28216|Betaproteobacteria,473EU@75682|Oxalobacteraceae 28216|Betaproteobacteria M Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis lpxC - 3.5.1.108 ko:K02535 ko00540,ko01100,map00540,map01100 M00060 R04587 RC00166,RC00300 ko00000,ko00001,ko00002,ko01000,ko01005 - - - LpxC EH3_k127_2236309_16 62928.azo1420 1.58e-75 261.0 COG5473@1|root,COG5473@2|Bacteria,1MVRU@1224|Proteobacteria,2VK3K@28216|Betaproteobacteria,2KXUE@206389|Rhodocyclales 206389|Rhodocyclales S Predicted integral membrane protein (DUF2189) - - - - - - - - - - - - DUF2189 EH3_k127_2236309_4 381666.H16_A3268 3.35e-179 568.0 COG0206@1|root,COG0206@2|Bacteria,1MV2X@1224|Proteobacteria,2VH0S@28216|Betaproteobacteria,1K1ET@119060|Burkholderiaceae 28216|Betaproteobacteria D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity ftsZ - - ko:K03531 ko04112,map04112 - - - ko00000,ko00001,ko02048,ko03036,ko04812 - - - FtsZ_C,Tubulin EH3_k127_2236309_2 795666.MW7_3106 6.271e-200 638.0 COG0849@1|root,COG0849@2|Bacteria,1MUSR@1224|Proteobacteria,2VGZP@28216|Betaproteobacteria,1K1ZW@119060|Burkholderiaceae 28216|Betaproteobacteria D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring ftsA - - ko:K03590 ko04112,map04112 - - - ko00000,ko00001,ko03036,ko04812 - - - FtsA,SHS2_FTSA EH3_k127_2236309_17 1144342.PMI40_03014 5.088e-45 184.0 COG1589@1|root,COG1589@2|Bacteria,1N0T7@1224|Proteobacteria,2VPPY@28216|Betaproteobacteria,478IM@75682|Oxalobacteraceae 28216|Betaproteobacteria D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly ftsQ - - ko:K03589 ko04112,map04112 - - - ko00000,ko00001,ko03036 - - - FtsQ,POTRA_1 EH3_k127_2236309_12 388051.AUFE01000028_gene5023 1.121e-120 404.0 COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,2VHIW@28216|Betaproteobacteria,1K3MM@119060|Burkholderiaceae 28216|Betaproteobacteria F Cell wall formation ddl - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N EH3_k127_2236309_1 1218075.BAYA01000012_gene3701 3.109e-215 678.0 COG0773@1|root,COG0773@2|Bacteria,1MV68@1224|Proteobacteria,2VIKZ@28216|Betaproteobacteria,1K0U8@119060|Burkholderiaceae 28216|Betaproteobacteria M Belongs to the MurCDEF family murC - 6.3.2.8 ko:K01924 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R03193 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M EH3_k127_2236309_13 983917.RGE_09540 2.9e-120 396.0 COG0707@1|root,COG0707@2|Bacteria,1MVIB@1224|Proteobacteria,2VH32@28216|Betaproteobacteria,1KJSU@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) murG - 2.4.1.227 ko:K02563 ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112 - R05032,R05662 RC00005,RC00049 ko00000,ko00001,ko01000,ko01011 - GT28 - Glyco_tran_28_C,Glyco_transf_28 EH3_k127_2236309_9 1071679.BG57_08610 8.353e-144 469.0 COG0772@1|root,COG0772@2|Bacteria,1MVDB@1224|Proteobacteria,2VI5Q@28216|Betaproteobacteria,1K0M1@119060|Burkholderiaceae 28216|Betaproteobacteria D Peptidoglycan polymerase that is essential for cell division ftsW - - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FTSW_RODA_SPOVE EH3_k127_2236309_7 1095769.CAHF01000014_gene2910 5.232e-162 542.0 COG0771@1|root,COG0771@2|Bacteria,1MVYD@1224|Proteobacteria,2VHJ1@28216|Betaproteobacteria,472DH@75682|Oxalobacteraceae 28216|Betaproteobacteria M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) murD - 6.3.2.9 ko:K01925 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R02783 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase_C,Mur_ligase_M EH3_k127_2236309_3 511.JT27_10860 2.88e-185 608.0 COG0472@1|root,COG0472@2|Bacteria,1MUTK@1224|Proteobacteria,2VHAP@28216|Betaproteobacteria,3T2IH@506|Alcaligenaceae 28216|Betaproteobacteria M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan mraY - 2.7.8.13 ko:K01000 ko00550,ko01100,ko01502,map00550,map01100,map01502 - R05629,R05630 RC00002,RC02753 ko00000,ko00001,ko01000,ko01011 9.B.146 - - Glycos_transf_4,MraY_sig1 EH3_k127_2236309_6 243233.MCA1294 8.924e-168 540.0 COG0770@1|root,COG0770@2|Bacteria,1QTSF@1224|Proteobacteria,1RMGD@1236|Gammaproteobacteria,1XERH@135618|Methylococcales 135618|Methylococcales M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein murF - 6.3.2.10 ko:K01929 ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502 - R04573,R04617 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M EH3_k127_2236309_10 93220.LV28_11475 7.559e-135 447.0 COG0769@1|root,COG0769@2|Bacteria,1MU6P@1224|Proteobacteria,2WGFS@28216|Betaproteobacteria,1K2YV@119060|Burkholderiaceae 28216|Betaproteobacteria M Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan murE - 6.3.2.13 ko:K01928 ko00300,ko00550,map00300,map00550 - R02788 RC00064,RC00090 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M EH3_k127_2236309_8 375286.mma_3021 7.79e-151 486.0 COG0768@1|root,COG0768@2|Bacteria,1MUNY@1224|Proteobacteria,2VIZM@28216|Betaproteobacteria,472P4@75682|Oxalobacteraceae 28216|Betaproteobacteria D Catalyzes cross-linking of the peptidoglycan cell wall at the division septum ftsI - 3.4.16.4 ko:K03587 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011,ko03036 - - - PBP_dimer,Transpeptidase EH3_k127_2241906_3 1123393.KB891330_gene851 1.718e-08 59.0 COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,2VW39@28216|Betaproteobacteria,1KS2K@119069|Hydrogenophilales 119069|Hydrogenophilales Q MlaD protein - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD EH3_k127_2241906_1 1123392.AQWL01000002_gene2003 1.043e-82 300.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2VJK6@28216|Betaproteobacteria,1KRJG@119069|Hydrogenophilales 119069|Hydrogenophilales Q ABC transporter - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran EH3_k127_2241906_2 1123393.KB891330_gene853 3.457e-79 278.0 COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2VH5N@28216|Betaproteobacteria,1KSQF@119069|Hydrogenophilales 119069|Hydrogenophilales Q Permease MlaE - - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE EH3_k127_2241906_0 1265502.KB905929_gene2253 6.353e-285 886.0 COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,2VKDZ@28216|Betaproteobacteria,4A9W6@80864|Comamonadaceae 28216|Betaproteobacteria C aconitate hydratase acnA - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C EH3_k127_2245385_6 1173024.KI912148_gene3523 1.577e-61 217.0 COG2403@1|root,COG2403@2|Bacteria,1G1FF@1117|Cyanobacteria 1117|Cyanobacteria S cyclic 2,3-diphosphoglycerate synthetase activity - - - - - - - - - - - - cobW EH3_k127_2245385_0 402626.Rpic_0107 2.996e-196 617.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2VJ5I@28216|Betaproteobacteria,1K6EI@119060|Burkholderiaceae 28216|Betaproteobacteria C acyl-CoA dehydrogenase - - - ko:K11731 ko00281,map00281 - R08089 RC01893 ko00000,ko00001,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N EH3_k127_2245385_1 1234595.C725_2432 4.8e-165 535.0 COG0183@1|root,COG0183@2|Bacteria,1MVPC@1224|Proteobacteria,2VEVD@28211|Alphaproteobacteria 28211|Alphaproteobacteria I acetyl-coa acetyltransferase - - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - - EH3_k127_2245385_4 1100720.ALKN01000007_gene3065 7.401e-129 425.0 COG0559@1|root,COG0559@2|Bacteria,1MU25@1224|Proteobacteria,2VNQX@28216|Betaproteobacteria,4AC0P@80864|Comamonadaceae 28216|Betaproteobacteria E Belongs to the binding-protein-dependent transport system permease family - - - ko:K01997 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_2245385_2 338969.Rfer_3500 7.507e-145 467.0 COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2VKYI@28216|Betaproteobacteria,4A9Y9@80864|Comamonadaceae 28216|Betaproteobacteria E Belongs to the binding-protein-dependent transport system permease family - - - ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_2245385_5 614083.AWQR01000001_gene3117 3.899e-116 397.0 COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2VJRS@28216|Betaproteobacteria,4AAWC@80864|Comamonadaceae 28216|Betaproteobacteria E Branched-chain amino acid ATP-binding cassette transporter - - - ko:K01995 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C EH3_k127_2245385_3 614083.AWQR01000001_gene3116 1.996e-129 431.0 COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2VJNC@28216|Betaproteobacteria,4ABEP@80864|Comamonadaceae 28216|Betaproteobacteria E AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01996 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran EH3_k127_2245385_7 338969.Rfer_3503 2.049e-56 214.0 COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2VI0U@28216|Betaproteobacteria,4A9UR@80864|Comamonadaceae 28216|Betaproteobacteria I AMP-dependent synthetase and ligase - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding EH3_k127_2246162_11 757424.Hsero_1433 1.576e-33 130.0 COG0501@1|root,COG0501@2|Bacteria,1MUXT@1224|Proteobacteria,2VI1Y@28216|Betaproteobacteria,4725U@75682|Oxalobacteraceae 28216|Betaproteobacteria O CAAX prenyl protease N-terminal, five membrane helices htpX_2 - 3.4.24.84 ko:K06013 ko00900,ko01130,map00900,map01130 - R09845 RC00141 ko00000,ko00001,ko01000,ko01002,ko04147 - - - Peptidase_M48,Peptidase_M48_N EH3_k127_2246162_10 75379.Tint_0937 3.639e-37 144.0 COG2154@1|root,COG2154@2|Bacteria,1MZ5Q@1224|Proteobacteria,2VVZF@28216|Betaproteobacteria,1KMTC@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Pterin 4 alpha carbinolamine dehydratase - - 4.2.1.96 ko:K01724 ko00790,map00790 - R04734 RC01208 ko00000,ko00001,ko01000,ko04147 - - - Pterin_4a EH3_k127_2246162_3 742823.HMPREF9465_00309 6.069e-81 284.0 COG1162@1|root,COG1162@2|Bacteria,1MUEF@1224|Proteobacteria,2VINY@28216|Betaproteobacteria,4PQN5@995019|Sutterellaceae 28216|Betaproteobacteria S One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit rsgA - 3.1.3.100 ko:K06949 ko00730,ko01100,map00730,map01100 - R00615,R02135 RC00002,RC00017 ko00000,ko00001,ko01000,ko03009 - - - RsgA_GTPase EH3_k127_2246162_12 1218084.BBJK01000102_gene6428 5.791e-25 111.0 2E35S@1|root,32Y5P@2|Bacteria,1N6WS@1224|Proteobacteria,2VX2T@28216|Betaproteobacteria,1K8JC@119060|Burkholderiaceae 28216|Betaproteobacteria S Putative prokaryotic signal transducing protein - - - - - - - - - - - - DUF2007 EH3_k127_2246162_5 93220.LV28_23000 5.443e-72 254.0 COG1270@1|root,COG1270@2|Bacteria,1MWCK@1224|Proteobacteria,2VH7X@28216|Betaproteobacteria,1K1N4@119060|Burkholderiaceae 28216|Betaproteobacteria H Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group cobD - 6.3.1.10 ko:K02227 ko00860,ko01100,map00860,map01100 M00122 R06529,R07302 RC00090,RC00096 ko00000,ko00001,ko00002,ko01000 - - - CobD_Cbib EH3_k127_2246162_4 204773.HEAR0627 3.366e-72 257.0 COG0494@1|root,COG0494@2|Bacteria,1RD2C@1224|Proteobacteria,2VREV@28216|Betaproteobacteria,472Q4@75682|Oxalobacteraceae 28216|Betaproteobacteria L NUDIX domain - - - - - - - - - - - - NUDIX EH3_k127_2246162_7 1159870.KB907784_gene3198 1.373e-59 208.0 COG0335@1|root,COG0335@2|Bacteria,1RH3A@1224|Proteobacteria,2VR2S@28216|Betaproteobacteria,3T3UC@506|Alcaligenaceae 28216|Betaproteobacteria J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site rplS - - ko:K02884 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L19 EH3_k127_2246162_1 1437824.BN940_11651 3.932e-93 315.0 COG0336@1|root,COG0336@2|Bacteria,1MUN1@1224|Proteobacteria,2VHPY@28216|Betaproteobacteria,3T2Q6@506|Alcaligenaceae 28216|Betaproteobacteria J Belongs to the RNA methyltransferase TrmD family trmD - 2.1.1.228 ko:K00554 - - R00597 RC00003,RC00334 ko00000,ko01000,ko03016 - - - tRNA_m1G_MT EH3_k127_2246162_8 556268.OFAG_01445 1.398e-44 168.0 COG0806@1|root,COG0806@2|Bacteria,1MYUH@1224|Proteobacteria,2WG31@28216|Betaproteobacteria,473FU@75682|Oxalobacteraceae 28216|Betaproteobacteria J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes rimM - - ko:K02860 - - - - ko00000,ko03009 - - - PRC,RimM EH3_k127_2246162_9 266264.Rmet_0748 1.11e-38 146.0 COG0228@1|root,COG0228@2|Bacteria,1MZCT@1224|Proteobacteria,2VTYP@28216|Betaproteobacteria,1K8BW@119060|Burkholderiaceae 28216|Betaproteobacteria J Belongs to the bacterial ribosomal protein bS16 family rpsP - - ko:K02959 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S16 EH3_k127_2246162_13 1231391.AMZF01000118_gene3366 1.388e-23 105.0 COG2314@1|root,COG2314@2|Bacteria,1PKJT@1224|Proteobacteria,2W8VH@28216|Betaproteobacteria,3T4FH@506|Alcaligenaceae 28216|Betaproteobacteria S TM2 domain - - - - - - - - - - - - TM2 EH3_k127_2246162_0 1265502.KB905930_gene1419 1.75e-134 447.0 COG1533@1|root,COG1533@2|Bacteria,1MW0H@1224|Proteobacteria,2VIYE@28216|Betaproteobacteria,4AAGA@80864|Comamonadaceae 28216|Betaproteobacteria L PFAM Radical SAM domain protein splB - - - - - - - - - - - Radical_SAM EH3_k127_2246162_6 261292.Nit79A3_2480 1.409e-71 250.0 COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2VJ6T@28216|Betaproteobacteria,372WA@32003|Nitrosomonadales 28216|Betaproteobacteria C Cysteine-rich domain - - - - - - - - - - - - CCG,DUF3501 EH3_k127_2246162_2 1038869.AXAN01000019_gene6782 3.8e-86 288.0 COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2VJ6T@28216|Betaproteobacteria,1K4DB@119060|Burkholderiaceae 28216|Betaproteobacteria C Cysteine-rich domain - - - - - - - - - - - - CCG,DUF3501 EH3_k127_2246348_2 1187851.A33M_3194 1.823e-153 492.0 COG1024@1|root,COG1024@2|Bacteria,1QY95@1224|Proteobacteria,2U4PY@28211|Alphaproteobacteria 28211|Alphaproteobacteria I Enoyl-CoA hydratase/isomerase - - 3.7.1.21 ko:K07539 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 M00541 R05593,R05594,R10696 RC01430,RC01431,RC03237 ko00000,ko00001,ko00002,ko01000 - - - ECH_1 EH3_k127_2246348_1 1121918.ARWE01000001_gene3595 2.172e-155 497.0 COG1064@1|root,COG1064@2|Bacteria,1QVIH@1224|Proteobacteria,42NMX@68525|delta/epsilon subdivisions,2WJGB@28221|Deltaproteobacteria 28221|Deltaproteobacteria C Alcohol dehydrogenase GroES-like domain bamQ - 1.1.1.368 ko:K07538 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 M00541 R05581 RC00850 ko00000,ko00001,ko00002,ko01000 - - - ADH_N,ADH_zinc_N EH3_k127_2246348_0 85643.Tmz1t_2955 6.237e-184 589.0 COG0674@1|root,COG1014@1|root,COG0674@2|Bacteria,COG1014@2|Bacteria,1NBSJ@1224|Proteobacteria,2VIEB@28216|Betaproteobacteria,2KY1I@206389|Rhodocyclales 206389|Rhodocyclales C Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg - - 1.2.7.11,1.2.7.3 ko:K00174 ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200 M00009,M00011,M00173,M00620 R01196,R01197 RC00004,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - POR,POR_N EH3_k127_225101_4 1131553.JIBI01000015_gene672 4.101e-37 156.0 COG2267@1|root,COG2267@2|Bacteria,1N2KV@1224|Proteobacteria 1224|Proteobacteria I Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 EH3_k127_225101_1 85643.Tmz1t_2222 1.581e-183 585.0 COG4783@1|root,COG4783@2|Bacteria,1MVFV@1224|Proteobacteria,2VJK2@28216|Betaproteobacteria,2KUNA@206389|Rhodocyclales 206389|Rhodocyclales S Peptidase family M48 - - - - - - - - - - - - Peptidase_M48 EH3_k127_225101_0 911045.PSE_p0260 8.379e-226 713.0 COG3119@1|root,COG3119@2|Bacteria,1MV0B@1224|Proteobacteria,2TRI6@28211|Alphaproteobacteria 28211|Alphaproteobacteria P COG3119 Arylsulfatase A and related enzymes MA20_44000 - - - - - - - - - - - DUF4976,Sulfatase EH3_k127_225101_2 1123504.JQKD01000016_gene1975 1.368e-117 388.0 COG3181@1|root,COG3181@2|Bacteria,1R43T@1224|Proteobacteria,2VHTA@28216|Betaproteobacteria,4ACZZ@80864|Comamonadaceae 28216|Betaproteobacteria S PFAM conserved - - - - - - - - - - - - TctC EH3_k127_225101_3 1192124.LIG30_3750 1.968e-45 170.0 COG0288@1|root,COG0288@2|Bacteria,1NGFN@1224|Proteobacteria,2VIBS@28216|Betaproteobacteria,1K3GU@119060|Burkholderiaceae 28216|Betaproteobacteria P Reversible hydration of carbon dioxide can - 4.2.1.1 ko:K01673 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Acetyltransf_1,Pro_CA EH3_k127_2252934_0 762966.HMPREF9439_02420 3.248e-144 466.0 COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2W19X@28216|Betaproteobacteria,4PS3D@995019|Sutterellaceae 28216|Betaproteobacteria P ATPases associated with a variety of cellular activities - - - ko:K02032 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - ABC_tran,oligo_HPY EH3_k127_2252934_1 1454004.AW11_00495 4.47e-143 466.0 COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,2VH6H@28216|Betaproteobacteria 28216|Betaproteobacteria G Glucose sorbosone yliI - - ko:K21430 - - - - ko00000,ko01000 - - - GSDH EH3_k127_2252934_6 338969.Rfer_1129 4.077e-69 258.0 COG1073@1|root,COG1073@2|Bacteria,1RIWI@1224|Proteobacteria,2VJF9@28216|Betaproteobacteria,4A9WE@80864|Comamonadaceae 28216|Betaproteobacteria S Serine aminopeptidase, S33 - - - ko:K06889 - - - - ko00000 - - - Hydrolase_4 EH3_k127_2252934_3 1122180.Lokhon_01647 6.629e-116 391.0 COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,2V9SA@28211|Alphaproteobacteria,2P988@245186|Loktanella 28211|Alphaproteobacteria Q Flavin containing amine oxidoreductase - - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 ko:K10027 ko00906,ko01100,ko01110,map00906,map01100,map01110 - R04787,R04798,R04800,R09691,R09692 RC01214,RC02088,RC02605 ko00000,ko00001,ko01000 - - - Amino_oxidase EH3_k127_2252934_5 977880.RALTA_A2756 3.199e-98 332.0 2C57D@1|root,2Z7RS@2|Bacteria,1MX6G@1224|Proteobacteria,2W1FD@28216|Betaproteobacteria,1KHJX@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function (DUF2891) - - - - - - - - - - - - DUF2891 EH3_k127_2252934_2 1205680.CAKO01000010_gene3927 8.746e-117 389.0 COG1858@1|root,COG1858@2|Bacteria,1MV70@1224|Proteobacteria,2TRTJ@28211|Alphaproteobacteria,2JR9Q@204441|Rhodospirillales 204441|Rhodospirillales P Di-haem cytochrome c peroxidase - - 1.11.1.5 ko:K00428 - - - - ko00000,ko01000 - - - CCP_MauG,Cytochrom_C EH3_k127_2252934_4 1205680.CAKO01000010_gene3929 1.756e-98 326.0 COG3618@1|root,COG3618@2|Bacteria,1QWWJ@1224|Proteobacteria,2TV8V@28211|Alphaproteobacteria,2JVWZ@204441|Rhodospirillales 204441|Rhodospirillales S Amidohydrolase - - - - - - - - - - - - - EH3_k127_225377_2 204773.HEAR2093 3.312e-145 475.0 COG3127@1|root,COG3127@2|Bacteria,1MU9R@1224|Proteobacteria,2VHHQ@28216|Betaproteobacteria,472M0@75682|Oxalobacteraceae 28216|Betaproteobacteria Q FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD EH3_k127_225377_1 1031711.RSPO_c01334 6.608e-149 485.0 COG0402@1|root,COG0402@2|Bacteria,1MUPT@1224|Proteobacteria,2VJN1@28216|Betaproteobacteria,1JZXW@119060|Burkholderiaceae 28216|Betaproteobacteria F Guanine deaminase guaD - 3.5.4.3 ko:K01487 ko00230,ko01100,map00230,map01100 - R01676 RC00204 ko00000,ko00001,ko01000 - - - Amidohydro_1 EH3_k127_225377_0 1095769.CAHF01000021_gene918 2.686e-153 490.0 COG1744@1|root,COG1744@2|Bacteria,1MWTM@1224|Proteobacteria,2VH5W@28216|Betaproteobacteria,476JW@75682|Oxalobacteraceae 28216|Betaproteobacteria S ABC transporter substrate-binding protein PnrA-like - - - ko:K02058 - M00221 - - ko00000,ko00002,ko02000 3.A.1.2 - - Bmp EH3_k127_2254747_2 94624.Bpet1800 5.566e-195 613.0 COG0504@1|root,COG0504@2|Bacteria,1MUIT@1224|Proteobacteria,2VHVA@28216|Betaproteobacteria,3T25I@506|Alcaligenaceae 28216|Betaproteobacteria F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates pyrG GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 ko:K01937 ko00240,ko01100,map00240,map01100 M00052 R00571,R00573 RC00010,RC00074 ko00000,ko00001,ko00002,ko01000 - - - CTP_synth_N,GATase EH3_k127_2254747_3 596154.Alide2_3794 6.498e-142 473.0 COG2877@1|root,COG2877@2|Bacteria,1MV91@1224|Proteobacteria,2VIQF@28216|Betaproteobacteria,4A9V9@80864|Comamonadaceae 28216|Betaproteobacteria M 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase kdsA - 2.5.1.55 ko:K01627 ko00540,ko01100,map00540,map01100 M00063 R03254 RC00435 ko00000,ko00001,ko00002,ko01000,ko01005 - - - DAHP_synth_1 EH3_k127_2254747_6 1265502.KB905931_gene1667 1.463e-42 157.0 COG5470@1|root,COG5470@2|Bacteria,1N7JA@1224|Proteobacteria,2VU5B@28216|Betaproteobacteria,4AEZ1@80864|Comamonadaceae 28216|Betaproteobacteria S Domain of unknown function (DUF1330) - - - - - - - - - - - - DUF1330 EH3_k127_2254747_0 1265502.KB905931_gene1666 1.01e-240 748.0 COG0148@1|root,COG0148@2|Bacteria,1MU1N@1224|Proteobacteria,2VH7Y@28216|Betaproteobacteria,4A9T6@80864|Comamonadaceae 28216|Betaproteobacteria F Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis eno GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 ko:K01689 ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066 M00001,M00002,M00003,M00346,M00394 R00658 RC00349 ko00000,ko00001,ko00002,ko01000,ko03019,ko04147 - - - Enolase_C,Enolase_N EH3_k127_2254747_7 666681.M301_1085 7.735e-24 104.0 COG2919@1|root,COG2919@2|Bacteria,1N7AA@1224|Proteobacteria,2VVQJ@28216|Betaproteobacteria,2KN3C@206350|Nitrosomonadales 206350|Nitrosomonadales D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic ftsB - - ko:K05589 - - - - ko00000,ko03036 - - - DivIC EH3_k127_2254747_1 765913.ThidrDRAFT_0579 8.775e-213 704.0 COG4772@1|root,COG4772@2|Bacteria,1MUIH@1224|Proteobacteria,1RQYX@1236|Gammaproteobacteria,1X2PP@135613|Chromatiales 135613|Chromatiales P TonB-dependent Receptor Plug - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec EH3_k127_2254747_4 1218074.BAXZ01000003_gene609 6.994e-102 340.0 COG1281@1|root,COG1281@2|Bacteria,1MUMU@1224|Proteobacteria,2VI8B@28216|Betaproteobacteria,1K4UW@119060|Burkholderiaceae 28216|Betaproteobacteria O Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress hslO - - ko:K04083 - - - - ko00000,ko03110 - - - HSP33 EH3_k127_2254747_5 420662.Mpe_B0545 1.612e-97 331.0 COG0663@1|root,COG0663@2|Bacteria,1R511@1224|Proteobacteria 1224|Proteobacteria S Bacterial transferase hexapeptide (six repeats) - - - - - - - - - - - - Hexapep EH3_k127_2254747_8 420662.Mpe_B0544 7.452e-18 84.0 COG0028@1|root,COG0028@2|Bacteria,1MXDW@1224|Proteobacteria,2W96R@28216|Betaproteobacteria,1KNUE@119065|unclassified Burkholderiales 28216|Betaproteobacteria EH Thiamine pyrophosphate enzyme, central domain - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_M,TPP_enzyme_N EH3_k127_2274228_3 296591.Bpro_4156 1.183e-73 261.0 COG0111@1|root,COG0111@2|Bacteria,1MW1U@1224|Proteobacteria,2VIH8@28216|Betaproteobacteria,4AA4A@80864|Comamonadaceae 28216|Betaproteobacteria EH PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding ghrA - 1.1.1.79,1.1.1.81 ko:K12972 ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00260,map00620,map00630,map01100,map01110,map01120 - R00465,R01388,R01392,R02527 RC00031,RC00042,RC00670 ko00000,ko00001,ko01000 - - - 2-Hacid_dh_C EH3_k127_2274228_6 1247726.MIM_c22540 1.993e-59 216.0 COG0500@1|root,COG2226@2|Bacteria,1RGJA@1224|Proteobacteria,2VTNT@28216|Betaproteobacteria 28216|Betaproteobacteria Q Methyltransferase domain - - 2.1.1.163,2.1.1.201 ko:K03183 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116,M00117 R04990,R04993,R06859,R08774,R09736 RC00003,RC01253,RC01662 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_25 EH3_k127_2274228_1 1163617.SCD_n01513 1.133e-117 388.0 COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2VH5N@28216|Betaproteobacteria 28216|Betaproteobacteria Q ABC-type transport system involved in resistance to organic solvents, permease component - - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE,STAS_2 EH3_k127_2274228_2 1163617.SCD_n01514 2.761e-107 372.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2VJK6@28216|Betaproteobacteria 28216|Betaproteobacteria Q Abc transporter - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran EH3_k127_2274228_5 614083.AWQR01000025_gene3665 1.634e-61 227.0 COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,2VJHA@28216|Betaproteobacteria,4AAHD@80864|Comamonadaceae 28216|Betaproteobacteria Q PFAM Mammalian cell entry related domain protein - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD EH3_k127_2274228_7 1163617.SCD_n01516 1.984e-37 149.0 COG3218@1|root,COG3218@2|Bacteria,1NCG2@1224|Proteobacteria,2VWSK@28216|Betaproteobacteria 28216|Betaproteobacteria S ABC-type transport auxiliary lipoprotein component - - - ko:K18480 - M00669 - - ko00000,ko00002,ko02000 3.A.1.27.1 - - ABC_trans_aux EH3_k127_2274228_8 1187851.A33M_0456 1.175e-30 132.0 COG2329@1|root,COG2329@2|Bacteria,1NDM8@1224|Proteobacteria,2UG48@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Antibiotic biosynthesis monooxygenase - - - - - - - - - - - - ydhR EH3_k127_2274228_0 1502852.FG94_01696 1.48e-263 829.0 COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2VH59@28216|Betaproteobacteria,472UQ@75682|Oxalobacteraceae 28216|Betaproteobacteria I Acetyl propionyl-CoA carboxylase, alpha subunit accA1 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.4.1.4 ko:K01968 ko00280,ko01100,map00280,map01100 M00036 R04138 RC00367,RC00942 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2 EH3_k127_2274228_4 296591.Bpro_4158 6.878e-62 219.0 28JRZ@1|root,2Z9HI@2|Bacteria,1R52Z@1224|Proteobacteria,2VRVF@28216|Betaproteobacteria,4AE77@80864|Comamonadaceae 28216|Betaproteobacteria S Domain of unknown function (DUF4126) - - - - - - - - - - - - DUF4126 EH3_k127_2274228_9 264198.Reut_A1464 2.709e-24 104.0 COG1024@1|root,COG1024@2|Bacteria,1MVEC@1224|Proteobacteria,2VI5G@28216|Betaproteobacteria,1K3TY@119060|Burkholderiaceae 28216|Betaproteobacteria I enoyl-CoA hydratase - - 4.2.1.18 ko:K13766,ko:K15312 ko00280,ko01100,map00280,map01100 M00036 R02085 RC02416 ko00000,ko00001,ko00002,ko01000,ko01008 - - - ECH_1 EH3_k127_2274489_4 640081.Dsui_2901 7.23e-12 76.0 COG0157@1|root,COG0157@2|Bacteria,1MW0C@1224|Proteobacteria,2VHSU@28216|Betaproteobacteria,2KVHJ@206389|Rhodocyclales 206389|Rhodocyclales H Belongs to the NadC ModD family nadC - 2.4.2.19 ko:K00767 ko00760,ko01100,map00760,map01100 M00115 R03348 RC02877 ko00000,ko00001,ko00002,ko01000 - - - QRPTase_C,QRPTase_N EH3_k127_2274489_2 1454004.AW11_01594 9.931e-90 307.0 COG5473@1|root,COG5473@2|Bacteria,1MVRU@1224|Proteobacteria,2VK3K@28216|Betaproteobacteria,1KQTC@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria S Predicted integral membrane protein (DUF2189) - - - - - - - - - - - - DUF2189 EH3_k127_2274489_0 614083.AWQR01000041_gene814 8.223e-163 516.0 COG2404@1|root,COG2404@2|Bacteria,1QW0R@1224|Proteobacteria,2VJE0@28216|Betaproteobacteria,4AC8Q@80864|Comamonadaceae 28216|Betaproteobacteria S COG0618 Exopolyphosphatase-related proteins - - - - - - - - - - - - - EH3_k127_2274489_1 76114.ebA4959 1.265e-91 317.0 COG0697@1|root,COG0697@2|Bacteria,1MXVF@1224|Proteobacteria,2VKMQ@28216|Betaproteobacteria,2KVQX@206389|Rhodocyclales 206389|Rhodocyclales EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_2274489_3 1123367.C666_08035 2.646e-52 189.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,2VJZD@28216|Betaproteobacteria,2KU9G@206389|Rhodocyclales 206389|Rhodocyclales H Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration nnrD - - - - - - - - - - - Carb_kinase,YjeF_N EH3_k127_2277761_4 1097668.BYI23_A006610 5.076e-36 139.0 COG0127@1|root,COG0127@2|Bacteria,1MUK5@1224|Proteobacteria,2VQ1Z@28216|Betaproteobacteria,1K2WW@119060|Burkholderiaceae 28216|Betaproteobacteria F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions rdgB - 3.6.1.66 ko:K02428 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000 - - - Ham1p_like EH3_k127_2277761_1 1038869.AXAN01000007_gene5788 1.208e-170 550.0 COG0635@1|root,COG0635@2|Bacteria,1MU76@1224|Proteobacteria,2VHBB@28216|Betaproteobacteria,1K01J@119060|Burkholderiaceae 28216|Betaproteobacteria H Involved in the biosynthesis of porphyrin-containing compound hemN2 - - - - - - - - - - - HemN_C,Radical_SAM EH3_k127_2277761_0 257310.BB2954 2.238e-266 825.0 COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2VHYE@28216|Betaproteobacteria,3T1WU@506|Alcaligenaceae 28216|Betaproteobacteria E highly regulated protein controlled by the addition removal of adenylyl groups by adenylyltransferase from specific tyrosine residues glnA GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 ko:K01915,ko:K20712 ko00220,ko00250,ko00627,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00627,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253,R06988,R09284 RC00010,RC01754,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C,Gln-synt_N EH3_k127_2277761_5 1217718.ALOU01000019_gene2711 1.643e-29 124.0 2BWQ4@1|root,32QZV@2|Bacteria,1MZQ9@1224|Proteobacteria,2VSNR@28216|Betaproteobacteria,1K6PH@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - DUF4124 EH3_k127_2277761_3 1500894.JQNN01000001_gene4578 1.155e-113 377.0 COG3852@1|root,COG3852@2|Bacteria,1MVN6@1224|Proteobacteria,2VJN7@28216|Betaproteobacteria,47352@75682|Oxalobacteraceae 28216|Betaproteobacteria T Signal transduction histidine kinase, nitrogen specific ntrB - 2.7.13.3 ko:K07708 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA,PAS,PAS_4,PAS_9 EH3_k127_2277761_2 757424.Hsero_3125 2.961e-142 462.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2VHSB@28216|Betaproteobacteria,4733N@75682|Oxalobacteraceae 28216|Betaproteobacteria T Sigma-54 interaction domain ntrC GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - ko:K07712 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat EH3_k127_2293254_1 1095769.CAHF01000007_gene1653 6.882e-95 314.0 COG0075@1|root,COG0075@2|Bacteria,1MWHJ@1224|Proteobacteria,2VI9Q@28216|Betaproteobacteria,472G7@75682|Oxalobacteraceae 28216|Betaproteobacteria E Aminotransferase class-V sgaA - 2.6.1.44,2.6.1.45,2.6.1.51 ko:K00830 ko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146 M00346,M00532 R00369,R00372,R00585,R00588 RC00006,RC00008,RC00018 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_5 EH3_k127_2293254_2 365046.Rta_16250 1.162e-75 266.0 COG1802@1|root,COG1802@2|Bacteria,1N7GE@1224|Proteobacteria,2VNZS@28216|Betaproteobacteria,4ABT8@80864|Comamonadaceae 28216|Betaproteobacteria K Regulatory protein GntR HTH - - - - - - - - - - - - FCD,GntR EH3_k127_2293254_0 94624.Bpet4348 0.0 1335.0 COG0247@1|root,COG0277@1|root,COG0247@2|Bacteria,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2VHCG@28216|Betaproteobacteria,3T6RJ@506|Alcaligenaceae 28216|Betaproteobacteria C 4Fe-4S dicluster domain - - - - - - - - - - - - CCG,FAD-oxidase_C,FAD_binding_4,Fer4_8 EH3_k127_2293254_4 335543.Sfum_0590 6.14e-20 96.0 2BQW2@1|root,32JT0@2|Bacteria,1QNFB@1224|Proteobacteria,432XH@68525|delta/epsilon subdivisions,2WYDA@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - EH3_k127_2293254_5 583355.Caka_0264 1.942e-19 96.0 COG2905@1|root,COG2905@2|Bacteria,46T3B@74201|Verrucomicrobia 74201|Verrucomicrobia T PFAM CBS domain containing protein - - - - - - - - - - - - CBS EH3_k127_2293254_3 742823.HMPREF9465_02314 3.346e-64 222.0 COG0152@1|root,COG0152@2|Bacteria,1MUR9@1224|Proteobacteria,2VGZK@28216|Betaproteobacteria,4PQ2Z@995019|Sutterellaceae 28216|Betaproteobacteria F SAICAR synthetase purC GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 ko:K01923 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04591 RC00064,RC00162 ko00000,ko00001,ko00002,ko01000 - - - SAICAR_synt EH3_k127_2313251_0 1097668.BYI23_A000170 0.0 1113.0 COG0550@1|root,COG0550@2|Bacteria,1MUFZ@1224|Proteobacteria,2VHUF@28216|Betaproteobacteria,1K0Y7@119060|Burkholderiaceae 28216|Betaproteobacteria L dna topoisomerase III topB - 5.99.1.2 ko:K03169 - - - - ko00000,ko01000,ko03032 - - - SWIB,Topoisom_bac,Toprim,Toprim_Crpt EH3_k127_2313251_3 261292.Nit79A3_2068 3.424e-24 103.0 COG3071@1|root,COG3071@2|Bacteria,1N6Y8@1224|Proteobacteria,2VW5A@28216|Betaproteobacteria,373PD@32003|Nitrosomonadales 28216|Betaproteobacteria H Protein of unknown function (DUF2905) - - - - - - - - - - - - DUF2905 EH3_k127_2313251_2 1121127.JAFA01000005_gene4854 5.825e-74 259.0 COG3836@1|root,COG3836@2|Bacteria,1MUSG@1224|Proteobacteria,2VN7W@28216|Betaproteobacteria,1K27W@119060|Burkholderiaceae 28216|Betaproteobacteria G Belongs to the HpcH HpaI aldolase family garL - 4.1.2.20 ko:K01630 ko00053,map00053 - R02754,R03277 RC00307,RC00435 ko00000,ko00001,ko01000 - - - HpcH_HpaI EH3_k127_2313251_1 234267.Acid_0041 4.858e-129 434.0 COG4122@1|root,COG4122@2|Bacteria,3Y33U@57723|Acidobacteria 57723|Acidobacteria S O-methyltransferase activity - - - - - - - - - - - - - EH3_k127_2315094_0 887062.HGR_03057 3.279e-186 587.0 COG0154@1|root,COG0154@2|Bacteria,1MU51@1224|Proteobacteria,2VIXK@28216|Betaproteobacteria,4ACRB@80864|Comamonadaceae 28216|Betaproteobacteria J Belongs to the amidase family - - 3.5.1.4,6.3.5.6,6.3.5.7 ko:K01426,ko:K02433 ko00330,ko00360,ko00380,ko00627,ko00643,ko00970,ko01100,ko01120,map00330,map00360,map00380,map00627,map00643,map00970,map01100,map01120 - R02540,R03096,R03180,R03905,R03909,R04212,R05551,R05590 RC00010,RC00100,RC00950,RC01025 ko00000,ko00001,ko01000,ko03029 - - - Amidase EH3_k127_2315094_1 1157708.KB907453_gene4189 5.645e-185 587.0 COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2VHQ8@28216|Betaproteobacteria,4AAK9@80864|Comamonadaceae 28216|Betaproteobacteria E TIGRFAM amidase, hydantoinase carbamoylase family - - 3.5.1.6,3.5.1.87 ko:K06016 ko00240,ko01100,map00240,map01100 M00046 R00905,R04666 RC00096 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20,Peptidase_M28 EH3_k127_2315094_3 365046.Rta_37440 2.1e-41 157.0 COG2137@1|root,COG2137@2|Bacteria,1N6P6@1224|Proteobacteria,2VTYZ@28216|Betaproteobacteria,4AEE9@80864|Comamonadaceae 28216|Betaproteobacteria S Modulates RecA activity recX - - ko:K03565 - - - - ko00000,ko03400 - - - RecX EH3_k127_2315094_2 257313.BP2546 9.314e-182 574.0 COG0468@1|root,COG0468@2|Bacteria,1MU3C@1224|Proteobacteria,2VHNA@28216|Betaproteobacteria,3T255@506|Alcaligenaceae 28216|Betaproteobacteria L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage recA - - ko:K03553 ko03440,map03440 M00729 - - ko00000,ko00001,ko00002,ko03400 - - - RecA EH3_k127_2315094_4 123899.JPQP01000004_gene469 8.035e-14 75.0 COG0745@1|root,COG0745@2|Bacteria,1MY5Y@1224|Proteobacteria,2VI0W@28216|Betaproteobacteria,3T2ZT@506|Alcaligenaceae 28216|Betaproteobacteria K Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain basR_3 - - ko:K02483,ko:K07666,ko:K07774 ko02020,ko02024,map02020,map02024 M00453,M00457 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C EH3_k127_2321110_0 1095769.CAHF01000005_gene1441 1.147e-137 450.0 COG0037@1|root,COG0037@2|Bacteria,1MW5Q@1224|Proteobacteria,2VHWH@28216|Betaproteobacteria,473FX@75682|Oxalobacteraceae 28216|Betaproteobacteria J Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system ttcA - - ko:K14058 - - - - ko00000,ko03016 - - - ATP_bind_3 EH3_k127_2321110_2 420662.Mpe_A0553 3.239e-45 174.0 COG1539@1|root,COG1539@2|Bacteria,1MY5Q@1224|Proteobacteria,2VRBR@28216|Betaproteobacteria,1KM7C@119065|unclassified Burkholderiales 28216|Betaproteobacteria H dihydroneopterin aldolase folB - 1.13.11.81,4.1.2.25,5.1.99.8 ko:K01633 ko00790,ko01100,map00790,map01100 M00126,M00840 R03504,R11037,R11073 RC00721,RC00943,RC01479,RC03333,RC03334 ko00000,ko00001,ko00002,ko01000 - - - FolB EH3_k127_2321110_1 1502852.FG94_01527 1.477e-95 323.0 COG1028@1|root,COG1028@2|Bacteria,1MUUV@1224|Proteobacteria,2VK0U@28216|Betaproteobacteria,473CM@75682|Oxalobacteraceae 28216|Betaproteobacteria IQ KR domain - - - - - - - - - - - - adh_short_C2 EH3_k127_2321110_3 1218076.BAYB01000023_gene4152 7.771e-16 89.0 COG1565@1|root,COG1565@2|Bacteria,1N3CJ@1224|Proteobacteria,2VHBE@28216|Betaproteobacteria,1K3UE@119060|Burkholderiaceae 28216|Betaproteobacteria S Putative S-adenosyl-L-methionine-dependent methyltransferase - - - - - - - - - - - - Methyltransf_28 EH3_k127_2333076_1 526227.Mesil_0322 3.146e-32 139.0 COG1850@1|root,COG1850@2|Bacteria,1WJED@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus G Ribulose bisphosphate carboxylase large chain, catalytic domain - - 4.1.1.39 ko:K01601 ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200 M00165,M00166,M00532 R00024,R03140 RC00172,RC00859 ko00000,ko00001,ko00002,ko01000 - - - RuBisCO_large EH3_k127_2333076_0 522306.CAP2UW1_4064 4.766e-99 339.0 COG0668@1|root,COG0668@2|Bacteria,1N66N@1224|Proteobacteria,2WGKB@28216|Betaproteobacteria 28216|Betaproteobacteria M Mechanosensitive ion channel - - - - - - - - - - - - MS_channel EH3_k127_2343539_0 748247.AZKH_0650 0.0 1024.0 COG1643@1|root,COG1643@2|Bacteria,1MUEQ@1224|Proteobacteria,2VI3R@28216|Betaproteobacteria,2KUB1@206389|Rhodocyclales 206389|Rhodocyclales L Helicase associated domain (HA2) Add an annotation hrpA - 3.6.4.13 ko:K03578 - - - - ko00000,ko01000 - - - DEAD,DUF3418,HA2,Helicase_C,OB_NTP_bind EH3_k127_2349000_4 1158292.JPOE01000005_gene1152 1.482e-44 162.0 COG1225@1|root,COG1225@2|Bacteria,1R9YF@1224|Proteobacteria,2VN9B@28216|Betaproteobacteria 28216|Betaproteobacteria O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - AhpC-TSA EH3_k127_2349000_2 159087.Daro_3127 8.902e-52 190.0 COG0607@1|root,COG0607@2|Bacteria,1RDYR@1224|Proteobacteria,2VRSF@28216|Betaproteobacteria,2KXAZ@206389|Rhodocyclales 206389|Rhodocyclales P Rhodanese Homology Domain - - - - - - - - - - - - Rhodanese EH3_k127_2349000_1 1454004.AW11_02076 3.263e-72 250.0 COG0637@1|root,COG0637@2|Bacteria,1PUMZ@1224|Proteobacteria,2VHJ3@28216|Betaproteobacteria 28216|Betaproteobacteria G TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 cbbY - - - - - - - - - - - HAD_2 EH3_k127_2349000_3 296591.Bpro_4881 1.011e-44 168.0 COG3090@1|root,COG3090@2|Bacteria,1RAZ5@1224|Proteobacteria,2VQ8J@28216|Betaproteobacteria,4ADJZ@80864|Comamonadaceae 28216|Betaproteobacteria G Tripartite ATP-independent periplasmic transporter, DctQ - - - - - - - - - - - - DctQ EH3_k127_2349000_0 296591.Bpro_4880 1.938e-168 541.0 COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2VHJP@28216|Betaproteobacteria,4ACPD@80864|Comamonadaceae 28216|Betaproteobacteria G Trap dicarboxylate transporter, dctm subunit - - - - - - - - - - - - DctM EH3_k127_2351649_6 381666.H16_A2370 5.227e-130 424.0 COG2265@1|root,COG2265@2|Bacteria,1MV3A@1224|Proteobacteria,2VHJ8@28216|Betaproteobacteria,1K251@119060|Burkholderiaceae 28216|Betaproteobacteria J Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA rlmD - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr EH3_k127_2351649_16 1203554.HMPREF1476_01911 3.708e-17 81.0 COG2265@1|root,COG2265@2|Bacteria,1MV3A@1224|Proteobacteria,2VHJ8@28216|Betaproteobacteria,4PQ9A@995019|Sutterellaceae 28216|Betaproteobacteria H Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA rlmD - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr EH3_k127_2351649_10 1265502.KB905935_gene3068 2.591e-75 256.0 COG0105@1|root,COG0105@2|Bacteria,1R9ZA@1224|Proteobacteria,2VQ2J@28216|Betaproteobacteria,4ADHY@80864|Comamonadaceae 28216|Betaproteobacteria F Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate ndk - 2.7.4.6 ko:K00940 ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016 M00049,M00050,M00052,M00053 R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895 RC00002 ko00000,ko00001,ko00002,ko01000,ko04131 - - - NDK EH3_k127_2351649_3 469610.HMPREF0189_01132 4.615e-171 553.0 COG0820@1|root,COG0820@2|Bacteria,1MUYK@1224|Proteobacteria,2VIBN@28216|Betaproteobacteria,1KJGB@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs rlmN - 2.1.1.192 ko:K06941 - - - - ko00000,ko01000,ko03009 - - - Radical_SAM EH3_k127_2351649_12 1095769.CAHF01000011_gene2400 6.358e-55 209.0 COG3063@1|root,COG3063@2|Bacteria,1MXPC@1224|Proteobacteria,2VNC8@28216|Betaproteobacteria,4735P@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Tetratricopeptide repeat pilF - - ko:K02656 - - - - ko00000,ko02035,ko02044 - - - TPR_16,TPR_17,TPR_19,TPR_2,TPR_8 EH3_k127_2351649_15 305700.B447_18763 6.616e-28 128.0 COG1426@1|root,COG1426@2|Bacteria,1N240@1224|Proteobacteria,2VVFV@28216|Betaproteobacteria,2KWMY@206389|Rhodocyclales 206389|Rhodocyclales S Domain of unknown function (DUF4115) - - - ko:K15539 - - - - ko00000 - - - DUF4115,HTH_25 EH3_k127_2351649_0 1532557.JL37_01380 3.179e-209 658.0 COG0821@1|root,COG0821@2|Bacteria,1MUAX@1224|Proteobacteria,2VID7@28216|Betaproteobacteria,3T1KN@506|Alcaligenaceae 28216|Betaproteobacteria I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate ispG - 1.17.7.1,1.17.7.3 ko:K03526 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R08689,R10859 RC01486 ko00000,ko00001,ko00002,ko01000 - - - GcpE EH3_k127_2351649_2 1095769.CAHF01000011_gene2397 8.597e-172 565.0 COG0124@1|root,COG0124@2|Bacteria,1MV2K@1224|Proteobacteria,2VIGA@28216|Betaproteobacteria,472I2@75682|Oxalobacteraceae 28216|Betaproteobacteria J Histidyl-tRNA synthetase hisS - 6.1.1.21 ko:K01892 ko00970,map00970 M00359,M00360 R03655 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_His EH3_k127_2351649_11 1095769.CAHF01000011_gene2396 8.132e-63 222.0 COG2976@1|root,COG2976@2|Bacteria,1N117@1224|Proteobacteria,2VSHE@28216|Betaproteobacteria,472YF@75682|Oxalobacteraceae 28216|Betaproteobacteria S Tetratricopeptide repeat-like domain - - - - - - - - - - - - TPR_21 EH3_k127_2351649_9 1095769.CAHF01000011_gene2395 3.197e-102 347.0 COG1520@1|root,COG1520@2|Bacteria,1MXIJ@1224|Proteobacteria,2VHH5@28216|Betaproteobacteria,4732M@75682|Oxalobacteraceae 28216|Betaproteobacteria M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamB - - ko:K17713 - - - - ko00000,ko02000 1.B.33.1 - - PQQ_2,PQQ_3 EH3_k127_2351649_1 469610.HMPREF0189_01138 1.939e-188 598.0 COG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,2VI8D@28216|Betaproteobacteria,1KJJ0@119065|unclassified Burkholderiales 28216|Betaproteobacteria S GTPase that plays an essential role in the late steps of ribosome biogenesis der - - ko:K03977 - - - - ko00000,ko03009 - - - KH_dom-like,MMR_HSR1 EH3_k127_2351649_14 204773.HEAR1269 1.258e-38 145.0 COG1923@1|root,COG1923@2|Bacteria,1MZM1@1224|Proteobacteria,2VTXK@28216|Betaproteobacteria,474UU@75682|Oxalobacteraceae 28216|Betaproteobacteria J RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs hfq - - ko:K03666 ko02024,ko03018,ko05111,map02024,map03018,map05111 - - - ko00000,ko00001,ko03019,ko03036 - - - Hfq EH3_k127_2351649_5 742823.HMPREF9465_00343 2.434e-133 440.0 COG2262@1|root,COG2262@2|Bacteria,1MUA0@1224|Proteobacteria,2VI86@28216|Betaproteobacteria,4PQSA@995019|Sutterellaceae 28216|Betaproteobacteria S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis hflX - - ko:K03665 - - - - ko00000,ko03009 - - - GTP-bdg_M,GTP-bdg_N,MMR_HSR1 EH3_k127_2351649_4 1144342.PMI40_03683 2.409e-141 460.0 COG0330@1|root,COG0330@2|Bacteria,1MUM2@1224|Proteobacteria,2VIG2@28216|Betaproteobacteria,472HK@75682|Oxalobacteraceae 28216|Betaproteobacteria O HflC and HflK could encode or regulate a protease hflK - - ko:K04088 - M00742 - - ko00000,ko00002,ko01000 - - - Band_7,HflK_N EH3_k127_2351649_8 1159870.KB907784_gene2598 4.086e-108 357.0 COG0330@1|root,COG0330@2|Bacteria,1MV7R@1224|Proteobacteria,2VI9W@28216|Betaproteobacteria,3T2ZZ@506|Alcaligenaceae 28216|Betaproteobacteria O HflC and HflK could regulate a protease hflC - - ko:K04087 - M00742 - - ko00000,ko00002,ko01000 - - - Band_7 EH3_k127_2351649_17 1304883.KI912532_gene1974 3.406e-13 78.0 COG3242@1|root,COG3242@2|Bacteria,1NG9Q@1224|Proteobacteria,2VXNJ@28216|Betaproteobacteria,2KX7Z@206389|Rhodocyclales 206389|Rhodocyclales S protein conserved in bacteria - - - ko:K09937 - - - - ko00000 - - - DUF2065 EH3_k127_2351649_7 1144342.PMI40_03685 1.099e-119 396.0 COG3705@1|root,COG3705@2|Bacteria,1MWIG@1224|Proteobacteria,2VHVX@28216|Betaproteobacteria,47295@75682|Oxalobacteraceae 28216|Betaproteobacteria E Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine hisZ - - ko:K02502 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002 - - - tRNA-synt_His EH3_k127_2351649_13 1437824.BN940_08411 3.334e-53 190.0 COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,2VHBR@28216|Betaproteobacteria,3T38Z@506|Alcaligenaceae 28216|Betaproteobacteria F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA - 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt EH3_k127_235255_4 29581.BW37_01196 1.141e-73 251.0 COG3496@1|root,COG3496@2|Bacteria,1RC56@1224|Proteobacteria,2VIZ9@28216|Betaproteobacteria,475QY@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF1365) - - - ko:K09701 - - - - ko00000 - - - DUF1365 EH3_k127_235255_1 795666.MW7_0614 1.365e-148 485.0 COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,2VJ00@28216|Betaproteobacteria,1K0B2@119060|Burkholderiaceae 28216|Betaproteobacteria M cyclopropane-fatty-acyl-phospholipid synthase cfa GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008168,GO:0008610,GO:0008757,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0030312,GO:0032259,GO:0032787,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:1901576 2.1.1.79 ko:K00574 - - - - ko00000,ko01000 - - - CMAS EH3_k127_235255_7 204773.HEAR2424 2.812e-39 155.0 COG3572@1|root,COG3572@2|Bacteria,1N0R0@1224|Proteobacteria,2VUCP@28216|Betaproteobacteria,477A8@75682|Oxalobacteraceae 28216|Betaproteobacteria H Chalcone isomerase-like - - - - - - - - - - - - Chalcone_3 EH3_k127_235255_2 204773.HEAR2425 4.523e-92 318.0 COG2211@1|root,COG2211@2|Bacteria,1MVUM@1224|Proteobacteria,2VI47@28216|Betaproteobacteria,475BN@75682|Oxalobacteraceae 28216|Betaproteobacteria U MFS/sugar transport protein - - - - - - - - - - - - MFS_2 EH3_k127_235255_5 62928.azo3314 1.61e-58 209.0 2ANPA@1|root,31DNS@2|Bacteria,1RHTE@1224|Proteobacteria,2VRS4@28216|Betaproteobacteria,2KWF5@206389|Rhodocyclales 206389|Rhodocyclales S Protein of unknown function (DUF3833) - - - - - - - - - - - - DUF3833 EH3_k127_235255_3 204773.HEAR2427 7.198e-83 284.0 COG0300@1|root,COG0300@2|Bacteria,1R735@1224|Proteobacteria,2VH63@28216|Betaproteobacteria,475QX@75682|Oxalobacteraceae 28216|Betaproteobacteria S Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short EH3_k127_235255_6 395495.Lcho_0469 2.501e-47 184.0 COG3631@1|root,COG3631@2|Bacteria,1MZS5@1224|Proteobacteria,2VSD2@28216|Betaproteobacteria,1KM0Z@119065|unclassified Burkholderiales 28216|Betaproteobacteria S SnoaL-like domain - - 5.3.3.1 ko:K01822 ko00140,ko00984,ko01100,ko01120,map00140,map00984,map01100,map01120 M00107,M00110 R01837,R02216,R02499,R02840,R03327,R04163,R04678,R04849,R09955 RC00146,RC00762 ko00000,ko00001,ko00002,ko01000 - - - SnoaL_2 EH3_k127_235255_0 264198.Reut_A0107 1.549e-159 505.0 COG1633@1|root,COG1633@2|Bacteria,1MXX8@1224|Proteobacteria,2VI3H@28216|Betaproteobacteria,1K0A1@119060|Burkholderiaceae 28216|Betaproteobacteria S Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - - - - - - - - - - - EH3_k127_2352822_0 1472716.KBK24_0102685 3.486e-257 812.0 COG2721@1|root,COG2721@2|Bacteria,1MU9V@1224|Proteobacteria,2VHJB@28216|Betaproteobacteria,1K0EB@119060|Burkholderiaceae 28216|Betaproteobacteria G PFAM D-galactarate dehydratase Altronate hydrolase domain protein uxaA - 4.2.1.7,4.4.1.24 ko:K01685,ko:K16846 ko00040,ko00270,ko01100,map00040,map00270,map01100 M00631 R01540,R07633 RC00543,RC01785 ko00000,ko00001,ko00002,ko01000 - - - GD_AH_C,SAF EH3_k127_2352822_1 762376.AXYL_02288 8.477e-116 382.0 COG1250@1|root,COG1250@2|Bacteria,1MV8M@1224|Proteobacteria,2VI1C@28216|Betaproteobacteria,3T1KH@506|Alcaligenaceae 28216|Betaproteobacteria C 3-hydroxyacyl-CoA dehydrogenase - - 1.1.1.157 ko:K00074 ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120 - R01976,R05576,R06941 RC00029,RC00117 ko00000,ko00001,ko01000 - - - 3HCDH,3HCDH_N EH3_k127_2352822_2 1439940.BAY1663_02875 6.652e-81 273.0 COG0129@1|root,COG0129@2|Bacteria,1MV4I@1224|Proteobacteria,1RRRD@1236|Gammaproteobacteria 1236|Gammaproteobacteria EG Belongs to the IlvD Edd family - - 4.2.1.9 ko:K01687 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R01209,R04441,R05070 RC00468,RC01714 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD EH3_k127_2359797_5 1003200.AXXA_18612 1.894e-58 204.0 COG0360@1|root,COG0360@2|Bacteria,1RH82@1224|Proteobacteria,2VR79@28216|Betaproteobacteria,3T3SU@506|Alcaligenaceae 28216|Betaproteobacteria J Binds together with S18 to 16S ribosomal RNA rpsF - - ko:K02990 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S6 EH3_k127_2359797_2 266117.Rxyl_1341 3.956e-79 279.0 COG0846@1|root,COG0846@2|Bacteria,2GJI3@201174|Actinobacteria,4CU5Y@84995|Rubrobacteria 84995|Rubrobacteria K NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form - - - ko:K12410 - - - - ko00000,ko01000 - - - SIR2 EH3_k127_2359797_3 1095769.CAHF01000011_gene2386 5.92e-77 270.0 COG0566@1|root,COG0566@2|Bacteria,1MWCM@1224|Proteobacteria,2VHF4@28216|Betaproteobacteria,472IM@75682|Oxalobacteraceae 28216|Betaproteobacteria J Specifically methylates the ribose of guanosine 2251 in 23S rRNA rlmB - 2.1.1.185 ko:K03218 - - - - ko00000,ko01000,ko03009 - - - SpoU_methylase,SpoU_sub_bind EH3_k127_2359797_0 94624.Bpet2707 3.065e-290 912.0 COG0557@1|root,COG0557@2|Bacteria,1MUS6@1224|Proteobacteria,2VHBJ@28216|Betaproteobacteria,3T1JK@506|Alcaligenaceae 28216|Betaproteobacteria J 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs rnr - - ko:K12573 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03016,ko03019 - - - OB_RNB,RNB,S1 EH3_k127_2359797_4 266265.Bxe_A1607 2.745e-76 260.0 COG2236@1|root,COG2236@2|Bacteria,1R675@1224|Proteobacteria,2VPZG@28216|Betaproteobacteria,1K0GF@119060|Burkholderiaceae 28216|Betaproteobacteria F phosphoribosyltransferase gpt - - ko:K07101 - - - - ko00000 - - - Pribosyltran EH3_k127_2359797_1 1120999.JONM01000001_gene1327 8.962e-80 269.0 COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,2VHBR@28216|Betaproteobacteria,2KPT5@206351|Neisseriales 206351|Neisseriales F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA - 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt EH3_k127_2373738_2 1175306.GWL_28700 1.553e-93 311.0 COG1643@1|root,COG1643@2|Bacteria,1MUEQ@1224|Proteobacteria,2VI3R@28216|Betaproteobacteria,472Q0@75682|Oxalobacteraceae 28216|Betaproteobacteria L Helicase associated domain (HA2) Add an annotation hrpA - 3.6.4.13 ko:K03578 - - - - ko00000,ko01000 - - - DEAD,DUF3418,HA2,Helicase_C,OB_NTP_bind EH3_k127_2373738_1 1005048.CFU_2555 2.394e-110 368.0 COG1028@1|root,COG1028@2|Bacteria,1MW9A@1224|Proteobacteria,2VK1C@28216|Betaproteobacteria,473S5@75682|Oxalobacteraceae 28216|Betaproteobacteria IQ dehydrogenase ygfF - - - - - - - - - - - adh_short_C2 EH3_k127_2373738_0 864073.HFRIS_015736 1.547e-186 593.0 COG0548@1|root,COG1246@1|root,COG0548@2|Bacteria,COG1246@2|Bacteria,1MUUP@1224|Proteobacteria,2VGZC@28216|Betaproteobacteria,472YS@75682|Oxalobacteraceae 28216|Betaproteobacteria E Belongs to the acetyltransferase family. ArgA subfamily argA - 2.3.1.1 ko:K14682 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R00259 RC00004,RC00064 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,Acetyltransf_1 EH3_k127_2373738_3 887062.HGR_04583 6.321e-45 164.0 COG2924@1|root,COG2924@2|Bacteria,1MZ2V@1224|Proteobacteria,2VTYU@28216|Betaproteobacteria,4AEC5@80864|Comamonadaceae 28216|Betaproteobacteria CO Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes yggX - - - - - - - - - - - Iron_traffic EH3_k127_2397682_0 1198452.Jab_1c12350 1.296e-110 367.0 COG2334@1|root,COG2334@2|Bacteria,1MUKJ@1224|Proteobacteria,2VH2I@28216|Betaproteobacteria,47311@75682|Oxalobacteraceae 28216|Betaproteobacteria F Belongs to the pseudomonas-type ThrB family thrB - 2.7.1.39 ko:K02204 ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230 M00018 R01771 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - APH EH3_k127_2397682_2 1192124.LIG30_0566 1.887e-32 136.0 COG5473@1|root,COG5473@2|Bacteria,1N9UJ@1224|Proteobacteria,2VNM5@28216|Betaproteobacteria,1K2PD@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_2397682_1 748247.AZKH_1276 6.98e-35 136.0 COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,2VH4I@28216|Betaproteobacteria,2KV7T@206389|Rhodocyclales 206389|Rhodocyclales L DNA helicase uvrD - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C EH3_k127_240317_2 1000565.METUNv1_00824 1.126e-10 72.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2VJK6@28216|Betaproteobacteria,2KVH1@206389|Rhodocyclales 206389|Rhodocyclales Q ABC-type transport system involved in resistance to organic solvents, ATPase component - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran EH3_k127_240317_0 305700.B447_05513 1.085e-127 421.0 COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2VH5N@28216|Betaproteobacteria,2KUN0@206389|Rhodocyclales 206389|Rhodocyclales Q Permease MlaE - - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE EH3_k127_240317_1 1000565.METUNv1_00822 9.176e-76 259.0 COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2VI1K@28216|Betaproteobacteria,2KUQ9@206389|Rhodocyclales 206389|Rhodocyclales FP Exopolyphosphatase ppx - 3.6.1.11,3.6.1.40 ko:K01524 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000 - - - Ppx-GppA EH3_k127_2439893_2 1392838.AWNM01000051_gene3016 5.904e-119 391.0 COG1565@1|root,COG1565@2|Bacteria,1N3CJ@1224|Proteobacteria,2VHBE@28216|Betaproteobacteria,3T1WP@506|Alcaligenaceae 28216|Betaproteobacteria S Putative S-adenosyl-L-methionine-dependent methyltransferase - - - - - - - - - - - - Methyltransf_28 EH3_k127_2439893_10 1071679.BG57_25435 9.651e-20 89.0 2EITT@1|root,33CJ3@2|Bacteria,1NH36@1224|Proteobacteria,2VXT6@28216|Betaproteobacteria,1KA48@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function (DUF2905) - - - - - - - - - - - - DUF2905 EH3_k127_2439893_0 1265502.KB905960_gene300 6.207e-176 561.0 COG0617@1|root,COG0617@2|Bacteria,1MU2X@1224|Proteobacteria,2VIN5@28216|Betaproteobacteria,4AAWR@80864|Comamonadaceae 28216|Betaproteobacteria J Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases cca - 2.7.7.72 ko:K00974 ko03013,map03013 - R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016 - - - HD,PolyA_pol,PolyA_pol_RNAbd EH3_k127_2439893_6 640081.Dsui_0685 8.939e-66 234.0 COG0625@1|root,COG0625@2|Bacteria,1PHM1@1224|Proteobacteria,2VI65@28216|Betaproteobacteria,2KW9Y@206389|Rhodocyclales 206389|Rhodocyclales O Glutathione S-transferase - - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C_2,GST_N_3 EH3_k127_2439893_4 944435.AXAJ01000002_gene4804 6.471e-94 319.0 COG0702@1|root,COG0702@2|Bacteria,1MW54@1224|Proteobacteria,2VIBZ@28216|Betaproteobacteria,1K0ZM@119060|Burkholderiaceae 28216|Betaproteobacteria GM Nad-dependent epimerase dehydratase - - 1.6.5.3,1.6.99.3 ko:K00329,ko:K00356 ko00190,map00190 - R11945 RC00061 ko00000,ko00001,ko01000 - - - Epimerase,NAD_binding_10 EH3_k127_2439893_1 204773.HEAR2946 7.04e-163 535.0 COG0741@1|root,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2VHPK@28216|Betaproteobacteria,472CN@75682|Oxalobacteraceae 28216|Betaproteobacteria M Soluble lytic murein slt - - ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 - SLT,SLT_L EH3_k127_2439893_8 859657.RPSI07_3287 3.14e-41 166.0 COG0212@1|root,COG0212@2|Bacteria,1MZG0@1224|Proteobacteria,2VJZE@28216|Betaproteobacteria,1K4BZ@119060|Burkholderiaceae 28216|Betaproteobacteria H Belongs to the 5-formyltetrahydrofolate cyclo-ligase family fthC - 6.3.3.2 ko:K01934 ko00670,ko01100,map00670,map01100 - R02301 RC00183 ko00000,ko00001,ko01000 - - - 5-FTHF_cyc-lig EH3_k127_2439893_3 1121035.AUCH01000008_gene1036 2.625e-112 373.0 COG0685@1|root,COG0685@2|Bacteria,1MUC9@1224|Proteobacteria,2VHHI@28216|Betaproteobacteria,2KUZ9@206389|Rhodocyclales 206389|Rhodocyclales E 5,10-methylenetetrahydrofolate reductase metF - 1.5.1.20 ko:K00297 ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523 M00377 R01224,R07168 RC00081 ko00000,ko00001,ko00002,ko01000 - - - MTHFR EH3_k127_2439893_9 864073.HFRIS_021738 1.341e-33 136.0 COG1950@1|root,COG1950@2|Bacteria,1N1DF@1224|Proteobacteria,2VUY1@28216|Betaproteobacteria,474RA@75682|Oxalobacteraceae 28216|Betaproteobacteria S Mycobacterial 4 TMS phage holin, superfamily IV - - - ko:K08972 - - - - ko00000 - - - Phage_holin_4_2 EH3_k127_2439893_5 1121033.AUCF01000015_gene1390 1.918e-76 269.0 COG1893@1|root,COG1893@2|Bacteria,1MX5M@1224|Proteobacteria,2TVRD@28211|Alphaproteobacteria,2JZD3@204441|Rhodospirillales 204441|Rhodospirillales H Ketopantoate reductase PanE/ApbA C terminal - - - - - - - - - - - - ApbA,ApbA_C EH3_k127_2439893_7 1000565.METUNv1_02979 4.005e-63 217.0 COG0499@1|root,COG0499@2|Bacteria,1MUQ2@1224|Proteobacteria,2VH57@28216|Betaproteobacteria,2KVI2@206389|Rhodocyclales 206389|Rhodocyclales H May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine ahcY - 3.3.1.1 ko:K01251 ko00270,ko01100,map00270,map01100 M00035 R00192,R04936 RC00056,RC00069,RC01161,RC01243 ko00000,ko00001,ko00002,ko01000,ko01009,ko04147 - - - AdoHcyase,AdoHcyase_NAD EH3_k127_2459151_0 338969.Rfer_3775 2.239e-209 658.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VI0I@28216|Betaproteobacteria 28216|Betaproteobacteria IQ PFAM AMP-dependent synthetase and ligase - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C EH3_k127_2459151_1 742823.HMPREF9465_00568 2.864e-186 587.0 COG0012@1|root,COG0012@2|Bacteria,1MVM4@1224|Proteobacteria,2VJ1W@28216|Betaproteobacteria,4PQQ4@995019|Sutterellaceae 28216|Betaproteobacteria J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner ychF - - ko:K06942 - - - - ko00000,ko03009 - - - MMR_HSR1,YchF-GTPase_C EH3_k127_2459151_4 420662.Mpe_A1440 3.143e-110 373.0 28KUM@1|root,2ZABC@2|Bacteria,1R683@1224|Proteobacteria,2VPU1@28216|Betaproteobacteria,1KKMU@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Protein of unknown function (DUF2868) - - - - - - - - - - - - DUF2868,DUF3482 EH3_k127_2459151_2 420662.Mpe_A1439 5.956e-170 569.0 COG3596@1|root,COG3596@2|Bacteria,1R01T@1224|Proteobacteria,2WHSI@28216|Betaproteobacteria 28216|Betaproteobacteria S Domain of unknown function (DUF3482) - - - - - - - - - - - - DUF3482,MMR_HSR1 EH3_k127_2459151_6 1095769.CAHF01000014_gene2965 1.898e-77 269.0 COG3217@1|root,COG3217@2|Bacteria,1MXN2@1224|Proteobacteria,2VI15@28216|Betaproteobacteria,4739K@75682|Oxalobacteraceae 28216|Betaproteobacteria S MOSC N-terminal beta barrel domain ycbX - - ko:K07140 - - - - ko00000 - - - MOSC,MOSC_N EH3_k127_2459151_7 29581.BW37_04356 3.835e-59 220.0 COG2311@1|root,COG2311@2|Bacteria,1MWHW@1224|Proteobacteria,2W3VM@28216|Betaproteobacteria,477SI@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF418) - - - ko:K07148 - - - - ko00000 - - - DUF418 EH3_k127_2459151_5 1286093.C266_05214 5.38e-86 287.0 COG0669@1|root,COG0669@2|Bacteria,1RD9F@1224|Proteobacteria,2VMQQ@28216|Betaproteobacteria,1K08U@119060|Burkholderiaceae 28216|Betaproteobacteria F Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate coaD - 2.7.7.3 ko:K00954 ko00770,ko01100,map00770,map01100 M00120 R03035 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_like EH3_k127_2459151_8 381666.H16_A0366 9.774e-55 198.0 COG0742@1|root,COG0742@2|Bacteria,1MXKW@1224|Proteobacteria,2VRD3@28216|Betaproteobacteria,1K2YT@119060|Burkholderiaceae 28216|Betaproteobacteria L Methyltransferase rsmD - 2.1.1.171 ko:K08316 - - R07234 RC00003 ko00000,ko01000,ko03009 - - - Cons_hypoth95 EH3_k127_2459151_3 742823.HMPREF9465_00576 7.503e-128 416.0 COG0552@1|root,COG0552@2|Bacteria,1MUDU@1224|Proteobacteria,2VHK7@28216|Betaproteobacteria,4PQ3A@995019|Sutterellaceae 28216|Betaproteobacteria U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components ftsY - - ko:K03110 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2,3.A.5.7 - - SRP54,SRP54_N EH3_k127_2459151_10 926569.ANT_17500 3.572e-32 130.0 2E4R1@1|root,32ZJK@2|Bacteria,2G9B6@200795|Chloroflexi 200795|Chloroflexi S Nitrous oxide-stimulated promoter - - - - - - - - - - - - YgbA_NO EH3_k127_2459151_9 742823.HMPREF9465_00577 1.592e-36 143.0 COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2VI1K@28216|Betaproteobacteria,4PQEP@995019|Sutterellaceae 28216|Betaproteobacteria FP Ppx/GppA phosphatase family ppx - 3.6.1.11,3.6.1.40 ko:K01524 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000 - - - Ppx-GppA EH3_k127_2467650_1 1454004.AW11_04008 1.714e-63 224.0 COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,2VKCK@28216|Betaproteobacteria,1KQVQ@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria M Biotin-lipoyl like mdtA_2 - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - HlyD_D23 EH3_k127_2467650_0 1532557.JL37_14910 0.0 1276.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2VHFI@28216|Betaproteobacteria,3T1NA@506|Alcaligenaceae 28216|Betaproteobacteria V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family bepE_2 - - ko:K18138 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2 - - ACR_tran EH3_k127_2492804_1 383372.Rcas_0698 1.324e-75 267.0 COG1893@1|root,COG1893@2|Bacteria,2GAI6@200795|Chloroflexi,376A7@32061|Chloroflexia 32061|Chloroflexia H 2-dehydropantoate 2-reductase - - 1.1.1.169 ko:K00077 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R02472 RC00726 ko00000,ko00001,ko00002,ko01000 - - - ApbA,ApbA_C EH3_k127_2492804_0 795666.MW7_2511 2.646e-106 356.0 COG0583@1|root,COG0583@2|Bacteria,1MU8N@1224|Proteobacteria,2VHQY@28216|Betaproteobacteria,1K3ZB@119060|Burkholderiaceae 28216|Betaproteobacteria K Transcriptional regulator cysB - - ko:K13634 - - - - ko00000,ko03000 - - - HTH_1,LysR_substrate EH3_k127_2498297_2 1175306.GWL_27470 6.378e-155 496.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VGZM@28216|Betaproteobacteria 28216|Betaproteobacteria P Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system - - - ko:K10112 ko02010,map02010 M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1 - - ABC_tran,TOBE_2 EH3_k127_2498297_0 1095769.CAHF01000007_gene1661 5.495e-233 733.0 COG1653@1|root,COG1653@2|Bacteria,1MU64@1224|Proteobacteria,2VJYY@28216|Betaproteobacteria 28216|Betaproteobacteria G ABC-type sugar transport system, periplasmic component - - - ko:K02027 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - SBP_bac_1,SBP_bac_8 EH3_k127_2498297_1 1095769.CAHF01000007_gene1660 1.008e-160 510.0 COG1175@1|root,COG1175@2|Bacteria,1MWB7@1224|Proteobacteria,2VHA0@28216|Betaproteobacteria,477H5@75682|Oxalobacteraceae 28216|Betaproteobacteria P ABC-type sugar - - - ko:K02025,ko:K10237 ko02010,map02010 M00204,M00207 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1,3.A.1.1.17 - - BPD_transp_1 EH3_k127_2498297_3 296591.Bpro_1260 2.586e-74 254.0 COG0395@1|root,COG0395@2|Bacteria,1N4I0@1224|Proteobacteria,2VNEK@28216|Betaproteobacteria,4AEIK@80864|Comamonadaceae 28216|Betaproteobacteria P PFAM binding-protein-dependent transport systems inner membrane component - - - ko:K02026 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - BPD_transp_1 EH3_k127_2509693_2 118166.JH976537_gene1151 1.395e-15 78.0 COG1764@1|root,COG1764@2|Bacteria,1G767@1117|Cyanobacteria,1HH0Y@1150|Oscillatoriales 1117|Cyanobacteria O OsmC-like protein - - - ko:K04063 - - - - ko00000 - - - OsmC EH3_k127_2509693_0 742823.HMPREF9465_01528 7.813e-135 440.0 COG0116@1|root,COG0116@2|Bacteria,1MUQM@1224|Proteobacteria,2VHMY@28216|Betaproteobacteria,4PQMA@995019|Sutterellaceae 28216|Betaproteobacteria L THUMP domain rlmL - - ko:K07444 - - - - ko00000,ko01000 - - - THUMP,UPF0020 EH3_k127_2509693_1 331869.BAL199_16698 1.437e-52 206.0 COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,2U956@28211|Alphaproteobacteria 28211|Alphaproteobacteria FG COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases hit - - ko:K02503 - - - - ko00000,ko04147 - - - HIT EH3_k127_2521845_4 983917.RGE_36060 1.342e-63 218.0 COG1850@1|root,COG1850@2|Bacteria,1MWEB@1224|Proteobacteria,2VJF4@28216|Betaproteobacteria,1KJRD@119065|unclassified Burkholderiales 28216|Betaproteobacteria H RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site cbbL - 4.1.1.39 ko:K01601 ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200 M00165,M00166,M00532 R00024,R03140 RC00172,RC00859 ko00000,ko00001,ko00002,ko01000 - - - RuBisCO_large,RuBisCO_large_N EH3_k127_2521845_3 864051.BurJ1DRAFT_0181 9.073e-82 273.0 COG4451@1|root,COG4451@2|Bacteria,1R9ZE@1224|Proteobacteria,2VQKV@28216|Betaproteobacteria,1KKJ2@119065|unclassified Burkholderiales 28216|Betaproteobacteria C Ribulose bisphosphate carboxylase, small chain cbbS - 4.1.1.39 ko:K01602 ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200 M00165,M00166,M00532 R00024,R03140 RC00172,RC00859 ko00000,ko00001,ko00002,ko01000 - - - RuBisCO_small EH3_k127_2521845_2 983917.RGE_36030 3.488e-157 500.0 COG0464@1|root,COG0464@2|Bacteria,1MUCN@1224|Proteobacteria,2VIA8@28216|Betaproteobacteria,1KJSZ@119065|unclassified Burkholderiales 28216|Betaproteobacteria O ATPase family associated with various cellular activities (AAA) cbbX - - - - - - - - - - - AAA EH3_k127_2521845_0 395495.Lcho_3755 2.164e-190 601.0 COG0158@1|root,COG0158@2|Bacteria,1MW0E@1224|Proteobacteria,2VIJT@28216|Betaproteobacteria,1KKER@119065|unclassified Burkholderiales 28216|Betaproteobacteria G D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 fbp1 - 3.1.3.11,3.1.3.37 ko:K01086,ko:K03841 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910 M00003,M00165,M00167,M00344 R00762,R01845,R04780 RC00017 ko00000,ko00001,ko00002,ko01000,ko04147 - - - FBPase EH3_k127_2521845_1 75379.Tint_0137 1.367e-157 505.0 COG3954@1|root,COG3954@2|Bacteria,1MWN9@1224|Proteobacteria,2VHZD@28216|Betaproteobacteria,1KIVW@119065|unclassified Burkholderiales 28216|Betaproteobacteria G Phosphoribulokinase cbbP - 2.7.1.19 ko:K00855 ko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200 M00165,M00166 R01523 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - PRK EH3_k127_2524414_8 530564.Psta_3253 3.857e-09 67.0 COG0515@1|root,COG0515@2|Bacteria,2J50A@203682|Planctomycetes 530564.Psta_3253|- KLT PFAM Serine threonine protein kinase-related - - - - - - - - - - - - - EH3_k127_2524414_1 864051.BurJ1DRAFT_4671 1.8e-194 618.0 COG0624@1|root,COG0624@2|Bacteria,1MW20@1224|Proteobacteria,2VIT5@28216|Betaproteobacteria,1KKBA@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Peptidase dimerisation domain - - - - - - - - - - - - M20_dimer,Peptidase_M20 EH3_k127_2524414_2 640081.Dsui_3105 3.807e-163 524.0 COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2VHBA@28216|Betaproteobacteria,2KUPM@206389|Rhodocyclales 206389|Rhodocyclales S Domain of unknown function DUF21 tlyC - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,CorC_HlyC,DUF21 EH3_k127_2524414_6 257313.BP0689 7.362e-60 231.0 COG0797@1|root,COG3087@1|root,COG0797@2|Bacteria,COG3087@2|Bacteria,1MZ8S@1224|Proteobacteria,2VJAN@28216|Betaproteobacteria,3T4B5@506|Alcaligenaceae 28216|Betaproteobacteria M Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides rlpA - - ko:K03642 - - - - ko00000 - - - DPBB_1,SPOR EH3_k127_2524414_3 1095769.CAHF01000014_gene3088 2.536e-139 458.0 COG0772@1|root,COG0772@2|Bacteria,1MUK3@1224|Proteobacteria,2VH8Q@28216|Betaproteobacteria,472UC@75682|Oxalobacteraceae 28216|Betaproteobacteria M Peptidoglycan polymerase that is essential for cell wall elongation mrdB - - ko:K05837 - - - - ko00000,ko03036 - - - FTSW_RODA_SPOVE EH3_k127_2524414_0 1095769.CAHF01000014_gene3089 5.079e-254 809.0 COG0768@1|root,COG0768@2|Bacteria,1MV8C@1224|Proteobacteria,2VHBZ@28216|Betaproteobacteria,472AJ@75682|Oxalobacteraceae 28216|Betaproteobacteria M Catalyzes cross-linking of the peptidoglycan cell wall mrdA - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase EH3_k127_2524414_5 204773.HEAR0170 8.894e-65 234.0 COG2891@1|root,COG2891@2|Bacteria,1RBNF@1224|Proteobacteria,2VQQ3@28216|Betaproteobacteria,47417@75682|Oxalobacteraceae 28216|Betaproteobacteria M rod shape-determining protein MreD mreD - - ko:K03571 - - - - ko00000,ko03036 9.B.157.1 - - MreD EH3_k127_2524414_4 1095769.CAHF01000014_gene3091 2.988e-87 297.0 COG1792@1|root,COG1792@2|Bacteria,1N8ZS@1224|Proteobacteria,2VK0Y@28216|Betaproteobacteria,47326@75682|Oxalobacteraceae 28216|Betaproteobacteria M Involved in formation and maintenance of cell shape mreC - - ko:K03570 - - - - ko00000,ko03036 9.B.157.1 - - MreC EH3_k127_2524414_7 358220.C380_01625 2.811e-30 119.0 COG1077@1|root,COG1077@2|Bacteria,1MUMW@1224|Proteobacteria,2VIR9@28216|Betaproteobacteria,4A9TF@80864|Comamonadaceae 28216|Betaproteobacteria D TIGRFAM cell shape determining protein, MreB Mrl family mreB - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl EH3_k127_2529495_0 381666.H16_A2114 2.111e-173 554.0 COG0477@1|root,COG2814@2|Bacteria,1QTWR@1224|Proteobacteria,2VIC5@28216|Betaproteobacteria,1K04F@119060|Burkholderiaceae 28216|Betaproteobacteria EGP PFAM major facilitator superfamily MFS_1 lplT - - - - - - - - - - - MFS_1 EH3_k127_2529495_1 1453496.AT03_09970 4.068e-117 387.0 COG0787@1|root,COG0787@2|Bacteria,1MV0Q@1224|Proteobacteria,1RM8U@1236|Gammaproteobacteria 1236|Gammaproteobacteria E Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids dadX - 5.1.1.1 ko:K01775 ko00473,ko01100,ko01502,map00473,map01100,map01502 - R00401 RC00285 ko00000,ko00001,ko01000,ko01011 - - iEC55989_1330.EC55989_1285,iECIAI39_1322.ECIAI39_1880,iECO103_1326.ECO103_1292,iECO26_1355.ECO26_1703,iECSE_1348.ECSE_1238,iECUMN_1333.ECUMN_1479,iECW_1372.ECW_m1275,iEKO11_1354.EKO11_2666,iEcE24377_1341.EcE24377A_1335,iWFL_1372.ECW_m1275,iYL1228.KPN_02308 Ala_racemase_C,Ala_racemase_N EH3_k127_2529495_2 1229205.BUPH_02756 2.383e-33 133.0 COG1066@1|root,COG1066@2|Bacteria,1MUJQ@1224|Proteobacteria,2VH93@28216|Betaproteobacteria,1K1ZE@119060|Burkholderiaceae 28216|Betaproteobacteria O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function radA - - ko:K04485 - - - - ko00000,ko03400 - - - AAA_25,ATPase,ChlI,Lon_C EH3_k127_2583858_1 93220.LV28_20920 6.468e-79 282.0 COG0451@1|root,COG0451@2|Bacteria,1MVE4@1224|Proteobacteria,2VH69@28216|Betaproteobacteria,1K2B6@119060|Burkholderiaceae 28216|Betaproteobacteria F Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose hldD - 5.1.3.20 ko:K03274 ko00540,ko01100,map00540,map01100 M00064 R05176 RC01291 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Epimerase EH3_k127_2583858_0 267608.RSc0914 1.732e-124 406.0 COG2870@1|root,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,2VHNS@28216|Betaproteobacteria,1K35B@119060|Burkholderiaceae 28216|Betaproteobacteria M TIGRFAM rfaE bifunctional protein rfaE - 2.7.1.167,2.7.7.70 ko:K03272,ko:K21344 ko00540,ko01100,map00540,map01100 M00064 R05644,R05646 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_like,PfkB EH3_k127_2583858_2 75379.Tint_0327 9.981e-57 205.0 COG1216@1|root,COG1216@2|Bacteria,1NG6M@1224|Proteobacteria,2VQVQ@28216|Betaproteobacteria 28216|Betaproteobacteria S Glycosyl transferase family 2 - - - ko:K07011 - - - - ko00000 - - - Glyco_tranf_2_3,Glyco_transf_21,Glyco_transf_7C,Glycos_transf_2 EH3_k127_2591965_21 1500894.JQNN01000001_gene2960 5.47e-17 85.0 2A4J7@1|root,30T5U@2|Bacteria,1RGAU@1224|Proteobacteria,2VU2M@28216|Betaproteobacteria,473BQ@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF3426) - - - - - - - - - - - - DUF3426,zinc_ribbon_4,zinc_ribbon_5 EH3_k127_2591965_7 742823.HMPREF9465_01706 8.598e-106 352.0 COG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,2VH76@28216|Betaproteobacteria,4PQQP@995019|Sutterellaceae 28216|Betaproteobacteria J Methylates ribosomal protein L11 prmA - - ko:K02687 - - - - ko00000,ko01000,ko03009 - - - PrmA EH3_k127_2591965_2 1095769.CAHF01000014_gene2868 3.549e-253 786.0 COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,2VISB@28216|Betaproteobacteria,472TI@75682|Oxalobacteraceae 28216|Betaproteobacteria I PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain accC GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 ko:K01961 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04385 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,CPSase_L_D2 EH3_k127_2591965_15 1003200.AXXA_13659 5.087e-52 192.0 COG0511@1|root,COG0511@2|Bacteria,1RCXA@1224|Proteobacteria,2VR5S@28216|Betaproteobacteria,3T3YH@506|Alcaligenaceae 28216|Betaproteobacteria I first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA accB - - ko:K02160 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742 RC00040,RC00367 ko00000,ko00001,ko00002 - - - Biotin_lipoyl EH3_k127_2591965_13 1231391.AMZF01000110_gene883 6.856e-58 208.0 COG0757@1|root,COG0757@2|Bacteria,1RDDT@1224|Proteobacteria,2VR4Y@28216|Betaproteobacteria,3T3WE@506|Alcaligenaceae 28216|Betaproteobacteria E Catalyzes a trans-dehydration via an enolate intermediate aroQ - 4.2.1.10 ko:K03786 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - - DHquinase_II EH3_k127_2591965_17 29581.BW37_00504 1.191e-42 164.0 COG0526@1|root,COG0526@2|Bacteria,1MZ5J@1224|Proteobacteria,2VT91@28216|Betaproteobacteria,4744E@75682|Oxalobacteraceae 28216|Betaproteobacteria CO Thioredoxin-like trx - - - - - - - - - - - AhpC-TSA,Redoxin EH3_k127_2591965_19 375286.mma_2968 2.967e-34 139.0 COG2413@1|root,COG2413@2|Bacteria,1RFTH@1224|Proteobacteria,2VJC9@28216|Betaproteobacteria,473IU@75682|Oxalobacteraceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_2591965_4 264198.Reut_A2861 3.888e-204 650.0 COG0773@1|root,COG0773@2|Bacteria,1MUC5@1224|Proteobacteria,2VIX5@28216|Betaproteobacteria,1K14Y@119060|Burkholderiaceae 28216|Betaproteobacteria M Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate mpl - 6.3.2.45 ko:K02558 - - - - ko00000,ko01000 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M EH3_k127_2591965_11 795666.MW7_3169 1.215e-63 224.0 COG3150@1|root,COG3150@2|Bacteria,1MVJF@1224|Proteobacteria,2VRCD@28216|Betaproteobacteria,1K0H2@119060|Burkholderiaceae 28216|Betaproteobacteria S Uncharacterised protein family (UPF0227) yqiA - - ko:K07000 - - - - ko00000 - - - UPF0227 EH3_k127_2591965_8 1286631.X805_18260 4.144e-95 317.0 COG1028@1|root,COG1028@2|Bacteria,1N907@1224|Proteobacteria,2VJ81@28216|Betaproteobacteria,1KJSH@119065|unclassified Burkholderiales 28216|Betaproteobacteria IQ Short-chain dehydrogenase reductase SDR fabG2 - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 EH3_k127_2591965_18 1382304.JNIL01000001_gene3079 5.452e-41 161.0 COG2606@1|root,COG2606@2|Bacteria,1V3MU@1239|Firmicutes,4IFRT@91061|Bacilli,27AAS@186823|Alicyclobacillaceae 91061|Bacilli S Aminoacyl-tRNA editing domain - - - - - - - - - - - - tRNA_edit EH3_k127_2591965_12 1454004.AW11_01189 9.665e-63 229.0 