## Mon Mar 17 06:38:38 2025 ## emapper-2.1.9 ## /home/zhangkaihang/.conda/envs/eggnog-mapper/bin/emapper.py -i /home/zhangkaihang/metadata_analysis/metawrap/paddysoil/4paddy/bin4gtdbtk/QTD2_bin.12.fa -m mmseqs --itype genome -o QTD2_bin.12 --output_dir /home/zhangkaihang/metadata_analysis/eggnog-mapper/paddysoil/4paddy/QTD2_bin.12 --cpu 8 ## #query seed_ortholog evalue score eggNOG_OGs max_annot_lvl COG_category Description Preferred_name GOs EC KEGG_ko KEGG_Pathway KEGG_Module KEGG_Reaction KEGG_rclass BRITE KEGG_TC CAZy BiGG_Reaction PFAMs QTD2_k127_102520_4 1121937.AUHJ01000020_gene1283 4.024e-11 64.0 COG5487@1|root,COG5487@2|Bacteria,1PCW4@1224|Proteobacteria,1T6EH@1236|Gammaproteobacteria,46CAM@72275|Alteromonadaceae 1236|Gammaproteobacteria S Protein of unknown function (DUF1328) - - - - - - - - - - - - DUF1328 QTD2_k127_102520_3 234267.Acid_3720 2.959e-17 84.0 COG3237@1|root,COG3237@2|Bacteria,3Y8EX@57723|Acidobacteria 57723|Acidobacteria S CsbD-like - - - - - - - - - - - - CsbD QTD2_k127_102520_2 1005999.GLGR_2286 1.623e-21 102.0 COG2823@1|root,COG2823@2|Bacteria,1PCIJ@1224|Proteobacteria,1RRGP@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Periplasmic or secreted lipoprotein osmY GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - ko:K04065 - - - - ko00000 - - - BON QTD2_k127_102520_1 330214.NIDE3859 4.397e-63 220.0 COG0071@1|root,COG0071@2|Bacteria,3J0TV@40117|Nitrospirae 40117|Nitrospirae O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 QTD2_k127_102520_0 330214.NIDE3585 5.227e-64 222.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HATPase_c,HisKA,PAS,PIG-L,Response_reg QTD2_k127_105980_1 330214.NIDE3884 2.601e-77 261.0 COG2041@1|root,COG2041@2|Bacteria 2|Bacteria V Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide sorA - - ko:K07147 - - - - ko00000,ko01000 - - - Mo-co_dimer,Oxidored_molyb QTD2_k127_105980_2 330214.NIDE3883 8.059e-72 248.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - ko:K00406 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrome_CBB3 QTD2_k127_105980_0 330214.NIDE3882 2.979e-156 496.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - ko:K12263 - - - - ko00000 - - - Cytochrome_CBB3,SirB QTD2_k127_1079137_2 1125863.JAFN01000001_gene322 6.157e-77 265.0 COG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,42MRN@68525|delta/epsilon subdivisions,2WJCH@28221|Deltaproteobacteria 28221|Deltaproteobacteria M PFAM NAD-dependent epimerase dehydratase - - 5.1.3.2,5.1.3.7 ko:K01784,ko:K02473 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R00418,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd QTD2_k127_1079137_0 335543.Sfum_3127 1.505e-210 664.0 COG1032@1|root,COG1032@2|Bacteria,1MWR0@1224|Proteobacteria,42QFH@68525|delta/epsilon subdivisions,2WKWR@28221|Deltaproteobacteria,2MREA@213462|Syntrophobacterales 28221|Deltaproteobacteria C SMART Elongator protein 3 MiaB NifB hpnJ - - - - - - - - - - - B12-binding,Radical_SAM QTD2_k127_1079137_4 335543.Sfum_3125 1.895e-17 88.0 COG2510@1|root,COG2510@2|Bacteria 2|Bacteria EG membrane - - - ko:K08978 - - - - ko00000,ko02000 2.A.7.2 - - EamA QTD2_k127_1079137_3 335543.Sfum_3124 1.271e-31 134.0 COG0697@1|root,COG0697@2|Bacteria 2|Bacteria EG spore germination - - - - - - - - - - - - EamA QTD2_k127_1079137_1 298653.Franean1_6657 2.529e-127 418.0 COG0399@1|root,COG0399@2|Bacteria,2GKD7@201174|Actinobacteria,4ESWQ@85013|Frankiales 201174|Actinobacteria E Belongs to the DegT DnrJ EryC1 family - - - - - - - - - - - - DegT_DnrJ_EryC1 QTD2_k127_1079137_5 106370.Francci3_0224 1.637e-13 75.0 COG0451@1|root,COG0451@2|Bacteria,2GK8K@201174|Actinobacteria 201174|Actinobacteria GM Epimerase dehydratase - - 5.1.3.2,5.1.3.25 ko:K01784,ko:K17947 ko00052,ko00520,ko00523,ko01100,ko01130,map00052,map00520,map00523,map01100,map01130 M00361,M00362,M00632 R00291,R02984,R10279 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd QTD2_k127_1092180_7 234267.Acid_7636 2.668e-31 134.0 COG0515@1|root,COG0823@1|root,COG0515@2|Bacteria,COG0823@2|Bacteria,3Y333@57723|Acidobacteria 57723|Acidobacteria KLTU Involved in the tonB-independent uptake of proteins - - - - - - - - - - - - PD40,Pkinase QTD2_k127_1092180_6 330214.NIDE1923 4.049e-38 149.0 COG1073@1|root,COG1073@2|Bacteria 2|Bacteria S thiolester hydrolase activity - GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - ko:K07100 - - - - ko00000 - - - DLH,Pribosyltran QTD2_k127_1092180_3 330214.NIDE1925 1.932e-60 212.0 COG0589@1|root,COG0589@2|Bacteria,3J1E9@40117|Nitrospirae 40117|Nitrospirae T Universal stress protein family - - - - - - - - - - - - Usp QTD2_k127_1092180_5 330214.NIDE1926 4.427e-40 153.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein amcY GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.2.1 ko:K00368 ko00910,ko01120,map00910,map01120 M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 - - - Copper-bind,Cupredoxin_1 QTD2_k127_1092180_1 330214.NIDE1927 6.042e-87 297.0 COG0589@1|root,COG0589@2|Bacteria,3J1A7@40117|Nitrospirae 40117|Nitrospirae T Belongs to the universal stress protein A family - - - - - - - - - - - - Usp QTD2_k127_1092180_4 330214.NIDE1930 1.835e-48 177.0 COG1905@1|root,COG1905@2|Bacteria,3J1BD@40117|Nitrospirae 40117|Nitrospirae C Thioredoxin-like [2Fe-2S] ferredoxin - - 1.6.5.3 ko:K00334 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - 2Fe-2S_thioredx QTD2_k127_1092180_2 330214.NIDE1931 2.717e-66 230.0 COG1894@1|root,COG1894@2|Bacteria,3J0WX@40117|Nitrospirae 40117|Nitrospirae C NADH-ubiquinone oxidoreductase-F iron-sulfur binding region - - 1.6.5.3 ko:K00124,ko:K00335 ko00190,ko00630,ko00680,ko01100,ko01120,ko01200,map00190,map00630,map00680,map01100,map01120,map01200 M00144 R00519,R11945 RC00061,RC02796 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_51K,NADH_4Fe-4S QTD2_k127_1099528_18 330214.NIDE2473 2.802e-34 134.0 COG1028@1|root,COG1028@2|Bacteria 330214.NIDE2473|- IQ oxidoreductase activity, acting on CH-OH group of donors - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - - QTD2_k127_1099528_16 671143.DAMO_0476 2.772e-44 171.0 COG0132@1|root,COG0132@2|Bacteria 2|Bacteria H Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring bioD GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004141,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017076,GO:0017144,GO:0018130,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.47,6.3.3.3 ko:K00652,ko:K01935 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R03182,R03210,R10124 RC00004,RC00039,RC00868,RC02725 ko00000,ko00001,ko00002,ko01000,ko01007 - - - AAA_26 QTD2_k127_1099528_12 330214.NIDE2470 1.64e-77 265.0 COG0352@1|root,COG0352@2|Bacteria,3J0ND@40117|Nitrospirae 40117|Nitrospirae H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) thiE - 2.5.1.3 ko:K00788 ko00730,ko01100,map00730,map01100 M00127 R03223,R10712 RC00224,RC03255,RC03397 ko00000,ko00001,ko00002,ko01000 - - - TMP-TENI QTD2_k127_1099528_1 330214.NIDE2469 1.331e-266 824.0 COG0439@1|root,COG0439@2|Bacteria,3J0AJ@40117|Nitrospirae 40117|Nitrospirae I Biotin carboxylase C-terminal domain - - 6.3.4.14,6.4.1.2 ko:K01961 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04385 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,CPSase_L_D2 QTD2_k127_1099528_13 330214.NIDE2468 2.135e-60 214.0 COG0511@1|root,COG0511@2|Bacteria,3J0PI@40117|Nitrospirae 40117|Nitrospirae I first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA accB - - ko:K02160 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742 RC00040,RC00367 ko00000,ko00001,ko00002 - - - Biotin_lipoyl QTD2_k127_1099528_10 330214.NIDE2467 8.941e-95 313.0 COG0231@1|root,COG0231@2|Bacteria,3J0JC@40117|Nitrospirae 40117|Nitrospirae J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase efp GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - ko:K02356 - - - - ko00000,ko03012 - - - EFP,EFP_N,Elong-fact-P_C QTD2_k127_1099528_14 330214.NIDE2466 1.208e-56 201.0 COG0757@1|root,COG0757@2|Bacteria,3J199@40117|Nitrospirae 40117|Nitrospirae E Catalyzes a trans-dehydration via an enolate intermediate aroQ - 4.2.1.10 ko:K03786 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - - DHquinase_II QTD2_k127_1099528_15 330214.NIDE2465 8.27e-48 181.0 COG3118@1|root,COG3118@2|Bacteria 2|Bacteria O belongs to the thioredoxin family - - 2.7.11.1 ko:K14949,ko:K20543 ko05152,map05152 - - - ko00000,ko00001,ko01000,ko01001,ko02000 1.B.55.3 - - DUF560,EcsC,Glyco_transf_41,HyaE,NfrA_C,Sulfotransfer_3,TPR_16 QTD2_k127_1099528_5 330214.NIDE2464 2.262e-154 497.0 COG0452@1|root,COG0452@2|Bacteria,3J0GK@40117|Nitrospirae 40117|Nitrospirae H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine coaBC - 4.1.1.36,6.3.2.5 ko:K13038 ko00770,ko01100,map00770,map01100 M00120 R03269,R04231 RC00064,RC00090,RC00822 ko00000,ko00001,ko00002,ko01000 - - - DFP,Flavoprotein QTD2_k127_1099528_17 330214.NIDE2463 4.445e-43 160.0 COG1758@1|root,COG1758@2|Bacteria,3J0UJ@40117|Nitrospirae 40117|Nitrospirae K Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits rpoZ - 2.7.7.6 ko:K03060 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb6 QTD2_k127_1099528_9 330214.NIDE2462 4.011e-100 331.0 COG0194@1|root,COG0194@2|Bacteria,3J0JT@40117|Nitrospirae 40117|Nitrospirae F Essential for recycling GMP and indirectly, cGMP gmk - 2.7.4.8 ko:K00942 ko00230,ko01100,map00230,map01100 M00050 R00332,R02090 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_kin QTD2_k127_1099528_8 330214.NIDE2461 3.568e-100 336.0 COG1561@1|root,COG1561@2|Bacteria,3J0QJ@40117|Nitrospirae 40117|Nitrospirae S Domain of unknown function (DUF1732) - - - - - - - - - - - - DUF1732,YicC_N QTD2_k127_1099528_11 330214.NIDE2460 5.919e-85 286.0 COG0177@1|root,COG0177@2|Bacteria,3J0K6@40117|Nitrospirae 40117|Nitrospirae L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate nth - 4.2.99.18 ko:K10773 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD QTD2_k127_1099528_3 330214.NIDE2459 1.246e-215 682.0 COG2262@1|root,COG2262@2|Bacteria,3J0AE@40117|Nitrospirae 40117|Nitrospirae S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis hflX - - ko:K03665 - - - - ko00000,ko03009 - - - GTP-bdg_M,GTP-bdg_N,MMR_HSR1 QTD2_k127_1099528_7 330214.NIDE2458 4.318e-126 412.0 COG0533@1|root,COG0533@2|Bacteria,3J0I3@40117|Nitrospirae 40117|Nitrospirae J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction tsaD GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 ko:K01409 - - R10648 RC00070,RC00416 ko00000,ko01000,ko03016 - - - Peptidase_M22 QTD2_k127_1099528_0 330214.NIDE2457 0.0 1494.0 COG0542@1|root,COG0542@2|Bacteria,3J0B4@40117|Nitrospirae 40117|Nitrospirae O C-terminal, D2-small domain, of ClpB protein - - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N QTD2_k127_1099528_4 330214.NIDE2456 7.102e-156 496.0 COG0061@1|root,COG0061@2|Bacteria,3J0HS@40117|Nitrospirae 40117|Nitrospirae H Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP nadK - 2.7.1.23 ko:K00858 ko00760,ko01100,map00760,map01100 - R00104 RC00002,RC00078 ko00000,ko00001,ko01000 - - - NAD_kinase QTD2_k127_1099528_2 330214.NIDE2455 2.226e-232 725.0 COG0493@1|root,COG0493@2|Bacteria 2|Bacteria C 'glutamate synthase preT - 1.18.1.2,1.19.1.1,1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 ko:K00528,ko:K03388 ko00680,ko01100,ko01120,ko01200,map00680,map01100,map01120,map01200 M00356,M00357,M00563,M00567 R04540,R10159,R11928,R11931,R11943,R11944 RC00011 ko00000,ko00001,ko00002,ko01000 - - - Fer4,Fer4_20,Fer4_7,GXGXG,Pyr_redox_2,Pyr_redox_3 QTD2_k127_1099528_6 330214.NIDE2454 1.215e-132 424.0 COG0114@1|root,COG0114@2|Bacteria,3J0FU@40117|Nitrospirae 40117|Nitrospirae C Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate fumC - 4.2.1.2 ko:K01679 ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211 M00009,M00011,M00173,M00376 R01082 RC00443 ko00000,ko00001,ko00002,ko01000 - - - FumaraseC_C,Lyase_1 QTD2_k127_1099861_9 330214.NIDE1430 1.806e-13 74.0 COG3065@1|root,COG3065@2|Bacteria,3J1BB@40117|Nitrospirae 40117|Nitrospirae M Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07285 - - - - ko00000 - - - Slp QTD2_k127_1099861_1 1173028.ANKO01000164_gene2743 1.325e-105 357.0 COG2234@1|root,COG2234@2|Bacteria,1G1QW@1117|Cyanobacteria,1H7N7@1150|Oscillatoriales 1117|Cyanobacteria S PFAM Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 QTD2_k127_1099861_7 909663.KI867150_gene379 1.537e-38 149.0 COG0071@1|root,COG0071@2|Bacteria,1N7C7@1224|Proteobacteria,42U0T@68525|delta/epsilon subdivisions,2WQ7I@28221|Deltaproteobacteria,2MS9G@213462|Syntrophobacterales 28221|Deltaproteobacteria O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 QTD2_k127_1099861_3 269799.Gmet_0421 4.531e-80 274.0 COG2823@1|root,COG2823@2|Bacteria,1RFX5@1224|Proteobacteria,42UUG@68525|delta/epsilon subdivisions,2WQ1N@28221|Deltaproteobacteria,43U92@69541|Desulfuromonadales 28221|Deltaproteobacteria S BON domain - - - - - - - - - - - - BON QTD2_k127_1099861_5 243233.MCA0073 7.326e-42 155.0 COG1180@1|root,COG1180@2|Bacteria,1NQC1@1224|Proteobacteria,1T0C4@1236|Gammaproteobacteria,1XEHM@135618|Methylococcales 135618|Methylococcales C Radical SAM superfamily - - 1.97.1.4 ko:K04069 - - R04710 - ko00000,ko01000 - - - Radical_SAM QTD2_k127_1099861_0 1041159.AZUW01000009_gene4518 5.248e-147 469.0 COG1180@1|root,COG1180@2|Bacteria,1R8XY@1224|Proteobacteria,2VGDJ@28211|Alphaproteobacteria 28211|Alphaproteobacteria C Radical SAM superfamily - - 1.97.1.4 ko:K04069 - - R04710 - ko00000,ko01000 - - - Radical_SAM QTD2_k127_1099861_2 518766.Rmar_0239 1.618e-103 347.0 COG0430@1|root,COG0430@2|Bacteria 2|Bacteria A RNA-3'-phosphate cyclase activity rtcA GO:0003674,GO:0003824,GO:0003963,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009975,GO:0016874,GO:0016886,GO:0044424,GO:0044464,GO:0140098 6.5.1.4 ko:K01974 - - - - ko00000,ko01000 - - - RTC,RTC_insert QTD2_k127_1099861_8 69014.TK0292 2.421e-27 117.0 COG1656@1|root,arCOG04290@2157|Archaea,2XXTT@28890|Euryarchaeota,2447N@183968|Thermococci 183968|Thermococci S Mut7-C RNAse domain - - - ko:K09122 - - - - ko00000 - - - Mut7-C QTD2_k127_1099861_4 1121935.AQXX01000060_gene1987 3.205e-55 204.0 COG4089@1|root,COG4089@2|Bacteria,1MV8K@1224|Proteobacteria,1S5RT@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Protein of unknown function (DUF1614) - - - - - - - - - - - - DUF1614 QTD2_k127_1105697_2 330214.NIDE1582 2.183e-62 216.0 COG3118@1|root,COG3118@2|Bacteria,3J0P6@40117|Nitrospirae 40117|Nitrospirae O Thioredoxin-like domain - - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin QTD2_k127_1105697_0 330214.NIDE1583 6.755e-163 529.0 COG0497@1|root,COG0497@2|Bacteria,3J0HU@40117|Nitrospirae 40117|Nitrospirae L May be involved in recombinational repair of damaged DNA recN - - ko:K03631 - - - - ko00000,ko03400 - - - SMC_N QTD2_k127_1105697_1 330214.NIDE1584 2.353e-126 410.0 COG3437@1|root,COG3437@2|Bacteria,3J0ID@40117|Nitrospirae 2|Bacteria T response regulator MA20_23615 - - ko:K07814 - - - - ko00000,ko02022 - - - HD,HD_5,Response_reg QTD2_k127_1108646_3 330214.NIDE1411 3.874e-277 856.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - - - - - - - - - - - Methyltransf_11,Methyltransf_23,Methyltransf_25,Methyltransf_31 QTD2_k127_1108646_12 330214.NIDE1412 3.369e-32 130.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - 1.7.2.1 ko:K00368 ko00910,ko01120,map00910,map01120 M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 - - - CCP_MauG,Copper-bind,Cu-oxidase_3,Cupredoxin_1 QTD2_k127_1108646_13 550540.Fbal_2498 4.021e-10 71.0 COG3325@1|root,COG3979@1|root,COG3325@2|Bacteria,COG3979@2|Bacteria,1MWAR@1224|Proteobacteria,1RPNS@1236|Gammaproteobacteria 1236|Gammaproteobacteria G chitinase chiA - 3.2.1.14 ko:K01183 ko00520,ko01100,map00520,map01100 - R01206,R02334 RC00467 ko00000,ko00001,ko01000 - GH18 - CBM_5_12,ChitinaseA_N,Glyco_hydro_18,REJ QTD2_k127_1108646_9 330214.NIDE1415 2.79e-69 242.0 COG1750@1|root,COG1750@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF11,Lon_C,SdrD_B QTD2_k127_1108646_10 330214.NIDE1416 5.231e-67 242.0 COG1357@1|root,COG1357@2|Bacteria 2|Bacteria S protein homooligomerization - - - - - - - - - - - - Pentapeptide,Pentapeptide_3,Pentapeptide_4 QTD2_k127_1108646_7 330214.NIDE1417 5.563e-115 376.0 COG1354@1|root,COG1354@2|Bacteria,3J13J@40117|Nitrospirae 40117|Nitrospirae D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves scpA - - ko:K05896 - - - - ko00000,ko03036 - - - SMC_ScpA QTD2_k127_1108646_8 330214.NIDE1418 7.165e-86 291.0 COG1386@1|root,COG1386@2|Bacteria,3J15Z@40117|Nitrospirae 40117|Nitrospirae D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves scpB - - ko:K06024 - - - - ko00000,ko03036 - - - SMC_ScpB QTD2_k127_1108646_0 330214.NIDE1420 0.0 1740.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - DUF5128,NHL,PA14 QTD2_k127_1108646_4 330214.NIDE1421 6.686e-273 844.0 COG0516@1|root,COG0517@1|root,COG0516@2|Bacteria,COG0517@2|Bacteria,3J0A1@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth guaB - 1.1.1.205 ko:K00088 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 M00050 R01130,R08240 RC00143,RC02207 ko00000,ko00001,ko00002,ko01000,ko04147 - - - CBS,IMPDH QTD2_k127_1108646_2 330214.NIDE1422 7.376e-313 961.0 COG0518@1|root,COG0519@1|root,COG0518@2|Bacteria,COG0519@2|Bacteria,3J0A2@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the synthesis of GMP from XMP guaA - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase,GMP_synt_C,NAD_synthase QTD2_k127_1108646_6 330214.NIDE1423 1.901e-121 394.0 COG1187@1|root,COG1187@2|Bacteria,3J0RN@40117|Nitrospirae 40117|Nitrospirae J Belongs to the pseudouridine synthase RsuA family - - 5.4.99.20,5.4.99.21,5.4.99.22 ko:K06178,ko:K06181,ko:K06182 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 QTD2_k127_1108646_1 330214.NIDE1425 0.0 1060.0 COG0173@1|root,COG0173@2|Bacteria,3J0FR@40117|Nitrospirae 40117|Nitrospirae J Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) aspS - 6.1.1.12 ko:K01876 ko00970,map00970 M00359,M00360 R05577 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - GAD,tRNA-synt_2,tRNA_anti-codon QTD2_k127_1108646_5 330214.NIDE1426 6.793e-207 648.0 COG0082@1|root,COG0082@2|Bacteria,3J0KQ@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system aroC - 4.2.3.5 ko:K01736 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01714 RC00586 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_synt QTD2_k127_1135671_7 207559.Dde_2479 5.937e-08 54.0 COG1666@1|root,COG1666@2|Bacteria,1RDTF@1224|Proteobacteria,42SVZ@68525|delta/epsilon subdivisions,2WN8K@28221|Deltaproteobacteria,2MBGG@213115|Desulfovibrionales 28221|Deltaproteobacteria S Belongs to the UPF0234 family yajQ - - ko:K09767 - - - - ko00000 - - - DUF520 QTD2_k127_1135671_4 880072.Desac_2172 4.641e-17 85.0 arCOG07300@1|root,2ZTGG@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_1135671_5 880072.Desac_2179 1.777e-13 79.0 COG0468@1|root,COG0468@2|Bacteria 2|Bacteria L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage - - - - - - - - - - - - AAA_12,AAA_24,AAA_25,DUF4011 QTD2_k127_1135671_2 330214.NIDE3144 4.541e-77 264.0 COG1974@1|root,COG1974@2|Bacteria,3J1C0@40117|Nitrospirae 40117|Nitrospirae K Represses a number of genes involved in the response to DNA damage (SOS response) lexA - 3.4.21.88 ko:K01356 - M00729 - - ko00000,ko00002,ko01000,ko01002,ko03400 - - - Peptidase_S24 QTD2_k127_1135671_6 330214.NIDE3147 6.584e-09 59.0 2C2AA@1|root,2ZAYY@2|Bacteria,3J1CT@40117|Nitrospirae 40117|Nitrospirae S Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - TraT QTD2_k127_1135671_0 330214.NIDE3148 3.163e-157 506.0 COG3842@1|root,COG3842@2|Bacteria 2|Bacteria P ATPase activity modC - 2.10.1.1,3.6.3.29,3.6.3.55 ko:K02017,ko:K02018,ko:K03750,ko:K15497 ko00790,ko01100,ko02010,map00790,map01100,map02010 M00189,M00423 R09735,R10531 RC00002,RC03462 ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.6.5,3.A.1.8 - - ABC_tran,BPD_transp_1,TOBE QTD2_k127_1135671_1 1121920.AUAU01000007_gene420 3.092e-83 282.0 COG4149@1|root,COG4149@2|Bacteria,3Y4EA@57723|Acidobacteria 57723|Acidobacteria P PFAM binding-protein-dependent transport systems inner membrane component - - - ko:K02018 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 3.A.1.8 - - BPD_transp_1 QTD2_k127_1135671_3 330214.NIDE3150 1.678e-26 109.0 COG3585@1|root,COG3585@2|Bacteria 2|Bacteria H molybdate ion transport modE GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464 - ko:K02019 - - - - ko00000,ko03000 - - - HTH_1,TOBE QTD2_k127_1152086_2 330214.NIDE1052 7.859e-67 229.0 COG4319@1|root,COG4319@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - SnoaL_3 QTD2_k127_1152086_0 330214.NIDE1043 4.76e-103 345.0 COG0697@1|root,COG0697@2|Bacteria 2|Bacteria EG spore germination yetK - - - - - - - - - - - EamA QTD2_k127_1152086_1 330214.NIDE1042 2.27e-96 320.0 COG4122@1|root,COG4122@2|Bacteria,3J1C3@40117|Nitrospirae 40117|Nitrospirae S Methyltransferase domain - - - - - - - - - - - - - QTD2_k127_1152086_3 330214.NIDE1041 1.099e-56 200.0 COG2317@1|root,COG2317@2|Bacteria 2|Bacteria E metallocarboxypeptidase activity ypwA GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.17.19 ko:K01299,ko:K03281 - - - - ko00000,ko01000,ko01002 2.A.49 - - Peptidase_M32 QTD2_k127_1164851_5 98439.AJLL01000081_gene2394 0.0003547 46.0 COG3011@1|root,COG3011@2|Bacteria,1G60H@1117|Cyanobacteria,1JKW8@1189|Stigonemataceae 1117|Cyanobacteria S Protein of unknown function, DUF393 - - - - - - - - - - - - DUF393 QTD2_k127_1164851_3 596151.DesfrDRAFT_3228 1.125e-47 187.0 COG0500@1|root,COG0500@2|Bacteria,1QW86@1224|Proteobacteria,42N1Q@68525|delta/epsilon subdivisions,2WJJS@28221|Deltaproteobacteria,2MA1B@213115|Desulfovibrionales 28221|Deltaproteobacteria Q O-methyltransferase, family 2 - - - - - - - - - - - - Dimerisation2,Methyltransf_2 QTD2_k127_1164851_0 330214.NIDE1402 1.19e-143 458.