COG2095@1|root,COG2095@2|Bacteria,1N689@1224|Proteobacteria,2VMIW@28216|Betaproteobacteria 28216|Betaproteobacteria U UPF0056 inner membrane protein - - - ko:K05595 - - - - ko00000,ko02000 2.A.95.1 - - MarC EH3_k127_2591965_3 1203554.HMPREF1476_00128 6.509e-212 677.0 COG0557@1|root,COG0557@2|Bacteria,1NGSQ@1224|Proteobacteria,2VHMM@28216|Betaproteobacteria,4PQTT@995019|Sutterellaceae 28216|Betaproteobacteria K RNB rnb - 3.1.13.1 ko:K01147 - - - - ko00000,ko01000,ko03016 - - - RNB EH3_k127_2591965_14 1348657.M622_11180 3.857e-57 211.0 COG0810@1|root,COG0810@2|Bacteria,1MUMT@1224|Proteobacteria,2VKSW@28216|Betaproteobacteria,2KUYN@206389|Rhodocyclales 206389|Rhodocyclales M COG0810 Periplasmic protein TonB, links inner and outer membranes - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C EH3_k127_2591965_9 469610.HMPREF0189_00332 6.92e-88 298.0 COG0169@1|root,COG0169@2|Bacteria,1MVH4@1224|Proteobacteria,2VHHC@28216|Betaproteobacteria,1KKDH@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) aroE GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25 ko:K00014 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02413 RC00206 ko00000,ko00001,ko00002,ko01000 - - - Shikimate_DH,Shikimate_dh_N EH3_k127_2591965_10 1005048.CFU_0788 6.903e-81 277.0 COG0744@1|root,COG0744@2|Bacteria,1RDAQ@1224|Proteobacteria,2VHW8@28216|Betaproteobacteria,473WN@75682|Oxalobacteraceae 28216|Betaproteobacteria M Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors mtgA - 2.4.1.129 ko:K03814 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly EH3_k127_2591965_5 640081.Dsui_0441 1.856e-178 571.0 COG2239@1|root,COG2239@2|Bacteria,1MW24@1224|Proteobacteria,2VI29@28216|Betaproteobacteria,2KUHE@206389|Rhodocyclales 206389|Rhodocyclales P Acts as a magnesium transporter mgtE - - ko:K06213 - - - - ko00000,ko02000 1.A.26.1 - - CBS,MgtE,MgtE_N EH3_k127_2591965_20 748247.AZKH_0093 1.287e-30 127.0 2EH9R@1|root,33B1M@2|Bacteria,1NH7Y@1224|Proteobacteria,2VXYE@28216|Betaproteobacteria,2KZ7T@206389|Rhodocyclales 206389|Rhodocyclales S KTSC domain - - - - - - - - - - - - KTSC EH3_k127_2591965_1 257310.BB1372 8.964e-265 821.0 COG0043@1|root,COG0043@2|Bacteria,1MU62@1224|Proteobacteria,2VH09@28216|Betaproteobacteria,3T2BR@506|Alcaligenaceae 28216|Betaproteobacteria H Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis ubiD - 4.1.1.98 ko:K03182 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04985,R04986 RC00391 ko00000,ko00001,ko00002,ko01000 - - - UbiD EH3_k127_2591965_16 1265502.KB905943_gene2747 2.566e-48 186.0 COG0741@1|root,COG0741@2|Bacteria,1RAP3@1224|Proteobacteria,2VQXG@28216|Betaproteobacteria,4ABW3@80864|Comamonadaceae 28216|Betaproteobacteria M PFAM Lytic transglycosylase catalytic - - - - - - - - - - - - SLT EH3_k127_2591965_6 342113.DM82_2262 8.945e-149 480.0 COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2VI01@28216|Betaproteobacteria,1K22Z@119060|Burkholderiaceae 28216|Betaproteobacteria E PFAM aminotransferase class I and II aspB - - - - - - - - - - - Aminotran_1_2 EH3_k127_2591965_0 1123257.AUFV01000014_gene3416 0.0 1136.0 COG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,1RN5F@1236|Gammaproteobacteria,1X2XY@135614|Xanthomonadales 135614|Xanthomonadales C Malic enzyme maeB - 1.1.1.40 ko:K00029 ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200 M00169,M00172 R00216 RC00105 ko00000,ko00001,ko00002,ko01000 - - - Malate_DH,Malic_M,PTA_PTB,malic EH3_k127_2602809_2 402626.Rpic_3730 1.658e-97 324.0 COG0451@1|root,COG0451@2|Bacteria,1MU1A@1224|Proteobacteria,2VHGA@28216|Betaproteobacteria,1K0DU@119060|Burkholderiaceae 28216|Betaproteobacteria M Nad-dependent epimerase dehydratase - - 1.1.1.410 ko:K22025 - - - - ko00000,ko01000 - - - Epimerase EH3_k127_2602809_1 1304883.KI912532_gene1618 6.542e-120 394.0 COG0284@1|root,COG0284@2|Bacteria,1MWH5@1224|Proteobacteria,2VHAB@28216|Betaproteobacteria,2KUGT@206389|Rhodocyclales 206389|Rhodocyclales F Belongs to the OMP decarboxylase family. Type 2 subfamily pyrF - 4.1.1.23 ko:K01591 ko00240,ko01100,map00240,map01100 M00051 R00965 RC00409 ko00000,ko00001,ko00002,ko01000 - - - OMPdecase EH3_k127_2602809_0 1005048.CFU_0797 8.006e-275 885.0 COG0643@1|root,COG0745@1|root,COG2198@1|root,COG0643@2|Bacteria,COG0745@2|Bacteria,COG2198@2|Bacteria,1MUAG@1224|Proteobacteria,2VJSZ@28216|Betaproteobacteria,473JA@75682|Oxalobacteraceae 28216|Betaproteobacteria T Histidine kinase pilL - - ko:K02487,ko:K06596 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko01001,ko02022,ko02035 - - - CheW,H-kinase_dim,HATPase_c,Hpt,Response_reg EH3_k127_260464_2 556268.OFAG_01409 3.806e-100 332.0 COG0172@1|root,COG0172@2|Bacteria,1MUJF@1224|Proteobacteria,2VHJJ@28216|Betaproteobacteria,473JN@75682|Oxalobacteraceae 28216|Betaproteobacteria J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b EH3_k127_260464_4 987059.RBXJA2T_11308 7.001e-37 145.0 COG0526@1|root,COG0526@2|Bacteria,1RHMS@1224|Proteobacteria,2VUYK@28216|Betaproteobacteria,1KMFJ@119065|unclassified Burkholderiales 28216|Betaproteobacteria CO Thioredoxin-like - - 5.3.4.1 ko:K01829 - - - - ko00000,ko01000 - - - Thioredoxin_7 EH3_k127_260464_0 1203554.HMPREF1476_00326 1.342e-188 599.0 COG2256@1|root,COG2256@2|Bacteria,1MUVS@1224|Proteobacteria,2VHN9@28216|Betaproteobacteria,4PQHG@995019|Sutterellaceae 28216|Betaproteobacteria L MgsA AAA+ ATPase C terminal rarA - - ko:K07478 - - - - ko00000 - - - AAA,AAA_assoc_2,MgsA_C,RuvB_N EH3_k127_260464_3 1095769.CAHF01000011_gene2597 3.758e-64 225.0 COG2834@1|root,COG2834@2|Bacteria,1PXDV@1224|Proteobacteria,2VQH0@28216|Betaproteobacteria,472W8@75682|Oxalobacteraceae 28216|Betaproteobacteria M Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) lolA - - ko:K03634 - - - - ko00000 - - - LolA EH3_k127_260464_1 402626.Rpic_2556 2.75e-105 345.0 COG1674@1|root,COG1674@2|Bacteria,1MVPI@1224|Proteobacteria,2VHJV@28216|Betaproteobacteria,1K2W2@119060|Burkholderiaceae 28216|Betaproteobacteria D PFAM cell divisionFtsK SpoIIIE ftsK - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma EH3_k127_2606022_5 648757.Rvan_0040 4.371e-17 81.0 COG1924@1|root,COG1924@2|Bacteria,1MY0N@1224|Proteobacteria,2U4V9@28211|Alphaproteobacteria 28211|Alphaproteobacteria C Benzoyl-CoA reductase subunit - - 1.3.7.8 ko:K04115 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 M00541 R02451 RC00002,RC01839 ko00000,ko00001,ko00002,ko01000 - - - BcrAD_BadFG EH3_k127_2606022_2 420662.Mpe_B0017 1.168e-35 140.0 2E4CH@1|root,32Z7Y@2|Bacteria,1NBRN@1224|Proteobacteria,2VVBB@28216|Betaproteobacteria,1KNUR@119065|unclassified Burkholderiales 28216|Betaproteobacteria S PilZ domain - - - - - - - - - - - - PilZ EH3_k127_2606022_3 1267005.KB911259_gene3924 7.14e-25 114.0 2EE49@1|root,337YY@2|Bacteria,1NE01@1224|Proteobacteria 1224|Proteobacteria S Cytochrome P460 - - - - - - - - - - - - Cytochrome_P460 EH3_k127_2606022_4 686340.Metal_0082 5.836e-18 93.0 COG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,1SD0V@1236|Gammaproteobacteria,1XFCG@135618|Methylococcales 135618|Methylococcales C PFAM Cytochrome C - - - - - - - - - - - - Cytochrome_CBB3 EH3_k127_2606022_0 1469245.JFBG01000080_gene290 5.18e-115 390.0 COG1163@1|root,COG1163@2|Bacteria,1RFPD@1224|Proteobacteria 1224|Proteobacteria S TGS domain - - - ko:K06944 - - - - ko00000 - - - MMR_HSR1,TGS EH3_k127_2606022_1 1411123.JQNH01000001_gene385 2.327e-60 214.0 COG0160@1|root,COG0160@2|Bacteria,1MWY6@1224|Proteobacteria,2TUDG@28211|Alphaproteobacteria 28211|Alphaproteobacteria E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - 2.6.1.19 ko:K00823 ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120 M00027 R00908,R01648 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 EH3_k127_262750_0 381666.H16_B2398 9.831e-249 782.0 COG3211@1|root,COG3211@2|Bacteria,1MU8T@1224|Proteobacteria,2VJ6Z@28216|Betaproteobacteria,1K59Z@119060|Burkholderiaceae 28216|Betaproteobacteria S alkaline phosphatase phoX - - ko:K07093 - - - - ko00000 - - - DUF839 EH3_k127_262750_1 365046.Rta_23850 7.349e-51 195.0 COG4119@1|root,COG4119@2|Bacteria,1RHCE@1224|Proteobacteria,2VV6B@28216|Betaproteobacteria 28216|Betaproteobacteria L NUDIX domain - - - - - - - - - - - - NUDIX EH3_k127_2629901_3 159087.Daro_4162 3.835e-53 193.0 COG2045@1|root,COG2045@2|Bacteria,1N3KG@1224|Proteobacteria,2VR4U@28216|Betaproteobacteria,2KWE8@206389|Rhodocyclales 206389|Rhodocyclales H 2-phosphosulpholactate phosphatase - - 3.1.3.71 ko:K05979 ko00680,ko01120,map00680,map01120 M00358 R05789 RC00428 ko00000,ko00001,ko00002,ko01000 - - - 2-ph_phosp EH3_k127_2629901_2 292564.Cyagr_1794 2.923e-56 205.0 COG3187@1|root,COG3187@2|Bacteria 2|Bacteria O response to heat - - - ko:K03668,ko:K09914 - - - - ko00000 - - - META EH3_k127_2629901_0 1538295.JY96_18015 1.998e-255 792.0 COG0372@1|root,COG0372@2|Bacteria,1MUKX@1224|Proteobacteria,2VIJF@28216|Betaproteobacteria,1KJII@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Belongs to the citrate synthase family gltA - 2.3.3.1 ko:K01647 ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00740 R00351 RC00004,RC00067 br01601,ko00000,ko00001,ko00002,ko01000 - - - Citrate_synt EH3_k127_2629901_4 375286.mma_1510 5.672e-19 90.0 COG2938@1|root,COG2938@2|Bacteria,1N2AS@1224|Proteobacteria,2VVYR@28216|Betaproteobacteria,474UQ@75682|Oxalobacteraceae 28216|Betaproteobacteria S Flavinator of succinate dehydrogenase - - - ko:K09159 - - - - ko00000,ko02048 - - - Sdh5 EH3_k127_2629901_1 1003200.AXXA_17771 3.309e-130 415.0 COG0479@1|root,COG0479@2|Bacteria,1MVHS@1224|Proteobacteria,2VIKC@28216|Betaproteobacteria,3T2B6@506|Alcaligenaceae 28216|Betaproteobacteria C SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 sdhB GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 ko:K00240 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - Fer2_3,Fer4_17,Fer4_8 EH3_k127_2633770_5 1095769.CAHF01000010_gene1148 2.754e-88 299.0 COG0500@1|root,COG2226@2|Bacteria,1QTWC@1224|Proteobacteria,2VQ89@28216|Betaproteobacteria,472TR@75682|Oxalobacteraceae 28216|Betaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_11 EH3_k127_2633770_4 287.DR97_66 5.939e-89 302.0 COG0491@1|root,COG0491@2|Bacteria,1MU8Q@1224|Proteobacteria,1S22I@1236|Gammaproteobacteria,1YD0U@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria S Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid gloB GO:0003674,GO:0003824,GO:0004416,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564 3.1.2.6 ko:K01069 ko00620,map00620 - R01736 RC00004,RC00137 ko00000,ko00001,ko01000 - - - HAGH_C,Lactamase_B EH3_k127_2633770_2 266264.Rmet_2205 8.568e-130 434.0 COG0741@1|root,COG0741@2|Bacteria,1MWKE@1224|Proteobacteria,2VIR7@28216|Betaproteobacteria,1JZWT@119060|Burkholderiaceae 28216|Betaproteobacteria M Lytic transglycosylase mltD - - ko:K08307 - - - - ko00000,ko01000,ko01011 - - - LysM,SLT EH3_k127_2633770_3 94624.Bpet0628 1.638e-128 426.0 COG0623@1|root,COG0623@2|Bacteria,1MV05@1224|Proteobacteria,2VIHE@28216|Betaproteobacteria,3T1RP@506|Alcaligenaceae 28216|Betaproteobacteria I Enoyl- acyl-carrier-protein reductase NADH fabI - 1.3.1.10,1.3.1.9 ko:K00208 ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212 M00083,M00572 R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671 RC00052,RC00076,RC00120 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 EH3_k127_2633770_6 864051.BurJ1DRAFT_3486 1.882e-83 298.0 COG0438@1|root,COG0438@2|Bacteria,1RB3J@1224|Proteobacteria,2VJNY@28216|Betaproteobacteria,1KN1C@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 EH3_k127_2633770_0 1005048.CFU_1696 6.745e-161 513.0 COG0709@1|root,COG0709@2|Bacteria,1MWFG@1224|Proteobacteria,2VJSD@28216|Betaproteobacteria,4732T@75682|Oxalobacteraceae 28216|Betaproteobacteria H Synthesizes selenophosphate from selenide and ATP selD - 2.7.9.3 ko:K01008 ko00450,ko01100,map00450,map01100 - R03595 RC00002,RC02878 ko00000,ko00001,ko01000,ko03016 - - - AIRS,AIRS_C EH3_k127_2633770_7 1163407.UU7_04087 2.881e-78 278.0 COG0845@1|root,COG0845@2|Bacteria,1R3R4@1224|Proteobacteria,1RNSG@1236|Gammaproteobacteria,1X48M@135614|Xanthomonadales 135614|Xanthomonadales M HlyD family secretion protein - - - ko:K13408 ko04626,map04626 M00339 - - ko00000,ko00001,ko00002,ko02000,ko02044 8.A.1 - - Biotin_lipoyl_2,HlyD_3 EH3_k127_2633770_1 420662.Mpe_A3793 8.74e-140 459.0 COG2274@1|root,COG2274@2|Bacteria,1R2T0@1224|Proteobacteria,2VP2B@28216|Betaproteobacteria,1KJK7@119065|unclassified Burkholderiales 28216|Betaproteobacteria V Peptidase C39 family cvaB - - ko:K13409 ko02010,ko04626,map02010,map04626 M00339 - - ko00000,ko00001,ko00002,ko02000,ko02044 3.A.1.110 - - ABC_membrane,ABC_tran,Peptidase_C39 EH3_k127_2691071_1 1229205.BUPH_04710 1.612e-174 550.0 COG0374@1|root,COG0374@2|Bacteria,1MWFJ@1224|Proteobacteria,2VJ52@28216|Betaproteobacteria,1K1A7@119060|Burkholderiaceae 28216|Betaproteobacteria C Belongs to the NiFe NiFeSe hydrogenase large subunit family hoxG GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.12.99.6 ko:K06281 ko00633,ko01120,map00633,map01120 - R08034 RC00250 ko00000,ko00001,ko01000 - - - NiFeSe_Hases EH3_k127_2691071_0 1245469.S58_58550 2.857e-191 603.0 COG1740@1|root,COG1740@2|Bacteria,1MWAC@1224|Proteobacteria,2TSVK@28211|Alphaproteobacteria,3JT28@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria C small subunit hupS GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.12.99.6 ko:K06282 ko00633,ko01120,map00633,map01120 - R08034 RC00250 ko00000,ko00001,ko01000 - - - NiFe_hyd_SSU_C,Oxidored_q6 EH3_k127_2691071_2 402626.Rpic_0431 2.355e-101 340.0 COG3608@1|root,COG3608@2|Bacteria,1MV55@1224|Proteobacteria,2VIYJ@28216|Betaproteobacteria,1K2I3@119060|Burkholderiaceae 28216|Betaproteobacteria S Succinylglutamate desuccinylase - - - - - - - - - - - - AstE_AspA EH3_k127_2691071_3 123899.JPQP01000018_gene239 2.089e-86 300.0 COG3741@1|root,COG3741@2|Bacteria,1MY4D@1224|Proteobacteria,2VN37@28216|Betaproteobacteria,3T8PH@506|Alcaligenaceae 28216|Betaproteobacteria E N-formylglutamate amidohydrolase - - 3.5.1.68 ko:K01458 ko00340,ko00630,map00340,map00630 - R00525 RC00165,RC00323 ko00000,ko00001,ko01000 - - - FGase EH3_k127_2691071_4 331869.BAL199_30027 1.29e-58 204.0 COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,4BS08@82117|unclassified Alphaproteobacteria 28211|Alphaproteobacteria P Oligopeptide/dipeptide transporter, C-terminal region - - - ko:K02032,ko:K10823 ko01501,ko02010,ko02024,map01501,map02010,map02024 M00239,M00439 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25 - - ABC_tran,oligo_HPY EH3_k127_2694893_1 1120999.JONM01000014_gene2863 1.775e-25 111.0 COG0454@1|root,COG0456@2|Bacteria,1RCYQ@1224|Proteobacteria,2VR75@28216|Betaproteobacteria,2KRP9@206351|Neisseriales 206351|Neisseriales K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 EH3_k127_2694893_0 375286.mma_0625 1.515e-108 368.0 COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2VI92@28216|Betaproteobacteria,473UA@75682|Oxalobacteraceae 28216|Betaproteobacteria L A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA recB - 3.1.11.5,3.6.4.12 ko:K03582,ko:K16898 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C EH3_k127_2704976_0 742823.HMPREF9465_00607 9.312e-103 341.0 COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2VH4J@28216|Betaproteobacteria,4PQJ0@995019|Sutterellaceae 28216|Betaproteobacteria S ABC transporter C-terminal domain uup - - ko:K15738 - - - - ko00000,ko02000 3.A.1.120.6 - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn EH3_k127_2704976_1 1380355.JNIJ01000008_gene1888 1.027e-58 216.0 COG0596@1|root,COG0596@2|Bacteria,1N54X@1224|Proteobacteria,2U1C2@28211|Alphaproteobacteria,3JVMZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S Alpha/beta hydrolase family - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 EH3_k127_2733923_1 296591.Bpro_0800 6.077e-32 125.0 COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,2VH42@28216|Betaproteobacteria,4AAEE@80864|Comamonadaceae 28216|Betaproteobacteria V Transport permease protein yadH - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane EH3_k127_2733923_2 887898.HMPREF0551_2527 7.103e-29 121.0 COG5007@1|root,COG5007@2|Bacteria,1MZCZ@1224|Proteobacteria,2VU0K@28216|Betaproteobacteria,1K9F0@119060|Burkholderiaceae 28216|Betaproteobacteria K Belongs to the BolA IbaG family yrbA - - - - - - - - - - - BolA EH3_k127_2733923_0 887898.HMPREF0551_2528 2.385e-154 498.0 COG0766@1|root,COG0766@2|Bacteria,1MUH7@1224|Proteobacteria,2VHZN@28216|Betaproteobacteria,1K26U@119060|Burkholderiaceae 28216|Betaproteobacteria M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase EH3_k127_2739573_1 1216976.AX27061_2658 2.781e-90 303.0 COG4181@1|root,COG4181@2|Bacteria,1MXG9@1224|Proteobacteria,2VI54@28216|Betaproteobacteria,3T3FU@506|Alcaligenaceae 28216|Betaproteobacteria Q ABC-type transport system involved in lysophospholipase L1 biosynthesis ATPase component lolD - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran EH3_k127_2739573_2 1366050.N234_07485 1.43e-68 239.0 COG2755@1|root,COG2755@2|Bacteria,1RCXZ@1224|Proteobacteria,2VRIQ@28216|Betaproteobacteria,1K41R@119060|Burkholderiaceae 28216|Betaproteobacteria E PFAM lipolytic protein G-D-S-L family tesA - 3.1.1.5 ko:K10804 ko01040,map01040 - - - ko00000,ko00001,ko01000,ko01004 - - - Lipase_GDSL_2 EH3_k127_2739573_0 375286.mma_1536 2.813e-124 410.0 COG2603@1|root,COG2603@2|Bacteria,1N4T5@1224|Proteobacteria,2VIMH@28216|Betaproteobacteria,472FU@75682|Oxalobacteraceae 28216|Betaproteobacteria H Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA selU - - ko:K06917 - - - - ko00000,ko01000,ko03016 - - - Rhodanese EH3_k127_2789724_0 1123367.C666_17390 4.374e-105 363.0 COG2199@1|root,COG3706@2|Bacteria,1QYEB@1224|Proteobacteria,2WEVD@28216|Betaproteobacteria 28216|Betaproteobacteria T Cache domain - - - - - - - - - - - - GGDEF,PAS_8,dCache_1 EH3_k127_2799134_3 522306.CAP2UW1_4163 1.51e-07 52.0 COG4290@1|root,COG4290@2|Bacteria,1MZEZ@1224|Proteobacteria,2VTZ7@28216|Betaproteobacteria,1KR1X@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria F ribonuclease rnaSA - 3.1.27.3 ko:K01167 - - - - ko00000,ko01000,ko03016,ko03019 - - - Ribonuclease EH3_k127_2799134_2 987059.RBXJA2T_02892 2.817e-28 119.0 COG2732@1|root,COG2732@2|Bacteria,1RD25@1224|Proteobacteria,2VR9C@28216|Betaproteobacteria,1KKU0@119065|unclassified Burkholderiales 28216|Betaproteobacteria K Barstar (barnase inhibitor) - - - - - - - - - - - - Barstar EH3_k127_2799134_1 76114.ebA1094 1.32e-60 219.0 COG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,2VJS2@28216|Betaproteobacteria,2KW6H@206389|Rhodocyclales 206389|Rhodocyclales J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit - - 2.1.1.193 ko:K09761 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_RNA EH3_k127_2799134_0 748247.AZKH_4604 1.01e-62 221.0 COG0421@1|root,COG0421@2|Bacteria,1MVV5@1224|Proteobacteria,2WGFP@28216|Betaproteobacteria,2KUTH@206389|Rhodocyclales 206389|Rhodocyclales E Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine speE - 2.5.1.16 ko:K00797 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R01920,R02869,R08359 RC00021,RC00053 ko00000,ko00001,ko00002,ko01000 - - - Spermine_synth EH3_k127_2803509_0 1502852.FG94_00109 1.011e-103 340.0 COG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2VHCB@28216|Betaproteobacteria,473CI@75682|Oxalobacteraceae 28216|Betaproteobacteria C NADPH quinone oxidoreductase qor1 - 1.6.5.5 ko:K00344 - - - - ko00000,ko01000 - - - ADH_N,ADH_zinc_N EH3_k127_2803509_1 713586.KB900536_gene3041 2.487e-76 269.0 COG0149@1|root,COG0149@2|Bacteria,1MWK5@1224|Proteobacteria,1RM8I@1236|Gammaproteobacteria,1WW6U@135613|Chromatiales 135613|Chromatiales G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) tpiA - 5.3.1.1 ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01015 RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - TIM EH3_k127_2803509_2 1286093.C266_18426 3.958e-21 95.0 COG1314@1|root,COG1314@2|Bacteria,1N8MF@1224|Proteobacteria,2VU0P@28216|Betaproteobacteria,1K8K0@119060|Burkholderiaceae 28216|Betaproteobacteria U Preprotein translocase SecG subunit secG - - ko:K03075 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - SecG EH3_k127_2824456_1 1121035.AUCH01000002_gene1440 1.017e-150 482.0 COG4262@1|root,COG4262@2|Bacteria,1QTYC@1224|Proteobacteria,2VK9Z@28216|Betaproteobacteria,2KVY0@206389|Rhodocyclales 206389|Rhodocyclales S Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine speE - 2.5.1.16 ko:K00797 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R01920,R02869,R08359 RC00021,RC00053 ko00000,ko00001,ko00002,ko01000 - - - Spermine_synth EH3_k127_2824456_0 1121035.AUCH01000002_gene1441 7.741e-197 627.0 COG1231@1|root,COG1231@2|Bacteria,1QWEG@1224|Proteobacteria,2WGZI@28216|Betaproteobacteria,2KU7M@206389|Rhodocyclales 206389|Rhodocyclales E Flavin containing amine oxidoreductase - - - - - - - - - - - - NAD_binding_8 EH3_k127_2831233_0 1095769.CAHF01000011_gene2087 4.84e-145 481.0 COG0760@1|root,COG0760@2|Bacteria,1MWV0@1224|Proteobacteria,2VJCZ@28216|Betaproteobacteria,472JH@75682|Oxalobacteraceae 28216|Betaproteobacteria O SurA N-terminal domain ppiD - 5.2.1.8 ko:K03770 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_2,Rotamase_3,SurA_N_3 EH3_k127_2831233_1 1198452.Jab_2c05970 0.0003688 44.0 COG2603@1|root,COG2603@2|Bacteria,1N4T5@1224|Proteobacteria,2VIMH@28216|Betaproteobacteria,472FU@75682|Oxalobacteraceae 28216|Betaproteobacteria H Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA selU - - ko:K06917 - - - - ko00000,ko01000,ko03016 - - - Rhodanese EH3_k127_2872132_2 94624.Bpet3174 7.447e-131 420.0 COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,2VHYF@28216|Betaproteobacteria,3T21Y@506|Alcaligenaceae 28216|Betaproteobacteria O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpB - - ko:K03695 ko04213,map04213 - - - ko00000,ko00001,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N EH3_k127_2872132_4 640081.Dsui_2320 1.074e-91 319.0 28I8W@1|root,2Z8BP@2|Bacteria,1N0SC@1224|Proteobacteria,2VK0J@28216|Betaproteobacteria,2KVDQ@206389|Rhodocyclales 206389|Rhodocyclales S Protein of unknown function (DUF2863) - - - - - - - - - - - - DUF2863 EH3_k127_2872132_1 316057.RPD_4302 8.203e-132 441.0 COG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,2TTUP@28211|Alphaproteobacteria,3JTA0@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria F Belongs to the 5'-nucleotidase family MA20_07595 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006213,GO:0006259,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007155,GO:0007159,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009164,GO:0009166,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019362,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0022610,GO:0031974,GO:0031981,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046135,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0051186,GO:0055086,GO:0070013,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0072524,GO:0072527,GO:0072529,GO:0090304,GO:0098609,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.1.3.5,3.6.1.45 ko:K01081,ko:K11751 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - 5_nucleotid_C,LysM,Metallophos EH3_k127_2872132_3 1304883.KI912532_gene2440 2.101e-126 417.0 COG2271@1|root,COG2271@2|Bacteria,1QU9E@1224|Proteobacteria,2WGJT@28216|Betaproteobacteria,2KU7W@206389|Rhodocyclales 206389|Rhodocyclales G Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_2872132_7 1217718.ALOU01000041_gene61 2.135e-49 187.0 COG0684@1|root,COG0684@2|Bacteria,1RH18@1224|Proteobacteria,2VR2C@28216|Betaproteobacteria,1K794@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions rraA - - ko:K02553 - - - - ko00000,ko03019 - - - RraA-like EH3_k127_2872132_0 1038869.AXAN01000010_gene5125 1.183e-246 767.0 COG2224@1|root,COG2224@2|Bacteria,1MWIF@1224|Proteobacteria,2VHWS@28216|Betaproteobacteria,1K38Q@119060|Burkholderiaceae 28216|Betaproteobacteria C Isocitrate lyase aceA - 4.1.3.1 ko:K01637 ko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200 M00012 R00479 RC00311,RC00313 ko00000,ko00001,ko00002,ko01000 - - - ICL EH3_k127_2872132_5 269482.Bcep1808_1957 2.307e-66 234.0 COG1011@1|root,COG1011@2|Bacteria,1MVWN@1224|Proteobacteria,2VI7A@28216|Betaproteobacteria,1JZT0@119060|Burkholderiaceae 28216|Betaproteobacteria S Haloacid dehalogenase, type II dhlB - 3.8.1.2 ko:K01560 ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120 - R05287 RC00697 ko00000,ko00001,ko01000 - - - HAD_2,Hydrolase EH3_k127_2872132_6 159450.NH14_23290 2.515e-50 180.0 COG2225@1|root,COG2225@2|Bacteria,1MVEV@1224|Proteobacteria,2VJK0@28216|Betaproteobacteria,1K4T4@119060|Burkholderiaceae 28216|Betaproteobacteria H Belongs to the malate synthase family aceB - 2.3.3.9 ko:K01638 ko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200 M00012 R00472 RC00004,RC00308,RC02747 ko00000,ko00001,ko00002,ko01000 - - - Malate_synthase EH3_k127_290677_1 1163617.SCD_n01574 8.698e-137 440.0 COG0027@1|root,COG0027@2|Bacteria,1N3KA@1224|Proteobacteria,2VH4M@28216|Betaproteobacteria 28216|Betaproteobacteria F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate purT - 2.1.2.2 ko:K08289 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp,Epimerase EH3_k127_290677_5 1235457.C404_14070 2.103e-19 91.0 COG4575@1|root,COG4575@2|Bacteria,1N3P5@1224|Proteobacteria,2VU7A@28216|Betaproteobacteria,1K8EH@119060|Burkholderiaceae 28216|Betaproteobacteria S Bacterial protein of unknown function (DUF883) elaB - - - - - - - - - - - DUF883 EH3_k127_290677_2 1121033.AUCF01000026_gene2933 5.829e-54 214.0 COG3447@1|root,COG4191@1|root,COG3447@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,2JPSH@204441|Rhodospirillales 204441|Rhodospirillales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,MASE1 EH3_k127_290677_3 640081.Dsui_3386 4.906e-47 180.0 COG4566@1|root,COG4566@2|Bacteria,1N6WR@1224|Proteobacteria,2VSCC@28216|Betaproteobacteria,2KYUB@206389|Rhodocyclales 206389|Rhodocyclales K Flagellar regulatory protein FleQ - - - - - - - - - - - - GerE,Response_reg EH3_k127_290677_4 420662.Mpe_A1716 2.299e-27 118.0 COG0530@1|root,COG0530@2|Bacteria,1PW8G@1224|Proteobacteria,2VMK4@28216|Betaproteobacteria,1KKKP@119065|unclassified Burkholderiales 28216|Betaproteobacteria P Sodium/calcium exchanger protein - - - ko:K07301 - - - - ko00000,ko02000 2.A.19.5 - - Na_Ca_ex EH3_k127_290677_0 935863.AWZR01000001_gene2071 9.338e-143 460.0 COG1009@1|root,COG2111@1|root,COG1009@2|Bacteria,COG2111@2|Bacteria,1MW2M@1224|Proteobacteria,1RNKN@1236|Gammaproteobacteria,1X40I@135614|Xanthomonadales 135614|Xanthomonadales CP Subunit A of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali ndhF - - ko:K05559 - - - - ko00000,ko02000 2.A.63.1 - - DUF4040,MnhB,Proton_antipo_M,Proton_antipo_N EH3_k127_2926733_1 667632.KB890188_gene3317 5.65e-104 349.0 COG0275@1|root,COG0275@2|Bacteria,1MUT4@1224|Proteobacteria,2VIYT@28216|Betaproteobacteria,1K2HM@119060|Burkholderiaceae 28216|Betaproteobacteria J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA rsmH - 2.1.1.199 ko:K03438 - - - - ko00000,ko01000,ko03009 - - - Methyltransf_5 EH3_k127_2926733_2 477184.KYC_06565 1.638e-06 59.0 COG3116@1|root,COG3116@2|Bacteria,1N95M@1224|Proteobacteria,2VVTP@28216|Betaproteobacteria,3T4ST@506|Alcaligenaceae 28216|Betaproteobacteria D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic ftsL - - ko:K03586 - - - - ko00000,ko03036 - - - FtsL EH3_k127_2926733_0 1175306.GWL_44750 1.581e-165 539.0 COG0768@1|root,COG0768@2|Bacteria,1MUNY@1224|Proteobacteria,2VIZM@28216|Betaproteobacteria,472P4@75682|Oxalobacteraceae 28216|Betaproteobacteria D Catalyzes cross-linking of the peptidoglycan cell wall at the division septum ftsI - 3.4.16.4 ko:K03587 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011,ko03036 - - - PBP_dimer,Transpeptidase EH3_k127_2965686_0 640512.BC1003_3190 9.06e-252 783.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,2VHUY@28216|Betaproteobacteria,1K0VQ@119060|Burkholderiaceae 28216|Betaproteobacteria E glutamate synthase gltB - 1.4.1.13,1.4.1.14,1.4.7.1 ko:K00265,ko:K00284 ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230 - R00021,R00093,R00114,R00248,R10086 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase EH3_k127_2965686_1 757424.Hsero_3923 9.622e-251 788.0 COG0493@1|root,COG0493@2|Bacteria,1MU2H@1224|Proteobacteria,2VIHR@28216|Betaproteobacteria,472CJ@75682|Oxalobacteraceae 28216|Betaproteobacteria C Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster gltD - 1.4.1.13,1.4.1.14 ko:K00266 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - Fer4_20,Pyr_redox_2 EH3_k127_2965686_2 1454004.AW11_02632 2.985e-131 428.0 COG0628@1|root,COG0628@2|Bacteria,1MVX7@1224|Proteobacteria,2VMKT@28216|Betaproteobacteria 28216|Betaproteobacteria S AI-2E family transporter - - - - - - - - - - - - AI-2E_transport EH3_k127_2965686_3 1245471.PCA10_14600 5.264e-19 89.0 COG2267@1|root,COG2267@2|Bacteria,1QTZP@1224|Proteobacteria,1RPB9@1236|Gammaproteobacteria,1YHC9@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria I Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_6,Hydrolase_4 EH3_k127_296592_6 1038869.AXAN01000056_gene458 1.912e-18 91.0 COG3803@1|root,COG3803@2|Bacteria,1RHYI@1224|Proteobacteria,2VSHT@28216|Betaproteobacteria,1K3V0@119060|Burkholderiaceae 28216|Betaproteobacteria S Bacterial protein of unknown function (DUF924) - - - - - - - - - - - - DUF924 EH3_k127_296592_0 383372.Rcas_2799 0.0 1130.0 COG0793@1|root,COG4946@1|root,COG0793@2|Bacteria,COG4946@2|Bacteria,2G64C@200795|Chloroflexi,376K3@32061|Chloroflexia 32061|Chloroflexia M Tricorn protease homolog - - - ko:K08676 - - - - ko00000,ko01000,ko01002 - - - PD40,Peptidase_S41,Tricorn_C1,Tricorn_PDZ EH3_k127_296592_5 420324.KI912039_gene2085 1.435e-38 148.0 2E3CR@1|root,32YC0@2|Bacteria,1N9Q9@1224|Proteobacteria,2UF5B@28211|Alphaproteobacteria,1JW8M@119045|Methylobacteriaceae 28211|Alphaproteobacteria S Nitrile hydratase beta subunit MA20_29595 - - - - - - - - - - - NHase_beta EH3_k127_296592_4 1411123.JQNH01000001_gene656 1.325e-94 324.0 28I45@1|root,2Z87Q@2|Bacteria,1R432@1224|Proteobacteria,2U3PK@28211|Alphaproteobacteria 28211|Alphaproteobacteria E NHase catalyzes the hydration of various nitrile compounds to the corresponding amides nthB - 4.2.1.84 ko:K20807 ko00364,ko00380,ko00627,ko00643,ko01120,map00364,map00380,map00627,map00643,map01120 - R04020,R05379,R05596,R07780,R07854 RC00483,RC01345,RC01432 ko00000,ko00001,ko01000 - - - NHase_beta EH3_k127_296592_2 1411123.JQNH01000001_gene655 3.013e-100 334.0 2BZ0R@1|root,2Z7U0@2|Bacteria,1MX37@1224|Proteobacteria,2TSBD@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Nitrile hydratase nthA - 4.2.1.84 ko:K01721 ko00364,ko00380,ko00627,ko00643,ko01120,map00364,map00380,map00627,map00643,map01120 - R02828,R04020,R05379,R05596,R07780,R07854 RC00483,RC00792,RC01345,RC01432 ko00000,ko00001,ko01000 - - - NHase_alpha EH3_k127_296592_3 395019.Bmul_1000 1.373e-97 325.0 COG2872@1|root,COG2872@2|Bacteria,1MY0P@1224|Proteobacteria,2VMEB@28216|Betaproteobacteria,1K3AR@119060|Burkholderiaceae 28216|Betaproteobacteria S Threonyl alanyl tRNA synthetase alaS_2 - - ko:K07050 - - - - ko00000,ko01000,ko03016 - - - tRNA-synt_2c,tRNA_SAD EH3_k127_296592_1 983917.RGE_08500 2.138e-129 429.0 COG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,2VIJ1@28216|Betaproteobacteria,1KKIM@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q Protein of unknown function (DUF1298) - - - - - - - - - - - - DUF1298,WES_acyltransf EH3_k127_2977393_2 768671.ThimaDRAFT_1335 2.188e-114 380.0 COG2829@1|root,COG2829@2|Bacteria,1PC8I@1224|Proteobacteria,1RMJH@1236|Gammaproteobacteria,1WY7I@135613|Chromatiales 135613|Chromatiales M PFAM phospholipase A1 - - 3.1.1.32,3.1.1.4 ko:K01058 ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00564,map00565,map00590,map00591,map00592,map01100,map01110 - R01315,R01316,R01317,R02053,R02054,R04034,R07064,R07379,R07387,R07859,R07860 RC00020,RC00037,RC00041,RC00094 ko00000,ko00001,ko01000 - - - PLA1 EH3_k127_2977393_1 1121127.JAFA01000002_gene1556 2.669e-164 554.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2VI5V@28216|Betaproteobacteria,1KCHF@119060|Burkholderiaceae 28216|Betaproteobacteria MU Outer membrane efflux protein - - - ko:K18139 ko01501,ko02024,map01501,map02024 M00642,M00643,M00647,M00718,M00768,M00822 - - ko00000,ko00001,ko00002,ko01504,ko02000 1.B.17,2.A.6.2 - - OEP EH3_k127_2977393_0 1380355.JNIJ01000001_gene3927 5.619e-172 555.0 COG0651@1|root,COG0651@2|Bacteria,1N6BY@1224|Proteobacteria,2TUZY@28211|Alphaproteobacteria,3JXRH@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria CP Proton-conducting membrane transporter - - - - - - - - - - - - Proton_antipo_M EH3_k127_2991190_2 380394.Lferr_0210 1.254e-47 173.0 COG3439@1|root,COG3439@2|Bacteria,1RH9Z@1224|Proteobacteria,1T9P7@1236|Gammaproteobacteria,2NDUI@225057|Acidithiobacillales 225057|Acidithiobacillales S Domain of unknown function DUF302 - - - - - - - - - - - - DUF302 EH3_k127_2991190_1 1163617.SCD_n02696 3.536e-71 254.0 COG0845@1|root,COG0845@2|Bacteria,1NQZ0@1224|Proteobacteria,2VJAC@28216|Betaproteobacteria 28216|Betaproteobacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - Biotin_lipoyl_2,HlyD_D23 EH3_k127_2991190_0 1223521.BBJX01000002_gene2676 5.678e-169 541.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2VI3F@28216|Betaproteobacteria,4ACE6@80864|Comamonadaceae 28216|Betaproteobacteria V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran EH3_k127_3019603_3 420662.Mpe_A3164 2.451e-37 141.0 COG0011@1|root,COG0011@2|Bacteria,1N0UT@1224|Proteobacteria,2VW0K@28216|Betaproteobacteria,1KNWA@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Thiamine-binding protein - - - - - - - - - - - - Thiamine_BP EH3_k127_3019603_1 1005048.CFU_3235 2.8e-65 228.0 COG1666@1|root,COG1666@2|Bacteria,1RDTF@1224|Proteobacteria,2VPZU@28216|Betaproteobacteria,47467@75682|Oxalobacteraceae 28216|Betaproteobacteria S Belongs to the UPF0234 family yajQ - - ko:K09767 - - - - ko00000 - - - DUF520 EH3_k127_3019603_0 1504672.669783356 1.718e-163 523.0 COG0192@1|root,COG0192@2|Bacteria,1MUFQ@1224|Proteobacteria,2VH7U@28216|Betaproteobacteria,4A9S3@80864|Comamonadaceae 28216|Betaproteobacteria H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme - - 2.5.1.6 ko:K00789 ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230 M00034,M00035,M00368,M00609 R00177,R04771 RC00021,RC01211 ko00000,ko00001,ko00002,ko01000 - - - S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N EH3_k127_3019603_2 762966.HMPREF9439_01864 4.98e-60 218.0 COG0515@1|root,COG0515@2|Bacteria,1N75K@1224|Proteobacteria,2W05P@28216|Betaproteobacteria,4PQYC@995019|Sutterellaceae 28216|Betaproteobacteria KLT serine threonine protein kinase - - - - - - - - - - - - - EH3_k127_3091493_3 887898.HMPREF0551_0070 9.196e-74 261.0 COG1226@1|root,COG1226@2|Bacteria,1MU1R@1224|Proteobacteria,2VJ4Z@28216|Betaproteobacteria 28216|Betaproteobacteria P TrkA-N domain protein - - - - - - - - - - - - Ion_trans_2,TrkA_N EH3_k127_3091493_4 1366050.N234_34995 2.727e-41 162.0 2E9FY@1|root,333P7@2|Bacteria,1N8S6@1224|Proteobacteria,2VWAN@28216|Betaproteobacteria,1K4AW@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_3091493_2 1380394.JADL01000008_gene3523 9.475e-83 280.0 COG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2TSX7@28211|Alphaproteobacteria,2JRUR@204441|Rhodospirillales 204441|Rhodospirillales G Class II Aldolase and Adducin N-terminal domain - - 4.1.1.104 ko:K22130 - - - - ko00000,ko01000 - - - Aldolase_II EH3_k127_3091493_1 1380394.JADL01000008_gene3522 2.846e-121 403.0 COG3395@1|root,COG3395@2|Bacteria,1MW4G@1224|Proteobacteria,2TS85@28211|Alphaproteobacteria,2JQNX@204441|Rhodospirillales 204441|Rhodospirillales S Putative sugar-binding N-terminal domain - - 2.7.1.217 ko:K21948 - - R11706,R11707 - ko00000,ko01000 - - - DUF1357_C,DUF1537 EH3_k127_3091493_6 1122138.AQUZ01000030_gene4680 1.815e-15 81.0 COG1670@1|root,COG1670@2|Bacteria,2GP87@201174|Actinobacteria,4DQYP@85009|Propionibacteriales 201174|Actinobacteria J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 EH3_k127_3091493_7 1532557.JL37_10230 0.0004391 44.0 COG1670@1|root,COG1670@2|Bacteria,1RCX2@1224|Proteobacteria,2VQS6@28216|Betaproteobacteria,3T45Y@506|Alcaligenaceae 28216|Betaproteobacteria J family acetyltransferase - - - - - - - - - - - - Acetyltransf_3 EH3_k127_3091493_0 296591.Bpro_1713 1.715e-233 729.0 COG4091@1|root,COG4091@2|Bacteria,1MUZX@1224|Proteobacteria,2VI2Z@28216|Betaproteobacteria,4AAKE@80864|Comamonadaceae 28216|Betaproteobacteria E Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,NAD_binding_3,SAF EH3_k127_3091493_5 1206101.AZXC01000010_gene104 8.676e-22 95.0 COG1529@1|root,COG1529@2|Bacteria,2GIVI@201174|Actinobacteria 201174|Actinobacteria C aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - 1.2.5.3 ko:K03520 - - R11168 RC02800 ko00000,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 EH3_k127_311775_3 1198452.Jab_2c27560 3.657e-88 292.0 COG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,2VH74@28216|Betaproteobacteria,4726Y@75682|Oxalobacteraceae 28216|Betaproteobacteria K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth rpoD - - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 EH3_k127_311775_5 1217718.ALOU01000071_gene5062 3.416e-05 54.0 COG1819@1|root,COG1819@2|Bacteria,1MVI7@1224|Proteobacteria,2VRHM@28216|Betaproteobacteria,1K4AB@119060|Burkholderiaceae 28216|Betaproteobacteria CG glycosyl transferase - - - - - - - - - - - - Glyco_transf_28,UDPGT EH3_k127_311775_0 159450.NH14_12885 1.299e-165 532.0 COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,2VH16@28216|Betaproteobacteria,1JZM8@119060|Burkholderiaceae 28216|Betaproteobacteria L Belongs to the DEAD box helicase family rhlE2 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 ko:K11927 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - DEAD,Helicase_C EH3_k127_311775_1 365046.Rta_27290 2.895e-152 493.0 COG2515@1|root,COG2515@2|Bacteria,1MVYF@1224|Proteobacteria,2VJ6S@28216|Betaproteobacteria,4AA2B@80864|Comamonadaceae 28216|Betaproteobacteria E Pyridoxal-phosphate dependent enzyme acdS - 3.5.99.7,4.4.1.15,4.4.1.25 ko:K01505,ko:K05396,ko:K17950 ko00270,map00270 - R00997,R01874,R07634 RC00382,RC00419,RC01784 ko00000,ko00001,ko01000 - - - PALP EH3_k127_311775_4 1205680.CAKO01000002_gene2692 5.862e-72 252.0 COG1794@1|root,COG1794@2|Bacteria,1MV03@1224|Proteobacteria,2U86Y@28211|Alphaproteobacteria,2JTEI@204441|Rhodospirillales 204441|Rhodospirillales M Asp/Glu/Hydantoin racemase - - - - - - - - - - - - Asp_Glu_race EH3_k127_311775_2 1268622.AVS7_04154 7.899e-95 314.0 COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,2VHYA@28216|Betaproteobacteria,4AACZ@80864|Comamonadaceae 28216|Betaproteobacteria E TIGRFAM O-acetylhomoserine O-acetylserine sulfhydrylase - - 2.5.1.49 ko:K01740 ko00270,ko01100,map00270,map01100 - R01287,R04859 RC00020,RC02821,RC02848 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP EH3_k127_3176076_2 1071679.BG57_05785 1.873e-24 108.0 COG0847@1|root,COG0847@2|Bacteria,1MV8Z@1224|Proteobacteria,2VK3W@28216|Betaproteobacteria,1K0AS@119060|Burkholderiaceae 28216|Betaproteobacteria L DNA polymerase III, epsilon subunit - - 2.7.7.7 ko:K02342 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - GIY-YIG,RNase_T EH3_k127_3176076_1 580332.Slit_1871 7.992e-89 301.0 COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,2VJ27@28216|Betaproteobacteria 28216|Betaproteobacteria S membrane - - - - - - - - - - - - VIT1 EH3_k127_3176076_0 684949.ATTJ01000001_gene2189 4.651e-169 541.0 COG4799@1|root,COG4799@2|Bacteria,1WI9K@1297|Deinococcus-Thermus 2|Bacteria I Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - - - - - - - - - - - - Carboxyl_trans EH3_k127_3179300_2 987059.RBXJA2T_03401 3.335e-85 284.0 COG0346@1|root,COG0346@2|Bacteria,1RA9H@1224|Proteobacteria,2VQ0D@28216|Betaproteobacteria,1KKQ1@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase_4 EH3_k127_3179300_1 1217718.ALOU01000057_gene413 7.806e-111 365.0 COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2VHYN@28216|Betaproteobacteria,1K1Y9@119060|Burkholderiaceae 28216|Betaproteobacteria E abc transporter livF - - ko:K01996 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C EH3_k127_3179300_0 398578.Daci_5352 8.888e-121 402.0 COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2VJM6@28216|Betaproteobacteria,4A9JJ@80864|Comamonadaceae 28216|Betaproteobacteria E PFAM ABC transporter related livG - - ko:K01995 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C EH3_k127_3179300_3 1144342.PMI40_03101 2.347e-72 248.0 COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2VH43@28216|Betaproteobacteria,4726A@75682|Oxalobacteraceae 28216|Betaproteobacteria E Belongs to the binding-protein-dependent transport system permease family livM - - ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_322558_1 667632.KB890169_gene5009 2.53e-112 364.0 COG1104@1|root,COG1104@2|Bacteria,1MU1C@1224|Proteobacteria,2VH91@28216|Betaproteobacteria,1K14U@119060|Burkholderiaceae 28216|Betaproteobacteria E Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins iscS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 EH3_k127_322558_2 626418.bglu_1g24690 3.792e-69 236.0 COG0822@1|root,COG0822@2|Bacteria,1RD5K@1224|Proteobacteria,2VQ2I@28216|Betaproteobacteria,1K6Y7@119060|Burkholderiaceae 28216|Betaproteobacteria C A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters iscU - - ko:K04488 - - - - ko00000 - - - NifU_N EH3_k127_322558_3 395495.Lcho_1045 4.023e-55 194.0 COG0316@1|root,COG0316@2|Bacteria,1RH6T@1224|Proteobacteria,2VSKY@28216|Betaproteobacteria,1KM71@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Belongs to the HesB IscA family iscA - - ko:K13628 - - - - ko00000,ko03016 - - - Fe-S_biosyn EH3_k127_322558_5 1158292.JPOE01000002_gene1568 1.199e-48 181.0 COG1076@1|root,COG1076@2|Bacteria,1RHZX@1224|Proteobacteria,2VSD5@28216|Betaproteobacteria,1KKTV@119065|unclassified Burkholderiales 28216|Betaproteobacteria O Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA hscB - - ko:K04082 - - - - ko00000,ko03029,ko03110 - - - DnaJ,HSCB_C EH3_k127_322558_0 1095769.CAHF01000010_gene1198 2.288e-282 879.0 COG0443@1|root,COG0443@2|Bacteria,1MVQI@1224|Proteobacteria,2VHGV@28216|Betaproteobacteria,472BD@75682|Oxalobacteraceae 28216|Betaproteobacteria O Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB hscA GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - ko:K04044 - - - - ko00000,ko03110 1.A.33 - - HSP70 EH3_k127_322558_4 640081.Dsui_2376 8.552e-49 178.0 COG0633@1|root,COG0633@2|Bacteria,1RHDC@1224|Proteobacteria,2VSQE@28216|Betaproteobacteria,2KWP0@206389|Rhodocyclales 206389|Rhodocyclales C Ferredoxin, 2Fe-2S type, ISC system - - - ko:K04755 - - - - ko00000 - - - Fer2 EH3_k127_322558_6 243160.BMA1702 2.984e-25 111.0 COG2975@1|root,COG2975@2|Bacteria,1N7C1@1224|Proteobacteria,2VVQU@28216|Betaproteobacteria,1K9HY@119060|Burkholderiaceae 28216|Betaproteobacteria S Fe-S assembly protein IscX iscX - - - - - - - - - - - Fe-S_assembly EH3_k127_322558_7 1265502.KB905947_gene1070 6.085e-23 99.0 COG0347@1|root,COG0347@2|Bacteria,1MZ43@1224|Proteobacteria,2VWAG@28216|Betaproteobacteria 28216|Betaproteobacteria E nitrogen regulatory protein P-II - - - - - - - - - - - - - EH3_k127_327973_3 1454004.AW11_00226 3.396e-36 142.0 COG2165@1|root,COG2165@2|Bacteria,1MZ5I@1224|Proteobacteria,2VU7P@28216|Betaproteobacteria 28216|Betaproteobacteria NU Type II secretory pathway, pseudopilin - - - - - - - - - - - - - EH3_k127_327973_2 1218084.BBJK01000086_gene5768 2.138e-39 159.0 COG2165@1|root,COG2165@2|Bacteria,1N1QJ@1224|Proteobacteria,2VTYJ@28216|Betaproteobacteria,1K92I@119060|Burkholderiaceae 28216|Betaproteobacteria NU Prokaryotic N-terminal methylation motif gspG4 - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSG EH3_k127_327973_1 1095769.CAHF01000022_gene429 5.761e-58 218.0 COG2165@1|root,COG2165@2|Bacteria,1RGZZ@1224|Proteobacteria,2VSZ6@28216|Betaproteobacteria,4773W@75682|Oxalobacteraceae 28216|Betaproteobacteria U prepilin-type N-terminal cleavage methylation - - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl EH3_k127_327973_0 267608.RSp0143 2.168e-189 614.0 COG3063@1|root,COG4796@1|root,COG3063@2|Bacteria,COG4796@2|Bacteria,1QUY7@1224|Proteobacteria,2VJ8Z@28216|Betaproteobacteria,1K5MF@119060|Burkholderiaceae 28216|Betaproteobacteria U Secretin and TonB N terminus short domain - - - ko:K02453 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - Cohesin,STN,Secretin,Secretin_N EH3_k127_327973_5 267608.RSp0144 1.572e-10 72.0 2E5FR@1|root,3307F@2|Bacteria,1N89J@1224|Proteobacteria,2VVS4@28216|Betaproteobacteria,1K941@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_327973_6 1236959.BAMT01000003_gene474 9.601e-07 61.0 2DTY9@1|root,33N71@2|Bacteria,1R36J@1224|Proteobacteria,2WIFU@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_327973_7 1454004.AW11_00756 0.0009758 51.0 2E3Q5@1|root,32YN4@2|Bacteria,1NA23@1224|Proteobacteria,2VVXW@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - PilN EH3_k127_327973_4 748247.AZKH_1097 3.067e-12 74.0 2AG9C@1|root,316EV@2|Bacteria,1PXG0@1224|Proteobacteria,2WCW4@28216|Betaproteobacteria,2KXAC@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - EH3_k127_32876_0 666685.R2APBS1_3742 1.254e-25 113.0 2AQTF@1|root,31G1I@2|Bacteria,1QDTY@1224|Proteobacteria,1T9Z0@1236|Gammaproteobacteria,1X8GI@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - EH3_k127_32876_1 340.xcc-b100_3967 7.895e-19 88.0 COG1652@1|root,COG1652@2|Bacteria,1N3P8@1224|Proteobacteria,1SY85@1236|Gammaproteobacteria,1X82C@135614|Xanthomonadales 135614|Xanthomonadales S peptidoglycan-binding protein, lysm - - - - - - - - - - - - LysM EH3_k127_32876_2 485915.Dret_1838 1.298e-15 85.0 COG2270@1|root,COG2270@2|Bacteria,1MWXB@1224|Proteobacteria,42N2B@68525|delta/epsilon subdivisions,2WJS9@28221|Deltaproteobacteria,2MA3S@213115|Desulfovibrionales 28221|Deltaproteobacteria S Vacuole effluxer Atg22 like - - - ko:K06902 ko04138,map04138 - - - ko00000,ko00001,ko02000,ko04131 2.A.1.24,9.A.15.1 - - ATG22 EH3_k127_329446_5 742823.HMPREF9465_02301 9.135e-88 296.0 COG0015@1|root,COG0015@2|Bacteria,1MV4B@1224|Proteobacteria,2VI2T@28216|Betaproteobacteria,4PQMS@995019|Sutterellaceae 28216|Betaproteobacteria F Adenylosuccinate lyase C-terminal purB - 4.3.2.2 ko:K01756 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048,M00049 R01083,R04559 RC00379,RC00444,RC00445 ko00000,ko00001,ko00002,ko01000 - - - ASL_C,Lyase_1 EH3_k127_329446_4 977880.RALTA_A2601 4.037e-89 299.0 COG0625@1|root,COG0625@2|Bacteria,1RHSK@1224|Proteobacteria,2VIJ5@28216|Betaproteobacteria,1K11G@119060|Burkholderiaceae 28216|Betaproteobacteria O Glutathione S-transferase yibF - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_C_2,GST_N_3 EH3_k127_329446_6 379066.GAU_3810 5.157e-85 307.0 COG2423@1|root,COG2423@2|Bacteria,1ZU0A@142182|Gemmatimonadetes 142182|Gemmatimonadetes E Ornithine cyclodeaminase/mu-crystallin family - - 1.5.1.25,4.3.1.12 ko:K01750,ko:K18258 ko00330,ko01110,ko01130,ko01230,map00330,map01110,map01130,map01230 - R00671 RC00354 ko00000,ko00001,ko01000,ko04147 - - - OCD_Mu_crystall EH3_k127_329446_1 1434929.X946_4542 1.917e-131 441.0 COG0665@1|root,COG0665@2|Bacteria,1MXD1@1224|Proteobacteria,2VKJ5@28216|Betaproteobacteria,1K0VS@119060|Burkholderiaceae 28216|Betaproteobacteria E fad dependent oxidoreductase - - 1.4.99.6 ko:K19746 ko00472,ko01100,map00472,map01100 - R11018 RC00006 ko00000,ko00001,ko01000 - - - DAO EH3_k127_329446_7 1235457.C404_21570 1.479e-71 244.0 COG0315@1|root,COG0315@2|Bacteria,1RCYZ@1224|Proteobacteria,2VR7B@28216|Betaproteobacteria,1K4PP@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) moaC - 4.6.1.17 ko:K03637 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R11372 RC03425 ko00000,ko00001,ko01000 - - - MoaC EH3_k127_329446_2 742823.HMPREF9465_00485 5.098e-127 426.0 COG4783@1|root,COG4783@2|Bacteria,1MVFV@1224|Proteobacteria,2VHAY@28216|Betaproteobacteria,4PQ8N@995019|Sutterellaceae 28216|Betaproteobacteria S Peptidase family M48 yggG_1 - - - - - - - - - - - Peptidase_M48,TPR_19 EH3_k127_329446_0 266264.Rmet_2452 2.385e-187 593.0 COG0492@1|root,COG0492@2|Bacteria,1MW14@1224|Proteobacteria,2VGZS@28216|Betaproteobacteria,1K1VD@119060|Burkholderiaceae 28216|Betaproteobacteria C Ferredoxin--NADP reductase trxB2 - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_2,Pyr_redox_3 EH3_k127_329446_3 243231.GSU1538 3.642e-122 402.0 COG1858@1|root,COG1858@2|Bacteria,1MV70@1224|Proteobacteria,42N38@68525|delta/epsilon subdivisions,2WK56@28221|Deltaproteobacteria 28221|Deltaproteobacteria C cytochrome c peroxidase - - - - - - - - - - - - CCP_MauG,Cytochrom_C EH3_k127_3318743_1 243233.MCA1435 8.279e-72 246.0 COG1216@1|root,COG1216@2|Bacteria,1NM61@1224|Proteobacteria,1RRUD@1236|Gammaproteobacteria,1XFCW@135618|Methylococcales 135618|Methylococcales S Glycosyl transferase - - - ko:K07011 - - - - ko00000 - - - Glyco_tranf_2_3,Glycos_transf_2 EH3_k127_3318743_2 768671.ThimaDRAFT_3247 2.441e-71 244.0 COG1045@1|root,COG1045@2|Bacteria,1RA58@1224|Proteobacteria,1S5KZ@1236|Gammaproteobacteria 1236|Gammaproteobacteria E serine acetyltransferase wcaB - 2.3.1.30 ko:K00640,ko:K03819 ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111 M00021 R00586 RC00004,RC00041 ko00000,ko00001,ko00002,ko01000 - - iECW_1372.ECW_m2215,iWFL_1372.ECW_m2215 Hexapep EH3_k127_3318743_0 261292.Nit79A3_0403 3.953e-87 293.0 COG0745@1|root,COG0745@2|Bacteria,1RBJ1@1224|Proteobacteria,2VMZX@28216|Betaproteobacteria 28216|Betaproteobacteria K response regulator - - - ko:K07657 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C EH3_k127_3326882_4 231434.JQJH01000013_gene2961 8.596e-06 49.0 COG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,2V3WU@28211|Alphaproteobacteria,3NBVV@45404|Beijerinckiaceae 28211|Alphaproteobacteria C Cytochrome c - - - - - - - - - - - - Cytochrom_C EH3_k127_3326882_1 1125863.JAFN01000001_gene2493 1.92e-76 271.0 COG2864@1|root,COG2864@2|Bacteria,1NJEJ@1224|Proteobacteria,42NQM@68525|delta/epsilon subdivisions,2WK76@28221|Deltaproteobacteria 28221|Deltaproteobacteria C denitrification pathway cbcY - - - - - - - - - - - Cytochrom_c3_2,Ni_hydr_CYTB EH3_k127_3326882_0 452637.Oter_2603 7.655e-88 304.0 COG2864@1|root,COG2864@2|Bacteria 2|Bacteria C formate dehydrogenase cbcY - - - - - - - - - - - Cytochrom_c3_2,Cytochrome_C7,Ni_hydr_CYTB,Paired_CXXCH_1,Rhodanese EH3_k127_3326882_5 1472716.KBK24_0108665 0.0001317 49.0 COG4654@1|root,COG4654@2|Bacteria,1N6UN@1224|Proteobacteria,2VW1Y@28216|Betaproteobacteria,1K982@119060|Burkholderiaceae 28216|Betaproteobacteria C cytochrome C - - - ko:K08738 ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00595 R10151 RC03151,RC03152 ko00000,ko00001,ko00002 3.D.4.6 - - Cytochrom_C,Cytochrome_CBB3 EH3_k127_3326882_3 426114.THI_0696 1.736e-07 60.0 2DNEG@1|root,32X40@2|Bacteria,1R7P4@1224|Proteobacteria,2VY6D@28216|Betaproteobacteria 28216|Betaproteobacteria S LTXXQ motif family protein - - - - - - - - - - - - LTXXQ EH3_k127_3326882_2 640081.Dsui_1146 3.237e-11 64.0 COG2042@1|root,COG3376@2|Bacteria,1MUYH@1224|Proteobacteria,2VJDC@28216|Betaproteobacteria,2KYK1@206389|Rhodocyclales 206389|Rhodocyclales P High-affinity nickel-transport protein - - - ko:K07241 - - - - ko00000,ko02000 2.A.52.1 - - NicO EH3_k127_3329756_6 1123393.KB891316_gene1660 1.247e-40 156.0 COG1452@1|root,COG1452@2|Bacteria,1MUJC@1224|Proteobacteria,2VIJ7@28216|Betaproteobacteria,1KRHD@119069|Hydrogenophilales 119069|Hydrogenophilales M Organic solvent tolerance protein - - - ko:K04744 - - - - ko00000,ko02000 1.B.42.1 - - OstA_C EH3_k127_3329756_0 1095769.CAHF01000001_gene3456 7.159e-140 459.0 COG0760@1|root,COG0760@2|Bacteria,1MVB3@1224|Proteobacteria,2VHHS@28216|Betaproteobacteria,47344@75682|Oxalobacteraceae 28216|Betaproteobacteria O Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation surA - 5.2.1.8 ko:K03771 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_3,SurA_N EH3_k127_3329756_1 243365.CV_4231 4.163e-113 374.0 COG1995@1|root,COG1995@2|Bacteria,1MX5W@1224|Proteobacteria,2VJN0@28216|Betaproteobacteria,2KPTQ@206351|Neisseriales 206351|Neisseriales H Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) pdxA - 1.1.1.262 ko:K00097 ko00750,ko01100,map00750,map01100 M00124 R05681,R05837,R07406 RC00089,RC00675,RC01475 ko00000,ko00001,ko00002,ko01000 - - - PdxA EH3_k127_3329756_3 497321.C664_14683 2.764e-79 287.0 COG0030@1|root,COG0030@2|Bacteria,1MVNU@1224|Proteobacteria,2VH15@28216|Betaproteobacteria,2KUK6@206389|Rhodocyclales 206389|Rhodocyclales J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits ksgA - 2.1.1.182 ko:K02528 - - R10716 RC00003,RC03257 ko00000,ko01000,ko03009 - - - RrnaAD EH3_k127_3329756_5 365046.Rta_11380 3.273e-60 215.0 COG0346@1|root,COG0346@2|Bacteria,1RCYX@1224|Proteobacteria,2VR7R@28216|Betaproteobacteria,4AE81@80864|Comamonadaceae 28216|Betaproteobacteria E Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione gloA - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase EH3_k127_3329756_4 977880.RALTA_A0474 6.43e-68 251.0 COG1451@1|root,COG1451@2|Bacteria,1MXZU@1224|Proteobacteria,2VNC5@28216|Betaproteobacteria,1K1N3@119060|Burkholderiaceae 28216|Betaproteobacteria S Metal-dependent hydrolase - - - ko:K07043 - - - - ko00000 - - - DUF45 EH3_k127_3329756_2 511.JT27_10675 2.349e-88 298.0 COG0204@1|root,COG0204@2|Bacteria,1MY51@1224|Proteobacteria,2VNAX@28216|Betaproteobacteria,3T34W@506|Alcaligenaceae 28216|Betaproteobacteria I Acyltransferase nlaB - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase EH3_k127_3331757_6 1159870.KB907784_gene705 4.925e-09 70.0 2E4CR@1|root,32Z86@2|Bacteria,1N7UZ@1224|Proteobacteria,2VVR1@28216|Betaproteobacteria,3T4QG@506|Alcaligenaceae 28216|Betaproteobacteria S NADH-dependant formate dehydrogenase delta subunit FdsD fdsD - 1.17.1.9 ko:K00126 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - FdsD EH3_k127_3331757_0 395019.Bmul_2366 0.0 1508.0 COG3383@1|root,COG3383@2|Bacteria,1QTZB@1224|Proteobacteria,2VP2Q@28216|Betaproteobacteria,1JZNE@119060|Burkholderiaceae 28216|Betaproteobacteria C Formate dehydrogenase alpha subunit fdsA - 1.17.1.9 ko:K00123 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - Fer2_4,Fer4,Fer4_7,Fer4_9,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,NADH-G_4Fe-4S_3 EH3_k127_3331757_1 398578.Daci_1860 1.569e-273 857.0 COG1894@1|root,COG1905@1|root,COG1894@2|Bacteria,COG1905@2|Bacteria,1MV8F@1224|Proteobacteria,2VIGR@28216|Betaproteobacteria,4ABWC@80864|Comamonadaceae 28216|Betaproteobacteria C Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit fdsB - - ko:K00124 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001 - - - Complex1_51K,NADH_4Fe-4S,SLBB EH3_k127_3331757_5 398527.Bphyt_6221 7.67e-35 153.0 COG1993@1|root,COG1993@2|Bacteria,1MZ79@1224|Proteobacteria,2VU3X@28216|Betaproteobacteria,1K7XP@119060|Burkholderiaceae 28216|Betaproteobacteria S Uncharacterized ACR, COG1993 - - - - - - - - - - - - DUF190 EH3_k127_3331757_4 279714.FuraDRAFT_2451 4.677e-42 158.0 COG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,2VUBZ@28216|Betaproteobacteria,2KRUM@206351|Neisseriales 206351|Neisseriales D Important for reducing fluoride concentration in the cell, thus reducing its toxicity crcB - - ko:K06199 - - - - ko00000,ko02000 1.A.43.1,1.A.43.2,1.A.43.3 - - CRCB EH3_k127_3331757_2 1040987.AZUY01000035_gene4208 1.024e-140 463.0 COG0111@1|root,COG0111@2|Bacteria,1NU4B@1224|Proteobacteria,2TRM8@28211|Alphaproteobacteria,43NZ1@69277|Phyllobacteriaceae 28211|Alphaproteobacteria EH D-isomer specific 2-hydroxyacid dehydrogenase catalytic MA20_13185 - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C EH3_k127_3331757_3 1123355.JHYO01000023_gene2360 9.343e-129 416.0 COG0160@1|root,COG0160@2|Bacteria,1MWY6@1224|Proteobacteria,2TUDG@28211|Alphaproteobacteria,36Z6S@31993|Methylocystaceae 28211|Alphaproteobacteria E Aminotransferase class-III - - 2.6.1.19 ko:K00823 ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120 M00027 R00908,R01648 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 EH3_k127_335288_2 944435.AXAJ01000004_gene2324 3.904e-42 157.0 2AFCJ@1|root,315C6@2|Bacteria,1RH66@1224|Proteobacteria,2VSTN@28216|Betaproteobacteria,1K786@119060|Burkholderiaceae 28216|Betaproteobacteria S Domain of unknown function (DUF1841) - - - - - - - - - - - - DUF1841 EH3_k127_335288_4 153948.NAL212_0199 6.735e-22 99.0 COG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,2VUTK@28216|Betaproteobacteria,373BI@32003|Nitrosomonadales 28216|Betaproteobacteria C Cytochrome c, class I - - - - - - - - - - - - Cytochrom_C,Cytochrome_CBB3 EH3_k127_335288_3 391735.Veis_2356 1.645e-32 129.0 COG2863@1|root,COG2863@2|Bacteria,1MZU1@1224|Proteobacteria,2VU50@28216|Betaproteobacteria,4AAKY@80864|Comamonadaceae 28216|Betaproteobacteria C Cytochrome c class I cytC2 - - - - - - - - - - - Cytochrom_C,Cytochrome_CBB3 EH3_k127_335288_0 497321.C664_14069 1.393e-150 484.0 COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2VH9H@28216|Betaproteobacteria,2KVTW@206389|Rhodocyclales 206389|Rhodocyclales O ATPase (AAA - - - - - - - - - - - - AAA,AAA_5 EH3_k127_335288_1 1437824.BN940_06796 1.008e-82 279.0 COG1670@1|root,COG1670@2|Bacteria,1MXEE@1224|Proteobacteria,2VKTD@28216|Betaproteobacteria,3T905@506|Alcaligenaceae 28216|Betaproteobacteria J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 EH3_k127_3357730_2 326427.Cagg_0379 9.068e-50 179.0 COG4799@1|root,COG4799@2|Bacteria,2G5IX@200795|Chloroflexi,376MS@32061|Chloroflexia 32061|Chloroflexia I PFAM carboxyl transferase - - - - - - - - - - - - Carboxyl_trans EH3_k127_3357730_3 326427.Cagg_0380 5.625e-31 126.0 COG3630@1|root,COG3630@2|Bacteria 2|Bacteria C sodium ion export across plasma membrane oadG GO:0003674,GO:0003824,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008150,GO:0008948,GO:0015672,GO:0016829,GO:0016830,GO:0016831,GO:0030001,GO:0051179,GO:0051234 4.1.1.3 ko:K01573 ko00620,ko01100,map00620,map01100 - R00217 RC00040 ko00000,ko00001,ko01000,ko02000 3.B.1.1.1 - - OAD_gamma EH3_k127_3357730_5 926569.ANT_05820 4.577e-22 101.0 COG4770@1|root,COG4770@2|Bacteria 2|Bacteria I CoA carboxylase activity gcdC - 2.1.3.1,4.1.1.70,6.4.1.3 ko:K01615,ko:K01965,ko:K02160,ko:K17490 ko00061,ko00280,ko00362,ko00620,ko00630,ko00640,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00280,map00362,map00620,map00630,map00640,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00373,M00376,M00741 R00353,R00742,R01859,R03028 RC00040,RC00097,RC00367,RC00609,RC00832 ko00000,ko00001,ko00002,ko01000,ko02000 3.B.1.1.3 - - Biotin_lipoyl EH3_k127_3357730_0 684949.ATTJ01000001_gene2186 1.263e-180 571.0 COG1883@1|root,COG1883@2|Bacteria 2|Bacteria C oxaloacetate decarboxylase activity oadB - 4.1.1.3 ko:K01572 ko00620,ko01100,map00620,map01100 - R00217 RC00040 ko00000,ko00001,ko01000,ko02000 3.B.1.1.1 - - OAD_beta EH3_k127_3357730_1 767817.Desgi_0889 1.249e-84 287.0 COG2267@1|root,COG2267@2|Bacteria,1VDKR@1239|Firmicutes,24YIZ@186801|Clostridia,264S4@186807|Peptococcaceae 186801|Clostridia I Alpha/beta hydrolase family - - - - - - - - - - - - - EH3_k127_3357730_4 765911.Thivi_3158 1.365e-27 113.0 COG0702@1|root,COG0702@2|Bacteria,1MW54@1224|Proteobacteria,1RNS7@1236|Gammaproteobacteria,1WXFK@135613|Chromatiales 135613|Chromatiales GM nucleoside-diphosphate sugar epimerase - - - - - - - - - - - - DUF2867,NAD_binding_10 EH3_k127_3361969_3 1095769.CAHF01000005_gene1621 1.848e-50 183.0 COG0445@1|root,COG0445@2|Bacteria,1MU6F@1224|Proteobacteria,2VIGG@28216|Betaproteobacteria,472AG@75682|Oxalobacteraceae 28216|Betaproteobacteria D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 gidA - - ko:K03495 - - R08701 RC00053,RC00209,RC00870 ko00000,ko03016,ko03036 - - - GIDA,GIDA_assoc EH3_k127_3361969_2 1123392.AQWL01000013_gene2371 1.347e-54 199.0 COG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,2VR3B@28216|Betaproteobacteria,1KRP8@119069|Hydrogenophilales 119069|Hydrogenophilales J rRNA small subunit methyltransferase G - - 2.1.1.170 ko:K03501 - - - - ko00000,ko01000,ko03009,ko03036 - - - GidB EH3_k127_3361969_5 1502852.FG94_01200 4.842e-48 181.0 COG3040@1|root,COG3040@2|Bacteria,1RDAI@1224|Proteobacteria,2VRSU@28216|Betaproteobacteria,474F4@75682|Oxalobacteraceae 28216|Betaproteobacteria M Lipocalin-like domain blc - - ko:K03098 - - - - ko00000,ko04147 - - - Lipocalin_2 EH3_k127_3361969_6 644107.SL1157_0327 5.285e-47 174.0 COG2128@1|root,COG2128@2|Bacteria,1RD2I@1224|Proteobacteria,2U7MW@28211|Alphaproteobacteria,4NDDT@97050|Ruegeria 28211|Alphaproteobacteria O Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - - - - - - - - - - CMD EH3_k127_3361969_0 1095769.CAHF01000005_gene1618 1.753e-128 415.0 COG1192@1|root,COG1192@2|Bacteria,1MV43@1224|Proteobacteria,2VHNK@28216|Betaproteobacteria,473F2@75682|Oxalobacteraceae 28216|Betaproteobacteria D 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family parA - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 EH3_k127_3361969_4 983917.RGE_00590 2.816e-49 186.0 COG0454@1|root,COG0456@2|Bacteria,1N8AT@1224|Proteobacteria,2WE9A@28216|Betaproteobacteria 28216|Betaproteobacteria K FR47-like protein - - - - - - - - - - - - Acetyltransf_1 EH3_k127_3361969_1 626418.bglu_1g00680 2.792e-98 327.0 COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,2VIG0@28216|Betaproteobacteria,1K08J@119060|Burkholderiaceae 28216|Betaproteobacteria K Belongs to the ParB family parB - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc EH3_k127_3377543_2 388051.AUFE01000048_gene2402 9.881e-127 416.0 COG0599@1|root,COG2021@1|root,COG0599@2|Bacteria,COG2021@2|Bacteria,1RJU6@1224|Proteobacteria,2VSYU@28216|Betaproteobacteria 28216|Betaproteobacteria E 4-carboxymuconolactone decarboxylase pcaC - 4.1.1.44 ko:K01607 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 - R03470 RC00938 ko00000,ko00001,ko01000 - - - Abhydrolase_1,CMD EH3_k127_3377543_3 375286.mma_0443 3.284e-116 383.0 COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2VI82@28216|Betaproteobacteria,474ZH@75682|Oxalobacteraceae 28216|Betaproteobacteria S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B EH3_k127_3377543_1 29581.BW37_02857 2.29e-152 494.0 COG0373@1|root,COG0373@2|Bacteria,1MU41@1224|Proteobacteria,2VHNC@28216|Betaproteobacteria,472CX@75682|Oxalobacteraceae 28216|Betaproteobacteria H Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) hemA - 1.2.1.70 ko:K02492 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R04109 RC00055,RC00149 ko00000,ko00001,ko00002,ko01000 - - - GlutR_N,GlutR_dimer,Shikimate_DH EH3_k127_3377543_0 267608.RSc2901 7.142e-167 542.0 COG0216@1|root,COG0216@2|Bacteria,1MV28@1224|Proteobacteria,2VJKV@28216|Betaproteobacteria,1K2D1@119060|Burkholderiaceae 28216|Betaproteobacteria J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA prfA - - ko:K02835 - - - - ko00000,ko03012 - - - PCRF,RF-1 EH3_k127_3377543_5 62928.azo0982 2.322e-72 254.0 COG2890@1|root,COG2890@2|Bacteria,1MXCQ@1224|Proteobacteria,2VP72@28216|Betaproteobacteria,2KW1H@206389|Rhodocyclales 206389|Rhodocyclales J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif prmC - 2.1.1.297 ko:K02493 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03012 - - - MTS EH3_k127_3377543_4 1031711.RSPO_c00602 1.036e-79 277.0 COG0163@1|root,COG0163@2|Bacteria,1RA0P@1224|Proteobacteria,2VIWQ@28216|Betaproteobacteria,1K1WK@119060|Burkholderiaceae 28216|Betaproteobacteria H Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN ubiX - 2.5.1.129 ko:K03186 ko00130,ko00627,ko00940,ko01100,ko01110,ko01120,ko01220,map00130,map00627,map00940,map01100,map01110,map01120,map01220 M00117 R01238,R02952,R03367,R04985,R04986,R11225 RC00391,RC00814,RC03392 ko00000,ko00001,ko00002,ko01000 - - - Flavoprotein EH3_k127_3382129_2 1121033.AUCF01000037_gene3918 3.182e-90 309.0 COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2U51A@28211|Alphaproteobacteria,2JSM8@204441|Rhodospirillales 204441|Rhodospirillales M Belongs to the DegT DnrJ EryC1 family - - - - - - - - - - - - DegT_DnrJ_EryC1 EH3_k127_3382129_0 338969.Rfer_2722 1.257e-237 756.0 COG2274@1|root,COG2274@2|Bacteria,1R2T0@1224|Proteobacteria,2VP2B@28216|Betaproteobacteria,4ABCX@80864|Comamonadaceae 28216|Betaproteobacteria V TIGRFAM type I secretion system ATPase - - - ko:K06147,ko:K11004,ko:K13409 ko02010,ko03070,ko04626,ko05133,map02010,map03070,map04626,map05133 M00325,M00339,M00575 - - ko00000,ko00001,ko00002,ko02000,ko02044 3.A.1.106,3.A.1.109,3.A.1.109.1,3.A.1.109.2,3.A.1.110,3.A.1.21 - - ABC_membrane,ABC_tran,Peptidase_C39 EH3_k127_3382129_1 1265502.KB905965_gene1356 6.826e-104 361.0 COG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,2VIAA@28216|Betaproteobacteria,4A9JV@80864|Comamonadaceae 28216|Betaproteobacteria M HlyD membrane-fusion protein of T1SS - - - ko:K02022,ko:K11003 ko03070,ko05133,map03070,map05133 M00325,M00575 - - ko00000,ko00001,ko00002,ko02000,ko02044 8.A.1.3.1,8.A.1.3.2 - - Biotin_lipoyl_2,HlyD,HlyD_3 EH3_k127_338357_2 257310.BB3815 1.799e-91 309.0 COG0477@1|root,COG2814@2|Bacteria,1QW9T@1224|Proteobacteria,2W1Q9@28216|Betaproteobacteria,3T5SY@506|Alcaligenaceae 28216|Betaproteobacteria EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_338357_3 420662.Mpe_A3459 2.074e-83 285.0 COG0692@1|root,COG0692@2|Bacteria,1MV80@1224|Proteobacteria,2VHN3@28216|Betaproteobacteria,1KKUC@119065|unclassified Burkholderiales 28216|Betaproteobacteria L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine ung - 3.2.2.27 ko:K03648 ko03410,ko05340,map03410,map05340 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG EH3_k127_338357_1 1454004.AW11_03276 1.447e-130 439.0 COG2989@1|root,COG2989@2|Bacteria,1MV14@1224|Proteobacteria,2VHVQ@28216|Betaproteobacteria 28216|Betaproteobacteria S ErfK YbiS YcfS YnhG family protein ycbB - - ko:K21470 - - - - ko00000,ko01002,ko01011 - - - PG_binding_1,YkuD EH3_k127_338357_5 1123367.C666_07710 1.056e-48 181.0 COG3108@1|root,COG3108@2|Bacteria,1MWW2@1224|Proteobacteria,2VRCS@28216|Betaproteobacteria,2KWV5@206389|Rhodocyclales 206389|Rhodocyclales S protein conserved in bacteria - - - - - - - - - - - - Peptidase_M15_2 EH3_k127_338357_4 365046.Rta_16490 6.765e-59 207.0 COG0589@1|root,COG0589@2|Bacteria,1RFEP@1224|Proteobacteria,2WEVW@28216|Betaproteobacteria,4AE9H@80864|Comamonadaceae 28216|Betaproteobacteria T Universal stress protein family - - - - - - - - - - - - Usp EH3_k127_338357_6 1279038.KB907338_gene889 3.264e-39 154.0 COG1335@1|root,COG1335@2|Bacteria,1MU5N@1224|Proteobacteria,2U9MT@28211|Alphaproteobacteria,2JSNG@204441|Rhodospirillales 204441|Rhodospirillales Q COG1335 Amidases related to nicotinamidase - - - - - - - - - - - - Isochorismatase EH3_k127_338357_0 522306.CAP2UW1_1984 3.727e-213 674.0 COG2368@1|root,COG2368@2|Bacteria,1PEQG@1224|Proteobacteria,2VKCH@28216|Betaproteobacteria 28216|Betaproteobacteria Q 4-hydroxyphenylacetate - - 1.14.14.9,4.2.1.120,5.3.3.3 ko:K00483,ko:K14534 ko00350,ko00650,ko00720,ko01100,ko01120,ko01200,ko01220,map00350,map00650,map00720,map01100,map01120,map01200,map01220 M00374,M00375 R02698,R03031,R03299,R10782 RC00046,RC01857,RC03277 ko00000,ko00001,ko00002,ko01000 - - - HpaB,HpaB_N EH3_k127_3383743_2 1095769.CAHF01000001_gene3495 5.167e-65 224.0 COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2VISA@28216|Betaproteobacteria,473PD@75682|Oxalobacteraceae 28216|Betaproteobacteria C Glycolate oxidase, iron-sulfur subunit glcF - - ko:K11473 ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130 - R00475 RC00042 ko00000,ko00001 - - - CCG,Fer4_7,Fer4_8 EH3_k127_3383743_0 76114.ebA4491 1.294e-131 441.0 COG0277@1|root,COG0277@2|Bacteria,1MVYV@1224|Proteobacteria,2VHUQ@28216|Betaproteobacteria,2KUSX@206389|Rhodocyclales 206389|Rhodocyclales C FAD binding glcE - - ko:K11472 ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130 - R00475 RC00042 ko00000,ko00001 - - - FAD-oxidase_C,FAD_binding_4 EH3_k127_3383743_1 85643.Tmz1t_1637 7.829e-124 400.0 COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2VH8M@28216|Betaproteobacteria,2KUI1@206389|Rhodocyclales 206389|Rhodocyclales C Glycolate oxidase subunit GlcD glcD - 1.1.3.15 ko:K00104 ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130 - R00475 RC00042 ko00000,ko00001,ko01000 - - - FAD-oxidase_C,FAD_binding_4 EH3_k127_3389697_8 1217718.ALOU01000002_gene4688 6.844e-38 152.0 COG1881@1|root,COG1881@2|Bacteria,1N0Y4@1224|Proteobacteria,2VJ4C@28216|Betaproteobacteria,1K14P@119060|Burkholderiaceae 28216|Betaproteobacteria S phospholipid-binding protein bbsI - - ko:K06910 - - - - ko00000 - - - PBP EH3_k127_3389697_3 29581.BW37_01313 2.963e-63 224.0 COG1490@1|root,COG1490@2|Bacteria,1RGTV@1224|Proteobacteria,2VR31@28216|Betaproteobacteria,474FN@75682|Oxalobacteraceae 28216|Betaproteobacteria J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality dtd - - ko:K07560 - - - - ko00000,ko01000,ko03016 - - - Tyr_Deacylase EH3_k127_3389697_0 93220.LV28_18465 2.05e-196 622.0 COG0162@1|root,COG0162@2|Bacteria,1MVUQ@1224|Proteobacteria,2VHF7@28216|Betaproteobacteria,1JZQB@119060|Burkholderiaceae 28216|Betaproteobacteria J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) tyrS - 6.1.1.1 ko:K01866 ko00970,map00970 M00359,M00360 R02918 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - S4,S4_2,tRNA-synt_1b EH3_k127_3389697_1 1156919.QWC_24075 1.452e-114 380.0 COG2377@1|root,COG2377@2|Bacteria,1MV4E@1224|Proteobacteria,2VHCE@28216|Betaproteobacteria,3T1E6@506|Alcaligenaceae 28216|Betaproteobacteria F Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling anmK - 2.7.1.170 ko:K09001 - - - - ko00000,ko01000 - - - AnmK EH3_k127_3389697_4 1175306.GWL_32180 7.846e-63 217.0 COG0316@1|root,COG0316@2|Bacteria,1RHCW@1224|Proteobacteria,2VR2M@28216|Betaproteobacteria,474AD@75682|Oxalobacteraceae 28216|Betaproteobacteria C Required for insertion of 4Fe-4S clusters erpA - - ko:K15724 - - - - ko00000 - - - Fe-S_biosyn EH3_k127_3389697_9 1005048.CFU_3964 5.578e-32 129.0 COG1664@1|root,COG1664@2|Bacteria,1MZN0@1224|Proteobacteria,2VTZQ@28216|Betaproteobacteria,474AK@75682|Oxalobacteraceae 28216|Betaproteobacteria M Integral membrane protein CcmA involved in cell shape determination ccmA - - - - - - - - - - - Bactofilin EH3_k127_3389697_7 204773.HEAR0243 2.725e-47 179.0 28IJP@1|root,2Z8KI@2|Bacteria,1R9DP@1224|Proteobacteria,2VTVJ@28216|Betaproteobacteria,478NV@75682|Oxalobacteraceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_3389697_5 1156919.QWC_24055 1.227e-61 215.0 COG0103@1|root,COG0103@2|Bacteria,1RD4A@1224|Proteobacteria,2VR5R@28216|Betaproteobacteria,3T3HS@506|Alcaligenaceae 28216|Betaproteobacteria J Belongs to the universal ribosomal protein uS9 family rpsI - - ko:K02996 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S9 EH3_k127_3389697_2 1005048.CFU_3968 7.957e-73 249.0 COG0102@1|root,COG0102@2|Bacteria,1RA11@1224|Proteobacteria,2VQ07@28216|Betaproteobacteria,47450@75682|Oxalobacteraceae 28216|Betaproteobacteria J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly rplM - - ko:K02871 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L13 EH3_k127_3389697_6 1031711.RSPO_c02903 3.132e-59 217.0 COG1765@1|root,COG1765@2|Bacteria,1RCZW@1224|Proteobacteria,2VR62@28216|Betaproteobacteria,1K70K@119060|Burkholderiaceae 28216|Betaproteobacteria O PFAM OsmC family protein yhfA - - ko:K07397 - - - - ko00000 - - - OsmC EH3_k127_3393497_1 1217718.ALOU01000009_gene1099 2.718e-112 370.0 COG2041@1|root,COG2041@2|Bacteria,1MX9E@1224|Proteobacteria,2VI1T@28216|Betaproteobacteria,1K0YT@119060|Burkholderiaceae 28216|Betaproteobacteria S Mo-co oxidoreductase dimerisation domain soxC - - ko:K17225 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00595 R10151 RC03151,RC03152 ko00000,ko00001,ko00002 - - - Mo-co_dimer,Oxidored_molyb EH3_k127_3393497_5 1366050.N234_19965 3.101e-38 146.0 COG0640@1|root,COG0640@2|Bacteria,1Q9DY@1224|Proteobacteria,2VVWF@28216|Betaproteobacteria,1K90M@119060|Burkholderiaceae 28216|Betaproteobacteria K Transcriptional regulator - - - - - - - - - - - - HTH_20,HTH_5 EH3_k127_3393497_0 1047013.AQSP01000098_gene2570 4.802e-153 512.0 COG4231@1|root,COG4231@2|Bacteria,2NP25@2323|unclassified Bacteria 2|Bacteria C Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates iorA - 1.2.7.8 ko:K00179,ko:K08941 - M00598 - - br01601,ko00000,ko00002,ko00194,ko01000 - - - POR_N,TPP_enzyme_C EH3_k127_3393497_4 742725.HMPREF9450_01546 2.055e-44 183.0 COG1014@1|root,COG1014@2|Bacteria,4NGN3@976|Bacteroidetes,2FP78@200643|Bacteroidia,22V9A@171550|Rikenellaceae 976|Bacteroidetes C Pyruvate ferredoxin/flavodoxin oxidoreductase iorB - 1.2.7.8 ko:K00180 - - - - br01601,ko00000,ko01000 - - - POR EH3_k127_3393497_3 402626.Rpic_1024 8.739e-104 361.0 COG1807@1|root,COG1807@2|Bacteria,1PUE3@1224|Proteobacteria,2VHPU@28216|Betaproteobacteria,1K1MM@119060|Burkholderiaceae 28216|Betaproteobacteria M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family arnT - - - - - - - - - - - - EH3_k127_3393497_2 395019.Bmul_1438 5.645e-105 355.0 COG0534@1|root,COG0534@2|Bacteria,1MUAM@1224|Proteobacteria,2VH2B@28216|Betaproteobacteria,1K00D@119060|Burkholderiaceae 28216|Betaproteobacteria V MATE efflux family protein - - - ko:K03327 - - - - ko00000,ko02000 2.A.66.1 - - MatE EH3_k127_3398004_1 1532557.JL37_21195 2.166e-71 243.0 COG0220@1|root,COG0220@2|Bacteria,1MUWJ@1224|Proteobacteria,2VJN2@28216|Betaproteobacteria,3T1QF@506|Alcaligenaceae 28216|Betaproteobacteria J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA trmB - 2.1.1.33 ko:K03439 - - - - ko00000,ko01000,ko03016 - - - Methyltransf_4 EH3_k127_3398004_2 1280946.HY29_11330 1.029e-15 86.0 2E61B@1|root,330QK@2|Bacteria,1N39M@1224|Proteobacteria,2UIVA@28211|Alphaproteobacteria,43YCR@69657|Hyphomonadaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - EH3_k127_3398004_0 