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE1402|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_1164851_1 330214.NIDE1401 4.271e-92 305.0 COG0491@1|root,COG0491@2|Bacteria 2|Bacteria GM Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - - - - - - - - - - Lactamase_B_5 QTD2_k127_1182583_2 330214.NIDE2812 1.128e-33 129.0 COG4191@1|root,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - DUF4041,GGDEF,HATPase_c,HisKA,Response_reg,T5orf172,dCache_1 QTD2_k127_1182583_0 330214.NIDE0584 8.952e-155 507.0 COG0642@1|root,COG0784@1|root,COG2202@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,3J0ZF@40117|Nitrospirae 2|Bacteria T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - CHASE3,CHASE8,GAF,GAF_2,HAMP,HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,PAS_7,PAS_8,PAS_9,Response_reg QTD2_k127_1182583_1 330214.NIDE3536 2.542e-37 145.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HATPase_c,HisKA,PAS,PIG-L,Response_reg QTD2_k127_1201004_24 330214.NIDE1707 1.013e-13 71.0 COG0013@1|root,COG0013@2|Bacteria,3J0D3@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD QTD2_k127_1201004_23 56780.SYN_01734 5.568e-38 149.0 COG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,42UC6@68525|delta/epsilon subdivisions,2WPDD@28221|Deltaproteobacteria,2MS8A@213462|Syntrophobacterales 28221|Deltaproteobacteria J Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA - - - ko:K07447 - - - - ko00000,ko01000 - - - RuvX QTD2_k127_1201004_6 330214.NIDE1709 4.405e-131 426.0 COG1559@1|root,COG1559@2|Bacteria,3J0IR@40117|Nitrospirae 40117|Nitrospirae S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation mltG - - ko:K07082 - - - - ko00000 - - - YceG QTD2_k127_1201004_14 330214.NIDE1710 2.722e-96 319.0 COG0274@1|root,COG0274@2|Bacteria 2|Bacteria F deoxyribose-phosphate aldolase activity deoC - 4.1.2.4 ko:K01619 ko00030,map00030 - R01066 RC00436,RC00437 ko00000,ko00001,ko01000 - - - DeoC QTD2_k127_1201004_10 330214.NIDE1711 3.007e-111 371.0 COG1015@1|root,COG1015@2|Bacteria 2|Bacteria G phosphopentomutase activity deoB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008973,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 5.4.2.7 ko:K01839 ko00030,ko00230,map00030,map00230 - R01057,R02749 RC00408 ko00000,ko00001,ko01000 - - iLF82_1304.LF82_0465,iNRG857_1313.NRG857_22165 Metalloenzyme QTD2_k127_1201004_19 330214.NIDE1723 3.195e-61 218.0 COG0251@1|root,COG0251@2|Bacteria,3J144@40117|Nitrospirae 40117|Nitrospirae J Endoribonuclease L-PSP - - - - - - - - - - - - YjgF_endoribonc QTD2_k127_1201004_2 330214.NIDE1724 4.779e-237 749.0 COG5184@1|root,COG5184@2|Bacteria 2|Bacteria DZ guanyl-nucleotide exchange factor activity - - - - - - - - - - - - Big_5,Cadherin-like,DUF3494,Glug,TIG QTD2_k127_1201004_8 330214.NIDE1725 3.517e-116 384.0 COG4447@1|root,COG4447@2|Bacteria,3J16A@40117|Nitrospirae 40117|Nitrospirae S Photosynthesis system II assembly factor YCF48 - - - - - - - - - - - - PSII_BNR QTD2_k127_1201004_20 330214.NIDE1726 1.824e-60 217.0 COG1385@1|root,COG1385@2|Bacteria,3J18K@40117|Nitrospirae 40117|Nitrospirae J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit - - 2.1.1.193 ko:K09761 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_RNA QTD2_k127_1201004_7 338963.Pcar_0106 1.677e-124 411.0 COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,42KZM@68525|delta/epsilon subdivisions,2WJGP@28221|Deltaproteobacteria,43SEG@69541|Desulfuromonadales 28221|Deltaproteobacteria O DnaJ central domain dnaJ - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG QTD2_k127_1201004_1 330214.NIDE1728 0.0 1114.0 COG0443@1|root,COG0443@2|Bacteria,3J0D2@40117|Nitrospirae 40117|Nitrospirae O Heat shock 70 kDa protein dnaK - - ko:K04043 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33.1 - - HSP70 QTD2_k127_1201004_18 330214.NIDE1729 1.695e-61 218.0 COG0576@1|root,COG0576@2|Bacteria,3J0QP@40117|Nitrospirae 40117|Nitrospirae O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ grpE - - ko:K03687 - - - - ko00000,ko03029,ko03110 - - - GrpE QTD2_k127_1201004_12 330214.NIDE1730 1e-105 349.0 COG1521@1|root,COG1521@2|Bacteria,3J0TR@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis coaX - 2.7.1.33 ko:K03525 ko00770,ko01100,map00770,map01100 M00120 R02971,R03018,R04391 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Pan_kinase QTD2_k127_1201004_17 330214.NIDE1731 1.547e-61 221.0 COG0340@1|root,COG0340@2|Bacteria,3J0U2@40117|Nitrospirae 40117|Nitrospirae H Biotin/lipoate A/B protein ligase family - - 6.3.4.15 ko:K03524 ko00780,ko01100,map00780,map01100 - R01074,R05145 RC00043,RC00070,RC00096,RC02896 ko00000,ko00001,ko01000,ko03000 - - - BPL_C,BPL_LplA_LipB QTD2_k127_1201004_15 330214.NIDE1732 6.157e-93 315.0 COG0157@1|root,COG0157@2|Bacteria,3J0JY@40117|Nitrospirae 40117|Nitrospirae H Quinolinate phosphoribosyl transferase, C-terminal domain nadC - 2.4.2.19 ko:K00767 ko00760,ko01100,map00760,map01100 M00115 R03348 RC02877 ko00000,ko00001,ko00002,ko01000 - - - QRPTase_C,QRPTase_N QTD2_k127_1201004_0 330214.NIDE1733 0.0 1245.0 COG0525@1|root,COG0525@2|Bacteria,3J0B9@40117|Nitrospirae 40117|Nitrospirae J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner valS - 6.1.1.9 ko:K01873 ko00970,map00970 M00359,M00360 R03665 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1 QTD2_k127_1201004_16 330214.NIDE1735 6.878e-80 280.0 COG0784@1|root,COG0784@2|Bacteria 2|Bacteria T Response regulator, receiver VP1245 - - - - - - - - - - - DUF3369,EAL,GAF_2,GGDEF,HATPase_c,HD,HisKA,Response_reg,cNMP_binding QTD2_k127_1201004_13 330214.NIDE1736 5.137e-97 322.0 COG1011@1|root,COG1011@2|Bacteria 2|Bacteria S phosphatase activity - - - ko:K07025 - - - - ko00000 - - - HAD_2 QTD2_k127_1201004_11 330214.NIDE1737 8.277e-107 351.0 COG0846@1|root,COG0846@2|Bacteria,3J15J@40117|Nitrospirae 40117|Nitrospirae K Belongs to the sirtuin family. Class - - - ko:K12410 - - - - ko00000,ko01000 - - - SIR2 QTD2_k127_1201004_3 330214.NIDE1738 2.226e-223 700.0 COG1893@1|root,COG2041@1|root,COG1893@2|Bacteria,COG2041@2|Bacteria,3J0S5@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - 1.1.1.169 ko:K00077 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R02472 RC00726 ko00000,ko00001,ko00002,ko01000 - - - ApbA,ApbA_C QTD2_k127_1201004_4 330214.NIDE1739 9.856e-190 604.0 COG0534@1|root,COG0534@2|Bacteria 2|Bacteria V drug transmembrane transporter activity norM - - ko:K03327 - - - - ko00000,ko02000 2.A.66.1 - - MatE QTD2_k127_1201004_5 330214.NIDE1740 4.169e-187 604.0 COG2251@1|root,COG2251@2|Bacteria 2|Bacteria - - nusA GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - ko:K02600 - - - - ko00000,ko03009,ko03021 - - - DUF2779,HHH_5,KH_5,NusA_N,S1 QTD2_k127_1201004_22 1487953.JMKF01000048_gene2054 7.987e-42 163.0 COG2091@1|root,COG2091@2|Bacteria,1G5GA@1117|Cyanobacteria,1HAPE@1150|Oscillatoriales 1117|Cyanobacteria H Belongs to the P-Pant transferase superfamily - - - ko:K06133 ko00770,map00770 - R01625 RC00002 ko00000,ko00001,ko01000 - - - ACPS QTD2_k127_1201004_21 1232410.KI421424_gene1847 3.64e-51 187.0 COG0590@1|root,COG0590@2|Bacteria,1RGU0@1224|Proteobacteria,42TVP@68525|delta/epsilon subdivisions,2WQ7U@28221|Deltaproteobacteria,43SHE@69541|Desulfuromonadales 28221|Deltaproteobacteria FJ MafB19-like deaminase tadA - 3.5.4.33 ko:K11991 - - R10223 RC00477 ko00000,ko01000,ko03016 - - - MafB19-deam QTD2_k127_1201004_26 330214.NIDE1746 9.374e-10 59.0 COG4372@1|root,COG5343@1|root,COG4372@2|Bacteria,COG5343@2|Bacteria 2|Bacteria S Anti-sigma-K factor rskA - - - ko:K18682 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - LZ_Tnp_IS66,RskA,zf-HC2 QTD2_k127_1209775_5 330214.NIDE1108 1.048e-220 699.0 COG1193@1|root,COG1193@2|Bacteria,3J0Y0@40117|Nitrospirae 40117|Nitrospirae L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity mutS2 - - ko:K07456 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_V,Smr QTD2_k127_1209775_8 330214.NIDE1107 6.995e-191 600.0 COG0057@1|root,COG0057@2|Bacteria,3J0D8@40117|Nitrospirae 40117|Nitrospirae C Belongs to the glyceraldehyde-3-phosphate dehydrogenase family - - 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N QTD2_k127_1209775_4 330214.NIDE1106 5.12e-221 689.0 COG0126@1|root,COG0126@2|Bacteria,3J0DE@40117|Nitrospirae 40117|Nitrospirae G Phosphoglycerate kinase pgk - 2.7.2.3 ko:K00927 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01512 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGK QTD2_k127_1209775_20 330214.NIDE1105 3.31e-85 289.0 COG0149@1|root,COG0149@2|Bacteria,3J0MW@40117|Nitrospirae 40117|Nitrospirae G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) tpiA GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01015 RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - TIM QTD2_k127_1209775_30 330214.NIDE1104 1.761e-42 160.0 COG1314@1|root,COG1314@2|Bacteria,3J0V0@40117|Nitrospirae 40117|Nitrospirae U Preprotein translocase SecG subunit - - - ko:K03075 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - SecG QTD2_k127_1209775_11 330214.NIDE1103 4.704e-167 528.0 COG0115@1|root,COG0115@2|Bacteria,3J0BM@40117|Nitrospirae 40117|Nitrospirae E Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family ilvE - 2.6.1.42 ko:K00826 ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R10991 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 QTD2_k127_1209775_27 330214.NIDE1102 3.072e-45 166.0 COG0261@1|root,COG0261@2|Bacteria,3J0TM@40117|Nitrospirae 40117|Nitrospirae J This protein binds to 23S rRNA in the presence of protein L20 rplU GO:0003674,GO:0003735,GO:0005198 - ko:K02888 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L21p QTD2_k127_1209775_29 330214.NIDE1101 5.173e-43 158.0 COG0211@1|root,COG0211@2|Bacteria,3J0RB@40117|Nitrospirae 40117|Nitrospirae J Belongs to the bacterial ribosomal protein bL27 family rpmA GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02899 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27 QTD2_k127_1209775_15 289376.THEYE_A0433 7.746e-125 408.0 COG0536@1|root,COG0536@2|Bacteria,3J0E3@40117|Nitrospirae 40117|Nitrospirae S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control obg - - ko:K03979 - - - - ko00000,ko01000,ko03009 - - - GTP1_OBG,MMR_HSR1 QTD2_k127_1209775_9 330214.NIDE1099 8.315e-185 584.0 COG0263@1|root,COG0263@2|Bacteria,3J0GU@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate proB - 2.7.2.11 ko:K00931 ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230 M00015 R00239 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,PUA QTD2_k127_1209775_23 330214.NIDE1098 7.385e-72 249.0 COG1057@1|root,COG1057@2|Bacteria,3J0T3@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) nadD - 2.7.7.18 ko:K00969 ko00760,ko01100,map00760,map01100 M00115 R00137,R03005 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_like QTD2_k127_1209775_28 330214.NIDE1097 2.487e-43 162.0 COG0799@1|root,COG0799@2|Bacteria,3J0UC@40117|Nitrospirae 40117|Nitrospirae J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation rsfS - - ko:K09710 - - - - ko00000,ko03009 - - - RsfS QTD2_k127_1209775_3 330214.NIDE1096 2.975e-239 746.0 COG2956@1|root,COG2956@2|Bacteria,3J0KC@40117|Nitrospirae 40117|Nitrospirae G Tetratricopeptide repeat - - - - - - - - - - - - TPR_16 QTD2_k127_1209775_10 330214.NIDE1095 3.157e-169 541.0 COG0502@1|root,COG0502@2|Bacteria,3J0I9@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism bioB - 2.8.1.6 ko:K01012 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R01078 RC00441 ko00000,ko00001,ko00002,ko01000 - - - BATS,Radical_SAM QTD2_k127_1209775_2 330214.NIDE1094 1.389e-263 838.0 COG0577@1|root,COG0577@2|Bacteria,3J0Z3@40117|Nitrospirae 40117|Nitrospirae V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD QTD2_k127_1209775_34 330214.NIDE1093 7.112e-22 97.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - - - - - - - - - - AroM,GerE QTD2_k127_1209775_12 330214.NIDE1091 3.349e-159 509.0 COG0167@1|root,COG0167@2|Bacteria,3J145@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the conversion of dihydroorotate to orotate pyrD GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.98.1 ko:K00226,ko:K17828 ko00240,ko01100,map00240,map01100 M00051 R01867,R01869 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh QTD2_k127_1209775_19 330214.NIDE1090 1.831e-87 295.0 COG1136@1|root,COG1136@2|Bacteria 2|Bacteria V lipoprotein transporter activity - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran QTD2_k127_1209775_21 330214.NIDE1089 2.116e-84 288.0 COG1040@1|root,COG1040@2|Bacteria,3J19P@40117|Nitrospirae 40117|Nitrospirae S Phosphoribosyl transferase domain - - - - - - - - - - - - Pribosyltran QTD2_k127_1209775_32 330214.NIDE1088 2.822e-34 134.0 COG2331@1|root,COG2331@2|Bacteria 2|Bacteria P Regulatory protein, FmdB family - - - - - - - - - - - - Zn-ribbon_8 QTD2_k127_1209775_35 1078020.KEK_06750 1.369e-11 66.0 COG3311@1|root,COG3311@2|Bacteria 2|Bacteria K DNA excision - - - ko:K02806 ko02060,map02060 - - - ko00000,ko00001,ko01000,ko02000 - - - HTH_17,PTS_EIIA_2 QTD2_k127_1209775_24 330214.NIDE1087 3.01e-69 239.0 COG2001@1|root,COG2001@2|Bacteria,3J0VQ@40117|Nitrospirae 40117|Nitrospirae K MraZ protein, putative antitoxin-like mraZ - - ko:K03925 - - - - ko00000 - - - MraZ QTD2_k127_1209775_26 330214.NIDE1086 9.543e-46 174.0 COG4570@1|root,COG4570@2|Bacteria 2|Bacteria L crossover junction endodeoxyribonuclease activity rusA - 3.1.22.4 ko:K01160 - - - - ko00000,ko01000,ko03400 - - - RusA QTD2_k127_1209775_7 330214.NIDE1084 4.823e-214 669.0 COG0577@1|root,COG0577@2|Bacteria,3J0EW@40117|Nitrospirae 40117|Nitrospirae V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD QTD2_k127_1209775_17 330214.NIDE1083 1.108e-109 359.0 COG1136@1|root,COG1136@2|Bacteria,3J10N@40117|Nitrospirae 40117|Nitrospirae V Evidence 2b Function of strongly homologous gene - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran QTD2_k127_1209775_13 330214.NIDE1082 1.896e-154 498.0 COG0845@1|root,COG0845@2|Bacteria,3J0HQ@40117|Nitrospirae 40117|Nitrospirae M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K02005 - - - - ko00000 - - - HlyD_D23 QTD2_k127_1209775_22 330214.NIDE1081 1.426e-74 257.0 COG1196@1|root,COG1555@1|root,COG1196@2|Bacteria,COG1555@2|Bacteria 2|Bacteria L photosystem II stabilization comEA - - ko:K02237 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - HHH_3,SLBB QTD2_k127_1209775_16 330214.NIDE1080 3.94e-115 378.0 COG1968@1|root,COG1968@2|Bacteria,3J0S7@40117|Nitrospirae 40117|Nitrospirae V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP) uppP - 3.6.1.27 ko:K06153 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - BacA QTD2_k127_1209775_25 330214.NIDE1078 8.361e-69 243.0 COG0597@1|root,COG0597@2|Bacteria,3J0S2@40117|Nitrospirae 40117|Nitrospirae MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins lspA - 3.4.23.36 ko:K03101 ko03060,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_A8 QTD2_k127_1209775_0 330214.NIDE1077 0.0 1506.0 COG0060@1|root,COG0060@2|Bacteria,3J0BF@40117|Nitrospirae 40117|Nitrospirae J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1,zf-FPG_IleRS QTD2_k127_1209775_6 330214.NIDE1076 1.165e-220 686.0 COG0379@1|root,COG0379@2|Bacteria,3J0NV@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate nadA GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 ko:K03517 ko00760,ko01100,map00760,map01100 M00115 R04292 RC01119 ko00000,ko00001,ko00002,ko01000 - - - NadA QTD2_k127_1209775_1 62928.azo0840 2.563e-313 972.0 COG0422@1|root,COG0422@2|Bacteria,1MUVV@1224|Proteobacteria,2VHS3@28216|Betaproteobacteria,2KV81@206389|Rhodocyclales 206389|Rhodocyclales H Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction thiC - 4.1.99.17 ko:K03147 ko00730,ko01100,map00730,map01100 M00127 R03472 RC03251,RC03252 ko00000,ko00001,ko00002,ko01000 - - - ThiC-associated,ThiC_Rad_SAM QTD2_k127_1209775_14 330214.NIDE1062 2.779e-154 490.0 COG1635@1|root,COG1635@2|Bacteria 2|Bacteria H Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur thi4 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0018131,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046484,GO:0046872,GO:0046914,GO:0052837,GO:0052838,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - ko:K03146 ko00730,ko01100,map00730,map01100 - R10685 RC00033,RC03253,RC03254 ko00000,ko00001 - - - FAD_oxidored,Thi4 QTD2_k127_1209775_18 330214.NIDE1061 7.699e-95 312.0 COG3063@1|root,COG3063@2|Bacteria 2|Bacteria NU photosynthesis sscB - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_8 QTD2_k127_1209775_33 330214.NIDE1060 5.513e-34 134.0 COG2199@1|root,COG3706@2|Bacteria 2|Bacteria T GGDEF domain - - - - - - - - - - - - GGDEF QTD2_k127_1230908_0 330214.NIDE2260 2.582e-181 577.0 COG0606@1|root,COG0606@2|Bacteria,3J0ZK@40117|Nitrospirae 40117|Nitrospirae O Magnesium chelatase, subunit ChlI C-terminal - - - ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C QTD2_k127_1230908_3 330214.NIDE2258 1.574e-30 123.0 COG1522@1|root,COG1522@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - AsnC_trans_reg,HTH_24,HTH_AsnC-type QTD2_k127_1230908_2 330214.NIDE2257 3.206e-88 301.0 COG0673@1|root,COG0673@2|Bacteria 2|Bacteria S inositol 2-dehydrogenase activity - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C QTD2_k127_1230908_1 330214.NIDE2255 8.317e-116 379.0 COG0412@1|root,COG0412@2|Bacteria,3J1B9@40117|Nitrospirae 40117|Nitrospirae Q Alpha/beta hydrolase family - - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH QTD2_k127_1249507_6 330214.NIDE0527 9.597e-21 92.0 COG0585@1|root,COG0585@2|Bacteria 2|Bacteria J pseudouridine synthase activity truD GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 ko:K06176 - - - - ko00000,ko01000,ko03016 - - - TruD QTD2_k127_1249507_0 330214.NIDE0525 3.749e-118 386.0 COG1408@1|root,COG1408@2|Bacteria,3J0SB@40117|Nitrospirae 40117|Nitrospirae S Calcineurin-like phosphoesterase - - - ko:K07098 - - - - ko00000 - - - Metallophos QTD2_k127_1249507_2 330214.NIDE0524 5.2e-68 237.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - 4.4.1.31 ko:K02632 ko00196,map00196 - - - ko00000,ko00001,ko00194,ko01000 - - - HEAT_2,HEAT_PBS QTD2_k127_1249507_3 330214.NIDE0523 5.83e-60 223.0 COG1846@1|root,COG1846@2|Bacteria,3J14X@40117|Nitrospirae 40117|Nitrospirae K Winged helix-turn-helix DNA-binding - - - - - - - - - - - - - QTD2_k127_1249507_1 330214.NIDE0522 2.094e-116 379.0 COG1234@1|root,COG1234@2|Bacteria 2|Bacteria L tRNA 3'-trailer cleavage - - - - - - - - - - - - DUF1566,Lactamase_B_2 QTD2_k127_1249507_5 330214.NIDE0521 4.099e-21 93.0 COG2912@1|root,COG2912@2|Bacteria 2|Bacteria P Transglutaminase-like superfamily - - - - - - - - - - - - TPR_9,Transglut_core2 QTD2_k127_1360141_2 330214.NIDE3859 9.717e-69 238.0 COG0071@1|root,COG0071@2|Bacteria,3J0TV@40117|Nitrospirae 40117|Nitrospirae O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 QTD2_k127_1360141_1 330214.NIDE3860 8.125e-81 275.0 COG1926@1|root,COG1926@2|Bacteria,3J18T@40117|Nitrospirae 40117|Nitrospirae S Phosphoribosyl transferase domain - - - - - - - - - - - - Pribosyltran QTD2_k127_1360141_3 330214.NIDE3861 1.019e-67 236.0 COG1499@1|root,COG1499@2|Bacteria 2|Bacteria J amine dehydrogenase activity - - - - - - - - - - - - NMD3 QTD2_k127_1360141_0 330214.NIDE3863 9.28e-96 321.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - - - - - - - - - - Usp QTD2_k127_1360141_5 330214.NIDE3864 9.985e-24 104.0 COG2010@1|root,COG2010@2|Bacteria,3J1AX@40117|Nitrospirae 2|Bacteria C Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K12263 - - - - ko00000 - - - Cytochrome_CBB3,SirB QTD2_k127_1374228_1 330214.NIDE4347 1.004e-262 814.0 COG0065@1|root,COG0065@2|Bacteria,3J0IH@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuC - 4.2.1.33,4.2.1.35 ko:K01703 ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase QTD2_k127_1374228_9 330214.NIDE4348 2.649e-105 346.0 COG0066@1|root,COG0066@2|Bacteria,3J10U@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuD - 4.2.1.33,4.2.1.35 ko:K01704 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R10170 RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase_C QTD2_k127_1374228_8 237368.SCABRO_02415 1.445e-121 403.0 COG0598@1|root,COG0598@2|Bacteria,2IX61@203682|Planctomycetes 203682|Planctomycetes P Mediates influx of magnesium ions corA - - ko:K03284 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3 - - CorA QTD2_k127_1374228_14 330214.NIDE4351 4.134e-77 268.0 COG0483@1|root,COG0483@2|Bacteria 2|Bacteria G inositol monophosphate 1-phosphatase activity suhB2 - 3.1.3.25 ko:K01092 ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070 M00131 R01185,R01186,R01187 RC00078 ko00000,ko00001,ko00002,ko01000 - - - DUF4170,Inositol_P QTD2_k127_1374228_12 330214.NIDE4352 5.715e-96 321.0 COG2084@1|root,COG2084@2|Bacteria 2|Bacteria I phosphogluconate dehydrogenase (decarboxylating) activity mmsB - 1.1.1.31,1.1.1.60 ko:K00020,ko:K00042 ko00280,ko00630,ko01100,map00280,map00630,map01100 - R01745,R01747,R05066 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 QTD2_k127_1374228_3 330214.NIDE4097 1.983e-231 730.0 COG2804@1|root,COG2804@2|Bacteria,3J0XR@40117|Nitrospirae 40117|Nitrospirae NU Type II/IV secretion system protein - - - ko:K02454,ko:K02652 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - T2SSE,T2SSE_N QTD2_k127_1374228_7 1254432.SCE1572_31200 2.946e-168 537.0 COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,42N1P@68525|delta/epsilon subdivisions,2WM2V@28221|Deltaproteobacteria,2YU4D@29|Myxococcales 28221|Deltaproteobacteria E Aminotransferase - - - ko:K10907 - - - - ko00000,ko01000,ko01007 - - - Aminotran_1_2 QTD2_k127_1374228_21 330214.NIDE3738 5.055e-30 126.0 COG0741@1|root,COG0741@2|Bacteria,3J19T@40117|Nitrospirae 40117|Nitrospirae M Transglycosylase SLT domain - - - - - - - - - - - - SLT QTD2_k127_1374228_13 330214.NIDE4360 5.686e-85 286.0 COG0225@1|root,COG0225@2|Bacteria 2|Bacteria O peptide-methionine (S)-S-oxide reductase activity msrA - 1.8.4.11,1.8.4.12 ko:K07304,ko:K12267 - - - - ko00000,ko01000 - - - PMSR QTD2_k127_1374228_17 330214.NIDE4361 1.908e-57 203.0 COG5608@1|root,COG5608@2|Bacteria 2|Bacteria S Late embryogenesis abundant protein - - - - - - - - - - - - LEA_2 QTD2_k127_1374228_15 330214.NIDE4362 5.315e-67 233.0 COG1611@1|root,COG1611@2|Bacteria,3J0TX@40117|Nitrospirae 40117|Nitrospirae S Belongs to the LOG family - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - - QTD2_k127_1374228_6 330214.NIDE4364 2.742e-188 603.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE4364|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_1374228_4 330214.NIDE4367 3.255e-196 623.0 COG0312@1|root,COG0312@2|Bacteria 2|Bacteria S metallopeptidase activity tldE2 - - - - - - - - - - - PmbA_TldD QTD2_k127_1374228_2 330214.NIDE4368 7.442e-255 792.0 COG0312@1|root,COG0312@2|Bacteria 2|Bacteria S metallopeptidase activity tldD2 - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD QTD2_k127_1374228_19 330214.NIDE4369 1.58e-39 150.0 COG3357@1|root,COG3357@2|Bacteria 2|Bacteria K Transcriptional regulator containing an HTH domain fused to a Zn-ribbon - - - ko:K07743 - - - - ko00000 - - - HTH_5,PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV QTD2_k127_1374228_25 269799.Gmet_3148 6.22e-10 63.0 2EQIW@1|root,33I4X@2|Bacteria,1P5T0@1224|Proteobacteria,432D5@68525|delta/epsilon subdivisions,2WX86@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_1374228_11 330214.NIDE4372 7.892e-97 323.0 COG3752@1|root,COG3752@2|Bacteria 2|Bacteria M Protein of unknown function (DUF1295) - - - - - - - - - - - - DUF1295 QTD2_k127_1374228_5 237368.SCABRO_03745 1.885e-191 610.0 COG1012@1|root,COG1012@2|Bacteria,2IXV2@203682|Planctomycetes 203682|Planctomycetes C Belongs to the aldehyde dehydrogenase family - - 1.2.1.3,1.2.1.39 ko:K00128,ko:K00146 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00360,ko00380,ko00410,ko00561,ko00620,ko00625,ko00643,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00360,map00380,map00410,map00561,map00620,map00625,map00643,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02536,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh QTD2_k127_1374228_0 330214.NIDE4377 0.0 1030.0 COG0488@1|root,COG0488@2|Bacteria,3J0WR@40117|Nitrospirae 40117|Nitrospirae S ABC transporter - - 3.6.3.25 ko:K06020 - - - - ko00000,ko01000 - - - ABC_tran,ABC_tran_Xtn QTD2_k127_1374228_10 330214.NIDE4381 8.781e-101 335.0 COG1073@1|root,COG1073@2|Bacteria 2|Bacteria S thiolester hydrolase activity MA20_24420 - - ko:K06889,ko:K07000 - - - - ko00000 - - - Abhydrolase_6,Hydrolase_4,UPF0227 QTD2_k127_1374228_18 330214.NIDE4382 2.716e-47 172.0 COG0400@1|root,COG0400@2|Bacteria,3J1DU@40117|Nitrospirae 40117|Nitrospirae S Alpha/beta hydrolase family - - - ko:K06999 - - - - ko00000 - - - Abhydrolase_2 QTD2_k127_137724_3 671143.DAMO_0159 2.861e-57 203.0 2DMP9@1|root,32SV1@2|Bacteria 2|Bacteria S Protein of unknown function (DUF3015) - - - - - - - - - - - - DUF3015 QTD2_k127_137724_4 1128421.JAGA01000002_gene1111 3.423e-29 125.0 COG0622@1|root,COG0622@2|Bacteria,2NQ04@2323|unclassified Bacteria 2|Bacteria S Calcineurin-like phosphoesterase superfamily domain - - - ko:K07095 - - - - ko00000 - - - Metallophos_2 QTD2_k127_137724_0 330214.NIDE4192 1.497e-152 490.0 COG4783@1|root,COG4783@2|Bacteria,3J19Q@40117|Nitrospirae 40117|Nitrospirae S Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - Peptidase_M48 QTD2_k127_137724_1 330214.NIDE4194 5.472e-127 408.0 COG2013@1|root,COG2013@2|Bacteria 2|Bacteria S Mitochondrial biogenesis AIM24 WQ51_05710 - - - - - - - - - - - AIM24 QTD2_k127_137724_2 1122603.ATVI01000005_gene2979 2.143e-76 271.0 COG2159@1|root,COG2159@2|Bacteria,1QDV1@1224|Proteobacteria,1RYCT@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Amidohydrolase - - - ko:K07045 - - - - ko00000 - - - Amidohydro_2 QTD2_k127_1442138_1 330214.NIDE1360 4.369e-172 554.0 COG0004@1|root,COG0004@2|Bacteria,3J0IS@40117|Nitrospirae 40117|Nitrospirae P Ammonium Transporter Family - - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp QTD2_k127_1442138_0 330214.NIDE1358 1.175e-280 872.0 COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,3J0EB@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source nadE - 6.3.5.1 ko:K01950 ko00760,ko01100,map00760,map01100 M00115 R00257 RC00010,RC00100 ko00000,ko00001,ko00002,ko01000 - - - CN_hydrolase,NAD_synthase QTD2_k127_1442138_3 471852.Tcur_2062 5.552e-30 134.0 COG0829@1|root,COG0829@2|Bacteria,2HHBD@201174|Actinobacteria,4EM89@85012|Streptosporangiales 201174|Actinobacteria O Required for maturation of urease via the functional incorporation of the urease nickel metallocenter ureD - - ko:K03190 - - - - ko00000 - - - UreD QTD2_k127_1442138_2 203119.Cthe_1813 1.787e-85 289.0 COG0378@1|root,COG0378@2|Bacteria,1TS00@1239|Firmicutes,25Q3T@186801|Clostridia,3WGXN@541000|Ruminococcaceae 186801|Clostridia H Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG ureG - - ko:K03189 - - - - ko00000 - - - cobW QTD2_k127_1442138_4 868595.Desca_0747 2.316e-26 117.0 COG0830@1|root,COG0830@2|Bacteria,1V2H0@1239|Firmicutes,24ETM@186801|Clostridia,262PC@186807|Peptococcaceae 186801|Clostridia J Required for maturation of urease via the functional incorporation of the urease nickel metallocenter ureF - - ko:K03188 - - - - ko00000 - - - UreF QTD2_k127_15977_2 330214.NIDE1236 1.021e-151 483.0 COG0501@1|root,COG0501@2|Bacteria,3J0QG@40117|Nitrospirae 40117|Nitrospirae O Peptidase family M48 htpX - - ko:K03799 - M00743 - - ko00000,ko00002,ko01000,ko01002 - - - Peptidase_M48 QTD2_k127_15977_4 330214.NIDE1235 2.544e-93 310.0 COG0386@1|root,COG0386@2|Bacteria 2|Bacteria O Belongs to the glutathione peroxidase family btuE - 1.11.1.22,1.11.1.9 ko:K00432,ko:K20207 ko00480,ko00590,ko04918,map00480,map00590,map04918 - R00274,R07034,R07035 RC00011,RC00982 ko00000,ko00001,ko01000 - - iJN678.slr1992 GSHPx QTD2_k127_15977_3 330214.NIDE1232 2.569e-148 485.0 COG2807@1|root,COG2807@2|Bacteria 2|Bacteria P transmembrane transport lacY - - ko:K02532,ko:K05820,ko:K08167,ko:K08218,ko:K08369 ko01501,map01501 M00628,M00713,M00714 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.1,2.A.1.25,2.A.1.27,2.A.1.3,2.A.1.5 - - LacY_symp,MFS_1 QTD2_k127_15977_10 545694.TREPR_0272 5.115e-05 53.0 COG2063@1|root,COG2063@2|Bacteria 2|Bacteria N Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation flgH - - ko:K02393 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - FlgH QTD2_k127_15977_7 330214.NIDE1230 7.435e-61 213.0 COG1610@1|root,COG1610@2|Bacteria,3J1F3@40117|Nitrospirae 40117|Nitrospirae S Yqey-like protein - - - ko:K09117 - - - - ko00000 - - - YqeY QTD2_k127_15977_5 330214.NIDE1229 1.383e-89 299.0 COG3437@1|root,COG3437@2|Bacteria 2|Bacteria T response regulator, receiver - - 3.1.3.3 ko:K03413,ko:K07315 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035,ko03021 - - - GGDEF,HATPase_c,HATPase_c_2,HisKA,Response_reg QTD2_k127_15977_1 330214.NIDE1228 4.72e-166 527.0 COG2199@1|root,COG3706@2|Bacteria,3J188@40117|Nitrospirae 40117|Nitrospirae T diguanylate cyclase - - - - - - - - - - - - GGDEF QTD2_k127_15977_0 330214.NIDE1046 3.388e-222 730.0 COG0642@1|root,COG0784@1|root,COG2202@1|root,COG2203@1|root,COG4191@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,COG4191@2|Bacteria 2|Bacteria T Histidine kinase barA - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - CBS,GAF,GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg,dCache_1 QTD2_k127_15977_9 56780.SYN_00227 1.787e-27 115.0 COG2198@1|root,COG2198@2|Bacteria,1NJUT@1224|Proteobacteria,42WXF@68525|delta/epsilon subdivisions,2WSRZ@28221|Deltaproteobacteria 28221|Deltaproteobacteria T (Hpt) domain - - - - - - - - - - - - Hpt QTD2_k127_1620309_1 330214.NIDE2735 6.355e-249 772.0 COG1109@1|root,COG1109@2|Bacteria,3J0E7@40117|Nitrospirae 40117|Nitrospirae G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate glmM - 5.4.2.10 ko:K03431 ko00520,ko01100,ko01130,map00520,map01100,map01130 - R02060 RC00408 ko00000,ko00001,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV QTD2_k127_1620309_4 909663.KI867150_gene841 1.232e-81 280.0 COG0294@1|root,COG0294@2|Bacteria,1MUIR@1224|Proteobacteria,42MMY@68525|delta/epsilon subdivisions,2WIXA@28221|Deltaproteobacteria,2MRE0@213462|Syntrophobacterales 28221|Deltaproteobacteria H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives folP - 2.5.1.15,2.7.6.3 ko:K00796,ko:K13941 ko00790,ko01100,map00790,map01100 M00126,M00840,M00841 R03066,R03067,R03503 RC00002,RC00017,RC00121,RC00842 ko00000,ko00001,ko00002,ko01000 - - - Pterin_bind QTD2_k127_1620309_0 330214.NIDE2737 0.0 1118.0 COG0465@1|root,COG0465@2|Bacteria,3J0AG@40117|Nitrospirae 40117|Nitrospirae D Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 QTD2_k127_1620309_3 330214.NIDE2738 2.665e-88 294.0 COG0634@1|root,COG0634@2|Bacteria,3J0NZ@40117|Nitrospirae 40117|Nitrospirae F Phosphoribosyl transferase domain hpt - 2.4.2.8 ko:K00760 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 - R00190,R01132,R01229,R02142,R08237,R08238,R08245 RC00063,RC00122 ko00000,ko00001,ko01000 - - - Pribosyltran QTD2_k127_1620309_2 330214.NIDE2739 2.219e-100 343.0 COG0037@1|root,COG0037@2|Bacteria,3J0SX@40117|Nitrospirae 40117|Nitrospirae D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine tilS - 6.3.4.19 ko:K04075 - - R09597 RC02633,RC02634 ko00000,ko01000,ko03016 - - - ATP_bind_3,TilS_C QTD2_k127_1631034_0 1121104.AQXH01000004_gene142 1.167e-134 442.0 COG1252@1|root,COG1252@2|Bacteria,4NE0H@976|Bacteroidetes,1IQYG@117747|Sphingobacteriia 976|Bacteroidetes C PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase ndh - 1.6.99.3 ko:K03885 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyr_redox_2 QTD2_k127_1631034_1 1380394.JADL01000002_gene1538 9.607e-101 339.0 COG0350@1|root,COG2169@1|root,COG0350@2|Bacteria,COG2169@2|Bacteria,1N2YQ@1224|Proteobacteria,2TQRX@28211|Alphaproteobacteria,2JPEG@204441|Rhodospirillales 204441|Rhodospirillales FL 6-O-methylguanine DNA methyltransferase, DNA binding domain - - 2.1.1.63 ko:K10778 - - - - ko00000,ko01000,ko03000,ko03400 - - - Ada_Zn_binding,DNA_binding_1,HTH_18,Methyltransf_1N QTD2_k127_1631993_1 330214.NIDE1632 2.127e-77 265.0 COG0751@1|root,COG0751@2|Bacteria,3J0F0@40117|Nitrospirae 40117|Nitrospirae J Glycyl-tRNA synthetase beta subunit glyS - 6.1.1.14 ko:K01879 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_1,tRNA_synt_2f QTD2_k127_1631993_0 330214.NIDE1634 3.006e-240 749.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,3J101@40117|Nitrospirae 40117|Nitrospirae G Belongs to the PEP-utilizing enzyme family ppdK - 2.7.9.1 ko:K01006 ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200 M00169,M00171,M00172,M00173 R00206 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N QTD2_k127_1632493_0 330214.NIDE3046 0.0 1370.0 COG0466@1|root,COG0466@2|Bacteria,3J0DQ@40117|Nitrospirae 40117|Nitrospirae O ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner - - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA,LON_substr_bdg,Lon_C QTD2_k127_1632493_2 330214.NIDE3045 3.342e-152 485.0 COG1210@1|root,COG1210@2|Bacteria,3J0B2@40117|Nitrospirae 40117|Nitrospirae M Nucleotidyl transferase galU - 2.7.7.9 ko:K00963 ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130 M00129,M00361,M00362,M00549 R00289 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase QTD2_k127_1632493_1 330214.NIDE3044 5.73e-321 996.0 COG4775@1|root,COG4775@2|Bacteria,3J0AC@40117|Nitrospirae 40117|Nitrospirae M Surface antigen - - - ko:K07277 - - - - ko00000,ko02000,ko03029 1.B.33 - - Bac_surface_Ag,POTRA QTD2_k127_1633994_2 330214.NIDE3827 2.134e-61 219.0 COG2854@1|root,COG2854@2|Bacteria,3J13Z@40117|Nitrospirae 40117|Nitrospirae Q Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07323 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - MlaC QTD2_k127_1633994_0 330214.NIDE3863 4.169e-86 294.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - - - - - - - - - - Usp QTD2_k127_1633994_1 330214.NIDE3860 5.396e-73 252.0 COG1926@1|root,COG1926@2|Bacteria,3J18T@40117|Nitrospirae 40117|Nitrospirae S Phosphoribosyl transferase domain - - - - - - - - - - - - Pribosyltran QTD2_k127_1643541_0 330214.NIDE3903 1.235e-99 329.0 COG0058@1|root,COG0058@2|Bacteria,3J0W1@40117|Nitrospirae 40117|Nitrospirae G Carbohydrate phosphorylase - - 2.4.1.1 ko:K00688 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R02111 - ko00000,ko00001,ko01000 - GT35 - Phosphorylase QTD2_k127_1648096_2 1112274.KI911560_gene1515 2.422e-10 65.0 2A0QB@1|root,30NUQ@2|Bacteria,1PJKW@1224|Proteobacteria,2W81U@28216|Betaproteobacteria,2KNCK@206350|Nitrosomonadales 206350|Nitrosomonadales - - - - - - - - - - - - - - - QTD2_k127_1648096_0 1121406.JAEX01000005_gene2868 1.594e-87 304.0 COG0683@1|root,COG0683@2|Bacteria,1MWR8@1224|Proteobacteria,42NI3@68525|delta/epsilon subdivisions,2WJ6P@28221|Deltaproteobacteria,2M856@213115|Desulfovibrionales 28221|Deltaproteobacteria E PFAM Extracellular ligand-binding receptor - - - - - - - - - - - - Peripla_BP_6 QTD2_k127_1648096_1 1268239.PALB_25720 2.503e-13 80.0 COG0823@1|root,COG1228@1|root,COG0823@2|Bacteria,COG1228@2|Bacteria,1MX3A@1224|Proteobacteria,1RMQZ@1236|Gammaproteobacteria,2Q039@267888|Pseudoalteromonadaceae 1236|Gammaproteobacteria QU COG0823 Periplasmic component of the Tol biopolymer transport system - - - - - - - - - - - - Amidohydro_1,PD40 QTD2_k127_1661209_1 1286631.X805_11130 2.106e-99 331.0 COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2VJ7X@28216|Betaproteobacteria,1KJBC@119065|unclassified Burkholderiales 28216|Betaproteobacteria E Belongs to the binding-protein-dependent transport system permease family urtB - - ko:K11960 ko02010,map02010 M00323 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4.4,3.A.1.4.5 - - BPD_transp_2 QTD2_k127_1661209_0 1380394.JADL01000008_gene3693 2.815e-116 387.0 COG4177@1|root,COG4177@2|Bacteria,1MUPI@1224|Proteobacteria,2TTN2@28211|Alphaproteobacteria,2JPNN@204441|Rhodospirillales 204441|Rhodospirillales E Belongs to the binding-protein-dependent transport system permease family - - - ko:K11961 ko02010,map02010 M00323 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4.4,3.A.1.4.5 - - BPD_transp_2 QTD2_k127_1661209_2 868595.Desca_0741 6.018e-97 323.0 COG4674@1|root,COG4674@2|Bacteria,1UIU8@1239|Firmicutes,25ES1@186801|Clostridia,267F1@186807|Peptococcaceae 186801|Clostridia S TIGRFAM ABC transporter, urea, ATP-binding protein, UrtD - - - ko:K11962 ko02010,map02010 M00323 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4.4,3.A.1.4.5 - - ABC_tran,BCA_ABC_TP_C QTD2_k127_1661209_4 1173027.Mic7113_2758 8.409e-75 258.0 COG0410@1|root,COG0410@2|Bacteria,1G0UF@1117|Cyanobacteria,1H9H3@1150|Oscillatoriales 1117|Cyanobacteria E TIGRFAM urea ABC transporter, ATP-binding protein UrtE urtE - - ko:K11963 ko02010,map02010 M00323 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4.4,3.A.1.4.5 - - ABC_tran QTD2_k127_1661209_5 204669.Acid345_4447 1.893e-26 123.0 COG2067@1|root,COG2067@2|Bacteria,3Y3JJ@57723|Acidobacteria,2JJB9@204432|Acidobacteriia 204432|Acidobacteriia I Putative beta-barrel porin-2, OmpL-like. bbp2 - - - - - - - - - - - - BBP2 QTD2_k127_1661209_3 1211777.BN77_p11228 1.55e-81 278.0 COG4413@1|root,COG4413@2|Bacteria,1N2FW@1224|Proteobacteria,2VGH5@28211|Alphaproteobacteria,4BDFE@82115|Rhizobiaceae 28211|Alphaproteobacteria E Urea transporter - - - ko:K08717 - - - - ko00000,ko02000 1.A.28.2 - - UT QTD2_k127_1676196_9 330214.NIDE1021 1.373e-85 285.0 COG2193@1|root,COG2193@2|Bacteria 2|Bacteria P ferroxidase activity bfr GO:0003674,GO:0003824,GO:0004322,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030003,GO:0033212,GO:0033214,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0071944,GO:0098771 1.16.3.1 ko:K03594 ko00860,map00860 - R00078 RC02758 ko00000,ko00001,ko01000 - - - Ferritin QTD2_k127_1676196_0 330214.NIDE1020 0.0 1348.0 COG0550@1|root,COG0551@1|root,COG0550@2|Bacteria,COG0551@2|Bacteria,3J0DN@40117|Nitrospirae 40117|Nitrospirae L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone topA - 5.99.1.2 ko:K03168 - - - - ko00000,ko01000,ko03032,ko03400 - - - Topoisom_bac,Toprim,zf-C4_Topoisom QTD2_k127_1676196_5 330214.NIDE1019 1.636e-127 418.0 COG0758@1|root,COG0758@2|Bacteria,3J0Q8@40117|Nitrospirae 40117|Nitrospirae L DNA recombination-mediator protein A - - - ko:K04096 - - - - ko00000 - - - DNA_processg_A,HHH_5 QTD2_k127_1676196_2 330214.NIDE1018 8.655e-276 853.0 COG1530@1|root,COG1530@2|Bacteria,3J0DK@40117|Nitrospirae 40117|Nitrospirae J Ribonuclease E/G family - - - ko:K08301 - - - - ko00000,ko01000,ko03009,ko03019 - - - RNase_E_G QTD2_k127_1676196_4 330214.NIDE1017 1.392e-191 602.0 COG0772@1|root,COG0772@2|Bacteria,3J0IA@40117|Nitrospirae 40117|Nitrospirae D Peptidoglycan polymerase that is essential for cell wall elongation mrdB - - ko:K05837 - - - - ko00000,ko03036 - - - FTSW_RODA_SPOVE QTD2_k127_1676196_1 330214.NIDE1016 1.349e-311 963.0 COG0768@1|root,COG0768@2|Bacteria,3J0FY@40117|Nitrospirae 40117|Nitrospirae M Penicillin-binding Protein dimerisation domain - - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase QTD2_k127_1676196_7 330214.NIDE1014 3.746e-108 357.0 COG1792@1|root,COG1792@2|Bacteria,3J0S3@40117|Nitrospirae 40117|Nitrospirae M shape-determining protein MreC mreC - - ko:K03570 - - - - ko00000,ko03036 9.B.157.1 - - MreC QTD2_k127_1676196_3 330214.NIDE1013 4.586e-206 644.0 COG1077@1|root,COG1077@2|Bacteria,3J0BS@40117|Nitrospirae 40117|Nitrospirae D Actin - - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl QTD2_k127_1676196_10 330214.NIDE1012 3.707e-54 194.0 COG1714@1|root,COG1714@2|Bacteria,3J0U3@40117|Nitrospirae 40117|Nitrospirae S RDD family - - - - - - - - - - - - RDD QTD2_k127_1676196_8 330214.NIDE1011 3.793e-88 297.0 COG0760@1|root,COG0760@2|Bacteria,3J1BR@40117|Nitrospirae 40117|Nitrospirae O SurA N-terminal domain - - 5.2.1.8 ko:K03770 - - - - ko00000,ko01000,ko03110 - - - SurA_N_3 QTD2_k127_1676196_6 330214.NIDE1010 6.997e-113 375.0 COG0809@1|root,COG0809@2|Bacteria,3J0HB@40117|Nitrospirae 40117|Nitrospirae J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth QTD2_k127_1676196_12 330214.NIDE1009 0.0008989 42.0 COG2385@1|root,COG2385@2|Bacteria,3J15K@40117|Nitrospirae 40117|Nitrospirae D Stage II sporulation protein - - - ko:K06381 - - - - ko00000 - - - SpoIID QTD2_k127_1712427_0 1232410.KI421415_gene2960 3.968e-49 190.0 COG1360@1|root,COG1360@2|Bacteria,1MU4S@1224|Proteobacteria,42RH7@68525|delta/epsilon subdivisions,2WP03@28221|Deltaproteobacteria,43SHH@69541|Desulfuromonadales 28221|Deltaproteobacteria N OmpA family - - - ko:K02557 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - OmpA QTD2_k127_1731256_0 330214.NIDE1632 4.955e-195 621.0 COG0751@1|root,COG0751@2|Bacteria,3J0F0@40117|Nitrospirae 40117|Nitrospirae J Glycyl-tRNA synthetase beta subunit glyS - 6.1.1.14 ko:K01879 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_1,tRNA_synt_2f QTD2_k127_1731256_1 330214.NIDE1631 3.79e-167 529.0 COG0752@1|root,COG0752@2|Bacteria,3J0F5@40117|Nitrospirae 40117|Nitrospirae J Glycyl-tRNA synthetase alpha subunit glyQ - 6.1.1.14 ko:K01878 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2e QTD2_k127_1731256_3 330214.NIDE1624 3.348e-66 228.0 COG1959@1|root,COG1959@2|Bacteria 2|Bacteria K 2 iron, 2 sulfur cluster binding cymR - - ko:K13643 - - - - ko00000,ko03000 - - - Rrf2 QTD2_k127_1731256_2 671143.DAMO_1030 7.972e-96 319.0 COG0730@1|root,COG0730@2|Bacteria 2|Bacteria S response to heat - - - ko:K07090 - - - - ko00000 - - - TauE QTD2_k127_1766223_4 330214.NIDE0758 5.646e-39 146.0 COG0472@1|root,COG0472@2|Bacteria,3J0C4@40117|Nitrospirae 40117|Nitrospirae M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan mraY - 2.7.8.13 ko:K01000 ko00550,ko01100,ko01502,map00550,map01100,map01502 - R05629,R05630 RC00002,RC02753 ko00000,ko00001,ko01000,ko01011 9.B.146 - - Glycos_transf_4,MraY_sig1 QTD2_k127_1766223_1 330214.NIDE0759 9.556e-196 620.0 COG0771@1|root,COG0771@2|Bacteria,3J0HT@40117|Nitrospirae 40117|Nitrospirae M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) murD - 6.3.2.9 ko:K01925 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R02783 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase_C,Mur_ligase_M QTD2_k127_1766223_2 330214.NIDE0760 3.662e-166 530.0 COG0772@1|root,COG0772@2|Bacteria,3J0M8@40117|Nitrospirae 40117|Nitrospirae D Cell cycle protein ftsW - - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FTSW_RODA_SPOVE QTD2_k127_1766223_3 330214.NIDE0761 6.053e-133 433.0 COG0707@1|root,COG0707@2|Bacteria,3J0JS@40117|Nitrospirae 40117|Nitrospirae M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) murG - 2.4.1.227 ko:K02563 ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112 - R05032,R05662 RC00005,RC00049 ko00000,ko00001,ko01000,ko01011 - GT28 - Glyco_tran_28_C,Glyco_transf_28 QTD2_k127_1766223_0 330214.NIDE0762 1.676e-250 781.0 COG0773@1|root,COG0773@2|Bacteria,3J0D5@40117|Nitrospirae 40117|Nitrospirae M Belongs to the MurCDEF family murC - 6.3.2.8 ko:K01924 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R03193 