983917.RGE_35030 5.57e-84 284.0 COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,2VHSA@28216|Betaproteobacteria,1KIVR@119065|unclassified Burkholderiales 28216|Betaproteobacteria V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin uppP - 3.6.1.27 ko:K06153 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - BacA EH3_k127_341801_2 113395.AXAI01000001_gene3033 4.104e-97 321.0 COG1126@1|root,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,2TQX2@28211|Alphaproteobacteria,3JRXW@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria E ATPases associated with a variety of cellular activities glnQ - 3.6.3.21 ko:K02028 - M00236 - - ko00000,ko00002,ko01000,ko02000 3.A.1.3 - - ABC_tran EH3_k127_341801_5 1248916.ANFY01000017_gene1348 5.025e-51 184.0 COG5470@1|root,COG5470@2|Bacteria,1MZRC@1224|Proteobacteria,2VGRQ@28211|Alphaproteobacteria,2KDC7@204457|Sphingomonadales 204457|Sphingomonadales S Domain of unknown function (DUF1330) - - - - - - - - - - - - - EH3_k127_341801_4 153948.NAL212_1306 2.298e-59 225.0 2DKYH@1|root,30WKQ@2|Bacteria,1RCXC@1224|Proteobacteria,2VR6P@28216|Betaproteobacteria,372XE@32003|Nitrosomonadales 28216|Betaproteobacteria S Protein of unknown function (DUF3485) - - - - - - - - - - - - DUF3485 EH3_k127_341801_3 292415.Tbd_1792 7.162e-77 269.0 COG1269@1|root,COG1269@2|Bacteria,1MXZG@1224|Proteobacteria,2VHWW@28216|Betaproteobacteria,1KSD2@119069|Hydrogenophilales 119069|Hydrogenophilales C Transmembrane exosortase (Exosortase_EpsH) - - - - - - - - - - - - Exosortase_EpsH EH3_k127_341801_6 1266925.JHVX01000005_gene2002 1.448e-42 175.0 COG0760@1|root,COG0760@2|Bacteria,1R4EF@1224|Proteobacteria,2VK6Z@28216|Betaproteobacteria,371WN@32003|Nitrosomonadales 28216|Betaproteobacteria O TIGRFAM peptidyl-prolyl cis-trans isomerase, EpsD family - - - - - - - - - - - - Rotamase_2,SurA_N_3 EH3_k127_341801_1 1198114.AciX9_1860 7.862e-109 361.0 2EXS2@1|root,33R1F@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - EH3_k127_341801_0 397945.Aave_0142 3.887e-173 551.0 COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2VKC7@28216|Betaproteobacteria,4ABMY@80864|Comamonadaceae 28216|Betaproteobacteria E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA tdcB - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - ACT,ACT_4,PALP EH3_k127_3423537_7 380394.Lferr_0210 9.374e-13 78.0 COG3439@1|root,COG3439@2|Bacteria,1RH9Z@1224|Proteobacteria,1T9P7@1236|Gammaproteobacteria,2NDUI@225057|Acidithiobacillales 225057|Acidithiobacillales S Domain of unknown function DUF302 - - - - - - - - - - - - DUF302 EH3_k127_3423537_3 1123393.KB891327_gene323 2.642e-62 234.0 COG3025@1|root,COG5607@1|root,COG3025@2|Bacteria,COG5607@2|Bacteria,1MY43@1224|Proteobacteria,2VM3G@28216|Betaproteobacteria,1KRR3@119069|Hydrogenophilales 119069|Hydrogenophilales S CHAD - - - - - - - - - - - - CHAD,CYTH EH3_k127_3423537_6 1192868.CAIU01000033_gene4184 2.12e-28 123.0 COG0607@1|root,COG0607@2|Bacteria,1RDYR@1224|Proteobacteria,2VFYC@28211|Alphaproteobacteria 28211|Alphaproteobacteria P Rhodanese Homology Domain - - - - - - - - - - - - Rhodanese EH3_k127_3423537_5 1123377.AUIV01000008_gene1360 1.285e-45 173.0 COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,1RX6M@1236|Gammaproteobacteria,1X74B@135614|Xanthomonadales 135614|Xanthomonadales T helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg EH3_k127_3423537_2 62928.azo3438 1.537e-88 321.0 COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2VIXT@28216|Betaproteobacteria,2KUH6@206389|Rhodocyclales 206389|Rhodocyclales T Histidine kinase - - - - - - - - - - - - DUF2222,HAMP,HATPase_c,HisKA,Response_reg,dCache_1 EH3_k127_3423537_4 204773.HEAR1583 3.056e-48 178.0 COG4454@1|root,COG4454@2|Bacteria,1R91G@1224|Proteobacteria,2VSDP@28216|Betaproteobacteria,474YT@75682|Oxalobacteraceae 28216|Betaproteobacteria P Copper binding proteins, plastocyanin/azurin family - - - - - - - - - - - - Copper-bind,Cupredoxin_1,CusF_Ec EH3_k127_3423537_1 522306.CAP2UW1_0148 3.227e-107 362.0 COG1538@1|root,COG1538@2|Bacteria,1PCPQ@1224|Proteobacteria,2VMAB@28216|Betaproteobacteria 28216|Betaproteobacteria MU PFAM Outer membrane efflux protein - - - - - - - - - - - - OEP EH3_k127_3423537_0 1304883.KI912532_gene2831 1.086e-131 436.0 COG0845@1|root,COG5569@1|root,COG0845@2|Bacteria,COG5569@2|Bacteria,1MVAS@1224|Proteobacteria,2VJXV@28216|Betaproteobacteria,2KVT7@206389|Rhodocyclales 206389|Rhodocyclales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K07798 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4,8.A.1 - - CusF_Ec,HlyD_D23 EH3_k127_3456182_4 420662.Mpe_A3008 5.867e-92 312.0 COG0855@1|root,COG0855@2|Bacteria,1MUM3@1224|Proteobacteria,2VHH8@28216|Betaproteobacteria,1KJGR@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) ppk - 2.7.4.1 ko:K00937 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PP_kinase,PP_kinase_C,PP_kinase_N EH3_k127_3456182_9 94624.Bpet0501 2.299e-44 170.0 COG2884@1|root,COG2884@2|Bacteria,1MVQ4@1224|Proteobacteria,2VINI@28216|Betaproteobacteria,3T2B7@506|Alcaligenaceae 28216|Betaproteobacteria D cell division ftsE - - ko:K09812 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - ABC_tran EH3_k127_3456182_13 546262.NEICINOT_04403 1.713e-12 78.0 COG2177@1|root,COG2177@2|Bacteria,1MU65@1224|Proteobacteria,2VNGX@28216|Betaproteobacteria,2KPD9@206351|Neisseriales 206351|Neisseriales D Part of the ABC transporter FtsEX involved in cellular division ftsX - - ko:K09811 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - FtsX EH3_k127_3456182_2 266264.Rmet_0272 7.094e-124 405.0 COG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,2VI91@28216|Betaproteobacteria,1K0Z3@119060|Burkholderiaceae 28216|Betaproteobacteria K RNA polymerase sigma factor RpoH rpoH - - ko:K03089 - - - - ko00000,ko03021 - - - Sigma70_r1_2,Sigma70_r2,Sigma70_r4 EH3_k127_3456182_14 1003200.AXXA_05513 5.335e-06 57.0 28M0N@1|root,2ZAFN@2|Bacteria,1NH41@1224|Proteobacteria,2VNK1@28216|Betaproteobacteria,3T5FX@506|Alcaligenaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_3456182_5 375286.mma_3143 1.065e-71 253.0 COG1999@1|root,COG1999@2|Bacteria,1RHJ8@1224|Proteobacteria,2VR3M@28216|Betaproteobacteria,473BA@75682|Oxalobacteraceae 28216|Betaproteobacteria S Involved in biogenesis of respiratory and photosynthetic systems senC - - ko:K07152 - - - - ko00000,ko03029 - - - SCO1-SenC EH3_k127_3456182_1 1095769.CAHF01000014_gene2976 2.426e-132 429.0 COG0109@1|root,COG0109@2|Bacteria,1MW3S@1224|Proteobacteria,2VHZU@28216|Betaproteobacteria,473W4@75682|Oxalobacteraceae 28216|Betaproteobacteria O Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group ctaB - 2.5.1.141 ko:K02257 ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714 M00154 R07411 RC01786 ko00000,ko00001,ko00002,ko01000,ko01006,ko03029 - - - UbiA EH3_k127_3456182_0 264198.Reut_A0322 1.311e-132 432.0 COG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,2VJ3C@28216|Betaproteobacteria,1K29Y@119060|Burkholderiaceae 28216|Betaproteobacteria O cytochrome oxidase assembly ctaA - - ko:K02259 ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714 M00154 R07412 RC00769 ko00000,ko00001,ko00002,ko03029 3.D.4.4 - - COX15-CtaA EH3_k127_3456182_7 204773.HEAR2912 4.584e-60 214.0 COG1999@1|root,COG1999@2|Bacteria,1RHK3@1224|Proteobacteria,2VRBY@28216|Betaproteobacteria,473TQ@75682|Oxalobacteraceae 28216|Betaproteobacteria S signal sequence binding sco1 - - - - - - - - - - - - EH3_k127_3456182_10 420662.Mpe_A3176 9.477e-44 169.0 COG3346@1|root,COG3346@2|Bacteria,1MZUH@1224|Proteobacteria,2VSAZ@28216|Betaproteobacteria,1KKUG@119065|unclassified Burkholderiales 28216|Betaproteobacteria S SURF1-like protein surf1 - - ko:K14998 - - - - ko00000,ko03029 3.D.4.8 - - SURF1 EH3_k127_3456182_12 1216976.AX27061_0233 6.655e-15 76.0 2E53D@1|root,32ZWH@2|Bacteria,1N979@1224|Proteobacteria,2VVRY@28216|Betaproteobacteria,3T4SE@506|Alcaligenaceae 28216|Betaproteobacteria S Protein of unknown function (DUF2909) - - - - - - - - - - - - DUF2909 EH3_k127_3456182_3 1175306.GWL_35750 4.779e-120 392.0 COG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,2VJAP@28216|Betaproteobacteria,4735S@75682|Oxalobacteraceae 28216|Betaproteobacteria C Heme copper-type cytochrome quinol oxidase, subunit 3 coxC - 1.9.3.1 ko:K02276 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.4,3.D.4.6 - - COX3 EH3_k127_3456182_11 757424.Hsero_4158 1.971e-16 82.0 2CDU3@1|root,33AS4@2|Bacteria,1NGWQ@1224|Proteobacteria,2VXNC@28216|Betaproteobacteria,4754U@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF2970) - - - - - - - - - - - - DUF2970 EH3_k127_3456182_6 1175306.GWL_35770 2.892e-68 238.0 COG3175@1|root,COG3175@2|Bacteria,1RDTU@1224|Proteobacteria,2VHRQ@28216|Betaproteobacteria,4728X@75682|Oxalobacteraceae 28216|Betaproteobacteria O cytochrome C oxidase ctaG - - ko:K02258 ko00190,ko01100,ko04714,map00190,map01100,map04714 M00154 - - ko00000,ko00001,ko00002,ko03029 3.D.4.8 - - CtaG_Cox11 EH3_k127_3456182_8 1392838.AWNM01000009_gene2778 2.904e-58 204.0 COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,2VHGU@28216|Betaproteobacteria,3T1DV@506|Alcaligenaceae 28216|Betaproteobacteria C Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B ctaD - 1.9.3.1 ko:K02274 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6 - - COX1 EH3_k127_3462178_2 159087.Daro_1819 3.511e-38 147.0 COG0243@1|root,COG0243@2|Bacteria,1MWPS@1224|Proteobacteria,2VHYH@28216|Betaproteobacteria,2KYCY@206389|Rhodocyclales 206389|Rhodocyclales C Molybdopterin oxidoreductase Fe4S4 domain - - - - - - - - - - - - Molybdop_Fe4S4,Molybdopterin EH3_k127_3462178_1 1031711.RSPO_c03226 2.926e-100 334.0 COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,2VJ7N@28216|Betaproteobacteria,1K34X@119060|Burkholderiaceae 28216|Betaproteobacteria S Polyphosphate kinase 2 (PPK2) - - 2.7.4.1 ko:K00937 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PPK2 EH3_k127_3462178_5 864073.HFRIS_001779 4.018e-18 96.0 2DN7F@1|root,32VYA@2|Bacteria,1QUZI@1224|Proteobacteria,2VUAZ@28216|Betaproteobacteria,4740E@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF3108) - - - - - - - - - - - - DUF3108 EH3_k127_3462178_3 1095769.CAHF01000014_gene2996 1.539e-25 119.0 2DN7F@1|root,32VYA@2|Bacteria,1QUZI@1224|Proteobacteria,2VUAZ@28216|Betaproteobacteria,4740E@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF3108) - - - - - - - - - - - - DUF3108 EH3_k127_3462178_0 266264.Rmet_0081 4.472e-165 524.0 COG0179@1|root,COG0179@2|Bacteria,1MV0V@1224|Proteobacteria,2VGZX@28216|Betaproteobacteria,1K0T5@119060|Burkholderiaceae 28216|Betaproteobacteria Q fumarylacetoacetate (FAA) hydrolase mhpD2 - 3.7.1.2 ko:K16171 ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120 M00044 R01364 RC00326,RC00446 ko00000,ko00001,ko00002,ko01000 - - - FAA_hydrolase EH3_k127_3462178_4 1349767.GJA_4791 1.373e-18 93.0 2EDY7@1|root,30V4M@2|Bacteria,1RGIS@1224|Proteobacteria,2VQT2@28216|Betaproteobacteria,474UN@75682|Oxalobacteraceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_3487050_2 1392838.AWNM01000036_gene766 2.327e-07 52.0 COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2VQ9M@28216|Betaproteobacteria,3T6X3@506|Alcaligenaceae 28216|Betaproteobacteria C [2Fe-2S] binding domain iorA - 1.3.99.16 ko:K07302 - - - - ko00000,ko01000 - - - Fer2,Fer2_2 EH3_k127_3487050_0 748247.AZKH_3902 8e-312 971.0 COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2VHB9@28216|Betaproteobacteria,2KVA6@206389|Rhodocyclales 206389|Rhodocyclales C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - 1.3.99.16 ko:K07303 - - - - ko00000,ko01000 - - - Ald_Xan_dh_C2 EH3_k127_3487050_1 1123393.KB891332_gene2833 1.61e-107 361.0 COG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,2VHIK@28216|Betaproteobacteria,1KRE9@119069|Hydrogenophilales 119069|Hydrogenophilales O XdhC and CoxI family - - - - - - - - - - - - XdhC_C,XdhC_CoxI EH3_k127_3488265_1 556269.ACDQ01000002_gene1013 1.458e-221 691.0 COG0441@1|root,COG0441@2|Bacteria,1MUP2@1224|Proteobacteria,2VHFD@28216|Betaproteobacteria,472DF@75682|Oxalobacteraceae 28216|Betaproteobacteria J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) thrS - 6.1.1.3 ko:K01868 ko00970,map00970 M00359,M00360 R03663 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD EH3_k127_3488265_4 859657.RPSI07_1666 1.107e-75 258.0 COG0290@1|root,COG0290@2|Bacteria,1RDD2@1224|Proteobacteria,2VQ19@28216|Betaproteobacteria,1K20G@119060|Burkholderiaceae 28216|Betaproteobacteria J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins infC - - ko:K02520 - - - - ko00000,ko03012,ko03029 - - - IF3_C,IF3_N EH3_k127_3488265_8 795666.MW7_1761 6.495e-25 104.0 COG0291@1|root,COG0291@2|Bacteria,1N6V4@1224|Proteobacteria,2VVS9@28216|Betaproteobacteria,1K9H0@119060|Burkholderiaceae 28216|Betaproteobacteria J Belongs to the bacterial ribosomal protein bL35 family rpmI - - ko:K02916 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L35p EH3_k127_3488265_5 85643.Tmz1t_3022 3.117e-52 186.0 COG0292@1|root,COG0292@2|Bacteria,1RGU2@1224|Proteobacteria,2VRWF@28216|Betaproteobacteria,2KWC3@206389|Rhodocyclales 206389|Rhodocyclales J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit rplT - - ko:K02887 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L20 EH3_k127_3488265_2 1437824.BN940_09011 2.873e-171 542.0 COG0016@1|root,COG0016@2|Bacteria,1MVD7@1224|Proteobacteria,2VIM9@28216|Betaproteobacteria,3T1N5@506|Alcaligenaceae 28216|Betaproteobacteria J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily pheS - 6.1.1.20 ko:K01889 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Phe_tRNA-synt_N,tRNA-synt_2d EH3_k127_3488265_0 1175306.GWL_14100 1.955e-314 982.0 COG0072@1|root,COG0073@1|root,COG0072@2|Bacteria,COG0073@2|Bacteria,1MWKS@1224|Proteobacteria,2VHR1@28216|Betaproteobacteria,47274@75682|Oxalobacteraceae 28216|Betaproteobacteria J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily pheT - 6.1.1.20 ko:K01890 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - B3_4,B5,FDX-ACB,tRNA_bind EH3_k127_3488265_6 748247.AZKH_3532 3.279e-45 166.0 COG0776@1|root,COG0776@2|Bacteria,1RH5Z@1224|Proteobacteria,2VT12@28216|Betaproteobacteria,2KWPS@206389|Rhodocyclales 206389|Rhodocyclales K This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control ihfA - - ko:K04764 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding EH3_k127_3488265_7 375286.mma_1494 1.607e-43 168.0 COG0789@1|root,COG0789@2|Bacteria,1RGYB@1224|Proteobacteria,2VSDF@28216|Betaproteobacteria,474HH@75682|Oxalobacteraceae 28216|Betaproteobacteria K helix_turn_helix, mercury resistance ycgE - - - - - - - - - - - MerR_1 EH3_k127_3488265_9 59538.XP_005979423.1 1.872e-06 49.0 COG0277@1|root,KOG1231@2759|Eukaryota,38FXH@33154|Opisthokonta,3BEEV@33208|Metazoa,3CRTP@33213|Bilateria,4801S@7711|Chordata,492UT@7742|Vertebrata,3JDRF@40674|Mammalia,4J43Y@91561|Cetartiodactyla 33208|Metazoa C dehydrogenase - - - - - - - - - - - - FAD-oxidase_C,FAD_binding_4,Fer4_8 EH3_k127_3488265_3 123899.JPQP01000017_gene2128 1.289e-113 372.0 COG0496@1|root,COG0496@2|Bacteria,1MVHE@1224|Proteobacteria,2VIND@28216|Betaproteobacteria,3T2KU@506|Alcaligenaceae 28216|Betaproteobacteria S Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates surE - 3.1.3.5 ko:K03787 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - SurE EH3_k127_3519664_2 1123072.AUDH01000005_gene1621 6.625e-128 425.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TQQH@28211|Alphaproteobacteria,2JPYV@204441|Rhodospirillales 204441|Rhodospirillales E Bacterial extracellular solute-binding proteins, family 5 Middle - - - - - - - - - - - - SBP_bac_5 EH3_k127_3519664_0 1218075.BAYA01000018_gene4746 1.305e-147 472.0 COG1893@1|root,COG1893@2|Bacteria,1P0AW@1224|Proteobacteria,2VKA6@28216|Betaproteobacteria,1KFDC@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - 1.1.1.169 ko:K00077 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R02472 RC00726 ko00000,ko00001,ko00002,ko01000 - - - ApbA,ApbA_C EH3_k127_3519664_1 365046.Rta_37590 5.785e-130 417.0 COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2WFJM@28216|Betaproteobacteria,4AD19@80864|Comamonadaceae 28216|Betaproteobacteria E Glutamine synthetase, catalytic domain - - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C EH3_k127_3545179_2 1304883.KI912532_gene2096 6.344e-67 228.0 COG0348@1|root,COG0348@2|Bacteria,1MWR5@1224|Proteobacteria,2VJGG@28216|Betaproteobacteria,2KUBY@206389|Rhodocyclales 206389|Rhodocyclales C 4Fe-4S binding domain - - - ko:K02574 - - - - ko00000 - - - Fer4,Fer4_5 EH3_k127_3545179_0 159087.Daro_1564 1.448e-123 402.0 COG1131@1|root,COG1131@2|Bacteria,1MXHE@1224|Proteobacteria,2VN8A@28216|Betaproteobacteria,2KVJR@206389|Rhodocyclales 206389|Rhodocyclales V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran EH3_k127_3545179_3 1163617.SCD_n00357 1.7e-37 160.0 COG4314@1|root,COG4314@2|Bacteria,1N3G0@1224|Proteobacteria,2VV5H@28216|Betaproteobacteria 28216|Betaproteobacteria C NosL - - - - - - - - - - - - NosL EH3_k127_3545179_1 1163617.SCD_n00358 5.723e-90 307.0 COG1277@1|root,COG1277@2|Bacteria,1MWUZ@1224|Proteobacteria,2VJDE@28216|Betaproteobacteria 28216|Betaproteobacteria S ABC-type transport system involved in multi-copper enzyme maturation permease component nosY - - ko:K01992,ko:K19341 ko02010,map02010 M00254,M00762 - - ko00000,ko00001,ko00002,ko02000 3.A.1,3.A.1.132.2 - - ABC2_membrane_2 EH3_k127_3561937_3 697282.Mettu_0390 4.794e-55 198.0 COG2234@1|root,COG2234@2|Bacteria,1MXZS@1224|Proteobacteria,1S0QR@1236|Gammaproteobacteria,1XFU4@135618|Methylococcales 135618|Methylococcales S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 EH3_k127_3561937_2 1100720.ALKN01000030_gene1161 2.299e-55 200.0 COG1917@1|root,COG1917@2|Bacteria,1NNBT@1224|Proteobacteria,2VWRN@28216|Betaproteobacteria,4AJDV@80864|Comamonadaceae 28216|Betaproteobacteria S Cupin 2, conserved barrel domain protein - - - - - - - - - - - - - EH3_k127_3561937_0 1123504.JQKD01000002_gene3681 5e-147 477.0 COG0683@1|root,COG0683@2|Bacteria,1MWR8@1224|Proteobacteria,2VHH6@28216|Betaproteobacteria,4ACGH@80864|Comamonadaceae 28216|Betaproteobacteria E Extracellular ligand-binding receptor - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 EH3_k127_3561937_1 1223521.BBJX01000006_gene1775 8.783e-85 283.0 COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2VI0U@28216|Betaproteobacteria,4A9UR@80864|Comamonadaceae 28216|Betaproteobacteria I AMP-dependent synthetase and ligase - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding EH3_k127_3572958_0 76114.ebA6678 8.92e-123 398.0 COG1199@1|root,COG1199@2|Bacteria,1MVCU@1224|Proteobacteria,2VH0V@28216|Betaproteobacteria,2KV34@206389|Rhodocyclales 206389|Rhodocyclales KL helicase dinG - 3.6.4.12 ko:K03722 - - - - ko00000,ko01000,ko03400 - - - Helicase_C_2 EH3_k127_3572958_1 76114.ebA6677 1.02e-118 391.0 COG2308@1|root,COG2308@2|Bacteria,1P9A0@1224|Proteobacteria,2VISX@28216|Betaproteobacteria,2KU66@206389|Rhodocyclales 206389|Rhodocyclales S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - - EH3_k127_3572958_2 1304883.KI912532_gene2942 2.072e-26 111.0 COG1763@1|root,COG1763@2|Bacteria,1RD3Q@1224|Proteobacteria,2VSIP@28216|Betaproteobacteria,2KWDE@206389|Rhodocyclales 206389|Rhodocyclales H molybdopterin-guanine dinucleotide biosynthesis protein - - - ko:K03753 - - - - ko00000 - - - MobB EH3_k127_3578794_0 1392838.AWNM01000089_gene3792 5.666e-129 428.0 COG0750@1|root,COG0750@2|Bacteria,1MU91@1224|Proteobacteria,2VHBW@28216|Betaproteobacteria,3T24I@506|Alcaligenaceae 28216|Betaproteobacteria M Zinc metalloprotease rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 EH3_k127_3578794_1 743721.Psesu_0901 1.914e-124 417.0 COG0743@1|root,COG0743@2|Bacteria,1MU4G@1224|Proteobacteria,1RNNW@1236|Gammaproteobacteria,1X4I6@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) dxr GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 ko:K00099 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05688 RC01452 ko00000,ko00001,ko00002,ko01000 - - - DXPR_C,DXP_redisom_C,DXP_reductoisom EH3_k127_3578794_7 1121116.KB894767_gene2210 2.321e-45 177.0 COG0575@1|root,COG0575@2|Bacteria,1MWSV@1224|Proteobacteria,2VMM0@28216|Betaproteobacteria,4AAB8@80864|Comamonadaceae 28216|Betaproteobacteria I Belongs to the CDS family cdsA - 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_1 EH3_k127_3578794_4 123899.JPQP01000017_gene2391 2.576e-97 324.0 COG0020@1|root,COG0020@2|Bacteria,1MVP1@1224|Proteobacteria,2VH2E@28216|Betaproteobacteria,3T293@506|Alcaligenaceae 28216|Betaproteobacteria H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids uppS - 2.5.1.31 ko:K00806 ko00900,ko01110,map00900,map01110 - R06447 RC00279,RC02839 ko00000,ko00001,ko01000,ko01006 - - - Prenyltransf EH3_k127_3578794_5 388051.AUFE01000007_gene1451 1.498e-81 276.0 COG0233@1|root,COG0233@2|Bacteria,1N66T@1224|Proteobacteria,2VIUA@28216|Betaproteobacteria,1JZWS@119060|Burkholderiaceae 28216|Betaproteobacteria J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another frr - - ko:K02838 - - - - ko00000,ko03012 - - - RRF EH3_k127_3578794_3 1144342.PMI40_03589 6.97e-122 394.0 COG0528@1|root,COG0528@2|Bacteria,1MV3N@1224|Proteobacteria,2VH8A@28216|Betaproteobacteria,473A3@75682|Oxalobacteraceae 28216|Betaproteobacteria F Catalyzes the reversible phosphorylation of UMP to UDP pyrH - 2.7.4.22 ko:K09903 ko00240,ko01100,map00240,map01100 - R00158 RC00002 ko00000,ko00001,ko01000 - - - AA_kinase EH3_k127_3578794_2 1000565.METUNv1_01299 2.601e-124 408.0 COG0264@1|root,COG0264@2|Bacteria,1MUS2@1224|Proteobacteria,2VHSG@28216|Betaproteobacteria,2KU95@206389|Rhodocyclales 206389|Rhodocyclales J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome tsf - - ko:K02357 - - - - ko00000,ko03012,ko03029 - - - EF_TS EH3_k127_3578794_6 76114.ebA5986 1.458e-52 187.0 COG0052@1|root,COG0052@2|Bacteria,1MU33@1224|Proteobacteria,2VI8V@28216|Betaproteobacteria,2KUV5@206389|Rhodocyclales 206389|Rhodocyclales J Belongs to the universal ribosomal protein uS2 family rpsB - - ko:K02967 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S2 EH3_k127_3603667_1 1219031.BBJR01000054_gene2183 8.246e-35 143.0 COG3419@1|root,COG3419@2|Bacteria,1NUAV@1224|Proteobacteria,2VJEX@28216|Betaproteobacteria,4AANY@80864|Comamonadaceae 28216|Betaproteobacteria NU Neisseria PilC beta-propeller domain pilY1 - - ko:K02674 - - - - ko00000,ko02035,ko02044 - - - Neisseria_PilC EH3_k127_3603667_0 987059.RBXJA2T_19034 1.921e-80 282.0 COG4398@1|root,COG4398@2|Bacteria,1MUX9@1224|Proteobacteria,2VIY7@28216|Betaproteobacteria,1KJ2J@119065|unclassified Burkholderiales 28216|Betaproteobacteria S FIST_C - - - - - - - - - - - - FIST,FIST_C EH3_k127_3603667_2 398527.Bphyt_0485 1.899e-24 112.0 2EDY7@1|root,337T3@2|Bacteria,1RKSZ@1224|Proteobacteria,2VWTA@28216|Betaproteobacteria,1KFP2@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_3603667_3 1031711.RSPO_c03104 1.312e-10 62.0 COG0179@1|root,COG0179@2|Bacteria,1MV0V@1224|Proteobacteria,2VGZX@28216|Betaproteobacteria,1K0T5@119060|Burkholderiaceae 28216|Betaproteobacteria Q fumarylacetoacetate (FAA) hydrolase mhpD2 - 3.7.1.2 ko:K16171 ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120 M00044 R01364 RC00326,RC00446 ko00000,ko00001,ko00002,ko01000 - - - FAA_hydrolase EH3_k127_3626261_0 1158292.JPOE01000002_gene2978 4.718e-267 834.0 COG0514@1|root,COG0514@2|Bacteria,1MVGG@1224|Proteobacteria,2VH8W@28216|Betaproteobacteria,1KJAS@119065|unclassified Burkholderiales 28216|Betaproteobacteria L ATP-dependent DNA helicase RecQ recQ - 3.6.4.12 ko:K03654 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind EH3_k127_3626261_1 987059.RBXJA2T_02070 1.152e-14 74.0 COG4103@1|root,COG4103@2|Bacteria,1N6YZ@1224|Proteobacteria,2VU5M@28216|Betaproteobacteria 28216|Betaproteobacteria S Tellurite resistance protein TerB - - - - - - - - - - - - TerB EH3_k127_362974_4 1500894.JQNN01000001_gene573 1.016e-11 68.0 COG1075@1|root,COG1075@2|Bacteria,1N3FV@1224|Proteobacteria,2WFKG@28216|Betaproteobacteria,4747N@75682|Oxalobacteraceae 28216|Betaproteobacteria S PGAP1-like protein - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6,Hydrolase_4,PGAP1 EH3_k127_362974_2 1175306.GWL_12510 8.488e-108 364.0 COG2220@1|root,COG2220@2|Bacteria,1MV20@1224|Proteobacteria,2VKI0@28216|Betaproteobacteria,4742I@75682|Oxalobacteraceae 28216|Betaproteobacteria S Beta-lactamase superfamily domain - - - - - - - - - - - - Lactamase_B_2 EH3_k127_362974_0 1095769.CAHF01000013_gene3170 2.091e-320 998.0 COG0188@1|root,COG0188@2|Bacteria,1MURI@1224|Proteobacteria,2VH7P@28216|Betaproteobacteria,472XJ@75682|Oxalobacteraceae 28216|Betaproteobacteria L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule parC - - ko:K02621 - - - - ko00000,ko01000,ko02048,ko03032,ko03036 - - - DNA_gyraseA_C,DNA_topoisoIV EH3_k127_362974_1 1095769.CAHF01000011_gene2568 3.279e-134 468.0 COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2VH3V@28216|Betaproteobacteria 28216|Betaproteobacteria T Diguanylate cyclase - - - - - - - - - - - - CHASE,EAL,GGDEF,PAS,PAS_3 EH3_k127_362974_3 1071679.BG57_17625 1.553e-45 169.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2VHSB@28216|Betaproteobacteria,1K0NH@119060|Burkholderiaceae 28216|Betaproteobacteria T nitrogen regulation protein ntrC GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - ko:K07712 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat EH3_k127_3642666_1 1268622.AVS7_03722 3.253e-09 59.0 COG2887@1|root,COG2887@2|Bacteria,1MY2G@1224|Proteobacteria,2VJF3@28216|Betaproteobacteria,4AB66@80864|Comamonadaceae 28216|Betaproteobacteria L PD-(D/E)XK nuclease superfamily addB - 3.6.4.12 ko:K16899 - - - - ko00000,ko01000,ko03400 - - - PDDEXK_1 EH3_k127_3642666_0 267608.RSc1190 3.995e-137 461.0 COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2VI92@28216|Betaproteobacteria,1K1P9@119060|Burkholderiaceae 28216|Betaproteobacteria L A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA recB - 3.1.11.5,3.6.4.12 ko:K03582,ko:K16898 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C EH3_k127_366243_0 398525.KB900701_gene6702 0.0 1247.0 COG3119@1|root,COG3119@2|Bacteria,1MV92@1224|Proteobacteria,2TTXG@28211|Alphaproteobacteria,3JVJZ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria P Sulfatase - - 3.1.6.1 ko:K01130 ko00140,ko00600,map00140,map00600 - R03980,R04856 RC00128,RC00231 ko00000,ko00001,ko01000 - - - Sulfatase EH3_k127_366243_3 522306.CAP2UW1_1267 9.999e-40 151.0 2EBP0@1|root,335P6@2|Bacteria,1N33Y@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - EH3_k127_366243_2 1366050.N234_34995 5.769e-41 158.0 2E9FY@1|root,333P7@2|Bacteria,1N8S6@1224|Proteobacteria,2VWAN@28216|Betaproteobacteria,1K4AW@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_366243_1 1454004.AW11_02394 1.604e-219 690.0 COG1752@1|root,COG1752@2|Bacteria,1MUI6@1224|Proteobacteria,2VHA3@28216|Betaproteobacteria 28216|Betaproteobacteria S Phospholipase, patatin family - - - ko:K07001 - - - - ko00000 - - - Patatin EH3_k127_3694433_3 543728.Vapar_1219 1.035e-27 112.0 COG3616@1|root,COG3616@2|Bacteria,1MVQE@1224|Proteobacteria,2VJ3G@28216|Betaproteobacteria,4AD1Y@80864|Comamonadaceae 28216|Betaproteobacteria E Putative serine dehydratase domain dsd - 4.3.1.18 ko:K01753 ko00260,map00260 - R00221 RC02600 ko00000,ko00001,ko01000 - - - Ala_racemase_N,D-ser_dehydrat EH3_k127_3694433_0 338969.Rfer_2479 6.524e-269 840.0 COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2VMJK@28216|Betaproteobacteria,4AG8M@80864|Comamonadaceae 28216|Betaproteobacteria I AMP-binding enzyme - - - - - - - - - - - - AMP-binding EH3_k127_3694433_4 1504672.669787468 1.287e-24 119.0 COG2124@1|root,COG2124@2|Bacteria 2|Bacteria Q cytochrome p450 - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0010333,GO:0010334,GO:0016829,GO:0016835,GO:0016838,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0044237,GO:0044249,GO:0046483,GO:0050467,GO:0071704,GO:1901334,GO:1901336,GO:1901360,GO:1901362,GO:1901576 4.2.3.7,4.2.3.90,4.2.3.96 ko:K12250,ko:K18109,ko:K18110 ko00909,ko01130,map00909,map01130 M00819 R02305,R09890,R09896 RC00689,RC02696,RC02703 ko00000,ko00001,ko00002,ko01000 - - - Terpene_synth_C EH3_k127_3694433_1 1504672.669787467 3.255e-176 566.0 COG2124@1|root,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,2WGHK@28216|Betaproteobacteria,4AF4Y@80864|Comamonadaceae 28216|Betaproteobacteria C PFAM Cytochrome P450 - - 1.14.14.1,1.6.2.4 ko:K14338 ko00071,ko00380,ko00627,ko01120,map00071,map00380,map00627,map01120 - R03629,R04121,R05259 RC00046,RC01311 ko00000,ko00001,ko00199,ko01000 - - - FAD_binding_1,Flavodoxin_1,NAD_binding_1,p450 EH3_k127_3694433_2 1038859.AXAU01000002_gene283 1.077e-58 212.0 COG2114@1|root,COG2267@1|root,COG2114@2|Bacteria,COG2267@2|Bacteria,1NIJG@1224|Proteobacteria,2U09P@28211|Alphaproteobacteria,3JTK8@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria IT Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1,BTAD,Guanylate_cyc,Hydrolase_4,Trans_reg_C EH3_k127_3721012_1 556268.OFAG_02055 4.024e-48 174.0 COG0691@1|root,COG0691@2|Bacteria,1RDFP@1224|Proteobacteria,2VRG9@28216|Betaproteobacteria,47429@75682|Oxalobacteraceae 28216|Betaproteobacteria J the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA smpB - - ko:K03664 - - - - ko00000 - - - SmpB EH3_k127_3721012_4 296591.Bpro_4148 2.961e-14 74.0 2DNR5@1|root,32YQH@2|Bacteria,1NBXJ@1224|Proteobacteria,2VW7K@28216|Betaproteobacteria,4AIUC@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_3721012_0 296591.Bpro_4149 0.0 1126.0 COG0591@1|root,COG0642@1|root,COG0591@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2VKRS@28216|Betaproteobacteria,4AAXQ@80864|Comamonadaceae 28216|Betaproteobacteria T His Kinase A (phospho-acceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,PAS_7,Response_reg EH3_k127_3721012_2 1121035.AUCH01000013_gene3142 1.323e-41 156.0 COG0745@1|root,COG0745@2|Bacteria,1RHCU@1224|Proteobacteria,2VT7U@28216|Betaproteobacteria,2KWBT@206389|Rhodocyclales 206389|Rhodocyclales T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg EH3_k127_3721012_3 1121918.ARWE01000001_gene1043 3.742e-29 127.0 COG2176@1|root,COG2176@2|Bacteria,1QUVW@1224|Proteobacteria,43AX1@68525|delta/epsilon subdivisions,2X5KH@28221|Deltaproteobacteria 28221|Deltaproteobacteria L EXOIII - - - - - - - - - - - - RNase_T EH3_k127_3778061_0 522306.CAP2UW1_1635 3.886e-138 454.0 COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2VM08@28216|Betaproteobacteria,1KQ46@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria C Alcohol dehydrogenase GroES-like domain adh - 1.1.1.1,1.1.1.258 ko:K12957,ko:K13953,ko:K19961 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00930,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00930,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04880,R05233,R05234,R05283,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N EH3_k127_3778061_1 497965.Cyan7822_5216 1.754e-53 190.0 COG3651@1|root,COG3651@2|Bacteria,1G6ND@1117|Cyanobacteria,3KHX0@43988|Cyanothece 1117|Cyanobacteria S Uncharacterized protein conserved in bacteria (DUF2237) - - - ko:K09966 - - - - ko00000 - - - DUF2237 EH3_k127_3778061_4 1123393.KB891330_gene850 1.059e-17 94.0 COG3218@1|root,COG3218@2|Bacteria,1PXB6@1224|Proteobacteria,2WCSY@28216|Betaproteobacteria,1KSK8@119069|Hydrogenophilales 119069|Hydrogenophilales S ABC-type transport auxiliary lipoprotein component - - - - - - - - - - - - ABC_trans_aux EH3_k127_3778061_2 1123393.KB891330_gene851 4.332e-50 192.0 COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,2VW39@28216|Betaproteobacteria,1KS2K@119069|Hydrogenophilales 119069|Hydrogenophilales Q MlaD protein - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD EH3_k127_3778061_3 1123393.KB891330_gene852 4.388e-25 106.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2VJK6@28216|Betaproteobacteria,1KRJG@119069|Hydrogenophilales 119069|Hydrogenophilales Q ABC transporter - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran EH3_k127_3829129_2 1166018.FAES_2103 1.661e-30 130.0 COG0604@1|root,COG0604@2|Bacteria,4NJ2T@976|Bacteroidetes,47PK7@768503|Cytophagia 976|Bacteroidetes C Zinc-binding dehydrogenase - - - - - - - - - - - - ADH_N,ADH_zinc_N_2 EH3_k127_3829129_0 1198452.Jab_2c30860 1.724e-220 688.0 COG1960@1|root,COG1960@2|Bacteria,1MUK0@1224|Proteobacteria,2VHDV@28216|Betaproteobacteria,4733G@75682|Oxalobacteraceae 28216|Betaproteobacteria I Acyl-CoA dehydrogenase, middle domain gcdH - 1.3.8.6 ko:K00252 ko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130 M00032 R02487,R02488,R10074 RC00052,RC00156 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N EH3_k127_3829129_1 1265502.KB905932_gene1907 1.305e-92 313.0 COG0265@1|root,COG0265@2|Bacteria,1QWA4@1224|Proteobacteria,2VK6X@28216|Betaproteobacteria,4A9X2@80864|Comamonadaceae 28216|Betaproteobacteria O peptidase S1 and S6, chymotrypsin Hap - - - - - - - - - - - - Trypsin_2 EH3_k127_3849321_1 232721.Ajs_3386 1.912e-142 459.0 COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,2VHRS@28216|Betaproteobacteria,4AB2U@80864|Comamonadaceae 28216|Betaproteobacteria I PFAM fatty acid desaturase - - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - DDE_Tnp_ISL3,FA_desaturase EH3_k127_3849321_0 742821.HMPREF9464_01481 1.451e-153 511.0 COG0144@1|root,COG0144@2|Bacteria,1MV2Q@1224|Proteobacteria,2VI1D@28216|Betaproteobacteria,4PQER@995019|Sutterellaceae 28216|Betaproteobacteria J Pfam:Nol1_Nop2_Fmu rsmB_2 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 ko:K03500 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,Methyltr_RsmF_N EH3_k127_3849321_4 522306.CAP2UW1_2809 2.097e-72 250.0 COG0299@1|root,COG0299@2|Bacteria,1MWN1@1224|Proteobacteria,2VJG8@28216|Betaproteobacteria,1KPYF@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate purN - 2.1.2.2 ko:K11175 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - Formyl_trans_N EH3_k127_3849321_3 1366050.N234_17375 1.477e-114 389.0 COG0196@1|root,COG0196@2|Bacteria,1MV9I@1224|Proteobacteria,2VHIP@28216|Betaproteobacteria,1JZTJ@119060|Burkholderiaceae 28216|Betaproteobacteria H Belongs to the ribF family ribF - 2.7.1.26,2.7.7.2 ko:K11753 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00161,R00549 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - FAD_syn,Flavokinase EH3_k127_3849321_2 626418.bglu_1g28770 4.181e-125 406.0 COG0060@1|root,COG0060@2|Bacteria,1MVBQ@1224|Proteobacteria,2VIEJ@28216|Betaproteobacteria,1K19S@119060|Burkholderiaceae 28216|Betaproteobacteria J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1,zf-FPG_IleRS EH3_k127_3856500_0 1216976.AX27061_0970 4.642e-260 811.0 COG0178@1|root,COG0178@2|Bacteria,1MW0W@1224|Proteobacteria,2VI87@28216|Betaproteobacteria,3T1BB@506|Alcaligenaceae 28216|Betaproteobacteria L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA2 - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran EH3_k127_3864337_2 887898.HMPREF0551_0032 1.716e-53 192.0 COG0045@1|root,COG0045@2|Bacteria,1MVCE@1224|Proteobacteria,2VHBG@28216|Betaproteobacteria,1K06K@119060|Burkholderiaceae 28216|Betaproteobacteria F Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit sucC - 6.2.1.5 ko:K01903 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00405,R02404 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp_2,Ligase_CoA EH3_k127_3864337_1 1158292.JPOE01000005_gene568 5.023e-65 236.0 2BZNP@1|root,30717@2|Bacteria,1MYNY@1224|Proteobacteria,2WG5D@28216|Betaproteobacteria,1KNPV@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Protein of unknown function (DUF2889) - - - - - - - - - - - - DUF2889 EH3_k127_3864337_0 760117.JN27_11870 1.082e-148 481.0 COG0624@1|root,COG3195@1|root,COG0624@2|Bacteria,COG3195@2|Bacteria,1MVUX@1224|Proteobacteria,2VIGB@28216|Betaproteobacteria,4769D@75682|Oxalobacteraceae 28216|Betaproteobacteria E OHCU decarboxylase uraD - 3.5.1.6,3.5.1.87,3.5.3.9 ko:K02083,ko:K06016 ko00230,ko00240,ko01100,ko01120,map00230,map00240,map01100,map01120 M00046 R00905,R02423,R04666 RC00064,RC00096 ko00000,ko00001,ko00002,ko01000,ko01002 - - - M20_dimer,OHCU_decarbox,Peptidase_M20,Peptidase_M28 EH3_k127_3864337_3 887062.HGR_03057 8.584e-20 91.0 COG0154@1|root,COG0154@2|Bacteria,1MU51@1224|Proteobacteria,2VIXK@28216|Betaproteobacteria,4ACRB@80864|Comamonadaceae 28216|Betaproteobacteria J Belongs to the amidase family - - 3.5.1.4,6.3.5.6,6.3.5.7 ko:K01426,ko:K02433 ko00330,ko00360,ko00380,ko00627,ko00643,ko00970,ko01100,ko01120,map00330,map00360,map00380,map00627,map00643,map00970,map01100,map01120 - R02540,R03096,R03180,R03905,R03909,R04212,R05551,R05590 RC00010,RC00100,RC00950,RC01025 ko00000,ko00001,ko01000,ko03029 - - - Amidase EH3_k127_3937193_1 1000565.METUNv1_01302 1.692e-113 377.0 COG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,2VI2G@28216|Betaproteobacteria,2KV4M@206389|Rhodocyclales 206389|Rhodocyclales O Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen glnD - 2.7.7.59 ko:K00990 ko02020,map02020 - - - ko00000,ko00001,ko01000 - - - ACT,GlnD_UR_UTase,HD,NTP_transf_2 EH3_k127_3937193_0 1349767.GJA_2804 9.002e-133 446.0 COG0024@1|root,COG0024@2|Bacteria,1MU99@1224|Proteobacteria,2VH2K@28216|Betaproteobacteria,472JJ@75682|Oxalobacteraceae 28216|Betaproteobacteria E Metallopeptidase family M24 map GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 EH3_k127_3937193_2 1095769.CAHF01000011_gene2239 1.596e-80 270.0 COG0052@1|root,COG0052@2|Bacteria,1MU33@1224|Proteobacteria,2VI8V@28216|Betaproteobacteria,4733Y@75682|Oxalobacteraceae 28216|Betaproteobacteria J Belongs to the universal ribosomal protein uS2 family rpsB - - ko:K02967 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S2 EH3_k127_3957828_0 159087.Daro_0465 5.523e-195 621.0 COG1752@1|root,COG4775@1|root,COG1752@2|Bacteria,COG4775@2|Bacteria,1MUM9@1224|Proteobacteria,2VJRI@28216|Betaproteobacteria,2KUW0@206389|Rhodocyclales 206389|Rhodocyclales M Patatin-like phospholipase - - - ko:K07001 - - - - ko00000 - - - Bac_surface_Ag,Patatin EH3_k127_3970163_4 279714.FuraDRAFT_0462 1.284e-13 72.0 COG0802@1|root,COG0802@2|Bacteria,1RGYU@1224|Proteobacteria,2VSJY@28216|Betaproteobacteria,2KRA9@206351|Neisseriales 206351|Neisseriales S Hydrolase, P-loop family - - - ko:K06925 - - - - ko00000,ko03016 - - - TsaE EH3_k127_3970163_1 522306.CAP2UW1_3152 1.38e-144 471.0 COG0860@1|root,COG0860@2|Bacteria,1MUQK@1224|Proteobacteria,2VHXN@28216|Betaproteobacteria,1KPQN@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria M N-acetylmuramoyl-L-alanine amidase amiC - 3.5.1.28 ko:K01448 ko01503,map01503 M00727 R04112 RC00064,RC00141 ko00000,ko00001,ko00002,ko01000,ko01011,ko03036 - - - AMIN,Amidase_3 EH3_k127_3970163_3 762966.HMPREF9439_00684 3.256e-59 215.0 COG0586@1|root,COG0586@2|Bacteria,1MX4M@1224|Proteobacteria,2VJCP@28216|Betaproteobacteria,4PQM1@995019|Sutterellaceae 28216|Betaproteobacteria S SNARE associated Golgi protein dedA - - ko:K03975 - - - - ko00000 - - - SNARE_assoc EH3_k127_3970163_0 1144342.PMI40_03958 2.054e-199 640.0 COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,2VIBW@28216|Betaproteobacteria,473EF@75682|Oxalobacteraceae 28216|Betaproteobacteria L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL - - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C EH3_k127_3970163_2 1265502.KB905931_gene1642 2.737e-76 285.0 COG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2VJ74@28216|Betaproteobacteria,4AB8F@80864|Comamonadaceae 28216|Betaproteobacteria EGP Major facilitator superfamily - - - ko:K07552,ko:K18552 - - - - br01600,ko00000,ko01504,ko02000 2.A.1.2,2.A.1.2.3 - - MFS_1 EH3_k127_398548_8 278963.ATWD01000001_gene2888 4.999e-19 92.0 COG1872@1|root,COG1872@2|Bacteria,3Y5S4@57723|Acidobacteria,2JK1F@204432|Acidobacteriia 204432|Acidobacteriia S Belongs to the UPF0235 family - - - ko:K09131 - - - - ko00000 - - - DUF167 EH3_k127_398548_1 323848.Nmul_A0705 7.835e-159 508.0 COG0407@1|root,COG0407@2|Bacteria,1MUG1@1224|Proteobacteria,2VHC2@28216|Betaproteobacteria,372TZ@32003|Nitrosomonadales 28216|Betaproteobacteria H Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III hemE - 4.1.1.37 ko:K01599 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03197,R04972 RC00872 ko00000,ko00001,ko00002,ko01000 - - - URO-D EH3_k127_398548_0 365046.Rta_04990 2.595e-186 604.0 COG1198@1|root,COG1198@2|Bacteria,1MUUZ@1224|Proteobacteria,2VINT@28216|Betaproteobacteria,4AAF6@80864|Comamonadaceae 28216|Betaproteobacteria L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA priA - - ko:K04066 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,ResIII EH3_k127_398548_4 887062.HGR_03287 2.43e-48 181.0 COG4315@1|root,COG4315@2|Bacteria,1MZC6@1224|Proteobacteria,2VU7D@28216|Betaproteobacteria,4AEXB@80864|Comamonadaceae 28216|Betaproteobacteria S PFAM Secreted repeat of - - - - - - - - - - - - Lipoprotein_15 EH3_k127_398548_5 1123393.KB891330_gene861 2.295e-45 173.0 COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2VSEK@28216|Betaproteobacteria,1KT1T@119069|Hydrogenophilales 119069|Hydrogenophilales K Sigma-70, region 4 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 EH3_k127_398548_3 29581.BW37_03573 1.835e-62 227.0 COG5662@1|root,COG5662@2|Bacteria,1RK1X@1224|Proteobacteria,2VQDP@28216|Betaproteobacteria,472NC@75682|Oxalobacteraceae 28216|Betaproteobacteria K transmembrane transcriptional regulator (Anti-sigma factor) prtR - - - - - - - - - - - zf-HC2 EH3_k127_398548_2 1156919.QWC_26877 1.619e-64 235.0 COG3245@1|root,COG3245@2|Bacteria,1MZBZ@1224|Proteobacteria,2VMBB@28216|Betaproteobacteria,3T2GI@506|Alcaligenaceae 28216|Betaproteobacteria C COG3245 Cytochrome c5 - - - - - - - - - - - - Cytochrome_CBB3 EH3_k127_398548_9 1301098.PKB_4789 1.283e-13 79.0 COG4970@1|root,COG4970@2|Bacteria,1N0X8@1224|Proteobacteria,1SBSV@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU Type II transport protein GspH fimT - - ko:K08084 - - - - ko00000,ko02044 3.A.15.2 - - GspH,N_methyl EH3_k127_398548_7 1448139.AI20_15895 1.999e-19 96.0 COG4967@1|root,COG4967@2|Bacteria,1N6TG@1224|Proteobacteria,1SC9Z@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU type IV pilus modification protein PilV pilV - - ko:K02671 - - - - ko00000,ko02035,ko02044 - - - N_methyl EH3_k127_398548_6 305700.B447_00300 1.387e-35 151.0 COG4966@1|root,COG4966@2|Bacteria,1R5YK@1224|Proteobacteria,2VQY3@28216|Betaproteobacteria,2KXFS@206389|Rhodocyclales 206389|Rhodocyclales NU Prokaryotic N-terminal methylation motif - - - ko:K02672 - - - - ko00000,ko02035,ko02044 - - - N_methyl,PilW EH3_k127_398548_10 396588.Tgr7_3226 1.739e-12 79.0 COG4726@1|root,COG4726@2|Bacteria 2|Bacteria NU Pilus assembly protein PilX pilX - - ko:K02673 - - - - ko00000,ko02035,ko02044 - - - PilX,PilX_N EH3_k127_3997379_10 1235457.C404_11370 1.286e-36 157.0 COG1295@1|root,COG1295@2|Bacteria,1QICW@1224|Proteobacteria,2VJNM@28216|Betaproteobacteria,1K0NM@119060|Burkholderiaceae 28216|Betaproteobacteria S UPF0761 membrane protein rbn - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB EH3_k127_3997379_3 1217718.ALOU01000088_gene2934 4.425e-81 286.0 COG0655@1|root,COG0655@2|Bacteria,1MW7N@1224|Proteobacteria,2VJMC@28216|Betaproteobacteria,1K096@119060|Burkholderiaceae 28216|Betaproteobacteria S Belongs to the WrbA family wrbA - 1.6.5.2 ko:K03809 ko00130,ko01110,map00130,map01110 - R02964,R03643,R03816 RC00819 ko00000,ko00001,ko01000 - - - FMN_red EH3_k127_3997379_11 94624.Bpet3041 9.643e-29 120.0 COG3308@1|root,COG3308@2|Bacteria,1N1EF@1224|Proteobacteria,2VU3C@28216|Betaproteobacteria,3T470@506|Alcaligenaceae 28216|Betaproteobacteria S membrane - - - - - - - - - - - - DUF2069 EH3_k127_3997379_0 1247649.D560_0466 1.908e-173 563.0 COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2VH5A@28216|Betaproteobacteria,3T2CQ@506|Alcaligenaceae 28216|Betaproteobacteria C COG0277 FAD FMN-containing dehydrogenases - - - - - - - - - - - - FAD-oxidase_C,FAD_binding_4 EH3_k127_3997379_1 365046.Rta_18130 3.444e-136 442.0 COG0042@1|root,COG0042@2|Bacteria,1MUY1@1224|Proteobacteria,2VHCA@28216|Betaproteobacteria,4A9MT@80864|Comamonadaceae 28216|Betaproteobacteria J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs dusA - - ko:K05539 - - - - ko00000,ko01000,ko03016 - - - Dus EH3_k127_3997379_4 365044.Pnap_3985 6.872e-69 243.0 COG3963@1|root,COG3963@2|Bacteria,1N1KB@1224|Proteobacteria,2VTPN@28216|Betaproteobacteria,4AEPX@80864|Comamonadaceae 28216|Betaproteobacteria I Ribosomal RNA adenine dimethylase - - - - - - - - - - - - Methyltransf_25 EH3_k127_3997379_12 396588.Tgr7_2604 4.932e-21 102.0 2EH9I@1|root,33B1E@2|Bacteria,1NH43@1224|Proteobacteria,1SD9Y@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Protein of unknown function (DUF2788) - - - - - - - - - - - - DUF2788 EH3_k127_3997379_6 338969.Rfer_0009 5.439e-58 212.0 COG5473@1|root,COG5473@2|Bacteria,1MVRU@1224|Proteobacteria,2VK3K@28216|Betaproteobacteria,4AA4C@80864|Comamonadaceae 28216|Betaproteobacteria S Predicted integral membrane protein (DUF2189) - - - - - - - - - - - - DUF2189 EH3_k127_3997379_5 296591.Bpro_0144 1.226e-58 211.0 COG0346@1|root,COG0346@2|Bacteria,1RHD4@1224|Proteobacteria,2VSJM@28216|Betaproteobacteria,4AEJT@80864|Comamonadaceae 28216|Betaproteobacteria E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - ko:K08234 - - - - ko00000 - - - Glyoxalase EH3_k127_3997379_13 1122612.AUBA01000010_gene109 1.269e-10 64.0 2E4GE@1|root,32ZBK@2|Bacteria,1P2JS@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - EH3_k127_3997379_2 420662.Mpe_A1231 4.982e-122 401.0 COG0810@1|root,COG0810@2|Bacteria,1R65W@1224|Proteobacteria,2W055@28216|Betaproteobacteria,1KNG4@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - - - - - - - - - - - EH3_k127_3997379_7 420662.Mpe_A1230 1.94e-55 206.0 COG0848@1|root,COG0848@2|Bacteria,1RENY@1224|Proteobacteria,2W30E@28216|Betaproteobacteria,1KNKV@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Biopolymer transport protein ExbD/TolR - - - - - - - - - - - - ExbD EH3_k127_3997379_8 864051.BurJ1DRAFT_1737 7.419e-53 191.0 COG0848@1|root,COG0848@2|Bacteria,1RHI8@1224|Proteobacteria,2W2ZB@28216|Betaproteobacteria,1KNMZ@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Biopolymer transport protein ExbD/TolR - - - - - - - - - - - - ExbD EH3_k127_3997379_9 864051.BurJ1DRAFT_1738 2.531e-49 177.0 COG0811@1|root,COG0811@2|Bacteria,1PKF8@1224|Proteobacteria,2W1K9@28216|Betaproteobacteria,1KN6K@119065|unclassified Burkholderiales 28216|Betaproteobacteria U MotA/TolQ/ExbB proton channel family - - - - - - - - - - - - MotA_ExbB EH3_k127_4013772_0 1123487.KB892843_gene805 3.049e-232 725.0 COG0518@1|root,COG0519@1|root,COG0518@2|Bacteria,COG0519@2|Bacteria,1MU2A@1224|Proteobacteria,2VHNG@28216|Betaproteobacteria,2KVB1@206389|Rhodocyclales 206389|Rhodocyclales F Catalyzes the synthesis of GMP from XMP guaA - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase,GMP_synt_C,NAD_synthase EH3_k127_4013772_1 742823.HMPREF9465_00062 9.739e-43 157.0 COG0516@1|root,COG0517@1|root,COG0516@2|Bacteria,COG0517@2|Bacteria,1MUJM@1224|Proteobacteria,2VH9X@28216|Betaproteobacteria,4PQ82@995019|Sutterellaceae 28216|Betaproteobacteria F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth guaB - 1.1.1.205 ko:K00088 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 M00050 R01130,R08240 RC00143,RC02207 ko00000,ko00001,ko00002,ko01000,ko04147 - - - CBS,IMPDH,NMO EH3_k127_4017477_1 1005048.CFU_2448 3.23e-81 286.0 COG1232@1|root,COG1232@2|Bacteria,1NQUH@1224|Proteobacteria,2VJV1@28216|Betaproteobacteria,472Y4@75682|Oxalobacteraceae 28216|Betaproteobacteria H Flavin containing amine oxidoreductase hpnE - 1.17.8.1 ko:K21677 - - - - ko00000,ko01000 - - - Amino_oxidase EH3_k127_4017477_0 1500894.JQNN01000001_gene1126 4.133e-121 399.0 COG1562@1|root,COG1562@2|Bacteria,1MX4W@1224|Proteobacteria,2VJ13@28216|Betaproteobacteria,473N2@75682|Oxalobacteraceae 28216|Betaproteobacteria I Squalene/phytoene synthase hpnD - 2.5.1.32,2.5.1.99 ko:K02291 ko00906,ko01062,ko01100,ko01110,map00906,map01062,map01100,map01110 M00097 R02065,R04218,R07270,R10177 RC00362,RC01101,RC02869 ko00000,ko00001,ko00002,ko01000,ko01006 - - - SQS_PSY EH3_k127_4017477_2 1144342.PMI40_01531 4.747e-47 172.0 COG1562@1|root,COG1562@2|Bacteria,1N6J2@1224|Proteobacteria,2VIZC@28216|Betaproteobacteria,473HF@75682|Oxalobacteraceae 28216|Betaproteobacteria I Squalene/phytoene synthase hpnC - 2.5.1.32,2.5.1.99 ko:K02291 ko00906,ko01062,ko01100,ko01110,map00906,map01062,map01100,map01110 M00097 R02065,R04218,R07270,R10177 RC00362,RC01101,RC02869 ko00000,ko00001,ko00002,ko01000,ko01006 - - - SQS_PSY EH3_k127_402655_2 859657.RPSI07_2997 2.204e-55 200.0 COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,2VH29@28216|Betaproteobacteria,1K3G6@119060|Burkholderiaceae 28216|Betaproteobacteria S ABC transporter lptB - - ko:K06861 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko01000,ko02000 1.B.42.1 - - ABC_tran,BCA_ABC_TP_C EH3_k127_402655_4 859657.RPSI07_2996 2.332e-38 151.0 COG1934@1|root,COG1934@2|Bacteria,1N776@1224|Proteobacteria,2VRDV@28216|Betaproteobacteria,1KH64@119060|Burkholderiaceae 28216|Betaproteobacteria S Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane lptA - - ko:K09774 - - - - ko00000,ko02000 1.B.42.1 - - OstA EH3_k127_402655_5 29581.BW37_03177 5.286e-15 85.0 COG3117@1|root,COG3117@2|Bacteria,1R5UK@1224|Proteobacteria,2VU37@28216|Betaproteobacteria,478RH@75682|Oxalobacteraceae 28216|Betaproteobacteria S Lipopolysaccharide-assembly, LptC-related lptC - - ko:K11719 - - - - ko00000,ko02000 1.B.42.1 - - LptC EH3_k127_402655_3 1218076.BAYB01000024_gene4164 1.78e-51 193.0 COG1778@1|root,COG1778@2|Bacteria,1RH85@1224|Proteobacteria,2VSXI@28216|Betaproteobacteria,1KH74@119060|Burkholderiaceae 28216|Betaproteobacteria S 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family kdsC - 3.1.3.45 ko:K03270 ko00540,ko01100,map00540,map01100 M00063 R03350 RC00017 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hydrolase_3 EH3_k127_402655_1 469610.HMPREF0189_01411 2.04e-124 406.0 COG0794@1|root,COG2905@1|root,COG0794@2|Bacteria,COG2905@2|Bacteria,1MUXD@1224|Proteobacteria,2VI24@28216|Betaproteobacteria,1KJ44@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Belongs to the SIS family. GutQ KpsF subfamily kdsD - 5.3.1.13 ko:K06041 ko00540,ko01100,map00540,map01100 M00063 R01530 RC00541 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CBS,SIS EH3_k127_402655_0 1366050.N234_01830 1.544e-216 685.0 COG0475@1|root,COG0490@1|root,COG1226@1|root,COG0475@2|Bacteria,COG0490@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,2VHQQ@28216|Betaproteobacteria,1K1JT@119060|Burkholderiaceae 28216|Betaproteobacteria P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family kefB - - ko:K03455 - - - - ko00000 2.A.37 - - Na_H_Exchanger,TrkA_C,TrkA_N EH3_k127_4035149_9 264198.Reut_A0037 2.547e-47 178.0 2DBPG@1|root,2ZA96@2|Bacteria,1QVNF@1224|Proteobacteria,2VP5D@28216|Betaproteobacteria,1K3DF@119060|Burkholderiaceae 28216|Betaproteobacteria S Domain of unknown function (DUF4382) - - - - - - - - - - - - CarboxypepD_reg,DUF4382 EH3_k127_4035149_12 987059.RBXJA2T_07668 1.432e-25 115.0 28NWD@1|root,2ZBU8@2|Bacteria,1RGNH@1224|Proteobacteria,2VRUN@28216|Betaproteobacteria,1KKWS@119065|unclassified Burkholderiales 28216|Betaproteobacteria - - - - - - - - - - - - - - DUF4124 EH3_k127_4035149_6 742821.HMPREF9464_00277 3.612e-77 265.0 COG0461@1|root,COG0461@2|Bacteria,1MW6F@1224|Proteobacteria,2VH9U@28216|Betaproteobacteria,4PQ4P@995019|Sutterellaceae 28216|Betaproteobacteria F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) pyrE - 2.4.2.10 ko:K00762 ko00240,ko01100,map00240,map01100 M00051 R01870 RC00611 ko00000,ko00001,ko00002,ko01000 - - - Pribosyltran EH3_k127_4035149_5 1266925.JHVX01000005_gene2020 1.526e-114 384.0 COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,2VI74@28216|Betaproteobacteria,372JW@32003|Nitrosomonadales 28216|Betaproteobacteria L Exodeoxyribonuclease III xth exoA - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos EH3_k127_4035149_1 365046.Rta_01960 4.378e-178 570.0 COG2211@1|root,COG2211@2|Bacteria,1QTSE@1224|Proteobacteria,2WGIZ@28216|Betaproteobacteria,4A9M2@80864|Comamonadaceae 28216|Betaproteobacteria G Major facilitator superfamily ampG - - ko:K08218 ko01501,map01501 M00628 - - ko00000,ko00001,ko00002,ko02000 2.A.1.25 - - Acatn,MFS_1 EH3_k127_4035149_8 243924.LT42_05925 5.984e-60 214.0 COG3837@1|root,COG3837@2|Bacteria,1N15Q@1224|Proteobacteria,1S80Z@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Auxin-binding protein - - - - - - - - - - - - Cupin_2 EH3_k127_4035149_7 1216976.AX27061_0483 2.65e-69 258.0 COG0500@1|root,COG2226@2|Bacteria,1MVSY@1224|Proteobacteria,2VMPA@28216|Betaproteobacteria,3T21M@506|Alcaligenaceae 28216|Betaproteobacteria Q Methionine biosynthesis protein MetW metW - - - - - - - - - - - MetW EH3_k127_4035149_0 339670.Bamb_3154 1.257e-195 617.0 COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,2VHU9@28216|Betaproteobacteria,1K0H9@119060|Burkholderiaceae 28216|Betaproteobacteria E Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine metXS - 2.3.1.31 ko:K00641 ko00270,ko01100,ko01130,map00270,map01100,map01130 - R01776 RC00004,RC00041 ko00000,ko00001,ko01000 - - - Abhydrolase_1 EH3_k127_4035149_13 1366050.N234_06360 1.661e-22 102.0 2AGC9@1|root,33W35@2|Bacteria,1NVNS@1224|Proteobacteria,2W31P@28216|Betaproteobacteria,1KDUT@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4035149_2 1000565.METUNv1_03542 4.94e-171 556.0 COG1080@1|root,COG1080@2|Bacteria,1MUT8@1224|Proteobacteria,2VH9N@28216|Betaproteobacteria,2KUBD@206389|Rhodocyclales 206389|Rhodocyclales G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) ptsI - 2.7.3.9 ko:K08483 ko02060,map02060 - - - ko00000,ko00001,ko01000,ko02000 8.A.7 - - PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C EH3_k127_4035149_11 292415.Tbd_2413 8.725e-30 121.0 COG1925@1|root,COG1925@2|Bacteria,1N6RM@1224|Proteobacteria,2VU8W@28216|Betaproteobacteria 28216|Betaproteobacteria G phosphocarrier protein Hpr ptsH GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - ko:K11189 - - - - ko00000,ko02000 4.A.2.1 - - PTS-HPr EH3_k127_4035149_10 1235457.C404_20180 1.579e-38 151.0 COG2893@1|root,COG2893@2|Bacteria,1RHH7@1224|Proteobacteria,2VT9I@28216|Betaproteobacteria,1K5AR@119060|Burkholderiaceae 28216|Betaproteobacteria G pts system fructose subfamily IIa component manX - 2.7.1.194 ko:K02821 ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060 M00283,M00550 R07671 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.7.1 - - EIIA-man EH3_k127_4035149_4 762376.AXYL_02264 8.517e-122 399.0 COG0189@1|root,COG0189@2|Bacteria,1MVUA@1224|Proteobacteria,2VIZ3@28216|Betaproteobacteria,3T2HG@506|Alcaligenaceae 28216|Betaproteobacteria H Belongs to the prokaryotic GSH synthase family gshB - 6.3.2.3 ko:K01920 ko00270,ko00480,ko01100,map00270,map00480,map01100 M00118 R00497,R10994 RC00096,RC00141 ko00000,ko00001,ko00002,ko01000 - - - GSH-S_ATP,GSH-S_N EH3_k127_4035149_3 365046.Rta_01450 2.607e-155 494.0 COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2VJ8B@28216|Betaproteobacteria,4AB9B@80864|Comamonadaceae 28216|Betaproteobacteria P ammonium transporter amtB - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp EH3_k127_4106993_4 262724.TT_P0211 1.008e-72 253.0 COG1373@1|root,COG1373@2|Bacteria,1WJIW@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S AAA domain - - - ko:K07133 - - - - ko00000 - - - AAA_14,DUF4143 EH3_k127_4106993_0 1454004.AW11_01042 2.351e-199 626.0 COG3177@1|root,COG3177@2|Bacteria,1MV69@1224|Proteobacteria,2VIY1@28216|Betaproteobacteria 28216|Betaproteobacteria K PFAM Filamentation induced by cAMP - - - - - - - - - - - - Fic,Fic_N,HTH_13,HTH_24 EH3_k127_4106993_3 1121035.AUCH01000005_gene224 4.239e-98 328.0 COG0413@1|root,COG0413@2|Bacteria,1MU3B@1224|Proteobacteria,2VHZ0@28216|Betaproteobacteria,2KU6F@206389|Rhodocyclales 206389|Rhodocyclales H Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate panB - 2.1.2.11 ko:K00606 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R01226 RC00022,RC00200 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_transf EH3_k127_4106993_1 671143.DAMO_0043 1.034e-115 386.0 COG0845@1|root,COG0845@2|Bacteria,2NQ2U@2323|unclassified Bacteria 2|Bacteria M Barrel-sandwich domain of CusB or HlyD membrane-fusion acrA - - ko:K02005 - - - - ko00000 - - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 EH3_k127_4106993_2 264198.Reut_B5857 9.54e-102 336.0 COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,2VIKP@28216|Betaproteobacteria,1K47S@119060|Burkholderiaceae 28216|Betaproteobacteria V abc transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran EH3_k127_4125311_4 314225.ELI_11020 4.094e-20 94.0 COG3832@1|root,COG3832@2|Bacteria 2|Bacteria J glyoxalase III activity - - - - - - - - - - - - AHSA1 EH3_k127_4125311_5 987059.RBXJA2T_04763 3.356e-06 51.0 COG0346@1|root,COG0346@2|Bacteria,1N1D4@1224|Proteobacteria,2WE8C@28216|Betaproteobacteria 28216|Betaproteobacteria E glyoxalase bleomycin resistance protein dioxygenase - - - - - - - - - - - - Glyoxalase EH3_k127_4125311_0 1173028.ANKO01000250_gene2314 1.127e-182 596.0 COG1506@1|root,COG1506@2|Bacteria,1G200@1117|Cyanobacteria,1H8T3@1150|Oscillatoriales 1117|Cyanobacteria E PFAM Prolyl oligopeptidase family dap2 - - - - - - - - - - - PD40,Peptidase_S9 EH3_k127_4125311_3 1298867.AUES01000006_gene471 5.71e-98 329.0 COG2010@1|root,COG2010@2|Bacteria,1MV6D@1224|Proteobacteria,2TT9U@28211|Alphaproteobacteria,3JVU8@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria C Cytochrome c - - - - - - - - - - - - Cytochrom_C,Cytochrome_CBB3 EH3_k127_4125311_1 420662.Mpe_A0899 3.875e-121 399.0 COG0604@1|root,COG0604@2|Bacteria,1MXRX@1224|Proteobacteria,2VKQT@28216|Betaproteobacteria 28216|Betaproteobacteria C Zinc-binding dehydrogenase - - 1.6.5.5 ko:K00344 - - - - ko00000,ko01000 - - - ADH_N,ADH_zinc_N EH3_k127_4125311_2 243365.CV_4014 2.296e-120 393.0 COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,2VIW1@28216|Betaproteobacteria,2KPTN@206351|Neisseriales 206351|Neisseriales O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groL - - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 EH3_k127_4144069_2 1038869.AXAN01000020_gene4135 4.974e-18 84.0 COG1556@1|root,COG1556@2|Bacteria,1R4TE@1224|Proteobacteria,2VJCF@28216|Betaproteobacteria,1K1I9@119060|Burkholderiaceae 28216|Betaproteobacteria S LUD domain - - - ko:K00782 - - - - ko00000 - - - LUD_dom EH3_k127_4144069_0 522306.CAP2UW1_0553 2.093e-177 567.0 COG1055@1|root,COG1055@2|Bacteria,1PUZK@1224|Proteobacteria,2VKEF@28216|Betaproteobacteria 28216|Betaproteobacteria P Involved in arsenical resistance. Thought to form the channel of an arsenite pump - - - - - - - - - - - - - EH3_k127_4144069_1 93220.LV28_09965 2.043e-101 358.0 COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2VMN7@28216|Betaproteobacteria,1K3PN@119060|Burkholderiaceae 28216|Betaproteobacteria CH D-isomer specific 2-hydroxyacid dehydrogenase gyaR - 1.1.1.215,1.1.1.26,1.1.1.79,1.1.1.81 ko:K00015,ko:K00090 ko00030,ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00030,map00260,map00620,map00630,map01100,map01110,map01120 - R00465,R00717,R01388,R01392,R01739 RC00031,RC00042,RC00084 ko00000,ko00001,ko01000 - - - 2-Hacid_dh,2-Hacid_dh_C EH3_k127_4154254_1 572477.Alvin_0317 3.543e-54 194.0 COG1225@1|root,COG1225@2|Bacteria,1R9YF@1224|Proteobacteria,1S37E@1236|Gammaproteobacteria,1WWWB@135613|Chromatiales 135613|Chromatiales O PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - AhpC-TSA EH3_k127_4154254_0 1122603.ATVI01000005_gene3069 1.825e-303 943.0 COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,1RMWP@1236|Gammaproteobacteria,1X498@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate - - - - - - - - - - - - Transket_pyr,Transketolase_C,Transketolase_N EH3_k127_4223961_5 757424.Hsero_3201 4.668e-39 149.0 COG2010@1|root,COG2010@2|Bacteria,1MUCW@1224|Proteobacteria,2VHGS@28216|Betaproteobacteria,4726F@75682|Oxalobacteraceae 28216|Betaproteobacteria C C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex ccoP - - ko:K00406 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrome_CBB3,FixP_N EH3_k127_4223961_0 365044.Pnap_3778 1.412e-183 588.0 COG0348@1|root,COG0348@2|Bacteria,1MVFY@1224|Proteobacteria,2VHRH@28216|Betaproteobacteria,4AB30@80864|Comamonadaceae 28216|Betaproteobacteria C PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein ccoG - - - - - - - - - - - Fer4_18,Fer4_5,FixG_C EH3_k127_4223961_7 640081.Dsui_1632 8.009e-22 103.0 COG3198@1|root,COG3198@2|Bacteria,1N75J@1224|Proteobacteria,2VTYE@28216|Betaproteobacteria,2KX1A@206389|Rhodocyclales 206389|Rhodocyclales S FixH family - - - ko:K09926 - - - - ko00000 - - - FixH EH3_k127_4223961_6 358220.C380_15545 1.753e-22 108.0 2EFX9@1|root,339PI@2|Bacteria,1NI0D@1224|Proteobacteria,2VU0U@28216|Betaproteobacteria,4AF5J@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4223961_2 742821.HMPREF9464_00950 1.09e-108 357.0 COG0664@1|root,COG0664@2|Bacteria,1MVGE@1224|Proteobacteria,2VH04@28216|Betaproteobacteria,4PQMG@995019|Sutterellaceae 28216|Betaproteobacteria K Bacterial regulatory proteins, crp family fnr - - ko:K01420 - - - - ko00000,ko03000 - - - HTH_Crp_2,cNMP_binding EH3_k127_4223961_1 748247.AZKH_3205 2.101e-180 577.0 COG0635@1|root,COG0635@2|Bacteria,1MV1I@1224|Proteobacteria,2VJ1F@28216|Betaproteobacteria,2KVK4@206389|Rhodocyclales 206389|Rhodocyclales H Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - - - - - - - - - - HemN_C,Radical_SAM EH3_k127_4223961_4 396588.Tgr7_2923 2.945e-42 164.0 COG2836@1|root,COG2836@2|Bacteria,1RIGJ@1224|Proteobacteria,1S5V1@1236|Gammaproteobacteria,1WXWD@135613|Chromatiales 135613|Chromatiales S Cytochrome C biogenesis protein transmembrane region - - - ko:K09792 - - - - ko00000 - - - DsbD_2 EH3_k127_4223961_3 987059.RBXJA2T_09392 3.103e-73 259.0 COG1575@1|root,COG1575@2|Bacteria,1MXQQ@1224|Proteobacteria,2VJX1@28216|Betaproteobacteria,1KMPW@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Belongs to the MenA family. Type 1 subfamily menA - 2.5.1.74 ko:K02548 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116 R05617,R06858,R10757 RC02935,RC02936,RC03264 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA EH3_k127_4223961_8 882378.RBRH_01067 1.098e-16 81.0 COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,2VH6Z@28216|Betaproteobacteria,1K06F@119060|Burkholderiaceae 28216|Betaproteobacteria J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD EH3_k127_4238811_3 1100720.ALKN01000007_gene3064 1.785e-19 87.0 COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2VKYI@28216|Betaproteobacteria,4A9Y9@80864|Comamonadaceae 28216|Betaproteobacteria E Belongs to the binding-protein-dependent transport system permease family - - - ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_4238811_2 1100720.ALKN01000007_gene3063 3.603e-119 389.0 COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2VJRS@28216|Betaproteobacteria,4AAWC@80864|Comamonadaceae 28216|Betaproteobacteria E Branched-chain amino acid ATP-binding cassette transporter - - - ko:K01995 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C EH3_k127_4238811_1 358220.C380_03390 2.685e-119 388.0 COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2VJNC@28216|Betaproteobacteria,4ABEP@80864|Comamonadaceae 28216|Betaproteobacteria E AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01996 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran EH3_k127_4238811_0 1100720.ALKN01000007_gene3061 1.384e-185 593.0 COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2VI0U@28216|Betaproteobacteria,4A9UR@80864|Comamonadaceae 28216|Betaproteobacteria I AMP-dependent synthetase and ligase - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding EH3_k127_4257788_2 742823.HMPREF9465_00385 2.821e-73 250.0 COG1136@1|root,COG1136@2|Bacteria,1MVSQ@1224|Proteobacteria,2VHAQ@28216|Betaproteobacteria,4PQZD@995019|Sutterellaceae 28216|Betaproteobacteria V Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner lolD - - ko:K09810 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.125 - - ABC_tran EH3_k127_4257788_6 1276756.AUEX01000005_gene2801 9.175e-12 76.0 2EMQY@1|root,33FDF@2|Bacteria,1NPR7@1224|Proteobacteria,2VYZM@28216|Betaproteobacteria,4AIQD@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4257788_5 767434.Fraau_1935 1.538e-13 82.0 COG4783@1|root,COG4783@2|Bacteria 2|Bacteria L chaperone-mediated protein folding - - - - - - - - - - - - Glycos_transf_2,PQQ_2,TPR_16 EH3_k127_4257788_3 1121035.AUCH01000001_gene1940 6.039e-50 191.0 COG3216@1|root,COG3216@2|Bacteria,1RGV6@1224|Proteobacteria,2VSHR@28216|Betaproteobacteria,2KW1R@206389|Rhodocyclales 206389|Rhodocyclales S protein conserved in bacteria - - - ko:K09928 - - - - ko00000 - - - DUF2062 EH3_k127_4257788_0 987059.RBXJA2T_17177 1.131e-91 309.0 COG0084@1|root,COG0084@2|Bacteria,1MW5C@1224|Proteobacteria,2VH67@28216|Betaproteobacteria,1KJHX@119065|unclassified Burkholderiales 28216|Betaproteobacteria L TatD related DNase yjjV - - ko:K03424 - - - - ko00000,ko01000 - - - TatD_DNase EH3_k127_4257788_1 1500894.JQNN01000001_gene1004 4.841e-82 284.0 COG0658@1|root,COG2333@1|root,COG0658@2|Bacteria,COG2333@2|Bacteria,1MUKF@1224|Proteobacteria,2VHKP@28216|Betaproteobacteria,4737H@75682|Oxalobacteraceae 28216|Betaproteobacteria S Competence protein comA - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Competence,DUF4131,Lactamase_B EH3_k127_4409277_0 76114.ebA3547 5.868e-191 601.0 COG3396@1|root,COG3396@2|Bacteria,1MVQ7@1224|Proteobacteria,2VHQZ@28216|Betaproteobacteria,2KUW7@206389|Rhodocyclales 206389|Rhodocyclales S Phenylacetate-CoA oxygenase subunit PaaA paaA - 1.14.13.149 ko:K02609 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001,ko01000 - - - PaaA_PaaC EH3_k127_4409277_8 748247.AZKH_0415 8.788e-52 184.0 COG3460@1|root,COG3460@2|Bacteria,1RHM5@1224|Proteobacteria,2VSR2@28216|Betaproteobacteria,2KX2A@206389|Rhodocyclales 206389|Rhodocyclales Q Phenylacetate-CoA oxygenase subunit PaaB paaB - - ko:K02610 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001 - - - PaaB EH3_k127_4409277_4 748247.AZKH_0416 7.333e-115 374.0 COG3396@1|root,COG3396@2|Bacteria,1MVYQ@1224|Proteobacteria,2VJ03@28216|Betaproteobacteria,2KW9B@206389|Rhodocyclales 206389|Rhodocyclales S Phenylacetic acid catabolic protein paaC - 1.14.13.149 ko:K02611 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001,ko01000 - - - PaaA_PaaC EH3_k127_4409277_6 748247.AZKH_0417 3.688e-64 223.0 COG2151@1|root,COG3677@1|root,COG2151@2|Bacteria,COG3677@2|Bacteria,1RF3S@1224|Proteobacteria,2WE95@28216|Betaproteobacteria,2M02B@206389|Rhodocyclales 206389|Rhodocyclales L Pfam:DUF59 paaD - - ko:K02612 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001 - - - FeS_assembly_P EH3_k127_4409277_3 62928.azo0308 3.71e-150 487.0 COG1018@1|root,COG1018@2|Bacteria,1MY2Q@1224|Proteobacteria,2VKK1@28216|Betaproteobacteria,2KUHX@206389|Rhodocyclales 206389|Rhodocyclales C COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 paaE - - ko:K02613 ko00360,ko01120,map00360,map01120 - R09838 RC02690 ko00000,ko00001 - - - FAD_binding_6,Fer2,NAD_binding_1 EH3_k127_4409277_7 748247.AZKH_0419 1.756e-55 218.0 COG1309@1|root,COG1309@2|Bacteria,1QYD4@1224|Proteobacteria,2VMMD@28216|Betaproteobacteria,2KW24@206389|Rhodocyclales 206389|Rhodocyclales K Bacterial regulatory proteins, tetR family paaR - - - - - - - - - - - TetR_N EH3_k127_4409277_1 748247.AZKH_4521 2.774e-188 597.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2VIF8@28216|Betaproteobacteria,2KXQR@206389|Rhodocyclales 206389|Rhodocyclales I Beta-ketoacyl synthase, N-terminal domain - - - - - - - - - - - - Thiolase_C,Thiolase_N EH3_k127_4409277_2 62928.azo0311 5.003e-188 593.0 COG0683@1|root,COG0683@2|Bacteria,1MXR4@1224|Proteobacteria,2VHP9@28216|Betaproteobacteria,2KVKD@206389|Rhodocyclales 206389|Rhodocyclales E amino acid - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 EH3_k127_4409277_5 62928.azo0312 1.025e-78 269.0 COG0559@1|root,COG0559@2|Bacteria,1MXMC@1224|Proteobacteria,2VJ1Y@28216|Betaproteobacteria,2KUY3@206389|Rhodocyclales 206389|Rhodocyclales U Belongs to the binding-protein-dependent transport system permease family - - - ko:K01997 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_4412745_0 1348657.M622_15910 2.313e-141 455.0 COG3288@1|root,COG3288@2|Bacteria,1MVXU@1224|Proteobacteria,2VJZN@28216|Betaproteobacteria,2KVAK@206389|Rhodocyclales 206389|Rhodocyclales C NAD(P) transhydrogenase, alpha subunit - - 1.6.1.2 ko:K00324 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - AlaDh_PNT_C,AlaDh_PNT_N EH3_k127_4412745_2 1123487.KB892846_gene530 2.23e-41 160.0 COG3288@1|root,COG3288@2|Bacteria,1N0TD@1224|Proteobacteria,2WE9I@28216|Betaproteobacteria,2KWZH@206389|Rhodocyclales 206389|Rhodocyclales C COG3288 NAD NADP transhydrogenase alpha subunit - - 1.6.1.2 ko:K00324 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - PNTB_4TM EH3_k127_4412745_1 1123367.C666_04535 1.281e-121 403.0 COG1282@1|root,COG1282@2|Bacteria,1MUP4@1224|Proteobacteria,2VIDR@28216|Betaproteobacteria,2KURP@206389|Rhodocyclales 206389|Rhodocyclales C The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane pntB - 1.6.1.2 ko:K00325 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - PNTB EH3_k127_4416527_2 742823.HMPREF9465_01539 1.027e-97 327.0 COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,2VMHH@28216|Betaproteobacteria,4PQWS@995019|Sutterellaceae 28216|Betaproteobacteria P Cation efflux family czcD - - ko:K16264 - - - - ko00000,ko02000 2.A.4.1 - - Cation_efflux,ZT_dimer EH3_k127_4416527_1 1538295.JY96_00790 2.074e-109 357.0 COG2057@1|root,COG2057@2|Bacteria,1RA4V@1224|Proteobacteria,2VII6@28216|Betaproteobacteria,1KKFA@119065|unclassified Burkholderiales 28216|Betaproteobacteria I 3-oxoacid CoA-transferase, B subunit scoB - 2.8.3.5 ko:K01029 ko00072,ko00280,ko00650,map00072,map00280,map00650 - R00410 RC00014 ko00000,ko00001,ko01000 - - - CoA_trans EH3_k127_4416527_0 1434929.X946_1225 1.813e-122 396.0 COG1788@1|root,COG1788@2|Bacteria,1MVEI@1224|Proteobacteria,2VHFT@28216|Betaproteobacteria,1K11M@119060|Burkholderiaceae 28216|Betaproteobacteria I 3-oxoacid CoA-transferase, A subunit scoA - 2.8.3.5 ko:K01028 ko00072,ko00280,ko00650,map00072,map00280,map00650 - R00410 RC00014 ko00000,ko00001,ko01000 - - - CoA_trans EH3_k127_4416527_3 159450.NH14_21005 9.881e-07 50.0 COG0824@1|root,COG0824@2|Bacteria,1RHCN@1224|Proteobacteria,2VSDH@28216|Betaproteobacteria,1K705@119060|Burkholderiaceae 28216|Betaproteobacteria S thioesterase - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 EH3_k127_4422232_0 1349767.GJA_3205 1.007e-171 546.0 COG0505@1|root,COG0505@2|Bacteria,1MUB9@1224|Proteobacteria,2VH9Q@28216|Betaproteobacteria,47351@75682|Oxalobacteraceae 28216|Betaproteobacteria F Belongs to the CarA family carA - 6.3.5.5 ko:K01956 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_sm_chain,GATase EH3_k127_4422232_4 1265502.KB905951_gene842 8.087e-147 467.0 COG0600@1|root,COG0600@2|Bacteria,1MVD2@1224|Proteobacteria,2VI9N@28216|Betaproteobacteria,4AC9H@80864|Comamonadaceae 28216|Betaproteobacteria P Binding-protein-dependent transport system inner membrane component - - - ko:K02050 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - BPD_transp_1 EH3_k127_4422232_3 266264.Rmet_2121 1.235e-148 473.0 COG1116@1|root,COG1116@2|Bacteria,1N7FP@1224|Proteobacteria,2VHGX@28216|Betaproteobacteria,1KGMZ@119060|Burkholderiaceae 28216|Betaproteobacteria P PFAM ABC transporter related - - - ko:K02049 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - ABC_tran EH3_k127_4422232_2 1265502.KB905951_gene844 1.046e-150 484.0 COG0715@1|root,COG0715@2|Bacteria,1MVZE@1224|Proteobacteria,2VJ88@28216|Betaproteobacteria,4A9W3@80864|Comamonadaceae 28216|Betaproteobacteria P NMT1-like family - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1_2 EH3_k127_4422232_5 75379.Tint_0808 5.105e-85 302.0 COG2199@1|root,COG2202@1|root,COG2199@2|Bacteria,COG2202@2|Bacteria,1NWNJ@1224|Proteobacteria,2W2SI@28216|Betaproteobacteria,1KPEV@119065|unclassified Burkholderiales 28216|Betaproteobacteria T diguanylate cyclase - - - - - - - - - - - - GGDEF,PAS_4 EH3_k127_4422232_9 264198.Reut_A0831 7.877e-34 140.0 COG3686@1|root,COG3686@2|Bacteria,1N8EA@1224|Proteobacteria,2VSWW@28216|Betaproteobacteria 28216|Betaproteobacteria S membrane - - - - - - - - - - - - MAPEG EH3_k127_4422232_6 1217718.ALOU01000019_gene2643 6.065e-83 281.0 COG0353@1|root,COG0353@2|Bacteria,1MV9Q@1224|Proteobacteria,2VJVJ@28216|Betaproteobacteria,1K1AD@119060|Burkholderiaceae 28216|Betaproteobacteria L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO recR - - ko:K06187 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecR,Toprim_4 EH3_k127_4422232_8 196367.JNFG01000001_gene2011 7.405e-47 171.0 COG0718@1|root,COG0718@2|Bacteria,1RGZD@1224|Proteobacteria,2VSJ2@28216|Betaproteobacteria,1K7N7@119060|Burkholderiaceae 28216|Betaproteobacteria S Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection ybaB - - ko:K09747 - - - - ko00000 - - - YbaB_DNA_bd EH3_k127_4422232_1 1031711.RSPO_c02177 2.45e-170 553.0 COG2812@1|root,COG2812@2|Bacteria,1MVCK@1224|Proteobacteria,2VIE0@28216|Betaproteobacteria,1K1R7@119060|Burkholderiaceae 28216|Betaproteobacteria L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity dnaX - 2.7.7.7 ko:K02343 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNA_pol3_gamma3,DNA_pol3_tau_5 EH3_k127_4422232_7 266117.Rxyl_0238 1.288e-70 243.0 COG0154@1|root,COG0154@2|Bacteria,2GKPZ@201174|Actinobacteria,4CPJR@84995|Rubrobacteria 84995|Rubrobacteria J Belongs to the amidase family - - 3.5.1.4 ko:K01426 ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120 - R02540,R03096,R03180,R03909,R05551,R05590 RC00010,RC00100,RC00950,RC01025 ko00000,ko00001,ko01000 - - - Amidase EH3_k127_4424986_0 757424.Hsero_3614 1.628e-183 584.0 COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,2VH6Z@28216|Betaproteobacteria,47292@75682|Oxalobacteraceae 28216|Betaproteobacteria J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD EH3_k127_4424986_5 1123504.JQKD01000036_gene3133 6.561e-07 56.0 2ECJW@1|root,336I0@2|Bacteria,1N8YK@1224|Proteobacteria,2VWUU@28216|Betaproteobacteria,4AFR6@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4424986_1 397945.Aave_1988 2.627e-62 219.0 COG2816@1|root,COG2816@2|Bacteria,1REUJ@1224|Proteobacteria,2VRF4@28216|Betaproteobacteria,4ADHV@80864|Comamonadaceae 28216|Betaproteobacteria L PFAM NUDIX hydrolase - - 3.6.1.22 ko:K03426 ko00760,ko01100,ko04146,map00760,map01100,map04146 - R00103,R03004,R11104 RC00002 ko00000,ko00001,ko01000 - - - NUDIX,Nudix_N_2 EH3_k127_4424986_3 420662.Mpe_A1134 1.558e-28 125.0 COG0425@1|root,COG0425@2|Bacteria,1MZA5@1224|Proteobacteria,2VVW5@28216|Betaproteobacteria,1KMF3@119065|unclassified Burkholderiales 28216|Betaproteobacteria O Belongs to the sulfur carrier protein TusA family sirA - - ko:K04085 ko04122,map04122 - - - ko00000,ko00001,ko01000,ko03016 - - - TusA EH3_k127_4424986_2 1538295.JY96_14600 1.906e-44 170.0 2DM6D@1|root,31WQ8@2|Bacteria,1MZ7P@1224|Proteobacteria,2VUHB@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4424986_4 269797.Mbar_A0375 2.179e-21 95.0 COG0438@1|root,arCOG05174@2157|Archaea,2XX01@28890|Euryarchaeota,2N9IX@224756|Methanomicrobia 224756|Methanomicrobia M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 EH3_k127_4426696_0 1123367.C666_14905 4.991e-104 347.0 COG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,2VI8D@28216|Betaproteobacteria,2KVNI@206389|Rhodocyclales 206389|Rhodocyclales S GTPase that plays an essential role in the late steps of ribosome biogenesis der - - ko:K03977 - - - - ko00000,ko03009 - - - KH_dom-like,MMR_HSR1 EH3_k127_4426696_1 292415.Tbd_2162 3.853e-50 188.0 COG2230@1|root,COG2230@2|Bacteria 2|Bacteria M cyclopropane-fatty-acyl-phospholipid synthase - - 2.1.1.265 ko:K16868 - - - - ko00000,ko01000 - - - Methyltransf_25 EH3_k127_4426696_2 1454004.AW11_03150 9.575e-41 153.0 COG1520@1|root,COG1520@2|Bacteria,1MXIJ@1224|Proteobacteria,2VHH5@28216|Betaproteobacteria,1KQ3U@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamB - - ko:K17713 - - - - ko00000,ko02000 1.B.33.1 - - PQQ_2,PQQ_3 EH3_k127_4434428_0 640511.BC1002_5549 4.307e-90 312.0 COG3115@1|root,COG3115@2|Bacteria,1QVM5@1224|Proteobacteria,2WI17@28216|Betaproteobacteria,1KG8X@119060|Burkholderiaceae 28216|Betaproteobacteria D Protein of unknown function (DUF3300) - - - - - - - - - - - - DUF3300 EH3_k127_4434428_2 264198.Reut_A3335 6.076e-19 93.0 2E5SP@1|root,330H2@2|Bacteria,1Q9TF@1224|Proteobacteria,2WDRU@28216|Betaproteobacteria,1KAVW@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - Gly-zipper_YMGG EH3_k127_4434428_3 614083.AWQR01000009_gene603 6.35e-16 85.0 2CD1X@1|root,345HP@2|Bacteria,1P1WD@1224|Proteobacteria,2W4MV@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4434428_1 1132855.KB913035_gene191 6.82e-60 219.0 COG2982@1|root,COG2982@2|Bacteria,1NVUY@1224|Proteobacteria,2VI5J@28216|Betaproteobacteria,2KMI1@206350|Nitrosomonadales 206350|Nitrosomonadales M PFAM AsmA family - - - ko:K07289 - - - - ko00000 - - - AsmA,AsmA_2 EH3_k127_4448004_0 1216976.AX27061_1289 0.0 1044.0 COG1185@1|root,COG1185@2|Bacteria,1MVB9@1224|Proteobacteria,2VI1P@28216|Betaproteobacteria,3T3BV@506|Alcaligenaceae 28216|Betaproteobacteria J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction pnp - 2.7.7.8 ko:K00962 ko00230,ko00240,ko03018,map00230,map00240,map03018 M00394 R00437,R00438,R00439,R00440 RC02795 ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 - - - KH_1,PNPase,RNase_PH,RNase_PH_C,S1 EH3_k127_4448004_8 1159870.KB907784_gene219 2.1e-38 148.0 COG0184@1|root,COG0184@2|Bacteria,1MZ2W@1224|Proteobacteria,2VU1D@28216|Betaproteobacteria,3T465@506|Alcaligenaceae 28216|Betaproteobacteria J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome rpsO - - ko:K02956 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S15 EH3_k127_4448004_2 535289.Dtpsy_1948 3.765e-264 821.0 COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2VI4G@28216|Betaproteobacteria,4AAW6@80864|Comamonadaceae 28216|Betaproteobacteria E Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) leuA - 2.3.3.13 ko:K01649 ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230 M00432 R01213 RC00004,RC00470,RC02754 br01601,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like,LeuA_dimer EH3_k127_4448004_4 977880.RALTA_A1023 8.122e-117 381.0 COG1183@1|root,COG1183@2|Bacteria,1MWD9@1224|Proteobacteria,2VIME@28216|Betaproteobacteria,1JZXY@119060|Burkholderiaceae 28216|Betaproteobacteria I Belongs to the CDP-alcohol phosphatidyltransferase class-I family pssA - 2.7.8.8 ko:K17103 ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110 M00093 R01800 RC00002,RC00017,RC02795 ko00000,ko00001,ko00002,ko01000 - - - CDP-OH_P_transf EH3_k127_4448004_5 93220.LV28_04610 4.299e-97 321.0 COG0688@1|root,COG0688@2|Bacteria,1MW45@1224|Proteobacteria,2VHHT@28216|Betaproteobacteria,1K5AZ@119060|Burkholderiaceae 28216|Betaproteobacteria I Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) psd - 4.1.1.65 ko:K01613 ko00564,ko01100,ko01110,map00564,map01100,map01110 M00093 R02055 RC00299 ko00000,ko00001,ko00002,ko01000 - - - PS_Dcarbxylase EH3_k127_4448004_9 204773.HEAR1240 2.866e-27 130.0 COG3471@1|root,COG3471@2|Bacteria,1R3M6@1224|Proteobacteria,2VXGI@28216|Betaproteobacteria,4796Y@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF541) - - - - - - - - - - - - SIMPL EH3_k127_4448004_7 443143.GM18_0461 7.404e-61 218.0 COG2197@1|root,COG2197@2|Bacteria,1NQH7@1224|Proteobacteria,42ZR0@68525|delta/epsilon subdivisions,2WT3B@28221|Deltaproteobacteria,43UQ9@69541|Desulfuromonadales 28221|Deltaproteobacteria K helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg EH3_k127_4448004_3 1218074.BAXZ01000011_gene2727 4.556e-178 564.0 COG0059@1|root,COG0059@2|Bacteria,1MV7M@1224|Proteobacteria,2VIQ5@28216|Betaproteobacteria,1K0YZ@119060|Burkholderiaceae 28216|Betaproteobacteria H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate ilvC - 1.1.1.86 ko:K00053 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R03051,R04439,R04440,R05068,R05069,R05071 RC00726,RC00836,RC00837,RC01726 ko00000,ko00001,ko00002,ko01000 - - - IlvC,IlvN EH3_k127_4448004_6 1265502.KB905935_gene3132 6.237e-81 285.0 COG0440@1|root,COG0440@2|Bacteria,1RAGN@1224|Proteobacteria,2VH1H@28216|Betaproteobacteria,4AB4H@80864|Comamonadaceae 28216|Betaproteobacteria E TIGRFAM Acetolactate synthase, small subunit ilvH GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 ko:K01653 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - ACT_5,ALS_ss_C EH3_k127_4448004_1 1095769.CAHF01000011_gene2515 1.417e-307 947.0 COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2VJ55@28216|Betaproteobacteria,472GV@75682|Oxalobacteraceae 28216|Betaproteobacteria H Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ilvB - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N EH3_k127_4449213_2 1123367.C666_08430 3.771e-31 124.0 COG2935@1|root,COG2935@2|Bacteria,1MW62@1224|Proteobacteria,2VJ8E@28216|Betaproteobacteria,2KVBA@206389|Rhodocyclales 206389|Rhodocyclales O May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate ate - 2.3.2.29 ko:K21420 - - R11547,R11548 RC00064 ko00000,ko01000 - - - ATE_C,ATE_N EH3_k127_4449213_1 640081.Dsui_2972 1.615e-100 337.0 COG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,2VIUV@28216|Betaproteobacteria,2KV37@206389|Rhodocyclales 206389|Rhodocyclales O Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine aat - 2.3.2.6 ko:K00684 - - R03813,R11443,R11444 RC00055,RC00064 ko00000,ko01000 - - - Leu_Phe_trans EH3_k127_4449213_0 85643.Tmz1t_2590 6.737e-155 494.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VHGM@28216|Betaproteobacteria,2KVQ7@206389|Rhodocyclales 206389|Rhodocyclales P Belongs to the ABC transporter superfamily - - 3.6.3.30 ko:K02010 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.10 - - ABC_tran,TOBE_2 EH3_k127_4471851_6 522306.CAP2UW1_4228 2.471e-95 316.0 COG0695@1|root,COG0695@2|Bacteria,1QVSK@1224|Proteobacteria,2VH4R@28216|Betaproteobacteria 28216|Betaproteobacteria O PFAM Glutaredoxin - - - - - - - - - - - - Glutaredoxin EH3_k127_4471851_1 1121861.KB899911_gene1383 1.049e-184 592.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TQQH@28211|Alphaproteobacteria 1224|Proteobacteria E ABC-type dipeptide transport system periplasmic component - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 EH3_k127_4471851_2 1121861.KB899911_gene1384 2.889e-180 582.0 COG5476@1|root,COG5476@2|Bacteria,1NS9S@1224|Proteobacteria 1224|Proteobacteria S Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - - - - - - - - - - DUF1485,MlrC_C EH3_k127_4471851_3 983917.RGE_10580 4.389e-157 508.0 COG0477@1|root,COG2814@2|Bacteria,1R3YS@1224|Proteobacteria,2VQBS@28216|Betaproteobacteria,1KNDV@119065|unclassified Burkholderiales 28216|Betaproteobacteria EGP Transmembrane secretion effector - - - - - - - - - - - - MFS_1 EH3_k127_4471851_7 375286.mma_3180 5.925e-80 285.0 COG0730@1|root,COG0730@2|Bacteria,1R3V4@1224|Proteobacteria,2VKXN@28216|Betaproteobacteria,474AF@75682|Oxalobacteraceae 28216|Betaproteobacteria S Sulfite exporter TauE/SafE - - - ko:K07090 - - - - ko00000 - - - TauE EH3_k127_4471851_5 1038862.KB893854_gene51 9.747e-98 347.0 COG0457@1|root,COG0457@2|Bacteria,1N01S@1224|Proteobacteria,2TSR4@28211|Alphaproteobacteria,3K3I1@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S COG0457 FOG TPR repeat - - - - - - - - - - - - - EH3_k127_4471851_0 342113.DM82_4058 7.075e-199 628.0 COG1071@1|root,COG1071@2|Bacteria,1MU5R@1224|Proteobacteria,2VNZH@28216|Betaproteobacteria,1K12G@119060|Burkholderiaceae 28216|Betaproteobacteria C e1 component (alpha subunit) bkdA1 - 1.2.4.4 ko:K00166 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,OxoDH_E1alpha_N EH3_k127_4471851_4 296591.Bpro_0274 6.451e-141 450.0 COG0022@1|root,COG0022@2|Bacteria,1R8KB@1224|Proteobacteria,2VKQ0@28216|Betaproteobacteria,4ACZ7@80864|Comamonadaceae 28216|Betaproteobacteria C Transketolase, C-terminal domain bkdA2 - 1.2.4.4 ko:K00167 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C EH3_k127_4487354_2 1304883.KI912532_gene3187 4.259e-27 113.0 COG0848@1|root,COG0848@2|Bacteria,1N0ZA@1224|Proteobacteria,2VUF4@28216|Betaproteobacteria,2KWV6@206389|Rhodocyclales 206389|Rhodocyclales U Biopolymer transport protein - - - ko:K03559 - - - - ko00000,ko02000 1.A.30.2.1 - - ExbD EH3_k127_4487354_0 640081.Dsui_3267 6.604e-87 291.0 COG0811@1|root,COG0811@2|Bacteria,1QNJ1@1224|Proteobacteria,2VITY@28216|Betaproteobacteria,2KV31@206389|Rhodocyclales 206389|Rhodocyclales U MotA TolQ ExbB proton channel - - - ko:K03561 - - - - ko00000,ko02000 1.A.30.2.1 - - MotA_ExbB EH3_k127_4487354_3 1148.1653503 1.192e-23 117.0 COG2214@1|root,COG2214@2|Bacteria,1GABC@1117|Cyanobacteria 1117|Cyanobacteria O Heat shock protein DnaJ domain protein - - - - - - - - - - - - - EH3_k127_4487354_1 411473.RUMCAL_02137 1.948e-37 158.0 COG0790@1|root,COG0790@2|Bacteria,1TS5X@1239|Firmicutes,248TS@186801|Clostridia,3WIZE@541000|Ruminococcaceae 186801|Clostridia L Sel1-like repeats. - - - ko:K07126 - - - - ko00000 - - - Sel1 EH3_k127_4490347_2 1157708.KB907457_gene2586 6.808e-54 199.0 COG1073@1|root,COG1073@2|Bacteria,1RFAF@1224|Proteobacteria,2WERU@28216|Betaproteobacteria,4AF1F@80864|Comamonadaceae 28216|Betaproteobacteria S Prolyl oligopeptidase family - - - ko:K06889 - - - - ko00000 - - - Hydrolase_4 EH3_k127_4490347_0 543913.D521_0420 1.164e-92 315.0 COG1275@1|root,COG1275@2|Bacteria,1MVPG@1224|Proteobacteria,2VMUX@28216|Betaproteobacteria 28216|Betaproteobacteria P C4-dicarboxylate transporter malic acid transport protein tdt - - ko:K03304 - - - - ko00000,ko02000 2.A.16.1 - - SLAC1 EH3_k127_4490347_1 1121015.N789_05490 8.395e-67 229.0 COG0403@1|root,COG1003@1|root,COG0403@2|Bacteria,COG1003@2|Bacteria,1MUDP@1224|Proteobacteria,1RND3@1236|Gammaproteobacteria,1X35C@135614|Xanthomonadales 135614|Xanthomonadales E The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor gcvP - 1.4.4.2 ko:K00281,ko:K00283 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko00002,ko01000 - - - GDC-P EH3_k127_4491902_3 62928.azo2196 5.428e-35 135.0 COG2908@1|root,COG2908@2|Bacteria,1MVKD@1224|Proteobacteria,2VHU3@28216|Betaproteobacteria,2KUX6@206389|Rhodocyclales 206389|Rhodocyclales S Calcineurin-like phosphoesterase superfamily domain - - - - - - - - - - - - Metallophos,Metallophos_2 EH3_k127_4491902_1 497321.C664_18262 3.707e-100 340.0 COG3176@1|root,COG3176@2|Bacteria,1MWIM@1224|Proteobacteria,2VH4B@28216|Betaproteobacteria,2KU7J@206389|Rhodocyclales 206389|Rhodocyclales S Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_5 EH3_k127_4491902_2 1454004.AW11_00816 2.232e-48 183.0 2D92U@1|root,32TSH@2|Bacteria,1N0VE@1224|Proteobacteria,2VVG8@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4491902_4 62928.azo0016 0.000314 48.0 2C8AW@1|root,33ACI@2|Bacteria,1NGTZ@1224|Proteobacteria,2VXMK@28216|Betaproteobacteria,2KXIX@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - EH3_k127_4491902_0 85643.Tmz1t_1738 8.976e-157 499.0 COG1109@1|root,COG1109@2|Bacteria,1MU24@1224|Proteobacteria,2VI3U@28216|Betaproteobacteria,2KUMC@206389|Rhodocyclales 206389|Rhodocyclales G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate glmM - 5.4.2.10 ko:K03431 ko00520,ko01100,ko01130,map00520,map01100,map01130 - R02060 RC00408 ko00000,ko00001,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV EH3_k127_4492902_2 944435.AXAJ01000021_gene4920 2.555e-64 223.0 COG0745@1|root,COG0745@2|Bacteria,1MY5Y@1224|Proteobacteria,2VI0W@28216|Betaproteobacteria,1K3A8@119060|Burkholderiaceae 28216|Betaproteobacteria K response regulator basR_3 - - ko:K02483,ko:K07666,ko:K07774 ko02020,ko02024,map02020,map02024 M00453,M00457 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C EH3_k127_4492902_1 264198.Reut_A0525 1.75e-152 497.0 COG0642@1|root,COG0642@2|Bacteria,1QTSX@1224|Proteobacteria,2VI80@28216|Betaproteobacteria,1K48Q@119060|Burkholderiaceae 28216|Betaproteobacteria T Histidine kinase - - 2.7.13.3 ko:K07649 ko02020,map02020 M00457 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - 2CSK_N,HATPase_c,HisKA EH3_k127_4492902_3 795666.MW7_2325 9.261e-09 61.0 2EEJ7@1|root,33BRS@2|Bacteria,1NINM@1224|Proteobacteria,2VXV8@28216|Betaproteobacteria,1KHGT@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4492902_0 93220.LV28_10865 4.983e-174 549.0 COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,2VHQM@28216|Betaproteobacteria,1K092@119060|Burkholderiaceae 28216|Betaproteobacteria J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB - 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 EH3_k127_4503433_3 388051.AUFE01000006_gene1246 1.455e-71 244.0 COG0217@1|root,COG0217@2|Bacteria,1MW3X@1224|Proteobacteria,2VIA5@28216|Betaproteobacteria,1K1P4@119060|Burkholderiaceae 28216|Betaproteobacteria K transcriptional regulatory protein yebC - - - - - - - - - - - Transcrip_reg EH3_k127_4503433_0 1366050.N234_04275 1.336e-194 623.0 COG0151@1|root,COG0151@2|Bacteria,1MUAH@1224|Proteobacteria,2VH9J@28216|Betaproteobacteria,1K12P@119060|Burkholderiaceae 28216|Betaproteobacteria F Belongs to the GARS family purD - 6.3.4.13 ko:K01945 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04144 RC00090,RC00166 ko00000,ko00001,ko00002,ko01000 - - - GARS_A,GARS_C,GARS_N EH3_k127_4503433_2 1380356.JNIK01000003_gene1188 1.861e-132 446.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,2GMMM@201174|Actinobacteria,4EUVZ@85013|Frankiales 201174|Actinobacteria EU Prolyl oligopeptidase family - - - - - - - - - - - - PD40,Peptidase_S9 EH3_k127_4503433_1 864051.BurJ1DRAFT_3776 1.583e-154 493.0 COG0408@1|root,COG0408@2|Bacteria,1MWMF@1224|Proteobacteria,2VIN4@28216|Betaproteobacteria,1KJMH@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX hemF GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 ko:K00228 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03220 RC00884 ko00000,ko00001,ko00002,ko01000 - - - Coprogen_oxidas EH3_k127_4503433_6 1203554.HMPREF1476_02069 2.527e-42 168.0 COG1057@1|root,COG1057@2|Bacteria,1RD0J@1224|Proteobacteria,2VSQ7@28216|Betaproteobacteria,4PR32@995019|Sutterellaceae 28216|Betaproteobacteria H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) nadD - 2.7.7.18 ko:K00969 ko00760,ko01100,map00760,map01100 M00115 R00137,R03005 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_like EH3_k127_4503433_4 1218084.BBJK01000055_gene4206 3.281e-51 187.0 COG0799@1|root,COG0799@2|Bacteria,1MZEF@1224|Proteobacteria,2VRRV@28216|Betaproteobacteria,1K6ZB@119060|Burkholderiaceae 28216|Betaproteobacteria J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation rsfS - - ko:K09710 - - - - ko00000,ko03009 - - - RsfS EH3_k127_4503433_5 742823.HMPREF9465_00425 7.928e-50 183.0 COG1576@1|root,COG1576@2|Bacteria,1R9Z2@1224|Proteobacteria,2VQ2M@28216|Betaproteobacteria,4PR11@995019|Sutterellaceae 28216|Betaproteobacteria J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA rlmH - 2.1.1.177 ko:K00783 - - - - ko00000,ko01000,ko03009 - - - SPOUT_MTase EH3_k127_4503433_7 1349767.GJA_976 6.715e-28 117.0 COG0424@1|root,COG0424@2|Bacteria,1RH6H@1224|Proteobacteria,2VQC3@28216|Betaproteobacteria,4730D@75682|Oxalobacteraceae 28216|Betaproteobacteria D Maf-like protein maf - - ko:K06287 - - - - ko00000 - - - Maf EH3_k127_4508169_5 1415780.JPOG01000001_gene1277 8.739e-34 133.0 COG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,1RQJX@1236|Gammaproteobacteria,1XA0C@135614|Xanthomonadales 135614|Xanthomonadales Q Protein of unknown function (DUF1298) - - - - - - - - - - - - DUF1298,WES_acyltransf EH3_k127_4508169_3 1454004.AW11_03519 1.503e-43 168.0 COG1396@1|root,COG1396@2|Bacteria,1R0QM@1224|Proteobacteria 1224|Proteobacteria K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - - EH3_k127_4508169_6 1499502.EV12_0298 1.948e-29 133.0 COG2370@1|root,COG2370@2|Bacteria 2|Bacteria O cobalamin-transporting ATPase activity - - - - - - - - - - - - HupE_UreJ,NicO EH3_k127_4508169_1 1496688.ER33_07210 1.621e-68 251.0 COG2370@1|root,COG2370@2|Bacteria,1G89Z@1117|Cyanobacteria 1117|Cyanobacteria O Hydrogenase urease accessory protein - - - ko:K03192 - - - - ko00000 - - - HupE_UreJ EH3_k127_4508169_0 1499502.EV12_0300 3.79e-97 341.0 COG2370@1|root,COG2370@2|Bacteria,1G65K@1117|Cyanobacteria 1117|Cyanobacteria O HupE / UreJ protein - - - - - - - - - - - - HupE_UreJ_2 EH3_k127_4508169_2 1532558.JL39_01670 3.308e-65 237.0 COG0760@1|root,COG0760@2|Bacteria,1R4ZR@1224|Proteobacteria,2U874@28211|Alphaproteobacteria,4B9DE@82115|Rhizobiaceae 28211|Alphaproteobacteria O PPIC-type PPIASE domain - - 5.2.1.8 ko:K03769 - - - - ko00000,ko01000,ko03110 - - - Rotamase_2 EH3_k127_4508169_7 1041146.ATZB01000008_gene2191 6.985e-22 105.0 2DHNV@1|root,300EI@2|Bacteria,1PQR7@1224|Proteobacteria,2V33F@28211|Alphaproteobacteria,4BK3B@82115|Rhizobiaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4508169_4 1283300.ATXB01000001_gene392 5.125e-38 142.0 28HMZ@1|root,2Z7WD@2|Bacteria,1MU3Q@1224|Proteobacteria,1RRUM@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Protein of unknown function (DUF3604) - - - - - - - - - - - - DUF3604 EH3_k127_4513089_1 159450.NH14_09610 9.277e-76 254.0 COG0665@1|root,COG0665@2|Bacteria,1MVM6@1224|Proteobacteria,2VKCE@28216|Betaproteobacteria,1KH0A@119060|Burkholderiaceae 28216|Betaproteobacteria E FAD dependent oxidoreductase - - 1.4.99.5,1.5.3.1 ko:K00303,ko:K10816 ko00260,ko00460,ko01100,ko01110,map00260,map00460,map01100,map01110 - R00374,R00610,R05704 RC00060,RC00557,RC02808 ko00000,ko00001,ko01000,ko02042 - - - DAO EH3_k127_4513089_2 1000565.METUNv1_03596 1.304e-42 157.0 COG4311@1|root,COG4311@2|Bacteria,1NA4N@1224|Proteobacteria,2VX6V@28216|Betaproteobacteria 28216|Betaproteobacteria E PFAM Sarcosine oxidase, delta subunit, heterotetrameric - - 1.5.3.1 ko:K00304 ko00260,ko01100,map00260,map01100 - R00610 RC00060,RC00557 ko00000,ko00001,ko01000 - - - SoxD EH3_k127_4513089_0 1218084.BBJK01000021_gene2266 9.797e-318 987.0 COG0404@1|root,COG0446@1|root,COG0404@2|Bacteria,COG0446@2|Bacteria,1MVEK@1224|Proteobacteria,2VK5U@28216|Betaproteobacteria,1KD3N@119060|Burkholderiaceae 28216|Betaproteobacteria H Sarcosine oxidase, gamma subunit family - - 1.5.3.1 ko:K00302 ko00260,ko01100,map00260,map01100 - R00610 RC00060,RC00557 ko00000,ko00001,ko01000 - - - Fer2_4,GCV_T,GCV_T_C,Pyr_redox_2 EH3_k127_4513487_2 1095769.CAHF01000008_gene3581 1.54e-56 214.0 COG2912@1|root,COG2912@2|Bacteria,1MVJQ@1224|Proteobacteria,2VMIR@28216|Betaproteobacteria,473SV@75682|Oxalobacteraceae 28216|Betaproteobacteria S Transglutaminase-like superfamily - - - - - - - - - - - - TPR_9,Transglut_core2 EH3_k127_4513487_0 1095769.CAHF01000008_gene3582 5.467e-175 565.0 COG0728@1|root,COG0728@2|Bacteria,1MUH0@1224|Proteobacteria,2VHTQ@28216|Betaproteobacteria,472ZE@75682|Oxalobacteraceae 28216|Betaproteobacteria U Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane murJ - - ko:K03980 - - - - ko00000,ko01011,ko02000 2.A.66.4 - - MVIN EH3_k127_4513487_4 762966.HMPREF9439_02242 9.335e-21 94.0 COG0268@1|root,COG0268@2|Bacteria,1MZ94@1224|Proteobacteria,2VTYY@28216|Betaproteobacteria,4PR9X@995019|Sutterellaceae 28216|Betaproteobacteria J Binds directly to 16S ribosomal RNA rpsT - - ko:K02968 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S20p EH3_k127_4513487_3 864051.BurJ1DRAFT_3109 5.284e-37 149.0 COG0454@1|root,COG0456@2|Bacteria,1N7JM@1224|Proteobacteria,2VU1F@28216|Betaproteobacteria,1KM0F@119065|unclassified Burkholderiales 28216|Betaproteobacteria K Protein of unknown function (DUF3579) - - - - - - - - - - - - DUF3579 EH3_k127_4513487_1 1266925.JHVX01000004_gene1140 5.553e-146 473.0 COG1982@1|root,COG1982@2|Bacteria,1MWK4@1224|Proteobacteria,2VIJQ@28216|Betaproteobacteria,372U6@32003|Nitrosomonadales 28216|Betaproteobacteria E Orn/Lys/Arg decarboxylase, C-terminal domain - - 4.1.1.19 ko:K01583 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - OKR_DC_1,OKR_DC_1_C EH3_k127_4554554_1 1156935.QWE_08651 2.894e-30 124.0 2E46S@1|root,32Z2Q@2|Bacteria,1N7X1@1224|Proteobacteria,2V2ZJ@28211|Alphaproteobacteria,4BJWR@82115|Rhizobiaceae 28211|Alphaproteobacteria S manually curated - - - - - - - - - - - - - EH3_k127_4554554_2 946483.Cenrod_0593 1.675e-13 72.0 2E6WU@1|root,331GA@2|Bacteria,1N9K9@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - EH3_k127_4554554_0 1121033.AUCF01000008_gene5689 3.635e-152 493.0 COG0260@1|root,COG0260@2|Bacteria,1MUIN@1224|Proteobacteria,2TSI6@28211|Alphaproteobacteria,2JPVI@204441|Rhodospirillales 204441|Rhodospirillales E Belongs to the peptidase M17 family pepB - 3.4.11.1 ko:K01255 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M17 EH3_k127_4565012_0 640081.Dsui_3384 1.351e-201 644.0 COG0475@1|root,COG0490@1|root,COG1226@1|root,COG0475@2|Bacteria,COG0490@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,2VHQQ@28216|Betaproteobacteria,2KYHV@206389|Rhodocyclales 206389|Rhodocyclales P Sodium/hydrogen exchanger family - - - ko:K03455 - - - - ko00000 2.A.37 - - Na_H_Exchanger,TrkA_N EH3_k127_4565012_1 76114.ebA4052 7.358e-46 168.0 COG1556@1|root,COG1556@2|Bacteria,1R4TE@1224|Proteobacteria,2VJCF@28216|Betaproteobacteria,2KWJC@206389|Rhodocyclales 206389|Rhodocyclales S LUD domain - - - ko:K00782 - - - - ko00000 - - - LUD_dom EH3_k127_4584258_15 224911.27350827 0.0004605 44.0 2F0SV@1|root,33TUX@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - EH3_k127_4584258_5 257310.BB0316 2.792e-115 380.0 COG0142@1|root,COG0142@2|Bacteria,1MUK6@1224|Proteobacteria,2VHX4@28216|Betaproteobacteria,3T2UQ@506|Alcaligenaceae 28216|Betaproteobacteria H Belongs to the FPP GGPP synthase family ispB - 2.5.1.90 ko:K02523 ko00900,ko01110,map00900,map01110 - R09248 RC00279 ko00000,ko00001,ko01000,ko01006 - - - polyprenyl_synt EH3_k127_4584258_12 667632.KB890210_gene4955 1.723e-38 152.0 COG0261@1|root,COG0261@2|Bacteria,1MZEW@1224|Proteobacteria,2VSHZ@28216|Betaproteobacteria,1K7RK@119060|Burkholderiaceae 28216|Betaproteobacteria J This protein binds to 23S rRNA in the presence of protein L20 rplU - - ko:K02888 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L21p EH3_k127_4584258_13 1437824.BN940_17841 8.032e-36 141.0 COG0211@1|root,COG0211@2|Bacteria,1MZGH@1224|Proteobacteria,2VU4W@28216|Betaproteobacteria,3T4EC@506|Alcaligenaceae 28216|Betaproteobacteria J Belongs to the bacterial ribosomal protein bL27 family rpmA - - ko:K02899 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27 EH3_k127_4584258_4 1123354.AUDR01000017_gene89 5.27e-153 489.0 COG0536@1|root,COG0536@2|Bacteria,1MUGZ@1224|Proteobacteria,2VIM2@28216|Betaproteobacteria,1KRYN@119069|Hydrogenophilales 119069|Hydrogenophilales S GTP1/OBG - - - ko:K03979 - - - - ko00000,ko01000,ko03009 - - - GTP1_OBG,MMR_HSR1 EH3_k127_4584258_2 264198.Reut_A2955 1.789e-165 529.0 COG0263@1|root,COG0263@2|Bacteria,1MUBG@1224|Proteobacteria,2VISR@28216|Betaproteobacteria,1K327@119060|Burkholderiaceae 28216|Betaproteobacteria F Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate proB - 2.7.2.11 ko:K00931 ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230 M00015 R00239 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,PUA EH3_k127_4584258_8 1000565.METUNv1_02889 1.167e-84 285.0 COG0494@1|root,COG0494@2|Bacteria,1RDGJ@1224|Proteobacteria,2VIDX@28216|Betaproteobacteria,2KU7I@206389|Rhodocyclales 206389|Rhodocyclales L Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage nudH - - ko:K08311 ko03018,map03018 - R10816 RC00002 ko00000,ko00001,ko01000,ko03019 - - - NUDIX EH3_k127_4584258_0 983917.RGE_42500 4.948e-278 866.0 COG0442@1|root,COG0442@2|Bacteria,1MU7E@1224|Proteobacteria,2VGZ9@28216|Betaproteobacteria,1KK5E@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS proS - 6.1.1.15 ko:K01881 ko00970,map00970 M00359,M00360 R03661 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_2b,tRNA_edit EH3_k127_4584258_9 1265502.KB905938_gene2501 5.67e-70 244.0 COG0741@1|root,COG0741@2|Bacteria,1R666@1224|Proteobacteria,2VHI4@28216|Betaproteobacteria,4A9JX@80864|Comamonadaceae 28216|Betaproteobacteria M PFAM Lytic transglycosylase catalytic - - - - - - - - - - - - SLT EH3_k127_4584258_1 1095769.CAHF01000014_gene2881 1.386e-208 657.0 COG0541@1|root,COG0541@2|Bacteria,1MVIA@1224|Proteobacteria,2VJ3W@28216|Betaproteobacteria,472TQ@75682|Oxalobacteraceae 28216|Betaproteobacteria U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components ffh - 3.6.5.4 ko:K03106 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko01000,ko02044 3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9 - - SRP54,SRP54_N,SRP_SPB EH3_k127_4584258_11 1163617.SCD_n02463 5.299e-60 218.0 COG4137@1|root,COG4137@2|Bacteria,1R3YD@1224|Proteobacteria,2VK0H@28216|Betaproteobacteria 28216|Betaproteobacteria S Cytochrome C assembly protein ypjD - - - - - - - - - - - Cytochrom_C_asm EH3_k127_4584258_14 1288494.EBAPG3_16220 3.185e-12 73.0 2EHK0@1|root,33BBV@2|Bacteria,1NGIK@1224|Proteobacteria,2VXN8@28216|Betaproteobacteria,373QW@32003|Nitrosomonadales 28216|Betaproteobacteria - - - - - ko:K06950 - - - - ko00000 - - - - EH3_k127_4584258_6 1500894.JQNN01000001_gene2969 6.12e-94 330.0 COG4191@1|root,COG4191@2|Bacteria,1QU7R@1224|Proteobacteria,2VICU@28216|Betaproteobacteria,473E9@75682|Oxalobacteraceae 28216|Betaproteobacteria T His Kinase A (phosphoacceptor) domain pilS - 2.7.13.3 ko:K02668,ko:K10125 ko02020,map02020 M00501,M00504 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - HATPase_c,HisKA,PAS_8 EH3_k127_4584258_3 1095769.CAHF01000014_gene2878 2.147e-161 521.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2VHSB@28216|Betaproteobacteria,472RM@75682|Oxalobacteraceae 28216|Betaproteobacteria T Sigma-54 interaction domain pilR - - ko:K02667 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - HTH_8,Response_reg,Sigma54_activat EH3_k127_4584258_10 795666.MW7_3138 5.958e-65 230.0 COG3023@1|root,COG3023@2|Bacteria,1RDHU@1224|Proteobacteria,2VR5A@28216|Betaproteobacteria,1K2HB@119060|Burkholderiaceae 28216|Betaproteobacteria V PFAM N-acetylmuramoyl-L-alanine amidase family 2 ampD GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 ko:K03806 - - - - ko00000,ko01000,ko01011 - - - Amidase_2 EH3_k127_4584258_7 1095769.CAHF01000014_gene2876 6.76e-87 297.0 COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,2VJIV@28216|Betaproteobacteria,472GD@75682|Oxalobacteraceae 28216|Betaproteobacteria F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides nrdA GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - ATP-cone,Ribonuc_red_lgC,Ribonuc_red_lgN EH3_k127_4602413_2 614083.AWQR01000025_gene3701 4.875e-38 145.0 COG0778@1|root,COG0778@2|Bacteria,1NTK9@1224|Proteobacteria,2VMWD@28216|Betaproteobacteria 28216|Betaproteobacteria C Nitroreductase - - - - - - - - - - - - Nitroreductase EH3_k127_4602413_1 1192124.LIG30_2998 3.172e-54 206.0 arCOG10456@1|root,2ZA6T@2|Bacteria,1R4VS@1224|Proteobacteria,2VQRB@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_4602413_0 251221.35212959 1.129e-137 450.0 COG3268@1|root,COG3268@2|Bacteria,1G3XG@1117|Cyanobacteria 1117|Cyanobacteria S Saccharopine dehydrogenase - - - - - - - - - - - - Sacchrp_dh_NADP EH3_k127_4602413_4 644801.Psest_4183 0.0003927 49.0 2AQM9@1|root,31FUA@2|Bacteria,1QDJV@1224|Proteobacteria,1T9MP@1236|Gammaproteobacteria,1Z37B@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria S PilZ domain - - - - - - - - - - - - PilZ EH3_k127_4602413_3 1205680.CAKO01000010_gene3929 2.16e-16 83.0 COG3618@1|root,COG3618@2|Bacteria,1QWWJ@1224|Proteobacteria,2TV8V@28211|Alphaproteobacteria,2JVWZ@204441|Rhodospirillales 204441|Rhodospirillales S Amidohydrolase - - - - - - - - - - - - - EH3_k127_4604084_7 977880.RALTA_A0474 3.603e-67 249.0 COG1451@1|root,COG1451@2|Bacteria,1MXZU@1224|Proteobacteria,2VNC5@28216|Betaproteobacteria,1K1N3@119060|Burkholderiaceae 28216|Betaproteobacteria S Metal-dependent hydrolase - - - ko:K07043 - - - - ko00000 - - - DUF45 EH3_k127_4604084_4 1159870.KB907784_gene517 6.929e-84 284.0 COG0204@1|root,COG0204@2|Bacteria,1MY51@1224|Proteobacteria,2VNAX@28216|Betaproteobacteria,3T34W@506|Alcaligenaceae 28216|Betaproteobacteria I Acyltransferase nlaB - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase EH3_k127_4604084_0 1144342.PMI40_04175 6.53e-243 768.0 COG0751@1|root,COG0751@2|Bacteria,1MV2F@1224|Proteobacteria,2VICG@28216|Betaproteobacteria,472EV@75682|Oxalobacteraceae 28216|Betaproteobacteria J Glycyl-tRNA synthetase beta subunit glyS - 6.1.1.14 ko:K01879 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_1,tRNA_synt_2f EH3_k127_4604084_1 469610.HMPREF0189_01368 1.389e-172 544.0 COG0752@1|root,COG0752@2|Bacteria,1MVCJ@1224|Proteobacteria,2VIQX@28216|Betaproteobacteria,1KKBS@119065|unclassified Burkholderiales 28216|Betaproteobacteria J glycyl-tRNA synthetase alpha subunit glyQ - 6.1.1.14 ko:K01878 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2e EH3_k127_4604084_3 388051.AUFE01000042_gene3433 2.778e-136 467.0 COG0815@1|root,COG0815@2|Bacteria,1MUBU@1224|Proteobacteria,2VH1I@28216|Betaproteobacteria,1K0YM@119060|Burkholderiaceae 28216|Betaproteobacteria M Transfers the fatty acyl group on membrane lipoproteins lnt - - ko:K03820 - - - - ko00000,ko01000 - GT2 - CN_hydrolase EH3_k127_4604084_5 314607.KB13_157 3.184e-80 277.0 COG4535@1|root,COG4535@2|Bacteria,1QTU8@1224|Proteobacteria,2VIU8@28216|Betaproteobacteria,1KPX3@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria P Magnesium and cobalt corC - - ko:K06189 - - - - ko00000,ko02000 9.A.40.1.2 - - CBS,CorC_HlyC EH3_k127_4604084_8 365044.Pnap_0508 3.361e-36 157.0 COG0319@1|root,COG0319@2|Bacteria,1MZ67@1224|Proteobacteria,2VSHV@28216|Betaproteobacteria,4AE4I@80864|Comamonadaceae 28216|Betaproteobacteria J Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA ybeY - - ko:K07042 - - - - ko00000,ko03009 - - - UPF0054 EH3_k127_4604084_2 267608.RSc0530 1.817e-136 441.0 COG1702@1|root,COG1702@2|Bacteria,1MVDV@1224|Proteobacteria,2VH9V@28216|Betaproteobacteria,1K00G@119060|Burkholderiaceae 28216|Betaproteobacteria T PFAM PhoH family protein ybeZ - - ko:K06217 - - - - ko00000 - - - PhoH EH3_k127_4604084_6 1286631.X805_32280 3.124e-67 232.0 COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,2VHQM@28216|Betaproteobacteria,1KIX5@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB - 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 EH3_k127_4611757_0 29581.BW37_04027 2.149e-175 565.0 COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2VH50@28216|Betaproteobacteria,473HI@75682|Oxalobacteraceae 28216|Betaproteobacteria I Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus phbC GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - ko:K03821 ko00650,map00650 - R04254 RC00004 ko00000,ko00001,ko01000 - - - PhaC_N EH3_k127_4611757_1 204773.HEAR1925 1.577e-70 245.0 COG1496@1|root,COG1496@2|Bacteria,1MW2H@1224|Proteobacteria,2VKD4@28216|Betaproteobacteria,4726N@75682|Oxalobacteraceae 28216|Betaproteobacteria S Belongs to the multicopper oxidase YfiH RL5 family yfiH - - ko:K05810 - - - - ko00000,ko01000 - - - Cu-oxidase_4 EH3_k127_4629049_2 159087.Daro_0035 4.272e-121 401.0 COG0477@1|root,COG2814@2|Bacteria,1QUY6@1224|Proteobacteria,2VNN5@28216|Betaproteobacteria,2KZPQ@206389|Rhodocyclales 206389|Rhodocyclales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_4629049_0 864069.MicloDRAFT_00028010 2.701e-297 926.0 COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,2TQSC@28211|Alphaproteobacteria,1JZ7I@119045|Methylobacteriaceae 28211|Alphaproteobacteria L UvrD/REP helicase N-terminal domain uvrD - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C EH3_k127_4629049_1 987059.RBXJA2T_05258 1.456e-122 398.0 COG1902@1|root,COG1902@2|Bacteria,1MVIX@1224|Proteobacteria,2VH2S@28216|Betaproteobacteria,1KJIJ@119065|unclassified Burkholderiales 28216|Betaproteobacteria C NADH flavin oxidoreductase NADH oxidase nemA GO:0000003,GO:0000302,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009607,GO:0009620,GO:0009694,GO:0009695,GO:0009791,GO:0009908,GO:0009987,GO:0010035,GO:0010193,GO:0010817,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016629,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0042221,GO:0042445,GO:0042446,GO:0042493,GO:0042579,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046677,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0055114,GO:0061458,GO:0065007,GO:0065008,GO:0071704,GO:0072330,GO:0090567,GO:0099402,GO:1901576,GO:1901700 - ko:K10680 ko00633,ko01120,map00633,map01120 - R08014,R08017,R08042 RC00250 ko00000,ko00001,ko01000 - - - Oxidored_FMN EH3_k127_4659447_1 204773.HEAR3121 2.507e-232 740.0 COG4796@1|root,COG4796@2|Bacteria,1QTT6@1224|Proteobacteria,2VHY4@28216|Betaproteobacteria,472H8@75682|Oxalobacteraceae 28216|Betaproteobacteria U Secretin and TonB N terminus short domain pilQ - - ko:K02666 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - AMIN,STN,Secretin,Secretin_N EH3_k127_4659447_13 375286.mma_3365 2.931e-44 174.0 COG3168@1|root,COG3168@2|Bacteria,1RI6V@1224|Proteobacteria,2VSVR@28216|Betaproteobacteria,4749X@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Pilus assembly protein, PilP pilP - - ko:K02665 - - - - ko00000,ko02035,ko02044 - - - PilP EH3_k127_4659447_8 204773.HEAR3123 2.86e-74 257.0 COG3167@1|root,COG3167@2|Bacteria,1RBGW@1224|Proteobacteria,2VH68@28216|Betaproteobacteria,473PW@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Pilus assembly protein, PilO pilO - - ko:K02664 - - - - ko00000,ko02035,ko02044 - - - PilO EH3_k127_4659447_12 1095769.CAHF01000003_gene1044 4.525e-52 192.0 COG3166@1|root,COG3166@2|Bacteria,1RF1S@1224|Proteobacteria,2VN9T@28216|Betaproteobacteria,47336@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Fimbrial assembly protein (PilN) pilN - - ko:K02663 - - - - ko00000,ko02035,ko02044 - - - PilN EH3_k127_4659447_5 204773.HEAR3125 1.45e-140 455.0 COG4972@1|root,COG4972@2|Bacteria,1MX8P@1224|Proteobacteria,2VH6W@28216|Betaproteobacteria,472MX@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Type IV pilus assembly protein PilM; pilM - - ko:K02662 - - - - ko00000,ko02035,ko02044 - - - PilM_2 EH3_k127_4659447_0 626418.bglu_1g02980 2.646e-281 887.0 COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,2VHXF@28216|Betaproteobacteria,1K23B@119060|Burkholderiaceae 28216|Betaproteobacteria M penicillin-binding protein 1A mrcA - 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - PCB_OB,Transgly,Transpeptidase EH3_k127_4659447_16 1562701.BBOF01000052_gene1560 2.471e-29 124.0 COG1965@1|root,COG1965@2|Bacteria,1RH9A@1224|Proteobacteria,2VUDA@28216|Betaproteobacteria,1K8TG@119060|Burkholderiaceae 28216|Betaproteobacteria P Belongs to the frataxin family cyaY - - ko:K06202 - - - - ko00000 - - - Frataxin_Cyay EH3_k127_4659447_3 977880.RALTA_A2903 9.567e-166 531.0 COG0019@1|root,COG0019@2|Bacteria,1MUA6@1224|Proteobacteria,2VI3M@28216|Betaproteobacteria,1K0I1@119060|Burkholderiaceae 28216|Betaproteobacteria E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine lysA - 4.1.1.20 ko:K01586 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R00451 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N,Orn_DAP_Arg_deC EH3_k127_4659447_9 1218084.BBJK01000103_gene6461 3.197e-65 237.0 COG2717@1|root,COG2717@2|Bacteria,1RDUP@1224|Proteobacteria,2VRBQ@28216|Betaproteobacteria,1K3TE@119060|Burkholderiaceae 28216|Betaproteobacteria C Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain msrQ - - ko:K17247 - - - - ko00000 - - - Ferric_reduct EH3_k127_4659447_6 1434929.X946_4085 3.117e-128 436.0 COG2041@1|root,COG2041@2|Bacteria,1MUW0@1224|Proteobacteria,2VH08@28216|Betaproteobacteria,1K19W@119060|Burkholderiaceae 28216|Betaproteobacteria C Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide msrP - - ko:K07147 - - - - ko00000,ko01000 - - - Oxidored_molyb EH3_k127_4659447_4 742823.HMPREF9465_00773 1.006e-158 527.0 COG0516@1|root,COG0516@2|Bacteria,1MUJM@1224|Proteobacteria,2VJMM@28216|Betaproteobacteria,4PQBE@995019|Sutterellaceae 28216|Betaproteobacteria F Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides guaC - 1.7.1.7 ko:K00364 ko00230,map00230 - R01134 RC00457 ko00000,ko00001,ko01000 - - - IMPDH EH3_k127_4659447_10 1286093.C266_01704 3.08e-63 230.0 COG2863@1|root,COG2863@2|Bacteria,1N2NB@1224|Proteobacteria,2VQNZ@28216|Betaproteobacteria,1K1BD@119060|Burkholderiaceae 28216|Betaproteobacteria C PFAM cytochrome c, class I cyc - - - - - - - - - - - Cytochrom_C,Cytochrome_CBB3 EH3_k127_4659447_11 742823.HMPREF9465_00772 1.809e-57 208.0 COG0218@1|root,COG0218@2|Bacteria,1MY3Z@1224|Proteobacteria,2VIKF@28216|Betaproteobacteria,4PQRS@995019|Sutterellaceae 28216|Betaproteobacteria D Necessary for normal cell division and for the maintenance of normal septation engB - - ko:K03978 - - - - ko00000,ko03036 - - - MMR_HSR1 EH3_k127_4659447_2 1192124.LIG30_4047 1.086e-168 536.0 COG0113@1|root,COG0113@2|Bacteria,1MWMW@1224|Proteobacteria,2VHC6@28216|Betaproteobacteria,1K28M@119060|Burkholderiaceae 28216|Betaproteobacteria H Belongs to the ALAD family hemB GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 ko:K01698 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00036 RC00918,RC01781 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ALAD EH3_k127_4659447_7 1005048.CFU_0432 9.067e-95 324.0 COG0598@1|root,COG0598@2|Bacteria,1MX09@1224|Proteobacteria,2VHCH@28216|Betaproteobacteria,472GC@75682|Oxalobacteraceae 28216|Betaproteobacteria P Mediates influx of magnesium ions corA - - ko:K03284 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3 - - CorA EH3_k127_4659447_15 1123487.KB892857_gene2481 1.953e-32 140.0 COG1188@1|root,COG1188@2|Bacteria,1MZR6@1224|Proteobacteria,2VTY8@28216|Betaproteobacteria,2KWX7@206389|Rhodocyclales 206389|Rhodocyclales J COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) - - - ko:K04762 - - - - ko00000,ko03110 - - - S4 EH3_k127_4659447_14 90813.JQMT01000001_gene2001 4.711e-34 144.0 COG0526@1|root,COG0526@2|Bacteria,1RB6H@1224|Proteobacteria,1S2QN@1236|Gammaproteobacteria,460Z2@72273|Thiotrichales 72273|Thiotrichales CO Thioredoxin-like - - - - - - - - - - - - AhpC-TSA,LGT EH3_k127_4698149_2 1121127.JAFA01000004_gene1307 5.297e-18 83.0 COG0828@1|root,COG0828@2|Bacteria,1MZCC@1224|Proteobacteria,2VTZ4@28216|Betaproteobacteria,1KA7U@119060|Burkholderiaceae 28216|Betaproteobacteria J Belongs to the bacterial ribosomal protein bS21 family rpsU - - ko:K02970 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S21 EH3_k127_4698149_1 159450.NH14_22210 1.294e-52 192.0 COG1610@1|root,COG1610@2|Bacteria,1RGZS@1224|Proteobacteria,2VR35@28216|Betaproteobacteria,1K70P@119060|Burkholderiaceae 28216|Betaproteobacteria S Yqey-like protein yqeY - - ko:K09117 - - - - ko00000 - - - YqeY EH3_k127_4698149_0 795666.MW7_3007 3.522e-168 546.0 COG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,2VHI9@28216|Betaproteobacteria,1K36X@119060|Burkholderiaceae 28216|Betaproteobacteria L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication dnaG - - ko:K02316 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB_bind,DnaG_DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2 EH3_k127_4744382_0 864051.BurJ1DRAFT_3989 5.256e-272 846.0 COG3960@1|root,COG3960@2|Bacteria,1MV88@1224|Proteobacteria,2VHT9@28216|Betaproteobacteria,1KK12@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Belongs to the TPP enzyme family gcl - 4.1.1.47 ko:K01608 ko00630,ko01100,map00630,map01100 - R00013 RC00899 ko00000,ko00001,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N EH3_k127_4744382_1 1123504.JQKD01000007_gene3355 2.677e-113 374.0 COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2VIZP@28216|Betaproteobacteria,4A9RC@80864|Comamonadaceae 28216|Betaproteobacteria K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate EH3_k127_4744382_2 159087.Daro_1808 4.121e-17 86.0 COG2044@1|root,COG2044@2|Bacteria,1N1SD@1224|Proteobacteria,2VWRS@28216|Betaproteobacteria,2KZNC@206389|Rhodocyclales 206389|Rhodocyclales S DsrE/DsrF-like family - - - - - - - - - - - - DrsE EH3_k127_4744382_3 1304883.KI912532_gene2262 1.31e-14 78.0 COG0509@1|root,COG0509@2|Bacteria,1N2U9@1224|Proteobacteria,2VVXI@28216|Betaproteobacteria,2KZJX@206389|Rhodocyclales 206389|Rhodocyclales E Glycine cleavage H-protein - - - - - - - - - - - - GCV_H EH3_k127_4756635_3 1366050.N234_03870 2.123e-130 424.0 COG1840@1|root,COG1840@2|Bacteria,1MUEG@1224|Proteobacteria,2VHI6@28216|Betaproteobacteria,1JZVS@119060|Burkholderiaceae 28216|Betaproteobacteria P Bacterial extracellular solute-binding protein fbpA - - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - SBP_bac_6,SBP_bac_8 EH3_k127_4756635_8 1158292.JPOE01000005_gene315 3.052e-42 162.0 COG0791@1|root,COG0791@2|Bacteria,1N0EE@1224|Proteobacteria,2VSHN@28216|Betaproteobacteria,1KKZC@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Cell wall-associated - - - ko:K13695,ko:K19303 - - - - ko00000,ko01000,ko01002,ko01011 - - - NLPC_P60 EH3_k127_4756635_5 62928.azo3180 3.292e-55 209.0 COG2199@1|root,COG3706@2|Bacteria,1R59V@1224|Proteobacteria,2VN7N@28216|Betaproteobacteria,2KUR6@206389|Rhodocyclales 206389|Rhodocyclales T COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - - - - - - - - - - GGDEF,Response_reg EH3_k127_4756635_0 864051.BurJ1DRAFT_2487 0.0 1034.0 COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2VI3T@28216|Betaproteobacteria,1KKBU@119065|unclassified Burkholderiales 28216|Betaproteobacteria I Acetyl-coenzyme A synthetase N-terminus prpE - 6.2.1.17 ko:K01908 ko00640,ko01100,map00640,map01100 - R00926,R01354 RC00004,RC00043,RC00070,RC02816 ko00000,ko00001,ko01000,ko01004 - - - ACAS_N,AMP-binding,AMP-binding_C EH3_k127_4756635_7 757424.Hsero_3233 2.891e-49 184.0 COG1434@1|root,COG1434@2|Bacteria,1MVW8@1224|Proteobacteria,2VSTA@28216|Betaproteobacteria,4747P@75682|Oxalobacteraceae 28216|Betaproteobacteria S DUF218 domain - - - - - - - - - - - - DUF218 EH3_k127_4756635_6 1229205.BUPH_02155 9.437e-51 196.0 COG3193@1|root,COG3193@2|Bacteria,1RGUD@1224|Proteobacteria,2VRBU@28216|Betaproteobacteria,1K77V@119060|Burkholderiaceae 28216|Betaproteobacteria S Haem-degrading glcG - - ko:K11477 - - - - ko00000 - - - Haem_degrading EH3_k127_4756635_2 1265502.KB905935_gene3099 3.673e-155 507.0 COG2270@1|root,COG2270@2|Bacteria,1MWXB@1224|Proteobacteria,2VKNE@28216|Betaproteobacteria,4AA7P@80864|Comamonadaceae 28216|Betaproteobacteria S Vacuole effluxer Atg22 like - - - ko:K06902 ko04138,map04138 - - - ko00000,ko00001,ko02000,ko04131 2.A.1.24,9.A.15.1 - - ATG22 EH3_k127_4756635_4 383372.Rcas_0914 3.156e-112 368.0 COG1024@1|root,COG1024@2|Bacteria,2G6BP@200795|Chloroflexi,376M6@32061|Chloroflexia 32061|Chloroflexia I PFAM Enoyl-CoA hydratase isomerase - - - - - - - - - - - - ECH_1 EH3_k127_4756635_1 1071679.BG57_04915 2.521e-269 837.0 COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2VIJ8@28216|Betaproteobacteria,1K0Y3@119060|Burkholderiaceae 28216|Betaproteobacteria IQ PFAM AMP-dependent synthetase and ligase - - - ko:K00666 - - - - ko00000,ko01000,ko01004 - - - AMP-binding,AMP-binding_C EH3_k127_4756635_9 1003200.AXXA_18161 1.62e-15 76.0 COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2VIK8@28216|Betaproteobacteria,3T1W4@506|Alcaligenaceae 28216|Betaproteobacteria BQ Deacetylases including yeast histone deacetylase and acetoin utilization protein hdaH - - - - - - - - - - - Hist_deacetyl EH3_k127_4769795_0 264198.Reut_A3229 1.672e-92 316.0 COG1450@1|root,COG4796@1|root,COG1450@2|Bacteria,COG4796@2|Bacteria,1MUUA@1224|Proteobacteria,2VI7X@28216|Betaproteobacteria,1K1ZV@119060|Burkholderiaceae 28216|Betaproteobacteria NU general secretion pathway protein D gspD - - ko:K02453 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - Secretin,Secretin_N EH3_k127_4769795_3 859657.RPSI07_0374 1.281e-40 161.0 28IWK@1|root,2Z8UV@2|Bacteria,1P9EC@1224|Proteobacteria,2VJZY@28216|Betaproteobacteria,1KGQC@119060|Burkholderiaceae 28216|Betaproteobacteria S General Secretory Pathway gspN - - ko:K02463 ko05111,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSN EH3_k127_4769795_8 859657.RPSI07_0375 4.743e-10 70.0 COG3149@1|root,COG3149@2|Bacteria,1NAXX@1224|Proteobacteria,2VY4T@28216|Betaproteobacteria,1K14Z@119060|Burkholderiaceae 28216|Betaproteobacteria U General secretion pathway gspM - - ko:K02462 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSM EH3_k127_4769795_4 1123368.AUIS01000003_gene1757 6.606e-29 135.0 COG3297@1|root,COG3297@2|Bacteria,1NVVW@1224|Proteobacteria,1S01F@1236|Gammaproteobacteria 1236|Gammaproteobacteria U involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins gspL GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - ko:K02461 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - GspL_C,T2SSL EH3_k127_4769795_2 1095769.CAHF01000014_gene3033 1.03e-49 191.0 COG3156@1|root,COG3156@2|Bacteria,1RE52@1224|Proteobacteria,2WFQK@28216|Betaproteobacteria,47436@75682|Oxalobacteraceae 28216|Betaproteobacteria U Type II secretion system (T2SS), protein K gspK - - ko:K02460 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSK EH3_k127_4769795_7 1216976.AX27061_2377 2.753e-16 90.0 COG4795@1|root,COG4795@2|Bacteria,1NIRI@1224|Proteobacteria,2VWRV@28216|Betaproteobacteria,3T4PT@506|Alcaligenaceae 28216|Betaproteobacteria U Type II secretory pathway component PulJ gspJ - - ko:K02459 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSJ EH3_k127_4769795_6 1198452.Jab_1c05520 3.417e-20 98.0 COG2165@1|root,COG2165@2|Bacteria,1N0C2@1224|Proteobacteria,2VVJ8@28216|Betaproteobacteria,474GX@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Type II secretion system (T2SS), protein I gspI - - ko:K02458 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSI EH3_k127_4769795_5 29581.BW37_02975 1.16e-23 108.0 COG2165@1|root,COG2165@2|Bacteria,1N8AD@1224|Proteobacteria,2VWBA@28216|Betaproteobacteria,474NB@75682|Oxalobacteraceae 28216|Betaproteobacteria U Type II transport protein GspH gspH - - ko:K02457 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - GspH,N_methyl EH3_k127_4769795_1 626418.bglu_1g00340 3.036e-61 215.0 COG2165@1|root,COG2165@2|Bacteria,1RBWD@1224|Proteobacteria,2VQMF@28216|Betaproteobacteria,1K70E@119060|Burkholderiaceae 28216|Betaproteobacteria U general secretion pathway protein G gspG - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSG EH3_k127_4769795_9 1003200.AXXA_21980 5.827e-08 63.0 2DP58@1|root,32UKC@2|Bacteria,1N8RA@1224|Proteobacteria,2VUFR@28216|Betaproteobacteria,3T4W8@506|Alcaligenaceae 28216|Betaproteobacteria S general secretion pathway protein - - - ko:K02452 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSC EH3_k127_4777645_1 237368.SCABRO_03229 6.605e-143 488.0 COG3291@1|root,COG4733@1|root,COG3291@2|Bacteria,COG4733@2|Bacteria 2|Bacteria S cellulase activity - - - - - - - - - - - - CBM_6,Laminin_G_3,PKD,PPC,Phage-tail_3,Reprolysin_3,fn3 EH3_k127_4777645_4 395493.BegalDRAFT_3253 2.464e-42 179.0 COG2931@1|root,COG3266@1|root,COG2931@2|Bacteria,COG3266@2|Bacteria,1QZXX@1224|Proteobacteria 1224|Proteobacteria U endopeptidase activity - - - - - - - - - - - - - EH3_k127_4777645_5 742159.HMPREF0004_5114 5.474e-28 118.0 COG0589@1|root,COG0589@2|Bacteria,1N8EJ@1224|Proteobacteria,2VW27@28216|Betaproteobacteria,3T94H@506|Alcaligenaceae 28216|Betaproteobacteria T Universal stress protein - - - - - - - - - - - - Usp EH3_k127_4777645_0 748247.AZKH_4496 6.563e-204 649.0 COG0210@1|root,COG0210@2|Bacteria,1MXSI@1224|Proteobacteria,2VJU9@28216|Betaproteobacteria,2KZP0@206389|Rhodocyclales 206389|Rhodocyclales L Nuclease-related domain - - - - - - - - - - - - NERD,UvrD_C_2 EH3_k127_4777645_3 1429916.X566_19455 9.856e-69 252.0 COG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,2U0KX@28211|Alphaproteobacteria,3JUVQ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria F Amidohydrolase family - - 3.5.4.28,3.5.4.31 ko:K12960 ko00270,ko01100,map00270,map01100 - R09660 RC00477 ko00000,ko00001,ko01000 - - - Amidohydro_1 EH3_k127_4777645_7 998674.ATTE01000001_gene1590 5.843e-16 85.0 COG0457@1|root,COG0457@2|Bacteria,1MZRR@1224|Proteobacteria 1224|Proteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - TPR_14,TPR_16,TPR_8 EH3_k127_4777645_2 864051.BurJ1DRAFT_4982 5.085e-113 372.0 COG0491@1|root,COG0491@2|Bacteria,1MUDN@1224|Proteobacteria,2VHMC@28216|Betaproteobacteria,1KJIH@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Metallo-beta-lactamase superfamily ycbL - - - - - - - - - - - Lactamase_B EH3_k127_4777645_6 1304883.KI912532_gene769 1.093e-17 85.0 COG0477@1|root,COG2814@2|Bacteria,1QUY6@1224|Proteobacteria,2VNN5@28216|Betaproteobacteria,2KZPQ@206389|Rhodocyclales 206389|Rhodocyclales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_4786886_2 648757.Rvan_0035 8.557e-21 92.0 COG1024@1|root,COG1024@2|Bacteria,1QY95@1224|Proteobacteria,2U4PY@28211|Alphaproteobacteria 28211|Alphaproteobacteria I Enoyl-CoA hydratase/isomerase - - 3.7.1.21 ko:K07539 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 M00541 R05593,R05594,R10696 RC01430,RC01431,RC03237 ko00000,ko00001,ko00002,ko01000 - - - ECH_1 EH3_k127_4786886_3 62928.azo1371 6.426e-06 54.0 COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2VI6G@28216|Betaproteobacteria,2KUBK@206389|Rhodocyclales 206389|Rhodocyclales C COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes lpd - 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Biotin_lipoyl,Pyr_redox_2,Pyr_redox_dim EH3_k127_4786886_1 1232410.KI421412_gene165 2.591e-93 312.0 COG1024@1|root,COG1024@2|Bacteria,1R8QP@1224|Proteobacteria,42S3Y@68525|delta/epsilon subdivisions,2WNXJ@28221|Deltaproteobacteria,43UFV@69541|Desulfuromonadales 28221|Deltaproteobacteria I Enoyl-CoA hydratase/isomerase bamR - 4.2.1.100 ko:K07537 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 M00541 R05597 RC03168 ko00000,ko00001,ko00002,ko01000 - - - ECH_1 EH3_k127_4786886_0 85643.Tmz1t_2951 1.41e-171 547.0 COG1775@1|root,COG1775@2|Bacteria,1NNW9@1224|Proteobacteria,2VV78@28216|Betaproteobacteria,2KXPH@206389|Rhodocyclales 206389|Rhodocyclales E 2-hydroxyglutaryl-CoA dehydratase, D-component - - 1.3.7.8 ko:K04112 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 M00541 R02451 RC00002,RC01839 ko00000,ko00001,ko00002,ko01000 - - - HGD-D EH3_k127_4815611_2 1216976.AX27061_0561 1.277e-131 427.0 COG0414@1|root,COG0414@2|Bacteria,1MV1S@1224|Proteobacteria,2VHF1@28216|Betaproteobacteria,3T1CB@506|Alcaligenaceae 28216|Betaproteobacteria H Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate panC - 6.3.2.1 ko:K01918 ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110 M00119 R02473 RC00096,RC00141 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_ligase EH3_k127_4815611_3 1095769.CAHF01000013_gene3343 4.511e-83 283.0 COG1428@1|root,COG1428@2|Bacteria,1RC50@1224|Proteobacteria,2VQ8U@28216|Betaproteobacteria,473B3@75682|Oxalobacteraceae 28216|Betaproteobacteria F Deoxynucleoside kinase dgk - - - - - - - - - - - dNK EH3_k127_4815611_5 420662.Mpe_A3019 9.158e-41 156.0 COG0801@1|root,COG0801@2|Bacteria,1MZH8@1224|Proteobacteria,2VSE2@28216|Betaproteobacteria,1KMF0@119065|unclassified Burkholderiales 28216|Betaproteobacteria H 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) folK - 2.7.6.3 ko:K00950 ko00790,ko01100,map00790,map01100 M00126,M00841 R03503 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HPPK EH3_k127_4815611_1 1304883.KI912532_gene3162 3.056e-163 539.0 COG0617@1|root,COG0617@2|Bacteria,1MVCS@1224|Proteobacteria,2VHY5@28216|Betaproteobacteria,2KV46@206389|Rhodocyclales 206389|Rhodocyclales H Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control pcnB - 2.7.7.19 ko:K00970 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PolyA_pol,PolyA_pol_RNAbd,PolyA_pol_arg_C EH3_k127_4815611_4 1235457.C404_17775 1.055e-54 199.0 COG0593@1|root,COG0593@2|Bacteria,1MVW6@1224|Proteobacteria,2VSFD@28216|Betaproteobacteria,1K0WU@119060|Burkholderiaceae 28216|Betaproteobacteria L Belongs to the DnaA family hda - - ko:K10763 - - - - ko00000,ko03032 - - - Bac_DnaA EH3_k127_4815611_0 365046.Rta_33920 4.894e-165 524.0 COG2358@1|root,COG2358@2|Bacteria,1MXW1@1224|Proteobacteria,2VH6G@28216|Betaproteobacteria,4ABRZ@80864|Comamonadaceae 28216|Betaproteobacteria S NMT1-like family - - - ko:K07080 - - - - ko00000 - - - NMT1_3 EH3_k127_4815611_6 1007105.PT7_2623 2.088e-39 151.0 COG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,2VHUG@28216|Betaproteobacteria,3T6UJ@506|Alcaligenaceae 28216|Betaproteobacteria S Domain of unknown function (DUF3394) - - - - - - - - - - - - DUF3394,DctM EH3_k127_4872225_0 859657.RPSI07_2438 3.692e-104 346.0 COG0312@1|root,COG0312@2|Bacteria,1MUVW@1224|Proteobacteria,2VHJ4@28216|Betaproteobacteria,1K0SS@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM peptidase U62 modulator of DNA gyrase pmbA - - ko:K03592 - - - - ko00000,ko01002 - - - PmbA_TldD EH3_k127_4872225_3 742823.HMPREF9465_01733 1.82e-36 144.0 COG3028@1|root,COG3028@2|Bacteria,1MZ4R@1224|Proteobacteria,2VSGZ@28216|Betaproteobacteria,4PR2B@995019|Sutterellaceae 28216|Betaproteobacteria S Protein of unknown function (DUF615) yjgA - - ko:K09889 - - - - ko00000,ko03009 - - - DUF615 EH3_k127_4872225_1 1095769.CAHF01000011_gene2620 1.189e-100 335.0 COG0521@1|root,COG0521@2|Bacteria,1R9W2@1224|Proteobacteria,2VH28@28216|Betaproteobacteria,472FZ@75682|Oxalobacteraceae 28216|Betaproteobacteria H Probable molybdopterin binding domain mogA - 2.7.7.75 ko:K03831 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09726 RC00002 ko00000,ko00001,ko01000 - - - MoCF_biosynth EH3_k127_4872225_2 29581.BW37_00373 4.168e-86 289.0 COG0400@1|root,COG0400@2|Bacteria,1RA02@1224|Proteobacteria,2VJ6G@28216|Betaproteobacteria,473QK@75682|Oxalobacteraceae 28216|Betaproteobacteria S Serine hydrolase (FSH1) estB - - ko:K06999 - - - - ko00000 - - - Abhydrolase_2 EH3_k127_4872225_4 1458427.BAWN01000015_gene941 3.14e-17 82.0 COG2259@1|root,COG2259@2|Bacteria,1MZVP@1224|Proteobacteria,2VSDZ@28216|Betaproteobacteria,4AEIQ@80864|Comamonadaceae 28216|Betaproteobacteria S PFAM DoxX family protein - - - ko:K15977 - - - - ko00000 - - - DoxX EH3_k127_491508_0 204773.HEAR1442 1.902e-67 234.0 COG2070@1|root,COG2070@2|Bacteria,1N52W@1224|Proteobacteria,2VJ45@28216|Betaproteobacteria,474R0@75682|Oxalobacteraceae 28216|Betaproteobacteria S 2-Nitropropane dioxygenase - - 1.13.12.16 ko:K00459 ko00910,map00910 - R00025 RC02541,RC02759 ko00000,ko00001,ko01000 - - - NMO EH3_k127_491508_1 397945.Aave_0669 1.182e-32 135.0 COG3945@1|root,COG3945@2|Bacteria,1N0BD@1224|Proteobacteria,2VUY4@28216|Betaproteobacteria,4AE71@80864|Comamonadaceae 28216|Betaproteobacteria S Hemerythrin HHE cation binding domain protein - - - - - - - - - - - - Hemerythrin EH3_k127_491508_2 595537.Varpa_3244 2.692e-15 77.0 2CBFC@1|root,32RYI@2|Bacteria,1N0T4@1224|Proteobacteria,2VRB1@28216|Betaproteobacteria,4AE35@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_500263_6 267608.RSc1631 7.024e-57 201.0 COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2VH50@28216|Betaproteobacteria,1K2H0@119060|Burkholderiaceae 28216|Betaproteobacteria I Poly(R)-hydroxyalkanoic acid synthase, class I phbC GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - ko:K03821 ko00650,map00650 - R04254 RC00004 ko00000,ko00001,ko01000 - - - PhaC_N EH3_k127_500263_8 1500897.JQNA01000002_gene365 7.973e-47 178.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2VH4C@28216|Betaproteobacteria,1K39S@119060|Burkholderiaceae 28216|Betaproteobacteria I Belongs to the thiolase family phbA GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N EH3_k127_500263_3 395495.Lcho_2085 2.985e-133 428.0 COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,2VH8R@28216|Betaproteobacteria,1KIVJ@119065|unclassified Burkholderiales 28216|Betaproteobacteria IQ Belongs to the short-chain dehydrogenases reductases (SDR) family phbB GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.1.1.36 ko:K00023 ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200 M00373 R01779,R01977 RC00103,RC00117 ko00000,ko00001,ko00002,ko01000 - - - adh_short,adh_short_C2 EH3_k127_500263_5 1458357.BG58_03965 2.272e-75 258.0 COG5394@1|root,COG5394@2|Bacteria,1RHRC@1224|Proteobacteria,2VJ2N@28216|Betaproteobacteria,1K319@119060|Burkholderiaceae 28216|Betaproteobacteria S Polyhydroxyalkanoate synthesis repressor PhaR phaR - - - - - - - - - - - PHB_acc,PHB_acc_N EH3_k127_500263_1 1286093.C266_25705 9.925e-220 689.0 COG0621@1|root,COG0621@2|Bacteria,1MU7N@1224|Proteobacteria,2VI16@28216|Betaproteobacteria,1K3BG@119060|Burkholderiaceae 28216|Betaproteobacteria J Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,TRAM,UPF0004 EH3_k127_500263_9 220664.PFL_2309 4.323e-31 141.0 COG0625@1|root,COG0625@2|Bacteria,1RGW9@1224|Proteobacteria,1SYYW@1236|Gammaproteobacteria,1YUG0@136843|Pseudomonas fluorescens group 1236|Gammaproteobacteria O Glutathione S-transferase, N-terminal domain - - - ko:K11208 - - - - ko00000 - - - GST_N_2 EH3_k127_500263_10 1448139.AI20_17120 1.663e-16 92.0 COG3637@1|root,COG3637@2|Bacteria,1RICQ@1224|Proteobacteria,1SF8S@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Outer membrane protein beta-barrel domain - - - - - - - - - - - - OMP_b-brl EH3_k127_500263_2 1169143.KB911034_gene1489 3.943e-194 614.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2VH4C@28216|Betaproteobacteria,1JZQU@119060|Burkholderiaceae 28216|Betaproteobacteria I Belongs to the thiolase family bktB - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N EH3_k127_500263_4 477184.KYC_09115 6.87e-76 269.0 COG0560@1|root,COG0560@2|Bacteria,1MWA3@1224|Proteobacteria,2VKZJ@28216|Betaproteobacteria,3T1P3@506|Alcaligenaceae 28216|Betaproteobacteria E Phosphoserine phosphatase serB - 3.1.3.3 ko:K01079 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R00582 RC00017 ko00000,ko00001,ko00002,ko01000,ko01009 - - - DUF4072,HAD EH3_k127_500263_0 760117.JN27_09710 0.0 1494.0 COG1197@1|root,COG1197@2|Bacteria,1MUXG@1224|Proteobacteria,2VI7M@28216|Betaproteobacteria,473DZ@75682|Oxalobacteraceae 28216|Betaproteobacteria L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site mfd - - ko:K03723 ko03420,map03420 - - - ko00000,ko00001,ko01000,ko03400 - - - CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF EH3_k127_500263_7 1283300.ATXB01000001_gene1776 8.714e-53 194.0 COG1211@1|root,COG1211@2|Bacteria,1MY3B@1224|Proteobacteria,1S21S@1236|Gammaproteobacteria,1XET0@135618|Methylococcales 135618|Methylococcales I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) ispD - 2.7.7.60 ko:K00991 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633 RC00002 ko00000,ko00001,ko00002,ko01000 - - - IspD EH3_k127_5044527_0 1095769.CAHF01000011_gene2096 4.083e-81 278.0 COG0760@1|root,COG0760@2|Bacteria,1MZDK@1224|Proteobacteria,2VJZP@28216|Betaproteobacteria,473C5@75682|Oxalobacteraceae 28216|Betaproteobacteria M PPIC-type PPIASE domain cbf2 - 5.2.1.8 ko:K03769 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_3,SurA_N_3 EH3_k127_5044527_4 292415.Tbd_1531 7.308e-25 107.0 COG0271@1|root,COG0271@2|Bacteria,1MZG5@1224|Proteobacteria,2VVNP@28216|Betaproteobacteria,1KRVA@119069|Hydrogenophilales 119069|Hydrogenophilales T BolA-like protein - - - ko:K05527 - - - - ko00000,ko03000 - - - BolA EH3_k127_5044527_1 76114.ebA6501 1.449e-66 239.0 COG2917@1|root,COG2917@2|Bacteria,1NWIZ@1224|Proteobacteria,2VRHB@28216|Betaproteobacteria,2KVFB@206389|Rhodocyclales 206389|Rhodocyclales D probably involved in intracellular septation ispZ - - ko:K06190 - - - - ko00000 - - - IspA EH3_k127_5044527_2 1175306.GWL_16570 1.441e-65 228.0 COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,2VSHQ@28216|Betaproteobacteria,4745V@75682|Oxalobacteraceae 28216|Betaproteobacteria C Belongs to the MsrB Met sulfoxide reductase family msrB - 1.8.4.12 ko:K07305 - - - - ko00000,ko01000 - - - SelR EH3_k127_5044527_3 93220.LV28_03415 5.236e-52 188.0 COG0397@1|root,COG0397@2|Bacteria,1MVK3@1224|Proteobacteria,2VH7S@28216|Betaproteobacteria,1K1NK@119060|Burkholderiaceae 28216|Betaproteobacteria S Belongs to the UPF0061 (SELO) family - - - - - - - - - - - - UPF0061 EH3_k127_5095291_4 1454004.AW11_03509 8.73e-38 145.0 COG1752@1|root,COG1752@2|Bacteria,1R7RX@1224|Proteobacteria,2VMTI@28216|Betaproteobacteria 28216|Betaproteobacteria S Patatin-like phospholipase - - - - - - - - - - - - Patatin EH3_k127_5095291_2 760117.JN27_15870 1.322e-96 319.0 COG1309@1|root,COG1309@2|Bacteria,1R52P@1224|Proteobacteria,2VIDN@28216|Betaproteobacteria,472FE@75682|Oxalobacteraceae 28216|Betaproteobacteria K Bacterial transcriptional repressor - - - - - - - - - - - - TetR,TetR_N EH3_k127_5095291_1 358220.C380_03055 5.454e-97 342.0 COG0457@1|root,COG0457@2|Bacteria,1R3PT@1224|Proteobacteria,2VN88@28216|Betaproteobacteria,4ACX0@80864|Comamonadaceae 28216|Betaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - - EH3_k127_5095291_0 1123487.KB892865_gene1515 1.08e-156 517.0 COG0150@1|root,COG0150@2|Bacteria,1MURG@1224|Proteobacteria,2VHJT@28216|Betaproteobacteria,2KVM3@206389|Rhodocyclales 206389|Rhodocyclales F Phosphoribosylformylglycinamidine cyclo-ligase purM - 6.3.3.1 ko:K01933 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04208 RC01100 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C EH3_k127_5095291_3 1123487.KB892834_gene2639 4.034e-64 227.0 COG0697@1|root,COG0697@2|Bacteria,1RFZW@1224|Proteobacteria,2VJS5@28216|Betaproteobacteria 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_51029_1 204773.HEAR1354 6.43e-127 413.0 COG0330@1|root,COG0330@2|Bacteria,1MUM8@1224|Proteobacteria,2VHBD@28216|Betaproteobacteria,47242@75682|Oxalobacteraceae 28216|Betaproteobacteria O C-terminal region of band_7 qmcA - - - - - - - - - - - Band_7,Band_7_C EH3_k127_51029_3 1286093.C266_00555 2.595e-30 125.0 COG1585@1|root,COG1585@2|Bacteria,1N474@1224|Proteobacteria,2VWDX@28216|Betaproteobacteria,1K7AI@119060|Burkholderiaceae 28216|Betaproteobacteria OU NfeD-like C-terminal, partner-binding - - - - - - - - - - - - NfeD EH3_k127_51029_0 1500894.JQNN01000001_gene1623 0.0 1240.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2VHQ3@28216|Betaproteobacteria,4736M@75682|Oxalobacteraceae 28216|Betaproteobacteria H Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate ppsA - 2.7.9.2 ko:K01007 ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200 M00173,M00374 R00199 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N EH3_k127_51029_2 1144319.PMI16_00348 8.748e-116 379.0 COG1806@1|root,COG1806@2|Bacteria,1MUHU@1224|Proteobacteria,2VI4R@28216|Betaproteobacteria,472KF@75682|Oxalobacteraceae 28216|Betaproteobacteria F Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation ydiA - 2.7.11.33,2.7.4.28 ko:K09773 - - - - ko00000,ko01000 - - - Kinase-PPPase EH3_k127_51029_4 558152.IQ37_13805 0.0007442 43.0 COG1770@1|root,COG1770@2|Bacteria,4NF0W@976|Bacteroidetes,1HYYK@117743|Flavobacteriia,3ZNZR@59732|Chryseobacterium 976|Bacteroidetes E prolyl oligopeptidase - - 3.4.21.26 ko:K01322 ko04614,map04614 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N EH3_k127_5121500_1 1121127.JAFA01000002_gene1558 4.352e-111 372.0 COG0651@1|root,COG0651@2|Bacteria,1MURB@1224|Proteobacteria,2VP1W@28216|Betaproteobacteria,1KCPK@119060|Burkholderiaceae 28216|Betaproteobacteria CP Proton-conducting membrane transporter - - - - - - - - - - - - Proton_antipo_M EH3_k127_5121500_4 189753.AXAS01000001_gene3774 3.43e-24 116.0 COG1006@1|root,COG1006@2|Bacteria,1N7TX@1224|Proteobacteria,2UHUU@28211|Alphaproteobacteria,3JZES@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria P NADH-ubiquinone/plastoquinone oxidoreductase chain 4L - - - ko:K05567 - - - - ko00000,ko02000 2.A.63.1,2.A.63.2 - - Oxidored_q2 EH3_k127_5121500_0 1121127.JAFA01000002_gene1560 1.768e-111 373.0 COG1563@1|root,COG1563@2|Bacteria,1RB3N@1224|Proteobacteria,2W6RN@28216|Betaproteobacteria,1KCFC@119060|Burkholderiaceae 28216|Betaproteobacteria P Domain of unknown function (DUF4040) - - - - - - - - - - - - DUF4040,MnhB EH3_k127_5121500_3 1121127.JAFA01000002_gene1561 6.856e-30 123.0 COG1320@1|root,COG1320@2|Bacteria,1N75I@1224|Proteobacteria,2W4N4@28216|Betaproteobacteria,1KDU2@119060|Burkholderiaceae 28216|Betaproteobacteria P Na+/H+ antiporter subunit - - - - - - - - - - - - PhaG_MnhG_YufB EH3_k127_5121500_2 1121127.JAFA01000002_gene1563 8.109e-49 182.0 COG1863@1|root,COG1863@2|Bacteria,1N7MB@1224|Proteobacteria,2W7Z2@28216|Betaproteobacteria,1KCPM@119060|Burkholderiaceae 28216|Betaproteobacteria P Na+/H+ ion antiporter subunit - - - - - - - - - - - - MNHE EH3_k127_5121500_5 1122604.JONR01000024_gene4640 3.241e-05 48.0 arCOG05203@1|root,31A0K@2|Bacteria,1RHZR@1224|Proteobacteria,1SS0Q@1236|Gammaproteobacteria,1X8RK@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - EH3_k127_51352_3 1122951.ATUE01000006_gene877 3.239e-154 491.0 COG0861@1|root,COG0861@2|Bacteria,1MUNR@1224|Proteobacteria,1RP9Y@1236|Gammaproteobacteria,3NJEV@468|Moraxellaceae 1236|Gammaproteobacteria P Integral membrane protein TerC family alx GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K05794 - - - - ko00000 - - - TerC EH3_k127_51352_5 1175306.GWL_24530 7.165e-96 336.0 COG0795@1|root,COG0795@2|Bacteria,1MVW3@1224|Proteobacteria,2VHA1@28216|Betaproteobacteria,472IT@75682|Oxalobacteraceae 28216|Betaproteobacteria S Predicted permease YjgP/YjgQ family lptG - - ko:K11720 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ EH3_k127_51352_4 748247.AZKH_1646 4.845e-96 347.0 COG0795@1|root,COG0795@2|Bacteria,1MUF2@1224|Proteobacteria,2VH9C@28216|Betaproteobacteria,2KVN9@206389|Rhodocyclales 206389|Rhodocyclales S Permease YjgP YjgQ family - - - ko:K07091 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ EH3_k127_51352_1 859657.RPSI07_1059 5.755e-176 564.0 COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,2VH79@28216|Betaproteobacteria,1K141@119060|Burkholderiaceae 28216|Betaproteobacteria E Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides pepA GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 ko:K01255 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M17,Peptidase_M17_N EH3_k127_51352_7 1144319.PMI16_00585 1.837e-30 126.0 COG2927@1|root,COG2927@2|Bacteria,1MZ3V@1224|Proteobacteria,2VTYC@28216|Betaproteobacteria,474DU@75682|Oxalobacteraceae 28216|Betaproteobacteria L DNA polymerase III (Chi subunit) holC - 2.7.7.7 ko:K02339 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_chi EH3_k127_51352_2 983917.RGE_45030 2.206e-169 577.0 COG1505@1|root,COG1505@2|Bacteria,1NZ7N@1224|Proteobacteria,2VPBK@28216|Betaproteobacteria,1KNCC@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Prolyl oligopeptidase, N-terminal beta-propeller domain - - 3.4.21.26 ko:K01322 ko04614,map04614 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N EH3_k127_51352_0 742823.HMPREF9465_01775 0.0 1402.0 COG0525@1|root,COG0525@2|Bacteria,1MV7B@1224|Proteobacteria,2VH5Z@28216|Betaproteobacteria,4PQGK@995019|Sutterellaceae 28216|Betaproteobacteria J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner valS - 6.1.1.9 ko:K01873 ko00970,map00970 M00359,M00360 R03665 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1 EH3_k127_51352_6 1000565.METUNv1_00678 2.856e-90 305.0 COG0676@1|root,COG0676@2|Bacteria,1Q7VN@1224|Proteobacteria,2VKZK@28216|Betaproteobacteria,2KUFY@206389|Rhodocyclales 206389|Rhodocyclales G Belongs to the glucose-6-phosphate 1-epimerase family - - 5.1.3.15 ko:K01792 ko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130 - R02739 RC00563 ko00000,ko00001,ko01000 - - - Aldose_epim EH3_k127_51352_9 395494.Galf_2106 1.827e-07 63.0 COG3132@1|root,COG3132@2|Bacteria,1RA13@1224|Proteobacteria,2VQGS@28216|Betaproteobacteria,44WEY@713636|Nitrosomonadales 28216|Betaproteobacteria S Protein of unknown function, DUF480 yceH - - ko:K09915 - - - - ko00000 - - - DUF480 EH3_k127_51352_8 1485544.JQKP01000015_gene2077 1.054e-18 86.0 COG3132@1|root,COG3132@2|Bacteria,1RA13@1224|Proteobacteria,2VQGS@28216|Betaproteobacteria,44WEY@713636|Nitrosomonadales 28216|Betaproteobacteria S Protein of unknown function, DUF480 yceH - - ko:K09915 - - - - ko00000 - - - DUF480 EH3_k127_5154453_0 1244869.H261_08568 9.354e-147 475.0 COG0247@1|root,COG0277@1|root,COG1152@1|root,COG0247@2|Bacteria,COG0277@2|Bacteria,COG1152@2|Bacteria,1MU6Y@1224|Proteobacteria,2TSN5@28211|Alphaproteobacteria,2JRH7@204441|Rhodospirillales 204441|Rhodospirillales C 4Fe-4S dicluster domain - - - ko:K18930 - - - - ko00000 - - - CCG,FAD-oxidase_C,FAD_binding_4,Fer4_7,Fer4_8 EH3_k127_5154453_2 1265502.KB905937_gene2610 8.555e-43 169.0 COG3012@1|root,COG3012@2|Bacteria,1QUG4@1224|Proteobacteria,2WH4S@28216|Betaproteobacteria,4AB03@80864|Comamonadaceae 28216|Betaproteobacteria S SEC-C motif domain protein - - - ko:K07039 - - - - ko00000 - - - SEC-C,UPF0149 EH3_k127_5154453_1 1121033.AUCF01000003_gene3156 4.424e-146 470.0 COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,2JPGU@204441|Rhodospirillales 204441|Rhodospirillales H Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - 2.6.1.96 ko:K16871 ko00250,ko00650,ko01100,ko01120,map00250,map00650,map01100,map01120 M00027 R10178 RC00008,RC00062 ko00000,ko00001,ko00002,ko01000 - - - Aminotran_3 EH3_k127_516217_1 555779.Dthio_PD3611 6.013e-57 203.0 COG4584@1|root,COG4584@2|Bacteria,1MWIV@1224|Proteobacteria,42MF0@68525|delta/epsilon subdivisions,2WMC1@28221|Deltaproteobacteria,2MGHZ@213115|Desulfovibrionales 28221|Deltaproteobacteria L PFAM Integrase catalytic region - - - - - - - - - - - - rve EH3_k127_516217_0 1121405.dsmv_0889 1.418e-85 291.0 COG1484@1|root,COG1484@2|Bacteria,1MWQX@1224|Proteobacteria,42NRE@68525|delta/epsilon subdivisions,2WM0E@28221|Deltaproteobacteria,2MJFH@213118|Desulfobacterales 28221|Deltaproteobacteria L IstB-like ATP binding protein - - - - - - - - - - - - IstB_IS21 EH3_k127_5186585_4 1005048.CFU_3262 4.384e-135 439.0 COG0452@1|root,COG0452@2|Bacteria,1MVQP@1224|Proteobacteria,2VI4X@28216|Betaproteobacteria,472SV@75682|Oxalobacteraceae 28216|Betaproteobacteria H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine coaBC - 4.1.1.36,6.3.2.5 ko:K13038 ko00770,ko01100,map00770,map01100 M00120 R03269,R04231 RC00064,RC00090,RC00822 ko00000,ko00001,ko00002,ko01000 - - - DFP,Flavoprotein EH3_k127_5186585_5 402626.Rpic_2732 1.716e-69 237.0 COG0756@1|root,COG0756@2|Bacteria,1RA7P@1224|Proteobacteria,2VQ5I@28216|Betaproteobacteria,1K6Z7@119060|Burkholderiaceae 28216|Betaproteobacteria F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA dut - 3.6.1.23 ko:K01520 ko00240,ko00983,ko01100,map00240,map00983,map01100 M00053 R02100,R11896 RC00002 ko00000,ko00001,ko00002,ko01000,ko03400 - - - dUTPase EH3_k127_5186585_1 1538295.JY96_07450 3.087e-171 556.0 COG0280@1|root,COG2030@1|root,COG0280@2|Bacteria,COG2030@2|Bacteria,1MWPK@1224|Proteobacteria,2WGKC@28216|Betaproteobacteria,1KJ9Z@119065|unclassified Burkholderiales 28216|Betaproteobacteria CI Bifunctional enoyl-CoA hydratase phosphate acetyltransferase pta - 2.3.1.19,2.3.1.8 ko:K00625,ko:K00634 ko00430,ko00620,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00650,map00680,map00720,map01100,map01120,map01200 M00357,M00579 R00230,R00921,R01174 RC00004,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000 - - - MaoC_dehydratas,PTA_PTB EH3_k127_5186585_2 322710.Avin_44030 2.567e-151 498.0 COG0282@1|root,COG0282@2|Bacteria,1MW61@1224|Proteobacteria,1RMKB@1236|Gammaproteobacteria 1236|Gammaproteobacteria F Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction ackA - 2.7.2.1 ko:K00925 ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200 M00357,M00579 R00315,R01353 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - Acetate_kinase EH3_k127_5186585_7 1120999.JONM01000009_gene400 4.217e-44 161.0 COG0623@1|root,COG0623@2|Bacteria,1MV05@1224|Proteobacteria,2VJQ0@28216|Betaproteobacteria,2KQMC@206351|Neisseriales 206351|Neisseriales I Enoyl- acyl-carrier-protein reductase NADH - - 1.3.1.10,1.3.1.9 ko:K00208 ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212 M00083,M00572 R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671 RC00052,RC00076,RC00120 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 EH3_k127_5186585_10 1038869.AXAN01000023_gene1861 2.941e-18 90.0 2FIK0@1|root,34AC1@2|Bacteria,1P0JH@1224|Proteobacteria,2W4AN@28216|Betaproteobacteria,1KA50@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_5186585_8 1454004.AW11_03042 6.759e-42 167.0 COG5380@1|root,COG5380@2|Bacteria,1N6UY@1224|Proteobacteria,2VRU4@28216|Betaproteobacteria 28216|Betaproteobacteria O lipid catabolic process - - - - - - - - - - - - - EH3_k127_5186585_6 404589.Anae109_4324 2.636e-60 216.0 COG0204@1|root,COG0204@2|Bacteria,1RJMS@1224|Proteobacteria,42SG0@68525|delta/epsilon subdivisions,2WPEF@28221|Deltaproteobacteria 28221|Deltaproteobacteria I Phosphate acyltransferases - - - - - - - - - - - - Acyltransferase EH3_k127_5186585_11 1123392.AQWL01000010_gene2296 0.0001872 48.0 COG1073@1|root,COG1073@2|Bacteria,1N1WH@1224|Proteobacteria,2W50B@28216|Betaproteobacteria 1224|Proteobacteria S Protein of unknown function (DUF3530) - - - - - - - - - - - - DUF3530 EH3_k127_5186585_3 795666.MW7_2155 3.861e-151 490.0 COG0446@1|root,COG0446@2|Bacteria,1N5MC@1224|Proteobacteria,2VK35@28216|Betaproteobacteria,1K4WY@119060|Burkholderiaceae 28216|Betaproteobacteria C Sulfide dehydrogenase soxF - 1.8.2.1,1.8.5.4 ko:K05301,ko:K17218 ko00920,ko01100,ko01120,map00920,map01100,map01120 - R00528,R10152 RC00168,RC03155 ko00000,ko00001,ko01000 - - - FCSD-flav_bind,Pyr_redox_2,TAT_signal EH3_k127_5186585_9 1000565.METUNv1_02965 5.159e-21 96.0 COG2863@1|root,COG2863@2|Bacteria,1NGJ1@1224|Proteobacteria,2VVR2@28216|Betaproteobacteria,2KX1J@206389|Rhodocyclales 206389|Rhodocyclales C Cytochrome c, class I - - - - - - - - - - - - Cytochrom_C EH3_k127_5186585_0 1349767.GJA_3949 0.0 1014.0 COG0542@1|root,COG0542@2|Bacteria,1MV8B@1224|Proteobacteria,2VH1K@28216|Betaproteobacteria,472J7@75682|Oxalobacteraceae 28216|Betaproteobacteria O Belongs to the ClpA ClpB family clpA - - ko:K03694 - - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N EH3_k127_5195045_1 338969.Rfer_2324 1.232e-172 547.0 COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2VIN1@28216|Betaproteobacteria,4AAWT@80864|Comamonadaceae 28216|Betaproteobacteria ET extracellular solute-binding protein, family 3 aapJ - - ko:K02030,ko:K09969,ko:K10001 ko02010,ko02020,map02010,map02020 M00230,M00232,M00236 - - ko00000,ko00001,ko00002,ko02000 3.A.1.3,3.A.1.3.18,3.A.1.3.19,3.A.1.3.4,3.A.1.3.7,3.A.1.3.8 - - SBP_bac_3 EH3_k127_5195045_0 29581.BW37_00013 1.643e-185 587.0 COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2WGG3@28216|Betaproteobacteria,473CU@75682|Oxalobacteraceae 28216|Betaproteobacteria V ABC transporter transmembrane region atm1 - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran EH3_k127_521812_1 383407.XOC_0067 1.824e-10 64.0 COG3039@1|root,COG3039@2|Bacteria,1MVTU@1224|Proteobacteria,1RZGN@1236|Gammaproteobacteria,1X5KA@135614|Xanthomonadales 135614|Xanthomonadales L COG3039 Transposase and inactivated derivatives, IS5 family - - - ko:K07481 - - - - ko00000 - - - DDE_Tnp_1,DUF772 EH3_k127_521812_0 426114.THI_1737 1.982e-249 782.0 COG5421@1|root,COG5421@2|Bacteria,1R3NX@1224|Proteobacteria,2VNNI@28216|Betaproteobacteria,1KNZB@119065|unclassified Burkholderiales 28216|Betaproteobacteria L Evidence 2b Function of strongly homologous gene - - - - - - - - - - - - DDE_Tnp_1 EH3_k127_5317068_3 983917.RGE_13440 1.143e-63 220.0 COG0306@1|root,COG0306@2|Bacteria,1MVXK@1224|Proteobacteria,2VI71@28216|Betaproteobacteria,1KJVK@119065|unclassified Burkholderiales 28216|Betaproteobacteria P Phosphate transporter family pit - - ko:K03306 - - - - ko00000 2.A.20 - - PHO4 EH3_k127_5317068_1 987059.RBXJA2T_05418 8.87e-88 314.0 COG1392@1|root,COG1392@2|Bacteria,1R4SP@1224|Proteobacteria,2VKF1@28216|Betaproteobacteria,1KK30@119065|unclassified Burkholderiales 28216|Betaproteobacteria P Protein of unknown function DUF47 - - - ko:K07220 - - - - ko00000 - - - PhoU_div EH3_k127_5317068_2 1265502.KB905943_gene2723 5.002e-80 297.0 COG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria,2VKJ8@28216|Betaproteobacteria,4AD1S@80864|Comamonadaceae 28216|Betaproteobacteria KLT Protein tyrosine kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PEGA,Pkinase EH3_k127_5317068_6 420662.Mpe_A2952 3.996e-28 119.0 COG3063@1|root,COG3063@2|Bacteria,1PUFT@1224|Proteobacteria,2WATN@28216|Betaproteobacteria,1KP02@119065|unclassified Burkholderiales 28216|Betaproteobacteria NU Type IV pilus biogenesis stability protein PilW - - - - - - - - - - - - - EH3_k127_5317068_0 1458357.BG58_32840 3.036e-130 425.0 COG0466@1|root,COG0466@2|Bacteria,1MWQ9@1224|Proteobacteria,2VJKY@28216|Betaproteobacteria,1K3YV@119060|Burkholderiaceae 28216|Betaproteobacteria O PFAM AAA ATPase central domain protein - - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA EH3_k127_5317068_4 742823.HMPREF9465_01981 4.013e-62 228.0 COG2197@1|root,COG2197@2|Bacteria,1NQH7@1224|Proteobacteria,2VP8T@28216|Betaproteobacteria,4PQXA@995019|Sutterellaceae 28216|Betaproteobacteria K Bacterial regulatory proteins, luxR family - - - - - - - - - - - - GerE,Response_reg EH3_k127_5317068_5 742823.HMPREF9465_01982 1.28e-40 156.0 COG3850@1|root,COG3850@2|Bacteria,1MWZT@1224|Proteobacteria,2VIFM@28216|Betaproteobacteria,4PQF9@995019|Sutterellaceae 28216|Betaproteobacteria T Type IV pili methyl-accepting chemotaxis transducer N-term - - 2.7.13.3 ko:K07673 ko02020,map02020 M00471 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - GAF_3,HAMP,HATPase_c,HisKA_3,PilJ EH3_k127_5350247_0 1121035.AUCH01000004_gene429 3.178e-291 904.0 COG1924@1|root,COG1924@2|Bacteria,1PKG6@1224|Proteobacteria 1224|Proteobacteria I CoA-substrate-specific enzyme activase - - - - - - - - - - - - BcrAD_BadFG,DUF2229,HGD-D EH3_k127_5356167_4 314230.DSM3645_21644 2.724e-23 116.0 COG3182@1|root,COG3182@2|Bacteria,2J03J@203682|Planctomycetes 203682|Planctomycetes S iron-regulated membrane protein - - - - - - - - - - - - PepSY,PepSY_TM EH3_k127_5356167_0 365046.Rta_04000 5.406e-79 287.0 COG1252@1|root,COG1252@2|Bacteria,1QUKT@1224|Proteobacteria,2WGU5@28216|Betaproteobacteria,4ADZF@80864|Comamonadaceae 28216|Betaproteobacteria C Pyridine nucleotide-disulphide oxidoreductase - - 1.8.5.4 ko:K17218 ko00920,map00920 - R10152 RC03155 ko00000,ko00001,ko01000 - - - Pyr_redox_2 EH3_k127_5356167_2 365044.Pnap_1518 1.995e-54 207.0 292MF@1|root,32CTK@2|Bacteria,1RJGD@1224|Proteobacteria,2VSMH@28216|Betaproteobacteria,4AEPG@80864|Comamonadaceae 28216|Betaproteobacteria S Protein of unknown function (DUF3047) - - - - - - - - - - - - DUF3047 EH3_k127_5356167_3 1415779.JOMH01000001_gene208 6.384e-47 178.0 COG3222@1|root,COG3222@2|Bacteria,1PUE2@1224|Proteobacteria,1TANI@1236|Gammaproteobacteria,1XBTJ@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K09931 - - - - ko00000 - - - DUF2064 EH3_k127_5356167_1 1454004.AW11_02741 3.633e-69 247.0 COG1215@1|root,COG1215@2|Bacteria,1RA75@1224|Proteobacteria,2VQQD@28216|Betaproteobacteria 28216|Betaproteobacteria M Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 EH3_k127_5356167_5 365046.Rta_03760 1.877e-06 58.0 COG0702@1|root,COG0702@2|Bacteria,1RA22@1224|Proteobacteria,2VS8D@28216|Betaproteobacteria,4ADRQ@80864|Comamonadaceae 28216|Betaproteobacteria GM epimerase - - - - - - - - - - - - - EH3_k127_5360559_1 338969.Rfer_2478 1.905e-56 205.0 COG0028@1|root,COG0028@2|Bacteria,1MXDW@1224|Proteobacteria,2VI39@28216|Betaproteobacteria 28216|Betaproteobacteria EH Belongs to the TPP enzyme family - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N EH3_k127_5360559_0 1265505.ATUG01000001_gene3215 8.987e-124 408.