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M QTD2_k127_1787217_4 330214.NIDE3162 1.888e-13 71.0 COG3850@1|root,COG4251@1|root,COG3850@2|Bacteria,COG4251@2|Bacteria 2|Bacteria T photoreceptor activity - - - ko:K14978 ko02020,map02020 M00663 - - ko00000,ko00001,ko00002,ko01001,ko02022 - - - CHASE8,DUF3365,GAF_2,HAMP,HATPase_c,HisKA,PilJ,Response_reg,SpoIIE QTD2_k127_1787217_0 330214.NIDE3156 1.71e-145 471.0 COG1476@1|root,COG1910@1|root,COG1476@2|Bacteria,COG1910@2|Bacteria,3J13A@40117|Nitrospirae 40117|Nitrospirae K PBP superfamily domain - - 2.10.1.1 ko:K03750,ko:K07219 ko00790,ko01100,map00790,map01100 - R09735 RC03462 ko00000,ko00001,ko01000 - - - MoCF_biosynth,MoeA_C,MoeA_N,PBP_like QTD2_k127_1787217_1 330214.NIDE3155 1.887e-105 350.0 COG0725@1|root,COG0725@2|Bacteria 2|Bacteria P tungstate binding - - - ko:K02020 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 3.A.1.8 - - SBP_bac_11 QTD2_k127_1841798_4 330214.NIDE0561 5.682e-287 884.0 COG0535@1|root,COG0535@2|Bacteria,3J10V@40117|Nitrospirae 40117|Nitrospirae C Iron-sulfur cluster-binding domain - - - - - - - - - - - - Fer4_12,Radical_SAM,SPASM QTD2_k127_1841798_2 330214.NIDE0562 0.0 1238.0 COG0589@1|root,COG1592@1|root,COG0589@2|Bacteria,COG1592@2|Bacteria 2|Bacteria C Rubrerythrin usp1 - 1.6.3.4 ko:K22405 - - - - ko00000,ko01000 - - - DinB_2,Rubrerythrin,Usp QTD2_k127_1841798_3 330214.NIDE0563 3.829e-317 975.0 COG1032@1|root,COG1032@2|Bacteria,3J0WM@40117|Nitrospirae 40117|Nitrospirae C Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - Radical_SAM QTD2_k127_1841798_6 330214.NIDE0564 3.513e-131 422.0 COG0500@1|root,COG2226@2|Bacteria,3J0S6@40117|Nitrospirae 40117|Nitrospirae H Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) menG - 2.1.1.163,2.1.1.201 ko:K03183 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116,M00117 R04990,R04993,R06859,R08774,R09736 RC00003,RC01253,RC01662 ko00000,ko00001,ko00002,ko01000 - - - Ubie_methyltran QTD2_k127_1841798_0 330214.NIDE0568 0.0 1535.0 COG0178@1|root,COG0178@2|Bacteria,3J0C7@40117|Nitrospirae 40117|Nitrospirae L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate - - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran QTD2_k127_1841798_8 330214.NIDE0571 1.229e-58 204.0 COG3169@1|root,COG3169@2|Bacteria 2|Bacteria S Protein conserved in bacteria - - - ko:K09922 - - - - ko00000 - - - DMT_6 QTD2_k127_1841798_1 330214.NIDE0577 0.0 1279.0 COG0433@1|root,COG0433@2|Bacteria 2|Bacteria S helicase activity - - - - - - - - - - - - DUF853,DUF87 QTD2_k127_1841798_5 330214.NIDE0582 8.628e-203 654.0 COG1752@1|root,COG3153@1|root,COG1752@2|Bacteria,COG3153@2|Bacteria 2|Bacteria S transferase activity, transferring acyl groups - - 2.3.1.59,2.3.1.82 ko:K14658,ko:K17840,ko:K18815 - M00664 - - br01600,ko00000,ko00002,ko01000,ko01504 - - - Acetyltransf_1,Acetyltransf_10,Acetyltransf_7,Patatin QTD2_k127_18424_21 330214.NIDE0952 2.182e-125 408.0 COG2206@1|root,COG2206@2|Bacteria 2|Bacteria T PFAM metal-dependent phosphohydrolase, HD sub domain - - 3.6.1.11,3.6.1.40 ko:K01524,ko:K07012 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000,ko02048 - - - HD QTD2_k127_18424_34 330214.NIDE0953 1.444e-57 205.0 COG0432@1|root,COG0432@2|Bacteria 2|Bacteria S Uncharacterised protein family UPF0047 - - - - - - - - - - - - UPF0047 QTD2_k127_18424_12 330214.NIDE0954 2.154e-171 547.0 COG0265@1|root,COG0265@2|Bacteria,3J0X9@40117|Nitrospirae 2|Bacteria M Evidence 2a Function of homologous gene experimentally demonstrated in an other organism degP - 1.3.1.74 ko:K08070 - - - - ko00000,ko01000 - - - PDZ_2,Trypsin_2 QTD2_k127_18424_43 580332.Slit_1052 1.447e-18 91.0 COG0515@1|root,COG0515@2|Bacteria,1NN82@1224|Proteobacteria,2VXXH@28216|Betaproteobacteria 28216|Betaproteobacteria KLT serine threonine protein kinase - - - - - - - - - - - - - QTD2_k127_18424_17 330214.NIDE0965 6.494e-136 439.0 COG0429@1|root,COG0429@2|Bacteria 2|Bacteria S poly(3-hydroxybutyrate) depolymerase activity - GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0044237,GO:0044238,GO:0044255,GO:0071704 - ko:K07019 - - - - ko00000 - - - Abhydrolase_1,Abhydrolase_6,Hydrolase_4 QTD2_k127_18424_37 330214.NIDE0968 1.542e-47 172.0 COG1144@1|root,COG1144@2|Bacteria,3J1DG@40117|Nitrospirae 40117|Nitrospirae C Oxidoreductase - - - - - - - - - - - - - QTD2_k127_18424_16 330214.NIDE0969 1.676e-140 447.0 COG1014@1|root,COG1014@2|Bacteria,3J0Y6@40117|Nitrospirae 40117|Nitrospirae C Pyruvate ferredoxin/flavodoxin oxidoreductase - - 1.2.7.1 ko:K00172 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - POR QTD2_k127_18424_10 330214.NIDE0970 1.87e-181 576.0 COG1013@1|root,COG1013@2|Bacteria,3J0Z2@40117|Nitrospirae 40117|Nitrospirae C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - 1.2.7.1 ko:K00170 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C QTD2_k127_18424_4 330214.NIDE0971 2.154e-256 793.0 COG0674@1|root,COG0674@2|Bacteria,3J0WN@40117|Nitrospirae 40117|Nitrospirae C Pyruvate:ferredoxin oxidoreductase core domain II - - 1.2.7.1 ko:K00169 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - PFOR_II,POR_N QTD2_k127_18424_20 330214.NIDE0972 8.931e-126 403.0 COG0226@1|root,COG0226@2|Bacteria,3J0YH@40117|Nitrospirae 40117|Nitrospirae P Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - - - - - - - - - - - CO_dh QTD2_k127_18424_46 1038866.KB902802_gene7085 2.019e-06 60.0 COG0457@1|root,COG4461@1|root,COG0457@2|Bacteria,COG4461@2|Bacteria,1RKBA@1224|Proteobacteria,2TRAV@28211|Alphaproteobacteria,3JWA4@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - LprI,TPR_1,TPR_11,TPR_2,TPR_8 QTD2_k127_18424_45 1384056.N787_00520 9.077e-17 83.0 COG2350@1|root,COG2350@2|Bacteria,1MZ9Z@1224|Proteobacteria,1S8UC@1236|Gammaproteobacteria,1X7QC@135614|Xanthomonadales 135614|Xanthomonadales S BolA family transcriptional regulator yciI - - ko:K09780 - - - - ko00000 - - - YCII QTD2_k127_18424_35 330214.NIDE0974 3.333e-50 181.0 COG4911@1|root,COG4911@2|Bacteria 2|Bacteria S Uncharacterized conserved protein (DUF2203) - - - - - - - - - - - - DUF2203 QTD2_k127_18424_3 330214.NIDE0975 5.468e-266 820.0 COG1158@1|root,COG1158@2|Bacteria,3J0BK@40117|Nitrospirae 40117|Nitrospirae K Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template rho - - ko:K03628 ko03018,map03018 - - - ko00000,ko00001,ko03019,ko03021 - - - ATP-synt_ab,Rho_N,Rho_RNA_bind QTD2_k127_18424_40 330214.NIDE0976 5.439e-35 134.0 COG0254@1|root,COG0254@2|Bacteria,3J0S4@40117|Nitrospirae 40117|Nitrospirae J Binds the 23S rRNA rpmE - - ko:K02909 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L31 QTD2_k127_18424_13 330214.NIDE0977 1.042e-165 528.0 COG0216@1|root,COG0216@2|Bacteria,3J0F6@40117|Nitrospirae 40117|Nitrospirae J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA prfA - - ko:K02835 - - - - ko00000,ko03012 - - - PCRF,RF-1 QTD2_k127_18424_33 330214.NIDE0978 3.557e-68 242.0 COG2890@1|root,COG2890@2|Bacteria,3J0N5@40117|Nitrospirae 40117|Nitrospirae J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 ko:K02493 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03012 - - - MTS QTD2_k127_18424_8 330214.NIDE0979 3.655e-196 620.0 COG0766@1|root,COG0766@2|Bacteria,3J0EE@40117|Nitrospirae 40117|Nitrospirae M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase QTD2_k127_18424_30 330214.NIDE0980 1.167e-91 306.0 COG0040@1|root,COG0040@2|Bacteria,3J0T5@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity hisG GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 ko:K00765 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002,ko01000 - - - HisG,HisG_C QTD2_k127_18424_6 330214.NIDE0981 6.597e-213 674.0 COG0141@1|root,COG0141@2|Bacteria,3J0C6@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine hisD - 1.1.1.23 ko:K00013 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01158,R01163,R03012 RC00099,RC00242,RC00463 ko00000,ko00001,ko00002,ko01000 - - - Histidinol_dh QTD2_k127_18424_24 330214.NIDE0982 1.312e-111 362.0 COG0131@1|root,COG0131@2|Bacteria,3J0JI@40117|Nitrospirae 40117|Nitrospirae E Imidazoleglycerol-phosphate dehydratase hisB GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.19 ko:K01693 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R03457 RC00932 ko00000,ko00001,ko00002,ko01000 - - - IGPD QTD2_k127_18424_28 330214.NIDE0983 1.717e-95 316.0 COG0118@1|root,COG0118@2|Bacteria,3J0K7@40117|Nitrospirae 40117|Nitrospirae E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR hisH - - ko:K02501 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - GATase QTD2_k127_18424_22 330214.NIDE0985 3.945e-124 400.0 COG0106@1|root,COG0106@2|Bacteria,3J0KA@40117|Nitrospirae 40117|Nitrospirae E Histidine biosynthesis protein hisA GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 ko:K01814 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04640 RC00945 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth QTD2_k127_18424_18 330214.NIDE0986 1.674e-134 432.0 COG0107@1|root,COG0107@2|Bacteria,3J0GV@40117|Nitrospirae 40117|Nitrospirae E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit hisF GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - ko:K02500 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth QTD2_k127_18424_27 330214.NIDE0987 1.439e-95 317.0 COG0139@1|root,COG0140@1|root,COG0139@2|Bacteria,COG0140@2|Bacteria,3J0T7@40117|Nitrospirae 40117|Nitrospirae E Phosphoribosyl-AMP cyclohydrolase hisI - 3.5.4.19,3.6.1.31 ko:K01496,ko:K11755 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035,R04037 RC00002,RC01055 ko00000,ko00001,ko00002,ko01000 - - - PRA-CH,PRA-PH QTD2_k127_18424_36 330214.NIDE0988 2.974e-48 175.0 COG0537@1|root,COG0537@2|Bacteria,3J0TA@40117|Nitrospirae 40117|Nitrospirae FG Scavenger mRNA decapping enzyme C-term binding - - - ko:K02503 - - - - ko00000,ko04147 - - - HIT QTD2_k127_18424_5 330214.NIDE0989 1.055e-243 766.0 COG0358@1|root,COG0358@2|Bacteria,3J0IN@40117|Nitrospirae 40117|Nitrospirae L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication dnaG - - ko:K02316 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - Toprim_4,Toprim_N,zf-CHC2 QTD2_k127_18424_1 330214.NIDE0990 4.303e-319 985.0 COG0568@1|root,COG0568@2|Bacteria,3J0E4@40117|Nitrospirae 40117|Nitrospirae K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released - - - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 QTD2_k127_18424_31 330214.NIDE0991 1.2e-85 291.0 COG1579@1|root,COG1579@2|Bacteria,3J0UV@40117|Nitrospirae 40117|Nitrospirae S C4-type zinc ribbon domain - - - ko:K07164 - - - - ko00000 - - - zf-RING_7 QTD2_k127_18424_26 330214.NIDE0992 5.238e-101 334.0 COG1039@1|root,COG1039@2|Bacteria 2|Bacteria L RNA-DNA hybrid ribonuclease activity rnhC GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 ko:K03471 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DUF3378,RNase_HII QTD2_k127_18424_19 330214.NIDE0993 5.536e-126 409.0 COG0501@1|root,COG0501@2|Bacteria 2|Bacteria O metalloendopeptidase activity - - - - - - - - - - - - Peptidase_M48 QTD2_k127_18424_0 330214.NIDE0997 0.0 1095.0 COG0028@1|root,COG0028@2|Bacteria,3J0D6@40117|Nitrospirae 40117|Nitrospirae H Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N QTD2_k127_18424_29 330214.NIDE0998 6.516e-92 303.0 COG0440@1|root,COG0440@2|Bacteria,3J0K8@40117|Nitrospirae 40117|Nitrospirae E ACT domain - - 2.2.1.6 ko:K01653 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - ACT,ACT_5,ALS_ss_C QTD2_k127_18424_7 330214.NIDE0999 1.138e-201 631.0 COG0059@1|root,COG0059@2|Bacteria,3J0DW@40117|Nitrospirae 40117|Nitrospirae H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate ilvC - 1.1.1.86 ko:K00053 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R03051,R04439,R04440,R05068,R05069,R05071 RC00726,RC00836,RC00837,RC01726 ko00000,ko00001,ko00002,ko01000 - - - IlvC,IlvN QTD2_k127_18424_25 330214.NIDE1000 2.452e-101 333.0 COG0688@1|root,COG0688@2|Bacteria,3J0KD@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) psd - 4.1.1.65 ko:K01613 ko00564,ko01100,ko01110,map00564,map01100,map01110 M00093 R02055 RC00299 ko00000,ko00001,ko00002,ko01000 - - - PS_Dcarbxylase QTD2_k127_18424_23 330214.NIDE1001 2.89e-112 368.0 COG1183@1|root,COG1183@2|Bacteria,3J0KW@40117|Nitrospirae 40117|Nitrospirae I CDP-alcohol phosphatidyltransferase - - 2.7.8.8 ko:K17103 ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110 M00093 R01800 RC00002,RC00017,RC02795 ko00000,ko00001,ko00002,ko01000 - - - CDP-OH_P_transf QTD2_k127_18424_2 330214.NIDE1002 7.591e-285 882.0 COG0119@1|root,COG0119@2|Bacteria,3J0F7@40117|Nitrospirae 40117|Nitrospirae E Belongs to the alpha-IPM synthase homocitrate synthase family leuA - 2.3.3.13 ko:K01649 ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230 M00432 R01213 RC00004,RC00470,RC02754 br01601,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like,LeuA_dimer QTD2_k127_18424_38 330214.NIDE1004 2.068e-40 152.0 COG0662@1|root,COG0662@2|Bacteria 2|Bacteria G Cupin 2, conserved barrel domain protein - - - - - - - - - - - - Cupin_2 QTD2_k127_18424_9 330214.NIDE1005 2.593e-195 614.0 COG0473@1|root,COG0473@2|Bacteria,3J0JQ@40117|Nitrospirae 40117|Nitrospirae C Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate leuB - 1.1.1.85 ko:K00052 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R00994,R04426,R10052 RC00084,RC00417,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh QTD2_k127_18424_15 330214.NIDE1006 4.577e-144 467.0 COG3391@1|root,COG3391@2|Bacteria,3J19W@40117|Nitrospirae 2|Bacteria S NHL repeat - - - - - - - - - - - - Cadherin,NHL,TIG QTD2_k127_18424_11 330214.NIDE1007 1.233e-172 546.0 COG0136@1|root,COG0136@2|Bacteria,3J0BR@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate asd - 1.2.1.11 ko:K00133 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R02291 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC QTD2_k127_18424_41 330214.NIDE1008 4.647e-24 103.0 2DNS1@1|root,32YVX@2|Bacteria,3J1CZ@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF2905) - - - - - - - - - - - - DUF2905 QTD2_k127_18424_14 330214.NIDE1009 1.581e-145 473.0 COG2385@1|root,COG2385@2|Bacteria,3J15K@40117|Nitrospirae 40117|Nitrospirae D Stage II sporulation protein - - - ko:K06381 - - - - ko00000 - - - SpoIID QTD2_k127_1843477_1 1144325.PMI22_00578 2.116e-69 244.0 2C2X7@1|root,2ZTZE@2|Bacteria,1RE9N@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - QTD2_k127_1843477_3 243233.MCA0469 2.19e-10 68.0 2C852@1|root,32YB2@2|Bacteria,1N9HY@1224|Proteobacteria,1SCRT@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Domain of unknown function (DUF4136) - - - - - - - - - - - - DUF4136 QTD2_k127_1843477_2 234267.Acid_5452 7.807e-41 159.0 292MF@1|root,2ZQ5C@2|Bacteria 2|Bacteria S Protein of unknown function (DUF3047) - - - - - - - - - - - - DUF3047 QTD2_k127_1843477_0 227086.JGI_V11_33711 4.187e-71 244.0 2BBKE@1|root,2S0Y6@2759|Eukaryota 2759|Eukaryota - - - - - - - - - - - - - - - QTD2_k127_1854292_1 330214.NIDE1889 3.884e-67 231.0 COG0229@1|root,COG0229@2|Bacteria,3J17K@40117|Nitrospirae 40117|Nitrospirae C SelR domain msrB - 1.8.4.12 ko:K07305 - - - - ko00000,ko01000 - - - SelR QTD2_k127_1854292_0 330214.NIDE1890 0.0 1207.0 COG0466@1|root,COG0466@2|Bacteria,3J0DQ@40117|Nitrospirae 40117|Nitrospirae O ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner - - 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA,LON_substr_bdg,Lon_C QTD2_k127_1902974_2 330214.NIDE1686 5.626e-154 505.0 COG0845@1|root,COG0845@2|Bacteria,3J13H@40117|Nitrospirae 40117|Nitrospirae M HlyD family secretion protein - - - - - - - - - - - - HlyD_D23 QTD2_k127_1902974_0 330214.NIDE1687 0.0 1613.0 COG0841@1|root,COG0841@2|Bacteria,3J103@40117|Nitrospirae 40117|Nitrospirae V AcrB/AcrD/AcrF family - - - - - - - - - - - - ACR_tran QTD2_k127_1902974_5 330214.NIDE1688 8.331e-26 113.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator kdpE - - ko:K03413 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - Response_reg QTD2_k127_1902974_4 204669.Acid345_0700 3.012e-53 196.0 2EFRH@1|root,339HI@2|Bacteria,3Y7RW@57723|Acidobacteria,2JN1K@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - QTD2_k127_1902974_1 330214.NIDE3180 3.596e-217 689.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE3180|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_1902974_6 1385515.N791_06300 9.215e-26 107.0 COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,1S3PI@1236|Gammaproteobacteria,1X643@135614|Xanthomonadales 135614|Xanthomonadales J Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide trmL - 2.1.1.207 ko:K03216 - - - - ko00000,ko01000,ko03016 - - - SpoU_methylase QTD2_k127_1906750_0 330214.NIDE3163 2.77e-217 681.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system frgC - - ko:K07714 ko02020,map02020 M00500 - - ko00000,ko00001,ko00002,ko02022 - - - FHA,GAF_2,HTH_8,Pkinase,Response_reg,Sigma54_activat QTD2_k127_1906750_1 330214.NIDE3162 2.932e-191 609.0 COG3850@1|root,COG4251@1|root,COG3850@2|Bacteria,COG4251@2|Bacteria 2|Bacteria T photoreceptor activity - - - ko:K14978 ko02020,map02020 M00663 - - ko00000,ko00001,ko00002,ko01001,ko02022 - - - CHASE8,DUF3365,GAF_2,HAMP,HATPase_c,HisKA,PilJ,Response_reg,SpoIIE QTD2_k127_1906956_0 330214.NIDE1244 1.658e-175 556.0 COG0686@1|root,COG0686@2|Bacteria 2|Bacteria E alanine dehydrogenase activity ald GO:0000286,GO:0001666,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009628,GO:0009653,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016638,GO:0019752,GO:0030154,GO:0030312,GO:0030435,GO:0032502,GO:0036293,GO:0043436,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0055114,GO:0070482,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.4.1.1 ko:K00259 ko00250,ko00430,ko01100,map00250,map00430,map01100 - R00396 RC00008 ko00000,ko00001,ko01000 - - iAF987.Gmet_1099 AlaDh_PNT_C,AlaDh_PNT_N QTD2_k127_1906956_3 1111728.ATYS01000005_gene831 0.0006215 44.0 28Z00@1|root,2ZKSP@2|Bacteria,1P60B@1224|Proteobacteria,1SVSK@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_1906956_2 290397.Adeh_0694 3.716e-15 78.0 COG1254@1|root,COG1254@2|Bacteria,1N6NU@1224|Proteobacteria,42V8V@68525|delta/epsilon subdivisions,2WRKG@28221|Deltaproteobacteria,2Z1JK@29|Myxococcales 28221|Deltaproteobacteria C acylphosphatase activity acyP GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 ko:K01512 ko00620,ko00627,ko01120,map00620,map00627,map01120 - R00317,R01421,R01515 RC00043 ko00000,ko00001,ko01000 - - - Acylphosphatase QTD2_k127_1906956_1 330214.NIDE1246 1.324e-75 257.0 COG0568@1|root,COG0568@2|Bacteria,3J0E4@40117|Nitrospirae 40117|Nitrospirae K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released - - - ko:K03086,ko:K03087 ko02026,ko05111,map02026,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma70_r1_2,Sigma70_r2,Sigma70_r4 QTD2_k127_1912158_1 123214.PERMA_1351 4.887e-26 119.0 COG1633@1|root,COG1814@1|root,COG1633@2|Bacteria,COG1814@2|Bacteria,2G4UT@200783|Aquificae 200783|Aquificae S VIT family - - - - - - - - - - - - Rubrerythrin,VIT1 QTD2_k127_1912158_0 330214.NIDE0843 5.854e-320 983.0 COG1032@1|root,COG1032@2|Bacteria,3J18Y@40117|Nitrospirae 40117|Nitrospirae C B12 binding domain - - - - - - - - - - - - B12-binding,Radical_SAM QTD2_k127_1912158_2 1340493.JNIF01000004_gene29 8.072e-25 104.0 COG0664@1|root,COG0664@2|Bacteria,3Y69I@57723|Acidobacteria 57723|Acidobacteria K SMART cyclic nucleotide-binding - - - - - - - - - - - - HTH_Crp_2,cNMP_binding QTD2_k127_1925801_0 330214.NIDE3473 1.078e-109 368.0 COG1538@1|root,COG1538@2|Bacteria,3J0N2@40117|Nitrospirae 40117|Nitrospirae M Evidence 2b Function of strongly homologous gene - - - ko:K18139 ko01501,ko02024,map01501,map02024 M00642,M00643,M00647,M00718,M00768,M00822 - - ko00000,ko00001,ko00002,ko01504,ko02000 1.B.17,2.A.6.2 - - OEP QTD2_k127_1925801_1 1380394.JADL01000017_gene481 7.18e-14 81.0 2AG76@1|root,316C8@2|Bacteria,1PXB5@1224|Proteobacteria,2UY7R@28211|Alphaproteobacteria,2JY2K@204441|Rhodospirillales 204441|Rhodospirillales S Domain of unknown function (DUF4410) - - - - - - - - - - - - DUF4410 QTD2_k127_1925801_2 1283300.ATXB01000001_gene395 5.069e-06 52.0 28PW7@1|root,32EDN@2|Bacteria,1N0AP@1224|Proteobacteria,1SF08@1236|Gammaproteobacteria,1XGXY@135618|Methylococcales 1236|Gammaproteobacteria S Protein of unknown function (DUF3313) - - - - - - - - - - - - DUF3313 QTD2_k127_1934314_11 330214.NIDE3347 2.052e-111 370.0 COG1287@1|root,COG1287@2|Bacteria 2|Bacteria S oligosaccharyl transferase activity - - - - - - - - - - - - DUF2723 QTD2_k127_1934314_12 330214.NIDE3346 3.403e-86 295.