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,42M5F@68525|delta/epsilon subdivisions,2WISF@28221|Deltaproteobacteria,2MIAR@213118|Desulfobacterales 28221|Deltaproteobacteria IQ PFAM AMP-dependent synthetase and ligase - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C EH3_k127_5386444_1 1502852.FG94_01927 3.564e-114 375.0 COG0018@1|root,COG0018@2|Bacteria,1MU4J@1224|Proteobacteria,2VHT1@28216|Betaproteobacteria,4727Y@75682|Oxalobacteraceae 28216|Betaproteobacteria J Arginyl-tRNA synthetase argS - 6.1.1.19 ko:K01887 ko00970,map00970 M00359,M00360 R03646 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d EH3_k127_5386444_0 420662.Mpe_A3510 7.708e-134 439.0 28MAA@1|root,2ZAP0@2|Bacteria,1R5EZ@1224|Proteobacteria,2VNTE@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_5386444_2 1238182.C882_3565 3.452e-32 144.0 COG0346@1|root,COG0346@2|Bacteria,1RD81@1224|Proteobacteria,2U7VR@28211|Alphaproteobacteria,2JX24@204441|Rhodospirillales 204441|Rhodospirillales E Glyoxalase-like domain - - - - - - - - - - - - Glyoxalase_3 EH3_k127_5399903_0 469610.HMPREF0189_01390 3.552e-230 723.0 COG0046@1|root,COG0047@1|root,COG0046@2|Bacteria,COG0047@2|Bacteria,1MYN4@1224|Proteobacteria,2VHTE@28216|Betaproteobacteria,1KJY0@119065|unclassified Burkholderiales 28216|Betaproteobacteria F Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate purL GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - AIRS_C,GATase_5 EH3_k127_5515478_1 640081.Dsui_2636 5.415e-07 51.0 COG0845@1|root,COG5569@1|root,COG0845@2|Bacteria,COG5569@2|Bacteria,1MVAS@1224|Proteobacteria,2VJXV@28216|Betaproteobacteria,2KVT7@206389|Rhodocyclales 206389|Rhodocyclales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K07798 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4,8.A.1 - - CusF_Ec,HlyD_D23 EH3_k127_5515478_0 640081.Dsui_1074 0.0 1019.0 COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2VHCZ@28216|Betaproteobacteria,2KUGU@206389|Rhodocyclales 206389|Rhodocyclales P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family cusA - - ko:K07787 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4 - - ACR_tran EH3_k127_5518914_2 640081.Dsui_1091 9.997e-65 229.0 COG1651@1|root,COG1651@2|Bacteria,1RD39@1224|Proteobacteria,2VIHV@28216|Betaproteobacteria,2KW1Z@206389|Rhodocyclales 206389|Rhodocyclales O Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process dsbC - 5.3.4.1 ko:K03981 - - - - ko00000,ko01000,ko02044,ko03110 3.A.7.11.1 - - DsbC_N,Thioredoxin_2 EH3_k127_5518914_0 522306.CAP2UW1_0260 2.14e-111 374.0 COG2821@1|root,COG2821@2|Bacteria,1MXD4@1224|Proteobacteria,2VHBF@28216|Betaproteobacteria,1KQ9E@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria M Membrane-bound lytic murein transglycosylase mltA - - ko:K08304 - - - - ko00000,ko01000,ko01011 - GH102 - 3D,MltA EH3_k127_5518914_4 1095769.CAHF01000003_gene960 9.552e-50 182.0 COG2967@1|root,COG2967@2|Bacteria,1MZ2Z@1224|Proteobacteria,2VSPE@28216|Betaproteobacteria,474EN@75682|Oxalobacteraceae 28216|Betaproteobacteria P ApaG domain apaG - - ko:K06195 - - - - ko00000 - - - DUF525 EH3_k127_5518914_1 391038.Bphy_2696 1.914e-110 362.0 COG0036@1|root,COG0036@2|Bacteria,1MUZM@1224|Proteobacteria,2VIGU@28216|Betaproteobacteria,1K37J@119060|Burkholderiaceae 28216|Betaproteobacteria G Belongs to the ribulose-phosphate 3-epimerase family rpe - 5.1.3.1 ko:K01783 ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01529 RC00540 ko00000,ko00001,ko00002,ko01000 - - - Ribul_P_3_epim EH3_k127_5518914_3 94624.Bpet0321 1.713e-58 214.0 COG0546@1|root,COG0546@2|Bacteria,1RDDY@1224|Proteobacteria,2VIZ6@28216|Betaproteobacteria,3T3KD@506|Alcaligenaceae 28216|Betaproteobacteria G Phosphoglycolate phosphatase gph - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 EH3_k127_5524189_1 522306.CAP2UW1_3192 5.513e-186 589.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VHEI@28216|Betaproteobacteria,1KQHG@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria IQ AMP-binding enzyme C-terminal domain - - - - - - - - - - - - AMP-binding,AMP-binding_C EH3_k127_5524189_5 742823.HMPREF9465_00480 1.024e-47 175.0 COG0589@1|root,COG0589@2|Bacteria,1MZ3K@1224|Proteobacteria,2VQAE@28216|Betaproteobacteria,4PR13@995019|Sutterellaceae 28216|Betaproteobacteria T Universal stress protein family - - - - - - - - - - - - Usp EH3_k127_5524189_3 1217718.ALOU01000069_gene4753 2.065e-74 274.0 COG1179@1|root,COG1179@2|Bacteria,1MWXR@1224|Proteobacteria,2VJPP@28216|Betaproteobacteria,1K3J7@119060|Burkholderiaceae 28216|Betaproteobacteria H PFAM UBA THIF-type NAD FAD binding protein moeB - - ko:K22132 - - - - ko00000,ko03016 - - - ThiF EH3_k127_5524189_2 983917.RGE_05160 1.427e-93 321.0 COG2979@1|root,COG2979@2|Bacteria,1R221@1224|Proteobacteria,2WI84@28216|Betaproteobacteria 28216|Betaproteobacteria S Protein of unknown function (DUF533) - - - - - - - - - - - - DUF533 EH3_k127_5524189_4 1000565.METUNv1_03876 1.323e-57 212.0 COG0664@1|root,COG0664@2|Bacteria,1R6BV@1224|Proteobacteria,2VN3A@28216|Betaproteobacteria,2KVAG@206389|Rhodocyclales 206389|Rhodocyclales K COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases nnr - - ko:K01420 - - - - ko00000,ko03000 - - - HTH_Crp_2,cNMP_binding EH3_k127_5524189_6 1123487.KB892868_gene1107 1.637e-21 94.0 2EGD6@1|root,33A4Z@2|Bacteria,1N733@1224|Proteobacteria,2VVS2@28216|Betaproteobacteria,2KX8R@206389|Rhodocyclales 206389|Rhodocyclales S Protein of unknown function (DUF2892) - - - - - - - - - - - - DUF2892 EH3_k127_5524189_0 887898.HMPREF0551_1633 3.416e-216 675.0 COG1282@1|root,COG1282@2|Bacteria,1MUP4@1224|Proteobacteria,2VIDR@28216|Betaproteobacteria,1K2V7@119060|Burkholderiaceae 28216|Betaproteobacteria C The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane pntB - 1.6.1.2 ko:K00325 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - PNTB EH3_k127_5541646_7 1286093.C266_09137 1.263e-74 258.0 COG1309@1|root,COG1309@2|Bacteria,1MWF7@1224|Proteobacteria,2VQ4C@28216|Betaproteobacteria,1K3TI@119060|Burkholderiaceae 28216|Betaproteobacteria K PFAM regulatory protein TetR slmA - - ko:K05501 - - - - ko00000,ko03000,ko03036 - - - TetR_N EH3_k127_5541646_18 365046.Rta_20470 7.07e-32 131.0 COG1495@1|root,COG1495@2|Bacteria,1RIJE@1224|Proteobacteria,2VREE@28216|Betaproteobacteria,4ADX3@80864|Comamonadaceae 28216|Betaproteobacteria O Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein dsbB - - ko:K03611 - - - - ko00000,ko03110 5.A.2.1 - - DsbB EH3_k127_5541646_5 159087.Daro_0606 2.671e-103 342.0 COG0476@1|root,COG0476@2|Bacteria,1MW7H@1224|Proteobacteria,2VI1U@28216|Betaproteobacteria,2KUF5@206389|Rhodocyclales 206389|Rhodocyclales H COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 thiF - 2.7.7.80 ko:K21029 ko04122,map04122 - R07459 RC00043 ko00000,ko00001,ko01000 - - - ThiF EH3_k127_5541646_1 1000565.METUNv1_02930 2.491e-173 556.0 COG0793@1|root,COG0793@2|Bacteria,1MU39@1224|Proteobacteria,2VJ86@28216|Betaproteobacteria,2KUHV@206389|Rhodocyclales 206389|Rhodocyclales M Belongs to the peptidase S41A family - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 EH3_k127_5541646_8 292415.Tbd_2393 8.69e-73 262.0 COG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,2VIV9@28216|Betaproteobacteria,1KRNK@119069|Hydrogenophilales 119069|Hydrogenophilales D Peptidase family M23 - - - - - - - - - - - - Peptidase_M23 EH3_k127_5541646_2 568706.BN118_3462 1.978e-127 411.0 COG0588@1|root,COG0588@2|Bacteria,1MUVE@1224|Proteobacteria,2VHEK@28216|Betaproteobacteria,3T1HS@506|Alcaligenaceae 28216|Betaproteobacteria G Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily gpmA - 5.4.2.11 ko:K01834 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - His_Phos_1 EH3_k127_5541646_17 1217718.ALOU01000038_gene3397 4.082e-34 136.0 COG0607@1|root,COG0607@2|Bacteria,1MZ83@1224|Proteobacteria,2VU3D@28216|Betaproteobacteria,1K7Q4@119060|Burkholderiaceae 28216|Betaproteobacteria P PFAM Rhodanese domain protein glpE - 2.8.1.1,2.8.1.2 ko:K01011 ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122 - R01931,R03105,R03106 RC00214 ko00000,ko00001,ko01000 - - - Rhodanese EH3_k127_5541646_19 1005048.CFU_4062 1.009e-31 130.0 COG0695@1|root,COG0695@2|Bacteria,1N72P@1224|Proteobacteria,2VU2J@28216|Betaproteobacteria,474TH@75682|Oxalobacteraceae 28216|Betaproteobacteria O Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins grxC - - ko:K03676 - - - - ko00000,ko03110 - - - Glutaredoxin EH3_k127_5541646_13 760117.JN27_21600 4.025e-56 201.0 COG1952@1|root,COG1952@2|Bacteria,1RI75@1224|Proteobacteria,2VQ1Q@28216|Betaproteobacteria,4741I@75682|Oxalobacteraceae 28216|Betaproteobacteria U One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA secB - - ko:K03071 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03110 3.A.5 - - SecB EH3_k127_5541646_4 204773.HEAR2970 1.351e-104 351.0 COG0240@1|root,COG0240@2|Bacteria,1MUU3@1224|Proteobacteria,2VJ91@28216|Betaproteobacteria,472MZ@75682|Oxalobacteraceae 28216|Betaproteobacteria I Glycerol-3-phosphate dehydrogenase gpsA - 1.1.1.94 ko:K00057 ko00564,ko01110,map00564,map01110 - R00842,R00844 RC00029 ko00000,ko00001,ko01000 - - - NAD_Gly3P_dh_C,NAD_Gly3P_dh_N EH3_k127_5541646_12 384676.PSEEN4924 6.931e-57 213.0 COG1611@1|root,COG1611@2|Bacteria,1RD59@1224|Proteobacteria,1S4C3@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Belongs to the LOG family yvdD - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox EH3_k127_5541646_0 1122603.ATVI01000010_gene1062 4.58e-213 668.0 COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,1T1GA@1236|Gammaproteobacteria,1X3FT@135614|Xanthomonadales 135614|Xanthomonadales E O-acetylhomoserine - - 2.5.1.49 ko:K01740 ko00270,ko01100,map00270,map01100 - R01287,R04859 RC00020,RC02821,RC02848 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP EH3_k127_5541646_10 272560.BPSL0449 1.776e-69 241.0 COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,2VR5W@28216|Betaproteobacteria,1K3CQ@119060|Burkholderiaceae 28216|Betaproteobacteria J Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide trmL - 2.1.1.207 ko:K03216 - - - - ko00000,ko01000,ko03016 - - - SpoU_methylase EH3_k127_5541646_22 1163407.UU7_11040 9.633e-07 60.0 2DP0A@1|root,3300Q@2|Bacteria,1N78Y@1224|Proteobacteria,1SH09@1236|Gammaproteobacteria,1X7P6@135614|Xanthomonadales 135614|Xanthomonadales S Sporulation related domain - - - - - - - - - - - - SPOR EH3_k127_5541646_16 1120999.JONM01000006_gene2478 2.182e-35 150.0 COG1521@1|root,COG1521@2|Bacteria,1MUYA@1224|Proteobacteria,2VK1G@28216|Betaproteobacteria,2KQC6@206351|Neisseriales 206351|Neisseriales H Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis coaX - 2.7.1.33,6.3.4.15 ko:K01947,ko:K03525 ko00770,ko00780,ko01100,map00770,map00780,map01100 M00120 R01074,R02971,R03018,R04391,R05145 RC00002,RC00017,RC00043,RC00070,RC00096,RC02896 ko00000,ko00001,ko00002,ko01000 - - - BPL_C,BPL_LplA_LipB,Pan_kinase EH3_k127_5541646_15 266264.Rmet_0073 5.434e-41 162.0 COG0340@1|root,COG0340@2|Bacteria,1MWCC@1224|Proteobacteria,2VNXD@28216|Betaproteobacteria,1KGPS@119060|Burkholderiaceae 28216|Betaproteobacteria H biotin acetyl-CoA-carboxylase ligase birA - 6.3.4.15 ko:K03524 ko00780,ko01100,map00780,map01100 - R01074,R05145 RC00043,RC00070,RC00096,RC02896 ko00000,ko00001,ko01000,ko03000 - - - BPL_C,BPL_LplA_LipB,HTH_11 EH3_k127_5541646_9 1500894.JQNN01000001_gene3359 1.298e-69 262.0 COG5652@1|root,COG5652@2|Bacteria,1PJUW@1224|Proteobacteria,2VHEZ@28216|Betaproteobacteria,473SR@75682|Oxalobacteraceae 28216|Betaproteobacteria S VanZ like family - - - - - - - - - - - - VanZ EH3_k127_5541646_14 1123354.AUDR01000013_gene589 1.318e-46 170.0 COG3411@1|root,COG3411@2|Bacteria,1MZR4@1224|Proteobacteria,2VTY1@28216|Betaproteobacteria,1KT79@119069|Hydrogenophilales 119069|Hydrogenophilales C Ferredoxin - - - - - - - - - - - - 2Fe-2S_thioredx EH3_k127_5541646_11 402626.Rpic_0184 6.017e-67 239.0 COG2945@1|root,COG2945@2|Bacteria,1MUDY@1224|Proteobacteria,2VJ8M@28216|Betaproteobacteria,1K1NE@119060|Burkholderiaceae 28216|Betaproteobacteria S Alpha beta - - - ko:K07018 - - - - ko00000 - - - Hydrolase_4,Peptidase_S15 EH3_k127_5541646_23 159087.Daro_3188 4.376e-06 55.0 2BX44@1|root,32VIR@2|Bacteria,1N2JK@1224|Proteobacteria,2VVHA@28216|Betaproteobacteria,2KXAF@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - EH3_k127_5541646_3 1159870.KB907784_gene1052 4.291e-105 357.0 COG0115@1|root,COG0115@2|Bacteria,1MVAT@1224|Proteobacteria,2VIVK@28216|Betaproteobacteria,3T1DE@506|Alcaligenaceae 28216|Betaproteobacteria EH Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase dat - 2.6.1.21 ko:K00824 ko00310,ko00330,ko00360,ko00472,ko00473,ko01100,map00310,map00330,map00360,map00472,map00473,map01100 - R01148,R01582,R02459,R02851,R02924,R05053 RC00006,RC00008,RC00025 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_4 EH3_k127_5541646_20 748247.AZKH_0140 7.478e-28 124.0 COG2921@1|root,COG2921@2|Bacteria,1RGV5@1224|Proteobacteria,2VTY5@28216|Betaproteobacteria,2KWZM@206389|Rhodocyclales 206389|Rhodocyclales S Belongs to the UPF0250 family - - - ko:K09158 - - - - ko00000 - - - DUF493 EH3_k127_5541646_6 365046.Rta_03510 1.353e-78 274.0 COG0321@1|root,COG0321@2|Bacteria,1MU6A@1224|Proteobacteria,2VQ1Y@28216|Betaproteobacteria,4ABST@80864|Comamonadaceae 28216|Betaproteobacteria H Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate lipB - 2.3.1.181 ko:K03801 ko00785,ko01100,map00785,map01100 - R07766,R07769 RC00039,RC00992,RC02867 ko00000,ko00001,ko01000 - - - BPL_LplA_LipB EH3_k127_5541646_21 1538295.JY96_13400 4.76e-19 93.0 COG0320@1|root,COG0320@2|Bacteria,1MVRD@1224|Proteobacteria,2VIFE@28216|Betaproteobacteria,1KJ50@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives lipA - 2.8.1.8 ko:K03644 ko00785,ko01100,map00785,map01100 - R07767,R07768 RC01978 ko00000,ko00001,ko01000 - - - LIAS_N,Radical_SAM EH3_k127_5570300_4 1095769.CAHF01000013_gene3316 2.265e-45 166.0 COG0469@1|root,COG0469@2|Bacteria,1MU21@1224|Proteobacteria,2VHN5@28216|Betaproteobacteria,476W3@75682|Oxalobacteraceae 28216|Betaproteobacteria G Pyruvate kinase, barrel domain pykA - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C EH3_k127_5570300_1 94624.Bpet3600 4.255e-185 584.0 COG0191@1|root,COG0191@2|Bacteria,1MURX@1224|Proteobacteria,2VHGI@28216|Betaproteobacteria,3T1MN@506|Alcaligenaceae 28216|Betaproteobacteria G catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis fba - 4.1.2.13 ko:K01624 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003,M00165,M00167,M00344,M00345 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - F_bP_aldolase EH3_k127_5570300_3 1265502.KB905933_gene2113 3.715e-76 265.0 COG3777@1|root,COG3777@2|Bacteria,1P96N@1224|Proteobacteria,2VIUS@28216|Betaproteobacteria,4AAUD@80864|Comamonadaceae 28216|Betaproteobacteria S N-terminal half of MaoC dehydratase - - 4.2.1.153,4.2.1.56 ko:K09709,ko:K18291 ko00660,ko00720,ko01120,ko01200,map00660,map00720,map01120,map01200 M00376 R02491,R09282 RC00730,RC02479 ko00000,ko00001,ko00002,ko01000 - - - MaoC_dehydrat_N EH3_k127_5570300_0 1163617.SCD_n02724 0.0 1358.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2VJK5@28216|Betaproteobacteria 28216|Betaproteobacteria G pyruvate phosphate dikinase ppdK - 2.7.9.1,2.7.9.2 ko:K01006,ko:K01007 ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200 M00169,M00171,M00172,M00173,M00374 R00199,R00206 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N EH3_k127_5570300_2 977880.RALTA_B0598 3.983e-99 327.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2VHMS@28216|Betaproteobacteria,1K0MY@119060|Burkholderiaceae 28216|Betaproteobacteria I Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation - - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N EH3_k127_5574238_6 864073.HFRIS_007631 1.687e-78 290.0 COG2267@1|root,COG2267@2|Bacteria,1QTAP@1224|Proteobacteria,2VMEV@28216|Betaproteobacteria,47249@75682|Oxalobacteraceae 28216|Betaproteobacteria I Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 EH3_k127_5574238_2 1095769.CAHF01000010_gene1221 2.586e-247 773.0 COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2VJ5E@28216|Betaproteobacteria,475GZ@75682|Oxalobacteraceae 28216|Betaproteobacteria I AMP-binding enzyme C-terminal domain bclA_2 - 6.2.1.1 ko:K01895 ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200 M00357 R00235,R00236,R00316,R00926,R01354 RC00004,RC00012,RC00043,RC00070,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000,ko01004 - - - AMP-binding,AMP-binding_C EH3_k127_5574238_4 1231391.AMZF01000003_gene3152 5.871e-91 306.0 COG2833@1|root,COG2833@2|Bacteria,1MW0V@1224|Proteobacteria,2VIX0@28216|Betaproteobacteria,3T23I@506|Alcaligenaceae 28216|Betaproteobacteria S Protein of unknown function (DUF455) - - - - - - - - - - - - DUF455 EH3_k127_5574238_9 326297.Sama_2179 1.03e-34 148.0 COG0346@1|root,COG0346@2|Bacteria,1N08M@1224|Proteobacteria,1SBEZ@1236|Gammaproteobacteria,2QC5U@267890|Shewanellaceae 1236|Gammaproteobacteria E COG0346 Lactoylglutathione lyase and related lyases - - - - - - - - - - - - Glyoxalase EH3_k127_5574238_7 420662.Mpe_B0537 3.66e-77 273.0 COG1802@1|root,COG1802@2|Bacteria,1MY2M@1224|Proteobacteria,2VK5T@28216|Betaproteobacteria,1KNQK@119065|unclassified Burkholderiales 28216|Betaproteobacteria K FCD - - - - - - - - - - - - FCD,GntR EH3_k127_5574238_8 78245.Xaut_5018 1.73e-67 232.0 COG2185@1|root,COG2185@2|Bacteria,1N56M@1224|Proteobacteria,2UEAN@28211|Alphaproteobacteria 28211|Alphaproteobacteria I COG2185 Methylmalonyl-CoA mutase, C-terminal domain subunit (cobalamin-binding) - - 5.4.99.2,5.4.99.64 ko:K01849,ko:K20907 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00375,M00376,M00741 R00833 RC00395 ko00000,ko00001,ko00002,ko01000 - - - B12-binding EH3_k127_5574238_1 420662.Mpe_B0539 4.953e-275 850.0 COG1541@1|root,COG1541@2|Bacteria,1MV1W@1224|Proteobacteria,2VI46@28216|Betaproteobacteria,1KJ6S@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) - - 6.2.1.30 ko:K01912 ko00360,ko01120,ko05111,map00360,map01120,map05111 - R02539 RC00004,RC00014 ko00000,ko00001,ko01000 - - - AMP-binding,AMP-binding_C_2 EH3_k127_5574238_3 78245.Xaut_5020 3.323e-132 428.0 COG1703@1|root,COG1703@2|Bacteria,1MVI0@1224|Proteobacteria,2TS96@28211|Alphaproteobacteria,3F0BW@335928|Xanthobacteraceae 28211|Alphaproteobacteria E TIGRFAM LAO AO transport system ATPase - - - ko:K07588 - - - - ko00000,ko01000 - - - ArgK EH3_k127_5574238_0 420662.Mpe_B0541 5.04e-322 990.0 COG1884@1|root,COG1884@2|Bacteria,1MUXX@1224|Proteobacteria,2VIT2@28216|Betaproteobacteria,1KK96@119065|unclassified Burkholderiales 28216|Betaproteobacteria I Methylmalonyl-CoA mutase icmF - 5.4.99.2,5.4.99.63,5.4.99.64 ko:K01847,ko:K01848,ko:K14447,ko:K20906 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00373,M00375,M00376,M00741 R00833,R09292 RC00395,RC02835 ko00000,ko00001,ko00002,ko01000 - - - ArgK,B12-binding,MM_CoA_mutase EH3_k127_5574238_5 748247.AZKH_p0291 1.498e-88 301.0 COG0028@1|root,COG0028@2|Bacteria,1MXDW@1224|Proteobacteria,2VI39@28216|Betaproteobacteria 28216|Betaproteobacteria EH Belongs to the TPP enzyme family - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N EH3_k127_5577268_1 671143.DAMO_2283 2.337e-260 812.0 COG0474@1|root,COG0474@2|Bacteria,2NNSC@2323|unclassified Bacteria 2|Bacteria P Cation transporter/ATPase, N-terminus - - 3.6.3.8 ko:K01537 - - - - ko00000,ko01000 3.A.3.2 - - Cation_ATPase,Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3 EH3_k127_5577268_0 472759.Nhal_1582 0.0 1026.0 COG0045@1|root,COG1042@1|root,COG1247@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,COG1247@2|Bacteria,1MW98@1224|Proteobacteria,1RPXX@1236|Gammaproteobacteria,1X078@135613|Chromatiales 135613|Chromatiales C CoA binding domain - - - ko:K09181 - - - - ko00000 - - - ATP-grasp_5,CoA_binding_2,Succ_CoA_lig EH3_k127_5577268_10 497321.C664_07233 1.731e-26 120.0 COG0526@1|root,COG0526@2|Bacteria,1N728@1224|Proteobacteria,2VU78@28216|Betaproteobacteria,2KX1D@206389|Rhodocyclales 206389|Rhodocyclales CO Thioredoxin domain - - - - - - - - - - - - Thioredoxin_3 EH3_k127_5577268_2 85643.Tmz1t_1855 2.988e-224 704.0 COG0701@1|root,COG0701@2|Bacteria,1MUN8@1224|Proteobacteria,2VNTF@28216|Betaproteobacteria,2KVB8@206389|Rhodocyclales 206389|Rhodocyclales S Predicted permease - - - ko:K07089 - - - - ko00000 - - - ArsP_1 EH3_k127_5577268_5 983917.RGE_20810 7.63e-115 377.0 COG0500@1|root,COG2226@2|Bacteria,1MVXN@1224|Proteobacteria,2VQVG@28216|Betaproteobacteria 28216|Betaproteobacteria Q Methyltransferase type 11 arsM - 2.1.1.137 ko:K07755 - - - - ko00000,ko01000 - - - Methyltransf_31 EH3_k127_5577268_8 1245471.PCA10_30640 1.593e-40 160.0 COG3025@1|root,COG3025@2|Bacteria 2|Bacteria S triphosphatase activity ygiF - 3.6.1.25 ko:K18446 - - - - ko00000,ko01000 - - - CHAD,CYTH EH3_k127_5577268_9 1144319.PMI16_02435 1.446e-34 134.0 2CC0C@1|root,32RUG@2|Bacteria,1MZVQ@1224|Proteobacteria,2VUAQ@28216|Betaproteobacteria,474XD@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF3297) - - - - - - - - - - - - DUF3297 EH3_k127_5577268_6 420662.Mpe_A1564 2.487e-82 280.0 COG2761@1|root,COG2761@2|Bacteria,1NXUB@1224|Proteobacteria,2VNUN@28216|Betaproteobacteria,1KKKC@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q DSBA oxidoreductase - - - - - - - - - - - - DSBA EH3_k127_5577268_7 522306.CAP2UW1_1513 1.083e-59 213.0 COG2930@1|root,COG2930@2|Bacteria,1RAIB@1224|Proteobacteria,2VT65@28216|Betaproteobacteria 28216|Betaproteobacteria S Las17-binding protein actin regulator - - - - - - - - - - - - Ysc84 EH3_k127_5577268_3 1134912.AJTV01000047_gene3499 5.087e-223 709.0 COG0457@1|root,COG1413@1|root,COG3303@1|root,COG0457@2|Bacteria,COG1413@2|Bacteria,COG3303@2|Bacteria,1MX2U@1224|Proteobacteria,2TVI2@28211|Alphaproteobacteria,36ZR3@31993|Methylocystaceae 28211|Alphaproteobacteria C Doubled CXXCH motif (Paired_CXXCH_1) - - - - - - - - - - - - Cytochrome_C554,HEAT_2,Paired_CXXCH_1,TPR_14,TPR_16,TPR_19,TPR_2,TPR_8 EH3_k127_5589067_10 667632.KB890185_gene478 7.529e-25 108.0 COG3360@1|root,COG3360@2|Bacteria,1PW6C@1224|Proteobacteria,2VXDE@28216|Betaproteobacteria,1KB0W@119060|Burkholderiaceae 28216|Betaproteobacteria S Dodecin - - - ko:K09165 - - - - ko00000 - - - Dodecin EH3_k127_5589067_11 595537.Varpa_0153 3.088e-09 64.0 COG2015@1|root,COG2015@2|Bacteria,1MU82@1224|Proteobacteria,2VJ5N@28216|Betaproteobacteria,4AD5B@80864|Comamonadaceae 28216|Betaproteobacteria Q Alkyl sulfatase C-terminal - - - - - - - - - - - - Alkyl_sulf_C,Alkyl_sulf_dimr,GMC_oxred_C,GMC_oxred_N,Lactamase_B EH3_k127_5589067_3 675816.VIA_002818 2.568e-73 258.0 COG1237@1|root,COG1237@2|Bacteria,1NK2I@1224|Proteobacteria,1RSGM@1236|Gammaproteobacteria,1XVHI@135623|Vibrionales 135623|Vibrionales S COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II - - 2.5.1.105 ko:K06897 ko00790,map00790 - R10339 RC00121 ko00000,ko00001,ko01000 - - - Lactamase_B EH3_k127_5589067_5 1333856.L686_12840 6.918e-51 187.0 COG0446@1|root,COG0446@2|Bacteria,1QU0H@1224|Proteobacteria,1S8PV@1236|Gammaproteobacteria,1Z2TJ@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria S SnoaL-like domain - - - - - - - - - - - - SnoaL_2 EH3_k127_5589067_9 1354722.JQLS01000004_gene4221 1.911e-28 133.0 COG2050@1|root,COG2050@2|Bacteria,1RH35@1224|Proteobacteria,2U5QW@28211|Alphaproteobacteria 28211|Alphaproteobacteria Q phenylacetic acid degradation protein paaD paaI - - ko:K02614 ko00360,map00360 - R09840 RC00004,RC00014 ko00000,ko00001,ko01000 - - - 4HBT EH3_k127_5589067_2 1031711.RSPO_c01685 1.665e-77 282.0 COG0778@1|root,COG0778@2|Bacteria,1PG8V@1224|Proteobacteria,2VKIZ@28216|Betaproteobacteria,1K24T@119060|Burkholderiaceae 28216|Betaproteobacteria C nitroreductase nfnB - - - - - - - - - - - Nitroreductase EH3_k127_5589067_1 76114.ebA2092 1.222e-85 306.0 COG1703@1|root,COG1975@1|root,COG1703@2|Bacteria,COG1975@2|Bacteria,1MVI0@1224|Proteobacteria,2VIRF@28216|Betaproteobacteria,2KVDF@206389|Rhodocyclales 28216|Betaproteobacteria E periplasmic protein kinase ArgK and related GTPases of G3E family - - - ko:K07588 - - - - ko00000,ko01000 - - - ArgK EH3_k127_5589067_0 110319.CF8_0950 5.348e-241 756.0 COG1884@1|root,COG1884@2|Bacteria,2GM65@201174|Actinobacteria,4DPNX@85009|Propionibacteriales 201174|Actinobacteria I Methylmalonyl-CoA mutase - - 5.4.99.2 ko:K01848 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00375,M00376,M00741 R00833 RC00395 ko00000,ko00001,ko00002,ko01000 - - - MM_CoA_mutase EH3_k127_5589067_7 78245.Xaut_5044 5.256e-46 179.0 COG2185@1|root,COG2185@2|Bacteria,1NVW6@1224|Proteobacteria,2US8B@28211|Alphaproteobacteria 28211|Alphaproteobacteria I B12 binding domain - GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0036094,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046906,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901363,GO:1901564 5.4.99.2 ko:K01849 ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200 M00375,M00376,M00741 R00833 RC00395 ko00000,ko00001,ko00002,ko01000 - - - B12-binding EH3_k127_5589067_6 1110502.TMO_0530 1.902e-48 180.0 COG1309@1|root,COG1309@2|Bacteria,1N2QP@1224|Proteobacteria,2UD2J@28211|Alphaproteobacteria,2JX7S@204441|Rhodospirillales 204441|Rhodospirillales K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N EH3_k127_5589067_8 663610.JQKO01000012_gene3096 1.146e-41 158.0 COG0575@1|root,COG0575@2|Bacteria,1N4I3@1224|Proteobacteria,2U7WC@28211|Alphaproteobacteria,3NCGR@45404|Beijerinckiaceae 28211|Alphaproteobacteria I CDP-archaeol synthase - - 2.7.7.67 ko:K19664 ko00564,map00564 - R08966 RC00002 ko00000,ko00001,ko01000 - - - CarS-like EH3_k127_5589067_4 768671.ThimaDRAFT_0738 9.766e-69 237.0 COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,1RZ45@1236|Gammaproteobacteria,1WWNT@135613|Chromatiales 135613|Chromatiales S Metallophosphoesterase - - - ko:K07098 - - - - ko00000 - - - Metallophos,Metallophos_2 EH3_k127_5595074_2 204773.HEAR3292 3.97e-59 206.0 COG1173@1|root,COG1173@2|Bacteria,1MUG0@1224|Proteobacteria,2VIN2@28216|Betaproteobacteria,478M5@75682|Oxalobacteraceae 28216|Betaproteobacteria P ABC-type dipeptide oligopeptide nickel transport system, permease component dppC1 - - ko:K02034 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1,OppC_N EH3_k127_5595074_0 1510531.JQJJ01000001_gene4475 9.097e-133 430.0 COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3K2XD@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria EP Oligopeptide/dipeptide transporter, C-terminal region - - - ko:K02031 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - ABC_tran,oligo_HPY EH3_k127_5595074_1 977880.RALTA_A2749 8.481e-100 338.0 COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2W19X@28216|Betaproteobacteria,1K0Z4@119060|Burkholderiaceae 28216|Betaproteobacteria P Belongs to the ABC transporter superfamily - - - ko:K02032 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - ABC_tran,oligo_HPY EH3_k127_5606223_1 519989.ECTPHS_07187 4.142e-30 130.0 COG3381@1|root,COG3381@2|Bacteria 2|Bacteria S protein complex oligomerization dmsD GO:0001539,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006928,GO:0006950,GO:0006974,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0019897,GO:0019898,GO:0031234,GO:0033554,GO:0040011,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051674,GO:0051716,GO:0071944,GO:0071973,GO:0071978,GO:0097588,GO:0098552,GO:0098562 - - - - - - - - - - Nitrate_red_del EH3_k127_5606223_0 1255043.TVNIR_0947 6.012e-94 320.0 COG5557@1|root,COG5557@2|Bacteria,1R54P@1224|Proteobacteria 1224|Proteobacteria C PFAM Polysulphide reductase, NrfD - - - ko:K00185 - - - - ko00000 5.A.3 - - NrfD EH3_k127_5606223_2 1255043.TVNIR_0948 1.995e-06 50.0 COG0437@1|root,COG0437@2|Bacteria,1MU1B@1224|Proteobacteria,1T266@1236|Gammaproteobacteria,1X25K@135613|Chromatiales 135613|Chromatiales C 4Fe-4S dicluster domain - - - - - - - - - - - - Fer4_11,Fer4_4 EH3_k127_5608142_8 742823.HMPREF9465_00630 2.299e-21 96.0 COG0569@1|root,COG0569@2|Bacteria,1MW8R@1224|Proteobacteria,2VIH1@28216|Betaproteobacteria,4PQU5@995019|Sutterellaceae 28216|Betaproteobacteria P Putative NAD(P)-binding trkA - - ko:K03499 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkA_C,TrkA_N EH3_k127_5608142_5 243160.BMA0149 2.787e-81 277.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2VKD8@28216|Betaproteobacteria,1K3GV@119060|Burkholderiaceae 28216|Betaproteobacteria T response regulator ntrX - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activ_2 EH3_k127_5608142_0 1095769.CAHF01000014_gene3120 2.79e-208 672.0 COG5000@1|root,COG5000@2|Bacteria,1MWKZ@1224|Proteobacteria,2VIDI@28216|Betaproteobacteria,472UI@75682|Oxalobacteraceae 28216|Betaproteobacteria T Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation ntrY - - - - - - - - - - - HAMP,HATPase_c,HisKA,PAS_4,PAS_7,PAS_8 EH3_k127_5608142_7 272560.BPSL0126 5.251e-53 193.0 29CX4@1|root,2ZZV8@2|Bacteria,1RFY7@1224|Proteobacteria,2VR98@28216|Betaproteobacteria,1K464@119060|Burkholderiaceae 28216|Betaproteobacteria S signal peptide protein - - - - - - - - - - - - DUF4390 EH3_k127_5608142_4 469610.HMPREF0189_01496 6.242e-97 338.0 COG0144@1|root,COG0144@2|Bacteria,1MWPE@1224|Proteobacteria,2VI4V@28216|Betaproteobacteria,1KJDF@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA sun - 2.1.1.176 ko:K03500 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,NusB EH3_k127_5608142_3 1123504.JQKD01000006_gene1524 1.721e-101 340.0 COG0223@1|root,COG0223@2|Bacteria,1MU4Q@1224|Proteobacteria,2VIS2@28216|Betaproteobacteria,4AC2V@80864|Comamonadaceae 28216|Betaproteobacteria J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus fmt - 2.1.2.9 ko:K00604 ko00670,ko00970,map00670,map00970 - R03940 RC00026,RC00165 ko00000,ko00001,ko01000 - - - Formyl_trans_C,Formyl_trans_N EH3_k127_5608142_2 983917.RGE_07330 2.542e-123 412.0 COG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,2VMJZ@28216|Betaproteobacteria,1KN20@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q Protein of unknown function (DUF1298) - - - - - - - - - - - - DUF1298,WES_acyltransf EH3_k127_5608142_6 522306.CAP2UW1_1606 2.754e-75 265.0 COG2267@1|root,COG2267@2|Bacteria,1R41P@1224|Proteobacteria,2VNV3@28216|Betaproteobacteria 28216|Betaproteobacteria I PFAM alpha beta hydrolase fold - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4 EH3_k127_5608142_1 666685.R2APBS1_3206 1.881e-189 602.0 COG5659@1|root,COG5659@2|Bacteria,1MXSV@1224|Proteobacteria,1SBWP@1236|Gammaproteobacteria,1XA34@135614|Xanthomonadales 135614|Xanthomonadales L DDE superfamily endonuclease - - - - - - - - - - - - DDE_5,DDE_Tnp_1 EH3_k127_5608142_9 358220.C380_02420 1.281e-11 66.0 COG0346@1|root,COG0346@2|Bacteria,1RH79@1224|Proteobacteria,2VTN3@28216|Betaproteobacteria,4AFC0@80864|Comamonadaceae 28216|Betaproteobacteria E Glyoxalase-like domain - - - - - - - - - - - - Glyoxalase EH3_k127_5613053_0 469610.HMPREF0189_01400 8.849e-299 927.0 COG0480@1|root,COG0480@2|Bacteria,1MVVY@1224|Proteobacteria,2VKWB@28216|Betaproteobacteria,1KJI7@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Elongation factor G, domain IV - - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU EH3_k127_561330_3 929556.Solca_2311 1.473e-88 294.0 COG1830@1|root,COG1830@2|Bacteria,4NEUM@976|Bacteroidetes,1IPKA@117747|Sphingobacteriia 976|Bacteroidetes G Aldolase fbaB - 4.1.2.13 ko:K11645 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - DeoC EH3_k127_561330_6 870187.Thini_3696 6.257e-39 153.0 COG0558@1|root,COG0558@2|Bacteria,1MZ8B@1224|Proteobacteria,1SAHT@1236|Gammaproteobacteria,460YF@72273|Thiotrichales 72273|Thiotrichales I CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase - - 2.7.8.41 ko:K08744 ko00564,ko01100,map00564,map01100 - R02030 RC00002,RC00017 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf EH3_k127_561330_1 768671.ThimaDRAFT_3709 6.25e-90 306.0 COG0656@1|root,COG0656@2|Bacteria,1MX6S@1224|Proteobacteria,1RQA1@1236|Gammaproteobacteria,1X0AG@135613|Chromatiales 135613|Chromatiales S Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red EH3_k127_561330_2 977880.RALTA_A0472 9.896e-90 306.0 COG0697@1|root,COG0697@2|Bacteria,1R6KH@1224|Proteobacteria,2VNEM@28216|Betaproteobacteria,1K5AJ@119060|Burkholderiaceae 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_561330_9 1229205.BUPH_04074 5.406e-17 82.0 COG3313@1|root,COG3313@2|Bacteria,1NGD5@1224|Proteobacteria,2VXYJ@28216|Betaproteobacteria,1KAEA@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function (DUF1289) - - - ko:K06938 - - - - ko00000 - - - DUF1289 EH3_k127_561330_4 1095769.CAHF01000005_gene1498 2.382e-58 214.0 COG3917@1|root,COG3917@2|Bacteria,1RJFB@1224|Proteobacteria,2VPYN@28216|Betaproteobacteria 28216|Betaproteobacteria Q 2-hydroxychromene-2-carboxylate isomerase - - - - - - - - - - - - DSBA EH3_k127_561330_7 1169143.KB911036_gene4843 6.767e-35 149.0 COG2030@1|root,COG2030@2|Bacteria,1NDST@1224|Proteobacteria,2VY7N@28216|Betaproteobacteria,1K2TC@119060|Burkholderiaceae 28216|Betaproteobacteria I PFAM MaoC domain protein dehydratase - - - - - - - - - - - - DUF1289,MaoC_dehydrat_N,MaoC_dehydratas EH3_k127_561330_0 977880.RALTA_A0133 1.774e-98 330.0 COG0491@1|root,COG0491@2|Bacteria,1NCIF@1224|Proteobacteria,2VJVR@28216|Betaproteobacteria,1K41C@119060|Burkholderiaceae 28216|Betaproteobacteria S beta-lactamase - - - - - - - - - - - - Lactamase_B EH3_k127_561330_8 697282.Mettu_1210 1.731e-26 120.0 2DP2V@1|root,330AH@2|Bacteria,1R3EE@1224|Proteobacteria,1T670@1236|Gammaproteobacteria,1XGE6@135618|Methylococcales 135618|Methylococcales S Protein of unknown function (DUF3455) - - - - - - - - - - - - DUF3455 EH3_k127_5662834_0 1095769.CAHF01000014_gene2918 9.041e-249 779.0 COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2VIEX@28216|Betaproteobacteria,4727V@75682|Oxalobacteraceae 28216|Betaproteobacteria EH Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ilvG - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N EH3_k127_5662834_1 640081.Dsui_2303 2.009e-21 101.0 COG3235@1|root,COG3235@2|Bacteria,1RDHR@1224|Proteobacteria,2VRKF@28216|Betaproteobacteria,2KWF3@206389|Rhodocyclales 206389|Rhodocyclales S Cobalt uptake substrate-specific transmembrane region - - - - - - - - - - - - CbiM EH3_k127_5676393_2 344747.PM8797T_12006 3.841e-90 307.0 COG4658@1|root,COG4658@2|Bacteria,2IY8E@203682|Planctomycetes 203682|Planctomycetes C NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol nqrB - - - - - - - - - - - NQR2_RnfD_RnfE EH3_k127_5676393_1 1028307.EAE_11890 3.36e-142 466.0 COG1726@1|root,COG1726@2|Bacteria,1MU36@1224|Proteobacteria,1RPU1@1236|Gammaproteobacteria,3X31C@547|Enterobacter 1236|Gammaproteobacteria C NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol nqrA GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008150,GO:0008152,GO:0015672,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030001,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0051179,GO:0051234,GO:0055114,GO:0098796,GO:1902494 1.6.5.8 ko:K00346 - - - - ko00000,ko01000 - - - NQRA,NQRA_SLBB EH3_k127_5676393_0 1255043.TVNIR_3268 7.851e-261 814.0 COG0281@1|root,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,1RQ11@1236|Gammaproteobacteria,1WX9G@135613|Chromatiales 135613|Chromatiales C PFAM Malic enzyme, NAD binding domain - - 1.1.1.40 ko:K00029 ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200 M00169,M00172 R00216 RC00105 ko00000,ko00001,ko00002,ko01000 - - - Malic_M,malic EH3_k127_5676393_3 75379.Tint_0726 2.036e-17 94.0 COG0664@1|root,COG0664@2|Bacteria,1NI7I@1224|Proteobacteria 1224|Proteobacteria T PFAM Cyclic nucleotide-binding - - - - - - - - - - - - cNMP_binding EH3_k127_5676393_4 1379270.AUXF01000003_gene3535 5.309e-17 83.0 COG1007@1|root,COG1007@2|Bacteria,1ZUR0@142182|Gemmatimonadetes 142182|Gemmatimonadetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M EH3_k127_5689230_4 1429916.X566_06730 7.213e-17 83.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JR0N@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria IQ AMP-binding enzyme C-terminal domain fadD - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C EH3_k127_5689230_2 29581.BW37_00006 7.749e-105 372.0 COG4324@1|root,COG4324@2|Bacteria,1N0FE@1224|Proteobacteria,2VH73@28216|Betaproteobacteria,476PV@75682|Oxalobacteraceae 28216|Betaproteobacteria S Putative aminopeptidase - - - - - - - - - - - - Aminopep EH3_k127_5689230_1 864051.BurJ1DRAFT_1684 3.44e-112 379.0 COG1541@1|root,COG1541@2|Bacteria,1P22K@1224|Proteobacteria,2WGC2@28216|Betaproteobacteria,1KK0P@119065|unclassified Burkholderiales 28216|Betaproteobacteria H AMP-binding enzyme - - - - - - - - - - - - AMP-binding EH3_k127_5689230_3 402626.Rpic_0703 4.142e-20 93.0 COG4575@1|root,COG4575@2|Bacteria,1N3P5@1224|Proteobacteria,2VU7A@28216|Betaproteobacteria,1K8EH@119060|Burkholderiaceae 28216|Betaproteobacteria S Bacterial protein of unknown function (DUF883) elaB - - - - - - - - - - - DUF883 EH3_k127_5689230_0 388051.AUFE01000028_gene5003 2.111e-253 793.0 COG0243@1|root,COG0243@2|Bacteria,1NR6J@1224|Proteobacteria,2VHHZ@28216|Betaproteobacteria,1JZPN@119060|Burkholderiaceae 28216|Betaproteobacteria C Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - 1.7.2.3 ko:K07812 - - - - ko00000,ko01000,ko02000 5.A.3.4 - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding EH3_k127_570742_0 1095769.CAHF01000001_gene3510 1.417e-118 390.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1MU31@1224|Proteobacteria,2VJ57@28216|Betaproteobacteria,4724B@75682|Oxalobacteraceae 28216|Betaproteobacteria L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 EH3_k127_570742_1 887898.HMPREF0551_0329 1.154e-97 326.0 COG1611@1|root,COG1611@2|Bacteria,1MU6N@1224|Proteobacteria,2VK4I@28216|Betaproteobacteria,1JZMK@119060|Burkholderiaceae 28216|Betaproteobacteria S Belongs to the LOG family yvdD_2 - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox EH3_k127_5708366_3 1125973.JNLC01000016_gene2941 5.205e-40 153.0 COG3135@1|root,COG3135@2|Bacteria,1MUS1@1224|Proteobacteria,2TUEM@28211|Alphaproteobacteria,3JZ3J@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria Q Benzoate membrane transport protein ydcO GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K05782 - - - - ko00000,ko02000 2.A.46.1 - - BenE EH3_k127_5708366_0 388051.AUFE01000001_gene2097 1.266e-84 297.0 COG0697@1|root,COG0697@2|Bacteria,1MWSU@1224|Proteobacteria,2VHP3@28216|Betaproteobacteria,1K28Z@119060|Burkholderiaceae 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_5708366_2 1121127.JAFA01000001_gene1016 1.344e-42 165.0 COG1853@1|root,COG1853@2|Bacteria,1RDM1@1224|Proteobacteria,2VRFI@28216|Betaproteobacteria,1K1G8@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM flavin reductase domain protein, FMN-binding - - - - - - - - - - - - Flavin_Reduct EH3_k127_5708366_4 640510.BC1001_1448 8.752e-19 96.0 2D7FD@1|root,32TNY@2|Bacteria,1NAHU@1224|Proteobacteria,2VWNF@28216|Betaproteobacteria,1K7Q8@119060|Burkholderiaceae 28216|Betaproteobacteria S Domain of unknown function (DUF1992) - - - - - - - - - - - - DUF1992 EH3_k127_5708366_1 420662.Mpe_A0145 2.282e-84 286.0 COG1704@1|root,COG1704@2|Bacteria,1MVH0@1224|Proteobacteria,2VHT5@28216|Betaproteobacteria,1KK0R@119065|unclassified Burkholderiales 28216|Betaproteobacteria S LemA family lemA - - ko:K03744 - - - - ko00000 - - - LemA EH3_k127_5731005_2 1144319.PMI16_01433 8.263e-81 274.0 COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2VH8M@28216|Betaproteobacteria,472AD@75682|Oxalobacteraceae 28216|Betaproteobacteria C Glycolate oxidase subunit GlcD glcD - 1.1.2.4,1.1.3.15,1.1.5.12 ko:K00102,ko:K00104,ko:K03777 ko00620,ko00630,ko01100,ko01110,ko01120,ko01130,map00620,map00630,map01100,map01110,map01120,map01130 - R00197,R00475,R00704,R11591 RC00042,RC00044 ko00000,ko00001,ko01000 - - - FAD-oxidase_C,FAD_binding_4 EH3_k127_5731005_3 1071679.BG57_15505 1.849e-44 175.0 COG5608@1|root,COG5608@2|Bacteria,1N15F@1224|Proteobacteria,2VUHP@28216|Betaproteobacteria,1K8Y1@119060|Burkholderiaceae 28216|Betaproteobacteria S Water Stress and Hypersensitive response - - - - - - - - - - - - LEA_2 EH3_k127_5731005_5 227377.CBU_1071 1.323e-27 119.0 COG2259@1|root,COG2259@2|Bacteria 2|Bacteria S methylamine metabolic process - - - ko:K15977,ko:K18305 - M00644 - - ko00000,ko00002,ko02000 - - - DoxX EH3_k127_5731005_0 420662.Mpe_A0895 2.514e-259 806.0 COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2VMQV@28216|Betaproteobacteria 28216|Betaproteobacteria P Flavin-binding monooxygenase-like - - - ko:K07222 - - - - ko00000 - - - FMO-like,K_oxygenase,Pyr_redox_3 EH3_k127_5731005_4 62928.azo3680 1.252e-28 116.0 2E3JP@1|root,32YI0@2|Bacteria,1N6ZI@1224|Proteobacteria,2VWGY@28216|Betaproteobacteria,2KZ6J@206389|Rhodocyclales 206389|Rhodocyclales S Protein of unknown function (DUF2783) - - - - - - - - - - - - DUF2783 EH3_k127_5731005_1 748247.AZKH_4363 1.286e-156 499.0 COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2VI73@28216|Betaproteobacteria,2KYGN@206389|Rhodocyclales 206389|Rhodocyclales C FAD binding domain - - 1.14.13.127 ko:K05712 ko00360,ko01120,ko01220,map00360,map01120,map01220 M00545 R06786,R06787 RC00236 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_3 EH3_k127_5735014_1 697282.Mettu_0390 5.107e-59 211.0 COG2234@1|root,COG2234@2|Bacteria,1MXZS@1224|Proteobacteria,1S0QR@1236|Gammaproteobacteria,1XFU4@135618|Methylococcales 135618|Methylococcales S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 EH3_k127_5735014_2 690850.Desaf_1137 2.022e-13 75.0 2E9MH@1|root,333U5@2|Bacteria,1NDRZ@1224|Proteobacteria,42VYW@68525|delta/epsilon subdivisions,2WR91@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - EH3_k127_5735014_0 1288494.EBAPG3_24560 2.975e-89 298.0 COG3437@1|root,COG3437@2|Bacteria,1MUB8@1224|Proteobacteria,2VH1F@28216|Betaproteobacteria,372TF@32003|Nitrosomonadales 28216|Betaproteobacteria KT PFAM Metal-dependent phosphohydrolase, HD - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - CHASE2,GAF_2,HD EH3_k127_5738237_3 795666.MW7_2928 1.538e-77 261.0 COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,2VI2V@28216|Betaproteobacteria,1K4KZ@119060|Burkholderiaceae 28216|Betaproteobacteria E Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia trpE - 4.1.3.27 ko:K01657 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Anth_synt_I_N,Chorismate_bind EH3_k127_5738237_1 1038869.AXAN01000019_gene6856 1.015e-131 433.0 COG2008@1|root,COG2008@2|Bacteria,1MWCR@1224|Proteobacteria,2VIVJ@28216|Betaproteobacteria,1K45C@119060|Burkholderiaceae 28216|Betaproteobacteria E PFAM aromatic amino acid beta-eliminating lyase threonine aldolase ltaE - 4.1.2.48 ko:K01620 ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230 - R00751,R06171 RC00312,RC00372 ko00000,ko00001,ko01000 - - - Beta_elim_lyase EH3_k127_5738237_2 1266925.JHVX01000007_gene2387 4.817e-94 312.0 COG0512@1|root,COG0512@2|Bacteria,1MV5Y@1224|Proteobacteria,2VHGQ@28216|Betaproteobacteria,371WE@32003|Nitrosomonadales 28216|Betaproteobacteria EH PFAM Glutamine amidotransferase class-I trpG - 4.1.3.27 ko:K01658 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - GATase EH3_k127_5738237_4 675812.VHA_001682 2.599e-05 55.0 2ADBF@1|root,3130W@2|Bacteria,1PRKB@1224|Proteobacteria,1TJEJ@1236|Gammaproteobacteria,1Y148@135623|Vibrionales 135623|Vibrionales S Pfam:DUF1311 - - - - - - - - - - - - LprI EH3_k127_5738237_0 757424.Hsero_3895 3.319e-138 447.0 COG0547@1|root,COG0547@2|Bacteria,1MUPV@1224|Proteobacteria,2VH7F@28216|Betaproteobacteria,473KA@75682|Oxalobacteraceae 28216|Betaproteobacteria F Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) trpD GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 ko:K00766 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R01073 RC00440 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 EH3_k127_5740203_1 1203554.HMPREF1476_02088 1.47e-267 852.0 COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,2VH5B@28216|Betaproteobacteria,4PQKU@995019|Sutterellaceae 28216|Betaproteobacteria H Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell glnE - 2.7.7.42,2.7.7.89 ko:K00982 - - - - ko00000,ko01000 - - - GlnD_UR_UTase,GlnE EH3_k127_5740203_3 93220.LV28_09340 8.389e-111 364.0 COG0388@1|root,COG0388@2|Bacteria,1MUUB@1224|Proteobacteria,2VIR4@28216|Betaproteobacteria,1K2WY@119060|Burkholderiaceae 28216|Betaproteobacteria S PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase opaA - 3.5.5.1 ko:K01501,ko:K11206 ko00380,ko00460,ko00627,ko00643,ko00910,ko01120,map00380,map00460,map00627,map00643,map00910,map01120 - R00540,R01887,R03093,R03542,R05591,R07855 RC00315,RC00325,RC00617,RC00959,RC02811 ko00000,ko00001,ko01000 - - - CN_hydrolase EH3_k127_5740203_0 1232410.KI421421_gene3797 0.0 1031.0 COG0058@1|root,COG0058@2|Bacteria,1MW4J@1224|Proteobacteria,42MEQ@68525|delta/epsilon subdivisions,2WIPF@28221|Deltaproteobacteria,43T5A@69541|Desulfuromonadales 28221|Deltaproteobacteria G Protein of unknown function (DUF3417) glgP - 2.4.1.1 ko:K00688 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R02111 - ko00000,ko00001,ko01000 - GT35 - DUF3417,Phosphorylase EH3_k127_5740203_2 228410.NE1326 7.265e-208 657.0 COG0312@1|root,COG0312@2|Bacteria,1MUSK@1224|Proteobacteria,2VHJ9@28216|Betaproteobacteria,372FQ@32003|Nitrosomonadales 28216|Betaproteobacteria S modulator of DNA gyrase tldD - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD EH3_k127_5740203_4 469610.HMPREF0189_00250 6.821e-85 289.0 COG0204@1|root,COG0204@2|Bacteria,1RA8V@1224|Proteobacteria,2VQ8G@28216|Betaproteobacteria,1KJA5@119065|unclassified Burkholderiales 28216|Betaproteobacteria I Phosphate acyltransferases - - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase EH3_k127_5740203_5 742823.HMPREF9465_00452 9.163e-49 185.0 COG4589@1|root,COG4589@2|Bacteria,1MX58@1224|Proteobacteria,2VH1P@28216|Betaproteobacteria,4PQVI@995019|Sutterellaceae 28216|Betaproteobacteria S Cytidylyltransferase family - - 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_1 EH3_k127_5749513_5 1144342.PMI40_04611 1.942e-37 143.0 COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2VH2M@28216|Betaproteobacteria,4725V@75682|Oxalobacteraceae 28216|Betaproteobacteria CE Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate - - 1.1.1.85 ko:K00052 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R00994,R04426,R10052 RC00084,RC00417,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh EH3_k127_5749513_3 998674.ATTE01000001_gene3607 8.053e-103 350.0 COG0673@1|root,COG0673@2|Bacteria,1MW74@1224|Proteobacteria,1S94G@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA EH3_k127_5749513_2 384765.SIAM614_29806 5.291e-128 417.0 COG1638@1|root,COG1638@2|Bacteria 2|Bacteria G carbohydrate transport - - - ko:K21395 - - - - ko00000,ko02000 2.A.56.1 - - DctP EH3_k127_5749513_7 574966.KB898648_gene755 5.275e-08 62.0 COG3090@1|root,COG3090@2|Bacteria 2|Bacteria G Trap-type c4-dicarboxylate transport system, small permease component - - - ko:K11689,ko:K21394 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.56.1 - - DctQ EH3_k127_5749513_1 1353528.DT23_16550 1.81e-135 444.0 COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TQW5@28211|Alphaproteobacteria,2XNAT@285107|Thioclava 28211|Alphaproteobacteria G Tripartite ATP-independent periplasmic transporter, DctM component - - - ko:K11690 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.56.1 - - DctM EH3_k127_5749513_0 1380394.JADL01000008_gene3522 7.271e-152 491.0 COG3395@1|root,COG3395@2|Bacteria,1MW4G@1224|Proteobacteria,2TS85@28211|Alphaproteobacteria,2JQNX@204441|Rhodospirillales 204441|Rhodospirillales S Putative sugar-binding N-terminal domain - - 2.7.1.217 ko:K21948 - - R11706,R11707 - ko00000,ko01000 - - - DUF1357_C,DUF1537 EH3_k127_5749513_4 1380394.JADL01000008_gene3523 2.165e-75 263.0 COG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2TSX7@28211|Alphaproteobacteria,2JRUR@204441|Rhodospirillales 204441|Rhodospirillales G Class II Aldolase and Adducin N-terminal domain - - 4.1.1.104 ko:K22130 - - - - ko00000,ko01000 - - - Aldolase_II EH3_k127_5749513_6 1268622.AVS7_01949 3.128e-26 114.0 COG1359@1|root,COG1359@2|Bacteria 2|Bacteria S Antibiotic biosynthesis monooxygenase - - - - - - - - - - - - ABM EH3_k127_5760715_0 1123504.JQKD01000002_gene3831 3.308e-167 529.0 COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2VGZE@28216|Betaproteobacteria,4A9R2@80864|Comamonadaceae 28216|Betaproteobacteria IQ PFAM AMP-dependent synthetase and ligase alkK - 6.2.1.44 ko:K20034 ko00920,map00920 - R10820 RC00004,RC00014 ko00000,ko00001,ko01000 - - - AMP-binding,AMP-binding_C EH3_k127_5760715_1 1031711.RSPO_c01786 1.859e-153 497.0 COG0683@1|root,COG0683@2|Bacteria,1MWH7@1224|Proteobacteria,2VI1S@28216|Betaproteobacteria,1K1YI@119060|Burkholderiaceae 28216|Betaproteobacteria E amino acid - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 EH3_k127_5760715_2 596154.Alide2_3250 2.741e-132 429.0 COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2VJAM@28216|Betaproteobacteria,4AANH@80864|Comamonadaceae 28216|Betaproteobacteria E Belongs to the binding-protein-dependent transport system permease family - - - ko:K01997 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_5760715_3 1217718.ALOU01000019_gene2859 5.622e-08 55.0 COG4177@1|root,COG4177@2|Bacteria,1MY3V@1224|Proteobacteria,2VJIE@28216|Betaproteobacteria,1K0XJ@119060|Burkholderiaceae 28216|Betaproteobacteria P Belongs to the binding-protein-dependent transport system permease family - - - ko:K01995,ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C,BPD_transp_2 EH3_k127_5765113_4 886293.Sinac_3547 2.856e-05 46.0 COG1052@1|root,COG1052@2|Bacteria,2IWTC@203682|Planctomycetes 203682|Planctomycetes CH PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - 1.1.1.26 ko:K00015 ko00630,ko01100,ko01110,ko01120,map00630,map01100,map01110,map01120 - R00717,R01388 RC00031,RC00042 ko00000,ko00001,ko01000 - - - 2-Hacid_dh,2-Hacid_dh_C EH3_k127_5765113_2 1437882.AZRU01000143_gene991 4.44e-16 82.0 2EGJT@1|root,33ABY@2|Bacteria,1NGI4@1224|Proteobacteria,1SH79@1236|Gammaproteobacteria,1YGV8@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria S Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) - - - - - - - - - - - - PHA_gran_rgn EH3_k127_5765113_1 460265.Mnod_3450 5.356e-49 196.0 COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,1JXEP@119045|Methylobacteriaceae 28211|Alphaproteobacteria T PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - - - - - - - - - - Guanylate_cyc,TPR_8 EH3_k127_5765113_0 1095769.CAHF01000025_gene631 9.055e-56 207.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VHEJ@28216|Betaproteobacteria 28216|Betaproteobacteria P Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system - - 3.6.3.30 ko:K02010 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.10 - - ABC_tran,TOBE_2 EH3_k127_5765113_3 864051.BurJ1DRAFT_0909 7.235e-09 59.0 COG3311@1|root,COG3311@2|Bacteria,1QA64@1224|Proteobacteria,2W9W5@28216|Betaproteobacteria,1KP1R@119065|unclassified Burkholderiales 28216|Betaproteobacteria K PFAM Prophage CP4-57 regulatory - - - ko:K07733 - - - - ko00000,ko03000 - - - Phage_AlpA EH3_k127_5771242_1 709032.Sulku_1135 3.641e-05 51.0 COG1073@1|root,COG1073@2|Bacteria,1N1WH@1224|Proteobacteria 1224|Proteobacteria S alpha beta - - - - - - - - - - - - DUF3530 EH3_k127_5771242_0 1123393.KB891316_gene2088 1.008e-205 646.0 COG1519@1|root,COG1519@2|Bacteria,1MU9F@1224|Proteobacteria,2VI67@28216|Betaproteobacteria,1KRI4@119069|Hydrogenophilales 119069|Hydrogenophilales M 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) - - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 ko:K02527 ko00540,ko01100,map00540,map01100 M00060,M00080 R04658,R05074,R09763 RC00009,RC00077,RC00247 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT30 - Glycos_transf_N EH3_k127_5772011_2 640081.Dsui_1451 6.128e-60 217.0 COG1716@1|root,COG1716@2|Bacteria,1MW1M@1224|Proteobacteria,2VJ1K@28216|Betaproteobacteria,2KUV6@206389|Rhodocyclales 206389|Rhodocyclales T (FHA) domain - - - - - - - - - - - - FHA EH3_k127_5772011_3 640081.Dsui_1450 1.538e-55 204.0 COG0631@1|root,COG0631@2|Bacteria,1R7UF@1224|Proteobacteria,2VM6F@28216|Betaproteobacteria,2KUQG@206389|Rhodocyclales 206389|Rhodocyclales T Serine/threonine phosphatases, family 2C, catalytic domain pppL - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C_2 EH3_k127_5772011_1 342113.DM82_174 5.156e-85 288.0 COG0861@1|root,COG0861@2|Bacteria,1MXSK@1224|Proteobacteria,2VHZ5@28216|Betaproteobacteria,1K0IZ@119060|Burkholderiaceae 28216|Betaproteobacteria P Integral membrane protein TerC - - - - - - - - - - - - TerC EH3_k127_5772011_0 1070319.CAGGBEG34_540003 1.419e-160 508.0 COG0074@1|root,COG0074@2|Bacteria,1MUGA@1224|Proteobacteria,2VH1U@28216|Betaproteobacteria,1K2NF@119060|Burkholderiaceae 28216|Betaproteobacteria C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit sucD GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 ko:K01902 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00405,R02404 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000 - - - CoA_binding,Ligase_CoA EH3_k127_5775370_6 517417.Cpar_0167 1.981e-27 118.0 COG2862@1|root,COG2862@2|Bacteria,1FF2W@1090|Chlorobi 1090|Chlorobi S PFAM conserved - - - - - - - - - - - - UPF0114 EH3_k127_5775370_2 381666.H16_A0427 1.04e-121 393.0 COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2VI5U@28216|Betaproteobacteria,1JZWP@119060|Burkholderiaceae 28216|Betaproteobacteria E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA ilvA - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - PALP,Thr_dehydrat_C EH3_k127_5775370_1 1095769.CAHF01000014_gene2945 8.795e-124 405.0 COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2VI5U@28216|Betaproteobacteria,4728C@75682|Oxalobacteraceae 28216|Betaproteobacteria E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA ilvA GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - PALP,Thr_dehydrat_C EH3_k127_5775370_7 1000565.METUNv1_02016 1.149e-09 68.0 2EKNW@1|root,33ECK@2|Bacteria,1NGE2@1224|Proteobacteria,2W51U@28216|Betaproteobacteria 28216|Betaproteobacteria S PEP-CTERM motif - - - - - - - - - - - - VPEP EH3_k127_5775370_3 1384054.N790_03180 3e-77 278.0 COG0154@1|root,COG3391@1|root,COG0154@2|Bacteria,COG3391@2|Bacteria,1MUVQ@1224|Proteobacteria,1RP7E@1236|Gammaproteobacteria,1X4K6@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia gatAX - 3.5.1.4 ko:K01426 ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120 - R02540,R03096,R03180,R03909,R05551,R05590 RC00010,RC00100,RC00950,RC01025 ko00000,ko00001,ko01000 - - - Amidase,Lipocalin_5 EH3_k127_5775370_0 243365.CV_1007 7.341e-145 466.0 COG2334@1|root,COG2334@2|Bacteria,1MU2Q@1224|Proteobacteria,2VI9A@28216|Betaproteobacteria,2KQPE@206351|Neisseriales 206351|Neisseriales F A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response srkA - - - - - - - - - - - APH EH3_k127_5775370_5 420662.Mpe_A0808 1.849e-33 139.0 2BWJV@1|root,32U7J@2|Bacteria,1N47S@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - Frag1 EH3_k127_5775370_4 257310.BB4487 2.167e-39 150.0 COG0247@1|root,COG0277@1|root,COG0247@2|Bacteria,COG0277@2|Bacteria,1MU43@1224|Proteobacteria,2VHYU@28216|Betaproteobacteria,3T2UZ@506|Alcaligenaceae 28216|Betaproteobacteria C FAD linked oxidase, C-terminal domain-containing protein 6 glpCD - - - - - - - - - - - CCG,DUF3400,DUF3683,FAD-oxidase_C,FAD_binding_4,Fer4_8 EH3_k127_5800677_1 395964.KE386496_gene2969 4.599e-136 437.0 COG2759@1|root,COG2759@2|Bacteria,1MUR8@1224|Proteobacteria,2TRMM@28211|Alphaproteobacteria,3NASQ@45404|Beijerinckiaceae 28211|Alphaproteobacteria F formate-tetrahydrofolate ligase activity fhs - 6.3.4.3 ko:K01938 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R00943 RC00026,RC00111 ko00000,ko00001,ko00002,ko01000 - - - FTHFS EH3_k127_5800677_4 1268622.AVS7_03104 2.364e-11 76.0 COG2771@1|root,COG2771@2|Bacteria,1P52Q@1224|Proteobacteria 1224|Proteobacteria K helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE EH3_k127_5800677_0 1095769.CAHF01000013_gene3175 4.707e-168 544.0 COG1167@1|root,COG1167@2|Bacteria,1MV6F@1224|Proteobacteria,2VH8F@28216|Betaproteobacteria,472CF@75682|Oxalobacteraceae 28216|Betaproteobacteria K Transcriptional regulator with HTH domain and aminotransferase domain containing protein - - - - - - - - - - - - Aminotran_1_2,GntR EH3_k127_5800677_3 864051.BurJ1DRAFT_1854 6.815e-27 118.0 COG0454@1|root,COG0456@2|Bacteria 2|Bacteria K acetyltransferase - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_10 EH3_k127_5800677_2 1123504.JQKD01000041_gene2841 2.528e-61 217.0 COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2VJ15@28216|Betaproteobacteria,4ACTX@80864|Comamonadaceae 28216|Betaproteobacteria E beta' subunit - - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - PALP EH3_k127_5812122_3 1000565.METUNv1_02368 8.326e-57 203.0 COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,2VHHG@28216|Betaproteobacteria,2KUIY@206389|Rhodocyclales 206389|Rhodocyclales C Belongs to the glyceraldehyde-3-phosphate dehydrogenase family gapA - 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N EH3_k127_5812122_4 1159870.KB907784_gene2063 1.292e-32 134.0 COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,2VHHG@28216|Betaproteobacteria,3T31E@506|Alcaligenaceae 28216|Betaproteobacteria G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family gap GO:0000166,GO:0000226,GO:0001817,GO:0001819,GO:0001906,GO:0001907,GO:0002376,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004365,GO:0004857,GO:0004866,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006417,GO:0006464,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009435,GO:0009605,GO:0009607,GO:0009620,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009987,GO:0010033,GO:0010466,GO:0010468,GO:0010506,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010951,GO:0012501,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016241,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016769,GO:0016903,GO:0017014,GO:0017144,GO:0017148,GO:0018119,GO:0018130,GO:0018193,GO:0018198,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019730,GO:0019752,GO:0019828,GO:0019904,GO:0030162,GO:0030234,GO:0030414,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031341,GO:0031343,GO:0031640,GO:0031647,GO:0031965,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032787,GO:0032879,GO:0032880,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035605,GO:0035606,GO:0035821,GO:0036094,GO:0036211,GO:0042221,GO:0042802,GO:0042866,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043436,GO:0043891,GO:0043900,GO:0043902,GO:0043903,GO:0044003,GO:0044004,GO:0044068,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044364,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044531,GO:0044532,GO:0044533,GO:0045087,GO:0045861,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050662,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050832,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051287,GO:0051336,GO:0051346,GO:0051402,GO:0051701,GO:0051702,GO:0051704,GO:0051707,GO:0051709,GO:0051712,GO:0051716,GO:0051817,GO:0051818,GO:0051851,GO:0051852,GO:0051873,GO:0051883,GO:0052040,GO:0052042,GO:0052248,GO:0052330,GO:0052433,GO:0052501,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061134,GO:0061135,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0061844,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0070997,GO:0071310,GO:0071345,GO:0071346,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090087,GO:0090407,GO:0097159,GO:0097452,GO:0097718,GO:0098542,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:1990904,GO:2000112,GO:2000113 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N EH3_k127_5812122_2 420662.Mpe_A0261 6.327e-125 423.0 COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2VIXC@28216|Betaproteobacteria,1KJ2I@119065|unclassified Burkholderiales 28216|Betaproteobacteria O Subtilase family - - - ko:K14645 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - Big_3_2,Big_3_3,Peptidase_S8 EH3_k127_5812122_5 713586.KB900536_gene2367 1.402e-16 88.0 COG0705@1|root,COG0705@2|Bacteria,1N8NS@1224|Proteobacteria,1SD4M@1236|Gammaproteobacteria,1X1C5@135613|Chromatiales 135613|Chromatiales S Rhomboid family - - - - - - - - - - - - Rhomboid EH3_k127_5812122_1 402626.Rpic_0491 3.774e-185 591.0 COG0126@1|root,COG0126@2|Bacteria,1MUNU@1224|Proteobacteria,2VHJK@28216|Betaproteobacteria,1K22I@119060|Burkholderiaceae 28216|Betaproteobacteria G Belongs to the phosphoglycerate kinase family pgk GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 ko:K00927 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01512 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGK EH3_k127_5812122_0 1095769.CAHF01000013_gene3316 1.089e-213 675.0 COG0469@1|root,COG0469@2|Bacteria,1MU21@1224|Proteobacteria,2VHN5@28216|Betaproteobacteria,476W3@75682|Oxalobacteraceae 28216|Betaproteobacteria G Pyruvate kinase, barrel domain pykA - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C EH3_k127_5812122_6 257310.BB1408 1.095e-12 67.0 COG0191@1|root,COG0191@2|Bacteria,1MURX@1224|Proteobacteria,2VHGI@28216|Betaproteobacteria,3T1MN@506|Alcaligenaceae 28216|Betaproteobacteria G catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis fba - 4.1.2.13 ko:K01624 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003,M00165,M00167,M00344,M00345 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - F_bP_aldolase EH3_k127_5818355_1 622637.KE124774_gene1697 3.406e-95 319.0 COG3378@1|root,COG3378@2|Bacteria 2|Bacteria KL Phage plasmid primase P4 family - - - ko:K06919 - - - - ko00000 - - - D5_N,P22_AR_N,PriCT_1,Prim-Pol EH3_k127_5818355_0 1242864.D187_008484 2.05e-132 432.0 COG2843@1|root,COG2843@2|Bacteria,1P1MG@1224|Proteobacteria,42MEY@68525|delta/epsilon subdivisions,2WM0F@28221|Deltaproteobacteria 28221|Deltaproteobacteria M Bacterial capsule synthesis protein PGA_cap - - - ko:K07282 - - - - ko00000 - - - PGA_cap EH3_k127_5818355_2 292415.Tbd_2512 1.934e-30 124.0 2DXMV@1|root,345M2@2|Bacteria,1P12I@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - EH3_k127_582382_2 1500894.JQNN01000001_gene1034 3.292e-75 254.0 COG0082@1|root,COG0082@2|Bacteria,1MU98@1224|Proteobacteria,2VJA4@28216|Betaproteobacteria,472QI@75682|Oxalobacteraceae 28216|Betaproteobacteria E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system aroC - 4.2.3.5 ko:K01736 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01714 RC00586 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_synt EH3_k127_582382_1 1095769.CAHF01000011_gene2556 8.029e-85 298.0 COG0477@1|root,COG2814@2|Bacteria,1MVZI@1224|Proteobacteria,2VHWT@28216|Betaproteobacteria,475SR@75682|Oxalobacteraceae 28216|Betaproteobacteria EGP Nucleoside H+ symporter hcaT - - ko:K05820 - - - - ko00000,ko02000 2.A.1.27 - - MFS_1_like EH3_k127_582382_3 497321.C664_14733 7.707e-41 161.0 COG3485@1|root,COG3485@2|Bacteria,1MUYX@1224|Proteobacteria,2VQFX@28216|Betaproteobacteria,2KZ66@206389|Rhodocyclales 206389|Rhodocyclales Q Dioxygenase - - 1.13.11.3 ko:K00449 ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220 - R01631,R03549 RC00388,RC00953 br01602,ko00000,ko00001,ko01000 - - - Dioxygenase_C EH3_k127_582382_0 1123504.JQKD01000022_gene131 7.085e-129 415.0 COG0065@1|root,COG0065@2|Bacteria,1MVYR@1224|Proteobacteria,2VHSH@28216|Betaproteobacteria,4AAWB@80864|Comamonadaceae 28216|Betaproteobacteria E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuC - 4.2.1.33,4.2.1.35 ko:K01703 ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase EH3_k127_5824848_4 983917.RGE_38130 1.439e-41 161.0 COG1228@1|root,COG1228@2|Bacteria,1MUYR@1224|Proteobacteria,2VK8A@28216|Betaproteobacteria,1KN18@119065|unclassified Burkholderiales 28216|Betaproteobacteria F Amidohydrolase family hutI - 3.5.2.7 ko:K01468 ko00340,ko01100,map00340,map01100 M00045 R02288 RC00683 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1,Amidohydro_3 EH3_k127_5824848_3 426114.THI_0808 3.466e-43 168.0 COG3758@1|root,COG3758@2|Bacteria,1PSQ3@1224|Proteobacteria,2VVTZ@28216|Betaproteobacteria,1KMSD@119065|unclassified Burkholderiales 28216|Betaproteobacteria S HutD - - - ko:K09975 - - - - ko00000 - - - HutD EH3_k127_5824848_2 983917.RGE_38110 1.989e-97 323.0 COG2188@1|root,COG2188@2|Bacteria,1MVFM@1224|Proteobacteria,2VK47@28216|Betaproteobacteria,1KN7T@119065|unclassified Burkholderiales 28216|Betaproteobacteria K UTRA hutC - - ko:K05836 - - - - ko00000,ko03000 - - - GntR,UTRA EH3_k127_5824848_0 426114.THI_0805 1.122e-319 985.0 COG2987@1|root,COG2987@2|Bacteria,1MU4W@1224|Proteobacteria,2VK3E@28216|Betaproteobacteria,1KMZR@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate hutU - 4.2.1.49 ko:K01712 ko00340,ko01100,map00340,map01100 M00045 R02914 RC00804 ko00000,ko00001,ko00002,ko01000 - - - Urocanase,Urocanase_C,Urocanase_N EH3_k127_5824848_1 426114.THI_0804 1.114e-209 693.0 COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,2VJB1@28216|Betaproteobacteria,1KMXV@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Aromatic amino acid lyase hutH - 4.3.1.3 ko:K01745 ko00340,ko01100,map00340,map01100 M00045 R01168 RC00361 ko00000,ko00001,ko00002,ko01000 - - - Lyase_aromatic EH3_k127_5824848_6 1472716.KBK24_0130330 6.073e-10 68.0 COG2703@1|root,COG2703@2|Bacteria,1MZJ3@1224|Proteobacteria,2VUV8@28216|Betaproteobacteria,1K97T@119060|Burkholderiaceae 28216|Betaproteobacteria P Hemerythrin HHE cation binding domain - - - ko:K07216 - - - - ko00000 - - - Hemerythrin EH3_k127_5824848_5 522306.CAP2UW1_3192 4.836e-17 85.