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glycos_transf_2 QTD2_k127_1934314_2 330214.NIDE3344 1.205e-236 741.0 COG0265@1|root,COG0750@1|root,COG0265@2|Bacteria,COG0750@2|Bacteria,3J0VW@40117|Nitrospirae 40117|Nitrospirae O Trypsin - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 QTD2_k127_1934314_4 330214.NIDE3343 6.495e-156 497.0 COG0805@1|root,COG0805@2|Bacteria,3J0PJ@40117|Nitrospirae 40117|Nitrospirae U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes tatC - - ko:K03118 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - TatC QTD2_k127_1934314_3 330214.NIDE3342 2.502e-199 621.0 COG0489@1|root,COG0489@2|Bacteria,3J10K@40117|Nitrospirae 40117|Nitrospirae D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP - - - - - - - - - - - - ParA QTD2_k127_1934314_1 330214.NIDE3341 1.393e-241 750.0 COG0303@1|root,COG0303@2|Bacteria,3J0MX@40117|Nitrospirae 40117|Nitrospirae H Probable molybdopterin binding domain - - 2.10.1.1 ko:K03750 ko00790,ko01100,map00790,map01100 - R09735 RC03462 ko00000,ko00001,ko01000 - - - MoCF_biosynth,MoeA_C,MoeA_N QTD2_k127_1934314_13 330214.NIDE3340 4.826e-82 275.0 COG1763@1|root,COG1763@2|Bacteria 2|Bacteria H Mo-molybdopterin cofactor metabolic process mobB GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 2.10.1.1,2.7.7.77 ko:K03750,ko:K03753,ko:K13818 ko00790,ko01100,map00790,map01100 - R09735,R11581 RC03462 ko00000,ko00001,ko01000 - - iB21_1397.B21_03691,iBWG_1329.BWG_3527,iECBD_1354.ECBD_4174,iECDH1ME8569_1439.ECDH1ME8569_3728,iEcDH1_1363.EcDH1_4130,iJO1366.b3856,iSbBS512_1146.SbBS512_E4328,iY75_1357.Y75_RS17805 MoCF_biosynth,MobB,MoeA_C,MoeA_N QTD2_k127_1934314_9 330214.NIDE3339 2.156e-121 392.0 COG3005@1|root,COG3005@2|Bacteria 2|Bacteria C denitrification pathway - - - ko:K02569,ko:K03532,ko:K15876 ko00910,ko01120,ko02020,map00910,map01120,map02020 M00530 R05712 RC00176 ko00000,ko00001,ko00002,ko02000 5.A.3.4 - - Cytochrom_NNT,Cytochrome_C7 QTD2_k127_1934314_10 330214.NIDE3338 1.624e-118 385.0 COG1131@1|root,COG1131@2|Bacteria,3J116@40117|Nitrospirae 40117|Nitrospirae V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran QTD2_k127_1934314_8 330214.NIDE3335 1.365e-131 423.0 COG1682@1|root,COG1682@2|Bacteria 2|Bacteria GM macromolecule localization - - - ko:K01421,ko:K01992,ko:K09690 ko02010,map02010 M00250,M00254 - - ko00000,ko00001,ko00002,ko02000 3.A.1,3.A.1.103 - - ABC2_membrane,ABC2_membrane_3,DUF3533 QTD2_k127_1934314_16 330214.NIDE3327 1.65e-43 164.0 COG0724@1|root,COG0724@2|Bacteria 2|Bacteria K RNA recognition motif rbpA - - - - - - - - - - - RRM_1 QTD2_k127_1934314_17 497964.CfE428DRAFT_5261 2.405e-15 84.0 COG4191@1|root,COG4191@2|Bacteria,46TV0@74201|Verrucomicrobia 2|Bacteria T ATP-binding region ATPase domain protein - - - - - - - - - - - - HATPase_c,HisKA,Response_reg QTD2_k127_1934314_6 330214.NIDE3318 1.087e-152 496.0 COG1293@1|root,COG1293@2|Bacteria 2|Bacteria K actin binding - - - - - - - - - - - - DUF814,FbpA QTD2_k127_1934314_7 330214.NIDE3315 2.079e-141 460.0 COG3291@1|root,COG3291@2|Bacteria 2|Bacteria S metallopeptidase activity - - - - - - - - - - - - Big_3_2,Cu_amine_oxidN1,F5_F8_type_C,IgGFc_binding,PKD QTD2_k127_1934314_0 330214.NIDE3314 5.587e-298 925.0 COG0531@1|root,COG0531@2|Bacteria 2|Bacteria E amino acid - - - - - - - - - - - - AA_permease_2 QTD2_k127_1934314_14 330214.NIDE3313 1.007e-70 247.0 COG2132@1|root,COG2132@2|Bacteria 2|Bacteria Q Multicopper oxidase - - 1.16.3.3,1.7.2.1 ko:K00368,ko:K07233,ko:K22349 ko00910,ko01120,map00910,map01120 M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 - - - Copper-bind,Cu-oxidase_2,Cu-oxidase_3 QTD2_k127_1951510_1 861299.J421_1872 1.073e-92 308.0 COG2303@1|root,COG2303@2|Bacteria 2|Bacteria E choline dehydrogenase activity - - - - - - - - - - - - FAD_binding_2,GMC_oxred_C,GMC_oxred_N QTD2_k127_1951510_0 211165.AJLN01000061_gene3947 1.405e-118 387.0 COG0346@1|root,COG0346@2|Bacteria,1G29P@1117|Cyanobacteria,1JK2A@1189|Stigonemataceae 1117|Cyanobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase QTD2_k127_1961287_2 330214.NIDE0544 3.351e-93 314.0 COG2984@1|root,COG2984@2|Bacteria 2|Bacteria S ABC transporter substrate binding protein - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind QTD2_k127_1961287_0 330214.NIDE0543 8.698e-225 720.0 COG0642@1|root,COG2205@2|Bacteria 330214.NIDE0543|- T PhoQ Sensor - - - - - - - - - - - - - QTD2_k127_1961287_1 330214.NIDE3387 5.515e-115 381.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_2026820_2 330214.NIDE2051 6.593e-27 111.0 COG1136@1|root,COG1136@2|Bacteria,3J0IT@40117|Nitrospirae 40117|Nitrospirae V Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner lolD - - ko:K09810 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.125 - - ABC_tran QTD2_k127_2026820_0 330214.NIDE2052 1.887e-200 631.0 COG4591@1|root,COG4591@2|Bacteria,3J0EF@40117|Nitrospirae 40117|Nitrospirae M MacB-like periplasmic core domain - - - ko:K09808 ko02010,map02010 M00255 - - ko00000,ko00001,ko00002,ko02000 3.A.1.125 - - FtsX,MacB_PCD QTD2_k127_2026820_1 330214.NIDE2053 9.123e-87 288.0 COG1190@1|root,COG1190@2|Bacteria,3J0AW@40117|Nitrospirae 40117|Nitrospirae J tRNA synthetases class II (D, K and N) lysS - 6.1.1.6 ko:K04567 ko00970,map00970 M00359,M00360 R03658 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon QTD2_k127_2078234_0 330214.NIDE4155 1.479e-198 625.0 293H1@1|root,2ZQZ6@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_2078234_1 317936.Nos7107_4762 9.087e-75 254.0 COG0412@1|root,COG0412@2|Bacteria,1FZX6@1117|Cyanobacteria,1HK1K@1161|Nostocales 1117|Cyanobacteria Q Dienelactone hydrolase family - - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH QTD2_k127_2160403_3 330214.NIDE3869 4.294e-74 255.0 296YQ@1|root,2ZU7A@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_2160403_4 330214.NIDE3871 2.294e-58 206.0 COG5592@1|root,COG5592@2|Bacteria 2|Bacteria I hemerythrin HHE cation binding domain - - - - - - - - - - - - Hemerythrin,Phasin_2 QTD2_k127_2160403_1 330214.NIDE3873 4.054e-171 540.0 COG1013@1|root,COG1013@2|Bacteria,3J0KG@40117|Nitrospirae 40117|Nitrospirae C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - 1.2.7.1 ko:K00170 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C QTD2_k127_2160403_0 330214.NIDE3874 2.29e-216 676.0 COG0674@1|root,COG0674@2|Bacteria,3J0HY@40117|Nitrospirae 40117|Nitrospirae C Pyruvate:ferredoxin oxidoreductase core domain II - - 1.2.7.1 ko:K00169 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - PFOR_II,POR_N QTD2_k127_2160403_2 330214.NIDE3875 1.286e-110 364.0 COG1014@1|root,COG1144@1|root,COG1014@2|Bacteria,COG1144@2|Bacteria,3J0TG@40117|Nitrospirae 40117|Nitrospirae C Pyruvate ferredoxin/flavodoxin oxidoreductase - - 1.2.7.1 ko:K00172 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - POR QTD2_k127_2160403_9 716928.AJQT01000017_gene4668 1.401e-09 63.0 COG1734@1|root,COG1734@2|Bacteria,1N8K6@1224|Proteobacteria,2UCF1@28211|Alphaproteobacteria,4BG7X@82115|Rhizobiaceae 28211|Alphaproteobacteria T DnaK suppressor protein dskA - - - - - - - - - - - zf-dskA_traR QTD2_k127_2160403_10 1340493.JNIF01000003_gene1428 2.048e-07 57.0 COG4980@1|root,COG4980@2|Bacteria,3Y5IA@57723|Acidobacteria 57723|Acidobacteria S YtxH-like protein - - - - - - - - - - - - YtxH QTD2_k127_2166719_5 330214.NIDE3198 3.725e-226 711.0 COG1538@1|root,COG1538@2|Bacteria 2|Bacteria MU efflux transmembrane transporter activity tolC - - ko:K12340 ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133 M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko02044 1.B.17,2.A.6.2 - - OEP QTD2_k127_2166719_9 330214.NIDE3190 8.404e-169 545.0 COG2234@1|root,COG2234@2|Bacteria 2|Bacteria DZ aminopeptidase activity - - - - - - - - - - - - PA,Peptidase_M28 QTD2_k127_2166719_27 330214.NIDE3327 4.911e-43 161.0 COG0724@1|root,COG0724@2|Bacteria 2|Bacteria K RNA recognition motif rbpA - - - - - - - - - - - RRM_1 QTD2_k127_2166719_7 330214.NIDE3184 2.456e-177 565.0 COG0513@1|root,COG0513@2|Bacteria 2|Bacteria L helicase activity rhlE - 3.6.4.13 ko:K11927 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - DEAD,Helicase_C QTD2_k127_2166719_0 330214.NIDE3077 0.0 1139.0 COG0556@1|root,COG0556@2|Bacteria,3J0FS@40117|Nitrospirae 40117|Nitrospirae L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage uvrB - - ko:K03702 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - Helicase_C,ResIII,UVR,UvrB QTD2_k127_2166719_30 330214.NIDE3076 9.744e-33 128.0 29W29@1|root,30HKU@2|Bacteria,3J1EN@40117|Nitrospirae 40117|Nitrospirae S Domain of unknown function (DUF4321) - - - - - - - - - - - - DUF4321 QTD2_k127_2166719_4 330214.NIDE3074 1.359e-237 740.0 COG0541@1|root,COG0541@2|Bacteria,3J0DT@40117|Nitrospirae 40117|Nitrospirae U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY ffh - 3.6.5.4 ko:K03106 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko01000,ko02044 3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9 - - SRP54,SRP54_N,SRP_SPB QTD2_k127_2166719_29 330214.NIDE3073 4.473e-41 155.0 COG0228@1|root,COG0228@2|Bacteria,3J0UI@40117|Nitrospirae 40117|Nitrospirae J Belongs to the bacterial ribosomal protein bS16 family rpsP GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02959 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S16 QTD2_k127_2166719_24 330214.NIDE3072 1.771e-45 170.0 COG0806@1|root,COG0806@2|Bacteria 2|Bacteria J ribosome binding rimM GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 - ko:K02860 - - - - ko00000,ko03009 - - - PRC,RimM QTD2_k127_2166719_17 370438.PTH_1719 8.37e-86 291.0 COG0336@1|root,COG0336@2|Bacteria,1TPBV@1239|Firmicutes,247JF@186801|Clostridia,260JP@186807|Peptococcaceae 186801|Clostridia J Belongs to the RNA methyltransferase TrmD family trmD - 2.1.1.228 ko:K00554 - - R00597 RC00003,RC00334 ko00000,ko01000,ko03016 - - - tRNA_m1G_MT QTD2_k127_2166719_22 330214.NIDE3070 2.838e-55 197.0 COG0335@1|root,COG0335@2|Bacteria,3J0MJ@40117|Nitrospirae 40117|Nitrospirae J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site rplS GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02884 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L19 QTD2_k127_2166719_18 330214.NIDE3069 9.15e-84 286.0 COG0164@1|root,COG0164@2|Bacteria,3J0P5@40117|Nitrospirae 40117|Nitrospirae L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids rnhB - 3.1.26.4 ko:K03470 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - RNase_HII QTD2_k127_2166719_28 330214.NIDE3068 4.478e-42 157.0 COG0792@1|root,COG0792@2|Bacteria,3J1ER@40117|Nitrospirae 40117|Nitrospirae L Uncharacterised protein family UPF0102 - - - ko:K07460 - - - - ko00000 - - - UPF0102 QTD2_k127_2166719_15 330214.NIDE3067 8.015e-105 346.0 COG2884@1|root,COG2884@2|Bacteria,3J139@40117|Nitrospirae 40117|Nitrospirae D ABC transporter ftsE - - ko:K09812 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - ABC_tran QTD2_k127_2166719_14 330214.NIDE3066 1.049e-106 356.0 COG2177@1|root,COG2177@2|Bacteria,3J18Q@40117|Nitrospirae 40117|Nitrospirae D Belongs to the ABC-4 integral membrane protein family. FtsX subfamily - - - ko:K09811 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - FtsX QTD2_k127_2166719_11 330214.NIDE3065 6.648e-152 493.0 COG4942@1|root,COG4942@2|Bacteria,3J0SP@40117|Nitrospirae 40117|Nitrospirae D Peptidase family M23 - - - ko:K21471 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23 QTD2_k127_2166719_6 330214.NIDE3064 2.598e-220 690.0 COG0793@1|root,COG0793@2|Bacteria,3J09Y@40117|Nitrospirae 40117|Nitrospirae M tail specific protease - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ,Peptidase_S41 QTD2_k127_2166719_23 330214.NIDE3063 3.786e-47 177.0 COG1796@1|root,COG1796@2|Bacteria 2|Bacteria L DNA-directed DNA polymerase activity dpbF - 3.1.11.5 ko:K02347,ko:K03581,ko:K04477 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - HHH_5,HHH_8 QTD2_k127_2166719_32 330214.NIDE3061 1.776e-19 91.0 COG2104@1|root,COG2104@2|Bacteria,3J1CM@40117|Nitrospirae 40117|Nitrospirae H ThiS family - - - ko:K03154 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS QTD2_k127_2166719_10 330214.NIDE3060 7.033e-154 488.0 COG2022@1|root,COG2022@2|Bacteria,3J0EI@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S thiG - 2.8.1.10 ko:K03149 ko00730,ko01100,map00730,map01100 - R10247 RC03096,RC03097,RC03461 ko00000,ko00001,ko01000 - - - ThiG QTD2_k127_2166719_21 330214.NIDE3059 1.057e-55 201.0 COG0352@1|root,COG0352@2|Bacteria,3J0QS@40117|Nitrospirae 40117|Nitrospirae H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) thiE2 - 2.5.1.3 ko:K00788 ko00730,ko01100,map00730,map01100 M00127 R03223,R10712 RC00224,RC03255,RC03397 ko00000,ko00001,ko00002,ko01000 - - - TMP-TENI QTD2_k127_2166719_1 330214.NIDE3058 0.0 1011.0 COG1222@1|root,COG1222@2|Bacteria 2|Bacteria O protein catabolic process arc GO:0000302,GO:0000502,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010035,GO:0010498,GO:0010499,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019941,GO:0022623,GO:0022624,GO:0030163,GO:0030312,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042802,GO:0043170,GO:0043335,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044424,GO:0044464,GO:0044877,GO:0050896,GO:0051409,GO:0051603,GO:0051704,GO:0051716,GO:0070628,GO:0070887,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071944,GO:0097366,GO:0140030,GO:0140035,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1902494,GO:1905368,GO:1905369 - ko:K13527 ko03050,map03050 M00342 - - ko00000,ko00001,ko00002,ko03051 - - - AAA,Prot_ATP_ID_OB QTD2_k127_2166719_3 330214.NIDE3057 3.903e-258 802.0 COG4122@1|root,COG4122@2|Bacteria 2|Bacteria E O-methyltransferase activity dop GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006464,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0016810,GO:0016811,GO:0017076,GO:0018193,GO:0018205,GO:0019538,GO:0019941,GO:0030163,GO:0030554,GO:0032446,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0070490,GO:0070647,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 3.5.1.119,6.3.1.19 ko:K13571,ko:K20814 - M00342 R11207 RC00090,RC00096 ko00000,ko00002,ko01000,ko03051 - - - Pup_ligase QTD2_k127_2166719_13 330214.NIDE3056 1.466e-128 415.0 COG0638@1|root,COG0638@2|Bacteria 2|Bacteria O Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine prcB GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004298,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005839,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010498,GO:0016020,GO:0016787,GO:0019538,GO:0019774,GO:0019899,GO:0019941,GO:0030163,GO:0032991,GO:0035375,GO:0040007,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044424,GO:0044464,GO:0051603,GO:0051704,GO:0070003,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 ko:K03433 ko03050,map03050 M00342,M00343 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03051 - - - Proteasome QTD2_k127_2166719_16 330214.NIDE3055 9.14e-105 346.0 COG0638@1|root,COG0638@2|Bacteria 2|Bacteria O Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine - - 3.4.25.1 ko:K03432 ko03050,map03050 M00342,M00343 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03051 - - - Proteasome QTD2_k127_2166719_2 330214.NIDE3054 1.593e-279 863.0 COG0638@1|root,COG0638@2|Bacteria 2|Bacteria O Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine pafA GO:0000166,GO:0000302,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010035,GO:0010498,GO:0016020,GO:0016740,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0018193,GO:0018205,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030312,GO:0030554,GO:0032446,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034614,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044464,GO:0050896,GO:0051409,GO:0051603,GO:0051704,GO:0051716,GO:0070490,GO:0070647,GO:0070887,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071944,GO:0097159,GO:0097366,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170 6.3.1.19 ko:K13571 - M00342 R11207 RC00090,RC00096 ko00000,ko00002,ko01000,ko03051 - - - Pup_ligase QTD2_k127_2166719_12 330214.NIDE3053 4.953e-142 458.0 COG0739@1|root,COG0739@2|Bacteria,3J16B@40117|Nitrospirae 40117|Nitrospirae M Peptidase family M23 - - - - - - - - - - - - Peptidase_M23 QTD2_k127_2166719_8 330214.NIDE1569 1.329e-175 563.0 COG1301@1|root,COG1301@2|Bacteria 2|Bacteria C dicarboxylic acid transport - - - ko:K03309 - - - - ko00000 2.A.23 - - SDF QTD2_k127_2166719_25 637390.AFOH01000025_gene1036 4.293e-44 166.0 COG0449@1|root,COG0449@2|Bacteria,1RGWX@1224|Proteobacteria,1SPE9@1236|Gammaproteobacteria 1236|Gammaproteobacteria M ORF6N domain - - - - - - - - - - - - ORF6N QTD2_k127_2166719_34 1173026.Glo7428_3084 7.24e-10 63.0 COG3217@1|root,COG3217@2|Bacteria,1G56F@1117|Cyanobacteria 1117|Cyanobacteria S PFAM MOSC N-terminal beta barrel domain - - - ko:K07140 - - - - ko00000 - - - MOSC,MOSC_N QTD2_k127_2175581_6 330214.NIDE3447 5.584e-117 383.0 COG0156@1|root,COG0156@2|Bacteria,3J0XU@40117|Nitrospirae 2|Bacteria H Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide bioF GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0030312,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0071944,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29,2.3.1.47 ko:K00639,ko:K00652 ko00260,ko00780,ko01100,map00260,map00780,map01100 M00123,M00573,M00577 R00371,R03210,R10124 RC00004,RC00039,RC00394,RC02725 ko00000,ko00001,ko00002,ko01000,ko01007 - - iJN678.bioF,iNJ661.Rv1569 Aminotran_1_2 QTD2_k127_2175581_7 330214.NIDE3446 2.667e-91 306.0 COG4105@1|root,COG4105@2|Bacteria 2|Bacteria S cell envelope organization bamD - - ko:K05807,ko:K08309 - - - - ko00000,ko01000,ko01011,ko02000 1.B.33.1 GH23 - YfiO QTD2_k127_2175581_4 330214.NIDE3445 1.855e-171 550.0 COG0741@1|root,COG1388@1|root,COG0741@2|Bacteria,COG1388@2|Bacteria,3J0J4@40117|Nitrospirae 40117|Nitrospirae M Lysin motif - - - ko:K08307 - - - - ko00000,ko01000,ko01011 - - - LysM,SLT QTD2_k127_2175581_2 330214.NIDE3444 2.485e-210 659.0 COG0075@1|root,COG0075@2|Bacteria,3J0FC@40117|Nitrospirae 40117|Nitrospirae E Evidence 2b Function of strongly homologous gene - - - - - - - - - - - - Aminotran_5 QTD2_k127_2175581_0 330214.NIDE3443 3.366e-280 869.0 COG0111@1|root,COG4747@1|root,COG0111@2|Bacteria,COG4747@2|Bacteria,3J0DZ@40117|Nitrospirae 40117|Nitrospirae E Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family serA - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C,ACT QTD2_k127_2175581_5 330214.NIDE3442 1.668e-131 434.0 COG3705@1|root,COG3705@2|Bacteria,3J13R@40117|Nitrospirae 40117|Nitrospirae E Histidyl-tRNA synthetase - - - ko:K02502 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002 - - - tRNA-synt_His QTD2_k127_2175581_3 330214.NIDE3441 1.987e-186 592.0 COG0305@1|root,COG0305@2|Bacteria,3J0EZ@40117|Nitrospirae 40117|Nitrospirae L Participates in initiation and elongation during chromosome replication - - 3.6.4.12 ko:K02314 ko03030,ko04112,map03030,map04112 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB,DnaB_C QTD2_k127_2175581_1 330214.NIDE3440 2.236e-229 725.0 COG0457@1|root,COG0457@2|Bacteria,3J0MH@40117|Nitrospirae 40117|Nitrospirae S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_19,TPR_2,TPR_8 QTD2_k127_2175733_8 330214.NIDE4107 1.071e-117 384.0 COG0496@1|root,COG0496@2|Bacteria,3J0IG@40117|Nitrospirae 40117|Nitrospirae S Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates surE - 3.1.3.5 ko:K03787 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - SurE QTD2_k127_2175733_11 330214.NIDE4108 4.228e-53 190.0 COG0789@1|root,COG0789@2|Bacteria,3J0VF@40117|Nitrospirae 40117|Nitrospirae K helix_turn_helix, mercury resistance - - - - - - - - - - - - MerR_1 QTD2_k127_2175733_12 330214.NIDE4109 6.846e-47 169.0 COG0776@1|root,COG0776@2|Bacteria,3J1CY@40117|Nitrospirae 40117|Nitrospirae L bacterial (prokaryotic) histone like domain - - - ko:K04764 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding QTD2_k127_2175733_0 330214.NIDE4110 2.438e-285 885.0 COG0119@1|root,COG0119@2|Bacteria,3J0DC@40117|Nitrospirae 40117|Nitrospirae E Belongs to the alpha-IPM synthase homocitrate synthase family - - 2.3.3.13 ko:K01649 ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230 M00432 R01213 RC00004,RC00470,RC02754 br01601,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like,LeuA_dimer QTD2_k127_2175733_4 330214.NIDE4111 9.678e-216 676.0 COG0527@1|root,COG0527@2|Bacteria,3J0AZ@40117|Nitrospirae 40117|Nitrospirae E ACT domain - - 2.7.2.4 ko:K00928 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R00480 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,ACT,ACT_7 QTD2_k127_2175733_7 330214.NIDE4112 7.75e-148 480.0 COG3635@1|root,COG3635@2|Bacteria,3J0YA@40117|Nitrospirae 40117|Nitrospirae G Metalloenzyme superfamily - - 5.4.2.12 ko:K15635 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000 - - - Metalloenzyme,PhosphMutase QTD2_k127_2175733_6 330214.NIDE4113 1.145e-190 599.0 COG0498@1|root,COG0498@2|Bacteria,3J0FI@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine thrC2 - 4.2.3.1 ko:K01733 ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230 M00018 R01466,R05086 RC00017,RC00526 ko00000,ko00001,ko00002,ko01000 - - - PALP QTD2_k127_2175733_5 330214.NIDE4114 8.244e-214 671.0 COG0440@1|root,COG0460@1|root,COG0440@2|Bacteria,COG0460@2|Bacteria,3J0G1@40117|Nitrospirae 40117|Nitrospirae E Homoserine dehydrogenase - - 1.1.1.3 ko:K00003 ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230 M00017,M00018 R01773,R01775 RC00087 ko00000,ko00001,ko00002,ko01000 - - - ACT,Homoserine_dh,NAD_binding_3 QTD2_k127_2175733_2 330214.NIDE4115 6.83e-238 739.0 COG0436@1|root,COG0436@2|Bacteria,3J0ED@40117|Nitrospirae 40117|Nitrospirae E Aminotransferase class I and II - - - ko:K14261 - - - - ko00000,ko01000,ko01007 - - - Aminotran_1_2 QTD2_k127_2175733_9 330214.NIDE4117 1.667e-116 380.0 COG0854@1|root,COG0854@2|Bacteria,3J0KZ@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate pdxJ GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 ko:K03474 ko00750,ko01100,map00750,map01100 M00124 R05838 RC01476 ko00000,ko00001,ko00002,ko01000 - - - PdxJ QTD2_k127_2175733_3 330214.NIDE4119 1.466e-221 700.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,3J0J1@40117|Nitrospirae 40117|Nitrospirae H Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - 4.2.1.136,5.1.99.6 ko:K17758,ko:K17759 - - - - ko00000,ko01000 - - - Carb_kinase,YjeF_N QTD2_k127_2175733_13 330214.NIDE4120 7.143e-43 164.0 COG0802@1|root,COG0802@2|Bacteria,3J1AZ@40117|Nitrospirae 40117|Nitrospirae S Threonylcarbamoyl adenosine biosynthesis protein TsaE - - - ko:K06925 - - - - ko00000,ko03016 - - - TsaE QTD2_k127_2175733_1 1499967.BAYZ01000065_gene6091 1.338e-270 859.0 COG0249@1|root,COG0249@2|Bacteria,2NNN6@2323|unclassified Bacteria 2|Bacteria L that it carries out the mismatch recognition step. This protein has a weak ATPase activity mutS GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03555 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V QTD2_k127_2178_0 330214.NIDE3937 0.0 3082.0 COG2132@1|root,COG2132@2|Bacteria 2|Bacteria Q Multicopper oxidase - - 1.16.3.3,1.7.2.1 ko:K00368,ko:K07233,ko:K22349 ko00910,ko01120,map00910,map01120 M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 - - - Copper-bind,Cu-oxidase_2,Cu-oxidase_3 QTD2_k127_2198868_49 644107.SL1157_0518 2.17e-09 58.0 2DREZ@1|root,33BFB@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_2198868_20 330214.NIDE0395 8.509e-135 435.0 COG0223@1|root,COG0223@2|Bacteria,3J0GW@40117|Nitrospirae 40117|Nitrospirae J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus fmt GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 ko:K00604 ko00670,ko00970,map00670,map00970 - R03940 RC00026,RC00165 ko00000,ko00001,ko01000 - - - Formyl_trans_C,Formyl_trans_N QTD2_k127_2198868_16 330214.NIDE0396 1.434e-142 469.0 COG0144@1|root,COG0781@1|root,COG0144@2|Bacteria,COG0781@2|Bacteria,3J136@40117|Nitrospirae 40117|Nitrospirae J 16S rRNA methyltransferase RsmB/F - - 2.1.1.176 ko:K03500 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,NusB QTD2_k127_2198868_25 330214.NIDE0397 2.854e-103 340.0 COG0036@1|root,COG0036@2|Bacteria,3J0IZ@40117|Nitrospirae 40117|Nitrospirae G Ribulose-phosphate 3 epimerase family rpe - 5.1.3.1 ko:K01783 ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01529 RC00540 ko00000,ko00001,ko00002,ko01000 - - - Ribul_P_3_epim QTD2_k127_2198868_4 330214.NIDE0398 2.674e-253 790.0 COG0016@1|root,COG0016@2|Bacteria,3J0SW@40117|Nitrospirae 40117|Nitrospirae J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type pheS - 6.1.1.20 ko:K01889 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Phe_tRNA-synt_N,tRNA-synt_2d QTD2_k127_2198868_5 330214.NIDE0399 1.562e-249 781.0 COG0072@1|root,COG0072@2|Bacteria,3J0U7@40117|Nitrospirae 40117|Nitrospirae J B3/4 domain - - 6.1.1.20 ko:K01890 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - B5 QTD2_k127_2198868_37 330214.NIDE0400 4.093e-55 194.0 COG0292@1|root,COG0292@2|Bacteria,3J0SF@40117|Nitrospirae 40117|Nitrospirae J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit rplT GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - ko:K02887 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L20 QTD2_k127_2198868_48 4113.PGSC0003DMT400029160 5.154e-10 62.0 COG0291@1|root,2S11I@2759|Eukaryota,37V64@33090|Viridiplantae,3GJB2@35493|Streptophyta,44KAJ@71274|asterids 35493|Streptophyta J Belongs to the bacterial ribosomal protein bL35 family - GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0009507,GO:0009536,GO:0015934,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - ko:K02916 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L35p QTD2_k127_2198868_27 330214.NIDE0402 1.427e-88 295.0 COG0290@1|root,COG0290@2|Bacteria,3J0T0@40117|Nitrospirae 40117|Nitrospirae J Translation initiation factor IF-3, C-terminal domain - - - ko:K02520 - - - - ko00000,ko03012,ko03029 - - - IF3_C,IF3_N QTD2_k127_2198868_1 330214.NIDE0403 0.0 1054.0 COG0441@1|root,COG0441@2|Bacteria,3J0F4@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) thrS - 6.1.1.3 ko:K01868 ko00970,map00970 M00359,M00360 R03663 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_2b,tRNA_SAD QTD2_k127_2198868_43 330214.NIDE0404 6.379e-36 139.0 COG0776@1|root,COG0776@2|Bacteria,3J0V6@40117|Nitrospirae 40117|Nitrospirae L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions - - - ko:K03530 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding QTD2_k127_2198868_38 330214.NIDE0405 1.286e-53 195.0 COG2901@1|root,COG2901@2|Bacteria 2|Bacteria K sequence-specific DNA binding fis GO:0000018,GO:0000229,GO:0000785,GO:0000786,GO:0000787,GO:0000789,GO:0000976,GO:0000984,GO:0000985,GO:0001017,GO:0001046,GO:0001047,GO:0001067,GO:0001121,GO:0001130,GO:0001131,GO:0001140,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016032,GO:0016070,GO:0018130,GO:0019042,GO:0019045,GO:0019046,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031421,GO:0032359,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044374,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044815,GO:0045892,GO:0045893,GO:0045911,GO:0045934,GO:0045935,GO:0046483,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - ko:K03557,ko:K07712 ko02020,ko05111,map02020,map05111 M00497 - - ko00000,ko00001,ko00002,ko02022,ko03000,ko03036,ko03400 - - - HTH_8 QTD2_k127_2198868_39 330214.NIDE0406 2.321e-49 179.0 COG1959@1|root,COG1959@2|Bacteria 2|Bacteria K 2 iron, 2 sulfur cluster binding iscR - 2.8.1.7 ko:K04487,ko:K13643 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03000,ko03016,ko03029 - - - Rrf2 QTD2_k127_2198868_0 330214.NIDE0407 0.0 1289.0 COG0155@1|root,COG0425@1|root,COG0155@2|Bacteria,COG0425@2|Bacteria,3J11D@40117|Nitrospirae 40117|Nitrospirae C Nitrite and sulphite reductase 4Fe-4S domain - - 1.7.1.15,1.8.7.1 ko:K00362,ko:K00392 ko00910,ko00920,ko01100,ko01120,map00910,map00920,map01100,map01120 M00176,M00530 R00787,R00859,R03600 RC00065,RC00176 ko00000,ko00001,ko00002,ko01000 - - - NIR_SIR,NIR_SIR_ferr QTD2_k127_2198868_24 330214.NIDE0408 1.249e-113 371.0 COG0175@1|root,COG0175@2|Bacteria 2|Bacteria EH sulfate reduction cysH GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016671,GO:0044424,GO:0044464,GO:0055114 1.8.4.10,1.8.4.8,2.7.1.25 ko:K00390,ko:K00860 ko00230,ko00920,ko01100,ko01120,map00230,map00920,map01100,map01120 M00176 R00509,R02021,R04928 RC00002,RC00007,RC00078,RC02862 ko00000,ko00001,ko00002,ko01000 - - - PAPS_reduct QTD2_k127_2198868_17 330214.NIDE0409 7.219e-142 460.0 COG0547@1|root,COG0547@2|Bacteria,3J17P@40117|Nitrospirae 40117|Nitrospirae E Glycosyl transferase family, a/b domain - - 2.4.2.18 ko:K00766 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R01073 RC00440 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 QTD2_k127_2198868_14 330214.NIDE0410 4.304e-162 511.0 COG0175@1|root,COG0175@2|Bacteria 2|Bacteria EH sulfate reduction cysD - 1.8.4.10,1.8.4.8,2.7.7.4 ko:K00390,ko:K00957 ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130 M00176,M00596 R00529,R02021,R04929 RC00007,RC02809,RC02862,RC02889 ko00000,ko00001,ko00002,ko01000 - - - PAPS_reduct QTD2_k127_2198868_3 330214.NIDE0411 6.532e-311 960.0 COG0529@1|root,COG2895@1|root,COG0529@2|Bacteria,COG2895@2|Bacteria 2|Bacteria P sulfate adenylyltransferase (ATP) activity cysC - 2.7.1.25,2.7.7.4 ko:K00860,ko:K00955,ko:K00956 ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130 M00176,M00596 R00509,R00529,R04928,R04929 RC00002,RC00078,RC02809,RC02889 ko00000,ko00001,ko00002,ko01000 - - - APS_kinase,GTP_EFTU,GTP_EFTU_D3 QTD2_k127_2198868_11 330214.NIDE0412 6.451e-178 560.0 COG0489@1|root,COG0489@2|Bacteria 2|Bacteria D protein tyrosine kinase activity - - - ko:K03593 - - - - ko00000,ko03029,ko03036 - - - ParA QTD2_k127_2198868_22 330214.NIDE0413 3.062e-126 412.0 2DQ3Q@1|root,334KX@2|Bacteria 2|Bacteria S Proto-chlorophyllide reductase 57 kd subunit bchB - - - - - - - - - - - PCP_red QTD2_k127_2198868_32 330214.NIDE0414 1.294e-73 255.0 COG4244@1|root,COG4244@2|Bacteria 2|Bacteria E Membrane - - - - - - - - - - - - Cyt-b5,DUF2231,Fn3_assoc,PSCyt1,PSCyt2,PSD1 QTD2_k127_2198868_19 330214.NIDE0415 1.609e-135 435.0 COG0217@1|root,COG0217@2|Bacteria,3J0DM@40117|Nitrospirae 40117|Nitrospirae K Transcriptional regulator - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - - - - - - - - - - Transcrip_reg QTD2_k127_2198868_33 330214.NIDE0416 7.46e-72 248.0 COG0632@1|root,COG0632@2|Bacteria,3J0VA@40117|Nitrospirae 40117|Nitrospirae L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB ruvA - 3.6.4.12 ko:K03550 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - HHH_5,RuvA_C,RuvA_N QTD2_k127_2198868_13 330214.NIDE0418 4.062e-175 553.0 COG2255@1|root,COG2255@2|Bacteria,3J0AU@40117|Nitrospirae 40117|Nitrospirae L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing ruvB - 3.6.4.12 ko:K03551 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvB_C,RuvB_N QTD2_k127_2198868_7 330214.NIDE0419 2.058e-207 647.0 COG0077@1|root,COG1605@1|root,COG0077@2|Bacteria,COG1605@2|Bacteria,3J0A9@40117|Nitrospirae 40117|Nitrospirae E Chorismate mutase type II - - 4.2.1.51,5.4.99.5 ko:K14170 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00024,M00025 R00691,R01373,R01715 RC00360,RC03116 ko00000,ko00001,ko00002,ko01000 - - - ACT,CM_2,PDT QTD2_k127_2198868_10 330214.NIDE0420 7.11e-182 574.0 COG0079@1|root,COG0079@2|Bacteria,3J0XY@40117|Nitrospirae 40117|Nitrospirae E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 QTD2_k127_2198868_9 330214.NIDE0421 1.979e-198 621.0 COG2876@1|root,COG2876@2|Bacteria,3J0A5@40117|Nitrospirae 40117|Nitrospirae E NeuB family - - 2.5.1.54 ko:K03856 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01826 RC00435 ko00000,ko00001,ko00002,ko01000 - - - DAHP_synth_1 QTD2_k127_2198868_21 330214.NIDE0422 2.261e-133 433.0 COG0287@1|root,COG0287@2|Bacteria,3J0SQ@40117|Nitrospirae 40117|Nitrospirae C Prephenate dehydrogenase - - 1.3.1.12 ko:K04517 ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230 M00025 R01728 RC00125 ko00000,ko00001,ko00002,ko01000 - - - PDH QTD2_k127_2198868_8 330214.NIDE0423 9.695e-207 650.0 COG0128@1|root,COG0128@2|Bacteria,3J0BZ@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate aroA GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 ko:K00800 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03460 RC00350 ko00000,ko00001,ko00002,ko01000 - - - EPSP_synthase QTD2_k127_2198868_30 330214.NIDE0424 1.802e-84 286.0 COG0283@1|root,COG0283@2|Bacteria,3J0MY@40117|Nitrospirae 40117|Nitrospirae F Belongs to the cytidylate kinase family. Type 1 subfamily cmk GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 ko:K00945 ko00240,ko01100,map00240,map01100 M00052 R00158,R00512,R01665 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Cytidylate_kin QTD2_k127_2198868_28 330214.NIDE0425 5.044e-88 295.0 COG0204@1|root,COG0204@2|Bacteria,3J16H@40117|Nitrospirae 40117|Nitrospirae I Phosphate acyltransferases - - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase QTD2_k127_2198868_2 330214.NIDE0426 1.42e-321 989.0 COG0539@1|root,COG1185@1|root,COG0539@2|Bacteria,COG1185@2|Bacteria,3J0CA@40117|Nitrospirae 40117|Nitrospirae J thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence - - - ko:K02945 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - S1 QTD2_k127_2198868_18 330214.NIDE0427 4.204e-136 438.0 COG0616@1|root,COG0616@2|Bacteria,3J0J0@40117|Nitrospirae 40117|Nitrospirae OU Peptidase family S49 - - - ko:K04773 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S49 QTD2_k127_2198868_41 330214.NIDE0428 2.783e-46 172.0 COG0776@1|root,COG0776@2|Bacteria,3J19J@40117|Nitrospirae 40117|Nitrospirae L bacterial (prokaryotic) histone like domain - - - ko:K05788 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding QTD2_k127_2198868_15 330214.NIDE0429 1.938e-158 506.0 2C1IB@1|root,2ZG3S@2|Bacteria 2|Bacteria S Proto-chlorophyllide reductase 57 kD subunit - - - - - - - - - - - - PCP_red QTD2_k127_2198868_12 330214.NIDE0431 6.757e-178 565.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - Big_5,VCBS QTD2_k127_2198868_23 330214.NIDE0434 5.329e-116 382.0 COG1686@1|root,COG1686@2|Bacteria,3J179@40117|Nitrospirae 40117|Nitrospirae M Belongs to the peptidase S11 family - - 3.4.16.4 ko:K07258 ko00550,ko01100,map00550,map01100 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Peptidase_S11 QTD2_k127_2198868_29 330214.NIDE0436 8.517e-85 286.0 COG0583@1|root,COG0583@2|Bacteria,3J16P@40117|Nitrospirae 40117|Nitrospirae K Transcriptional regulator - - - ko:K11921,ko:K19338 - - - - ko00000,ko03000 - - - HTH_1,LysR_substrate QTD2_k127_2198868_45 330214.NIDE0436 1.474e-28 116.0 COG0583@1|root,COG0583@2|Bacteria,3J16P@40117|Nitrospirae 40117|Nitrospirae K Transcriptional regulator - - - ko:K11921,ko:K19338 - - - - ko00000,ko03000 - - - HTH_1,LysR_substrate QTD2_k127_2198868_36 330214.NIDE0437 6.346e-56 200.0 COG2346@1|root,COG2346@2|Bacteria 2|Bacteria O COG2346, Truncated hemoglobins glbN - - ko:K06886 - - - - ko00000 - - - Bac_globin QTD2_k127_2198868_6 330214.NIDE0440 6.806e-233 724.0 COG0334@1|root,COG0334@2|Bacteria 2|Bacteria E glutamate dehydrogenase [NAD(P)+] activity gdhA - 1.4.1.3,1.4.1.4 ko:K00261,ko:K00262 ko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964 M00740 R00243,R00248 RC00006,RC02799 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ELFV_dehydrog,ELFV_dehydrog_N QTD2_k127_2198868_34 330214.NIDE0441 1.379e-69 246.0 COG0321@1|root,COG0321@2|Bacteria 2|Bacteria H lipoyl(octanoyl) transferase activity lipB GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016053,GO:0016415,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0016874,GO:0016879,GO:0016979,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019752,GO:0032787,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048519,GO:0050789,GO:0051186,GO:0051188,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0072330,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.3.1.181,2.8.1.8 ko:K03644,ko:K03801 ko00785,ko01100,map00785,map01100 - R07766,R07767,R07768,R07769 RC00039,RC00992,RC01978,RC02867 ko00000,ko00001,ko01000 - - iECSF_1327.ECSF_0569,iSFV_1184.SFV_0696,iSFxv_1172.SFxv_0718 BPL_LplA_LipB QTD2_k127_2198868_26 330214.NIDE0442 1.293e-99 329.0 COG0265@1|root,COG0265@2|Bacteria 2|Bacteria O serine-type endopeptidase activity - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 QTD2_k127_2200732_5 330214.NIDE3044 2.13e-81 273.0 COG4775@1|root,COG4775@2|Bacteria,3J0AC@40117|Nitrospirae 40117|Nitrospirae M Surface antigen - - - ko:K07277 - - - - ko00000,ko02000,ko03029 1.B.33 - - Bac_surface_Ag,POTRA QTD2_k127_2200732_7 330214.NIDE3043 2.176e-62 222.0 COG2825@1|root,COG2825@2|Bacteria,3J1AH@40117|Nitrospirae 40117|Nitrospirae M Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K06142 - - - - ko00000 - - - OmpH QTD2_k127_2200732_8 330214.NIDE3042 9.276e-52 190.0 COG2825@1|root,COG2825@2|Bacteria,3J1AH@40117|Nitrospirae 40117|Nitrospirae M Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K06142 - - - - ko00000 - - - OmpH QTD2_k127_2200732_6 330214.NIDE3041 4.551e-78 264.0 COG0764@1|root,COG0764@2|Bacteria,3J0NG@40117|Nitrospirae 40117|Nitrospirae I Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs fabZ - 4.2.1.59 ko:K02372 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121 RC00831,RC01095 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FabA QTD2_k127_2200732_1 330214.NIDE3040 1.619e-143 458.0 COG1043@1|root,COG1043@2|Bacteria,3J0G6@40117|Nitrospirae 40117|Nitrospirae M Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxA - 2.3.1.129 ko:K00677 ko00540,ko01100,ko01503,map00540,map01100,map01503 M00060 R04567 RC00039,RC00055 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Acetyltransf_11,Hexapep QTD2_k127_2200732_2 330214.NIDE3039 6.73e-133 428.0 COG3494@1|root,COG3494@2|Bacteria,3J0KP@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF1009) - - - ko:K09949 - - - - ko00000 - - - DUF1009 QTD2_k127_2200732_3 330214.NIDE3038 4.726e-132 431.0 COG0673@1|root,COG0673@2|Bacteria,3J0M7@40117|Nitrospirae 40117|Nitrospirae S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA QTD2_k127_2200732_4 269799.Gmet_2350 4.99e-88 306.0 COG0763@1|root,COG0763@2|Bacteria,1MVBI@1224|Proteobacteria,42P35@68525|delta/epsilon subdivisions,2WJFA@28221|Deltaproteobacteria,43SZS@69541|Desulfuromonadales 28221|Deltaproteobacteria M Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxB GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 ko:K00748 ko00540,ko01100,map00540,map01100 M00060 R04606 RC00005,RC00059 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT19 - LpxB QTD2_k127_2200732_0 330214.NIDE3036 6.898e-222 697.0 COG1132@1|root,COG1132@2|Bacteria,3J0X8@40117|Nitrospirae 40117|Nitrospirae V Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - - ko:K06147,ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran QTD2_k127_2203091_1 330214.NIDE0497 1.76e-117 387.0 COG0574@1|root,COG3848@1|root,COG0574@2|Bacteria,COG3848@2|Bacteria,3J0QY@40117|Nitrospirae 40117|Nitrospirae G PEP-utilising enzyme, mobile domain - - 2.7.9.2 ko:K01007 ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200 M00173,M00374 R00199 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N QTD2_k127_2203091_0 330214.NIDE0498 4.098e-181 577.0 COG1322@1|root,COG1322@2|Bacteria,3J15T@40117|Nitrospirae 40117|Nitrospirae S RmuC family - - - ko:K09760 - - - - ko00000 - - - RmuC QTD2_k127_2203091_5 330214.NIDE0499 2.684e-53 190.0 COG4696@1|root,COG4696@2|Bacteria 2|Bacteria J Protein conserved in bacteria XK27_03185 - - ko:K16785 ko02010,map02010 M00582 - - ko00000,ko00001,ko00002,ko02000 3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35 - - Acetyltransf_3,Hydrolase_3,PRA-PH QTD2_k127_2203091_2 330214.NIDE0501 2.431e-107 358.0 COG0414@1|root,COG0414@2|Bacteria,3J0KR@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate panC GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 ko:K01918 ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110 M00119 R02473 RC00096,RC00141 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_ligase QTD2_k127_2203091_4 330214.NIDE0502 2.279e-75 256.0 COG0801@1|root,COG0801@2|Bacteria,3J19N@40117|Nitrospirae 40117|Nitrospirae H 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) folK - 2.7.6.3 ko:K00950 ko00790,ko01100,map00790,map01100 M00126,M00841 R03503 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HPPK QTD2_k127_2203091_3 330214.NIDE0503 7.683e-102 332.0 COG0436@1|root,COG0436@2|Bacteria,3J0G2@40117|Nitrospirae 40117|Nitrospirae E Aminotransferase class I and II - - 2.6.1.83 ko:K10206 ko00300,ko01100,ko01110,ko01130,ko01230,map00300,map01100,map01110,map01130,map01230 M00527 R07613 RC00006,RC01847 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 QTD2_k127_2220723_1 330214.NIDE0033 2.827e-145 469.0 COG0842@1|root,COG0842@2|Bacteria,3J0MP@40117|Nitrospirae 40117|Nitrospirae V ABC-2 family transporter protein - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_3 QTD2_k127_2220723_0 330214.NIDE0032 1.298e-294 916.0 COG1131@1|root,COG1131@2|Bacteria 2|Bacteria V ATPase activity - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran QTD2_k127_2220723_2 330214.NIDE0031 3.679e-127 413.0 COG1566@1|root,COG1566@2|Bacteria,3J0TB@40117|Nitrospirae 40117|Nitrospirae V HlyD family secretion protein - - - ko:K01993 - - - - ko00000 - - - HlyD_D23 QTD2_k127_2221762_0 330214.NIDE3591 2.741e-175 564.0 COG0744@1|root,COG0744@2|Bacteria,3J1FP@40117|Nitrospirae 40117|Nitrospirae M Transglycosylase - - 2.4.1.129,3.4.16.4 ko:K05365,ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - R04519 RC00005,RC00049 ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly,Transpeptidase QTD2_k127_2221762_1 1278073.MYSTI_05095 2.93e-19 92.0 COG0745@1|root,COG0745@2|Bacteria,1RKDZ@1224|Proteobacteria,42SJ2@68525|delta/epsilon subdivisions,2WPC9@28221|Deltaproteobacteria,2Z0YX@29|Myxococcales 28221|Deltaproteobacteria T cheY-homologous receiver domain - - - ko:K07773 ko02020,ko02026,map02020,map02026 M00456 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg QTD2_k127_2224555_0 330214.NIDE3482 9.927e-112 362.0 COG4447@1|root,COG4447@2|Bacteria 2|Bacteria S cellulose binding - - - - - - - - - - - - BNR QTD2_k127_2224555_2 706587.Desti_3215 2.45e-64 225.0 COG3865@1|root,COG3865@2|Bacteria,1N7IY@1224|Proteobacteria,42QW0@68525|delta/epsilon subdivisions,2WMZW@28221|Deltaproteobacteria 28221|Deltaproteobacteria S 3-demethylubiquinone-9 3-methyltransferase - - - - - - - - - - - - 3-dmu-9_3-mt QTD2_k127_2224555_3 1116472.MGMO_35c00160 1.068e-46 171.0 COG3795@1|root,COG3795@2|Bacteria,1RK95@1224|Proteobacteria,1S6H7@1236|Gammaproteobacteria 1236|Gammaproteobacteria S YCII-related domain - - - - - - - - - - - - YCII QTD2_k127_2224555_1 1157708.KB907450_gene6454 1.409e-98 329.0 COG4312@1|root,COG4312@2|Bacteria,1NAXN@1224|Proteobacteria,2VK34@28216|Betaproteobacteria 28216|Betaproteobacteria S Bacterial protein of unknown function (DUF899) - - - - - - - - - - - - DUF899 QTD2_k127_2329299_1 344747.PM8797T_14941 1.509e-76 265.0 COG0477@1|root,COG0477@2|Bacteria 2|Bacteria EGP Major facilitator Superfamily - - - ko:K03762 - - - - ko00000,ko02000 2.A.1.6.4 - - MFS_1,Sugar_tr QTD2_k127_2329299_0 330214.NIDE3622 4.167e-223 708.0 COG0025@1|root,COG0025@2|Bacteria 2|Bacteria P sodium:proton antiporter activity - - - ko:K03316 - - - - ko00000 2.A.36 - - Na_H_Exchanger,zf-UBP QTD2_k127_2329299_3 1415755.JQLV01000001_gene2859 1.473e-46 174.0 29KDN@1|root,307AY@2|Bacteria,1RDUY@1224|Proteobacteria,1S4VX@1236|Gammaproteobacteria,1XJRG@135619|Oceanospirillales 135619|Oceanospirillales - - - - - - - - - - - - - - - QTD2_k127_2329299_2 330214.NIDE4175 5.578e-64 230.