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VHEI@28216|Betaproteobacteria,1KQHG@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria IQ AMP-binding enzyme C-terminal domain - - - - - - - - - - - - AMP-binding,AMP-binding_C EH3_k127_5852914_1 756272.Plabr_1440 4.872e-71 248.0 COG0569@1|root,COG0569@2|Bacteria 2|Bacteria P domain protein - - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Ion_trans,Ion_trans_2,TrkA_C EH3_k127_5852914_2 13690.CP98_00954 2.736e-55 202.0 COG0693@1|root,COG0693@2|Bacteria,1MVTT@1224|Proteobacteria,2TT0C@28211|Alphaproteobacteria,2K2TJ@204457|Sphingomonadales 204457|Sphingomonadales S DJ-1/PfpI family - - - - - - - - - - - - DJ-1_PfpI EH3_k127_5852914_0 290397.Adeh_2260 8.492e-122 398.0 COG1143@1|root,COG1143@2|Bacteria,1QYG4@1224|Proteobacteria,43E88@68525|delta/epsilon subdivisions,2X7N9@28221|Deltaproteobacteria 28221|Deltaproteobacteria C 4Fe-4S dicluster domain - - - - - - - - - - - - - EH3_k127_5858653_0 29581.BW37_02840 5.951e-111 366.0 COG2962@1|root,COG2962@2|Bacteria,1MX5G@1224|Proteobacteria,2VJ5U@28216|Betaproteobacteria,4737C@75682|Oxalobacteraceae 28216|Betaproteobacteria S EamA-like transporter family rarD - - ko:K05786 - - - - ko00000,ko02000 2.A.7.7 - - EamA EH3_k127_5858653_1 159087.Daro_0536 6.1e-43 175.0 COG1186@1|root,COG1186@2|Bacteria,1RH75@1224|Proteobacteria,2VSE7@28216|Betaproteobacteria,2KWTZ@206389|Rhodocyclales 206389|Rhodocyclales J chain release factor - - - ko:K15034 - - - - ko00000,ko03012 - - - RF-1 EH3_k127_5858653_2 279714.FuraDRAFT_2300 5.561e-32 127.0 COG1284@1|root,COG1284@2|Bacteria,1RDIV@1224|Proteobacteria,2VQSX@28216|Betaproteobacteria,2KT1E@206351|Neisseriales 206351|Neisseriales S Uncharacterised 5xTM membrane BCR, YitT family COG1284 - - - - - - - - - - - - YitT_membrane EH3_k127_5875386_3 1500894.JQNN01000001_gene4361 2.201e-33 130.0 COG2805@1|root,COG2805@2|Bacteria,1MU3J@1224|Proteobacteria,2VHHW@28216|Betaproteobacteria,473M7@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Pilus retraction pilT - - ko:K02669,ko:K12203 - - - - ko00000,ko02035,ko02044 3.A.15.2,3.A.7.10.1,3.A.7.9.1 - - T2SSE EH3_k127_5875386_2 204773.HEAR0290 7.167e-80 273.0 COG0325@1|root,COG0325@2|Bacteria,1MWN7@1224|Proteobacteria,2VHNY@28216|Betaproteobacteria,472ST@75682|Oxalobacteraceae 28216|Betaproteobacteria S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis - - - ko:K06997 - - - - ko00000 - - - Ala_racemase_N EH3_k127_5875386_1 269482.Bcep1808_0691 3.011e-83 290.0 COG0345@1|root,COG0345@2|Bacteria,1R5J1@1224|Proteobacteria,2VJD1@28216|Betaproteobacteria,1JZPH@119060|Burkholderiaceae 28216|Betaproteobacteria E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline proC - 1.5.1.2 ko:K00286 ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230 M00015 R01248,R01251,R03291,R03293 RC00054,RC00083 ko00000,ko00001,ko00002,ko01000 - - - F420_oxidored,P5CR_dimer EH3_k127_5875386_0 264198.Reut_A2803 3.227e-102 341.0 COG0382@1|root,COG0382@2|Bacteria,1MV4Q@1224|Proteobacteria,2VHEU@28216|Betaproteobacteria,1K3QR@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate ubiA - 2.5.1.39 ko:K03179 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R05000,R05615 RC00209,RC02895 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA EH3_k127_5875386_4 983917.RGE_10630 1.404e-13 72.0 COG1653@1|root,COG1653@2|Bacteria,1MVMW@1224|Proteobacteria,2VH0F@28216|Betaproteobacteria,1KNDE@119065|unclassified Burkholderiales 28216|Betaproteobacteria G ABC-type sugar transport system, periplasmic component ugpB - - ko:K05813 ko02010,map02010 M00198 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.3 - - SBP_bac_8 EH3_k127_5879745_2 1158762.KB898037_gene2140 1.353e-19 91.0 COG0433@1|root,COG0433@2|Bacteria,1QUPX@1224|Proteobacteria,1T20D@1236|Gammaproteobacteria,1WW0J@135613|Chromatiales 135613|Chromatiales S TIGRFAM conjugative coupling factor TraD, SXT TOL subfamily - - - ko:K12071 - - - - ko00000,ko02044 3.A.7.11.1 - - TraG-D_C,TrwB_AAD_bind EH3_k127_5879745_4 1123392.AQWL01000025_gene2150 4.596e-08 63.0 28HMN@1|root,3334U@2|Bacteria,1NE8V@1224|Proteobacteria,2VWZK@28216|Betaproteobacteria 28216|Betaproteobacteria S Domain of unknown function (DUF4400) - - - - - - - - - - - - DUF4400 EH3_k127_5879745_5 305700.B447_10997 1.15e-06 63.0 COG2982@1|root,COG2982@2|Bacteria,1MUAN@1224|Proteobacteria,2VJ6I@28216|Betaproteobacteria,2KXKT@206389|Rhodocyclales 206389|Rhodocyclales M AsmA family - - - ko:K07289,ko:K07290 - - - - ko00000 9.B.121 - - AsmA EH3_k127_5879745_3 237609.PSAKL28_47620 2.522e-11 78.0 COG2982@1|root,COG2982@2|Bacteria,1MUAN@1224|Proteobacteria,1RNZM@1236|Gammaproteobacteria 1236|Gammaproteobacteria M protein involved in outer membrane biogenesis yhjG GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0032386,GO:0032879,GO:0032880,GO:0033157,GO:0044464,GO:0050789,GO:0051049,GO:0051223,GO:0060341,GO:0065007,GO:0070201,GO:0071944,GO:0090087,GO:0090313,GO:1903533,GO:1903827,GO:1905475 - ko:K07290 - - - - ko00000 9.B.121 - - AsmA EH3_k127_5879745_0 977880.RALTA_A1227 9e-251 789.0 COG0204@1|root,COG0204@2|Bacteria,1MWDY@1224|Proteobacteria,2VJ4I@28216|Betaproteobacteria,1K1BW@119060|Burkholderiaceae 28216|Betaproteobacteria I Glycerol acyltransferase aas - 2.3.1.40,6.2.1.20 ko:K05939 ko00071,ko00564,map00071,map00564 - R01406,R04864 RC00014,RC00039,RC00041 ko00000,ko00001,ko01000 - - - Acyltransferase,MFS_1 EH3_k127_5879745_1 1300345.LF41_902 1.042e-49 187.0 COG2067@1|root,COG2067@2|Bacteria,1RJIQ@1224|Proteobacteria,1SAC1@1236|Gammaproteobacteria 1236|Gammaproteobacteria I long-chain fatty acid transport protein - - - - - - - - - - - - - EH3_k127_5889802_7 1504672.669784961 1.755e-20 102.0 COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2VHJP@28216|Betaproteobacteria,4AA1X@80864|Comamonadaceae 28216|Betaproteobacteria G PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - - - - - - - - - - DctM EH3_k127_5889802_6 296591.Bpro_3965 3.92e-61 221.0 COG3090@1|root,COG3090@2|Bacteria,1R7TV@1224|Proteobacteria,2VPJP@28216|Betaproteobacteria,4ADJ5@80864|Comamonadaceae 28216|Betaproteobacteria G PFAM Tripartite ATP-independent periplasmic transporter, DctQ component - - - - - - - - - - - - DctQ EH3_k127_5889802_5 296591.Bpro_3963 3.037e-63 225.0 COG2186@1|root,COG2186@2|Bacteria,1MY1K@1224|Proteobacteria,2VP3Y@28216|Betaproteobacteria,4ADV9@80864|Comamonadaceae 28216|Betaproteobacteria K Regulatory protein GntR HTH - - - - - - - - - - - - FCD,GntR EH3_k127_5889802_3 1096546.WYO_2189 6.296e-84 286.0 COG1028@1|root,COG1028@2|Bacteria,1MURZ@1224|Proteobacteria,2TQJ6@28211|Alphaproteobacteria,1JS8E@119045|Methylobacteriaceae 28211|Alphaproteobacteria IQ Enoyl-(Acyl carrier protein) reductase MA20_27190 - 1.1.1.30 ko:K00019,ko:K18335 ko00051,ko00072,ko00650,ko01100,ko01120,map00051,map00072,map00650,map01100,map01120 M00088 R01361,R10690 RC00089,RC00117 ko00000,ko00001,ko00002,ko01000 - - - adh_short_C2 EH3_k127_5889802_1 365046.Rta_09050 1.375e-137 442.0 COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2VI5Z@28216|Betaproteobacteria,4AA1T@80864|Comamonadaceae 28216|Betaproteobacteria Q PFAM fumarylacetoacetate (FAA) hydrolase - - - - - - - - - - - - FAA_hydrolase EH3_k127_5889802_4 365046.Rta_11260 1.167e-78 271.0 COG1028@1|root,COG1028@2|Bacteria,1MXQR@1224|Proteobacteria,2VIQY@28216|Betaproteobacteria,4AJ1W@80864|Comamonadaceae 28216|Betaproteobacteria IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 EH3_k127_5889802_0 395495.Lcho_0286 1.088e-141 461.0 COG3181@1|root,COG3181@2|Bacteria,1N00G@1224|Proteobacteria,2VN46@28216|Betaproteobacteria,1KJ3Y@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Tripartite tricarboxylate transporter family receptor - - - - - - - - - - - - TctC EH3_k127_5889802_2 296591.Bpro_1260 1.28e-95 314.0 COG0395@1|root,COG0395@2|Bacteria,1N4I0@1224|Proteobacteria,2VNEK@28216|Betaproteobacteria,4AEIK@80864|Comamonadaceae 28216|Betaproteobacteria P PFAM binding-protein-dependent transport systems inner membrane component - - - ko:K02026 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - BPD_transp_1 EH3_k127_58995_1 85643.Tmz1t_3541 1.081e-118 387.0 COG0213@1|root,COG0213@2|Bacteria,1MV3H@1224|Proteobacteria,2VHXI@28216|Betaproteobacteria 28216|Betaproteobacteria F The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis - - 2.4.2.4 ko:K00758 ko00240,ko00983,ko01100,ko05219,map00240,map00983,map01100,map05219 - R01570,R02484,R08222,R08230 RC00063 ko00000,ko00001,ko01000 - - - Glycos_trans_3N,Glycos_transf_3,PYNP_C EH3_k127_58995_2 1348657.M622_07100 1.495e-94 331.0 COG0462@1|root,COG0462@2|Bacteria,1MUV7@1224|Proteobacteria,2VJI6@28216|Betaproteobacteria 28216|Betaproteobacteria F Belongs to the ribose-phosphate pyrophosphokinase family - - 2.7.6.1 ko:K00948 ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230 M00005 R01049 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - Pribosyltran,Pribosyltran_N EH3_k127_58995_3 1123256.KB907927_gene1778 3.996e-33 132.0 COG5531@1|root,COG5531@2|Bacteria,1N3MD@1224|Proteobacteria,1SPRS@1236|Gammaproteobacteria,1XAQU@135614|Xanthomonadales 135614|Xanthomonadales B SWI complex, BAF60b domains - - - - - - - - - - - - SWIB EH3_k127_58995_0 420662.Mpe_A1517 0.0 1054.0 COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,2VI8X@28216|Betaproteobacteria,1KJC3@119065|unclassified Burkholderiales 28216|Betaproteobacteria L helicase superfamily c-terminal domain lhr - - ko:K03724 - - - - ko00000,ko01000,ko03400 - - - DEAD,DEAD_assoc,Helicase_C EH3_k127_58995_4 748247.AZKH_4235 2.579e-29 120.0 2END2@1|root,33G0J@2|Bacteria,1NIFI@1224|Proteobacteria,2VVU7@28216|Betaproteobacteria,2KZCF@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - EH3_k127_58995_5 1031711.RSPO_c02924 1.699e-16 81.0 COG1502@1|root,COG1502@2|Bacteria,1MWUW@1224|Proteobacteria,2VI41@28216|Betaproteobacteria,1K1ZM@119060|Burkholderiaceae 28216|Betaproteobacteria I Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol clsB - - ko:K06131 ko00564,ko01100,map00564,map01100 - R07390 RC00017 ko00000,ko00001,ko01000 - - - PLDc_2 EH3_k127_5947476_0 497321.C664_13167 1.264e-309 957.0 COG2609@1|root,COG2609@2|Bacteria,1MV21@1224|Proteobacteria,2VIAH@28216|Betaproteobacteria,2KU6Z@206389|Rhodocyclales 28216|Betaproteobacteria C Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) aceE - 1.2.4.1 ko:K00163 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200 M00307 R00014,R00209,R01699,R03270 RC00004,RC00027,RC00627,RC02742,RC02744,RC02882 br01601,ko00000,ko00001,ko00002,ko01000 - - - Transketolase_N EH3_k127_5949860_2 857087.Metme_3082 1.714e-24 104.0 COG1433@1|root,COG1433@2|Bacteria,1RD9P@1224|Proteobacteria,1S50W@1236|Gammaproteobacteria,1XFPR@135618|Methylococcales 135618|Methylococcales S Dinitrogenase iron-molybdenum cofactor - - - ko:K02596 - - - - ko00000 - - - Nitro_FeMo-Co EH3_k127_5949860_3 187272.Mlg_1342 2.157e-19 97.0 COG3086@1|root,COG3086@2|Bacteria,1N6QS@1224|Proteobacteria,1SCTM@1236|Gammaproteobacteria,1WYRU@135613|Chromatiales 135613|Chromatiales T PFAM Positive regulator of sigma(E), RseC MucC - - - ko:K03803 - - - - ko00000,ko03021 - - - RseC_MucC EH3_k127_5949860_0 580332.Slit_0907 1.858e-76 258.0 2DBX8@1|root,2ZBN7@2|Bacteria,1RABM@1224|Proteobacteria,2VQYS@28216|Betaproteobacteria,44WBZ@713636|Nitrosomonadales 28216|Betaproteobacteria S Protein of unknown function, DUF269 - - - - - - - - - - - - DUF269 EH3_k127_5949860_4 1249627.D779_2021 8.68e-18 86.0 COG5420@1|root,COG5420@2|Bacteria,1N98S@1224|Proteobacteria,1SCVR@1236|Gammaproteobacteria,1WZIJ@135613|Chromatiales 135613|Chromatiales S Rop-like - - - - - - - - - - - - Rop-like EH3_k127_5949860_1 870187.Thini_4023 1.153e-35 141.0 COG1143@1|root,COG1143@2|Bacteria,1N1SG@1224|Proteobacteria,1SA3T@1236|Gammaproteobacteria 1236|Gammaproteobacteria C TIGRFAM ferredoxin III - - - - - - - - - - - - Fer4,Fer4_21,Fer4_9 EH3_k127_5962358_1 1144275.COCOR_01020 2.641e-06 51.0 COG1008@1|root,COG1008@2|Bacteria,1MV7V@1224|Proteobacteria,42NGD@68525|delta/epsilon subdivisions,2WJDC@28221|Deltaproteobacteria,2YTXZ@29|Myxococcales 28221|Deltaproteobacteria C Proton-conducting membrane transporter nuoM - 1.6.5.3 ko:K00342 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q5_N,Proton_antipo_M EH3_k127_5962358_0 379066.GAU_2392 3.975e-229 718.0 COG1009@1|root,COG1009@2|Bacteria,1ZUA7@142182|Gemmatimonadetes 142182|Gemmatimonadetes CP NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus - - 1.6.5.3 ko:K00341 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M,Proton_antipo_N EH3_k127_5972168_0 1095769.CAHF01000001_gene3493 3.358e-84 287.0 COG1346@1|root,COG1346@2|Bacteria,1MV81@1224|Proteobacteria,2VH4N@28216|Betaproteobacteria,474IY@75682|Oxalobacteraceae 28216|Betaproteobacteria M effector of murein hydrolase lrgB - - - - - - - - - - - LrgB EH3_k127_5972168_1 1123504.JQKD01000039_gene1123 3.702e-23 113.0 COG3618@1|root,COG3618@2|Bacteria,1QWWJ@1224|Proteobacteria,2VMAE@28216|Betaproteobacteria 2|Bacteria S amidohydrolase - - 5.4.3.8 ko:K01845 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02272 RC00677 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Amidohydro_2,Aminotran_3 EH3_k127_6039053_0 1003200.AXXA_14558 5.883e-236 740.0 COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2VH8Z@28216|Betaproteobacteria,3T6JT@506|Alcaligenaceae 28216|Betaproteobacteria E Gamma-glutamyltranspeptidase - - 2.3.2.2,3.4.19.13 ko:K00681 ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100 - R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935 RC00064,RC00090,RC00096 ko00000,ko00001,ko01000,ko01002 - - - G_glu_transpept EH3_k127_6039053_1 1379270.AUXF01000001_gene2209 2.026e-61 216.0 COG0332@1|root,COG0332@2|Bacteria,1ZU9P@142182|Gemmatimonadetes 142182|Gemmatimonadetes I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids - - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C EH3_k127_6064848_0 448385.sce4763 4.906e-76 268.0 COG1297@1|root,COG1297@2|Bacteria,1N7SK@1224|Proteobacteria,42PMM@68525|delta/epsilon subdivisions,2X37C@28221|Deltaproteobacteria,2YUQZ@29|Myxococcales 28221|Deltaproteobacteria S OPT oligopeptide transporter protein - - - - - - - - - - - - OPT EH3_k127_6064848_2 1244869.H261_21688 1.116e-71 255.0 COG0454@1|root,COG0456@2|Bacteria,1RGZ2@1224|Proteobacteria 1224|Proteobacteria K Acetyltransferase (GNAT) family - - - - - - - - - - - - Acetyltransf_1 EH3_k127_6064848_1 1057002.KB905370_gene1700 7.921e-73 250.0 COG4857@1|root,COG4857@2|Bacteria,1MXBW@1224|Proteobacteria,2TR0Z@28211|Alphaproteobacteria,4BD98@82115|Rhizobiaceae 28211|Alphaproteobacteria S Phosphotransferase enzyme family - - - - - - - - - - - - APH EH3_k127_6069366_0 391038.Bphy_7430 2.381e-175 563.0 COG2801@1|root,COG2801@2|Bacteria,1MXKK@1224|Proteobacteria,2VJQH@28216|Betaproteobacteria,1K4UF@119060|Burkholderiaceae 28216|Betaproteobacteria L Integrase, catalytic region - - - - - - - - - - - - rve EH3_k127_6108569_0 243233.MCA1632 3.72e-62 238.0 COG1196@1|root,COG3264@1|root,COG1196@2|Bacteria,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,1RMYY@1236|Gammaproteobacteria,1XE6E@135618|Methylococcales 135618|Methylococcales M Mechanosensitive ion channel - - - - - - - - - - - - MS_channel EH3_k127_6108569_2 420662.Mpe_A3091 9.793e-14 76.0 COG4520@1|root,COG4520@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - 17kDa_Anti_2,SH3_3 EH3_k127_6108569_1 29581.BW37_05111 5.213e-14 76.0 COG3134@1|root,COG3134@2|Bacteria,1N0SK@1224|Proteobacteria,2WIIM@28216|Betaproteobacteria,474FG@75682|Oxalobacteraceae 28216|Betaproteobacteria S Glycine zipper 2TM domain - - - - - - - - - - - - Rick_17kDa_Anti EH3_k127_6129252_2 1485544.JQKP01000018_gene577 1.265e-89 304.0 COG1199@1|root,COG1199@2|Bacteria,1MVCU@1224|Proteobacteria,2VH0V@28216|Betaproteobacteria,44VAI@713636|Nitrosomonadales 28216|Betaproteobacteria L HELICc2 dinG - 3.6.4.12 ko:K03722 - - - - ko00000,ko01000,ko03400 - - - DEAD,DEAD_2,Helicase_C_2,ResIII EH3_k127_6129252_5 1095769.CAHF01000011_gene2412 7.934e-14 83.0 COG5481@1|root,COG5481@2|Bacteria,1R3J0@1224|Proteobacteria,2WIIA@28216|Betaproteobacteria,47855@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF465) - - - - - - - - - - - - DUF465 EH3_k127_6129252_3 1095769.CAHF01000011_gene2413 5.7e-67 237.0 COG0631@1|root,COG0631@2|Bacteria,1N72S@1224|Proteobacteria,2VK9S@28216|Betaproteobacteria,473DQ@75682|Oxalobacteraceae 28216|Betaproteobacteria T Serine/threonine phosphatases, family 2C, catalytic domain - - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C_2 EH3_k127_6129252_1 257310.BB3666 1.627e-157 505.0 COG1485@1|root,COG1485@2|Bacteria,1MUUW@1224|Proteobacteria,2VHQX@28216|Betaproteobacteria,3T27Y@506|Alcaligenaceae 28216|Betaproteobacteria S AFG1-like ATPase yhcM - - ko:K06916 - - - - ko00000,ko03036 - - - AFG1_ATPase EH3_k127_6129252_0 1247649.D560_2415 3.41e-217 682.0 COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2VI6G@28216|Betaproteobacteria,3T2NE@506|Alcaligenaceae 28216|Betaproteobacteria C E3 component of 2-oxoglutarate dehydrogenase complex odhL GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pyr_redox_2,Pyr_redox_dim EH3_k127_6129252_4 1071679.BG57_04475 4.859e-47 169.0 COG0508@1|root,COG0508@2|Bacteria,1MUJD@1224|Proteobacteria,2VIEM@28216|Betaproteobacteria,1K1V0@119060|Burkholderiaceae 28216|Betaproteobacteria C The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) sucB - 2.3.1.61 ko:K00658 ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R02570,R02571,R08549 RC00004,RC02727,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding EH3_k127_61541_4 243365.CV_4245 8.628e-72 247.0 COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2VHAX@28216|Betaproteobacteria,2KPDB@206351|Neisseriales 206351|Neisseriales P Rhodanese Homology Domain - - 2.8.1.1,2.8.1.2 ko:K01011 ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122 - R01931,R03105,R03106 RC00214 ko00000,ko00001,ko01000 - - - Rhodanese EH3_k127_61541_3 977880.RALTA_A2241 1.513e-81 280.0 COG0428@1|root,COG0428@2|Bacteria,1R40E@1224|Proteobacteria,2VN69@28216|Betaproteobacteria,1K5J9@119060|Burkholderiaceae 28216|Betaproteobacteria P Divalent heavy-metal cations transporter - - - ko:K16267 - - - - ko00000,ko02000 2.A.5.4.11 - - Zip EH3_k127_61541_1 420662.Mpe_A3005 3.985e-109 361.0 COG0412@1|root,COG0412@2|Bacteria,1MW7S@1224|Proteobacteria,2VH0T@28216|Betaproteobacteria,1KJNT@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q dienelactone hydrolase clcD - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH EH3_k127_61541_5 864073.HFRIS_000360 6.15e-60 216.0 COG1335@1|root,COG1335@2|Bacteria,1REG4@1224|Proteobacteria 1224|Proteobacteria Q PFAM Isochorismatase - - - - - - - - - - - - Isochorismatase EH3_k127_61541_0 1095769.CAHF01000006_gene1954 1.537e-188 600.0 COG0312@1|root,COG0312@2|Bacteria,1NSH6@1224|Proteobacteria,2VJRT@28216|Betaproteobacteria,475XU@75682|Oxalobacteraceae 28216|Betaproteobacteria S Putative modulator of DNA gyrase - - - - - - - - - - - - PmbA_TldD EH3_k127_61541_2 1095769.CAHF01000006_gene1955 1.471e-93 318.0 COG0312@1|root,COG0312@2|Bacteria,1QM7I@1224|Proteobacteria,2VNXI@28216|Betaproteobacteria 28216|Betaproteobacteria S Putative modulator of DNA gyrase - - - - - - - - - - - - PmbA_TldD EH3_k127_6158466_1 1198452.Jab_2c28530 3.69e-33 128.0 COG0540@1|root,COG0540@2|Bacteria,1MWAB@1224|Proteobacteria,2VHG9@28216|Betaproteobacteria,472W3@75682|Oxalobacteraceae 28216|Betaproteobacteria F Belongs to the ATCase OTCase family pyrB - 2.1.3.2 ko:K00609 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R01397 RC00064,RC02850 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N EH3_k127_6158466_0 216591.BCAL3138 2.314e-154 502.0 COG0044@1|root,COG0044@2|Bacteria,1MVXY@1224|Proteobacteria,2VH1E@28216|Betaproteobacteria,1K38Y@119060|Burkholderiaceae 28216|Betaproteobacteria F dihydroorotase multifunctional complex type pyrX - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1,Amidohydro_3 EH3_k127_6168934_9 94624.Bpet2528 5.594e-11 63.0 COG0750@1|root,COG0750@2|Bacteria,1MU91@1224|Proteobacteria,2VHBW@28216|Betaproteobacteria,3T24I@506|Alcaligenaceae 28216|Betaproteobacteria M Zinc metalloprotease rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 EH3_k127_6168934_0 1095769.CAHF01000011_gene2231 2.288e-282 887.0 COG4775@1|root,COG4775@2|Bacteria,1MU0D@1224|Proteobacteria,2VHTX@28216|Betaproteobacteria,472UR@75682|Oxalobacteraceae 28216|Betaproteobacteria M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamA - - ko:K07277 - - - - ko00000,ko02000,ko03029 1.B.33 - - Bac_surface_Ag,POTRA EH3_k127_6168934_6 1265502.KB905935_gene3039 9.908e-56 201.0 COG2825@1|root,COG2825@2|Bacteria,1RD8X@1224|Proteobacteria,2VRZI@28216|Betaproteobacteria,4AE7E@80864|Comamonadaceae 28216|Betaproteobacteria M Belongs to the skp family ompH - - ko:K06142 - - - - ko00000 - - - OmpH EH3_k127_6168934_3 29581.BW37_02541 1.222e-97 331.0 COG1044@1|root,COG1044@2|Bacteria,1MUX6@1224|Proteobacteria,2VHJR@28216|Betaproteobacteria,473BV@75682|Oxalobacteraceae 28216|Betaproteobacteria M Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxD - 2.3.1.191 ko:K02536 ko00540,ko01100,map00540,map01100 M00060 R04550 RC00039,RC00166 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hexapep,Hexapep_2,LpxD EH3_k127_6168934_5 640081.Dsui_2683 1.025e-60 214.0 COG0764@1|root,COG0764@2|Bacteria,1RH2T@1224|Proteobacteria,2VRKQ@28216|Betaproteobacteria,2KWAJ@206389|Rhodocyclales 206389|Rhodocyclales I Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs fabZ - 4.2.1.59 ko:K02372 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121 RC00831,RC01095 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FabA EH3_k127_6168934_2 1265502.KB905935_gene3036 1.239e-107 354.0 COG1043@1|root,COG1043@2|Bacteria,1MUHQ@1224|Proteobacteria,2VHDG@28216|Betaproteobacteria,4AB4E@80864|Comamonadaceae 28216|Betaproteobacteria M Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxA - 2.3.1.129 ko:K00677 ko00540,ko01100,ko01503,map00540,map01100,map01503 M00060 R04567 RC00039,RC00055 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Acetyltransf_11,Hexapep EH3_k127_6168934_1 795666.MW7_1911 2.325e-111 373.0 COG0763@1|root,COG0763@2|Bacteria,1MVBI@1224|Proteobacteria,2VIBP@28216|Betaproteobacteria,1K18S@119060|Burkholderiaceae 28216|Betaproteobacteria M Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxB - 2.4.1.182 ko:K00748 ko00540,ko01100,map00540,map01100 M00060 R04606 RC00005,RC00059 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT19 - LpxB EH3_k127_6168934_4 713586.KB900536_gene125 3.782e-66 232.0 COG0164@1|root,COG0164@2|Bacteria,1RA65@1224|Proteobacteria,1RQ4B@1236|Gammaproteobacteria,1WYG2@135613|Chromatiales 135613|Chromatiales L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids rnhB - 3.1.26.4 ko:K03470 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - RNase_HII EH3_k127_6168934_7 1203554.HMPREF1476_00608 1.278e-54 208.0 COG0566@1|root,COG0566@2|Bacteria,1R9JA@1224|Proteobacteria,2VQDG@28216|Betaproteobacteria,4PQRU@995019|Sutterellaceae 28216|Betaproteobacteria H SpoU rRNA Methylase family spoU - - ko:K03437 - - - - ko00000,ko03016 - - - SpoU_methylase EH3_k127_6168934_8 264730.PSPPH_5162 4.174e-12 72.0 COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,1S1KY@1236|Gammaproteobacteria,1Z535@136849|Pseudomonas syringae group 1236|Gammaproteobacteria M Mycolic acid cyclopropane synthetase cfa2 - 2.1.1.79 ko:K00574 - - - - ko00000,ko01000 - - - CMAS EH3_k127_6173870_2 365046.Rta_31080 1.677e-25 106.0 COG1793@1|root,COG1793@2|Bacteria,1MV3S@1224|Proteobacteria,2VJ3Q@28216|Betaproteobacteria,4AB7V@80864|Comamonadaceae 28216|Betaproteobacteria L ATP dependent DNA ligase domain protein lig - 6.5.1.1,6.5.1.6,6.5.1.7 ko:K10747 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00381,R00382,R10822,R10823 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N EH3_k127_6173870_3 1268237.G114_18986 4.613e-23 107.0 2E6HR@1|root,33150@2|Bacteria 2|Bacteria S YCII-related domain - - - - - - - - - - - - YCII EH3_k127_6173870_4 864051.BurJ1DRAFT_1901 0.0003288 48.0 COG3791@1|root,COG3791@2|Bacteria,1N6S5@1224|Proteobacteria,2VWNN@28216|Betaproteobacteria 28216|Betaproteobacteria S PFAM glutathione-dependent formaldehyde-activating - - - - - - - - - - - - GFA EH3_k127_6173870_0 266117.Rxyl_2946 1.049e-111 395.0 COG2197@1|root,COG3903@1|root,COG2197@2|Bacteria,COG3903@2|Bacteria,2GIZ1@201174|Actinobacteria,4CPZ0@84995|Rubrobacteria 84995|Rubrobacteria T Transcriptional regulator - - - - - - - - - - - - BTAD,Trans_reg_C EH3_k127_6173870_1 1157708.KB907450_gene6513 4.715e-29 117.0 COG4091@1|root,COG4091@2|Bacteria,1MUZX@1224|Proteobacteria,2VI2Z@28216|Betaproteobacteria,4AAKE@80864|Comamonadaceae 28216|Betaproteobacteria E Oxidoreductase domain protein - - - - - - - - - - - - GFO_IDH_MocA,NAD_binding_3,SAF EH3_k127_6298297_1 1120956.JHZK01000019_gene2505 2.265e-125 410.0 COG0702@1|root,COG0702@2|Bacteria,1PT91@1224|Proteobacteria,2U4IU@28211|Alphaproteobacteria 28211|Alphaproteobacteria GM Protein of unknown function (DUF2867) - - - - - - - - - - - - DUF2867,NAD_binding_10 EH3_k127_6298297_0 1163617.SCD_n00015 7.512e-230 728.0 COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,2VH9I@28216|Betaproteobacteria 28216|Betaproteobacteria P Transport of potassium into the cell kup - - ko:K03549 - - - - ko00000,ko02000 2.A.72 - - K_trans EH3_k127_6298297_2 1288494.EBAPG3_17700 3.29e-76 259.0 COG2119@1|root,COG2119@2|Bacteria,1RDDV@1224|Proteobacteria,2VQ6X@28216|Betaproteobacteria,37370@32003|Nitrosomonadales 28216|Betaproteobacteria S Uncharacterized protein family UPF0016 - - - - - - - - - - - - UPF0016 EH3_k127_6307496_1 1366050.N234_23725 1.496e-94 314.0 COG0707@1|root,COG0707@2|Bacteria,1R660@1224|Proteobacteria,2VPVW@28216|Betaproteobacteria,1KCYM@119060|Burkholderiaceae 28216|Betaproteobacteria M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) - - - - - - - - - - - - - EH3_k127_6307496_2 62928.azo3672 3.383e-89 299.0 COG0745@1|root,COG0745@2|Bacteria,1N7TJ@1224|Proteobacteria,2WEAK@28216|Betaproteobacteria,2M03T@206389|Rhodocyclales 206389|Rhodocyclales K Transcriptional regulatory protein, C terminal - - - ko:K07666 ko02020,ko02024,map02020,map02024 M00453 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C EH3_k127_6307496_3 748247.AZKH_3438 3.176e-86 304.0 COG0642@1|root,COG0642@2|Bacteria,1QTSX@1224|Proteobacteria,2W1JF@28216|Betaproteobacteria,2KW6A@206389|Rhodocyclales 206389|Rhodocyclales T His Kinase A (phosphoacceptor) domain - - 2.7.13.3 ko:K02484 - - - - ko00000,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA EH3_k127_6307496_0 631362.Thi970DRAFT_00381 4.009e-133 433.0 COG2207@1|root,COG2207@2|Bacteria,1MX23@1224|Proteobacteria,1RRXM@1236|Gammaproteobacteria,1WYGD@135613|Chromatiales 135613|Chromatiales K PFAM Bacterial regulatory helix-turn-helix proteins, AraC family - - - - - - - - - - - - Arabinose_bd,HTH_18 EH3_k127_631177_5 1123487.KB892864_gene2194 2.702e-38 146.0 COG0245@1|root,COG0245@2|Bacteria,1MVHA@1224|Proteobacteria,2VR7F@28216|Betaproteobacteria,2KWCF@206389|Rhodocyclales 206389|Rhodocyclales I Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) ispF - 4.6.1.12 ko:K01770 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05637 RC00002,RC01440 ko00000,ko00001,ko00002,ko01000 - - - YgbB EH3_k127_631177_1 1144319.PMI16_00389 2.824e-117 391.0 COG0642@1|root,COG2205@2|Bacteria,1MUAK@1224|Proteobacteria,2VJ6W@28216|Betaproteobacteria,472CR@75682|Oxalobacteraceae 28216|Betaproteobacteria T Periplasmic domain of Sensor histidine kinase RisS risS - 2.7.13.3 ko:K07638 ko02020,ko02026,map02020,map02026 M00445,M00742,M00743 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,RisS_PPD EH3_k127_631177_0 977880.RALTA_A1377 1.258e-120 392.0 COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2VI6B@28216|Betaproteobacteria,1K08B@119060|Burkholderiaceae 28216|Betaproteobacteria K response regulator ompR - - ko:K02483,ko:K07659 ko02020,ko02026,map02020,map02026 M00445,M00742,M00743 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C EH3_k127_631177_3 93220.LV28_00850 1.107e-45 174.0 COG1214@1|root,COG1214@2|Bacteria,1MXPH@1224|Proteobacteria,2VQR7@28216|Betaproteobacteria,1KGZI@119060|Burkholderiaceae 28216|Betaproteobacteria O Peptidase M22 glycoprotease yeaZ - - ko:K14742 - - - - ko00000,ko03016 - - - Peptidase_M22 EH3_k127_631177_4 522306.CAP2UW1_2659 5.414e-44 165.0 COG0454@1|root,COG0456@2|Bacteria,1RIE6@1224|Proteobacteria,2VUIW@28216|Betaproteobacteria 28216|Betaproteobacteria K This enzyme acetylates the N-terminal alanine of ribosomal protein S18 rimI - 2.3.1.128 ko:K03789,ko:K14742 - - - - ko00000,ko01000,ko03009,ko03016 - - - Acetyltransf_1,Peptidase_M22 EH3_k127_631177_2 977880.RALTA_A1737 1.917e-80 276.0 COG1573@1|root,COG1573@2|Bacteria,1MWX1@1224|Proteobacteria,2VPZQ@28216|Betaproteobacteria,1K1QM@119060|Burkholderiaceae 28216|Betaproteobacteria L TIGRFAM phage SPO1 DNA polymerase-related protein dpo - 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG EH3_k127_631177_6 204773.HEAR1760 5.139e-09 57.0 COG0477@1|root,COG2814@2|Bacteria,1QTWR@1224|Proteobacteria,2VIC5@28216|Betaproteobacteria,473WZ@75682|Oxalobacteraceae 28216|Betaproteobacteria EGP Major facilitator superfamily lplT - - - - - - - - - - - MFS_1 EH3_k127_6325720_6 1123392.AQWL01000004_gene2711 1.301e-24 109.0 COG2850@1|root,COG2850@2|Bacteria,1MW30@1224|Proteobacteria,2VH3D@28216|Betaproteobacteria,1KSMT@119069|Hydrogenophilales 119069|Hydrogenophilales S A domain family that is part of the cupin metalloenzyme superfamily. - - - - - - - - - - - - Cupin_4 EH3_k127_6325720_7 1123392.AQWL01000004_gene2712 1.545e-10 68.0 2AT32@1|root,31IJ3@2|Bacteria,1PWID@1224|Proteobacteria,2WC2X@28216|Betaproteobacteria,1KT0Z@119069|Hydrogenophilales 119069|Hydrogenophilales - - - - - - - - - - - - - - - EH3_k127_6325720_3 391038.Bphy_1425 4.259e-81 277.0 COG1235@1|root,COG1235@2|Bacteria,1R5N4@1224|Proteobacteria,2VKSE@28216|Betaproteobacteria,1K1VX@119060|Burkholderiaceae 28216|Betaproteobacteria S beta-lactamase - - - - - - - - - - - - Lactamase_B_2 EH3_k127_6325720_2 1265502.KB905936_gene2715 2.661e-83 301.0 COG3317@1|root,COG3317@2|Bacteria,1N670@1224|Proteobacteria,2VHS5@28216|Betaproteobacteria,4ABTG@80864|Comamonadaceae 28216|Betaproteobacteria M Nlpbdapx family lipoprotein nlpB - - ko:K07287 - - - - ko00000,ko02000 1.B.33.1 - - Lipoprotein_18 EH3_k127_6325720_1 757424.Hsero_3276 5.825e-132 426.0 COG0329@1|root,COG0329@2|Bacteria,1MUCM@1224|Proteobacteria,2VIQ4@28216|Betaproteobacteria,4733A@75682|Oxalobacteraceae 28216|Betaproteobacteria E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) dapA - 4.3.3.7 ko:K01714 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R10147 RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS EH3_k127_6325720_5 640081.Dsui_2190 1.278e-48 194.0 COG0500@1|root,COG0500@2|Bacteria,1QU9M@1224|Proteobacteria,2WGK0@28216|Betaproteobacteria,2KWMJ@206389|Rhodocyclales 206389|Rhodocyclales Q tellurite resistance protein - - - - - - - - - - - - Methyltransf_23,Methyltransf_25 EH3_k127_6325720_0 402626.Rpic_0985 1.447e-209 664.0 COG0180@1|root,COG0180@2|Bacteria,1MV4T@1224|Proteobacteria,2VIEY@28216|Betaproteobacteria,1K18D@119060|Burkholderiaceae 28216|Betaproteobacteria J Tryptophanyl-tRNA synthetase trpS - 6.1.1.2 ko:K01867 ko00970,map00970 M00359,M00360 R03664 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_1b EH3_k127_6325720_4 1121004.ATVC01000006_gene1292 3.849e-52 188.0 COG1994@1|root,COG1994@2|Bacteria,1NSFF@1224|Proteobacteria,2VHAM@28216|Betaproteobacteria,2KQW6@206351|Neisseriales 206351|Neisseriales S Peptidase M50 - - - - - - - - - - - - Peptidase_M50 EH3_k127_6344927_9 864051.BurJ1DRAFT_1231 3.538e-12 66.0 COG1970@1|root,COG1970@2|Bacteria,1RHG8@1224|Proteobacteria,2VT9K@28216|Betaproteobacteria,1KKUV@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell mscL - - ko:K03282 - - - - ko00000,ko02000 1.A.22.1 - - MscL EH3_k127_6344927_0 93220.LV28_12470 2.817e-128 420.0 COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2VJ9G@28216|Betaproteobacteria,1K0VU@119060|Burkholderiaceae 28216|Betaproteobacteria O Belongs to the peptidase S1C family degQ - - ko:K04691,ko:K04772 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Trypsin_2 EH3_k127_6344927_5 243365.CV_0043 6.239e-42 172.0 COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2VM3A@28216|Betaproteobacteria,2KPMA@206351|Neisseriales 206351|Neisseriales KLT Psort location Extracellular, score - - - ko:K07126 - - - - ko00000 - - - Sel1 EH3_k127_6344927_2 762966.HMPREF9439_01868 9.152e-95 317.0 COG0805@1|root,COG0805@2|Bacteria,1MVAY@1224|Proteobacteria,2VI2H@28216|Betaproteobacteria,4PQ6Y@995019|Sutterellaceae 28216|Betaproteobacteria U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides tatC - - ko:K03118 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - TatC EH3_k127_6344927_7 742823.HMPREF9465_00789 1.276e-36 144.0 COG1826@1|root,COG1826@2|Bacteria,1N73F@1224|Proteobacteria,2VVPX@28216|Betaproteobacteria,4PQZU@995019|Sutterellaceae 28216|Betaproteobacteria U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation tatB - - ko:K03117 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 EH3_k127_6344927_8 1408164.MOLA814_02363 2.689e-22 98.0 COG1826@1|root,COG1826@2|Bacteria,1N6S4@1224|Proteobacteria,2VVT6@28216|Betaproteobacteria,1KR3F@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system tatA - - ko:K03116 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 EH3_k127_6344927_4 1286631.X805_22710 6.119e-45 167.0 COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,2VSMS@28216|Betaproteobacteria,1KM2P@119065|unclassified Burkholderiales 28216|Betaproteobacteria FG Scavenger mRNA decapping enzyme C-term binding hitA - - ko:K02503 - - - - ko00000,ko04147 - - - DcpS_C,HIT EH3_k127_6344927_6 365046.Rta_08310 2.209e-39 156.0 COG0140@1|root,COG0140@2|Bacteria,1MZEE@1224|Proteobacteria,2VUN8@28216|Betaproteobacteria,4ADZJ@80864|Comamonadaceae 28216|Betaproteobacteria E phosphoribosyl-ATP pyrophosphohydrolase hisE - 3.6.1.31 ko:K01523 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035 RC00002 ko00000,ko00001,ko00002,ko01000 - - - PRA-PH EH3_k127_6344927_3 1231391.AMZF01000010_gene1665 1.956e-57 202.0 COG0139@1|root,COG0139@2|Bacteria,1MW67@1224|Proteobacteria,2VR9B@28216|Betaproteobacteria,3T3SJ@506|Alcaligenaceae 28216|Betaproteobacteria E Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP hisI - 3.5.4.19,3.6.1.31 ko:K01496,ko:K11755 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035,R04037 RC00002,RC01055 ko00000,ko00001,ko00002,ko01000 - - - PRA-CH EH3_k127_6344927_1 948106.AWZT01000013_gene944 4.479e-127 411.0 COG0107@1|root,COG0107@2|Bacteria,1MUS0@1224|Proteobacteria,2VHY0@28216|Betaproteobacteria,1K0MT@119060|Burkholderiaceae 28216|Betaproteobacteria E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit hisF GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - ko:K02500 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth EH3_k127_645229_3 1038869.AXAN01000010_gene5155 4.488e-35 135.0 COG2079@1|root,COG2079@2|Bacteria,1R5UM@1224|Proteobacteria,2VI2F@28216|Betaproteobacteria,1K248@119060|Burkholderiaceae 28216|Betaproteobacteria S MmgE PrpD family protein - - - - - - - - - - - - MmgE_PrpD EH3_k127_645229_1 1005048.CFU_3018 2.713e-80 277.0 COG3279@1|root,COG3279@2|Bacteria,1R9Q4@1224|Proteobacteria,2WEES@28216|Betaproteobacteria,473Y1@75682|Oxalobacteraceae 28216|Betaproteobacteria KT LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg EH3_k127_645229_4 1121013.P873_14070 2.155e-24 117.0 COG2972@1|root,COG2972@2|Bacteria,1MXVQ@1224|Proteobacteria,1S5XF@1236|Gammaproteobacteria,1XA1Y@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - His_kinase EH3_k127_645229_2 983917.RGE_02720 2.019e-49 192.0 COG2972@1|root,COG2972@2|Bacteria,1R5R0@1224|Proteobacteria,2VM7Q@28216|Betaproteobacteria,1KN1G@119065|unclassified Burkholderiales 28216|Betaproteobacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,His_kinase EH3_k127_645229_0 1031711.RSPO_c01115 1.338e-86 298.0 COG1674@1|root,COG1674@2|Bacteria,1MVPI@1224|Proteobacteria,2VHJV@28216|Betaproteobacteria,1K2W2@119060|Burkholderiaceae 28216|Betaproteobacteria D PFAM cell divisionFtsK SpoIIIE ftsK - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma EH3_k127_646482_10 864051.BurJ1DRAFT_4910 7.849e-30 124.0 COG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,2VHIK@28216|Betaproteobacteria,1KIZ4@119065|unclassified Burkholderiales 28216|Betaproteobacteria O XdhC Rossmann domain - - - ko:K07402 - - - - ko00000 - - - XdhC_C,XdhC_CoxI EH3_k127_646482_7 1223521.BBJX01000022_gene3037 1.298e-73 253.0 COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2VQ75@28216|Betaproteobacteria,4ADHR@80864|Comamonadaceae 28216|Betaproteobacteria C 2Fe-2S -binding domain protein coxS - 1.2.5.3 ko:K03518 - - R11168 RC02800 ko00000,ko01000 - - - Fer2,Fer2_2 EH3_k127_646482_0 983917.RGE_39250 0.0 1250.0 COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2VIR8@28216|Betaproteobacteria,1KN75@119065|unclassified Burkholderiales 28216|Betaproteobacteria C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain coxL - 1.2.5.3 ko:K03520 - - R11168 RC02800 ko00000,ko01000 - - - Ald_Xan_dh_C,Ald_Xan_dh_C2 EH3_k127_646482_6 864051.BurJ1DRAFT_4908 2.179e-100 336.0 COG1319@1|root,COG1319@2|Bacteria,1MUDB@1224|Proteobacteria,2VHV8@28216|Betaproteobacteria,1KN3C@119065|unclassified Burkholderiales 28216|Betaproteobacteria C CO dehydrogenase flavoprotein C-terminal domain coxM - 1.2.5.3 ko:K03519 - - R11168 RC02800 ko00000,ko01000 - - - CO_deh_flav_C,FAD_binding_5 EH3_k127_646482_8 745411.B3C1_14355 5.147e-53 205.0 COG2764@1|root,COG2764@2|Bacteria,1RF5T@1224|Proteobacteria,1S5YT@1236|Gammaproteobacteria,1J66R@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria S protein conserved in bacteria - - - ko:K04750 - - - - ko00000 - - - Glyoxalase EH3_k127_646482_4 983917.RGE_39270 4.106e-128 415.0 COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2VIJR@28216|Betaproteobacteria,1KPGK@119065|unclassified Burkholderiales 28216|Betaproteobacteria O AAA domain (dynein-related subfamily) coxD - - - - - - - - - - - AAA_5 EH3_k127_646482_3 983917.RGE_39290 4.452e-136 450.0 COG3552@1|root,COG3552@2|Bacteria,1MUHH@1224|Proteobacteria,2VNH5@28216|Betaproteobacteria,1KN9G@119065|unclassified Burkholderiales 28216|Betaproteobacteria S VWA domain containing CoxE-like protein coxE - - ko:K07161 - - - - ko00000 - - - VWA_CoxE EH3_k127_646482_9 1235457.C404_10060 2.659e-40 169.0 COG3427@1|root,COG3427@2|Bacteria,1RHUC@1224|Proteobacteria,2VREK@28216|Betaproteobacteria,1KH81@119060|Burkholderiaceae 28216|Betaproteobacteria S carbon monoxide dehydrogenase coxG - - ko:K09386 - - - - ko00000 - - - COXG EH3_k127_646482_2 365044.Pnap_1107 8.357e-169 544.0 COG0297@1|root,COG0297@2|Bacteria,1MUGM@1224|Proteobacteria,2VH1G@28216|Betaproteobacteria,4ACAA@80864|Comamonadaceae 28216|Betaproteobacteria F Synthesizes alpha-1,4-glucan chains using ADP-glucose glgA - 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5,Glycos_transf_1 EH3_k127_646482_1 365044.Pnap_1106 1.953e-194 613.0 COG0448@1|root,COG0448@2|Bacteria,1MVTC@1224|Proteobacteria,2VIP2@28216|Betaproteobacteria,4ABK0@80864|Comamonadaceae 28216|Betaproteobacteria H Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans glgC - 2.7.7.27 ko:K00975 ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026 M00565 R00948 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase EH3_k127_646482_5 375286.mma_0025 4.465e-107 359.0 COG3616@1|root,COG3616@2|Bacteria,1MVQE@1224|Proteobacteria,2VIUU@28216|Betaproteobacteria,478NG@75682|Oxalobacteraceae 28216|Betaproteobacteria E Putative serine dehydratase domain - - - - - - - - - - - - Ala_racemase_N,D-ser_dehydrat EH3_k127_6477378_2 987059.RBXJA2T_00160 7.029e-67 234.0 COG0213@1|root,COG0213@2|Bacteria,1MV3H@1224|Proteobacteria,2VHXI@28216|Betaproteobacteria,1KK9X@119065|unclassified Burkholderiales 28216|Betaproteobacteria F The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis - - 2.4.2.4 ko:K00758 ko00240,ko00983,ko01100,ko05219,map00240,map00983,map01100,map05219 - R01570,R02484,R08222,R08230 RC00063 ko00000,ko00001,ko01000 - - - Glycos_trans_3N,Glycos_transf_3,PYNP_C EH3_k127_6477378_1 535289.Dtpsy_1299 4.083e-138 455.0 COG1236@1|root,COG1236@2|Bacteria,1MUDD@1224|Proteobacteria,2VHFX@28216|Betaproteobacteria,4A9N8@80864|Comamonadaceae 28216|Betaproteobacteria J RNA-metabolising metallo-beta-lactamase - - - ko:K07576 - - - - ko00000 - - - Beta-Casp,Lactamase_B,RMMBL EH3_k127_6477378_5 1167006.UWK_02970 0.0003713 50.0 2AG2Y@1|root,3167D@2|Bacteria,1NN09@1224|Proteobacteria,43EY5@68525|delta/epsilon subdivisions,2X2JQ@28221|Deltaproteobacteria,2MP8Q@213118|Desulfobacterales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - EH3_k127_6477378_0 768671.ThimaDRAFT_2675 1.537e-213 675.0 COG1032@1|root,COG1032@2|Bacteria,1Q5NG@1224|Proteobacteria,1RQCS@1236|Gammaproteobacteria,1X1QV@135613|Chromatiales 135613|Chromatiales C B12 binding domain - - - - - - - - - - - - B12-binding,Radical_SAM EH3_k127_6477378_3 1123487.KB892836_gene3269 1.668e-50 188.0 COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,2VKQH@28216|Betaproteobacteria,2KW5S@206389|Rhodocyclales 206389|Rhodocyclales L HNH endonuclease - - - - - - - - - - - - HNH_5 EH3_k127_6477378_4 1031711.RSPO_c01362 7.559e-26 114.0 COG2913@1|root,COG2913@2|Bacteria,1N9H2@1224|Proteobacteria,2VVXE@28216|Betaproteobacteria,1K7HW@119060|Burkholderiaceae 28216|Betaproteobacteria J Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - - - - - - - - - - SmpA_OmlA EH3_k127_6487905_1 1000565.METUNv1_03595 4.535e-70 237.0 COG0665@1|root,COG0665@2|Bacteria,1MVM6@1224|Proteobacteria,2VKCE@28216|Betaproteobacteria,2KY7Z@206389|Rhodocyclales 206389|Rhodocyclales E FAD dependent oxidoreductase soxB - 1.5.3.1 ko:K00303 ko00260,ko01100,map00260,map01100 - R00610 RC00060,RC00557 ko00000,ko00001,ko01000 - - - DAO EH3_k127_6487905_2 159450.NH14_09605 2.247e-41 153.0 COG4311@1|root,COG4311@2|Bacteria,1NA4N@1224|Proteobacteria,2VX6V@28216|Betaproteobacteria,1KE7B@119060|Burkholderiaceae 28216|Betaproteobacteria E Sarcosine oxidase, delta subunit family - - 1.5.3.1 ko:K00304 ko00260,ko01100,map00260,map01100 - R00610 RC00060,RC00557 ko00000,ko00001,ko01000 - - - SoxD EH3_k127_6487905_0 159450.NH14_09600 8.713e-165 529.0 COG0404@1|root,COG0446@1|root,COG0404@2|Bacteria,COG0446@2|Bacteria,1MVEK@1224|Proteobacteria,2VK5U@28216|Betaproteobacteria,1KD3N@119060|Burkholderiaceae 28216|Betaproteobacteria H Sarcosine oxidase, gamma subunit family - - 1.5.3.1 ko:K00302 ko00260,ko01100,map00260,map01100 - R00610 RC00060,RC00557 ko00000,ko00001,ko01000 - - - Fer2_4,GCV_T,GCV_T_C,Pyr_redox_2 EH3_k127_6567908_1 159450.NH14_04590 8.507e-156 496.0 COG0667@1|root,COG0667@2|Bacteria,1MU1S@1224|Proteobacteria,2VMYU@28216|Betaproteobacteria,1K2AM@119060|Burkholderiaceae 28216|Betaproteobacteria C aldo keto reductase - - - ko:K19265 - - - - ko00000,ko01000 - - - Aldo_ket_red EH3_k127_6567908_4 640512.BC1003_0101 7.581e-09 59.0 2DRVR@1|root,33DAW@2|Bacteria,1NJ5A@1224|Proteobacteria,2VXSF@28216|Betaproteobacteria,1KAHJ@119060|Burkholderiaceae 28216|Betaproteobacteria S Cysteine-rich CWC - - - - - - - - - - - - Cys_rich_CWC EH3_k127_6567908_0 713586.KB900536_gene456 2.436e-165 527.0 COG4948@1|root,COG4948@2|Bacteria,1MYZE@1224|Proteobacteria,1RYFV@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Mandelate Racemase Muconate Lactonizing - - 4.2.1.156,4.2.1.42,5.1.2.2,5.5.1.25 ko:K01781,ko:K20023,ko:K20549 ko00053,ko00627,ko01120,map00053,map00627,map01120 - R03791,R04161,R05608 RC00543,RC00998 ko00000,ko00001,ko01000 - - - MR_MLE_C,MR_MLE_N EH3_k127_6567908_2 1121920.AUAU01000006_gene240 5.664e-105 350.0 COG0204@1|root,COG0204@2|Bacteria 2|Bacteria I Acyl-transferase yihG - - - - - - - - - - - Acyltransferase EH3_k127_6567908_3 742821.HMPREF9464_00306 1.273e-58 214.0 COG4108@1|root,COG4108@2|Bacteria,1MU7X@1224|Proteobacteria,2VIV3@28216|Betaproteobacteria,4PQH6@995019|Sutterellaceae 28216|Betaproteobacteria J Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP prfC - - ko:K02837 - - - - ko00000,ko03012 - - - GTP_EFTU,GTP_EFTU_D2,RF3_C EH3_k127_6583711_0 76114.ebA7003 3.698e-165 523.0 COG0296@1|root,COG0296@2|Bacteria,1QTVN@1224|Proteobacteria,2VGZZ@28216|Betaproteobacteria,2KUPD@206389|Rhodocyclales 206389|Rhodocyclales G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position glgB - 2.4.1.18 ko:K00700 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R02110 - ko00000,ko00001,ko00002,ko01000,ko04147 - CBM48,GH13 - Alpha-amylase,Alpha-amylase_C,CBM_48 EH3_k127_6583711_1 1304883.KI912532_gene1393 5.253e-72 255.0 COG0837@1|root,COG0837@2|Bacteria,1MVFI@1224|Proteobacteria,2VH5F@28216|Betaproteobacteria,2KWIE@206389|Rhodocyclales 206389|Rhodocyclales H Belongs to the bacterial glucokinase family glk - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Glucokinase EH3_k127_6583711_5 686340.Metal_0373 1.62e-06 55.0 2AUTV@1|root,31KGX@2|Bacteria,1QIC2@1224|Proteobacteria,1TG6B@1236|Gammaproteobacteria,1XFSU@135618|Methylococcales 135618|Methylococcales S Protein of unknown function (DUF2934) - - - - - - - - - - - - DUF2934 EH3_k127_6583711_4 94624.Bpet2597 2.632e-12 74.0 2C5P4@1|root,3310H@2|Bacteria,1N6V1@1224|Proteobacteria,2VVVI@28216|Betaproteobacteria,3T4VP@506|Alcaligenaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - CarboxypepD_reg EH3_k127_6583711_2 640081.Dsui_3393 6.341e-63 231.0 COG0475@1|root,COG0475@2|Bacteria,1R9PF@1224|Proteobacteria,2VKV2@28216|Betaproteobacteria,2KWJB@206389|Rhodocyclales 206389|Rhodocyclales P Sodium/hydrogen exchanger family - - - - - - - - - - - - Na_H_Exchanger EH3_k127_6583711_3 1286093.C266_14567 1.432e-57 207.0 COG2170@1|root,COG2170@2|Bacteria,1MX4N@1224|Proteobacteria,2VK27@28216|Betaproteobacteria,1K3W2@119060|Burkholderiaceae 28216|Betaproteobacteria H ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity ybdK - - ko:K06048 - - - - ko00000,ko01000 - - - GCS2 EH3_k127_6587865_5 1123393.KB891327_gene386 1.552e-26 114.0 COG0713@1|root,COG0713@2|Bacteria,1RH0S@1224|Proteobacteria,2VSDV@28216|Betaproteobacteria,1KT7T@119069|Hydrogenophilales 119069|Hydrogenophilales C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoK - 1.6.5.3 ko:K00340 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q2 EH3_k127_6587865_3 1157708.KB907450_gene6543 2.071e-62 225.0 COG0839@1|root,COG0839@2|Bacteria,1MWJV@1224|Proteobacteria,2VJ4G@28216|Betaproteobacteria,4AB48@80864|Comamonadaceae 28216|Betaproteobacteria C Belongs to the complex I subunit 6 family nuoJ - 1.6.5.3 ko:K00339 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q3 EH3_k127_6587865_2 375286.mma_1470 2.611e-84 299.0 COG1143@1|root,COG1143@2|Bacteria,1MV90@1224|Proteobacteria,2VIQP@28216|Betaproteobacteria,472YC@75682|Oxalobacteraceae 28216|Betaproteobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoI - 1.6.5.3 ko:K00338 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer4 EH3_k127_6587865_1 1247726.MIM_c24520 7.34e-162 523.0 COG1005@1|root,COG1005@2|Bacteria,1MU2R@1224|Proteobacteria,2VHD0@28216|Betaproteobacteria,3T344@506|Alcaligenaceae 28216|Betaproteobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone nuoH - 1.6.5.3 ko:K00337 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - NADHdh EH3_k127_6587865_0 757424.Hsero_1773 4.071e-315 982.0 COG1034@1|root,COG1034@2|Bacteria,1P8MN@1224|Proteobacteria,2VJYV@28216|Betaproteobacteria,4731E@75682|Oxalobacteraceae 28216|Betaproteobacteria C NADH-quinone oxidoreductase nuoG - 1.6.5.3 ko:K00336 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer2_4,Molybdopterin,Molydop_binding,NADH-G_4Fe-4S_3 EH3_k127_6587865_4 1095769.CAHF01000011_gene2497 1.186e-33 129.0 COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2VJJ1@28216|Betaproteobacteria,4739F@75682|Oxalobacteraceae 28216|Betaproteobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain nuoF - 1.6.5.3 ko:K00335 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_51K,NADH_4Fe-4S,SLBB EH3_k127_6617016_2 1218076.BAYB01000012_gene2563 7.405e-23 99.0 COG0027@1|root,COG0027@2|Bacteria,1N3KA@1224|Proteobacteria,2VH4M@28216|Betaproteobacteria,1K1VT@119060|Burkholderiaceae 28216|Betaproteobacteria F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate purT - 2.1.2.2 ko:K08289 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp,Epimerase EH3_k127_6617016_0 1203554.HMPREF1476_01523 9.97e-70 244.0 COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2VMX4@28216|Betaproteobacteria,4PQQ9@995019|Sutterellaceae 28216|Betaproteobacteria K Bacterial regulatory proteins, luxR family epsR - - - - - - - - - - - GerE,Response_reg EH3_k127_6617016_1 1000565.METUNv1_01903 1.19e-66 242.0 COG0642@1|root,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2VIXT@28216|Betaproteobacteria,2KUH6@206389|Rhodocyclales 206389|Rhodocyclales T Histidine kinase - - 2.7.13.3 ko:K20975 ko02020,ko02025,map02020,map02025 M00820 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA,Response_reg EH3_k127_6625768_0 1097668.BYI23_A007760 0.0 1019.0 COG0187@1|root,COG0187@2|Bacteria,1MVH1@1224|Proteobacteria,2VHBQ@28216|Betaproteobacteria,1K0F8@119060|Burkholderiaceae 28216|Betaproteobacteria L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule parE - - ko:K02622 - - - - ko00000,ko01000,ko02048,ko03032,ko03036 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim EH3_k127_6625768_1 1532557.JL37_17890 5.055e-150 484.0 COG2223@1|root,COG2223@2|Bacteria,1QU76@1224|Proteobacteria,2WGTH@28216|Betaproteobacteria,3T9IZ@506|Alcaligenaceae 28216|Betaproteobacteria P COG0477 Permeases of the major facilitator superfamily yhjX_2 - - - - - - - - - - - MFS_1 EH3_k127_6625768_3 583345.Mmol_1353 3.149e-79 270.0 COG1949@1|root,COG1949@2|Bacteria,1R9WX@1224|Proteobacteria,2VIA2@28216|Betaproteobacteria,2KKU2@206350|Nitrosomonadales 206350|Nitrosomonadales L 3'-to-5' exoribonuclease specific for small oligoribonucleotides orn - - ko:K13288 ko03008,map03008 - - - ko00000,ko00001,ko01000,ko03009,ko03019 - - - RNase_T EH3_k127_6625768_2 1071679.BG57_01565 4.91e-138 449.0 COG0501@1|root,COG0501@2|Bacteria,1MUXT@1224|Proteobacteria,2VI1Y@28216|Betaproteobacteria,1K0JS@119060|Burkholderiaceae 28216|Betaproteobacteria O Peptidase M48 htpX_2 - 3.4.24.84 ko:K06013 ko00900,ko01130,map00900,map01130 - R09845 RC00141 ko00000,ko00001,ko01000,ko01002,ko04147 - - - Peptidase_M48,Peptidase_M48_N EH3_k127_6633734_1 85643.Tmz1t_3417 3.915e-103 355.0 COG1364@1|root,COG1364@2|Bacteria,1MU0T@1224|Proteobacteria,2VJ84@28216|Betaproteobacteria,2KUJ7@206389|Rhodocyclales 206389|Rhodocyclales E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate argJ - 2.3.1.1,2.3.1.35 ko:K00620 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R00259,R02282 RC00004,RC00064 ko00000,ko00001,ko00002,ko01000 - - - ArgJ EH3_k127_6633734_0 62928.azo1293 1.562e-119 389.0 COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,2VH5B@28216|Betaproteobacteria,2KVC4@206389|Rhodocyclales 206389|Rhodocyclales H Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell glnE - 2.7.7.42,2.7.7.89 ko:K00982 - - - - ko00000,ko01000 - - - GlnD_UR_UTase,GlnE EH3_k127_6638080_2 1198114.AciX9_1866 1.573e-84 289.0 COG1215@1|root,COG1215@2|Bacteria,3Y704@57723|Acidobacteria,2JKTP@204432|Acidobacteriia 204432|Acidobacteriia M Glycosyl transferase family group 2 - - - - - - - - - - - - Glycos_transf_2 EH3_k127_6638080_4 288000.BBta_4105 2.367e-53 205.0 COG1835@1|root,COG1835@2|Bacteria,1RF4N@1224|Proteobacteria,2U8NZ@28211|Alphaproteobacteria,3K22B@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria I Acyltransferase family - - - - - - - - - - - - Acyl_transf_3 EH3_k127_6638080_0 768671.ThimaDRAFT_3238 1.932e-92 319.0 2BUET@1|root,32PQT@2|Bacteria,1RG6G@1224|Proteobacteria,1SKB5@1236|Gammaproteobacteria 1236|Gammaproteobacteria S O-antigen ligase like membrane protein - - - - - - - - - - - - Wzy_C EH3_k127_6638080_3 557598.LHK_00819 4.544e-73 274.0 COG2148@1|root,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2VH0H@28216|Betaproteobacteria,2KTUY@206351|Neisseriales 206351|Neisseriales M Bacterial sugar transferase - - - - - - - - - - - - Bac_transf EH3_k127_6638080_1 243233.MCA1437 1.329e-86 312.0 COG1922@1|root,COG2148@1|root,COG1922@2|Bacteria,COG2148@2|Bacteria,1N1HD@1224|Proteobacteria,1RP6P@1236|Gammaproteobacteria,1XFRP@135618|Methylococcales 135618|Methylococcales M Belongs to the glycosyltransferase 26 family - - 2.4.1.187 ko:K05946 ko05111,map05111 - - - ko00000,ko00001,ko01000,ko01003 - GT26 - Glyco_tran_WecB EH3_k127_6638080_5 557598.LHK_00820 1.47e-27 131.0 COG1208@1|root,COG1208@2|Bacteria 2|Bacteria JM COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon - - 2.7.1.52,2.7.7.13,5.4.2.8 ko:K00966,ko:K05305,ko:K16881 ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130 M00114,M00361,M00362 R00885,R01818,R03161 RC00002,RC00078,RC00408 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transf_3,NTP_transferase EH3_k127_6638080_6 557598.LHK_00821 2.467e-26 111.0 COG1366@1|root,COG1366@2|Bacteria 2|Bacteria T antisigma factor binding rsbV - - ko:K04749,ko:K06378 - - - - ko00000,ko03021 - - - STAS,STAS_2 EH3_k127_664426_0 748247.AZKH_3560 1.535e-161 510.0 COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,2VJ5Q@28216|Betaproteobacteria,2KV41@206389|Rhodocyclales 206389|Rhodocyclales L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrA - 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV EH3_k127_664426_1 1266925.JHVX01000006_gene2210 1.444e-74 254.0 COG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,2VJ4R@28216|Betaproteobacteria,37277@32003|Nitrosomonadales 28216|Betaproteobacteria F Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine mtaD - 3.5.4.28,3.5.4.31 ko:K12960 ko00270,ko01100,map00270,map01100 - R09660 RC00477 ko00000,ko00001,ko01000 - - - Amidohydro_1 EH3_k127_6661972_0 94624.Bpet4169 4.524e-95 327.0 COG0626@1|root,COG0626@2|Bacteria,1MU9E@1224|Proteobacteria,2VHNW@28216|Betaproteobacteria,3T30P@506|Alcaligenaceae 28216|Betaproteobacteria E Cys/Met metabolism PLP-dependent enzyme metC - 4.4.1.8 ko:K01760 ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230 M00017 R00782,R01286,R02408,R04941 RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303 ko00000,ko00001,ko00002,ko01000 - - - Cys_Met_Meta_PP EH3_k127_6661972_2 159087.Daro_0278 1.193e-12 80.0 COG3650@1|root,COG3650@2|Bacteria 2|Bacteria CO response to hydrogen peroxide - - - ko:K08985 - - - - ko00000 - - - - EH3_k127_6661972_3 1121015.N789_09565 5.782e-10 72.0 COG3015@1|root,COG3187@1|root,COG3015@2|Bacteria,COG3187@2|Bacteria,1NZ8R@1224|Proteobacteria,1S0ZA@1236|Gammaproteobacteria 1236|Gammaproteobacteria MP Copper homeostasis cutF GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0010810,GO:0016020,GO:0019867,GO:0030155,GO:0030312,GO:0030313,GO:0031975,GO:0042802,GO:0044462,GO:0044464,GO:0050789,GO:0065007,GO:0071944 - ko:K06079 ko01503,map01503 - - - ko00000,ko00001 - - - META,NlpE,NlpE_C EH3_k127_6661972_1 257310.BB4943 7.634e-74 252.0 COG0491@1|root,COG0491@2|Bacteria,1MUXF@1224|Proteobacteria,2VKJX@28216|Betaproteobacteria,3T31I@506|Alcaligenaceae 28216|Betaproteobacteria S Zn-dependent hydrolases including glyoxylases - - - - - - - - - - - - Lactamase_B EH3_k127_668499_0 1163617.SCD_n02012 3.142e-91 303.0 COG0477@1|root,COG2814@2|Bacteria,1NE49@1224|Proteobacteria,2VNGV@28216|Betaproteobacteria 28216|Betaproteobacteria EGP Major facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_668499_1 1173020.Cha6605_4325 3.164e-75 259.0 COG0730@1|root,COG0730@2|Bacteria,1G72I@1117|Cyanobacteria 1117|Cyanobacteria S Sulfite exporter TauE/SafE - - - ko:K07090 - - - - ko00000 - - - TauE EH3_k127_668499_2 192952.MM_1452 6.199e-13 79.0 COG0589@1|root,arCOG00449@2157|Archaea,2Y8D8@28890|Euryarchaeota 28890|Euryarchaeota T Universal stress protein family - - - - - - - - - - - - Usp EH3_k127_668499_3 1163617.SCD_n02017 2.838e-08 65.0 COG0659@1|root,COG0659@2|Bacteria,1MWDF@1224|Proteobacteria,2VHKJ@28216|Betaproteobacteria 28216|Betaproteobacteria P Sulfate transporter antisigma-factor antagonist STAS - - - ko:K03321 - - - - ko00000,ko02000 2.A.53.3 - - STAS,Sulfate_transp EH3_k127_6689122_4 420662.Mpe_A3693 1.427e-120 393.0 COG1173@1|root,COG1173@2|Bacteria,1MU26@1224|Proteobacteria,2VHWM@28216|Betaproteobacteria,1KKHI@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Binding-protein-dependent transport system inner membrane component - - - ko:K02034 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1,OppC_N EH3_k127_6689122_3 420662.Mpe_A3694 5.852e-145 468.0 COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2VN7U@28216|Betaproteobacteria,1KJSF@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Binding-protein-dependent transport system inner membrane component gsiC_8 - - ko:K02033 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - BPD_transp_1 EH3_k127_6689122_2 987059.RBXJA2T_07623 2.621e-189 616.0 COG4166@1|root,COG4166@2|Bacteria,1R87R@1224|Proteobacteria,2VKFJ@28216|Betaproteobacteria,1KJPX@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - - - - - - - - - - SBP_bac_5 EH3_k127_6689122_0 420662.Mpe_A3695 8.64e-221 701.0 COG4166@1|root,COG4166@2|Bacteria,1R87R@1224|Proteobacteria,2VKFJ@28216|Betaproteobacteria,1KJPX@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - - - - - - - - - - SBP_bac_5 EH3_k127_6689122_1 987059.RBXJA2T_07623 1.689e-214 681.0 COG4166@1|root,COG4166@2|Bacteria,1R87R@1224|Proteobacteria,2VKFJ@28216|Betaproteobacteria,1KJPX@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - - - - - - - - - - SBP_bac_5 EH3_k127_6689122_5 864051.BurJ1DRAFT_0478 9.755e-35 155.0 COG1075@1|root,COG1075@2|Bacteria,1R75P@1224|Proteobacteria,2VU4P@28216|Betaproteobacteria,1KIWZ@119065|unclassified Burkholderiales 28216|Betaproteobacteria S PGAP1-like protein - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6,PGAP1 EH3_k127_6693925_3 887898.HMPREF0551_0637 9.088e-40 150.0 COG1472@1|root,COG1472@2|Bacteria,1MVAJ@1224|Proteobacteria,2VHAR@28216|Betaproteobacteria,1K0VW@119060|Burkholderiaceae 28216|Betaproteobacteria G Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides nagZ - 2.7.8.7,3.2.1.52 ko:K00997,ko:K01207 ko00520,ko00531,ko00770,ko01100,ko01501,map00520,map00531,map00770,map01100,map01501 M00628 R00022,R01625,R05963,R07809,R07810,R10831 RC00002,RC00049 ko00000,ko00001,ko00002,ko01000 - - - Glyco_hydro_3 EH3_k127_6693925_4 640081.Dsui_2464 2.16e-39 150.0 COG0736@1|root,COG0736@2|Bacteria,1MZBF@1224|Proteobacteria,2VT0P@28216|Betaproteobacteria,2KWUE@206389|Rhodocyclales 206389|Rhodocyclales I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein acpS - 2.7.8.7 ko:K00997 ko00770,map00770 - R01625 RC00002 ko00000,ko00001,ko01000 - - - ACPS EH3_k127_6693925_0 243160.BMA0546 4.208e-107 354.0 COG0854@1|root,COG0854@2|Bacteria,1MU9W@1224|Proteobacteria,2VHY7@28216|Betaproteobacteria,1K06W@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate pdxJ - 2.6.99.2 ko:K03474 ko00750,ko01100,map00750,map01100 M00124 R05838 RC01476 ko00000,ko00001,ko00002,ko01000 - - - PdxJ EH3_k127_6693925_2 1458427.BAWN01000015_gene1109 1.113e-43 173.0 COG1381@1|root,COG1381@2|Bacteria,1RHIC@1224|Proteobacteria,2VJUC@28216|Betaproteobacteria,4A9W5@80864|Comamonadaceae 28216|Betaproteobacteria L Involved in DNA repair and RecF pathway recombination recO - - ko:K03584 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecO_C,RecO_N EH3_k127_6693925_1 1123487.KB892841_gene4327 1.003e-82 278.0 COG1159@1|root,COG1159@2|Bacteria,1MUKT@1224|Proteobacteria,2VHYP@28216|Betaproteobacteria,2KVT3@206389|Rhodocyclales 206389|Rhodocyclales S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism era - - ko:K03595 - - - - ko00000,ko03009,ko03029 - - - KH_2,MMR_HSR1 EH3_k127_6694430_3 629773.AORY01000001_gene2236 1.465e-15 78.0 COG2267@1|root,COG2267@2|Bacteria,1R41P@1224|Proteobacteria,2TRY2@28211|Alphaproteobacteria,2K1R9@204457|Sphingomonadales 204457|Sphingomonadales I hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4 EH3_k127_6694430_2 395019.Bmul_3124 2.192e-68 235.0 COG0242@1|root,COG0242@2|Bacteria,1RA2P@1224|Proteobacteria,2VQ4N@28216|Betaproteobacteria,1K15X@119060|Burkholderiaceae 28216|Betaproteobacteria J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions def - 3.5.1.88 ko:K01462 - - - - ko00000,ko01000 - - - Pep_deformylase EH3_k127_6694430_1 1265502.KB905960_gene308 1.077e-104 353.0 COG1652@1|root,COG1652@2|Bacteria,1MUBV@1224|Proteobacteria,2VIZJ@28216|Betaproteobacteria,4AAX7@80864|Comamonadaceae 28216|Betaproteobacteria S Peptidoglycan-binding LysM - - - - - - - - - - - - LysM EH3_k127_6694430_0 204773.HEAR0116 8.698e-112 374.0 COG0758@1|root,COG0758@2|Bacteria,1MVF6@1224|Proteobacteria,2VH3W@28216|Betaproteobacteria,47340@75682|Oxalobacteraceae 28216|Betaproteobacteria LU DNA recombination-mediator protein A smf - - ko:K04096 - - - - ko00000 - - - DNA_processg_A EH3_k127_6694430_4 62928.azo0096 2.129e-11 67.0 COG2922@1|root,COG2922@2|Bacteria,1RD5F@1224|Proteobacteria,2VRJF@28216|Betaproteobacteria,2KWJJ@206389|Rhodocyclales 206389|Rhodocyclales S Belongs to the Smg family smg - - ko:K03747 - - - - ko00000 - - - DUF494 EH3_k127_6709083_0 572477.Alvin_0031 8.162e-223 706.0 COG0187@1|root,COG1372@1|root,COG0187@2|Bacteria,COG1372@2|Bacteria,1MVKT@1224|Proteobacteria,1RNB2@1236|Gammaproteobacteria,1WVZ4@135613|Chromatiales 135613|Chromatiales L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrB - 5.99.1.3 ko:K02470 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim EH3_k127_6711628_1 397945.Aave_4646 2.247e-51 183.0 COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,2VJGC@28216|Betaproteobacteria,4AC8V@80864|Comamonadaceae 28216|Betaproteobacteria C PFAM pyruvate ferredoxin flavodoxin oxidoreductase - - 1.2.7.8 ko:K04090 - - - - br01601,ko00000,ko01000 - - - POR,TPP_enzyme_C EH3_k127_6711628_2 543728.Vapar_1457 1.219e-35 145.0 COG0346@1|root,COG0346@2|Bacteria,1NI3B@1224|Proteobacteria,2VYHQ@28216|Betaproteobacteria,4AHMG@80864|Comamonadaceae 28216|Betaproteobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase EH3_k127_6711628_4 1122612.AUBA01000010_gene109 2.281e-28 124.0 2E4GE@1|root,32ZBK@2|Bacteria,1P2JS@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - EH3_k127_6711628_3 102232.GLO73106DRAFT_00015790 1.694e-29 132.0 COG1520@1|root,COG3210@1|root,COG1520@2|Bacteria,COG3210@2|Bacteria 2|Bacteria U domain, Protein - - - ko:K15125,ko:K19231 ko05133,map05133 - - - ko00000,ko00001,ko00536,ko02000 1.B.12 - - DUF637,ESPR,Fil_haemagg_2,Haemagg_act,PT-VENN EH3_k127_6711628_0 983917.RGE_02810 1.957e-91 309.0 COG0494@1|root,COG0494@2|Bacteria,1RAFY@1224|Proteobacteria,2WG61@28216|Betaproteobacteria,1KM52@119065|unclassified Burkholderiales 28216|Betaproteobacteria L NUDIX domain - - - - - - - - - - - - DUF4743,NUDIX EH3_k127_6715014_1 1366050.N234_19560 7.911e-39 149.0 COG0048@1|root,COG0048@2|Bacteria,1RCWY@1224|Proteobacteria,2VR2H@28216|Betaproteobacteria,1K79Y@119060|Burkholderiaceae 28216|Betaproteobacteria J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit rpsL - - ko:K02950 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosom_S12_S23 EH3_k127_6715014_0 1095769.CAHF01000004_gene2748 0.0 1626.0 COG0086@1|root,COG0086@2|Bacteria,1MU3M@1224|Proteobacteria,2VIF3@28216|Betaproteobacteria,4726T@75682|Oxalobacteraceae 28216|Betaproteobacteria K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC - 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 EH3_k127_6716261_3 742159.HMPREF0004_2170 5.947e-133 434.0 COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2VIK8@28216|Betaproteobacteria,3T1W4@506|Alcaligenaceae 28216|Betaproteobacteria BQ Deacetylases including yeast histone deacetylase and acetoin utilization protein hdaH - - - - - - - - - - - Hist_deacetyl EH3_k127_6716261_4 1095769.CAHF01000013_gene3257 2.833e-125 408.0 COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,2VKJJ@28216|Betaproteobacteria,4735Q@75682|Oxalobacteraceae 28216|Betaproteobacteria S ATPase family associated with various cellular activities (AAA) moxR - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 EH3_k127_6716261_7 1095769.CAHF01000013_gene3258 5.622e-66 238.0 COG1721@1|root,COG1721@2|Bacteria,1R3QD@1224|Proteobacteria,2VN9P@28216|Betaproteobacteria,473SB@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function DUF58 - - - - - - - - - - - - DUF58 EH3_k127_6716261_0 1095769.CAHF01000013_gene3259 9.496e-172 562.0 COG1305@1|root,COG1305@2|Bacteria,1MWCE@1224|Proteobacteria,2VHZP@28216|Betaproteobacteria,4726K@75682|Oxalobacteraceae 28216|Betaproteobacteria E Domain of unknown function (DUF3488) - - 2.3.2.13 ko:K22452 - - - - ko00000,ko01000 - - - DUF3488,DUF4129,Transglut_core EH3_k127_6716261_8 497321.C664_11117 1.227e-62 228.0 COG2951@1|root,COG2951@2|Bacteria,1MUZ3@1224|Proteobacteria,2VJGZ@28216|Betaproteobacteria,2KVBT@206389|Rhodocyclales 206389|Rhodocyclales M lytic murein transglycosylase mltB - - ko:K08305 - - - - ko00000,ko01000,ko01011 - GH103 - SLT_2 EH3_k127_6716261_6 322710.Avin_50200 1.394e-84 285.0 COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,1S2I8@1236|Gammaproteobacteria 1236|Gammaproteobacteria O maleylacetoacetate isomerase maiA - 5.2.1.2,5.2.1.4 ko:K01800,ko:K01801 ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120 M00044 R03181,R03868 RC00867 ko00000,ko00001,ko00002,ko01000 - - - GST_C,GST_C_2,GST_C_3,GST_N,GST_N_3 EH3_k127_6716261_5 1095769.CAHF01000008_gene3577 4.031e-101 334.0 COG0179@1|root,COG0179@2|Bacteria,1MVFA@1224|Proteobacteria,2VHG8@28216|Betaproteobacteria,473Z2@75682|Oxalobacteraceae 28216|Betaproteobacteria Q Fumarylacetoacetate (FAA) hydrolase family - - 3.7.1.20 ko:K16165 ko00350,ko01100,ko01120,map00350,map01100,map01120 - R01085 RC00326,RC00446 ko00000,ko00001,ko01000 - - - FAA_hydrolase EH3_k127_6716261_1 795666.MW7_0491 2.59e-161 526.0 COG1178@1|root,COG1178@2|Bacteria,1MWEV@1224|Proteobacteria,2VI20@28216|Betaproteobacteria,1K2SU@119060|Burkholderiaceae 28216|Betaproteobacteria P transporter fbpB - - ko:K02011 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - BPD_transp_1 EH3_k127_6716261_2 76114.ebA4892 1.907e-141 458.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VHGM@28216|Betaproteobacteria,2KVQ7@206389|Rhodocyclales 206389|Rhodocyclales P Belongs to the ABC transporter superfamily - - 3.6.3.30 ko:K02010 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.10 - - ABC_tran,TOBE_2 EH3_k127_6717091_0 296591.Bpro_0678 3.426e-160 506.0 COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,2VH5H@28216|Betaproteobacteria,4A9PE@80864|Comamonadaceae 28216|Betaproteobacteria P Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity katG - 1.11.1.21 ko:K03782 ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110 - R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906 RC00034,RC00213,RC00767,RC02141 ko00000,ko00001,ko01000 - - - peroxidase EH3_k127_6717091_3 535289.Dtpsy_2523 2.631e-07 55.0 COG2433@1|root,COG2433@2|Bacteria,1RJ1Q@1224|Proteobacteria,2VKSJ@28216|Betaproteobacteria,4ACTJ@80864|Comamonadaceae 28216|Betaproteobacteria L PFAM transposase IS66 - - - - - - - - - - - - DDE_Tnp_IS66,DDE_Tnp_IS66_C,LZ_Tnp_IS66,zf-IS66 EH3_k127_6717091_2 85643.Tmz1t_1520 2.852e-109 370.0 COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2VJNG@28216|Betaproteobacteria,2KVMK@206389|Rhodocyclales 206389|Rhodocyclales E ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains - - - ko:K01996 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C EH3_k127_6717091_1 76114.ebA3559 3.544e-120 390.0 COG0411@1|root,COG4177@1|root,COG0411@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2VH2P@28216|Betaproteobacteria,2KUY7@206389|Rhodocyclales 206389|Rhodocyclales P Belongs to the binding-protein-dependent transport system permease family - - - ko:K01995,ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C,BPD_transp_2 EH3_k127_6729613_1 762376.AXYL_00778 2.109e-69 239.0 COG1473@1|root,COG1473@2|Bacteria,1MUIV@1224|Proteobacteria,2VM4Z@28216|Betaproteobacteria,3T8WW@506|Alcaligenaceae 28216|Betaproteobacteria S Metal-dependent amidase aminoacylase carboxypeptidase yxeP_2 - - - - - - - - - - - M20_dimer,Peptidase_M20 EH3_k127_6729613_0 1265502.KB905948_gene994 3.526e-167 542.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2VHCV@28216|Betaproteobacteria,4ABBW@80864|Comamonadaceae 28216|Betaproteobacteria E PFAM extracellular solute-binding protein, family 5 - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 EH3_k127_6743147_2 987059.RBXJA2T_17534 5.313e-135 442.0 COG0389@1|root,COG0389@2|Bacteria,1MUUH@1224|Proteobacteria,2VJNS@28216|Betaproteobacteria,1KJXY@119065|unclassified Burkholderiales 28216|Betaproteobacteria L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII dinB GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 ko:K02346,ko:K03502 - - - - ko00000,ko01000,ko03400 - - - IMS,IMS_C,IMS_HHH EH3_k127_6743147_8 338969.Rfer_0637 9.022e-50 183.0 COG2905@1|root,COG2905@2|Bacteria,1N7MU@1224|Proteobacteria,2VVGU@28216|Betaproteobacteria 28216|Betaproteobacteria T Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS EH3_k127_6743147_0 296591.Bpro_3401 2.864e-182 582.0 COG0477@1|root,COG2814@2|Bacteria,1MX2P@1224|Proteobacteria,2VIIJ@28216|Betaproteobacteria,4A9MC@80864|Comamonadaceae 28216|Betaproteobacteria EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_6743147_4 1245471.PCA10_38650 6.957e-95 315.0 COG0500@1|root,COG0500@2|Bacteria,1R5D7@1224|Proteobacteria,1T1HU@1236|Gammaproteobacteria,1YKMG@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_23,Methyltransf_25 EH3_k127_6743147_1 395495.Lcho_1925 1.09e-175 569.0 COG2918@1|root,COG2918@2|Bacteria,1MW9B@1224|Proteobacteria,2VKVU@28216|Betaproteobacteria,1KK05@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily gshA - 6.3.2.2 ko:K01919 ko00270,ko00480,ko01100,map00270,map00480,map01100 M00118 R00894,R10993 RC00064,RC00090 ko00000,ko00001,ko00002,ko01000 - - - Glu_cys_ligase EH3_k127_6743147_9 709797.CSIRO_2552 1.545e-19 97.0 2BS4F@1|root,32M5C@2|Bacteria,1R6TY@1224|Proteobacteria,2U360@28211|Alphaproteobacteria,3JXG9@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - EH3_k127_6743147_7 765911.Thivi_2924 6.971e-67 233.0 COG0317@1|root,COG0317@2|Bacteria,1RGUA@1224|Proteobacteria,1S3WT@1236|Gammaproteobacteria,1WY7Z@135613|Chromatiales 135613|Chromatiales KT HD domain - - 2.7.6.5,3.1.7.2 ko:K01139 ko00230,map00230 - R00336,R00429 RC00002,RC00078 ko00000,ko00001,ko01000,ko03009 - - - HD_4 EH3_k127_6743147_5 983917.RGE_36130 5.233e-83 296.0 COG0300@1|root,COG0300@2|Bacteria,1RG9T@1224|Proteobacteria,2VSZI@28216|Betaproteobacteria,1KMJD@119065|unclassified Burkholderiales 28216|Betaproteobacteria S KR domain - - - ko:K07124 - - - - ko00000 - - - adh_short EH3_k127_6743147_10 1232410.KI421424_gene1819 1.235e-18 91.0 2E9MH@1|root,333U5@2|Bacteria,1NDRZ@1224|Proteobacteria,42VYW@68525|delta/epsilon subdivisions,2WR91@28221|Deltaproteobacteria,43VTK@69541|Desulfuromonadales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - EH3_k127_6743147_3 357808.RoseRS_2456 5.963e-126 419.0 COG1020@1|root,COG1020@2|Bacteria 2|Bacteria Q D-alanine [D-alanyl carrier protein] ligase activity - - 2.3.1.20 ko:K00635 ko00561,ko01100,map00561,map01100 M00089 R02251 RC00004,RC00041 ko00000,ko00001,ko00002,ko01000 - - - DUF1298,WES_acyltransf EH3_k127_6743147_6 1100720.ALKN01000028_gene2636 3.264e-71 257.0 COG0697@1|root,COG0697@2|Bacteria,1PB22@1224|Proteobacteria,2VYG5@28216|Betaproteobacteria,4AHYC@80864|Comamonadaceae 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_6752517_0 795666.MW7_3245 1.33e-126 412.0 COG0305@1|root,COG0305@2|Bacteria,1MUG9@1224|Proteobacteria,2VIKN@28216|Betaproteobacteria,1K18Q@119060|Burkholderiaceae 28216|Betaproteobacteria L it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins dnaB - 3.6.4.12 ko:K02314 ko03030,ko04112,map03030,map04112 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB,DnaB_C EH3_k127_6752517_1 864073.HFRIS_007309 7.77e-61 214.0 COG0359@1|root,COG0359@2|Bacteria,1RD0R@1224|Proteobacteria,2VR40@28216|Betaproteobacteria,4746U@75682|Oxalobacteraceae 28216|Betaproteobacteria J binds to the 23S rRNA rplI - - ko:K02939 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L9_C,Ribosomal_L9_N EH3_k127_6752517_2 742823.HMPREF9465_00360 2.004e-35 136.0 COG0238@1|root,COG0238@2|Bacteria,1MZ8U@1224|Proteobacteria,2VTWT@28216|Betaproteobacteria,4PR55@995019|Sutterellaceae 28216|Betaproteobacteria J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit rpsR - - ko:K02963 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S18 EH3_k127_6752517_3 1401065.HMPREF2130_09215 2.416e-17 85.0 COG2965@1|root,COG2965@2|Bacteria,1N98W@1224|Proteobacteria,2VVZ4@28216|Betaproteobacteria,3T4QV@506|Alcaligenaceae 28216|Betaproteobacteria L Binds single-stranded DNA at the primosome assembly site (PAS) priB - - ko:K02686 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - SSB EH3_k127_6769431_3 1123367.C666_16400 5.023e-18 83.0 COG0600@1|root,COG0600@2|Bacteria,1MU6Q@1224|Proteobacteria,2VH12@28216|Betaproteobacteria,2KV7F@206389|Rhodocyclales 206389|Rhodocyclales P COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component nasE - - ko:K15577 ko00910,ko02010,map00910,map02010 M00438 - - ko00000,ko00001,ko00002,ko02000 3.A.1.16.1,3.A.1.16.2 - - BPD_transp_1 EH3_k127_6769431_1 1000565.METUNv1_00282 7.193e-136 438.0 COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2VJXH@28216|Betaproteobacteria,2KU9N@206389|Rhodocyclales 206389|Rhodocyclales P COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component nasD - - ko:K15578 ko00910,ko02010,map00910,map02010 M00438 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.16.1 - - ABC_tran EH3_k127_6769431_0 305700.B447_16637 1.835e-222 704.0 COG0515@1|root,COG0631@1|root,COG0515@2|Bacteria,COG0631@2|Bacteria,1MV1P@1224|Proteobacteria,2VH5K@28216|Betaproteobacteria,2KV8U@206389|Rhodocyclales 206389|Rhodocyclales KLT Serine/threonine phosphatases, family 2C, catalytic domain - - 3.1.3.16 ko:K01090 - - - - ko00000,ko01000 - - - PP2C_2,Pkinase EH3_k127_6769431_2 85643.Tmz1t_1145 1.567e-18 85.0 COG2223@1|root,COG2223@2|Bacteria,1MU27@1224|Proteobacteria,2VI6Q@28216|Betaproteobacteria,2KUW4@206389|Rhodocyclales 206389|Rhodocyclales P MFS/sugar transport protein narK - - ko:K02575 ko00910,map00910 M00615 - - ko00000,ko00001,ko00002,ko02000 2.A.1.8 - - MFS_1 EH3_k127_6792405_4 1454004.AW11_00535 8.082e-21 103.0 COG2267@1|root,COG2267@2|Bacteria,1QTZP@1224|Proteobacteria,2VKTF@28216|Betaproteobacteria 28216|Betaproteobacteria I Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_6,Hydrolase_4 EH3_k127_6792405_1 296591.Bpro_3401 5.148e-183 580.0 COG0477@1|root,COG2814@2|Bacteria,1MX2P@1224|Proteobacteria,2VIIJ@28216|Betaproteobacteria,4A9MC@80864|Comamonadaceae 28216|Betaproteobacteria EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 EH3_k127_6792405_0 536019.Mesop_2285 2.383e-295 917.0 COG4870@1|root,COG4870@2|Bacteria,1QUY9@1224|Proteobacteria,2US8N@28211|Alphaproteobacteria 28211|Alphaproteobacteria O Belongs to the peptidase C1 family - - - - - - - - - - - - - EH3_k127_6792405_2 861299.J421_4481 4.172e-95 319.0 COG0501@1|root,COG0501@2|Bacteria,1ZSNK@142182|Gemmatimonadetes 142182|Gemmatimonadetes O Peptidase family M48 htpX - - ko:K03799 - M00743 - - ko00000,ko00002,ko01000,ko01002 - - - Peptidase_M48 EH3_k127_6796610_1 1003200.AXXA_09753 5.191e-52 188.0 COG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,2VRDN@28216|Betaproteobacteria,3T3QT@506|Alcaligenaceae 28216|Betaproteobacteria F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate aroK - 2.7.1.71 ko:K00891 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - SKI EH3_k127_6796610_0 381666.H16_A3434 1.157e-115 385.0 COG0337@1|root,COG0337@2|Bacteria,1MUBK@1224|Proteobacteria,2VHXR@28216|Betaproteobacteria,1K17C@119060|Burkholderiaceae 28216|Betaproteobacteria E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) aroB - 2.7.1.71,4.2.3.4 ko:K01735,ko:K13829 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412,R03083 RC00002,RC00078,RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase,SKI EH3_k127_6796610_2 1217718.ALOU01000064_gene2016 7.373e-27 118.0 COG0232@1|root,COG0232@2|Bacteria,1MVQ2@1224|Proteobacteria,2VI7B@28216|Betaproteobacteria,1K15K@119060|Burkholderiaceae 28216|Betaproteobacteria F Belongs to the dGTPase family. Type 2 subfamily dgt - 3.1.5.1 ko:K01129 ko00230,map00230 - R01856 RC00017 ko00000,ko00001,ko01000 - - - HD,HD_assoc EH3_k127_6804335_3 379066.GAU_0983 7.946e-14 79.0 COG2261@1|root,COG2261@2|Bacteria,1ZU62@142182|Gemmatimonadetes 142182|Gemmatimonadetes S Transglycosylase associated protein - - - - - - - - - - - - Transgly_assoc EH3_k127_6804335_1 1485544.JQKP01000004_gene537 2.546e-92 319.0 COG3202@1|root,COG3202@2|Bacteria,1MVP5@1224|Proteobacteria,2VMB7@28216|Betaproteobacteria 28216|Betaproteobacteria C Major Facilitator - - - ko:K03301 - - - - ko00000 2.A.12 - - MFS_1,TLC EH3_k127_6804335_0 392500.Swoo_3757 7.981e-125 440.0 COG0834@1|root,COG1301@1|root,COG0834@2|Bacteria,COG1301@2|Bacteria,1P22C@1224|Proteobacteria,1RSGY@1236|Gammaproteobacteria,2QB6Y@267890|Shewanellaceae 1236|Gammaproteobacteria CET Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - ko:K02030 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - SBP_bac_3,SDF EH3_k127_6804335_2 690850.Desaf_0478 8.399e-66 243.0 COG0574@1|root,COG0574@2|Bacteria,1P35R@1224|Proteobacteria,42UE9@68525|delta/epsilon subdivisions,2WR5R@28221|Deltaproteobacteria 28221|Deltaproteobacteria G Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - - - - - - - - - - PPDK_N EH3_k127_6811646_1 395495.Lcho_4133 6.311e-75 265.0 COG0760@1|root,COG0760@2|Bacteria,1RGNX@1224|Proteobacteria,2VRQU@28216|Betaproteobacteria,1KNFK@119065|unclassified Burkholderiales 28216|Betaproteobacteria M SurA N-terminal domain - - - - - - - - - - - - Rotamase_2,SurA_N_3 EH3_k127_6811646_2 748247.AZKH_0347 4.454e-73 260.0 COG3303@1|root,COG3303@2|Bacteria,1RG2D@1224|Proteobacteria,2VRXP@28216|Betaproteobacteria 28216|Betaproteobacteria P Doubled CXXCH motif (Paired_CXXCH_1) - - - - - - - - - - - - Paired_CXXCH_1 EH3_k127_6811646_0 395495.Lcho_4135 5.308e-175 555.0 COG3391@1|root,COG3391@2|Bacteria,1NT97@1224|Proteobacteria,2VNUX@28216|Betaproteobacteria,1KNES@119065|unclassified Burkholderiales 28216|Betaproteobacteria S NHL repeat - - - - - - - - - - - - NHL EH3_k127_6811646_3 864051.BurJ1DRAFT_4159 7.214e-26 113.0 COG3245@1|root,COG3245@2|Bacteria,1MZBZ@1224|Proteobacteria,2VSPR@28216|Betaproteobacteria,1KMNZ@119065|unclassified Burkholderiales 28216|Betaproteobacteria C Cytochrome C oxidase, cbb3-type, subunit III nosC - - - - - - - - - - - Cytochrome_CBB3 EH3_k127_6811646_4 395495.Lcho_4136 4.739e-15 80.0 COG2010@1|root,COG2010@2|Bacteria,1R6Z0@1224|Proteobacteria,2VRTH@28216|Betaproteobacteria,1KNJH@119065|unclassified Burkholderiales 28216|Betaproteobacteria C Cytochrome C oxidase, cbb3-type, subunit III - - - ko:K00406 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrome_CBB3,DUF302 EH3_k127_6811673_0 1000565.METUNv1_01946 5.859e-165 524.0 COG0232@1|root,COG0232@2|Bacteria,1MVQ2@1224|Proteobacteria,2VI7B@28216|Betaproteobacteria,2KVNM@206389|Rhodocyclales 206389|Rhodocyclales F Belongs to the dGTPase family. Type 2 subfamily dgt1 - 3.1.5.1 ko:K01129 ko00230,map00230 - R01856 RC00017 ko00000,ko00001,ko01000 - - - HD,HD_assoc EH3_k127_6811673_3 420662.Mpe_B0056 1.582e-41 160.0 COG3108@1|root,COG3108@2|Bacteria,1MWW2@1224|Proteobacteria,2VRCS@28216|Betaproteobacteria,1KMDI@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Bacterial protein of unknown function (DUF882) - - - - - - - - - - - - Peptidase_M15_2 EH3_k127_6811673_2 596154.Alide2_0809 2.567e-82 279.0 COG1943@1|root,COG1943@2|Bacteria,1P19I@1224|Proteobacteria,2VKZ3@28216|Betaproteobacteria,4AB1D@80864|Comamonadaceae 28216|Betaproteobacteria L Transposase IS200 like - - - ko:K07491 - - - - ko00000 - - - Y1_Tnp EH3_k127_6811673_1 1218084.BBJK01000103_gene6447 3.733e-115 375.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,2VHUY@28216|Betaproteobacteria,1K0VQ@119060|Burkholderiaceae 28216|Betaproteobacteria E glutamate synthase gltB - 1.4.1.13,1.4.1.14,1.4.7.1 ko:K00265,ko:K00284 ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230 - R00021,R00093,R00114,R00248,R10086 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase EH3_k127_6812909_3 296591.Bpro_0394 1.518e-29 117.0 COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,2VHAW@28216|Betaproteobacteria,4ABEZ@80864|Comamonadaceae 28216|Betaproteobacteria I 6-phosphogluconate dehydrogenase, NAD-binding glxR GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 ko:K00020,ko:K00042 ko00280,ko00630,ko01100,map00280,map00630,map01100 - R01745,R01747,R05066 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 EH3_k127_6812909_1 1265502.KB905972_gene1336 1.372e-137 449.0 COG0535@1|root,COG0535@2|Bacteria,1MU07@1224|Proteobacteria,2VKSA@28216|Betaproteobacteria,4AANE@80864|Comamonadaceae 28216|Betaproteobacteria S Protein of unknown function (DUF3641) - - - - - - - - - - - - DUF3641,Fer4_12,Radical_SAM EH3_k127_6812909_0 522306.CAP2UW1_2826 3.836e-318 990.0 COG0398@1|root,COG1249@1|root,COG0398@2|Bacteria,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2VH3T@28216|Betaproteobacteria,1KQAC@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria C SNARE associated Golgi protein merA - - - - - - - - - - - Pyr_redox_2,Pyr_redox_dim,SNARE_assoc EH3_k127_6812909_2 1437824.BN940_00996 6.909e-136 462.0 COG0579@1|root,COG0579@2|Bacteria,1N0QB@1224|Proteobacteria,2VIKG@28216|Betaproteobacteria,3T20H@506|Alcaligenaceae 28216|Betaproteobacteria S Oxidoreductase - - - - - - - - - - - - DAO EH3_k127_6812909_4 420662.Mpe_A0144 0.0001317 53.0 COG0702@1|root,COG0702@2|Bacteria,1RA22@1224|Proteobacteria,2VS8D@28216|Betaproteobacteria,1KNRT@119065|unclassified Burkholderiales 28216|Betaproteobacteria GM epimerase - - - - - - - - - - - - - EH3_k127_6818347_1 420662.Mpe_A0149 2.988e-133 430.0 COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,2VH29@28216|Betaproteobacteria,1KJJM@119065|unclassified Burkholderiales 28216|Betaproteobacteria S ABC transporter lptB - - ko:K06861 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko01000,ko02000 1.B.42.1 - - ABC_tran,BCA_ABC_TP_C EH3_k127_6818347_0 987059.RBXJA2T_13259 1.977e-232 730.0 COG1508@1|root,COG1508@2|Bacteria,1MW4V@1224|Proteobacteria,2VIEV@28216|Betaproteobacteria,1KJHW@119065|unclassified Burkholderiales 28216|Betaproteobacteria K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released rpoN - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD EH3_k127_6818347_2 987059.RBXJA2T_13264 9.77e-82 280.0 COG0116@1|root,COG0116@2|Bacteria,1MUQM@1224|Proteobacteria,2VHMY@28216|Betaproteobacteria,1KIVB@119065|unclassified Burkholderiales 28216|Betaproteobacteria L Belongs to the methyltransferase superfamily rlmL - - ko:K07444 - - - - ko00000,ko01000 - - - THUMP,UPF0020 EH3_k127_6855554_2 1205680.CAKO01000040_gene773 1.722e-159 509.0 COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TT26@28211|Alphaproteobacteria,2JPYZ@204441|Rhodospirillales 204441|Rhodospirillales E Belongs to the binding-protein-dependent transport system permease family - - - - - - - - - - - - BPD_transp_2 EH3_k127_6855554_3 1286631.X805_33600 5.626e-143 461.0 COG0559@1|root,COG0559@2|Bacteria,1N54M@1224|Proteobacteria,2VIID@28216|Betaproteobacteria,1KJQG@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Belongs to the binding-protein-dependent transport system permease family - - - ko:K01997 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_6855554_4 688245.CtCNB1_4325 4.056e-132 430.0 COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2VJ0Q@28216|Betaproteobacteria,4A9RD@80864|Comamonadaceae 28216|Betaproteobacteria E PFAM ABC transporter related - - - ko:K01995 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C EH3_k127_6855554_0 762376.AXYL_06189 1.002e-296 923.0 COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2VI0U@28216|Betaproteobacteria,3T1XK@506|Alcaligenaceae 28216|Betaproteobacteria I Long-chain acyl-CoA synthetases (AMP-forming) - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding EH3_k127_6855554_6 640081.Dsui_1107 4.121e-86 293.0 COG0664@1|root,COG0664@2|Bacteria,1MUHT@1224|Proteobacteria,2VI43@28216|Betaproteobacteria,2KY92@206389|Rhodocyclales 206389|Rhodocyclales K Cyclic nucleotide-monophosphate binding domain - - - - - - - - - - - - HTH_Crp_2,cNMP_binding EH3_k127_6855554_5 75379.Tint_2215 1.662e-108 359.0 COG0656@1|root,COG0656@2|Bacteria,1MUH2@1224|Proteobacteria,2VJNQ@28216|Betaproteobacteria,1KMZ0@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Aldo/keto reductase family - - 1.1.1.21 ko:K00011 ko00040,ko00051,ko00052,ko00561,ko00790,ko01100,map00040,map00051,map00052,map00561,map00790,map01100 - R01036,R01041,R01093,R01095,R01431,R01758,R01759,R01787,R02531,R02577,R04285,R11764 RC00099,RC00108,RC00133,RC00205,RC00670 ko00000,ko00001,ko01000 - - - Aldo_ket_red EH3_k127_6855554_8 926560.KE387026_gene4222 6.491e-57 211.0 29A26@1|root,2ZX3K@2|Bacteria,1WMUP@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus - - - - - - - - - - - - - - - EH3_k127_6855554_1 1007105.PT7_2898 1.294e-181 583.0 COG0477@1|root,COG2814@2|Bacteria,1MXPM@1224|Proteobacteria,2VHXT@28216|Betaproteobacteria,3T1HN@506|Alcaligenaceae 28216|Betaproteobacteria EGP Sugar (and other) transporter - - - - - - - - - - - - MFS_1,Sugar_tr EH3_k127_6855554_7 1207063.P24_16200 1.523e-79 271.0 COG0665@1|root,COG0665@2|Bacteria,1MY0G@1224|Proteobacteria,2TRM2@28211|Alphaproteobacteria,2JPDU@204441|Rhodospirillales 204441|Rhodospirillales E FAD dependent oxidoreductase - - 1.4.99.6 ko:K19746 ko00472,ko01100,map00472,map01100 - R11018 RC00006 ko00000,ko00001,ko01000 - - - DAO EH3_k127_6897000_0 1415780.JPOG01000001_gene1277 5.759e-124 407.0 COG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,1RQJX@1236|Gammaproteobacteria,1XA0C@135614|Xanthomonadales 135614|Xanthomonadales Q Protein of unknown function (DUF1298) - - - - - - - - - - - - DUF1298,WES_acyltransf EH3_k127_6897000_1 196367.JNFG01000020_gene4674 1.538e-98 334.0 COG0596@1|root,COG0596@2|Bacteria,1RB3Q@1224|Proteobacteria,2WEMP@28216|Betaproteobacteria 28216|Betaproteobacteria S alpha/beta hydrolase fold - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 EH3_k127_6897000_2 1123504.JQKD01000016_gene1945 1.01e-52 193.0 COG0702@1|root,COG0702@2|Bacteria,1MZG7@1224|Proteobacteria,2VRAU@28216|Betaproteobacteria,4AE2V@80864|Comamonadaceae 28216|Betaproteobacteria GM Nucleoside-diphosphate-sugar epimerases - - - - - - - - - - - - NAD_binding_10 EH3_k127_6897000_4 402626.Rpic_4648 2.217e-17 91.0 COG0236@1|root,COG0236@2|Bacteria,1NHIC@1224|Proteobacteria,2VWCN@28216|Betaproteobacteria,1KA3Y@119060|Burkholderiaceae 28216|Betaproteobacteria IQ Phosphopantetheine attachment site - - - - - - - - - - - - PP-binding EH3_k127_6897000_3 159087.Daro_2710 3.962e-47 179.0 COG1247@1|root,COG1247@2|Bacteria,1QVS0@1224|Proteobacteria,2W2KH@28216|Betaproteobacteria,2KZQ4@206389|Rhodocyclales 206389|Rhodocyclales M Acetyltransferase (GNAT) domain - - - - - - - - - - - - - EH3_k127_6911575_2 76114.ebA993 8.689e-84 280.0 COG0115@1|root,COG0115@2|Bacteria,1MVB0@1224|Proteobacteria,2VHR7@28216|Betaproteobacteria,2KUZJ@206389|Rhodocyclales 206389|Rhodocyclales E Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family ilvE - 2.6.1.42 ko:K00826 ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R10991 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 EH3_k127_6911575_4 426114.THI_3312 2.53e-21 102.0 COG4391@1|root,COG4391@2|Bacteria,1N7QM@1224|Proteobacteria,2VVV6@28216|Betaproteobacteria,1KMKD@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Zinc-finger domain - - - - - - - - - - - - zf-CHCC EH3_k127_6911575_3 1175306.GWL_01740 3.572e-32 130.0 COG4319@1|root,COG4319@2|Bacteria,1MZK9@1224|Proteobacteria,2VU96@28216|Betaproteobacteria,474IC@75682|Oxalobacteraceae 28216|Betaproteobacteria S Domain of unknown function (DUF4440) - - - - - - - - - - - - SnoaL_3 EH3_k127_6911575_0 1095769.CAHF01000013_gene3322 5.108e-116 382.0 COG0429@1|root,COG0429@2|Bacteria,1MWV1@1224|Proteobacteria,2VHZ1@28216|Betaproteobacteria,473G7@75682|Oxalobacteraceae 28216|Betaproteobacteria S alpha/beta hydrolase fold - - - ko:K07019 - - - - ko00000 - - - Abhydrolase_1 EH3_k127_6911575_1 1207063.P24_10011 1.274e-97 323.0 COG4221@1|root,COG4221@2|Bacteria,1MWXS@1224|Proteobacteria,2TQYY@28211|Alphaproteobacteria,2JRNC@204441|Rhodospirillales 204441|Rhodospirillales S Belongs to the short-chain dehydrogenases reductases (SDR) family - - - - - - - - - - - - adh_short EH3_k127_6913480_2 522306.CAP2UW1_2397 9.493e-26 107.0 28H91@1|root,2Z7KU@2|Bacteria,1R4NB@1224|Proteobacteria,2VS45@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_6913480_0 522306.CAP2UW1_2398 1.815e-121 398.0 COG3568@1|root,COG3568@2|Bacteria,1MVN7@1224|Proteobacteria,2VJYW@28216|Betaproteobacteria,1KQWD@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria L Endonuclease/Exonuclease/phosphatase family - - - - - - - - - - - - Exo_endo_phos EH3_k127_6913480_1 388051.AUFE01000035_gene3981 2.237e-106 361.0 COG1502@1|root,COG1502@2|Bacteria,1MWUW@1224|Proteobacteria,2VI41@28216|Betaproteobacteria,1K1ZM@119060|Burkholderiaceae 28216|Betaproteobacteria I Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol clsB - - ko:K06131 ko00564,ko01100,map00564,map01100 - R07390 RC00017 ko00000,ko00001,ko01000 - - - PLDc_2 EH3_k127_6927498_1 1129794.C427_4367 1.935e-86 291.0 COG1060@1|root,COG1060@2|Bacteria,1N4ZG@1224|Proteobacteria,1SR1B@1236|Gammaproteobacteria 1236|Gammaproteobacteria H Haem-NO-binding - - - - - - - - - - - - HNOB EH3_k127_6927498_6 63737.Npun_R4835 2.025e-25 124.0 COG4191@1|root,COG4191@2|Bacteria,1G1JW@1117|Cyanobacteria,1HKFT@1161|Nostocales 1117|Cyanobacteria T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HNOBA,HisKA EH3_k127_6927498_5 240016.ABIZ01000001_gene5360 2.65e-58 232.0 COG0642@1|root,COG0642@2|Bacteria,COG2205@2|Bacteria,46TGZ@74201|Verrucomicrobia,2IV3X@203494|Verrucomicrobiae 203494|Verrucomicrobiae T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,Response_reg EH3_k127_6927498_2 557598.LHK_00822 3.457e-69 267.0 COG2172@1|root,COG2202@1|root,COG2208@1|root,COG3437@1|root,COG2172@2|Bacteria,COG2202@2|Bacteria,COG2208@2|Bacteria,COG3437@2|Bacteria,1NWNJ@1224|Proteobacteria,2WHQD@28216|Betaproteobacteria 28216|Betaproteobacteria T Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - - - - - - - - - - HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,Response_reg EH3_k127_6927498_0 1254432.SCE1572_48965 9.547e-140 454.0 COG3287@1|root,COG3287@2|Bacteria,1QUQH@1224|Proteobacteria,42Q8C@68525|delta/epsilon subdivisions,2WWR9@28221|Deltaproteobacteria,2YU1Q@29|Myxococcales 28221|Deltaproteobacteria M FIST N domain - - - - - - - - - - - - FIST,FIST_C EH3_k127_6927498_4 522306.CAP2UW1_0986 1.522e-58 234.0 COG0642@1|root,COG0784@1|root,COG2198@1|root,COG2202@1|root,COG0784@2|Bacteria,COG2198@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2VGZQ@28216|Betaproteobacteria 28216|Betaproteobacteria T Histidine kinase bvgS2 - - ko:K14978 ko02020,map02020 M00663 - - ko00000,ko00001,ko00002,ko01001,ko02022 - - - HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,PAS_7,Response_reg EH3_k127_6927498_3 557598.LHK_00822 2.33e-67 263.0 COG2172@1|root,COG2202@1|root,COG2208@1|root,COG3437@1|root,COG2172@2|Bacteria,COG2202@2|Bacteria,COG2208@2|Bacteria,COG3437@2|Bacteria,1NWNJ@1224|Proteobacteria,2WHQD@28216|Betaproteobacteria 28216|Betaproteobacteria T Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - - - - - - - - - - HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,Response_reg EH3_k127_6927498_7 644282.Deba_1290 1.869e-19 96.0 COG0745@1|root,COG0784@1|root,COG2203@1|root,COG5002@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG2203@2|Bacteria,COG5002@2|Bacteria,1NC9X@1224|Proteobacteria,43BU6@68525|delta/epsilon subdivisions,2X756@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - - - - - - - - - - HATPase_c,HisKA,Hpt,PAS,PAS_4,PAS_8,PAS_9,PocR,Response_reg EH3_k127_6932585_0 96561.Dole_2133 4.088e-128 415.0 COG2256@1|root,COG2256@2|Bacteria,1MUVS@1224|Proteobacteria,42M9X@68525|delta/epsilon subdivisions,2WJ7E@28221|Deltaproteobacteria,2MIA5@213118|Desulfobacterales 28221|Deltaproteobacteria L AAA ATPase rarA - - ko:K07478 - - - - ko00000 - - - AAA,AAA_assoc_2,MgsA_C,RuvB_N EH3_k127_6932585_1 1121405.dsmv_0521 1.212e-109 359.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,42MSR@68525|delta/epsilon subdivisions,2WIXG@28221|Deltaproteobacteria,2MIJC@213118|Desulfobacterales 28221|Deltaproteobacteria I Belongs to the thiolase family - - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N EH3_k127_69495_1 1163617.SCD_n01991 1.528e-52 187.0 28PU4@1|root,2ZCF6@2|Bacteria,1RBK2@1224|Proteobacteria,2VQ65@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_69495_0 1163617.SCD_n01433 4.994e-93 313.0 COG0730@1|root,COG0730@2|Bacteria 2|Bacteria S response to heat - - - ko:K07090 - - - - ko00000 - - - TauE EH3_k127_69495_2 330214.NIDE0067 2.457e-37 141.0 COG0053@1|root,COG0053@2|Bacteria 2|Bacteria P Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - - - - - - - - - - - EH3_k127_69495_3 1454004.AW11_03111 5.09e-19 88.0 COG0438@1|root,COG0438@2|Bacteria,1RB3J@1224|Proteobacteria,2VJNY@28216|Betaproteobacteria,1KQSI@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 EH3_k127_6969848_0 864051.BurJ1DRAFT_2804 7.125e-233 724.0 COG1305@1|root,COG4196@1|root,COG1305@2|Bacteria,COG4196@2|Bacteria,1MVAG@1224|Proteobacteria,2VKKZ@28216|Betaproteobacteria,1KJ9V@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Putative amidoligase enzyme (DUF2126) - - - - - - - - - - - - Bact_transglu_N,DUF2126,Transglut_core EH3_k127_6969848_1 1366050.N234_05585 6.613e-107 362.0 COG3484@1|root,COG3484@2|Bacteria,1N057@1224|Proteobacteria,2VHD7@28216|Betaproteobacteria,1K3VC@119060|Burkholderiaceae 28216|Betaproteobacteria O PFAM 20S proteasome, A and B subunits - - - ko:K07395 - - - - ko00000 - - - Proteasome EH3_k127_6969848_2 1349767.GJA_2608 2.489e-56 200.0 COG2307@1|root,COG2307@2|Bacteria,1MVZK@1224|Proteobacteria,2VIB5@28216|Betaproteobacteria,472PB@75682|Oxalobacteraceae 28216|Betaproteobacteria S A predicted alpha-helical domain with a conserved ER motif. - - - - - - - - - - - - Alpha-E EH3_k127_6972500_2 1144342.PMI40_03420 4.849e-05 48.0 COG1309@1|root,COG1309@2|Bacteria,1MVQV@1224|Proteobacteria,2VK6A@28216|Betaproteobacteria,4743P@75682|Oxalobacteraceae 28216|Betaproteobacteria K Bacterial transcriptional repressor C-terminal - - - ko:K09017 - - - - ko00000,ko03000 - - - TetR_C_11,TetR_N EH3_k127_6972500_0 614083.AWQR01000055_gene1969 1.972e-127 424.0 COG0845@1|root,COG0845@2|Bacteria,1MU8D@1224|Proteobacteria,2VH9K@28216|Betaproteobacteria,4A9MA@80864|Comamonadaceae 28216|Betaproteobacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K02005,ko:K13888 - M00709 - - ko00000,ko00002,ko02000 8.A.1 - - HlyD_D23 EH3_k127_6972500_1 795666.MW7_0759 1.594e-49 179.0 COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,2VIKP@28216|Betaproteobacteria,1K47S@119060|Burkholderiaceae 28216|Betaproteobacteria V abc transporter macB - - ko:K02003,ko:K05685 ko02010,map02010 M00258,M00709 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1,3.A.1.122.1,3.A.1.122.12 - - ABC_tran,FtsX,MacB_PCD EH3_k127_7002082_1 1504672.669785943 4.262e-100 328.0 COG0395@1|root,COG0395@2|Bacteria,1MUWS@1224|Proteobacteria,2VICF@28216|Betaproteobacteria,4AAP2@80864|Comamonadaceae 28216|Betaproteobacteria P probably responsible for the translocation of the substrate across the membrane ugpE - - ko:K02026,ko:K05815 ko02010,map02010 M00198,M00207 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1,3.A.1.1.3 - - BPD_transp_1 EH3_k127_7002082_0 1005048.CFU_1202 9.289e-147 473.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VGZM@28216|Betaproteobacteria,476D3@75682|Oxalobacteraceae 28216|Betaproteobacteria E Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system ugpC - 3.6.3.20 ko:K05816,ko:K10111,ko:K10112 ko02010,map02010 M00194,M00196,M00197,M00198,M00200,M00201,M00204,M00206,M00207,M00491,M00602,M00605,M00606 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.1,3.A.1.1.3 - - ABC_tran,TOBE_2 EH3_k127_7002082_2 1235457.C404_18090 9.175e-71 245.0 COG0783@1|root,COG0783@2|Bacteria,1RAC5@1224|Proteobacteria,2VHJI@28216|Betaproteobacteria,1K08S@119060|Burkholderiaceae 28216|Betaproteobacteria P Belongs to the Dps family dps - - ko:K04047 - - - - ko00000,ko03036 - - - Ferritin EH3_k127_7002082_3 93220.LV28_18760 1.768e-55 196.0 COG0583@1|root,COG0583@2|Bacteria,1MVA1@1224|Proteobacteria,2VIBJ@28216|Betaproteobacteria,1JZPC@119060|Burkholderiaceae 28216|Betaproteobacteria K LysR family oxyR - - ko:K04761 ko02026,map02026 - - - ko00000,ko00001,ko03000 - - - HTH_1,LysR_substrate EH3_k127_7010060_3 285535.JOEY01000046_gene2061 2.186e-36 147.0 COG4857@1|root,COG4857@2|Bacteria,2INGW@201174|Actinobacteria 201174|Actinobacteria S Phosphotransferase enzyme family - - 2.7.1.100 ko:K00899 ko00270,ko01100,map00270,map01100 M00034 R04143 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - APH EH3_k127_7010060_0 1144325.PMI22_01341 3.764e-178 574.0 COG0148@1|root,COG0148@2|Bacteria,1MU1N@1224|Proteobacteria,1RNQA@1236|Gammaproteobacteria 1236|Gammaproteobacteria G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - 4.2.1.11 ko:K01689 ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066 M00001,M00002,M00003,M00346,M00394 R00658 RC00349 ko00000,ko00001,ko00002,ko01000,ko03019,ko04147 - - - Enolase_C,Enolase_N EH3_k127_7010060_1 497321.C664_15433 1.839e-100 339.0 2DBUS@1|root,2ZB7H@2|Bacteria,1R4EC@1224|Proteobacteria,2VKTU@28216|Betaproteobacteria,2KW0I@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - EH3_k127_7010060_4 671143.DAMO_1046 1.884e-31 132.0 COG4747@1|root,COG4747@2|Bacteria,2NR4R@2323|unclassified Bacteria 2|Bacteria S ACT domain protein hom - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 ko:K00003,ko:K00058,ko:K01754,ko:K04767 ko00260,ko00270,ko00290,ko00300,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00270,map00290,map00300,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00017,M00018,M00020,M00570 R00220,R00996,R01513,R01773,R01775 RC00031,RC00087,RC00418,RC02600 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C,ACT,CBS,Homoserine_dh,Lactamase_B,NAD_binding_3 EH3_k127_7010060_2 1123487.KB892842_gene4174 3.85e-94 313.0 COG4887@1|root,COG4887@2|Bacteria,1RKM1@1224|Proteobacteria 1224|Proteobacteria S Protein of unknown function (DUF1847) - - - - - - - - - - - - DUF1847 EH3_k127_7039043_1 397945.Aave_2464 6.942e-95 316.0 COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2VI6G@28216|Betaproteobacteria,4AAQ4@80864|Comamonadaceae 28216|Betaproteobacteria C pyridine nucleotide-disulphide oxidoreductase dimerisation region lpdA - 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Biotin_lipoyl,Pyr_redox_2,Pyr_redox_dim EH3_k127_7039043_0 864051.BurJ1DRAFT_2230 6.158e-148 477.0 COG0508@1|root,COG0508@2|Bacteria,1MU7K@1224|Proteobacteria,2VIHA@28216|Betaproteobacteria,1KJ5J@119065|unclassified Burkholderiales 28216|Betaproteobacteria C The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) aceF - 1.8.1.4,2.3.1.12 ko:K00382,ko:K00627 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R02569,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834,RC02857 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding EH3_k127_7041337_0 640081.Dsui_2770 2.942e-278 865.0 COG4953@1|root,COG4953@2|Bacteria,1MUA9@1224|Proteobacteria,2VMGW@28216|Betaproteobacteria,2KVV8@206389|Rhodocyclales 206389|Rhodocyclales M Transglycosylase - - 2.4.1.129 ko:K05367 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - BiPBP_C,Transgly,Transpeptidase EH3_k127_7042258_3 1123487.KB892857_gene2521 1.107e-43 164.0 COG0127@1|root,COG0127@2|Bacteria,1MUK5@1224|Proteobacteria,2VQ1Z@28216|Betaproteobacteria,2KVRN@206389|Rhodocyclales 206389|Rhodocyclales F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions - - 3.6.1.66 ko:K02428 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000 - - - Ham1p_like EH3_k127_7042258_0 1286631.X805_31340 2.021e-93 327.0 COG0689@1|root,COG0689@2|Bacteria,1MVFZ@1224|Proteobacteria,2VIGI@28216|Betaproteobacteria,1KJ3P@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates rph - 2.7.7.56 ko:K00989 - - - - ko00000,ko01000,ko03016 - - - RNase_PH,RNase_PH_C EH3_k127_7042258_1 204773.HEAR2127 5.25e-91 310.0 COG0631@1|root,COG0631@2|Bacteria,1MVE7@1224|Proteobacteria,2VIAV@28216|Betaproteobacteria,472AZ@75682|Oxalobacteraceae 28216|Betaproteobacteria T Serine/threonine phosphatases, family 2C, catalytic domain pphA - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C,PP2C_2 EH3_k127_7042258_2 1095769.CAHF01000010_gene1284 2.599e-66 230.0 COG0515@1|root,COG0515@2|Bacteria,1PJRR@1224|Proteobacteria,2VHMW@28216|Betaproteobacteria,473V0@75682|Oxalobacteraceae 28216|Betaproteobacteria KLT Protein tyrosine kinase spkD - - - - - - - - - - - Pkinase EH3_k127_7066837_2 1054213.HMPREF9946_05120 2.264e-08 59.0 COG0687@1|root,COG0687@2|Bacteria,1MU0I@1224|Proteobacteria,2TRJ3@28211|Alphaproteobacteria,2JPDW@204441|Rhodospirillales 204441|Rhodospirillales E Bacterial extracellular solute-binding protein - - - ko:K02055 ko02024,map02024 M00193 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11 - - SBP_bac_8 EH3_k127_7066837_0 379731.PST_0736 3.034e-118 392.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,1RNPX@1236|Gammaproteobacteria,1Z1JH@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria E Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system potA5 - - ko:K02052,ko:K11076 ko02010,ko02024,map02010,map02024 M00193,M00300 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11,3.A.1.11.2 - iJN746.PP_0411 ABC_tran,TOBE_2 EH3_k127_7066837_1 1380394.JADL01000008_gene3549 1.831e-45 168.0 COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,2JPGU@204441|Rhodospirillales 204441|Rhodospirillales H Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - 2.6.1.96 ko:K16871 ko00250,ko00650,ko01100,ko01120,map00250,map00650,map01100,map01120 M00027 R10178 RC00008,RC00062 ko00000,ko00001,ko00002,ko01000 - - - Aminotran_3 EH3_k127_7093091_4 1203554.HMPREF1476_02118 9.149e-34 133.0 COG2197@1|root,COG2197@2|Bacteria,1R2TM@1224|Proteobacteria,2VS9J@28216|Betaproteobacteria,4PR5X@995019|Sutterellaceae 28216|Betaproteobacteria K Bacterial regulatory proteins, luxR family - - - - - - - - - - - - GerE,Response_reg EH3_k127_7093091_2 1157708.KB907477_gene1061 1.958e-78 287.0 COG4585@1|root,COG4585@2|Bacteria,1QUYA@1224|Proteobacteria,2WHKF@28216|Betaproteobacteria,4AJZ5@80864|Comamonadaceae 28216|Betaproteobacteria T Histidine kinase-like ATPases - - - - - - - - - - - - HisKA_3 EH3_k127_7093091_0 1071679.BG57_14105 1.251e-106 357.0 COG1801@1|root,COG1801@2|Bacteria,1MXIQ@1224|Proteobacteria,2VJWC@28216|Betaproteobacteria,1JZY5@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 EH3_k127_7093091_1 404589.Anae109_0029 1.482e-104 355.0 COG3202@1|root,COG3202@2|Bacteria,1MVP5@1224|Proteobacteria,42MNS@68525|delta/epsilon subdivisions,2WSQX@28221|Deltaproteobacteria 28221|Deltaproteobacteria C ATP ADP translocase - - - ko:K03301 - - - - ko00000 2.A.12 - - MFS_1,TLC EH3_k127_7093091_3 375286.mma_2839 2.239e-39 149.0 COG0225@1|root,COG0225@2|Bacteria,1MVUS@1224|Proteobacteria,2VR6F@28216|Betaproteobacteria,4734R@75682|Oxalobacteraceae 28216|Betaproteobacteria O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine msrA - 1.8.4.11 ko:K07304 - - - - ko00000,ko01000 - - - PMSR EH3_k127_7130274_0 582744.Msip34_1194 3.719e-131 420.0 COG0172@1|root,COG0172@2|Bacteria,1MUJF@1224|Proteobacteria,2VHJJ@28216|Betaproteobacteria,2KKNN@206350|Nitrosomonadales 206350|Nitrosomonadales J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b EH3_k127_7130274_1 365046.Rta_17120 6.881e-60 226.0 COG3971@1|root,COG3971@2|Bacteria,1RGHI@1224|Proteobacteria,2VRTF@28216|Betaproteobacteria,4AE62@80864|Comamonadaceae 28216|Betaproteobacteria Q 2-Keto-4-pentenoate hydratase - - - - - - - - - - - - FAA_hydrolase EH3_k127_7172195_1 391038.Bphy_4381 6.906e-143 456.0 COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,2VJM1@28216|Betaproteobacteria,1K0DR@119060|Burkholderiaceae 28216|Betaproteobacteria F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine purF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_6,GATase_7,Pribosyltran EH3_k127_7172195_3 469610.HMPREF0189_00756 2.302e-25 111.0 COG1286@1|root,COG1286@2|Bacteria,1NF4G@1224|Proteobacteria,2VUM6@28216|Betaproteobacteria 28216|Betaproteobacteria S colicin v production cvpA - - ko:K03558 - - - - ko00000 - - - Colicin_V EH3_k127_7172195_4 76114.ebA4781 1.07e-18 94.0 COG3087@1|root,COG3087@2|Bacteria,1QVC5@1224|Proteobacteria,2WGPN@28216|Betaproteobacteria,2KZVW@206389|Rhodocyclales 206389|Rhodocyclales D Sporulation related domain - - - ko:K03749 - - - - ko00000 - - - SPOR EH3_k127_7172195_0 1392838.AWNM01000090_gene3736 8.214e-178 570.0 COG0285@1|root,COG0285@2|Bacteria,1MVCH@1224|Proteobacteria,2VI0H@28216|Betaproteobacteria,3T1IK@506|Alcaligenaceae 28216|Betaproteobacteria H Belongs to the folylpolyglutamate synthase family folC - 6.3.2.12,6.3.2.17 ko:K11754 ko00790,ko01100,map00790,map01100 M00126,M00841 R00942,R02237,R04241 RC00064,RC00090,RC00162 ko00000,ko00001,ko00002,ko01000 - - - Mur_ligase_C,Mur_ligase_M EH3_k127_7172195_2 266265.Bxe_B2878 5.054e-134 429.0 COG0777@1|root,COG0777@2|Bacteria,1MW8G@1224|Proteobacteria,2VHEQ@28216|Betaproteobacteria,1K1C4@119060|Burkholderiaceae 28216|Betaproteobacteria I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA accD - 2.1.3.15,6.4.1.2 ko:K01963 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans EH3_k127_7175679_2 266264.Rmet_1136 5.34e-82 276.0 COG0204@1|root,COG0204@2|Bacteria,1MWDY@1224|Proteobacteria,2VJ4I@28216|Betaproteobacteria,1K1BW@119060|Burkholderiaceae 28216|Betaproteobacteria I Glycerol acyltransferase aas - 2.3.1.40,6.2.1.20 ko:K05939 ko00071,ko00564,map00071,map00564 - R01406,R04864 RC00014,RC00039,RC00041 ko00000,ko00001,ko01000 - - - Acyltransferase,MFS_1 EH3_k127_7175679_0 1218076.BAYB01000008_gene1469 5.271e-276 864.0 COG0365@1|root,COG0365@2|Bacteria,1MUX7@1224|Proteobacteria,2VKAN@28216|Betaproteobacteria,1K44Y@119060|Burkholderiaceae 28216|Betaproteobacteria I synthetase - - 6.2.1.16 ko:K01907 ko00280,ko00650,map00280,map00650 - R01357 RC00004,RC00014 ko00000,ko00001,ko01000,ko01004 - - - ACAS_N,AMP-binding,AMP-binding_C EH3_k127_7175679_3 485915.Dret_0004 2.058e-13 75.0 COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,42M8S@68525|delta/epsilon subdivisions,2WNG8@28221|Deltaproteobacteria,2M818@213115|Desulfovibrionales 28221|Deltaproteobacteria K Belongs to the ParB family parB - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc EH3_k127_7175679_1 983917.RGE_06000 3.279e-192 607.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VI0I@28216|Betaproteobacteria,1KJIN@119065|unclassified Burkholderiales 28216|Betaproteobacteria IQ AMP-binding enzyme C-terminal domain - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C EH3_k127_7199622_3 296591.Bpro_4054 5.057e-35 136.0 COG1703@1|root,COG1884@1|root,COG2185@1|root,COG1703@2|Bacteria,COG1884@2|Bacteria,COG2185@2|Bacteria,1MUXX@1224|Proteobacteria,2VH05@28216|Betaproteobacteria,4AC69@80864|Comamonadaceae 28216|Betaproteobacteria EI Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly icmF GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 ko:K11942 - - - - ko00000,ko01000 - - - ArgK,B12-binding,MM_CoA_mutase EH3_k127_7199622_0 757424.Hsero_4799 6.174e-72 253.0 COG0583@1|root,COG0583@2|Bacteria,1MV0E@1224|Proteobacteria,2VM44@28216|Betaproteobacteria,475XE@75682|Oxalobacteraceae 28216|Betaproteobacteria K Bacterial regulatory helix-turn-helix protein, lysR family - - - - - - - - - - - - HTH_1,LysR_substrate EH3_k127_7199622_1 1123368.AUIS01000006_gene572 1.932e-51 190.0 COG2135@1|root,COG2135@2|Bacteria,1RER4@1224|Proteobacteria,1RSBH@1236|Gammaproteobacteria,2NCEE@225057|Acidithiobacillales 225057|Acidithiobacillales S SOS response associated peptidase (SRAP) - - - - - - - - - - - - SRAP EH3_k127_7199622_2 640081.Dsui_0798 2.747e-46 171.0 COG0288@1|root,COG0288@2|Bacteria,1NGFN@1224|Proteobacteria,2VIBS@28216|Betaproteobacteria,2KUSB@206389|Rhodocyclales 206389|Rhodocyclales P Reversible hydration of carbon dioxide - - 4.2.1.1 ko:K01673 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Pro_CA EH3_k127_72002_7 935863.AWZR01000012_gene2540 1.041e-05 57.0 COG1266@1|root,COG1266@2|Bacteria,1R5V2@1224|Proteobacteria,1S57F@1236|Gammaproteobacteria 1236|Gammaproteobacteria S CAAX protease self-immunity - - - ko:K07052 - - - - ko00000 - - - Abi EH3_k127_72002_3 1144319.PMI16_01377 7.245e-73 265.0 COG0307@1|root,COG0307@2|Bacteria,1MUMB@1224|Proteobacteria,2VIU0@28216|Betaproteobacteria,472B4@75682|Oxalobacteraceae 28216|Betaproteobacteria H riboflavin synthase, alpha ribE - 2.5.1.9 ko:K00793 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00066 RC00958,RC00960 ko00000,ko00001,ko00002,ko01000 - - - Lum_binding EH3_k127_72002_1 1286093.C266_03333 2.095e-145 470.0 COG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,1MUWT@1224|Proteobacteria,2VI9P@28216|Betaproteobacteria,1JZMJ@119060|Burkholderiaceae 28216|Betaproteobacteria H Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate ribD - 1.1.1.193,3.5.4.26 ko:K11752 ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024 M00125 R03458,R03459 RC00204,RC00933 ko00000,ko00001,ko00002,ko01000 - - - RibD_C,dCMP_cyt_deam_1 EH3_k127_72002_4 1095769.CAHF01000009_gene1415 1.364e-63 221.0 COG1327@1|root,COG1327@2|Bacteria,1RE7V@1224|Proteobacteria,2VR9P@28216|Betaproteobacteria,47441@75682|Oxalobacteraceae 28216|Betaproteobacteria K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes nrdR - - ko:K07738 - - - - ko00000,ko03000 - - - ATP-cone EH3_k127_72002_0 1122236.KB905142_gene350 3.888e-175 558.0 COG0112@1|root,COG0112@2|Bacteria,1MUIS@1224|Proteobacteria,2VJ4F@28216|Betaproteobacteria,2KKD4@206350|Nitrosomonadales 206350|Nitrosomonadales E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism glyA - 2.1.2.1 ko:K00600 ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523 M00140,M00141,M00346,M00532 R00945,R09099 RC00022,RC00112,RC01583,RC02958 ko00000,ko00001,ko00002,ko01000 - - - SHMT EH3_k127_72002_2 1123392.AQWL01000009_gene1072 3.45e-97 332.0 COG3174@1|root,COG3174@2|Bacteria,1NDBI@1224|Proteobacteria,2VJ4P@28216|Betaproteobacteria,1KSRM@119069|Hydrogenophilales 119069|Hydrogenophilales S Domain of unknown function (DUF4010) - - - - - - - - - - - - DUF4010,MgtC EH3_k127_72002_6 1217718.ALOU01000002_gene4687 2.75e-54 203.0 COG0406@1|root,COG0406@2|Bacteria,1NPC4@1224|Proteobacteria,2VQTE@28216|Betaproteobacteria,1K3KI@119060|Burkholderiaceae 28216|Betaproteobacteria G Phosphoglycerate mutase gpmB - 5.4.2.12 ko:K15634 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000 - - - His_Phos_1 EH3_k127_72002_5 1304883.KI912532_gene203 1.548e-57 202.0 COG1881@1|root,COG1881@2|Bacteria,1N0Y4@1224|Proteobacteria,2VJ4C@28216|Betaproteobacteria,2KUB9@206389|Rhodocyclales 206389|Rhodocyclales S Phospholipid-binding protein - - - ko:K06910 - - - - ko00000 - - - PBP EH3_k127_72367_8 765912.Thimo_1198 5.083e-45 165.0 COG0205@1|root,COG0205@2|Bacteria,1MVN3@1224|Proteobacteria,1RMVY@1236|Gammaproteobacteria,1WWG7@135613|Chromatiales 135613|Chromatiales G Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions pfp - 2.7.1.11,2.7.1.90 ko:K21071 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130 - R00756,R00764,R02073,R03236,R04779 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PFK EH3_k127_72367_0 983917.RGE_36860 4.106e-199 639.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2VHCV@28216|Betaproteobacteria,1KJIQ@119065|unclassified Burkholderiales 28216|Betaproteobacteria E ABC-type dipeptide transport system, periplasmic component - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 EH3_k127_72367_4 381666.H16_A0604 1.319e-92 310.0 COG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,2VINM@28216|Betaproteobacteria,1K2A1@119060|Burkholderiaceae 28216|Betaproteobacteria M Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria kdsB - 2.7.7.38 ko:K00979 ko00540,ko01100,map00540,map01100 M00063 R03351,R11396 RC00152,RC00910 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_3 EH3_k127_72367_10 398578.Daci_3569 1.325e-19 90.0 COG2835@1|root,COG2835@2|Bacteria,1N6Y2@1224|Proteobacteria,2VW58@28216|Betaproteobacteria,4AFCV@80864|Comamonadaceae 28216|Betaproteobacteria S Belongs to the UPF0434 family ycaR - - ko:K09791 - - - - ko00000 - - - Trm112p EH3_k127_72367_5 1500894.JQNN01000001_gene314 6.096e-91 312.0 COG1663@1|root,COG1663@2|Bacteria,1MU8G@1224|Proteobacteria,2VHPG@28216|Betaproteobacteria,472NI@75682|Oxalobacteraceae 28216|Betaproteobacteria F Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) lpxK - 2.7.1.130 ko:K00912 ko00540,ko01100,map00540,map01100 M00060 R04657 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - - LpxK EH3_k127_72367_9 1158292.JPOE01000002_gene2779 5.675e-37 144.0 COG0848@1|root,COG0848@2|Bacteria,1N0ZA@1224|Proteobacteria,2VUF4@28216|Betaproteobacteria,1KM7P@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Biopolymer transport protein ExbD TolR exbD2 - - ko:K03559 - - - - ko00000,ko02000 1.A.30.2.1 - - ExbD EH3_k127_72367_6 522306.CAP2UW1_0390 5.246e-64 228.0 COG0811@1|root,COG0811@2|Bacteria,1QNJ1@1224|Proteobacteria,2VITY@28216|Betaproteobacteria,1KQS6@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria U MotA/TolQ/ExbB proton channel family exbB2 - - ko:K03561 - - - - ko00000,ko02000 1.A.30.2.1 - - MotA_ExbB EH3_k127_72367_1 795666.MW7_2655 1.688e-123 413.0 COG1570@1|root,COG1570@2|Bacteria,1MUA4@1224|Proteobacteria,2VJIC@28216|Betaproteobacteria,1K2RV@119060|Burkholderiaceae 28216|Betaproteobacteria L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseA - 3.1.11.6 ko:K03601 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_L,tRNA_anti_2 EH3_k127_72367_3 420662.Mpe_A2481 1.687e-111 364.0 COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2VI2Y@28216|Betaproteobacteria,1KK0G@119065|unclassified Burkholderiales 28216|Betaproteobacteria C Destroys radicals which are normally produced within the cells and which are toxic to biological systems sodB GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 ko:K03601,ko:K04564 ko03430,ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map03430,map04013,map04068,map04146,map04211,map04212,map04213,map05016 - - - ko00000,ko00001,ko01000,ko03400 - - - Sod_Fe_C,Sod_Fe_N EH3_k127_72367_7 1532557.JL37_03870 7.892e-47 173.0 COG1430@1|root,COG1430@2|Bacteria,1MZBJ@1224|Proteobacteria,2VSCK@28216|Betaproteobacteria,3T4GB@506|Alcaligenaceae 28216|Betaproteobacteria S Uncharacterized ACR, COG1430 - - - ko:K09005 - - - - ko00000 - - - DUF192 EH3_k127_72367_2 1265502.KB905930_gene1477 1.322e-121 394.0 COG0538@1|root,COG0538@2|Bacteria,1MW3J@1224|Proteobacteria,2VHVD@28216|Betaproteobacteria,4ABW5@80864|Comamonadaceae 28216|Betaproteobacteria C TIGRFAM isocitrate dehydrogenase, NADP-dependent icd GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 ko:K00031 ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 M00009,M00010,M00173,M00740 R00267,R00268,R01899 RC00001,RC00084,RC00114,RC00626,RC02801 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh EH3_k127_7255680_2 266264.Rmet_0717 1.336e-16 79.0 COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,2VHFU@28216|Betaproteobacteria,1K0FT@119060|Burkholderiaceae 28216|Betaproteobacteria E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 EH3_k127_7255680_1 469610.HMPREF0189_00480 4.588e-72 255.0 COG0287@1|root,COG0287@2|Bacteria,1QTZA@1224|Proteobacteria,2VIS1@28216|Betaproteobacteria,1KJ5E@119065|unclassified Burkholderiales 28216|Betaproteobacteria E prephenate dehydrogenase tyrA - 1.3.1.12 ko:K04517 ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230 M00025 R01728 RC00125 ko00000,ko00001,ko00002,ko01000 - - - PDH EH3_k127_7255680_0 1434929.X946_2776 1.291e-108 363.0 COG0128@1|root,COG0128@2|Bacteria,1MWMK@1224|Proteobacteria,2VGZF@28216|Betaproteobacteria,1K0P7@119060|Burkholderiaceae 28216|Betaproteobacteria E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate aroA - 2.5.1.19 ko:K00800 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03460 RC00350 ko00000,ko00001,ko00002,ko01000 - - - Cytidylate_kin,EPSP_synthase EH3_k127_7270044_1 1366050.N234_06350 8.013e-29 121.0 COG3064@1|root,COG3064@2|Bacteria,1MXPS@1224|Proteobacteria,2VKTY@28216|Betaproteobacteria,1K11H@119060|Burkholderiaceae 28216|Betaproteobacteria M Protein of unknown function (DUF3300) - - - - - - - - - - - - DUF3300 EH3_k127_7270044_0 1366050.N234_06355 1.352e-105 359.0 COG4786@1|root,COG4786@2|Bacteria,1MZXB@1224|Proteobacteria,2VKSZ@28216|Betaproteobacteria,1K5PF@119060|Burkholderiaceae 28216|Betaproteobacteria N Protein of unknown function (DUF2950) - - - - - - - - - - - - DUF2950 EH3_k127_7270044_2 522306.CAP2UW1_3016 4.386e-15 74.0 COG1027@1|root,COG1027@2|Bacteria,1R9JY@1224|Proteobacteria,2W02M@28216|Betaproteobacteria,1KQIF@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria E Fumarase C C-terminus aspA - 4.3.1.1 ko:K01744 ko00250,ko01100,map00250,map01100 - R00490 RC00316,RC02799 ko00000,ko00001,ko01000 - - - FumaraseC_C,Lyase_1 EH3_k127_7446211_7 251221.35213810 1e-06 62.0 COG1596@1|root,COG1596@2|Bacteria,1G5GH@1117|Cyanobacteria 1117|Cyanobacteria M polysaccharide export protein - - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB EH3_k127_7446211_3 768671.ThimaDRAFT_3239 8.571e-82 300.0 COG2244@1|root,COG2244@2|Bacteria,1PF64@1224|Proteobacteria,1TKCZ@1236|Gammaproteobacteria,1X1Y8@135613|Chromatiales 135613|Chromatiales S polysaccharide biosynthetic process - - - - - - - - - - - - - EH3_k127_7446211_0 768671.ThimaDRAFT_3244 2.753e-133 460.0 COG3534@1|root,COG3534@2|Bacteria 2|Bacteria G alpha-L-arabinofuranosidase - - - - - - - - - - - - Glyco_hydro_43,Laminin_G_3,Ricin_B_lectin EH3_k127_7446211_6 631454.N177_2160 2.256e-41 168.0 COG2227@1|root,COG2227@2|Bacteria,1NBIU@1224|Proteobacteria,2U5KF@28211|Alphaproteobacteria,1JPJW@119043|Rhodobiaceae 28211|Alphaproteobacteria H Methionine biosynthesis protein MetW - - - - - - - - - - - - Methyltransf_23 EH3_k127_7446211_5 243233.MCA1423 6.884e-65 241.0 COG3306@1|root,COG3306@2|Bacteria,1RHP9@1224|Proteobacteria,1SP2H@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Glycosyltransferase family 25 (LPS biosynthesis protein) - - - - - - - - - - - - Glyco_transf_25 EH3_k127_7446211_2 557598.LHK_00834 7.354e-119 409.0 COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,1QY3G@1224|Proteobacteria 1224|Proteobacteria DM protein involved in exopolysaccharide biosynthesis - - - - - - - - - - - - - EH3_k127_7446211_1 195250.CM001776_gene928 1.297e-120 400.0 COG1208@1|root,COG1208@2|Bacteria,1G168@1117|Cyanobacteria,1GYSQ@1129|Synechococcus 1117|Cyanobacteria H Catalyzes the formation of UDP-glucose, from UTP and glucose 1-phosphate cugP GO:0000166,GO:0001882,GO:0001884,GO:0002134,GO:0003674,GO:0003824,GO:0003983,GO:0005488,GO:0006011,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009225,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051748,GO:0055086,GO:0070569,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363 2.7.7.13,5.4.2.8 ko:K00966,ko:K16881 ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130 M00114,M00361,M00362 R00885,R01818 RC00002,RC00408 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transferase EH3_k127_7446211_4 497321.C664_17140 1.141e-68 253.0 COG0642@1|root,COG0642@2|Bacteria,1NXDJ@1224|Proteobacteria,2W1GY@28216|Betaproteobacteria,2KZNW@206389|Rhodocyclales 206389|Rhodocyclales T Histidine Phosphotransfer domain - - - - - - - - - - - - HATPase_c,HisKA,Response_reg EH3_k127_7500107_1 595537.Varpa_2601 2.22e-88 308.0 COG4773@1|root,COG4773@2|Bacteria,1NZCG@1224|Proteobacteria,2VH0X@28216|Betaproteobacteria,4AEMG@80864|Comamonadaceae 28216|Betaproteobacteria P TonB dependent receptor fatA1 - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec EH3_k127_7500107_7 338969.Rfer_3247 1.433e-35 154.0 COG3172@1|root,COG3172@2|Bacteria,1RI98@1224|Proteobacteria,2VSFE@28216|Betaproteobacteria 28216|Betaproteobacteria H AAA domain - - - - - - - - - - - - AAA_28 EH3_k127_7500107_4 1265502.KB905931_gene1664 1.267e-61 219.0 COG3201@1|root,COG3201@2|Bacteria,1MXN4@1224|Proteobacteria,2VRT2@28216|Betaproteobacteria,4AHNG@80864|Comamonadaceae 28216|Betaproteobacteria H Nicotinamide mononucleotide transporter pnuC - - ko:K03811 - - - - ko00000,ko02000 4.B.1.1 - - NMN_transporter EH3_k127_7500107_2 469610.HMPREF0189_01399 1.742e-78 280.0 COG0483@1|root,COG0483@2|Bacteria,1PPJ0@1224|Proteobacteria,2VM5M@28216|Betaproteobacteria 28216|Betaproteobacteria G COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family hisN - 3.1.3.25 ko:K01092 ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070 M00131 R01185,R01186,R01187 RC00078 ko00000,ko00001,ko00002,ko01000 - - - Inositol_P EH3_k127_7500107_8 420662.Mpe_A0549 2.78e-24 108.0 2ETEI@1|root,33KYE@2|Bacteria,1NJKD@1224|Proteobacteria,2W43N@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_7500107_6 987059.RBXJA2T_15263 1.504e-46 194.0 COG3920@1|root,COG3920@2|Bacteria,1NU8D@1224|Proteobacteria,2VNX9@28216|Betaproteobacteria,1KKC6@119065|unclassified Burkholderiales 28216|Betaproteobacteria T Histidine kinase - - - - - - - - - - - - HisKA_2,PAS_4,PAS_8,PAS_9 EH3_k127_7500107_9 1304885.AUEY01000053_gene138 8.243e-15 90.0 COG0642@1|root,COG4251@1|root,COG5002@1|root,COG0642@2|Bacteria,COG4251@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,42NK9@68525|delta/epsilon subdivisions,2WMCQ@28221|Deltaproteobacteria,2MPPV@213118|Desulfobacterales 28221|Deltaproteobacteria T Histidine Phosphotransfer domain - - 2.1.1.80,3.1.1.61 ko:K13924 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - CheB_methylest,CheR,CheR_N,GAF_2,HAMP,HATPase_c,HisKA,Hpt,PAS,PAS_10,PAS_3,PAS_4,PAS_8,PAS_9,Response_reg,dCache_3 EH3_k127_7500107_3 1095769.CAHF01000003_gene1024 1.265e-66 231.0 COG0629@1|root,COG0629@2|Bacteria,1RCWT@1224|Proteobacteria,2VR2Z@28216|Betaproteobacteria,4744R@75682|Oxalobacteraceae 28216|Betaproteobacteria L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism ssb GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - ko:K03111 ko03030,ko03430,ko03440,map03030,map03430,map03440 - - - ko00000,ko00001,ko03029,ko03032,ko03400 - - - SSB EH3_k127_7500107_0 864073.HFRIS_002764 5.743e-132 433.0 COG0477@1|root,COG2814@2|Bacteria,1MVSH@1224|Proteobacteria,2VITN@28216|Betaproteobacteria,473ZV@75682|Oxalobacteraceae 28216|Betaproteobacteria EGP Major facilitator superfamily yajR - - - - - - - - - - - MFS_1,Sugar_tr EH3_k127_7500107_5 228410.NE2455 6.821e-53 187.0 COG0178@1|root,COG0178@2|Bacteria,1MW0W@1224|Proteobacteria,2VIJE@28216|Betaproteobacteria,3726S@32003|Nitrosomonadales 28216|Betaproteobacteria L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran EH3_k127_7546178_6 123899.JPQP01000018_gene247 3.277e-77 261.0 COG0722@1|root,COG0722@2|Bacteria,1MU5Q@1224|Proteobacteria,2VH4W@28216|Betaproteobacteria,3T6JY@506|Alcaligenaceae 28216|Betaproteobacteria E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) aroG - 2.5.1.54 ko:K01626 ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024 M00022 R01826 RC00435 ko00000,ko00001,ko00002,ko01000 - - - DAHP_synth_1 EH3_k127_7546178_3 596151.DesfrDRAFT_3481 2.576e-155 505.0 COG0122@1|root,COG2169@1|root,COG0122@2|Bacteria,COG2169@2|Bacteria,1QTXM@1224|Proteobacteria,42N8C@68525|delta/epsilon subdivisions,2WM3N@28221|Deltaproteobacteria,2M812@213115|Desulfovibrionales 28221|Deltaproteobacteria K AlkA N-terminal domain ada - 3.2.2.21 ko:K13529,ko:K13530 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03000,ko03400 - - - Ada_Zn_binding,AlkA_N,HTH_18,HhH-GPD EH3_k127_7546178_7 1286631.X805_24850 1.195e-45 173.0 COG0350@1|root,COG0350@2|Bacteria,1N2YQ@1224|Proteobacteria,2VIAK@28216|Betaproteobacteria,1KMB3@119065|unclassified Burkholderiales 28216|Betaproteobacteria L Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated ogt - 2.1.1.63 ko:K00567 - - - - ko00000,ko01000,ko03400 - - - DNA_binding_1,Methyltransf_1N EH3_k127_7546178_5 522306.CAP2UW1_1484 8.605e-79 280.0 COG0697@1|root,COG0697@2|Bacteria,1MZQM@1224|Proteobacteria,2VI5H@28216|Betaproteobacteria,1KQSH@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria EG EamA-like transporter family yijE_1 - - - - - - - - - - - EamA EH3_k127_7546178_4 388051.AUFE01000045_gene2354 2.901e-79 283.0 COG2096@1|root,COG2096@2|Bacteria,1RDUF@1224|Proteobacteria,2VQ7P@28216|Betaproteobacteria,1K1TA@119060|Burkholderiaceae 28216|Betaproteobacteria S Adenosyltransferase yvqK GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 ko:K00798 ko00860,ko01100,map00860,map01100 M00122 R01492,R05220,R07268 RC00533 ko00000,ko00001,ko00002,ko01000 - - - Cob_adeno_trans EH3_k127_7546178_1 1235457.C404_18000 5.78e-211 676.0 COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2VI85@28216|Betaproteobacteria,1K241@119060|Burkholderiaceae 28216|Betaproteobacteria C PFAM FAD linked oxidase domain protein dld - 1.1.2.4,1.1.5.12 ko:K00102,ko:K03777 ko00620,ko01120,map00620,map01120 - R00197,R00704,R11591 RC00044 ko00000,ko00001,ko01000 - - - FAD-oxidase_C,FAD_binding_4 EH3_k127_7546178_2 1499502.EV12_0046 1.868e-163 532.0 COG0436@1|root,COG0436@2|Bacteria 2|Bacteria E Aminotransferase asdA - 4.1.1.12 ko:K09758 ko00250,ko00270,ko01100,ko01230,map00250,map00270,map01100,map01230 - R00397,R00863 RC00282,RC00399,RC00400 ko00000,ko00001,ko01000 - - - Aminotran_1_2 EH3_k127_7546178_0 296591.Bpro_0678 1.203e-213 666.0 COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,2VH5H@28216|Betaproteobacteria,4A9PE@80864|Comamonadaceae 28216|Betaproteobacteria P Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity katG - 1.11.1.21 ko:K03782 ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110 - R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906 RC00034,RC00213,RC00767,RC02141 ko00000,ko00001,ko01000 - - - peroxidase EH3_k127_7550616_1 296591.Bpro_4698 2.366e-126 409.0 COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2WFJM@28216|Betaproteobacteria,4AD19@80864|Comamonadaceae 28216|Betaproteobacteria E Glutamine synthetase, catalytic domain - - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C EH3_k127_7550616_3 365046.Rta_31180 8.252e-29 125.0 COG2331@1|root,COG2331@2|Bacteria,1N6Q9@1224|Proteobacteria,2VTX5@28216|Betaproteobacteria,4AEZ5@80864|Comamonadaceae 28216|Betaproteobacteria S Regulatory protein, FmdB family - - - - - - - - - - - - Zn-ribbon_8 EH3_k127_7550616_2 557598.LHK_02449 1.674e-70 245.0 COG2928@1|root,COG2928@2|Bacteria,1MWT5@1224|Proteobacteria,2VH65@28216|Betaproteobacteria,2KQ9Z@206351|Neisseriales 206351|Neisseriales S Protein of unknown function (DUF502) - - - - - - - - - - - - DUF502 EH3_k127_7550616_0 1071679.BG57_21565 3.745e-243 761.0 COG0173@1|root,COG0173@2|Bacteria,1MUXB@1224|Proteobacteria,2VHKQ@28216|Betaproteobacteria,1K0F2@119060|Burkholderiaceae 28216|Betaproteobacteria J Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) aspS - 6.1.1.12 ko:K01876 ko00970,map00970 M00359,M00360 R05577 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - GAD,tRNA-synt_2,tRNA_anti-codon EH3_k127_7587739_1 595537.Varpa_1072 2.058e-81 274.0 COG1176@1|root,COG1176@2|Bacteria,1MU1Y@1224|Proteobacteria,2VK8I@28216|Betaproteobacteria,4AD35@80864|Comamonadaceae 28216|Betaproteobacteria P binding-protein-dependent transport systems inner membrane component - - - ko:K02054 ko02024,map02024 M00193 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11 - - BPD_transp_1 EH3_k127_7587739_0 595537.Varpa_1071 4.117e-111 364.0 COG1177@1|root,COG1177@2|Bacteria,1MUQD@1224|Proteobacteria,2VJ92@28216|Betaproteobacteria,4AD2D@80864|Comamonadaceae 28216|Betaproteobacteria P binding-protein-dependent transport systems inner membrane component potC - - ko:K02053 ko02024,map02024 M00193 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11 - - BPD_transp_1 EH3_k127_7587739_2 391612.CY0110_21340 5.865e-25 107.0 COG2403@1|root,COG2403@2|Bacteria,1G1FF@1117|Cyanobacteria,3KH0Q@43988|Cyanothece 1117|Cyanobacteria S cyclic 2,3-diphosphoglycerate synthetase activity - - - - - - - - - - - - cobW EH3_k127_7600527_0 317936.Nos7107_5389 2.092e-99 332.0 COG0668@1|root,COG0668@2|Bacteria,1G1I3@1117|Cyanobacteria,1HK89@1161|Nostocales 1117|Cyanobacteria M Mechanosensitive ion channel - - - ko:K03442 - - - - ko00000,ko02000 1.A.23.2 - - MS_channel EH3_k127_7600527_1 522306.CAP2UW1_2891 1.42e-71 264.0 COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2VIN1@28216|Betaproteobacteria,1KR64@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria ET PFAM extracellular solute-binding protein family 3 aapJ - - ko:K02030,ko:K09969,ko:K10001 ko02010,ko02020,map02010,map02020 M00230,M00232,M00236 - - ko00000,ko00001,ko00002,ko02000 3.A.1.3,3.A.1.3.18,3.A.1.3.19,3.A.1.3.4,3.A.1.3.7,3.A.1.3.8 - - SBP_bac_3 EH3_k127_7678826_0 1217718.ALOU01000093_gene1791 4.16e-279 863.0 COG1274@1|root,COG1274@2|Bacteria,1MX3C@1224|Proteobacteria,2VINZ@28216|Betaproteobacteria,1JZXA@119060|Burkholderiaceae 28216|Betaproteobacteria H Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle pckG GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 ko:K01596 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko03320,ko04068,ko04151,ko04152,ko04910,ko04920,ko04922,ko04931,ko04964,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map03320,map04068,map04151,map04152,map04910,map04920,map04922,map04931,map04964 M00003 R00431,R00726 RC00002,RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPCK_C,PEPCK_N EH3_k127_77111_2 748247.AZKH_2306 6.238e-16 77.0 COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2VHBI@28216|Betaproteobacteria 28216|Betaproteobacteria I acyl-CoA dehydrogenase - - 1.3.8.7 ko:K00249 ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320 M00013,M00036,M00087 R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754 RC00052,RC00068,RC00076,RC00095,RC00148,RC00246 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N EH3_k127_77111_1 1219045.BV98_003209 4.15e-87 297.0 COG1024@1|root,COG1024@2|Bacteria,1NQM5@1224|Proteobacteria,2TSP1@28211|Alphaproteobacteria 28211|Alphaproteobacteria I Enoyl-CoA hydratase MA20_16935 - 5.3.3.18 ko:K15866 ko00360,ko01120,map00360,map01120 - R09837,R09839 RC00004,RC00326,RC02689,RC03003 ko00000,ko00001,ko01000 - - - ECH_1 EH3_k127_77111_0 1144342.PMI40_04414 4.786e-203 637.0 COG1488@1|root,COG1488@2|Bacteria,1MV8U@1224|Proteobacteria,2VGZ5@28216|Betaproteobacteria,4732W@75682|Oxalobacteraceae 28216|Betaproteobacteria F Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP pncB GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 ko:K00763 ko00760,ko01100,map00760,map01100 - R01724 RC00033 ko00000,ko00001,ko01000 - - - NAPRTase EH3_k127_7718181_1 469610.HMPREF0189_00643 8.068e-206 646.0 COG0481@1|root,COG0481@2|Bacteria,1MVZA@1224|Proteobacteria,2VHM5@28216|Betaproteobacteria,1KJPB@119065|unclassified Burkholderiales 28216|Betaproteobacteria J Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner lepA - - ko:K03596 ko05134,map05134 - - - ko00000,ko00001 - - - EFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C EH3_k127_7718181_2 339670.Bamb_1006 2.105e-172 556.0 COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2VI4Q@28216|Betaproteobacteria,1K1RF@119060|Burkholderiaceae 28216|Betaproteobacteria M Belongs to the peptidase S1C family mucD - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 EH3_k127_7718181_4 1144319.PMI16_03301 4.028e-67 246.0 COG3026@1|root,COG3026@2|Bacteria,1MUQ8@1224|Proteobacteria,2VMZQ@28216|Betaproteobacteria,47245@75682|Oxalobacteraceae 28216|Betaproteobacteria T negative regulator of sigma E activity rseB - - ko:K03598 - - - - ko00000,ko03021 - - - MucB_RseB,MucB_RseB_C EH3_k127_7718181_6 864051.BurJ1DRAFT_4103 2.212e-09 66.0 COG3073@1|root,COG3073@2|Bacteria,1N3E9@1224|Proteobacteria,2VUN0@28216|Betaproteobacteria,1KMA2@119065|unclassified Burkholderiales 28216|Betaproteobacteria T PFAM Anti sigma-E protein RseA - - - ko:K03597 - - - - ko00000,ko03021 - - - RseA_N EH3_k127_7718181_3 1144342.PMI40_01873 6.766e-91 302.0 COG1595@1|root,COG1595@2|Bacteria,1MX7T@1224|Proteobacteria,2VHR2@28216|Betaproteobacteria,4735G@75682|Oxalobacteraceae 28216|Betaproteobacteria K Belongs to the sigma-70 factor family. ECF subfamily rpoE - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 EH3_k127_7718181_0 402626.Rpic_0919 1.096e-209 657.0 COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2VI6I@28216|Betaproteobacteria,1K0WZ@119060|Burkholderiaceae 28216|Betaproteobacteria I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP fabF GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 ko:K00646,ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004,ko01008 - - - Ketoacyl-synt_C,ketoacyl-synt EH3_k127_7718181_5 1123354.AUDR01000020_gene1989 5.336e-35 134.0 COG0236@1|root,COG0236@2|Bacteria,1MZ4P@1224|Proteobacteria,2VTZH@28216|Betaproteobacteria,1KRSK@119069|Hydrogenophilales 119069|Hydrogenophilales IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis acpP - - ko:K02078 - - - - ko00000,ko00001 - - - PP-binding EH3_k127_7727187_3 269799.Gmet_3453 1.483e-05 47.0 COG2391@1|root,COG2391@2|Bacteria,1MXSE@1224|Proteobacteria,42V4B@68525|delta/epsilon subdivisions 1224|Proteobacteria S Sulphur transport soxT - - ko:K07112 - - - - ko00000 - - - Sulf_transp EH3_k127_7727187_2 396588.Tgr7_2590 8.222e-24 102.0 COG0425@1|root,COG2391@1|root,COG0425@2|Bacteria,COG2391@2|Bacteria 2|Bacteria O sulfur carrier activity tusA-2 GO:0008150,GO:0009987,GO:0019725,GO:0042592,GO:0048878,GO:0055082,GO:0065007,GO:0065008 - ko:K04085,ko:K07112 ko04122,map04122 - - - ko00000,ko00001,ko01000,ko03016 - - - HTH_20,HTH_5,Sulf_transp,TusA EH3_k127_7727187_0 396588.Tgr7_2589 7.445e-261 828.0 COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1WVV9@135613|Chromatiales 135613|Chromatiales T Diguanylate cyclase - - - - - - - - - - - - EAL,GAF_2,GGDEF,PAS_9 EH3_k127_7727187_1 1123367.C666_18580 9.677e-53 188.0 COG1430@1|root,COG1430@2|Bacteria,1MZBJ@1224|Proteobacteria,2VSCK@28216|Betaproteobacteria,2KWQ3@206389|Rhodocyclales 206389|Rhodocyclales S Uncharacterized ACR, COG1430 - - - ko:K09005 - - - - ko00000 - - - DUF192 EH3_k127_7730854_3 864051.BurJ1DRAFT_3535 5.886e-83 279.0 COG0265@1|root,COG0265@2|Bacteria,1QWA4@1224|Proteobacteria,2VK6X@28216|Betaproteobacteria,1KKMS@119065|unclassified Burkholderiales 28216|Betaproteobacteria O Trypsin - - - - - - - - - - - - Trypsin_2 EH3_k127_7730854_0 296591.Bpro_3891 2.066e-165 527.0 COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,2VKJJ@28216|Betaproteobacteria,4AD31@80864|Comamonadaceae 28216|Betaproteobacteria S ATPase associated with various cellular activities, AAA_3 - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 EH3_k127_7730854_2 1095769.CAHF01000011_gene2300 1.455e-127 415.0 COG1721@1|root,COG1721@2|Bacteria,1MWPG@1224|Proteobacteria,2W98D@28216|Betaproteobacteria,476N1@75682|Oxalobacteraceae 28216|Betaproteobacteria S von Willebrand factor (vWF) type A domain - - - - - - - - - - - - DUF58 EH3_k127_7730854_1 365044.Pnap_3247 1.297e-139 451.0 COG2304@1|root,COG2304@2|Bacteria,1MXQ7@1224|Proteobacteria,2VHRY@28216|Betaproteobacteria,4ACKS@80864|Comamonadaceae 28216|Betaproteobacteria S von Willebrand factor, type A - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - BatA,VWA,VWA_2 EH3_k127_7730854_4 93220.LV28_15805 1.28e-77 264.0 COG0683@1|root,COG0683@2|Bacteria,1MU8V@1224|Proteobacteria,2VI6J@28216|Betaproteobacteria,1K27G@119060|Burkholderiaceae 28216|Betaproteobacteria E abc transporter urtA - - ko:K11959 ko02010,map02010 M00323 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4.4,3.A.1.4.5 - - Peripla_BP_5 EH3_k127_7750092_0 1304883.KI912532_gene2264 1.337e-147 485.0 COG3276@1|root,COG3276@2|Bacteria,1MWXH@1224|Proteobacteria,2VH0U@28216|Betaproteobacteria,2KXQF@206389|Rhodocyclales 206389|Rhodocyclales J Elongation factor SelB, winged helix - - - ko:K03833 - - - - ko00000,ko03012 - - - GTP_EFTU,GTP_EFTU_D2,SelB-wing_2,SelB-wing_3 EH3_k127_7750092_1 1236541.BALL01000013_gene1994 2.349e-05 56.0 COG3276@1|root,COG3276@2|Bacteria,1MWXH@1224|Proteobacteria,1RQJI@1236|Gammaproteobacteria,2Q8ZI@267890|Shewanellaceae 1236|Gammaproteobacteria J Translation elongation factor selB GO:0000049,GO:0000166,GO:0001514,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016259,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034641,GO:0034645,GO:0035368,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:2000112 - ko:K03833 - - - - ko00000,ko03012 - - - GTP_EFTU,GTP_EFTU_D2,SelB-wing_2,SelB-wing_3 EH3_k127_7755176_0 85643.Tmz1t_4074 2.221e-184 586.0 COG3666@1|root,COG3666@2|Bacteria,1N3QR@1224|Proteobacteria,2VK6J@28216|Betaproteobacteria,2KX2N@206389|Rhodocyclales 206389|Rhodocyclales L COG3666 Transposase and inactivated derivatives - - - - - - - - - - - - DDE_Tnp_1,DDE_Tnp_1_6,DUF772 EH3_k127_7767316_2 1349767.GJA_3780 1.835e-47 173.0 COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2VH3V@28216|Betaproteobacteria,472XU@75682|Oxalobacteraceae 28216|Betaproteobacteria T Putative diguanylate phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,PAS_3,PAS_9 EH3_k127_7767316_0 1304883.KI912532_gene901 1.501e-163 528.0 COG1168@1|root,COG1168@2|Bacteria,1MY33@1224|Proteobacteria,2VHZ6@28216|Betaproteobacteria,2KV85@206389|Rhodocyclales 206389|Rhodocyclales E Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities - - 4.4.1.8 ko:K14155 ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230 - R00782,R01286,R02408,R04941 RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 EH3_k127_7767316_1 159087.Daro_4128 2.08e-149 478.0 COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,2VJI3@28216|Betaproteobacteria,2KVD7@206389|Rhodocyclales 206389|Rhodocyclales E Pyridoxal-phosphate dependent enzyme - - 2.5.1.47 ko:K01738 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03601,R04859 RC00020,RC02814,RC02821 ko00000,ko00001,ko00002,ko01000 - - - PALP EH3_k127_7767316_3 1163617.SCD_n00163 2.656e-47 175.0 COG0666@1|root,COG0666@2|Bacteria,1RHWA@1224|Proteobacteria,2VTHN@28216|Betaproteobacteria 28216|Betaproteobacteria S Ankyrin repeats (many copies) - - - - - - - - - - - - Ank_2,Ank_5 EH3_k127_7776355_3 243365.CV_2979 3.119e-66 229.0 COG1562@1|root,COG1562@2|Bacteria,1N6J2@1224|Proteobacteria,2VIZC@28216|Betaproteobacteria,2KQEW@206351|Neisseriales 206351|Neisseriales I squalene synthase HpnC hpnC - - - - - - - - - - - SQS_PSY EH3_k127_7776355_1 757424.Hsero_2583 3.332e-140 459.0 COG0544@1|root,COG0544@2|Bacteria,1MUJP@1224|Proteobacteria,2VING@28216|Betaproteobacteria,472K7@75682|Oxalobacteraceae 28216|Betaproteobacteria D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase tig GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - ko:K03545 - - - - ko00000 - - - FKBP_C,Trigger_C,Trigger_N EH3_k127_7776355_2 1007105.PT7_0729 1.148e-103 340.0 COG0740@1|root,COG0740@2|Bacteria,1MV46@1224|Proteobacteria,2VHAZ@28216|Betaproteobacteria,3T1MR@506|Alcaligenaceae 28216|Betaproteobacteria O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins clpP - 3.4.21.92 ko:K01358 ko04112,ko04212,map04112,map04212 - - - ko00000,ko00001,ko01000,ko01002 - - - CLP_protease EH3_k127_7776355_0 1000565.METUNv1_00037 3.628e-198 621.0 COG1219@1|root,COG1219@2|Bacteria,1MVQK@1224|Proteobacteria,2VIEU@28216|Betaproteobacteria,2KVAQ@206389|Rhodocyclales 206389|Rhodocyclales O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP clpX - - ko:K03544 ko04112,map04112 - - - ko00000,ko00001,ko03110 - - - AAA_2,ClpB_D2-small,zf-C4_ClpX EH3_k127_7787662_2 472759.Nhal_1247 1.828e-99 338.0 COG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria,1RR36@1236|Gammaproteobacteria 1236|Gammaproteobacteria KLT serine threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - AAA_16,Guanylate_cyc,HEAT_2,PP2C_2,Pkinase EH3_k127_7787662_4 1203554.HMPREF1476_02265 1.904e-73 267.0 COG0313@1|root,COG0313@2|Bacteria,1MU0E@1224|Proteobacteria,2VHI1@28216|Betaproteobacteria,4PQAP@995019|Sutterellaceae 28216|Betaproteobacteria H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA rsmI - 2.1.1.198 ko:K07056 - - - - ko00000,ko01000,ko03009 - - - TP_methylase EH3_k127_7787662_7 261292.Nit79A3_1055 3.151e-35 150.0 COG3107@1|root,COG3107@2|Bacteria,1MUHR@1224|Proteobacteria,2VSUT@28216|Betaproteobacteria,372NN@32003|Nitrosomonadales 28216|Betaproteobacteria M LppC putative lipoprotein - - - ko:K07121 - - - - ko00000 - - - LppC EH3_k127_7787662_8 637389.Acaty_c2608 3.132e-28 119.0 COG0792@1|root,COG0792@2|Bacteria,1N6VN@1224|Proteobacteria,1SC8A@1236|Gammaproteobacteria,2ND4P@225057|Acidithiobacillales 225057|Acidithiobacillales L Belongs to the UPF0102 family - - - ko:K07460 - - - - ko00000 - - - UPF0102 EH3_k127_7787662_6 864051.BurJ1DRAFT_0076 8.67e-50 185.0 COG2823@1|root,COG2823@2|Bacteria,1MUZ2@1224|Proteobacteria,2VQIS@28216|Betaproteobacteria,1KKUY@119065|unclassified Burkholderiales 28216|Betaproteobacteria S BON domain - - - - - - - - - - - - BON EH3_k127_7787662_3 1005048.CFU_4176 7.21e-80 271.0 COG1704@1|root,COG1704@2|Bacteria,1MVH0@1224|Proteobacteria,2WFQ4@28216|Betaproteobacteria,473PZ@75682|Oxalobacteraceae 28216|Betaproteobacteria S LemA family - - - ko:K03744 - - - - ko00000 - - - LemA EH3_k127_7787662_0 1005048.CFU_4177 2.056e-152 504.0 COG0501@1|root,COG0501@2|Bacteria,1MVU4@1224|Proteobacteria,2VKBX@28216|Betaproteobacteria,473U2@75682|Oxalobacteraceae 28216|Betaproteobacteria O Peptidase family M48 - - - - - - - - - - - - Peptidase_M48 EH3_k127_7787662_5 365044.Pnap_0218 1.94e-66 236.0 2C8XG@1|root,2Z7PK@2|Bacteria,1RA5I@1224|Proteobacteria,2VQGY@28216|Betaproteobacteria,4ACHZ@80864|Comamonadaceae 28216|Betaproteobacteria S Protein of unknown function (DUF4197) - - - - - - - - - - - - DUF4197 EH3_k127_7787662_1 983917.RGE_44060 5.61e-132 422.0 COG0320@1|root,COG0320@2|Bacteria,1MVRD@1224|Proteobacteria,2VIFE@28216|Betaproteobacteria,1KJ50@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives lipA - 2.8.1.8 ko:K03644 ko00785,ko01100,map00785,map01100 - R07767,R07768 RC01978 ko00000,ko00001,ko01000 - - - LIAS_N,Radical_SAM EH3_k127_779706_0 522306.CAP2UW1_4053 1.343e-77 279.0 COG5001@1|root,COG5642@1|root,COG5001@2|Bacteria,COG5642@2|Bacteria,1MU2C@1224|Proteobacteria,2VH3V@28216|Betaproteobacteria,1KQH8@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria T SMART PAS domain containing protein - - - - - - - - - - - - EAL,GAF_2,GGDEF,PAS_3,PAS_4,PAS_9,SBP_bac_3,dCache_1 EH3_k127_7801957_0 1128421.JAGA01000002_gene557 2.065e-187 599.0 COG2866@1|root,COG2866@2|Bacteria,2NPI7@2323|unclassified Bacteria 2|Bacteria E Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - Peptidase_M14 EH3_k127_7801957_1 595537.Varpa_2338 9.017e-132 430.0 COG1638@1|root,COG1638@2|Bacteria,1MVHC@1224|Proteobacteria,2VM68@28216|Betaproteobacteria,4AA1S@80864|Comamonadaceae 28216|Betaproteobacteria G TIGRFAM TRAP dicarboxylate transporter, DctP subunit yiaO_1 - - - - - - - - - - - DctP EH3_k127_7805668_0 670487.Ocepr_0084 6.453e-129 430.0 COG0554@1|root,COG0554@2|Bacteria,1WI6Q@1297|Deinococcus-Thermus 2|Bacteria C Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate - - 2.7.1.30 ko:K00864 ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626 - R00847 RC00002,RC00017 ko00000,ko00001,ko01000,ko04147 - - - FGGY_C,FGGY_N EH3_k127_7805668_1 215803.DB30_6542 3.529e-63 231.0 COG0500@1|root,COG2226@2|Bacteria,1RC36@1224|Proteobacteria,42UDA@68525|delta/epsilon subdivisions,2WQHW@28221|Deltaproteobacteria,2YV8X@29|Myxococcales 28221|Deltaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_31 EH3_k127_7805668_2 365046.Rta_23850 2.096e-58 206.0 COG4119@1|root,COG4119@2|Bacteria,1RHCE@1224|Proteobacteria,2VV6B@28216|Betaproteobacteria 28216|Betaproteobacteria L NUDIX domain - - - - - - - - - - - - NUDIX EH3_k127_7837877_2 522306.CAP2UW1_2275 2.481e-10 61.0 COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,2VSKJ@28216|Betaproteobacteria,1KQ1S@119066|unclassified Betaproteobacteria 28216|Betaproteobacteria O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter groS - - ko:K04078 - - - - ko00000,ko03029,ko03110 - - - Cpn10 EH3_k127_7837877_3 1121479.AUBS01000022_gene857 0.0002232 52.0 2DMV2@1|root,32TV5@2|Bacteria,1RCB3@1224|Proteobacteria,2U7KF@28211|Alphaproteobacteria 28211|Alphaproteobacteria S CRISPR-associated protein Cse3 - - - ko:K19126 - - - - ko00000,ko02048 - - - CRISPR_assoc EH3_k127_7837877_0 391038.Bphy_0516 5.889e-88 300.0 COG3118@1|root,COG3118@2|Bacteria,1MV0R@1224|Proteobacteria,2VI6Z@28216|Betaproteobacteria,1K2GU@119060|Burkholderiaceae 28216|Betaproteobacteria O Thioredoxin - - - ko:K05838 - - - - ko00000,ko03110 - - - TPR_19,TPR_20,Thioredoxin EH3_k127_7837877_1 1223521.BBJX01000007_gene1520 1.242e-52 194.0 COG2027@1|root,COG2027@2|Bacteria,1MW40@1224|Proteobacteria,2VH20@28216|Betaproteobacteria,4AARG@80864|Comamonadaceae 28216|Betaproteobacteria M PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C dacB - 3.4.16.4 ko:K07259 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Peptidase_S13 EH3_k127_7841400_1 757424.Hsero_1977 4.538e-130 421.0 COG0441@1|root,COG0441@2|Bacteria,1MUP2@1224|Proteobacteria,2VHFD@28216|Betaproteobacteria,472DF@75682|Oxalobacteraceae 28216|Betaproteobacteria J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) thrS - 6.1.1.3 ko:K01868 ko00970,map00970 M00359,M00360 R03663 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD EH3_k127_7841400_0 391038.Bphy_1559 7.087e-242 777.0 COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,2VHSK@28216|Betaproteobacteria,1K1HX@119060|Burkholderiaceae 28216|Betaproteobacteria KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance relA - 2.7.6.5 ko:K00951 ko00230,map00230 - R00429 RC00002,RC00078 ko00000,ko00001,ko01000 - - - ACT_4,HD_4,RelA_SpoT,TGS EH3_k127_7841400_3 1532557.JL37_08620 1.624e-75 284.0 COG3228@1|root,COG3228@2|Bacteria,1RAHF@1224|Proteobacteria,2VJTJ@28216|Betaproteobacteria,3T2WP@506|Alcaligenaceae 28216|Betaproteobacteria S Belongs to the MtfA family mtfA - - ko:K09933 - - - - ko00000,ko01002 - - - Peptidase_M90 EH3_k127_7841400_4 395019.Bmul_6157 3.116e-66 233.0 COG0655@1|root,COG0655@2|Bacteria,1RAP5@1224|Proteobacteria,2VQVY@28216|Betaproteobacteria,1K1WS@119060|Burkholderiaceae 28216|Betaproteobacteria S NADPH-dependent FMN reductase - - - - - - - - - - - - FMN_red EH3_k127_7841400_5 1123073.KB899242_gene1329 2.575e-42 157.0 COG0251@1|root,COG0251@2|Bacteria,1MZ5K@1224|Proteobacteria,1S5WM@1236|Gammaproteobacteria,1X6UX@135614|Xanthomonadales 135614|Xanthomonadales J translation initiation inhibitor, yjgF family - - - - - - - - - - - - Ribonuc_L-PSP EH3_k127_7841400_2 1235457.C404_11300 1.141e-112 373.0 COG0596@1|root,COG0596@2|Bacteria,1MVVX@1224|Proteobacteria,2VH81@28216|Betaproteobacteria,1K0W4@119060|Burkholderiaceae 28216|Betaproteobacteria S Alpha beta hydrolase phaY2 - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 EH3_k127_7845208_3 1437882.AZRU01000075_gene4438 7.877e-142 480.0 COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,1RMDS@1236|Gammaproteobacteria,1YCUB@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria J Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs rne - 3.1.26.12 ko:K08300 