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - FGE-sulfatase QTD2_k127_2352481_3 330214.NIDE0832 5.666e-46 169.0 COG2453@1|root,COG2453@2|Bacteria 2|Bacteria T phosphatase - - - - - - - - - - - - DSPc QTD2_k127_2352481_0 330214.NIDE0833 5.923e-109 359.0 COG0266@1|root,COG0266@2|Bacteria,3J17X@40117|Nitrospirae 40117|Nitrospirae L Formamidopyrimidine-DNA glycosylase H2TH domain - - 3.2.2.23,4.2.99.18 ko:K10563 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Fapy_DNA_glyco,H2TH,zf-FPG_IleRS QTD2_k127_2352481_1 330214.NIDE0834 7.034e-108 351.0 COG0045@1|root,COG0045@2|Bacteria,3J185@40117|Nitrospirae 40117|Nitrospirae H ATP citrate lyase citrate-binding - - 2.3.3.8 ko:K15231 ko00020,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00720,map01100,map01110,map01120,map01130,map01200 M00173 R00352 RC00004,RC00067 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp_2,Citrate_bind QTD2_k127_2428828_2 330214.NIDE2649 6.095e-161 526.0 COG2206@1|root,COG2206@2|Bacteria 2|Bacteria T PFAM metal-dependent phosphohydrolase, HD sub domain - - - - - - - - - - - - DUF3391,HD_5 QTD2_k127_2428828_6 330214.NIDE2650 6.424e-58 214.0 COG2206@1|root,COG2206@2|Bacteria 2|Bacteria T PFAM metal-dependent phosphohydrolase, HD sub domain cnpD3 - 3.6.1.11,3.6.1.40 ko:K01524 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000 - - - HD,HD_5 QTD2_k127_2428828_4 330214.NIDE2651 2.418e-79 282.0 COG0784@1|root,COG1196@1|root,COG0784@2|Bacteria,COG1196@2|Bacteria 2|Bacteria D nuclear chromosome segregation asgA - - ko:K02666,ko:K03497,ko:K19622 ko02020,map02020 - - - ko00000,ko00001,ko02022,ko02035,ko02044,ko03000,ko03036,ko04812 3.A.15.2 - - HATPase_c,HATPase_c_2,HisKA,HisKA_2,HisKA_3,Response_reg QTD2_k127_2428828_8 330214.NIDE2652 3.833e-33 134.0 COG0835@1|root,COG0835@2|Bacteria 2|Bacteria NT chemotaxis cheW - - ko:K02659,ko:K03408,ko:K03415,ko:K11524 ko02020,ko02025,ko02030,map02020,map02025,map02030 M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035,ko02044 - - - CheW QTD2_k127_2428828_0 330214.NIDE2654 0.0 1315.0 COG0643@1|root,COG0745@1|root,COG2198@1|root,COG0643@2|Bacteria,COG0745@2|Bacteria,COG2198@2|Bacteria,3J0WW@40117|Nitrospirae 40117|Nitrospirae T Two component signalling adaptor domain - - - ko:K02487,ko:K06596 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko01001,ko02022,ko02035 - - - CheW,HATPase_c,Hpt,Response_reg QTD2_k127_2428828_1 330214.NIDE2655 1.17e-281 878.0 COG0840@1|root,COG2972@1|root,COG0840@2|Bacteria,COG2972@2|Bacteria,3J11V@40117|Nitrospirae 40117|Nitrospirae T Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - ko:K02660 ko02020,ko02025,map02020,map02025 - - - ko00000,ko00001,ko02035,ko02044 - - - HAMP,MCPsignal QTD2_k127_2428828_7 330214.NIDE2656 5.414e-44 166.0 COG0835@1|root,COG0835@2|Bacteria 2|Bacteria NT chemotaxis cheW2 - - ko:K03408,ko:K03415 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - CheW QTD2_k127_2428828_5 330214.NIDE2657 4.506e-62 216.0 COG0745@1|root,COG0745@2|Bacteria,3J16K@40117|Nitrospirae 40117|Nitrospirae T cheY-homologous receiver domain - - - ko:K02658 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko02022,ko02035,ko02044 - - - Response_reg QTD2_k127_2428828_3 330214.NIDE2658 1.05e-96 321.0 COG3267@1|root,COG3267@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF3365 QTD2_k127_2429444_4 742766.HMPREF9455_00781 2.213e-09 61.0 COG0607@1|root,31225@2|Bacteria,4PGX1@976|Bacteroidetes,2FW1F@200643|Bacteroidia 976|Bacteroidetes P Protein of unknown function (DUF2892) - - - - - - - - - - - - DUF2892 QTD2_k127_2429444_1 1121385.AQXW01000004_gene2542 4.459e-56 199.0 COG1764@1|root,COG1764@2|Bacteria,2IHT2@201174|Actinobacteria 201174|Actinobacteria O PFAM OsmC family protein - - - - - - - - - - - - Methyltransf_11,OsmC QTD2_k127_2429444_0 330214.NIDE2587 2.486e-161 519.0 COG1643@1|root,COG1643@2|Bacteria 2|Bacteria L helicase activity hrpB - 3.6.4.13 ko:K03579 - - - - ko00000,ko01000 - - - DEAD,HA2,Helicase_C,HrpB_C QTD2_k127_2439380_5 330214.NIDE2480 5.407e-66 227.0 COG1398@1|root,COG1398@2|Bacteria 2|Bacteria I oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water desC - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase QTD2_k127_2439380_4 330214.NIDE2481 3.383e-132 427.0 COG0489@1|root,COG0489@2|Bacteria,3J0Z6@40117|Nitrospirae 40117|Nitrospirae D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP - - - ko:K03593 - - - - ko00000,ko03029,ko03036 - - - ParA QTD2_k127_2439380_6 330214.NIDE2482 1.573e-45 169.0 COG2146@1|root,COG2146@2|Bacteria,3J1E7@40117|Nitrospirae 40117|Nitrospirae P Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - 1.7.1.15 ko:K00363,ko:K05710 ko00360,ko00910,ko01120,ko01220,map00360,map00910,map01120,map01220 M00530,M00545 R00787,R06782,R06783 RC00098,RC00176 br01602,ko00000,ko00001,ko00002,ko01000 - - - Rieske QTD2_k127_2439380_2 330214.NIDE3953 2.955e-175 553.0 COG1071@1|root,COG1071@2|Bacteria 2|Bacteria C oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor pdhA - 1.2.4.1,1.2.4.4 ko:K00161,ko:K11381 ko00010,ko00020,ko00280,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00280,map00620,map00640,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00036,M00307 R00014,R00209,R01699,R03270,R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00004,RC00027,RC00627,RC02742,RC02743,RC02744,RC02882,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh QTD2_k127_2439380_1 330214.NIDE3952 2.507e-184 579.0 COG0022@1|root,COG0022@2|Bacteria 2|Bacteria C oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor pdhB - 1.2.4.1 ko:K00162,ko:K21417 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00307 R00014,R00209,R01699,R03270 RC00004,RC00027,RC00627,RC02742,RC02744,RC02882 br01601,ko00000,ko00001,ko00002,ko01000 - - iAF987.Gmet_2753 Biotin_lipoyl,Transket_pyr,Transketolase_C QTD2_k127_2439380_0 330214.NIDE3951 6.907e-185 585.0 COG0508@1|root,COG0508@2|Bacteria 2|Bacteria C S-acyltransferase activity pdhC - 1.2.4.1,2.3.1.12 ko:K00162,ko:K00627 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00307 R00014,R00209,R01699,R02569,R03270 RC00004,RC00027,RC00627,RC02742,RC02744,RC02857,RC02882 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding QTD2_k127_2439380_3 330214.NIDE3950 7.656e-163 520.0 COG0320@1|root,COG0320@2|Bacteria,3J0IY@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives lipA - 2.8.1.8 ko:K03644 ko00785,ko01100,map00785,map01100 - R07767,R07768 RC01978 ko00000,ko00001,ko01000 - - - Radical_SAM QTD2_k127_2441246_1 640081.Dsui_1455 3.826e-73 249.0 COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2VHQ1@28216|Betaproteobacteria,2KURM@206389|Rhodocyclales 206389|Rhodocyclales NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - - - - - - - - - - GAF,T2SSE,T2SSE_N QTD2_k127_2441246_0 1000565.METUNv1_02457 3.026e-235 739.0 COG2206@1|root,COG3437@1|root,COG2206@2|Bacteria,COG3437@2|Bacteria,1MV37@1224|Proteobacteria,2VJ21@28216|Betaproteobacteria,2KVJ8@206389|Rhodocyclales 206389|Rhodocyclales T Domain present in phytochromes and cGMP-specific phosphodiesterases. - - 3.1.4.17 ko:K01120 ko00230,map00230 - R00191,R01234 RC00296 ko00000,ko00001,ko01000 - - - FHA,GAF,HD,HD_5 QTD2_k127_2441246_2 395495.Lcho_0488 1.107e-09 65.0 2911D@1|root,2ZNNZ@2|Bacteria,1P8DV@1224|Proteobacteria,2W5MI@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_2441246_3 596153.Alide_4260 2.443e-05 47.0 COG4969@1|root,COG4969@2|Bacteria,1N7EQ@1224|Proteobacteria,2VVSJ@28216|Betaproteobacteria,4AFIZ@80864|Comamonadaceae 28216|Betaproteobacteria NU Belongs to the N-Me-Phe pilin family pilA - - ko:K02650 ko02020,map02020 - - - ko00000,ko00001,ko02035,ko02044 3.A.15.2 - - N_methyl,Pilin QTD2_k127_2466430_3 330214.NIDE3358 6.199e-47 173.0 COG1729@1|root,COG4372@1|root,COG1729@2|Bacteria,COG4372@2|Bacteria 2|Bacteria Q Transposase - - - ko:K01991,ko:K02557,ko:K07161,ko:K07484 ko02026,ko02030,ko02040,map02026,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1,1.B.18 - - DDE_Tnp_IS66,DDE_Tnp_IS66_C,DUF3084,LZ_Tnp_IS66,TPR_6,zf-IS66 QTD2_k127_2466430_2 330214.NIDE3357 4.669e-90 303.0 COG1729@1|root,COG1729@2|Bacteria,3J0RE@40117|Nitrospirae 40117|Nitrospirae S Outer membrane lipoprotein - - - - - - - - - - - - TPR_6 QTD2_k127_2466430_0 330214.NIDE3356 4.995e-215 684.0 COG0323@1|root,COG0323@2|Bacteria,3J0GN@40117|Nitrospirae 40117|Nitrospirae L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C QTD2_k127_2466430_1 330214.NIDE3355 2.83e-91 307.0 COG0324@1|root,COG0324@2|Bacteria,3J0KS@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) miaA GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 ko:K00791 ko00908,ko01100,ko01110,map00908,map01100,map01110 - R01122 RC02820 ko00000,ko00001,ko01000,ko01006,ko03016 - - - IPPT QTD2_k127_2467977_0 278963.ATWD01000001_gene3144 2.383e-43 167.0 COG0811@1|root,COG0811@2|Bacteria,3Y2M4@57723|Acidobacteria,2JI9T@204432|Acidobacteriia 204432|Acidobacteriia U MotA TolQ ExbB proton channel - - - ko:K03561,ko:K03562 ko01120,map01120 - - - ko00000,ko02000 1.A.30.2.1,1.A.30.2.2 - - MotA_ExbB QTD2_k127_2467977_1 1123227.KB899343_gene2036 2.803e-18 91.0 COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,2UA46@28211|Alphaproteobacteria,2JSUT@204441|Rhodospirillales 204441|Rhodospirillales U Biopolymer transport protein tolR - - ko:K03560 - - - - ko00000,ko02000 1.A.30.2.2 - - ExbD QTD2_k127_2467977_3 1121396.KB893092_gene3363 1.09e-07 61.0 COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,42U00@68525|delta/epsilon subdivisions,2WQD4@28221|Deltaproteobacteria,2MKKC@213118|Desulfobacterales 28221|Deltaproteobacteria U PFAM Biopolymer transport protein ExbD TolR tolR - - ko:K03560 - - - - ko00000,ko02000 1.A.30.2.2 - - ExbD QTD2_k127_2467977_2 1123242.JH636435_gene2202 1.075e-12 70.0 COG1028@1|root,COG3321@1|root,COG1028@2|Bacteria,COG3321@2|Bacteria,2IY7E@203682|Planctomycetes 203682|Planctomycetes IQ Beta-ketoacyl synthase - - - - - - - - - - - - Acyl_transf_1,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,ketoacyl-synt QTD2_k127_2469410_2 330214.NIDE0810 2.35e-154 488.0 COG0190@1|root,COG0190@2|Bacteria,3J0FT@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate folD GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 ko:K01491 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R01220,R01655 RC00202,RC00578 ko00000,ko00001,ko00002,ko01000 - - - THF_DHG_CYH,THF_DHG_CYH_C QTD2_k127_2469410_1 330214.NIDE0811 2.133e-165 523.0 COG0685@1|root,COG0685@2|Bacteria,3J0I8@40117|Nitrospirae 40117|Nitrospirae C Methylenetetrahydrofolate reductase - - - - - - - - - - - - MTHFR QTD2_k127_2469410_4 330214.NIDE0812 3.095e-132 427.0 COG0413@1|root,COG0413@2|Bacteria,3J0GX@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate panB - 2.1.2.11 ko:K00606 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R01226 RC00022,RC00200 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_transf QTD2_k127_2469410_5 330214.NIDE0814 4.47e-95 319.0 COG0639@1|root,COG0639@2|Bacteria 2|Bacteria T phosphoprotein phosphatase activity apaH GO:0003674,GO:0003824,GO:0004551,GO:0004721,GO:0006139,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0008796,GO:0008803,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0015949,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0034641,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0140096,GO:1901360,GO:1901564 3.6.1.41 ko:K01525 ko00230,map00230 - R00125 RC00002 ko00000,ko00001,ko01000 - - iECIAI39_1322.ECIAI39_0052,iEcSMS35_1347.EcSMS35_0053,iJN746.PP_0399,iSDY_1059.SDY_0074 Metallophos QTD2_k127_2469410_6 330214.NIDE0820 3.458e-68 233.0 COG0780@1|root,COG0780@2|Bacteria,3J0R4@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) queF - 1.7.1.13 ko:K09457 ko00790,ko01100,map00790,map01100 - R07605 RC01875 ko00000,ko00001,ko01000,ko03016 - - - QueF QTD2_k127_2469410_0 330214.NIDE0823 4.014e-190 595.0 COG1013@1|root,COG1013@2|Bacteria,3J10F@40117|Nitrospirae 2|Bacteria C Evidence 2a Function of homologous gene experimentally demonstrated in an other organism forB2 - 1.2.7.1 ko:K00170 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C QTD2_k127_2469410_3 330214.NIDE0824 2.442e-136 435.0 COG1014@1|root,COG1014@2|Bacteria,3J0YE@40117|Nitrospirae 40117|Nitrospirae C Pyruvate ferredoxin/flavodoxin oxidoreductase - - 1.2.7.1 ko:K00172 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - POR QTD2_k127_2493816_0 330214.NIDE3385 2.892e-172 545.0 COG0142@1|root,COG0142@2|Bacteria,3J0H0@40117|Nitrospirae 40117|Nitrospirae H Polyprenyl synthetase - - 2.5.1.90 ko:K02523 ko00900,ko01110,map00900,map01110 - R09248 RC00279 ko00000,ko00001,ko01000,ko01006 - - - polyprenyl_synt QTD2_k127_2493816_1 330214.NIDE3384 1.171e-157 500.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,3J0SV@40117|Nitrospirae 40117|Nitrospirae C Conserved region in glutamate synthase - - 1.4.1.13,1.4.1.14 ko:K00265 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase QTD2_k127_2494579_1 330214.NIDE1431 4.75e-140 450.0 COG2321@1|root,COG2321@2|Bacteria 2|Bacteria S Putative neutral zinc metallopeptidase ypfJ GO:0005575,GO:0005576 - ko:K07054 - - - - ko00000 - - - Zn_peptidase QTD2_k127_2494579_4 998674.ATTE01000001_gene2467 1.472e-07 59.0 COG2383@1|root,COG2383@2|Bacteria,1MZVW@1224|Proteobacteria,1SAW6@1236|Gammaproteobacteria 1236|Gammaproteobacteria S FUN14 family - - - - - - - - - - - - FUN14 QTD2_k127_2494579_0 330214.NIDE1429 1.72e-145 472.0 COG0265@1|root,COG0265@2|Bacteria 2|Bacteria O serine-type endopeptidase activity - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 QTD2_k127_2494579_2 330214.NIDE1428 2.594e-95 320.0 COG1119@1|root,COG1119@2|Bacteria 2|Bacteria P ATPase activity modF GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 3.6.3.21,3.6.3.34 ko:K02013,ko:K02028,ko:K05776 ko02010,map02010 M00189,M00236,M00240 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.14,3.A.1.3 - - ABC_tran QTD2_k127_2494579_3 330214.NIDE1426 6.816e-19 87.0 COG0082@1|root,COG0082@2|Bacteria,3J0KQ@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system aroC - 4.2.3.5 ko:K01736 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01714 RC00586 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_synt QTD2_k127_2505499_0 330214.NIDE4335 8.352e-143 458.0 COG0708@1|root,COG0708@2|Bacteria,3J13K@40117|Nitrospirae 40117|Nitrospirae L Endonuclease/Exonuclease/phosphatase family - - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos QTD2_k127_2505499_1 330214.NIDE3615 1.859e-122 400.0 COG2081@1|root,COG2081@2|Bacteria,3J12U@40117|Nitrospirae 40117|Nitrospirae S HI0933-like protein - - - ko:K07007 - - - - ko00000 - - - HI0933_like QTD2_k127_2509186_4 864702.OsccyDRAFT_4593 3.636e-51 188.0 COG0580@1|root,COG0580@2|Bacteria,1G3MJ@1117|Cyanobacteria,1H9H5@1150|Oscillatoriales 1117|Cyanobacteria G Major intrinsic protein - - - ko:K06188 - - - - ko00000,ko02000 1.A.8 - - MIP QTD2_k127_2509186_7 583345.Mmol_1964 2.408e-06 53.0 COG5660@1|root,COG5660@2|Bacteria,1NH4R@1224|Proteobacteria,2W81G@28216|Betaproteobacteria,2KNB0@206350|Nitrosomonadales 206350|Nitrosomonadales S Putative zinc-finger - - - - - - - - - - - - zf-HC2 QTD2_k127_2509186_2 886293.Sinac_5868 8.281e-115 380.0 COG3386@1|root,COG3386@2|Bacteria,2IXZT@203682|Planctomycetes 203682|Planctomycetes G gluconolactonase - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL QTD2_k127_2509186_0 861299.J421_1876 1.652e-209 666.0 COG3386@1|root,COG3386@2|Bacteria 2|Bacteria G gluconolactonase activity - - 3.1.1.17 ko:K01053 ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220 M00129 R01519,R02933,R03751 RC00537,RC00983 ko00000,ko00001,ko00002,ko01000,ko04147 - - - SGL QTD2_k127_2509186_3 861299.J421_1875 3.334e-83 286.0 COG0662@1|root,COG3193@1|root,COG0662@2|Bacteria,COG3193@2|Bacteria 2|Bacteria G Cupin 2, conserved barrel domain protein - - - ko:K11477 - - - - ko00000 - - - Cupin_2,Haem_degrading QTD2_k127_2509186_5 136993.KB900626_gene3353 3.531e-34 138.0 COG3193@1|root,COG3193@2|Bacteria,1RGUD@1224|Proteobacteria,2UGI0@28211|Alphaproteobacteria,371DY@31993|Methylocystaceae 28211|Alphaproteobacteria S Haem-degrading - - - - - - - - - - - - Haem_degrading QTD2_k127_2509186_1 330214.NIDE3743 4.558e-157 499.0 COG1132@1|root,COG1132@2|Bacteria,3J0X8@40117|Nitrospirae 40117|Nitrospirae V Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - - ko:K06147,ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran QTD2_k127_2522923_1 330214.NIDE2792 1.421e-175 553.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - 3.4.24.40 ko:K01406 ko01503,map01503 - - - ko00000,ko00001,ko01000,ko01002 - - - NHL QTD2_k127_2522923_2 330214.NIDE3359 3.438e-52 193.0 COG2885@1|root,COG2885@2|Bacteria,3J17Q@40117|Nitrospirae 2|Bacteria M Belongs to the ompA family pal - - ko:K03640 - - - - ko00000,ko02000 2.C.1.2 - - OmpA QTD2_k127_2522923_0 330214.NIDE2629 1.68e-321 997.0 COG0642@1|root,COG2205@2|Bacteria 330214.NIDE2629|- T PhoQ Sensor - - - - - - - - - - - - - QTD2_k127_2530035_3 234267.Acid_1718 3.655e-36 141.0 COG1183@1|root,COG1183@2|Bacteria,3Y3I7@57723|Acidobacteria 57723|Acidobacteria I Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - 2.7.8.8 ko:K17103 ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110 M00093 R01800 RC00002,RC00017,RC02795 ko00000,ko00001,ko00002,ko01000 - - - CDP-OH_P_transf QTD2_k127_2530035_4 330214.NIDE4122 1.165e-26 114.0 COG0249@1|root,COG0249@2|Bacteria,3J0CE@40117|Nitrospirae 40117|Nitrospirae L that it carries out the mismatch recognition step. This protein has a weak ATPase activity mutS GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03555 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V QTD2_k127_2530035_1 330214.NIDE4126 3.374e-81 275.0 COG0612@1|root,COG0612@2|Bacteria,3J0GS@40117|Nitrospirae 40117|Nitrospirae S Insulinase (Peptidase family M16) - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C QTD2_k127_2614188_8 330214.NIDE0773 2.716e-62 226.0 COG1680@1|root,COG1680@2|Bacteria,3J131@40117|Nitrospirae 40117|Nitrospirae V Beta-lactamase - - - - - - - - - - - - Beta-lactamase QTD2_k127_2614188_7 330214.NIDE0772 1.626e-62 219.0 COG3599@1|root,COG3599@2|Bacteria,3J19M@40117|Nitrospirae 40117|Nitrospirae D DivIVA protein - - - ko:K04074 - - - - ko00000,ko03036 - - - DivIVA QTD2_k127_2614188_10 330214.NIDE0771 9.979e-41 154.0 COG0762@1|root,COG0762@2|Bacteria,3J0U5@40117|Nitrospirae 40117|Nitrospirae S YGGT family - - - ko:K02221 - - - - ko00000,ko02044 - - - YGGT QTD2_k127_2614188_4 330214.NIDE0770 8.344e-99 331.0 COG0345@1|root,COG0345@2|Bacteria,3J0N8@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline proC - 1.5.1.2 ko:K00286 ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230 M00015 R01248,R01251,R03291,R03293 RC00054,RC00083 ko00000,ko00001,ko00002,ko01000 - - - F420_oxidored,P5CR_dimer QTD2_k127_2614188_6 330214.NIDE0769 5.028e-73 252.0 COG0325@1|root,COG0325@2|Bacteria,3J0RJ@40117|Nitrospirae 40117|Nitrospirae S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis - - - ko:K06997 - - - - ko00000 - - - Ala_racemase_N QTD2_k127_2614188_5 330214.NIDE0768 7.948e-82 280.0 COG1496@1|root,COG1496@2|Bacteria,3J0TC@40117|Nitrospirae 40117|Nitrospirae S Belongs to the multicopper oxidase YfiH RL5 family - - - ko:K05810 - - - - ko00000,ko01000 - - - Cu-oxidase_4 QTD2_k127_2614188_1 330214.NIDE0767 7.694e-201 632.0 COG0206@1|root,COG0206@2|Bacteria,3J0D4@40117|Nitrospirae 40117|Nitrospirae D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity ftsZ - - ko:K03531 ko04112,map04112 - - - ko00000,ko00001,ko02048,ko03036,ko04812 - - - FtsZ_C,Tubulin QTD2_k127_2614188_0 330214.NIDE0766 1.558e-228 712.0 COG0849@1|root,COG0849@2|Bacteria,3J0Q3@40117|Nitrospirae 40117|Nitrospirae D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring ftsA - - ko:K03590 ko04112,map04112 - - - ko00000,ko00001,ko03036,ko04812 - - - FtsA,SHS2_FTSA QTD2_k127_2614188_9 330214.NIDE0765 1.438e-52 197.0 COG1589@1|root,COG1589@2|Bacteria 2|Bacteria D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly ftsQ GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0031224,GO:0031226,GO:0032153,GO:0032505,GO:0032506,GO:0040007,GO:0042802,GO:0043093,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047 6.3.2.4 ko:K01921,ko:K03589,ko:K06438 ko00473,ko00550,ko01100,ko01502,ko04112,map00473,map00550,map01100,map01502,map04112 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011,ko03036 - - - FtsQ,POTRA_1 QTD2_k127_2614188_2 330214.NIDE0764 1.559e-147 473.0 COG1181@1|root,COG1181@2|Bacteria,3J0JM@40117|Nitrospirae 40117|Nitrospirae F Cell wall formation ddl - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N QTD2_k127_2614188_3 330214.NIDE0763 1.231e-137 445.0 COG0812@1|root,COG0812@2|Bacteria,3J0Q1@40117|Nitrospirae 40117|Nitrospirae M Cell wall formation murB - 1.3.1.98 ko:K00075 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R03191,R03192 RC02639 ko00000,ko00001,ko01000,ko01011 - - - FAD_binding_4,MurB_C QTD2_k127_2614188_11 330214.NIDE0762 5.215e-07 51.0 COG0773@1|root,COG0773@2|Bacteria,3J0D5@40117|Nitrospirae 40117|Nitrospirae M Belongs to the MurCDEF family murC - 6.3.2.8 ko:K01924 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R03193 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M QTD2_k127_2725545_2 330214.NIDE3047 0.0001147 45.0 COG0611@1|root,COG0611@2|Bacteria,3J0TF@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 thiL - 2.7.4.16 ko:K00946 ko00730,ko01100,map00730,map01100 M00127 R00617 RC00002 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C QTD2_k127_2725545_1 330214.NIDE3048 4.971e-56 202.0 COG3216@1|root,COG3216@2|Bacteria,3J1DC@40117|Nitrospirae 40117|Nitrospirae S Uncharacterized protein conserved in bacteria (DUF2062) - - - ko:K09928 - - - - ko00000 - - - DUF2062 QTD2_k127_2725545_0 330214.NIDE3049 7.346e-274 846.0 COG1078@1|root,COG1078@2|Bacteria,3J0YB@40117|Nitrospirae 40117|Nitrospirae S Metal dependent phosphohydrolases with conserved 'HD' motif. - - - ko:K06885 - - - - ko00000 - - - HD QTD2_k127_2727384_3 330214.NIDE1225 8.736e-90 301.0 COG0299@1|root,COG0299@2|Bacteria,3J0MC@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate purN - 2.1.2.2 ko:K11175 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - Formyl_trans_N QTD2_k127_2727384_1 330214.NIDE1224 7.468e-162 515.0 COG0150@1|root,COG0150@2|Bacteria,3J0DR@40117|Nitrospirae 40117|Nitrospirae F AIR synthase related protein, N-terminal domain purM - 6.3.3.1 ko:K01933 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04208 RC01100 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C QTD2_k127_2727384_0 330214.NIDE1223 8.555e-246 765.0 COG2204@1|root,COG2204@2|Bacteria,3J0C2@40117|Nitrospirae 40117|Nitrospirae T Bacterial regulatory protein, Fis family - - - ko:K13599 ko02020,map02020 M00498 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_2727384_2 330214.NIDE1222 1.96e-109 357.0 COG5000@1|root,COG5000@2|Bacteria,3J0B7@40117|Nitrospirae 40117|Nitrospirae T GHKL domain - - 2.7.13.3 ko:K13598 ko02020,map02020 M00498 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,PAS QTD2_k127_2728129_0 404589.Anae109_0556 7.138e-74 266.0 COG4783@1|root,COG4783@2|Bacteria,1RAJB@1224|Proteobacteria 1224|Proteobacteria S peptidase m48, ste24p - - - - - - - - - - - - Peptidase_M48 QTD2_k127_2728129_1 1384056.N787_12870 1.313e-10 72.0 2EDW0@1|root,32VXH@2|Bacteria,1R3JT@1224|Proteobacteria,1SIFF@1236|Gammaproteobacteria,1X6NA@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - QTD2_k127_2728129_2 1232410.KI421428_gene1088 1.288e-05 48.0 COG0449@1|root,COG0449@2|Bacteria,1RGWX@1224|Proteobacteria,42TA9@68525|delta/epsilon subdivisions,2WPHJ@28221|Deltaproteobacteria 28221|Deltaproteobacteria M ORF6N domain - - - - - - - - - - - - ORF6N QTD2_k127_2731946_6 338966.Ppro_3009 1.601e-25 125.0 COG2202@1|root,COG3920@1|root,COG5002@1|root,COG2202@2|Bacteria,COG3920@2|Bacteria,COG5002@2|Bacteria,1MVPJ@1224|Proteobacteria,42SMY@68525|delta/epsilon subdivisions,2WPKE@28221|Deltaproteobacteria 28221|Deltaproteobacteria T ATP-binding region ATPase domain protein - - - - - - - - - - - - HATPase_c,HisKA_2,PAS,PAS_3 QTD2_k127_2731946_2 395494.Galf_1970 2.961e-68 265.0 COG2202@1|root,COG3829@1|root,COG5001@1|root,COG2202@2|Bacteria,COG3829@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2VH3V@28216|Betaproteobacteria,44WC2@713636|Nitrosomonadales 28216|Betaproteobacteria T Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - - - - - - - - - - EAL,GGDEF,MHYT,PAS_9,dCache_2 QTD2_k127_2731946_4 330214.NIDE0586 8.14e-54 201.