ko03018,map03018 M00394 - - ko00000,ko00001,ko00002,ko01000,ko03009,ko03019 - - - RNase_E_G,S1 EH3_k127_7845208_2 365046.Rta_23120 2.115e-168 539.0 COG2896@1|root,COG2896@2|Bacteria,1MW3W@1224|Proteobacteria,2VHW4@28216|Betaproteobacteria,4AB8M@80864|Comamonadaceae 28216|Betaproteobacteria H Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate moaA - 4.1.99.22 ko:K03639 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09394 RC03420 ko00000,ko00001,ko01000 - - - Fer4_12,Fer4_14,Mob_synth_C,Radical_SAM EH3_k127_7845208_6 883126.HMPREF9710_01848 6.659e-52 190.0 COG0303@1|root,COG0746@1|root,COG0303@2|Bacteria,COG0746@2|Bacteria,1MVD5@1224|Proteobacteria,2VH78@28216|Betaproteobacteria,473QZ@75682|Oxalobacteraceae 28216|Betaproteobacteria H Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor moeA2 - 2.10.1.1 ko:K03750 ko00790,ko01100,map00790,map01100 - R09735 RC03462 ko00000,ko00001,ko01000 - - - MoCF_biosynth,MoeA_C,MoeA_N EH3_k127_7845208_5 1415780.JPOG01000001_gene2728 1.491e-77 280.0 COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,1RMQU@1236|Gammaproteobacteria,1X5HG@135614|Xanthomonadales 135614|Xanthomonadales H molybdopterin biosynthesis moeA1 - 2.10.1.1 ko:K03750 ko00790,ko01100,map00790,map01100 - R09735 RC03462 ko00000,ko00001,ko01000 - - - MoCF_biosynth,MoeA_C,MoeA_N EH3_k127_7845208_1 426114.THI_0274 2.589e-172 552.0 COG1012@1|root,COG1012@2|Bacteria,1MVGW@1224|Proteobacteria,2VI2E@28216|Betaproteobacteria,1KJXC@119065|unclassified Burkholderiales 28216|Betaproteobacteria C belongs to the aldehyde dehydrogenase family calB - 1.2.1.3,1.2.1.68 ko:K00128,ko:K00154 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh EH3_k127_7845208_4 1125863.JAFN01000001_gene1710 2.21e-140 458.0 COG1972@1|root,COG1972@2|Bacteria,1MXXX@1224|Proteobacteria,42PC9@68525|delta/epsilon subdivisions,2WKA4@28221|Deltaproteobacteria 28221|Deltaproteobacteria F Na dependent nucleoside transporter - - - ko:K03317 - - - - ko00000 2.A.41 - - Gate,Nucleos_tra2_C,Nucleos_tra2_N EH3_k127_7845208_0 640511.BC1002_1806 2.933e-216 674.0 COG2225@1|root,COG2225@2|Bacteria,1MVEV@1224|Proteobacteria,2VJK0@28216|Betaproteobacteria,1K4T4@119060|Burkholderiaceae 28216|Betaproteobacteria H Belongs to the malate synthase family aceB - 2.3.3.9 ko:K01638 ko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200 M00012 R00472 RC00004,RC00308,RC02747 ko00000,ko00001,ko00002,ko01000 - - - Malate_synthase EH3_k127_7851865_0 460265.Mnod_2274 4.799e-234 735.0 COG0659@1|root,COG0659@2|Bacteria,1MWDF@1224|Proteobacteria,2TT0G@28211|Alphaproteobacteria,1JR06@119045|Methylobacteriaceae 28211|Alphaproteobacteria P PFAM Sulfate transporter antisigma-factor antagonist STAS - - - - - - - - - - - - STAS,Sulfate_transp EH3_k127_7851865_1 1121403.AUCV01000003_gene1736 0.0008481 45.0 2E8QN@1|root,3331M@2|Bacteria,1ND4I@1224|Proteobacteria,430TR@68525|delta/epsilon subdivisions,2WVZ7@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - EH3_k127_7866045_7 1304877.KI519399_gene3852 4.56e-35 138.0 COG0577@1|root,COG0577@2|Bacteria,1MWBK@1224|Proteobacteria,2TUJD@28211|Alphaproteobacteria,3JWCP@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD EH3_k127_7866045_1 1538295.JY96_14395 3.172e-145 469.0 COG0577@1|root,COG0577@2|Bacteria,1MX7X@1224|Proteobacteria,2VMYG@28216|Betaproteobacteria,1KN6F@119065|unclassified Burkholderiales 28216|Betaproteobacteria V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD EH3_k127_7866045_2 1123504.JQKD01000005_gene4769 9.939e-100 340.0 COG3181@1|root,COG3181@2|Bacteria,1MXEX@1224|Proteobacteria,2VJTU@28216|Betaproteobacteria,4AAYT@80864|Comamonadaceae 28216|Betaproteobacteria S PFAM conserved - - - ko:K07795 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.80.1 - - TctC EH3_k127_7866045_9 977880.RALTA_A3175 2.849e-20 96.0 2C1K4@1|root,30F52@2|Bacteria,1REDQ@1224|Proteobacteria,2VRSY@28216|Betaproteobacteria,1KCUQ@119060|Burkholderiaceae 28216|Betaproteobacteria S Tripartite tricarboxylate transporter TctB family - - - ko:K07794 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.80.1 - - TctB EH3_k127_7866045_0 1279038.KB907338_gene807 1.002e-211 668.0 COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,2JPTU@204441|Rhodospirillales 204441|Rhodospirillales S Tripartite tricarboxylate transporter TctA family - - - ko:K07793 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.80.1 - - TctA EH3_k127_7866045_5 1156919.QWC_20115 2.25e-84 290.0 COG1073@1|root,COG1073@2|Bacteria,1RIWI@1224|Proteobacteria,2VJF9@28216|Betaproteobacteria,3T6HD@506|Alcaligenaceae 28216|Betaproteobacteria S Hydrolases of the alpha beta superfamily - - - ko:K06889 - - - - ko00000 - - - Hydrolase_4 EH3_k127_7866045_4 1366050.N234_20795 4.195e-89 308.0 COG3180@1|root,COG3180@2|Bacteria,1MUFS@1224|Proteobacteria,2VM18@28216|Betaproteobacteria,1KD4T@119060|Burkholderiaceae 28216|Betaproteobacteria C Pfam:AmoA - - - ko:K07120 - - - - ko00000 - - - AbrB EH3_k127_7866045_3 485913.Krac_11103 1.79e-91 326.0 COG0451@1|root,COG0451@2|Bacteria,2G9SG@200795|Chloroflexi 200795|Chloroflexi GM PFAM NAD-dependent epimerase dehydratase - - - - - - - - - - - - Epimerase EH3_k127_7866045_8 1158292.JPOE01000002_gene3029 6.847e-26 111.0 COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2VVTG@28216|Betaproteobacteria,1KMN9@119065|unclassified Burkholderiales 28216|Betaproteobacteria K 'Cold-shock' DNA-binding domain cspA2 - - ko:K03704 - - - - ko00000,ko03000 - - - CSD EH3_k127_7866045_6 1532557.JL37_16460 3.377e-64 223.0 COG1274@1|root,COG1274@2|Bacteria,1MX3C@1224|Proteobacteria,2VINZ@28216|Betaproteobacteria,3T2XX@506|Alcaligenaceae 28216|Betaproteobacteria F Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle pckG GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 ko:K01596 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko03320,ko04068,ko04151,ko04152,ko04910,ko04920,ko04922,ko04931,ko04964,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map03320,map04068,map04151,map04152,map04910,map04920,map04922,map04931,map04964 M00003 R00431,R00726 RC00002,RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPCK_C,PEPCK_N EH3_k127_7900411_3 204773.HEAR2128 2.096e-80 284.0 COG0515@1|root,COG0515@2|Bacteria,1PJRR@1224|Proteobacteria,2VHMW@28216|Betaproteobacteria,473V0@75682|Oxalobacteraceae 28216|Betaproteobacteria KLT Protein tyrosine kinase spkD - - - - - - - - - - - Pkinase EH3_k127_7900411_2 1203554.HMPREF1476_00281 8.469e-83 284.0 COG1561@1|root,COG1561@2|Bacteria,1MWRA@1224|Proteobacteria,2VIFC@28216|Betaproteobacteria,4PQ8J@995019|Sutterellaceae 28216|Betaproteobacteria S Domain of unknown function (DUF1732) yicC - - - - - - - - - - - DUF1732,YicC_N EH3_k127_7900411_1 388051.AUFE01000006_gene1208 3.914e-90 301.0 COG0194@1|root,COG0194@2|Bacteria,1MW92@1224|Proteobacteria,2VPCK@28216|Betaproteobacteria,1K0HE@119060|Burkholderiaceae 28216|Betaproteobacteria F Essential for recycling GMP and indirectly, cGMP gmk - 2.7.4.8 ko:K00942 ko00230,ko01100,map00230,map01100 M00050 R00332,R02090 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_kin EH3_k127_7900411_4 1031711.RSPO_c01300 2.761e-29 117.0 COG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,2VVUH@28216|Betaproteobacteria,1K9AE@119060|Burkholderiaceae 28216|Betaproteobacteria K Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits rpoZ - 2.7.7.6 ko:K03060 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb6 EH3_k127_7900411_0 243160.BMA2094 9.427e-95 317.0 COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,2VIA1@28216|Betaproteobacteria,1JZNT@119060|Burkholderiaceae 28216|Betaproteobacteria KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance spoT - 2.7.6.5,3.1.7.2 ko:K01139 ko00230,map00230 - R00336,R00429 RC00002,RC00078 ko00000,ko00001,ko01000,ko03009 - - - ACT_4,HD_4,RelA_SpoT,TGS EH3_k127_7903364_2 640081.Dsui_0864 2.857e-34 133.0 COG5002@1|root,COG5002@2|Bacteria,1MWF3@1224|Proteobacteria,2VIBV@28216|Betaproteobacteria,2KVEJ@206389|Rhodocyclales 206389|Rhodocyclales T Histidine kinase phoR - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DUF3329,HATPase_c,HisKA,PAS_8 EH3_k127_7903364_3 1279017.AQYJ01000026_gene22 2.303e-11 70.0 2DU2E@1|root,33NN7@2|Bacteria,1P5P1@1224|Proteobacteria,1SV3F@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - EH3_k127_7903364_1 864073.HFRIS_007074 1.316e-81 275.0 COG0782@1|root,COG0782@2|Bacteria,1RAP0@1224|Proteobacteria,2VQ09@28216|Betaproteobacteria,4739V@75682|Oxalobacteraceae 28216|Betaproteobacteria K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length greB - - ko:K04760 - - - - ko00000,ko03021 - - - GreA_GreB,GreA_GreB_N EH3_k127_7903364_0 1159870.KB907784_gene2971 3.627e-201 639.0 COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,2VIA1@28216|Betaproteobacteria,3T2RE@506|Alcaligenaceae 28216|Betaproteobacteria KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance spoT - 2.7.6.5,3.1.7.2 ko:K01139 ko00230,map00230 - R00336,R00429 RC00002,RC00078 ko00000,ko00001,ko01000,ko03009 - - - ACT_4,HD_4,RelA_SpoT,TGS EH3_k127_7925368_2 1095769.CAHF01000014_gene2999 2.588e-102 338.0 COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,2VJGC@28216|Betaproteobacteria,472T4@75682|Oxalobacteraceae 28216|Betaproteobacteria C Pyruvate ferredoxin/flavodoxin oxidoreductase - - 1.2.7.8 ko:K04090 - - - - br01601,ko00000,ko01000 - - - POR,TPP_enzyme_C EH3_k127_7925368_3 398578.Daci_3728 3.78e-54 191.0 COG0393@1|root,COG0393@2|Bacteria,1N0XM@1224|Proteobacteria,2VTRD@28216|Betaproteobacteria,4AENN@80864|Comamonadaceae 28216|Betaproteobacteria S Belongs to the UPF0145 family - - - - - - - - - - - - YbjQ_1 EH3_k127_7925368_4 395495.Lcho_4291 6.903e-52 187.0 COG3671@1|root,COG3671@2|Bacteria,1N51H@1224|Proteobacteria,2VUKZ@28216|Betaproteobacteria,1KMEZ@119065|unclassified Burkholderiales 28216|Betaproteobacteria S membrane - - - - - - - - - - - - - EH3_k127_7925368_0 1005048.CFU_4103 6.488e-142 477.0 COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2VI01@28216|Betaproteobacteria,4737T@75682|Oxalobacteraceae 28216|Betaproteobacteria E PFAM Aminotransferase class I and II aspC - 2.6.1.1 ko:K00812 ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00355,R00694,R00734,R00896,R02433,R02619,R05052 RC00006 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 EH3_k127_7925368_1 264198.Reut_A3231 4.558e-110 365.0 COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,2VM1X@28216|Betaproteobacteria,1K2H7@119060|Burkholderiaceae 28216|Betaproteobacteria NU General secretion pathway protein F gspF - - ko:K02455 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSF EH3_k127_7928180_0 395495.Lcho_2950 7.204e-95 320.0 COG2358@1|root,COG2358@2|Bacteria,1PNJV@1224|Proteobacteria,2VI8H@28216|Betaproteobacteria,1KKCI@119065|unclassified Burkholderiales 28216|Betaproteobacteria S NMT1-like family - - - - - - - - - - - - NMT1_3 EH3_k127_7928180_1 742821.HMPREF9464_00457 8.778e-93 314.0 COG0589@1|root,COG0589@2|Bacteria,1N8EJ@1224|Proteobacteria,2VUAF@28216|Betaproteobacteria,4PQ9K@995019|Sutterellaceae 28216|Betaproteobacteria T Universal stress protein family - - - - - - - - - - - - Usp EH3_k127_7928180_2 204773.HEAR0815 7.47e-05 47.0 COG0697@1|root,COG0697@2|Bacteria,1MXCD@1224|Proteobacteria,2VMQB@28216|Betaproteobacteria,472XB@75682|Oxalobacteraceae 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_796640_10 859657.RPSI07_2760 8.374e-19 91.0 2E7II@1|root,3320V@2|Bacteria,1N91Y@1224|Proteobacteria,2VW18@28216|Betaproteobacteria,1K8QZ@119060|Burkholderiaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_796640_1 381666.H16_A0497 4.469e-165 525.0 COG2255@1|root,COG2255@2|Bacteria,1MU38@1224|Proteobacteria,2VH0J@28216|Betaproteobacteria,1K2TQ@119060|Burkholderiaceae 28216|Betaproteobacteria L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing ruvB - 3.6.4.12 ko:K03551 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvB_C,RuvB_N EH3_k127_796640_5 1217718.ALOU01000002_gene4683 1.948e-82 281.0 COG0632@1|root,COG0632@2|Bacteria,1MWJR@1224|Proteobacteria,2VJ98@28216|Betaproteobacteria,1K0EV@119060|Burkholderiaceae 28216|Betaproteobacteria L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB ruvA - 3.6.4.12 ko:K03550 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - HHH_5,RuvA_C,RuvA_N EH3_k127_796640_7 580332.Slit_0512 5.401e-52 190.0 COG0817@1|root,COG0817@2|Bacteria,1MUJI@1224|Proteobacteria,2VQ3U@28216|Betaproteobacteria,44VRQ@713636|Nitrosomonadales 28216|Betaproteobacteria L Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group ruvC - 3.1.22.4 ko:K01159 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvC EH3_k127_796640_0 742823.HMPREF9465_00495 2.797e-240 755.0 COG0138@1|root,COG0138@2|Bacteria,1MUDQ@1224|Proteobacteria,2VJPX@28216|Betaproteobacteria,4PQ94@995019|Sutterellaceae 28216|Betaproteobacteria F AICARFT/IMPCHase bienzyme purH - 2.1.2.3,3.5.4.10 ko:K00602 ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523 M00048 R01127,R04560 RC00026,RC00263,RC00456 ko00000,ko00001,ko00002,ko01000,ko04147 - - - AICARFT_IMPCHas,MGS EH3_k127_796640_9 1123367.C666_01770 1.432e-21 98.0 COG2901@1|root,COG2901@2|Bacteria,1N7MJ@1224|Proteobacteria,2VVQK@28216|Betaproteobacteria,2KXF1@206389|Rhodocyclales 206389|Rhodocyclales KL Bacterial regulatory protein, Fis family - - - ko:K03557 ko05111,map05111 - - - ko00000,ko00001,ko03000,ko03036,ko03400 - - - HTH_8 EH3_k127_796640_4 1349767.GJA_4593 4.425e-140 454.0 COG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,2VHBP@28216|Betaproteobacteria,4738U@75682|Oxalobacteraceae 28216|Betaproteobacteria J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines dusB - - ko:K05540 - - - - ko00000,ko01000,ko03016 - - - Dus EH3_k127_796640_8 267608.RSc0508 7.411e-52 205.0 COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,2VKV7@28216|Betaproteobacteria,1JZQC@119060|Burkholderiaceae 28216|Betaproteobacteria CH Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family ubiH - - ko:K03185 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04989,R08773 RC02670 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_3 EH3_k127_796640_6 1031711.RSPO_c02879 1.007e-63 226.0 COG1208@1|root,COG1208@2|Bacteria,1R9ZD@1224|Proteobacteria,2VJUN@28216|Betaproteobacteria,1JZRV@119060|Burkholderiaceae 28216|Betaproteobacteria JM Nucleotidyl transferase rmlA - 2.7.7.99 ko:K00992 ko00520,ko01100,map00520,map01100 - R11025 RC00002 ko00000,ko00001,ko01000 - - - NTP_transferase EH3_k127_796640_3 1286093.C266_01150 4.668e-142 463.0 COG3178@1|root,COG3178@2|Bacteria,1MXCH@1224|Proteobacteria,2VHBC@28216|Betaproteobacteria,1K0G3@119060|Burkholderiaceae 28216|Betaproteobacteria S Aminoglycoside phosphotransferase - - 2.7.1.221 ko:K07102 ko00520,ko01100,map00520,map01100 - R08968,R11024 RC00002,RC00078 ko00000,ko00001,ko01000 - - - APH EH3_k127_796640_2 742823.HMPREF9465_00500 5.144e-157 514.0 COG1452@1|root,COG1452@2|Bacteria,1MUJC@1224|Proteobacteria,2VIJ7@28216|Betaproteobacteria,4PQR3@995019|Sutterellaceae 28216|Betaproteobacteria M Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane lptD - - ko:K04744 - - - - ko00000,ko02000 1.B.42.1 - - OstA,OstA_C EH3_k127_7978896_1 1238182.C882_2396 7.836e-84 288.0 COG1028@1|root,COG1028@2|Bacteria,1MVQW@1224|Proteobacteria,2TUA2@28211|Alphaproteobacteria,2JQ5Y@204441|Rhodospirillales 204441|Rhodospirillales IQ KR domain - - - - - - - - - - - - adh_short_C2 EH3_k127_7978896_0 420662.Mpe_A0238 9.82e-112 369.0 COG0789@1|root,COG5012@1|root,COG0789@2|Bacteria,COG5012@2|Bacteria,1R2NF@1224|Proteobacteria,2VJDG@28216|Betaproteobacteria,1KJT9@119065|unclassified Burkholderiales 28216|Betaproteobacteria K B12 binding domain - - - ko:K22491 - - - - ko00000,ko03000 - - - B12-binding,B12-binding_2,MerR_1 EH3_k127_7998334_3 338969.Rfer_1964 6.384e-98 334.0 COG5322@1|root,COG5322@2|Bacteria,1R60X@1224|Proteobacteria,2W0QF@28216|Betaproteobacteria 28216|Betaproteobacteria S oxidoreductase activity - - - - - - - - - - - - - EH3_k127_7998334_1 338969.Rfer_1965 1.035e-183 584.0 COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2VI90@28216|Betaproteobacteria,4A9Y2@80864|Comamonadaceae 28216|Betaproteobacteria C alcohol dehydrogenase - - - - - - - - - - - - Fe-ADH EH3_k127_7998334_4 1218075.BAYA01000026_gene5462 4.393e-56 224.0 COG0494@1|root,COG0494@2|Bacteria,1RCX7@1224|Proteobacteria,2VRU5@28216|Betaproteobacteria,1K3Z8@119060|Burkholderiaceae 28216|Betaproteobacteria L PFAM NUDIX hydrolase nudF - 3.6.1.13 ko:K01515 ko00230,map00230 - R01054 RC00002 ko00000,ko00001,ko01000 - - - NUDIX EH3_k127_7998334_0 1144319.PMI16_03542 3.613e-184 588.0 COG1007@1|root,COG1007@2|Bacteria,1MV56@1224|Proteobacteria,2VHWX@28216|Betaproteobacteria,472IA@75682|Oxalobacteraceae 28216|Betaproteobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoN - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M EH3_k127_7998334_2 339670.Bamb_2275 1.7e-153 488.0 COG1008@1|root,COG1008@2|Bacteria,1MV7V@1224|Proteobacteria,2VIAX@28216|Betaproteobacteria,1K17X@119060|Burkholderiaceae 28216|Betaproteobacteria C proton-translocating NADH-quinone oxidoreductase, chain M nuoM - 1.6.5.3 ko:K00342 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q5_N,Proton_antipo_M EH3_k127_8004787_7 1366050.N234_19195 9.548e-60 213.0 COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,2VH42@28216|Betaproteobacteria,1JZYY@119060|Burkholderiaceae 28216|Betaproteobacteria V Transport permease protein yadH - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane EH3_k127_8004787_2 626418.bglu_1g03260 1.045e-127 415.0 COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,2VI81@28216|Betaproteobacteria,1JZUI@119060|Burkholderiaceae 28216|Betaproteobacteria V ABC transporter ybhF_1 - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran EH3_k127_8004787_9 1500894.JQNN01000001_gene3491 1.445e-11 74.0 COG3113@1|root,COG3113@2|Bacteria,1NGIE@1224|Proteobacteria,2VXUB@28216|Betaproteobacteria,4757N@75682|Oxalobacteraceae 28216|Betaproteobacteria S STAS domain - - - ko:K07122 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - STAS_2 EH3_k127_8004787_6 1144319.PMI16_02331 1.319e-66 233.0 COG2854@1|root,COG2854@2|Bacteria,1NKFA@1224|Proteobacteria,2VR85@28216|Betaproteobacteria,4745A@75682|Oxalobacteraceae 28216|Betaproteobacteria Q MlaC protein ttg2D - - ko:K07323 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - MlaC EH3_k127_8004787_4 640081.Dsui_1401 1.204e-74 260.0 COG2853@1|root,COG2853@2|Bacteria,1MVX0@1224|Proteobacteria,2VQ97@28216|Betaproteobacteria,2KW45@206389|Rhodocyclales 206389|Rhodocyclales M VacJ family lipoprotein vacJ - - ko:K04754 - - - - ko00000 - - - MlaA EH3_k127_8004787_8 1095769.CAHF01000003_gene1013 9.69e-58 205.0 COG1463@1|root,COG1463@2|Bacteria,1NCUG@1224|Proteobacteria,2VRKR@28216|Betaproteobacteria,4741P@75682|Oxalobacteraceae 28216|Betaproteobacteria Q ABC-type transport system involved in resistance to organic solvents, periplasmic component mlaD - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD EH3_k127_8004787_3 987059.RBXJA2T_01025 1.29e-106 365.0 COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2VI5T@28216|Betaproteobacteria,1KJC0@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q Permease MlaE ttg2B - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE EH3_k127_8004787_1 983917.RGE_08300 6.673e-132 445.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2VJIA@28216|Betaproteobacteria,1KIX8@119065|unclassified Burkholderiales 28216|Betaproteobacteria Q ABC transporter ttg2A - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran EH3_k127_8004787_0 1304883.KI912532_gene386 3.181e-208 670.0 COG4389@1|root,COG4389@2|Bacteria,1MWEH@1224|Proteobacteria,2VIZV@28216|Betaproteobacteria,2KUTK@206389|Rhodocyclales 206389|Rhodocyclales L Site-specific recombinase - - - - - - - - - - - - SpecificRecomb EH3_k127_8004787_5 243233.MCA1632 2.145e-72 248.0 COG1196@1|root,COG3264@1|root,COG1196@2|Bacteria,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,1RMYY@1236|Gammaproteobacteria,1XE6E@135618|Methylococcales 135618|Methylococcales M Mechanosensitive ion channel - - - - - - - - - - - - MS_channel EH3_k127_8056175_1 251229.Chro_0877 1.549e-139 491.0 COG1132@1|root,COG1132@2|Bacteria,1G1JY@1117|Cyanobacteria,3VINJ@52604|Pleurocapsales 1117|Cyanobacteria V ABC-type multidrug transport system ATPase and permease - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran EH3_k127_8056175_0 335543.Sfum_3546 4.81e-319 1002.0 COG1216@1|root,COG3250@1|root,COG1216@2|Bacteria,COG3250@2|Bacteria,1R42U@1224|Proteobacteria,42UMM@68525|delta/epsilon subdivisions,2WQVW@28221|Deltaproteobacteria,2MS0N@213462|Syntrophobacterales 28221|Deltaproteobacteria M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glyco_hydro_2_C,Glycos_transf_2 EH3_k127_8056175_2 1121406.JAEX01000002_gene1002 5.703e-78 265.0 COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,42N94@68525|delta/epsilon subdivisions,2WJH4@28221|Deltaproteobacteria,2M8II@213115|Desulfovibrionales 28221|Deltaproteobacteria M Belongs to the NAD(P)-dependent epimerase dehydratase family galE - 5.1.3.2,5.1.3.5 ko:K01784,ko:K12448 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R01473,R02984 RC00289,RC00528 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd EH3_k127_8067612_0 62928.azo3787 1.739e-160 510.0 COG0374@1|root,COG0374@2|Bacteria,1MWFJ@1224|Proteobacteria,2VJ52@28216|Betaproteobacteria,2KV5T@206389|Rhodocyclales 206389|Rhodocyclales C Nickel-dependent hydrogenase - - 1.12.99.6 ko:K06281 ko00633,ko01120,map00633,map01120 - R08034 RC00250 ko00000,ko00001,ko01000 - - - NiFeSe_Hases EH3_k127_8067612_1 384765.SIAM614_29581 3.991e-77 264.0 COG1969@1|root,COG1969@2|Bacteria,1MU87@1224|Proteobacteria,2TSH2@28211|Alphaproteobacteria 28211|Alphaproteobacteria C Ni Fe-hydrogenase, b-type cytochrome subunit hupC GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K03620 ko02020,map02020 - - - ko00000,ko00001 - - - Ni_hydr_CYTB EH3_k127_8067612_3 62928.azo3789 2.594e-25 108.0 COG3093@1|root,COG3093@2|Bacteria,1N76J@1224|Proteobacteria,2VU0Y@28216|Betaproteobacteria,2KXJ6@206389|Rhodocyclales 206389|Rhodocyclales K Helix-turn-helix - - - ko:K21498 - - - - ko00000,ko02048 - - - HTH_3 EH3_k127_8067612_2 1105367.CG50_02340 5.144e-58 211.0 COG0680@1|root,COG0680@2|Bacteria,1RE1C@1224|Proteobacteria,2U2IN@28211|Alphaproteobacteria 28211|Alphaproteobacteria C hydrogenase expression formation protein hupD GO:0003674,GO:0003824,GO:0004175,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - ko:K03605 - - - - ko00000,ko01000,ko01002 - - - HycI EH3_k127_8086288_3 1249627.D779_4047 5.672e-41 152.0 COG1982@1|root,COG1982@2|Bacteria,1MWK4@1224|Proteobacteria,1RMVF@1236|Gammaproteobacteria,1WXY3@135613|Chromatiales 135613|Chromatiales E PFAM Orn Lys Arg decarboxylase - - 4.1.1.19 ko:K01584 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - OKR_DC_1,OKR_DC_1_C,OKR_DC_1_N EH3_k127_8086288_2 1121033.AUCF01000037_gene3916 7.613e-65 235.0 COG0458@1|root,COG0458@2|Bacteria,1RJ88@1224|Proteobacteria,2UB8A@28211|Alphaproteobacteria,2JYFQ@204441|Rhodospirillales 204441|Rhodospirillales EF ATP-grasp domain - - - - - - - - - - - - - EH3_k127_8086288_1 1002340.AFCF01000033_gene3892 2.28e-129 421.0 COG0745@1|root,COG2114@1|root,COG0745@2|Bacteria,COG2114@2|Bacteria,1MV1V@1224|Proteobacteria,2TXS1@28211|Alphaproteobacteria 28211|Alphaproteobacteria T Adenylyl- / guanylyl cyclase, catalytic domain - - 4.6.1.1 ko:K01768 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_cyc EH3_k127_8086288_4 981384.AEYW01000001_gene1563 1.853e-21 98.0 COG2198@1|root,COG2198@2|Bacteria 2|Bacteria T Histidine kinase - - - ko:K20976 ko02020,ko02025,map02020,map02025 M00820 - - ko00000,ko00001,ko00002,ko02022 - - - Hpt EH3_k127_8086288_0 981384.AEYW01000001_gene1562 9.311e-261 821.0 COG0642@1|root,COG0642@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TX3Q@28211|Alphaproteobacteria 28211|Alphaproteobacteria T Histidine kinase-like ATPases - - - - - - - - - - - - GAF,GAF_2,HAMP,HATPase_c,HisKA,Hpt,Response_reg,dCache_1 EH3_k127_8109832_1 762966.HMPREF9439_00322 4.253e-139 445.0 COG0548@1|root,COG0548@2|Bacteria,1MU17@1224|Proteobacteria,2VIIY@28216|Betaproteobacteria,4PRB3@995019|Sutterellaceae 28216|Betaproteobacteria F Belongs to the acetylglutamate kinase family. ArgB subfamily argB - 2.7.2.8 ko:K00930 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R02649 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase EH3_k127_8109832_3 1159870.KB907784_gene835 1.431e-61 221.0 COG0637@1|root,COG0637@2|Bacteria,1QTWD@1224|Proteobacteria,2VNTW@28216|Betaproteobacteria,3T9HS@506|Alcaligenaceae 28216|Betaproteobacteria S Haloacid dehalogenase-like hydrolase - - - ko:K07025 - - - - ko00000 - - - HAD_2 EH3_k127_8109832_0 29581.BW37_01529 2.911e-196 630.0 COG0616@1|root,COG0616@2|Bacteria,1MUXE@1224|Proteobacteria,2VH94@28216|Betaproteobacteria,476YI@75682|Oxalobacteraceae 28216|Betaproteobacteria OU Peptidase family S49 sppA - - ko:K04773 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S49 EH3_k127_8109832_2 93220.LV28_15625 3.301e-75 259.0 COG1309@1|root,COG1309@2|Bacteria,1MWF7@1224|Proteobacteria,2VQ4C@28216|Betaproteobacteria,1K3TI@119060|Burkholderiaceae 28216|Betaproteobacteria K PFAM regulatory protein TetR slmA - - ko:K05501 - - - - ko00000,ko03000,ko03036 - - - TetR_N EH3_k127_8157021_4 1155714.KB891993_gene5848 1.707e-09 64.0 COG0513@1|root,COG0513@2|Bacteria,2GIUR@201174|Actinobacteria 201174|Actinobacteria L Belongs to the DEAD box helicase family deaD GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030312,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360 3.6.4.13 ko:K05592,ko:K11927 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03009,ko03019 - - - DEAD,DbpA,Helicase_C EH3_k127_8157021_3 196490.AUEZ01000044_gene7004 4.992e-11 67.0 COG1028@1|root,COG1028@2|Bacteria,1MWJQ@1224|Proteobacteria,2TSQ1@28211|Alphaproteobacteria,3JRBU@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria IQ Enoyl-(Acyl carrier protein) reductase MA20_19265 - - - - - - - - - - - adh_short,adh_short_C2 EH3_k127_8157021_2 1515746.HR45_01480 2.036e-21 100.0 COG4635@1|root,COG4635@2|Bacteria,1RAH2@1224|Proteobacteria,1S372@1236|Gammaproteobacteria,2QBP7@267890|Shewanellaceae 1236|Gammaproteobacteria CH Flavodoxin domain hemG GO:0000166,GO:0003674,GO:0003824,GO:0004729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0010181,GO:0016491,GO:0016627,GO:0016634,GO:0016635,GO:0018130,GO:0019438,GO:0032553,GO:0033013,GO:0033014,GO:0034641,GO:0036094,GO:0042168,GO:0042440,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070818,GO:0070819,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.5.3 ko:K00230 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R09489 RC00885 ko00000,ko00001,ko00002,ko01000 - - iAF1260.b3850,iAPECO1_1312.APECO1_2607,iB21_1397.B21_03690,iBWG_1329.BWG_3526,iE2348C_1286.E2348C_4162,iECABU_c1320.ECABU_c43520,iECBD_1354.ECBD_4175,iECB_1328.ECB_03741,iECDH10B_1368.ECDH10B_4039,iECDH1ME8569_1439.ECDH1ME8569_3727,iECD_1391.ECD_03741,iECED1_1282.ECED1_4552,iECH74115_1262.ECH74115_5289,iECIAI1_1343.ECIAI1_4043,iECNA114_1301.ECNA114_4159,iECOK1_1307.ECOK1_4319,iECS88_1305.ECS88_4298,iECSF_1327.ECSF_3707,iECSP_1301.ECSP_4903,iECs_1301.ECs4778,iEcDH1_1363.EcDH1_4131,iEcHS_1320.EcHS_A4073,iEcolC_1368.EcolC_4160,iG2583_1286.G2583_4648,iJO1366.b3850,iJR904.b3850,iLF82_1304.LF82_0981,iNRG857_1313.NRG857_19220,iSDY_1059.SDY_3895,iUMN146_1321.UM146_19505,iUMNK88_1353.UMNK88_4678,iUTI89_1310.UTI89_C4435,iY75_1357.Y75_RS17835,iZ_1308.Z5372,ic_1306.c4797 Flavodoxin_5 EH3_k127_8157021_1 234267.Acid_3078 1.086e-211 673.0 COG1960@1|root,COG1960@2|Bacteria 2|Bacteria I acyl-CoA dehydrogenase activity - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N EH3_k127_8157021_0 234267.Acid_3077 0.0 1835.0 COG0304@1|root,COG3321@1|root,COG4221@1|root,COG0304@2|Bacteria,COG3321@2|Bacteria,COG4221@2|Bacteria,3Y347@57723|Acidobacteria 57723|Acidobacteria Q Acyl transferase domain - - - - - - - - - - - - ADH_zinc_N,AMP-binding,AMP-binding_C,Acyl_transf_1,Condensation,KAsynt_C_assoc,KR,Ketoacyl-synt_C,Methyltransf_12,PP-binding,PS-DH,ketoacyl-synt EH3_k127_8228731_1 987059.RBXJA2T_08590 9.589e-74 252.0 COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2VKRZ@28216|Betaproteobacteria,1KITC@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - 2.6.1.18 ko:K00822 ko00280,ko00410,ko00640,ko01100,map00280,map00410,map00640,map01100 - R00907,R04187 RC00008,RC00062,RC00160 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_3 EH3_k127_8228731_3 757424.Hsero_0074 1.24e-17 90.0 2EBNJ@1|root,335NT@2|Bacteria,1N847@1224|Proteobacteria,2VW9H@28216|Betaproteobacteria,474HJ@75682|Oxalobacteraceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_8228731_4 762966.HMPREF9439_00361 6.116e-14 76.0 2E54A@1|root,314J8@2|Bacteria,1PU9K@1224|Proteobacteria,2WARK@28216|Betaproteobacteria,4PR9I@995019|Sutterellaceae 28216|Betaproteobacteria S Domain of unknown function (DUF1840) - - - - - - - - - - - - DUF1840 EH3_k127_8228731_2 1306174.JODP01000004_gene737 4.737e-43 173.0 COG2199@1|root,COG3706@2|Bacteria,2HJUC@201174|Actinobacteria 201174|Actinobacteria T Diguanylate cyclase, GGDEF domain - - - - - - - - - - - - GGDEF EH3_k127_8228731_0 420662.Mpe_A0135 5.107e-76 260.0 COG0745@1|root,COG0745@2|Bacteria,1MVCB@1224|Proteobacteria,2VQH1@28216|Betaproteobacteria,1KM67@119065|unclassified Burkholderiales 28216|Betaproteobacteria K Transcriptional regulatory protein, C terminal creB - - ko:K07663 ko02020,map02020 M00449 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C EH3_k127_8245407_1 1100720.ALKN01000035_gene961 1.348e-14 77.0 COG0500@1|root,COG0500@2|Bacteria,1QU8V@1224|Proteobacteria,2WGJ7@28216|Betaproteobacteria,4AHEN@80864|Comamonadaceae 28216|Betaproteobacteria Q Histone methylation protein DOT1 - - - - - - - - - - - - Methyltransf_25,Methyltransf_31 EH3_k127_8245407_0 1268622.AVS7_01344 1.651e-126 419.0 COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,2VMP7@28216|Betaproteobacteria 28216|Betaproteobacteria E amino acid steT - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 EH3_k127_8255790_3 426114.THI_3381 9.404e-116 382.0 COG2391@1|root,COG2391@2|Bacteria,1PF9B@1224|Proteobacteria,2VKKD@28216|Betaproteobacteria 28216|Betaproteobacteria S Sulphur transport - - - ko:K07112 - - - - ko00000 - - - Sulf_transp EH3_k127_8255790_4 1100720.ALKN01000028_gene2622 5.986e-80 278.0 COG2897@1|root,COG2897@2|Bacteria,1P6SN@1224|Proteobacteria,2VKIM@28216|Betaproteobacteria,4ACY6@80864|Comamonadaceae 28216|Betaproteobacteria P PFAM Rhodanese domain protein - - 2.8.1.1,2.8.1.2 ko:K01011 ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122 - R01931,R03105,R03106 RC00214 ko00000,ko00001,ko01000 - - - Rhodanese EH3_k127_8255790_0 1123393.KB891326_gene83 1.032e-215 687.0 COG1387@1|root,COG1387@2|Bacteria,1MYXV@1224|Proteobacteria,2VJIQ@28216|Betaproteobacteria,1KSJ5@119069|Hydrogenophilales 119069|Hydrogenophilales L DNA polymerase X family - - - ko:K02347 - - - - ko00000,ko03400 - - - DNA_pol_B_thumb,HHH_5,HHH_8 EH3_k127_8255790_5 1192124.LIG30_4201 3.11e-68 234.0 COG1881@1|root,COG1881@2|Bacteria,1N0Y4@1224|Proteobacteria,2VR39@28216|Betaproteobacteria,1K5JG@119060|Burkholderiaceae 28216|Betaproteobacteria S Phosphatidylethanolamine-binding protein - - - ko:K06910 - - - - ko00000 - - - PBP EH3_k127_8255790_7 909663.KI867150_gene893 4.489e-07 54.0 COG2930@1|root,COG2930@2|Bacteria,1RHV6@1224|Proteobacteria,42TN0@68525|delta/epsilon subdivisions,2WQ75@28221|Deltaproteobacteria,2MQM3@213462|Syntrophobacterales 28221|Deltaproteobacteria S Las17-binding protein actin regulator - - - - - - - - - - - - Ysc84 EH3_k127_8255790_1 640081.Dsui_0665 1.121e-165 529.0 COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,2VGZV@28216|Betaproteobacteria,2KUW9@206389|Rhodocyclales 206389|Rhodocyclales S Polyphosphate kinase 2 (PPK2) - - 2.7.4.1 ko:K22468 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PPK2 EH3_k127_8255790_6 158500.BV97_03183 4.075e-27 116.0 2DMJE@1|root,32RYR@2|Bacteria,1N7PS@1224|Proteobacteria,2UFEW@28211|Alphaproteobacteria,2K57K@204457|Sphingomonadales 204457|Sphingomonadales S Domain of unknown function (DUF4112) - - - - - - - - - - - - DUF4112 EH3_k127_8255790_2 1366050.N234_02065 3.635e-141 452.0 COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2VI5U@28216|Betaproteobacteria,1JZWP@119060|Burkholderiaceae 28216|Betaproteobacteria E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA ilvA - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - PALP,Thr_dehydrat_C EH3_k127_8267741_7 420324.KI911965_gene1316 3.063e-34 135.0 COG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,2TQY9@28211|Alphaproteobacteria 28211|Alphaproteobacteria S transport system fused permease components - - - - - - - - - - - - DUF3394,DctM EH3_k127_8267741_1 1268622.AVS7_02547 1.626e-163 521.0 COG2358@1|root,COG2358@2|Bacteria,1MXW1@1224|Proteobacteria,2VH6G@28216|Betaproteobacteria,4ABRZ@80864|Comamonadaceae 28216|Betaproteobacteria S NMT1-like family - - - ko:K07080 - - - - ko00000 - - - NMT1_3 EH3_k127_8267741_0 1265502.KB905932_gene1799 6.722e-209 658.0 COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2VJJ6@28216|Betaproteobacteria,4AAE9@80864|Comamonadaceae 28216|Betaproteobacteria H Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - - - - - - - - - - Aminotran_3 EH3_k127_8267741_6 1174528.JH992898_gene2276 6.185e-60 221.0 COG1409@1|root,COG1409@2|Bacteria,1G4KM@1117|Cyanobacteria 1117|Cyanobacteria S Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - - - - - - - - - - Metallophos EH3_k127_8267741_5 1123368.AUIS01000004_gene115 5.424e-119 420.0 COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,2NDJD@225057|Acidithiobacillales 225057|Acidithiobacillales T Diguanylate cyclase - - - - - - - - - - - - EAL,GAF_2,GGDEF,PAS_4,Response_reg EH3_k127_8267741_4 1095769.CAHF01000007_gene1669 2.459e-127 410.0 COG0684@1|root,COG0684@2|Bacteria,1MUWV@1224|Proteobacteria,2VIJI@28216|Betaproteobacteria 28216|Betaproteobacteria H demethylmenaquinone methyltransferase - - - - - - - - - - - - RraA-like EH3_k127_8267741_2 1123060.JONP01000001_gene1713 1.435e-153 490.0 COG0329@1|root,COG0329@2|Bacteria,1MWV5@1224|Proteobacteria,2TRE1@28211|Alphaproteobacteria,2JQ0J@204441|Rhodospirillales 204441|Rhodospirillales EM Dihydrodipicolinate synthetase family - - 4.3.3.7 ko:K01714 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R10147 RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS EH3_k127_8267741_8 420662.Mpe_A1032 1.326e-29 128.0 2CEXV@1|root,32S0S@2|Bacteria,1MZKB@1224|Proteobacteria,2VU8J@28216|Betaproteobacteria,1KMC0@119065|unclassified Burkholderiales 28216|Betaproteobacteria S Type II secretion system protein B gspB - - ko:K02451 - M00331 - - ko00000,ko00002,ko02044 9.B.42 - - T2SSB EH3_k127_8267741_3 420662.Mpe_A1031 3.439e-150 490.0 COG3267@1|root,COG3267@2|Bacteria,1MU3G@1224|Proteobacteria,2VIK1@28216|Betaproteobacteria,1KJ25@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Type II secretory pathway, component ExeA exeA - - ko:K02450 - M00331 - - ko00000,ko00002,ko02044 9.B.42 - - AAA_22,PG_binding_1 EH3_k127_8277644_9 1265503.KB905171_gene505 1.006e-25 119.0 COG2863@1|root,COG2863@2|Bacteria,1N2NB@1224|Proteobacteria,1RZFP@1236|Gammaproteobacteria,2Q646@267889|Colwelliaceae 1236|Gammaproteobacteria C Cytochrome c cc4 - - - - - - - - - - - Cytochrom_C EH3_k127_8277644_10 589924.Ferp_0648 1.195e-16 91.0 arCOG12382@1|root,arCOG12382@2157|Archaea 2157|Archaea - - - - - - - - - - - - - - - EH3_k127_8277644_7 28229.ND2E_2955 2.565e-32 139.0 COG2863@1|root,COG2863@2|Bacteria,1N2NB@1224|Proteobacteria,1RZFP@1236|Gammaproteobacteria,2Q646@267889|Colwelliaceae 1236|Gammaproteobacteria C Cytochrome c cc4 - - - - - - - - - - - Cytochrom_C EH3_k127_8277644_4 269799.Gmet_0326 3.039e-73 261.0 COG0437@1|root,COG0437@2|Bacteria,1MU1B@1224|Proteobacteria,42QZ2@68525|delta/epsilon subdivisions,2WMS4@28221|Deltaproteobacteria,43T2N@69541|Desulfuromonadales 28221|Deltaproteobacteria C 4Fe-4S dicluster domain - - - - - - - - - - - - Fer4,Fer4_11,Fer4_2,Fer4_3 EH3_k127_8277644_3 589924.Ferp_0646 7.365e-95 325.0 COG5557@1|root,arCOG02025@2157|Archaea,2XWFI@28890|Euryarchaeota 28890|Euryarchaeota C PFAM Polysulphide reductase, NrfD - - - ko:K00185 - - - - ko00000 5.A.3 - - NrfD EH3_k127_8277644_11 266809.PM03_10900 4.498e-16 91.0 COG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,2TSFV@28211|Alphaproteobacteria 28211|Alphaproteobacteria C cytochrome - - - ko:K17230 ko00920,ko01120,map00920,map01120 - R09499 - ko00000,ko00001 - - - Cytochrom_C,Cytochrome_CBB3 EH3_k127_8277644_8 391615.ABSJ01000033_gene698 1.232e-26 123.0 COG2863@1|root,COG2863@2|Bacteria,1MZU1@1224|Proteobacteria,1SBJR@1236|Gammaproteobacteria 1236|Gammaproteobacteria C cytochrome - - - - - - - - - - - - Cytochrom_C EH3_k127_8277644_5 1485545.JQLW01000012_gene1721 6.569e-53 196.0 293CN@1|root,2ZQV6@2|Bacteria,1RDZB@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - EH3_k127_8277644_1 290397.Adeh_1659 2.174e-146 478.0 COG3005@1|root,COG3005@2|Bacteria,1R956@1224|Proteobacteria,42Q0X@68525|delta/epsilon subdivisions,2WMHI@28221|Deltaproteobacteria 28221|Deltaproteobacteria C NapC/NirT cytochrome c family, N-terminal region - GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - - - - - - - - - - Cytochrom_NNT EH3_k127_8277644_12 1485544.JQKP01000005_gene289 1.394e-13 79.0 COG4654@1|root,COG4654@2|Bacteria,1N6UN@1224|Proteobacteria,2VW1Y@28216|Betaproteobacteria,44W1Q@713636|Nitrosomonadales 28216|Betaproteobacteria C Cytochrome C oxidase, cbb3-type, subunit III - GO:0005575,GO:0005623,GO:0042597,GO:0044464 - ko:K08738 ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00595 R10151 RC03151,RC03152 ko00000,ko00001,ko00002 3.D.4.6 - - Cytochrom_C,Cytochrome_CBB3 EH3_k127_8277644_13 580332.Slit_2291 4.44e-12 68.0 COG1918@1|root,COG1918@2|Bacteria,1NA6D@1224|Proteobacteria,2VY9N@28216|Betaproteobacteria,44W2B@713636|Nitrosomonadales 28216|Betaproteobacteria P FeoA - - - ko:K04758 - - - - ko00000,ko02000 - - - FeoA EH3_k127_8277644_0 243233.MCA1097 2.62e-201 645.0 COG0370@1|root,COG0370@2|Bacteria,1MUZC@1224|Proteobacteria,1RME9@1236|Gammaproteobacteria,1XENN@135618|Methylococcales 135618|Methylococcales P transporter of a GTP-driven Fe(2 ) uptake system - - - ko:K04759 - - - - ko00000,ko02000 9.A.8.1 - - FeoB_C,FeoB_N,Gate EH3_k127_8277644_6 1249627.D779_2949 4.277e-41 168.0 COG1394@1|root,COG1394@2|Bacteria,1RJ1P@1224|Proteobacteria,1S75D@1236|Gammaproteobacteria,1WYND@135613|Chromatiales 135613|Chromatiales C ATP synthase subunit D - - - ko:K02120 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_D EH3_k127_8277644_2 765912.Thimo_2263 3.031e-105 346.0 COG1156@1|root,COG1156@2|Bacteria,1R4RB@1224|Proteobacteria,1RQ6N@1236|Gammaproteobacteria,1WX18@135613|Chromatiales 135613|Chromatiales C Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit - - - ko:K02118 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_ab,ATP-synt_ab_N EH3_k127_8283031_0 94624.Bpet2239 0.0 1354.0 COG0145@1|root,COG0146@1|root,COG0145@2|Bacteria,COG0146@2|Bacteria,1MU2Y@1224|Proteobacteria,2VJUZ@28216|Betaproteobacteria,3T1HA@506|Alcaligenaceae 28216|Betaproteobacteria EQ 5-oxoprolinase oplaH - 3.5.2.9 ko:K01469 ko00480,map00480 - R00251 RC00553 ko00000,ko00001,ko01000 - - - Hydant_A_N,Hydantoinase_A,Hydantoinase_B EH3_k127_8283031_3 977880.RALTA_A1446 1.208e-134 437.0 COG1638@1|root,COG1638@2|Bacteria,1MVYB@1224|Proteobacteria,2VIQ9@28216|Betaproteobacteria,1KGTJ@119060|Burkholderiaceae 28216|Betaproteobacteria G Bacterial extracellular solute-binding protein, family 7 - - - - - - - - - - - - DctP EH3_k127_8283031_5 397945.Aave_3298 1.519e-52 190.0 COG3090@1|root,COG3090@2|Bacteria,1N01Z@1224|Proteobacteria 1224|Proteobacteria G transport system small permease component - - - - - - - - - - - - DctQ EH3_k127_8283031_1 397945.Aave_3299 2.455e-200 631.0 COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2VJME@28216|Betaproteobacteria,4ACFD@80864|Comamonadaceae 28216|Betaproteobacteria G Tripartite ATP-independent periplasmic transporter, DctM component - - - - - - - - - - - - DctM EH3_k127_8283031_2 381666.H16_A1505 1.988e-149 484.0 COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,2VH1D@28216|Betaproteobacteria,1K2HR@119060|Burkholderiaceae 28216|Betaproteobacteria E Dehydrogenase - - 1.4.5.1 ko:K00285 ko00360,map00360 - R01374,R09493 RC00006,RC00025 ko00000,ko00001,ko01000 - - - DAO,NAD_binding_8 EH3_k127_8283031_4 1434929.X946_2239 2.146e-104 353.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,2VJZD@28216|Betaproteobacteria,1K2RJ@119060|Burkholderiaceae 28216|Betaproteobacteria H Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration nnrD - 4.2.1.136 ko:K17758 - - - - ko00000,ko01000 - - - Carb_kinase,YjeF_N EH3_k127_8300832_2 1121035.AUCH01000013_gene3094 9.583e-124 405.0 COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2VHW2@28216|Betaproteobacteria,2KUYG@206389|Rhodocyclales 206389|Rhodocyclales C Respiratory-chain NADH dehydrogenase hoxF - 1.12.1.2 ko:K18005 - - - - ko00000,ko01000 - - - 2Fe-2S_thioredx,Complex1_51K,NADH_4Fe-4S,SLBB EH3_k127_8300832_4 757424.Hsero_2276 5.606e-66 233.0 COG1407@1|root,COG1407@2|Bacteria,1RC5G@1224|Proteobacteria,2VRFD@28216|Betaproteobacteria,47633@75682|Oxalobacteraceae 28216|Betaproteobacteria S Calcineurin-like phosphoesterase - - - ko:K06953 - - - - ko00000 - - - Metallophos,Metallophos_2 EH3_k127_8300832_5 1198452.Jab_1c16480 5.69e-24 114.0 COG3735@1|root,COG3735@2|Bacteria,1MVCW@1224|Proteobacteria,2VUME@28216|Betaproteobacteria 28216|Betaproteobacteria S TraB family - - - ko:K09973 - - - - ko00000 - - - TraB EH3_k127_8300832_0 1000565.METUNv1_00803 7.307e-256 818.0 COG0045@1|root,COG1042@1|root,COG1247@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,COG1247@2|Bacteria,1MW98@1224|Proteobacteria,2VI9R@28216|Betaproteobacteria,2KUDI@206389|Rhodocyclales 206389|Rhodocyclales CM Acyl-CoA synthetase (NDP forming) yfiQ - - ko:K09181 - - - - ko00000 - - - ATP-grasp_5,Acetyltransf_1,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig EH3_k127_8300832_6 1304275.C41B8_03032 1.795e-15 82.0 COG1734@1|root,COG1734@2|Bacteria,1NH80@1224|Proteobacteria,1SAW8@1236|Gammaproteobacteria 1236|Gammaproteobacteria T dksA traR - - - - - - - - - - - - zf-dskA_traR EH3_k127_8300832_1 1121033.AUCF01000011_gene1817 1.047e-135 443.0 COG0182@1|root,COG0182@2|Bacteria,1MUPM@1224|Proteobacteria,2TSPP@28211|Alphaproteobacteria,2JQQJ@204441|Rhodospirillales 204441|Rhodospirillales E Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) mtnA - 5.3.1.23 ko:K08963 ko00270,ko01100,map00270,map01100 M00034 R04420 RC01151 ko00000,ko00001,ko00002,ko01000 - - - IF-2B EH3_k127_8300832_3 1333998.M2A_2443 1.986e-68 254.0 COG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2U1NG@28211|Alphaproteobacteria,4BQ49@82117|unclassified Alphaproteobacteria 28211|Alphaproteobacteria G Class II Aldolase and Adducin N-terminal domain fucA - 4.1.2.17 ko:K01628 ko00051,ko01120,map00051,map01120 - R02262 RC00603,RC00604 ko00000,ko00001,ko01000 - - - Aldolase_II EH3_k127_8300832_7 1384054.N790_07890 2.705e-05 47.0 COG1937@1|root,COG1937@2|Bacteria,1NFTB@1224|Proteobacteria,1T084@1236|Gammaproteobacteria,1X8EH@135614|Xanthomonadales 135614|Xanthomonadales S Metal-sensitive transcriptional repressor - - - - - - - - - - - - Trns_repr_metal EH3_k127_8315088_3 1298867.AUES01000018_gene4117 2.346e-78 263.0 COG0387@1|root,COG0387@2|Bacteria,1N1MR@1224|Proteobacteria,2TVAP@28211|Alphaproteobacteria,3JRAG@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria P Sodium/calcium exchanger protein - - - ko:K07300 - - - - ko00000,ko02000 2.A.19 - - Na_Ca_ex EH3_k127_8315088_5 1449049.JONW01000008_gene520 5.835e-17 88.0 2E5SP@1|root,330H2@2|Bacteria,1Q9TH@1224|Proteobacteria,2UGZT@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - Gly-zipper_OmpA EH3_k127_8315088_0 1397528.Q671_16165 1.661e-300 940.0 COG3243@1|root,COG3243@2|Bacteria,1MUNE@1224|Proteobacteria,1RNZI@1236|Gammaproteobacteria 1236|Gammaproteobacteria I Protein of unknown function (DUF3141) - - - - - - - - - - - - DUF3141 EH3_k127_8315088_1 1454004.AW11_03031 8.704e-159 505.0 COG0280@1|root,COG0280@2|Bacteria,1QTXP@1224|Proteobacteria,2VJ4B@28216|Betaproteobacteria 28216|Betaproteobacteria C phosphate pta - 2.3.1.8 ko:K00625 ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200 M00357,M00579 R00230,R00921 RC00004,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000 - - - PTA_PTB EH3_k127_8315088_2 1458357.BG58_05620 1.157e-140 449.0 COG0623@1|root,COG0623@2|Bacteria,1MV05@1224|Proteobacteria,2VJQ0@28216|Betaproteobacteria,1JZNA@119060|Burkholderiaceae 28216|Betaproteobacteria I Enoyl- acyl-carrier-protein reductase NADH fabI_1 - 1.3.1.10,1.3.1.9 ko:K00208 ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212 M00083,M00572 R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671 RC00052,RC00076,RC00120 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 EH3_k127_8315088_4 1458357.BG58_09880 6.692e-36 143.0 2E56P@1|root,32ZZD@2|Bacteria,1PYIM@1224|Proteobacteria,2W0YN@28216|Betaproteobacteria,1KATT@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function (DUF3302) - - - - - - - - - - - - DUF3302 EH3_k127_8367608_3 1392838.AWNM01000031_gene20 1.617e-09 61.0 COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2VHCV@28216|Betaproteobacteria,3T3KV@506|Alcaligenaceae 28216|Betaproteobacteria E Extracellular solute-binding protein, family 5 middle family protein - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 EH3_k127_8367608_2 1095769.CAHF01000001_gene3563 2.298e-69 243.0 292MF@1|root,2ZQ5C@2|Bacteria,1RCYR@1224|Proteobacteria,2VRDD@28216|Betaproteobacteria,472PX@75682|Oxalobacteraceae 28216|Betaproteobacteria S Protein of unknown function (DUF3047) - - - - - - - - - - - - DUF3047 EH3_k127_8367608_1 391735.Veis_1099 1.35e-71 251.0 COG0697@1|root,COG0697@2|Bacteria,1R46X@1224|Proteobacteria,2VNGN@28216|Betaproteobacteria,4AJ8R@80864|Comamonadaceae 28216|Betaproteobacteria EG EamA-like transporter family - - - - - - - - - - - - EamA EH3_k127_8367608_0 948106.AWZT01000026_gene2360 7.467e-73 248.0 COG0686@1|root,COG0686@2|Bacteria,1QTX1@1224|Proteobacteria,2VHD1@28216|Betaproteobacteria,1K2VR@119060|Burkholderiaceae 28216|Betaproteobacteria C Belongs to the AlaDH PNT family ald - 1.4.1.1 ko:K00259 ko00250,ko00430,ko01100,map00250,map00430,map01100 - R00396 RC00008 ko00000,ko00001,ko01000 - - - AlaDh_PNT_C,AlaDh_PNT_N EH3_k127_8404028_1 1156919.QWC_29172 6.844e-57 206.0 COG1296@1|root,COG1296@2|Bacteria,1MVGN@1224|Proteobacteria,2VPFP@28216|Betaproteobacteria,3T286@506|Alcaligenaceae 28216|Betaproteobacteria E branched-chain amino acid permease (azaleucine resistance) azlC - - - - - - - - - - - AzlC EH3_k127_8404028_0 1123504.JQKD01000006_gene1576 1.858e-98 335.0 COG0477@1|root,COG2814@2|Bacteria,1MW59@1224|Proteobacteria,2VKPZ@28216|Betaproteobacteria,4AB3E@80864|Comamonadaceae 28216|Betaproteobacteria EGP Major facilitator superfamily - - - - - - - - - - - - MFS_1,Sugar_tr EH3_k127_8404028_2 1000565.METUNv1_00163 1.852e-32 143.0 COG0115@1|root,COG0115@2|Bacteria,1MVB0@1224|Proteobacteria,2VHR7@28216|Betaproteobacteria,2KUZJ@206389|Rhodocyclales 206389|Rhodocyclales E Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family ilvE - 2.6.1.42 ko:K00826 ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R10991 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 EH3_k127_8420614_3 335283.Neut_1641 3.75e-32 138.0 COG0755@1|root,COG0755@2|Bacteria,1MU61@1224|Proteobacteria,2VHF8@28216|Betaproteobacteria,3729C@32003|Nitrosomonadales 28216|Betaproteobacteria U Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes ccmC - - ko:K02195 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - Cytochrom_C_asm EH3_k127_8420614_1 323848.Nmul_A1216 1.974e-76 270.0 COG2386@1|root,COG2386@2|Bacteria,1NJB0@1224|Proteobacteria,2VNPU@28216|Betaproteobacteria,371Q1@32003|Nitrosomonadales 28216|Betaproteobacteria U Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes ccmB - - ko:K02194 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - CcmB EH3_k127_8420614_2 572477.Alvin_2174 1.655e-62 224.0 COG4133@1|root,COG4133@2|Bacteria,1MZPC@1224|Proteobacteria,1S3R2@1236|Gammaproteobacteria,1WXQD@135613|Chromatiales 135613|Chromatiales O once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system ccmA - 3.6.3.41 ko:K02193 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.107 - - ABC_tran EH3_k127_8420614_0 338969.Rfer_4081 4.033e-86 293.0 COG3637@1|root,COG3637@2|Bacteria,1RAS0@1224|Proteobacteria,2WHIG@28216|Betaproteobacteria 28216|Betaproteobacteria M Putative outer membrane beta-barrel porin, MtrB/PioB - - - - - - - - - - - - MtrB_PioB EH3_k127_8462556_0 742823.HMPREF9465_00300 1.172e-225 724.0 COG1053@1|root,COG1053@2|Bacteria,1MU5M@1224|Proteobacteria,2VHM6@28216|Betaproteobacteria,4PQQW@995019|Sutterellaceae 28216|Betaproteobacteria C Fumarate reductase flavoprotein C-term frdA - 1.3.5.4 ko:K00244 ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020 M00009,M00011,M00150,M00173 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C EH3_k127_8462556_2 765914.ThisiDRAFT_1965 8.988e-84 286.0 COG2009@1|root,2ZBTX@2|Bacteria,1RB22@1224|Proteobacteria,1S4JK@1236|Gammaproteobacteria 1236|Gammaproteobacteria C fumarate reductase respiratory complex transmembrane subunit - - - ko:K00246 ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020 M00009,M00011,M00150,M00173 R02164 RC00045 ko00000,ko00001,ko00002 - - - Sdh_cyt EH3_k127_8462556_1 290397.Adeh_2791 9.159e-165 522.0 COG0493@1|root,COG0543@1|root,COG1633@1|root,COG0493@2|Bacteria,COG0543@2|Bacteria,COG1633@2|Bacteria,1MU2H@1224|Proteobacteria,42MGY@68525|delta/epsilon subdivisions,2WKB4@28221|Deltaproteobacteria,2YTUD@29|Myxococcales 28221|Deltaproteobacteria C Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - 1.4.1.13,1.4.1.14 ko:K00266 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - Fer4_20,Pyr_redox_2 EH3_k127_8465761_2 379066.GAU_2403 1.983e-41 155.0 COG0838@1|root,COG0838@2|Bacteria,1ZUZ3@142182|Gemmatimonadetes 142182|Gemmatimonadetes C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain - - 1.6.5.3 ko:K00330 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q4 EH3_k127_8465761_1 338969.Rfer_0637 4.14e-48 176.0 COG2905@1|root,COG2905@2|Bacteria,1N7MU@1224|Proteobacteria,2VVGU@28216|Betaproteobacteria 28216|Betaproteobacteria T Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS EH3_k127_8465761_3 886379.AEWI01000014_gene1499 1.669e-34 134.0 COG1145@1|root,COG1145@2|Bacteria 2|Bacteria C 4fe-4S ferredoxin, iron-sulfur binding domain protein fdxB - - ko:K03522,ko:K05337 - - - - ko00000,ko04147 - - - Fer4,HTH_3,HTH_31 EH3_k127_8465761_0 1191523.MROS_2662 1.79e-79 271.0 COG0167@1|root,COG0167@2|Bacteria 2|Bacteria F dihydroorotate dehydrogenase activity - - 1.3.98.1 ko:K00226 ko00240,ko01100,map00240,map01100 M00051 R01867 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh EH3_k127_8516457_0 748247.AZKH_0413 8.873e-212 665.0 COG1541@1|root,COG1541@2|Bacteria,1MV1W@1224|Proteobacteria,2VI46@28216|Betaproteobacteria,2KVJW@206389|Rhodocyclales 206389|Rhodocyclales H Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) paaK - 6.2.1.30 ko:K01912 ko00360,ko01120,ko05111,map00360,map01120,map05111 - R02539 RC00004,RC00014 ko00000,ko00001,ko01000 - - - AMP-binding,AMP-binding_C_2 EH3_k127_8516457_4 748247.AZKH_0412 1.165e-48 178.0 COG2050@1|root,COG2050@2|Bacteria,1RH35@1224|Proteobacteria,2VRC2@28216|Betaproteobacteria,2KWSU@206389|Rhodocyclales 206389|Rhodocyclales Q phenylacetic acid degradation protein paaI - - ko:K02614 ko00360,map00360 - R09840 RC00004,RC00014 ko00000,ko00001,ko01000 - - - 4HBT EH3_k127_8516457_1 62928.azo3040 3.124e-170 548.0 COG1250@1|root,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2VK75@28216|Betaproteobacteria,2KVQR@206389|Rhodocyclales 28216|Betaproteobacteria I 3-hydroxyacyl-CoA dehydrogenase - - 1.1.1.157 ko:K00074 ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120 - R01976,R05576,R06941 RC00029,RC00117 ko00000,ko00001,ko01000 - - - 3HCDH,3HCDH_N EH3_k127_8516457_3 748247.AZKH_0410 3.122e-111 369.0 COG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,2VHE9@28216|Betaproteobacteria,2KUU2@206389|Rhodocyclales 206389|Rhodocyclales I Belongs to the enoyl-CoA hydratase isomerase family - - 5.3.3.18 ko:K15866 ko00360,ko01120,map00360,map01120 - R09837,R09839 RC00004,RC00326,RC02689,RC03003 ko00000,ko00001,ko01000 - - - ECH_1 EH3_k127_8516457_2 748247.AZKH_0409 1.622e-112 368.0 COG1012@1|root,COG1012@2|Bacteria,1MY4N@1224|Proteobacteria,2VH9F@28216|Betaproteobacteria,2KUYJ@206389|Rhodocyclales 206389|Rhodocyclales C phenylacetic acid degradation protein paaN paaZ - - - - - - - - - - - Aldedh EH3_k127_8532910_0 469610.HMPREF0189_00019 7.925e-193 612.0 COG0706@1|root,COG0706@2|Bacteria,1MV5M@1224|Proteobacteria,2VHIA@28216|Betaproteobacteria,1KK1B@119065|unclassified Burkholderiales 28216|Betaproteobacteria U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins yidC - - ko:K03217 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP,YidC_periplas EH3_k127_8532910_4 742823.HMPREF9465_00669 1.574e-08 64.0 2F5JP@1|root,33Y4X@2|Bacteria,1NX1V@1224|Proteobacteria,2W2V3@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - EH3_k127_8532910_1 267608.RSc0005 7.915e-176 562.0 COG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,2VHCJ@28216|Betaproteobacteria,1JZXE@119060|Burkholderiaceae 28216|Betaproteobacteria J Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 mnmE - - ko:K03650 - - R08701 RC00053,RC00209,RC00870 ko00000,ko01000,ko03016 - - - MMR_HSR1,MnmE_helical,TrmE_N EH3_k127_8532910_2 1120971.AUCA01000084_gene1158 7.711e-50 178.0 COG0286@1|root,COG0286@2|Bacteria,1TPGZ@1239|Firmicutes,4HA1J@91061|Bacilli,279KY@186823|Alicyclobacillaceae 91061|Bacilli L HsdM N-terminal domain hsdM - 2.1.1.72 ko:K03427 - - - - ko00000,ko01000,ko02048 - - - HsdM_N,N6_Mtase EH3_k127_8532910_3 262724.TT_P0211 1.278e-13 72.0 COG1373@1|root,COG1373@2|Bacteria,1WJIW@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S AAA domain - - - ko:K07133 - - - - ko00000 - - - AAA_14,DUF4143 EH3_k127_8539607_0 742821.HMPREF9464_01992 8.24e-71 243.0 COG0008@1|root,COG0008@2|Bacteria,1MUN7@1224|Proteobacteria,2VHYK@28216|Betaproteobacteria,4PQF7@995019|Sutterellaceae 28216|Betaproteobacteria J Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon gluQ - - ko:K01894 - - - - ko00000,ko01000,ko01007,ko03016 - - - tRNA-synt_1c EH3_k127_8539607_1 317025.Tcr_1931 1.649e-52 211.0 COG2202@1|root,COG3290@1|root,COG3829@1|root,COG5001@1|root,COG2202@2|Bacteria,COG3290@2|Bacteria,COG3829@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,45ZS0@72273|Thiotrichales 72273|Thiotrichales T Diguanylate cyclase phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,PAS_9 EH3_k127_8572006_1 395494.Galf_1138 1.15e-163 523.0 COG0111@1|root,COG0111@2|Bacteria,1MU5Z@1224|Proteobacteria,2VIHG@28216|Betaproteobacteria,44V68@713636|Nitrosomonadales 28216|Betaproteobacteria C D-isomer specific 2-hydroxyacid dehydrogenase catalytic region serA - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C EH3_k127_8572006_0 396588.Tgr7_1594 2.236e-242 754.0 COG1350@1|root,COG1350@2|Bacteria,1N07Y@1224|Proteobacteria,1RMGK@1236|Gammaproteobacteria,1WWHA@135613|Chromatiales 135613|Chromatiales E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine - - 4.2.1.20 ko:K06001 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP EH3_k127_8572006_2 1123256.KB907931_gene2750 3.441e-69 242.0 COG2846@1|root,COG2846@2|Bacteria,1MVCQ@1224|Proteobacteria,1RPY6@1236|Gammaproteobacteria,1X8FH@135614|Xanthomonadales 135614|Xanthomonadales D Domain of Unknown function (DUF542) - - - - - - - - - - - - Hemerythrin,ScdA_N EH3_k127_8572006_3 709797.CSIRO_1195 5.407e-45 166.0 COG2358@1|root,COG2358@2|Bacteria,1MXW1@1224|Proteobacteria,2TSK2@28211|Alphaproteobacteria,3JSVJ@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S NMT1-like family - - - ko:K07080 - - - - ko00000 - - - NMT1_3 EH3_k127_8589209_1 1235457.C404_12450 1.025e-103 364.0 COG0159@1|root,COG0159@2|Bacteria,1MXJV@1224|Proteobacteria,2VI78@28216|Betaproteobacteria,1K2CE@119060|Burkholderiaceae 28216|Betaproteobacteria E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate trpA - 4.2.1.20 ko:K01695 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - Trp_syntA EH3_k127_8589209_0 391038.Bphy_4374 5.126e-227 714.0 COG0133@1|root,COG0133@2|Bacteria,1MUS8@1224|Proteobacteria,2VHV3@28216|Betaproteobacteria,1JZSI@119060|Burkholderiaceae 28216|Betaproteobacteria E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine trpB GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 ko:K01696 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP EH3_k127_8589209_3 1538295.JY96_18075 7.924e-67 239.0 COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,2VPZV@28216|Betaproteobacteria,1KK51@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Belongs to the TrpF family trpF - 5.3.1.24 ko:K01817 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03509 RC00945 ko00000,ko00001,ko00002,ko01000 - - - PRAI EH3_k127_8589209_2 640081.Dsui_3194 1.904e-98 329.0 COG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,2VI0R@28216|Betaproteobacteria,2KU8S@206389|Rhodocyclales 206389|Rhodocyclales J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs truA - 5.4.99.12 ko:K06173 - - - - ko00000,ko01000,ko03016 - - - PseudoU_synth_1 EH3_k127_8589209_4 247634.GPB2148_3746 1.48e-05 56.0 COG3170@1|root,COG3170@2|Bacteria,1MXV7@1224|Proteobacteria,1RMM5@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU COG3170 Tfp pilus assembly protein FimV fimV - - ko:K08086 - - - - ko00000 - - - LysM,TPR_19 EH3_k127_8601367_3 426114.THI_0809 1.545e-100 331.0 COG1228@1|root,COG1228@2|Bacteria,1MUYR@1224|Proteobacteria,2VK8A@28216|Betaproteobacteria,1KN18@119065|unclassified Burkholderiales 28216|Betaproteobacteria F Amidohydrolase family hutI - 3.5.2.7 ko:K01468 ko00340,ko01100,map00340,map01100 M00045 R02288 RC00683 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1,Amidohydro_3 EH3_k127_8601367_2 426114.THI_0810 4.641e-116 389.0 COG3741@1|root,COG3741@2|Bacteria,1MY4D@1224|Proteobacteria,2VK2Y@28216|Betaproteobacteria,1KKNY@119065|unclassified Burkholderiales 28216|Betaproteobacteria E N-formylglutamate amidohydrolase hutG - 3.5.1.68,3.5.3.8 ko:K01458,ko:K01479 ko00340,ko00630,ko01100,map00340,map00630,map01100 M00045 R00525,R02285 RC00165,RC00221,RC00323,RC00681 ko00000,ko00001,ko00002,ko01000 - - - FGase EH3_k127_8601367_0 426114.THI_0811 1.044e-188 600.0 COG0402@1|root,COG0402@2|Bacteria,1MUFE@1224|Proteobacteria,2VH0A@28216|Betaproteobacteria,1KNEI@119065|unclassified Burkholderiales 28216|Betaproteobacteria F Amidohydrolase family hutF - 3.5.3.13 ko:K05603 ko00340,map00340 - R02286 RC00682 ko00000,ko00001,ko01000 - - - Amidohydro_1 EH3_k127_8601367_1 1211115.ALIQ01000078_gene4127 9.737e-156 503.0 COG1593@1|root,COG1593@2|Bacteria,1MUQE@1224|Proteobacteria,2TSSE@28211|Alphaproteobacteria,3NANS@45404|Beijerinckiaceae 28211|Alphaproteobacteria G Malonyl-CoA decarboxylase N-terminal domain matA - 4.1.1.9 ko:K01578 ko00410,ko00640,ko01100,ko04146,ko04152,map00410,map00640,map01100,map04146,map04152 - R00233 RC00040 ko00000,ko00001,ko01000 - - - MCD,MCD_N EH3_k127_8601367_4 29581.BW37_05404 4.775e-95 319.0 COG0451@1|root,COG0451@2|Bacteria,1MWVJ@1224|Proteobacteria,2VJ3T@28216|Betaproteobacteria,473J1@75682|Oxalobacteraceae 28216|Betaproteobacteria GM RmlD substrate binding domain yeeZ - - - - - - - - - - - Epimerase,NAD_binding_10,RmlD_sub_bind,TrkA_N EH3_k127_8601367_5 1175306.GWL_27360 2.334e-16 80.0 COG0543@1|root,COG1018@1|root,COG0543@2|Bacteria,COG1018@2|Bacteria,1MV72@1224|Proteobacteria,2VI9K@28216|Betaproteobacteria,47360@75682|Oxalobacteraceae 28216|Betaproteobacteria C Oxidoreductase FAD-binding domain ascD - 1.17.1.1 ko:K00523 ko00520,map00520 - R03391,R03392 RC00230 ko00000,ko00001,ko01000 - - - FAD_binding_6,Fer2,NAD_binding_1 EH3_k127_8649754_0 420662.Mpe_A0903 1.499e-128 413.0 COG1703@1|root,COG1884@1|root,COG2185@1|root,COG1703@2|Bacteria,COG1884@2|Bacteria,COG2185@2|Bacteria,1MUXX@1224|Proteobacteria,2VH05@28216|Betaproteobacteria,1KJWN@119065|unclassified Burkholderiales 28216|Betaproteobacteria EI Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly icmF GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 ko:K11942 - - - - ko00000,ko01000 - - - ArgK,B12-binding,MM_CoA_mutase EH3_k127_8649754_2 1117647.M5M_15035 7.696e-53 209.0 COG0457@1|root,COG2199@1|root,COG0457@2|Bacteria,COG3706@2|Bacteria,1MZV7@1224|Proteobacteria,1RZRN@1236|Gammaproteobacteria,1JB5Y@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria T Tetratricopeptide repeat - - - - - - - - - - - - GGDEF,TPR_12,TPR_7 EH3_k127_8649754_1 371731.Rsw2DRAFT_0866 1.54e-109 370.0 COG0661@1|root,COG0661@2|Bacteria,1MW1J@1224|Proteobacteria,2TSHG@28211|Alphaproteobacteria,1FB5Z@1060|Rhodobacter 28211|Alphaproteobacteria S ABC1 family - - - - - - - - - - - - ABC1 EH3_k127_8649754_3 243233.MCA2787 1.11e-48 182.0 COG0695@1|root,COG0695@2|Bacteria,1QVSK@1224|Proteobacteria,1T3G3@1236|Gammaproteobacteria,1XDZF@135618|Methylococcales 135618|Methylococcales O PFAM glutaredoxin - - - - - - - - - - - - Glutaredoxin EH3_k127_8685344_2 159087.Daro_0113 0.0001315 44.0 COG0768@1|root,COG0768@2|Bacteria,1MV8C@1224|Proteobacteria,2VHBZ@28216|Betaproteobacteria,2KUYH@206389|Rhodocyclales 206389|Rhodocyclales M Catalyzes cross-linking of the peptidoglycan cell wall mrdA - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase EH3_k127_8685344_0 640081.Dsui_0892 4.889e-147 475.0 COG0772@1|root,COG0772@2|Bacteria,1MUK3@1224|Proteobacteria,2VH8Q@28216|Betaproteobacteria,2KURV@206389|Rhodocyclales 206389|Rhodocyclales M Peptidoglycan polymerase that is essential for cell wall elongation mrdB - - ko:K05837 - - - - ko00000,ko03036 - - - FTSW_RODA_SPOVE EH3_k127_8685344_1 1121035.AUCH01000008_gene1096 2.263e-79 292.0 COG0797@1|root,COG0797@2|Bacteria,1MZ8S@1224|Proteobacteria,2VJAN@28216|Betaproteobacteria,2KUPW@206389|Rhodocyclales 206389|Rhodocyclales DM Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides rlpA - - ko:K03642 - - - - ko00000 - - - DPBB_1,SPOR EH3_k127_8745960_2 879212.DespoDRAFT_01720 4.559e-35 136.0 COG0463@1|root,COG0463@2|Bacteria,1PVP4@1224|Proteobacteria,42M23@68525|delta/epsilon subdivisions,2WNU9@28221|Deltaproteobacteria,2MJ8C@213118|Desulfobacterales 28221|Deltaproteobacteria M Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 EH3_k127_8745960_1 795666.MW7_1662 9.807e-37 156.0 COG3307@1|root,COG3307@2|Bacteria,1R495@1224|Proteobacteria,2VWVH@28216|Betaproteobacteria,1K0IR@119060|Burkholderiaceae 28216|Betaproteobacteria M O-Antigen ligase - - - - - - - - - - - - Wzy_C EH3_k127_8745960_0 123899.JPQP01000004_gene322 6.831e-58 214.0 COG0859@1|root,COG0859@2|Bacteria,1PMN2@1224|Proteobacteria,2VTS5@28216|Betaproteobacteria,3T1S8@506|Alcaligenaceae 28216|Betaproteobacteria M heptosyltransferase waaF - - ko:K02843 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 EH3_k127_8745960_3 546274.EIKCOROL_00687 1.359e-20 102.0 COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2VHAN@28216|Betaproteobacteria,2KPC3@206351|Neisseriales 206351|Neisseriales V Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation msbA - - ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106 - - ABC_membrane,ABC_tran EH3_k127_8805645_2 94624.Bpet3736 3.262e-07 52.0 COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1MW7X@1224|Proteobacteria,2VMDX@28216|Betaproteobacteria,3T7U9@506|Alcaligenaceae 28216|Betaproteobacteria L DDE superfamily endonuclease - - - - - - - - - - - - DDE_3,HTH_23,HTH_32 EH3_k127_8805645_0 156889.Mmc1_1517 1.216e-225 712.0 COG0297@1|root,COG0297@2|Bacteria,1MUGM@1224|Proteobacteria,2TT73@28211|Alphaproteobacteria 2|Bacteria G Synthesizes alpha-1,4-glucan chains using ADP-glucose glgA GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5,Glycos_transf_1 EH3_k127_8805645_1 765912.Thimo_2911 1.659e-161 541.0 COG1449@1|root,COG1449@2|Bacteria,1R3Z3@1224|Proteobacteria,1RNRC@1236|Gammaproteobacteria,1WVY7@135613|Chromatiales 135613|Chromatiales G Belongs to the glycosyl hydrolase 57 family - - - - - - - - - - - - Glyco_hydro_57 EH3_k127_891459_0 76114.ebA3559 6.666e-166 529.0 COG0411@1|root,COG4177@1|root,COG0411@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2VH2P@28216|Betaproteobacteria,2KUY7@206389|Rhodocyclales 206389|Rhodocyclales P Belongs to the binding-protein-dependent transport system permease family - - - ko:K01995,ko:K01998 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - ABC_tran,BCA_ABC_TP_C,BPD_transp_2 EH3_k127_891459_1 62928.azo0312 4.048e-148 477.0 COG0559@1|root,COG0559@2|Bacteria,1MXMC@1224|Proteobacteria,2VJ1Y@28216|Betaproteobacteria,2KUY3@206389|Rhodocyclales 206389|Rhodocyclales U Belongs to the binding-protein-dependent transport system permease family - - - ko:K01997 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - BPD_transp_2 EH3_k127_891459_2 62928.azo0311 1.037e-132 426.0 COG0683@1|root,COG0683@2|Bacteria,1MXR4@1224|Proteobacteria,2VHP9@28216|Betaproteobacteria,2KVKD@206389|Rhodocyclales 206389|Rhodocyclales E amino acid - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 EH3_k127_915429_0 1095769.CAHF01000005_gene1511 6.435e-291 899.0 COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2VI77@28216|Betaproteobacteria,47381@75682|Oxalobacteraceae 28216|Betaproteobacteria I Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) accB - 6.4.1.4 ko:K01969 ko00280,ko01100,map00280,map01100 M00036 R04138 RC00367,RC00942 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans EH3_k127_915429_1 420662.Mpe_A1621 2.193e-130 428.0 COG0477@1|root,COG2814@2|Bacteria,1MVSH@1224|Proteobacteria,2VKJ3@28216|Betaproteobacteria,1KIWH@119065|unclassified Burkholderiales 28216|Betaproteobacteria EGP Sugar (and other) transporter - - - ko:K08151 - M00668 - - ko00000,ko00002,ko01504,ko02000 2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75 - - MFS_1 EH3_k127_915429_2 251229.Chro_4001 1.821e-19 89.0 COG0625@1|root,COG0625@2|Bacteria,1G34I@1117|Cyanobacteria,3VHY7@52604|Pleurocapsales 1117|Cyanobacteria O Glutathione S-transferase, C-terminal domain - - 2.5.1.18 ko:K00799,ko:K11209 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_N,GST_N_3 EH3_k127_949562_1 629265.PMA4326_23076 6.751e-119 390.0 COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,1S1KY@1236|Gammaproteobacteria,1Z535@136849|Pseudomonas syringae group 1236|Gammaproteobacteria M Mycolic acid cyclopropane synthetase cfa2 - 2.1.1.79 ko:K00574 - - - - ko00000,ko01000 - - - CMAS EH3_k127_949562_2 502025.Hoch_5996 5.351e-96 334.0 COG1075@1|root,COG1075@2|Bacteria,1QTCH@1224|Proteobacteria,437VW@68525|delta/epsilon subdivisions,2WYPR@28221|Deltaproteobacteria,2YUCF@29|Myxococcales 28221|Deltaproteobacteria S acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - - - - - - - - - - - EH3_k127_949562_0 864051.BurJ1DRAFT_4925 1.231e-140 468.0 COG1505@1|root,COG1505@2|Bacteria,1NZ7N@1224|Proteobacteria,2VPBK@28216|Betaproteobacteria,1KNCC@119065|unclassified Burkholderiales 28216|Betaproteobacteria M Prolyl oligopeptidase, N-terminal beta-propeller domain - - 3.4.21.26 ko:K01322 ko04614,map04614 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N EH3_k127_95820_14 572477.Alvin_1965 5.889e-71 247.0 COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,1RMTU@1236|Gammaproteobacteria,1WWNR@135613|Chromatiales 135613|Chromatiales M Belongs to the NAD(P)-dependent epimerase dehydratase family - - 5.1.3.2,5.1.3.5 ko:K01784,ko:K12448 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R01473,R02984 RC00289,RC00528 ko00000,ko00001,ko00002,ko01000 - - - Epimerase EH3_k127_95820_7 768671.ThimaDRAFT_0417 1.85e-153 492.0 COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,1RNJD@1236|Gammaproteobacteria,1WX9A@135613|Chromatiales 135613|Chromatiales GM PFAM NAD-dependent epimerase dehydratase - - 4.1.1.35 ko:K08678 ko00520,ko01100,map00520,map01100 M00361 R01384 RC00508 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd EH3_k127_95820_6 1265502.KB905930_gene1503 5.718e-158 505.0 COG3173@1|root,COG3173@2|Bacteria,1MWAK@1224|Proteobacteria,2VJ31@28216|Betaproteobacteria,4A9R4@80864|Comamonadaceae 28216|Betaproteobacteria S Aminoglycoside phosphotransferase - - - - - - - - - - - - APH EH3_k127_95820_15 1349767.GJA_2097 6.834e-65 240.0 COG0406@1|root,COG0406@2|Bacteria,1R62X@1224|Proteobacteria,2VKQ1@28216|Betaproteobacteria,473DI@75682|Oxalobacteraceae 28216|Betaproteobacteria G Phosphoglycerate mutase family - - - - - - - - - - - - His_Phos_1 EH3_k127_95820_10 522306.CAP2UW1_1618 1.166e-104 367.0 COG1804@1|root,COG1804@2|Bacteria,1MW1H@1224|Proteobacteria,2VJBJ@28216|Betaproteobacteria 28216|Betaproteobacteria C L-carnitine dehydratase bile acid-inducible protein F - - - - - - - - - - - - CoA_transf_3 EH3_k127_95820_2 742823.HMPREF9465_01617 4.019e-247 777.0 COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2VHGH@28216|Betaproteobacteria,4PQM8@995019|Sutterellaceae 28216|Betaproteobacteria S ABC transporter C-terminal domain - - - ko:K06158 - - - - ko00000,ko03012 - - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn EH3_k127_95820_11 1095769.CAHF01000011_gene2256 5.551e-104 346.0 COG2890@1|root,COG2890@2|Bacteria,1MX8Q@1224|Proteobacteria,2VIPK@28216|Betaproteobacteria,4724G@75682|Oxalobacteraceae 28216|Betaproteobacteria J Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue prmB - 2.1.1.298 ko:K07320 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03009 - - - MTS EH3_k127_95820_5 1392838.AWNM01000071_gene686 2.433e-163 523.0 COG0624@1|root,COG0624@2|Bacteria,1MW6G@1224|Proteobacteria,2VHRF@28216|Betaproteobacteria,3T1MH@506|Alcaligenaceae 28216|Betaproteobacteria E Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls dapE - 3.5.1.18 ko:K01439 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R02734 RC00064,RC00090 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20 EH3_k127_95820_8 883126.HMPREF9710_02342 1.869e-145 470.0 COG5008@1|root,COG5008@2|Bacteria,1QTTX@1224|Proteobacteria,2VHU7@28216|Betaproteobacteria,473F3@75682|Oxalobacteraceae 28216|Betaproteobacteria NU Type II/IV secretion system protein pilT2 - - ko:K02670 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE EH3_k127_95820_9 1538295.JY96_01560 3.764e-132 432.0 COG2171@1|root,COG2171@2|Bacteria,1MU0Y@1224|Proteobacteria,2VHUX@28216|Betaproteobacteria,1KJWR@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Belongs to the transferase hexapeptide repeat family dapD - 2.3.1.117 ko:K00674 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R04365 RC00004,RC01136 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,Hexapep_2,THDPS_N_2 EH3_k127_95820_4 305700.B447_05178 3.1e-167 536.0 COG0436@1|root,COG0436@2|Bacteria,1MWS8@1224|Proteobacteria,2VIEP@28216|Betaproteobacteria,2KVDP@206389|Rhodocyclales 206389|Rhodocyclales E PFAM Aminotransferase class I and II dapC - 2.6.1.17 ko:K14267 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R04475 RC00006 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 EH3_k127_95820_16 469610.HMPREF0189_01871 1.607e-61 214.0 COG0780@1|root,COG0780@2|Bacteria,1MW0M@1224|Proteobacteria,2W9FK@28216|Betaproteobacteria,1KKMT@119065|unclassified Burkholderiales 28216|Betaproteobacteria H Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) queF - 1.7.1.13 ko:K09457 ko00790,ko01100,map00790,map01100 - R07605 RC01875 ko00000,ko00001,ko01000,ko03016 - - - QueF EH3_k127_95820_0 1095769.CAHF01000011_gene2250 0.0 1101.0 COG1196@1|root,COG1196@2|Bacteria,1MUAQ@1224|Proteobacteria,2VJMF@28216|Betaproteobacteria,473PX@75682|Oxalobacteraceae 28216|Betaproteobacteria D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N,SMC_hinge EH3_k127_95820_17 395495.Lcho_2513 7.635e-17 92.0 COG3115@1|root,COG3115@2|Bacteria,1NJ6D@1224|Proteobacteria,2VHQ7@28216|Betaproteobacteria,1KK6I@119065|unclassified Burkholderiales 28216|Betaproteobacteria D Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins zipA - - - - - - - - - - - ZipA_C EH3_k127_95820_1 388051.AUFE01000007_gene1443 3.381e-285 893.0 COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,2VIDE@28216|Betaproteobacteria,1K0GW@119060|Burkholderiaceae 28216|Betaproteobacteria L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA - 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 EH3_k127_95820_12 62928.azo1998 1.316e-96 321.0 COG0005@1|root,COG0005@2|Bacteria,1MUWW@1224|Proteobacteria,2VJQQ@28216|Betaproteobacteria,2KV4J@206389|Rhodocyclales 206389|Rhodocyclales F Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage - - 2.4.2.28 ko:K00772 ko00270,ko01100,map00270,map01100 M00034 R01402 RC00063,RC02819 ko00000,ko00001,ko00002,ko01000 - - - PNP_UDP_1 EH3_k127_95820_13 365046.Rta_20400 4.518e-81 281.0 COG0242@1|root,COG0242@2|Bacteria,1R9XK@1224|Proteobacteria,2VQ0U@28216|Betaproteobacteria,4A9KP@80864|Comamonadaceae 28216|Betaproteobacteria J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions def2 - 3.5.1.88 ko:K01462 - - - - ko00000,ko01000 - - - Pep_deformylase EH3_k127_95820_3 1095769.CAHF01000011_gene2241 1.51e-207 657.0 COG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,2VI2G@28216|Betaproteobacteria,472BY@75682|Oxalobacteraceae 28216|Betaproteobacteria O Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen glnD - 2.7.7.59 ko:K00990 ko02020,map02020 - - - ko00000,ko00001,ko01000 - - - ACT,GlnD_UR_UTase,HD,NTP_transf_2 ## 2266 queries scanned ## Total time (seconds): 37.546687602996826 ## Rate: 60.35 q/s