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - - - - - - - - - - GerE,Response_reg QTD2_k127_2731946_0 330214.NIDE1491 2.437e-90 337.0 COG0745@1|root,COG2202@1|root,COG3829@1|root,COG4585@1|root,COG5002@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG3829@2|Bacteria,COG4585@2|Bacteria,COG5002@2|Bacteria,3J12P@40117|Nitrospirae 40117|Nitrospirae T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - ABC_sub_bind,HATPase_c,HisKA_3,PAS_9 QTD2_k127_2731946_3 1288494.EBAPG3_6810 1.789e-63 224.0 COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,2VQ9H@28216|Betaproteobacteria,372YZ@32003|Nitrosomonadales 28216|Betaproteobacteria K helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg QTD2_k127_2731946_1 330214.NIDE0583 1.578e-82 277.0 COG2862@1|root,COG2862@2|Bacteria 2|Bacteria S Uncharacterized protein family, UPF0114 yqhA GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K03535 - - - - ko00000,ko02000 2.A.1.14.1 - - UPF0114 QTD2_k127_2731946_5 671143.DAMO_1302 2.555e-46 179.0 2EMCJ@1|root,33F1H@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_2737091_0 330214.NIDE0551 4.601e-235 739.0 COG0457@1|root,COG4995@1|root,COG0457@2|Bacteria,COG4995@2|Bacteria 2|Bacteria S CHAT domain - - - - - - - - - - - - CHAT,TPR_10,TPR_12,TPR_16,TPR_7,TPR_8 QTD2_k127_2737091_1 330214.NIDE0550 5.432e-57 207.0 COG3087@1|root,COG3087@2|Bacteria 2|Bacteria D Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides - - - - - - - - - - - - DUF928,NYN QTD2_k127_274058_2 330214.NIDE4295 4.223e-35 140.0 COG1525@1|root,COG1525@2|Bacteria 2|Bacteria L nuclease - - - - - - - - - - - - Excalibur,SNase QTD2_k127_274058_1 330214.NIDE4308 5.932e-48 176.0 COG0824@1|root,COG0824@2|Bacteria,3J1EV@40117|Nitrospirae 40117|Nitrospirae S Thioesterase-like superfamily - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT QTD2_k127_274058_0 330214.NIDE4310 7.683e-176 557.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE4310|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_2741339_4 391612.CY0110_11832 1.338e-71 255.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase yrrT GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464 4.4.1.21 ko:K07173,ko:K17462 ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111 M00609 R01291,R10404 RC00003,RC00069,RC01929 ko00000,ko00001,ko00002,ko01000 - - - MerR_1,Methyltransf_11,Methyltransf_23,Methyltransf_25 QTD2_k127_2741339_6 316067.Geob_1475 1.781e-35 150.0 COG4641@1|root,COG4641@2|Bacteria 2|Bacteria M Protein conserved in bacteria - - - ko:K06320 - - - - ko00000 - - - DUF3880,Glyco_trans_1_2 QTD2_k127_2741339_2 330214.NIDE3434 2.711e-89 301.0 COG1277@1|root,COG1277@2|Bacteria 2|Bacteria - - pilI - - - - - - - - - - - ABC2_membrane_2 QTD2_k127_2741339_1 330214.NIDE3435 2.32e-134 436.0 COG1131@1|root,COG1131@2|Bacteria,3J122@40117|Nitrospirae 40117|Nitrospirae V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran QTD2_k127_2741339_3 330214.NIDE3436 1.916e-80 278.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE3436|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_2741339_0 330214.NIDE3437 9.772e-140 469.0 COG0457@1|root,COG3307@1|root,COG0457@2|Bacteria,COG3307@2|Bacteria 2|Bacteria M -O-antigen - GO:0003674,GO:0003824,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016740,GO:0016757,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - ko:K02847,ko:K13009,ko:K16705 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01005,ko02000 9.B.67.4,9.B.67.5 - - PglL_A,Wzy_C,Wzy_C_2 QTD2_k127_2741339_5 330214.NIDE3438 2.936e-42 162.0 COG4968@1|root,COG4968@2|Bacteria 2|Bacteria NU Prokaryotic N-terminal methylation motif pilA GO:0005575,GO:0005623,GO:0009289,GO:0042995,GO:0044464 - ko:K02650 ko02020,map02020 - - - ko00000,ko00001,ko02035,ko02044 3.A.15.2 - - N_methyl,Pilin_PilA QTD2_k127_2741956_2 330214.NIDE0302 4.989e-162 515.0 COG0621@1|root,COG0621@2|Bacteria,3J0CD@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,TRAM,UPF0004 QTD2_k127_2741956_4 330214.NIDE0301 2.281e-94 311.0 COG0663@1|root,COG0663@2|Bacteria,3J121@40117|Nitrospirae 40117|Nitrospirae S Bacterial transferase hexapeptide (six repeats) - - - - - - - - - - - - Hexapep QTD2_k127_2741956_6 404380.Gbem_3219 5.212e-60 218.0 COG2234@1|root,COG2234@2|Bacteria,1MXJC@1224|Proteobacteria,42RKA@68525|delta/epsilon subdivisions,2X60E@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Peptidase family M28 - - - - - - - - - - - - Peptidase_M28 QTD2_k127_2741956_1 330214.NIDE0299 1.522e-167 529.0 COG0548@1|root,COG0548@2|Bacteria,3J0H3@40117|Nitrospirae 40117|Nitrospirae E Belongs to the acetylglutamate kinase family. ArgB subfamily argB - 2.7.2.8 ko:K00930 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R02649 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase QTD2_k127_2741956_7 645991.Sgly_2273 6.75e-60 224.0 COG4974@1|root,COG4974@2|Bacteria,1TPQB@1239|Firmicutes,25C3N@186801|Clostridia,260TU@186807|Peptococcaceae 186801|Clostridia D Belongs to the 'phage' integrase family. XerC subfamily xerC - - ko:K03733,ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase QTD2_k127_2741956_0 330214.NIDE0295 4.691e-230 718.0 COG1206@1|root,COG1206@2|Bacteria,3J0WT@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs trmFO - 2.1.1.74 ko:K04094 - - - - ko00000,ko01000,ko03016,ko03036 - - - GIDA QTD2_k127_2741956_3 330214.NIDE0282 1.716e-105 351.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE0282|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_2746639_0 330214.NIDE0516 1.498e-125 406.0 COG4447@1|root,COG4447@2|Bacteria 2|Bacteria S cellulose binding hcf136 - - - - - - - - - - - BNR,Sortilin-Vps10 QTD2_k127_2761297_16 330214.NIDE3564 2.211e-43 168.0 COG4548@1|root,COG4548@2|Bacteria 2|Bacteria P von Willebrand factor (vWF) type A domain - - - ko:K02448 - - R00294 RC02794 ko00000 3.D.4.10 - - VWA,VWA_2 QTD2_k127_2761297_11 330214.NIDE3565 9.323e-75 253.0 COG4802@1|root,COG4802@2|Bacteria 2|Bacteria C ferredoxin-thioredoxin reductase activity ftrC GO:0003674,GO:0003824,GO:0005488,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015979,GO:0016491,GO:0016730,GO:0022900,GO:0030385,GO:0044237,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114 1.8.7.2 ko:K17892 - - - - ko00000,ko01000 - - - FeThRed_B QTD2_k127_2761297_17 335283.Neut_1378 9.551e-41 154.0 2C8BN@1|root,32RKS@2|Bacteria,1N56Z@1224|Proteobacteria,2W56V@28216|Betaproteobacteria,373EQ@32003|Nitrosomonadales 28216|Betaproteobacteria S Glycine-zipper domain - - - - - - - - - - - - Gly-zipper_OmpA QTD2_k127_2761297_21 330214.NIDE3568 1.205e-27 115.0 COG1872@1|root,COG1872@2|Bacteria 2|Bacteria I DUF167 yggU - - ko:K09131 - - - - ko00000 - - - DUF167 QTD2_k127_2761297_5 330214.NIDE3569 4.384e-144 464.0 COG0714@1|root,COG0714@2|Bacteria 2|Bacteria KLT Associated with various cellular activities norQ - - ko:K04748 - - R00294 RC02794 ko00000 3.D.4.10 - - AAA_5,CbbQ_C QTD2_k127_2761297_0 330214.NIDE3570 0.0 1287.0 COG2203@1|root,COG3437@1|root,COG4191@1|root,COG2203@2|Bacteria,COG3437@2|Bacteria,COG4191@2|Bacteria,3J10H@40117|Nitrospirae 40117|Nitrospirae T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_9,Response_reg QTD2_k127_2761297_4 330214.NIDE3571 1.239e-150 491.0 COG0727@1|root,COG4866@1|root,COG0727@2|Bacteria,COG4866@2|Bacteria 2|Bacteria S Uncharacterised conserved protein (DUF2156) - - - ko:K01163,ko:K06940 - - - - ko00000 - - - Acetyltransf_9,CxxCxxCC,DUF2156 QTD2_k127_2761297_20 330214.NIDE3753 8.253e-30 134.0 COG0745@1|root,COG4191@1|root,COG0745@2|Bacteria,COG4191@2|Bacteria,3J10H@40117|Nitrospirae 40117|Nitrospirae T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_9,Response_reg QTD2_k127_2761297_19 713586.KB900536_gene1384 3.109e-31 138.0 COG2199@1|root,COG3221@1|root,COG3221@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,1SZ0G@1236|Gammaproteobacteria 1236|Gammaproteobacteria T diguanylate cyclase - - - - - - - - - - - - GGDEF QTD2_k127_2761297_3 330214.NIDE3572 1.039e-197 627.0 28MGX@1|root,2ZATZ@2|Bacteria,3J0YU@40117|Nitrospirae 40117|Nitrospirae - - - - - - - - - - - - - - - QTD2_k127_2761297_22 330214.NIDE3573 7.666e-27 113.0 COG0625@1|root,COG0625@2|Bacteria 2|Bacteria O glutathione transferase activity - - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C_2,GST_N_3 QTD2_k127_2761297_1 330214.NIDE3574 2.867e-217 678.0 COG1509@1|root,COG1509@2|Bacteria,3J0W3@40117|Nitrospirae 40117|Nitrospirae C Lysine-2,3-aminomutase - - 5.4.3.2 ko:K01843 ko00310,map00310 - R00461 RC00303 ko00000,ko00001,ko01000 - - - LAM_C,Radical_SAM QTD2_k127_2761297_2 330214.NIDE3575 4.786e-203 637.0 COG0717@1|root,COG0717@2|Bacteria,3J0WG@40117|Nitrospirae 40117|Nitrospirae F 2'-deoxycytidine 5'-triphosphate deaminase (DCD) - - 3.5.4.13 ko:K01494 ko00240,ko01100,map00240,map01100 M00053 R00568,R02325 RC00074 ko00000,ko00001,ko00002,ko01000 - - - DCD QTD2_k127_2761297_9 330214.NIDE3577 7.2e-89 299.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - 3.4.14.13 ko:K20742 - - - - ko00000,ko01000,ko01002 - - - Glycos_transf_2 QTD2_k127_2761297_8 330214.NIDE3579 9.234e-98 325.0 COG3222@1|root,COG3222@2|Bacteria 2|Bacteria S Uncharacterized protein conserved in bacteria (DUF2064) - - - ko:K09931 - - - - ko00000 - - - DUF2064 QTD2_k127_2761297_6 330214.NIDE3580 2.068e-126 409.0 COG1028@1|root,COG1028@2|Bacteria 330214.NIDE3580|- IQ oxidoreductase activity, acting on CH-OH group of donors - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - - QTD2_k127_2761297_13 330214.NIDE3582 3.087e-58 203.0 COG0278@1|root,COG0278@2|Bacteria 2|Bacteria O protein disulfide oxidoreductase activity grxD GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051536,GO:0051537,GO:0051540 - ko:K07390 - - - - ko00000,ko03029,ko03110 - - iPC815.YPO2383,iYL1228.KPN_01992 Glutaredoxin QTD2_k127_2761297_23 330214.NIDE3583 8.439e-24 103.0 COG0271@1|root,COG0271@2|Bacteria 2|Bacteria T Belongs to the BolA IbaG family bolA GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0019538,GO:0022603,GO:0022604,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051604,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097428,GO:0097659,GO:0106035,GO:1901360,GO:1901362,GO:1901564,GO:1901576 - ko:K05527,ko:K22066 - - - - ko00000,ko03000,ko03029 - - - BolA QTD2_k127_2761297_12 330214.NIDE3585 8.694e-73 250.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HATPase_c,HisKA,PAS,PIG-L,Response_reg QTD2_k127_2761297_7 330214.NIDE3586 7.077e-126 412.0 COG1086@1|root,COG4191@1|root,COG1086@2|Bacteria,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - 2.7.8.33,2.7.8.35 ko:K02851 - - R08856 RC00002 ko00000,ko01000,ko01003,ko01005 - - - Bac_transf,CoA_binding_3,Glycos_transf_4,HATPase_c,HisKA,LicD,PAS,PAS_9,Response_reg QTD2_k127_2761297_10 330214.NIDE3587 4.599e-87 294.0 COG3850@1|root,COG4191@1|root,COG3850@2|Bacteria,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - 2.7.13.3 ko:K07638 ko02020,ko02026,map02020,map02026 M00445,M00742,M00743 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - GAF_2,HAMP,HATPase_c,HisKA,PAS_9,PilJ,Response_reg,SpoIIE QTD2_k127_2796196_4 335543.Sfum_0326 2.748e-19 89.0 COG0790@1|root,COG0790@2|Bacteria,1PSBM@1224|Proteobacteria,42XTM@68525|delta/epsilon subdivisions,2WSIZ@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Sel1-like repeats. - - - ko:K07126 - - - - ko00000 - - - Sel1 QTD2_k127_2796196_1 243233.MCA0176 3.287e-214 677.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,1RQ6B@1236|Gammaproteobacteria,1XEVK@135618|Methylococcales 135618|Methylococcales MU Outer membrane efflux protein - - - - - - - - - - - - OEP QTD2_k127_2796196_2 243233.MCA0177 7.539e-151 497.0 COG0845@1|root,COG0845@2|Bacteria,1NQZ0@1224|Proteobacteria,1S3MR@1236|Gammaproteobacteria,1XEPB@135618|Methylococcales 135618|Methylococcales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - HlyD_D23 QTD2_k127_2796196_0 243233.MCA0178 6.858e-251 784.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RQ6V@1236|Gammaproteobacteria,1XDWC@135618|Methylococcales 135618|Methylococcales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran QTD2_k127_2796196_3 1134912.AJTV01000001_gene1417 8.537e-132 429.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,36ZH4@31993|Methylocystaceae 28211|Alphaproteobacteria V Phosphate acyltransferases - - - - - - - - - - - - ACR_tran QTD2_k127_2799370_4 330214.NIDE1222 7.57e-72 246.0 COG5000@1|root,COG5000@2|Bacteria,3J0B7@40117|Nitrospirae 40117|Nitrospirae T GHKL domain - - 2.7.13.3 ko:K13598 ko02020,map02020 M00498 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,PAS QTD2_k127_2799370_6 330214.NIDE1221 1.964e-39 151.0 2EAFJ@1|root,334IY@2|Bacteria 2|Bacteria S Domain of unknown function (DUF1844) - - - - - - - - - - - - DUF1844 QTD2_k127_2799370_1 330214.NIDE1220 1.462e-107 356.0 COG1694@1|root,COG3956@2|Bacteria,3J0Q7@40117|Nitrospirae 40117|Nitrospirae S MazG nucleotide pyrophosphohydrolase domain - - - ko:K02499 - - - - ko00000,ko03036 - - - MazG QTD2_k127_2799370_0 330214.NIDE1217 1.953e-208 657.0 COG1232@1|root,COG1232@2|Bacteria,3J0PQ@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX - - 1.3.3.15,1.3.3.4 ko:K00231 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03222,R04178 RC00885 ko00000,ko00001,ko00002,ko01000 - - - Amino_oxidase QTD2_k127_2799370_2 330214.NIDE1216 1.452e-83 280.0 COG0276@1|root,COG0276@2|Bacteria,3J0P9@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the ferrous insertion into protoporphyrin IX hemH - 4.99.1.1,4.99.1.9 ko:K01772 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R00310,R11329 RC01012 ko00000,ko00001,ko00002,ko01000 - - - Ferrochelatase QTD2_k127_2822604_10 330214.NIDE0948 1.151e-94 319.0 COG0457@1|root,COG0790@1|root,COG0457@2|Bacteria,COG0790@2|Bacteria,3J1CG@40117|Nitrospirae 2|Bacteria S Evidence 5 No homology to any previously reported sequences - - - ko:K02450,ko:K07126 - M00331 - - ko00000,ko00002,ko02044 9.B.42 - - Sel1 QTD2_k127_2822604_12 330214.NIDE0779 4.395e-68 261.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system pilR - - ko:K02667 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_2822604_4 765952.PUV_10080 1.309e-130 430.0 COG0475@1|root,COG0475@2|Bacteria 2|Bacteria P glutathione-regulated potassium exporter activity - - - - - - - - - - - - Na_H_Exchanger QTD2_k127_2822604_13 330214.NIDE0942 6.168e-68 243.0 COG2885@1|root,COG2885@2|Bacteria 2|Bacteria M chlorophyll binding - - - ko:K03640 - - - - ko00000,ko02000 2.C.1.2 - - OMP_b-brl,OmpA QTD2_k127_2822604_1 330214.NIDE0941 7.255e-247 781.0 COG2304@1|root,COG2304@2|Bacteria 2|Bacteria IU oxidoreductase activity - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VIT,VWA_3 QTD2_k127_2822604_14 330214.NIDE0940 2.913e-55 203.0 COG3764@1|root,COG3764@2|Bacteria 2|Bacteria M Sortase family srtA - 3.4.22.70 ko:K07284 - - - - ko00000,ko01000,ko01002,ko01011 - - - Sortase QTD2_k127_2822604_2 330214.NIDE0907 8.874e-166 544.0 COG4249@1|root,COG4249@2|Bacteria,3J0QX@40117|Nitrospirae 40117|Nitrospirae S Evidence 5 No homology to any previously reported sequences - - - ko:K07126 - - - - ko00000 - - - Peptidase_C14 QTD2_k127_2822604_11 330214.NIDE0906 3.231e-88 300.0 COG0382@1|root,COG0382@2|Bacteria,3J0TY@40117|Nitrospirae 40117|Nitrospirae H UbiA prenyltransferase family - - 2.5.1.39 ko:K03179 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R05000,R05615 RC00209,RC02895 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA QTD2_k127_2822604_3 330214.NIDE0905 6.556e-150 482.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - ko:K02305,ko:K07152 ko00910,ko01120,map00910,map01120 M00529 R00294 RC02794 ko00000,ko00001,ko00002,ko03029 3.D.4.10 - - Cytochrom_C,PA14,SCO1-SenC QTD2_k127_2822604_6 330214.NIDE0904 2.509e-117 383.0 2ERPD@1|root,33J8R@2|Bacteria 2|Bacteria S Ethylbenzene dehydrogenase - - - - - - - - - - - - EB_dh QTD2_k127_2822604_5 330214.NIDE0903 1.421e-124 404.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - - - - - - - - - - Cytochrome_CBB3 QTD2_k127_2822604_8 330214.NIDE0902 4.165e-100 329.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c soxD - - ko:K08738 ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00595 R10151 RC03151,RC03152 ko00000,ko00001,ko00002 3.D.4.6 - - Cytochrom_C,Cytochrome_CBB3 QTD2_k127_2822604_0 330214.NIDE0901 0.0 1052.0 COG1271@1|root,COG1271@2|Bacteria 2|Bacteria C aerobic electron transport chain - - 1.10.3.14 ko:K00425,ko:K08738 ko00190,ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00190,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00153,M00595 R10151,R11325 RC00061,RC03151,RC03152 ko00000,ko00001,ko00002,ko01000 3.D.4.3,3.D.4.6 - - Cyt_bd_oxida_I,Cytochrome_CBB3 QTD2_k127_2822604_7 330214.NIDE0899 1.064e-115 373.0 COG1290@1|root,COG1290@2|Bacteria,3J0Q6@40117|Nitrospirae 40117|Nitrospirae C Cytochrome b/b6/petB - - - ko:K00412 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko03029 - - - Cytochrom_B_C,Cytochrome_B QTD2_k127_2822847_4 330214.NIDE3548 6.336e-72 244.0 COG0104@1|root,COG0104@2|Bacteria,3J0FV@40117|Nitrospirae 40117|Nitrospirae F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt QTD2_k127_2822847_8 290397.Adeh_2032 8.016e-45 182.0 COG0457@1|root,COG0457@2|Bacteria 290397.Adeh_2032|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_2822847_0 404589.Anae109_1778 0.0 1125.0 COG1215@1|root,COG3405@1|root,COG1215@2|Bacteria,COG3405@2|Bacteria,1MWF8@1224|Proteobacteria,42TR0@68525|delta/epsilon subdivisions,2WQ94@28221|Deltaproteobacteria,2Z383@29|Myxococcales 28221|Deltaproteobacteria M Glycosyl hydrolases family 8 - - 2.4.1.12 ko:K00694 ko00500,ko01100,ko02026,map00500,map01100,map02026 - R02889 RC00005 ko00000,ko00001,ko01000,ko01003,ko02000 4.D.3.1.2,4.D.3.1.5,4.D.3.1.6 GT2 - Cellulose_synt,Glyco_hydro_8,Glyco_trans_2_3,Glycos_transf_2,PilZ QTD2_k127_2822847_5 1382356.JQMP01000001_gene1246 7.851e-48 180.0 COG1846@1|root,COG1846@2|Bacteria 2|Bacteria K DNA-binding transcription factor activity - - - - - - - - - - - - HTH_27,MarR_2 QTD2_k127_2822847_3 330214.NIDE3451 5.362e-144 462.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - FGE-sulfatase QTD2_k127_2822847_6 330214.NIDE3450 4.91e-47 178.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c ccoP - - ko:K00405 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrom_C,Cytochrome_CBB3,FixO QTD2_k127_2822847_1 330214.NIDE3449 6.332e-209 655.0 COG5008@1|root,COG5008@2|Bacteria 2|Bacteria NU twitching motility protein pilU - - ko:K02670 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE QTD2_k127_2822847_2 330214.NIDE3448 5.841e-195 610.0 COG2805@1|root,COG2805@2|Bacteria,3J0YS@40117|Nitrospirae 40117|Nitrospirae NU Type II/IV secretion system protein - - - ko:K02669 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE QTD2_k127_2838342_5 330214.NIDE1761 4.816e-18 87.0 2C8BN@1|root,32RKS@2|Bacteria 2|Bacteria S Glycine-zipper domain - - - - - - - - - - - - Gly-zipper_OmpA QTD2_k127_2838342_0 330214.NIDE1759 2.427e-284 882.0 COG0778@1|root,COG0778@2|Bacteria,3J0XZ@40117|Nitrospirae 40117|Nitrospirae C Nitroreductase - - - - - - - - - - - - - QTD2_k127_2838342_2 314345.SPV1_13092 8.353e-120 392.0 COG2837@1|root,COG2837@2|Bacteria,1MWDD@1224|Proteobacteria 1224|Proteobacteria P peroxidase dyp - - ko:K07223 - - - - ko00000 - - - Dyp_perox QTD2_k127_2838342_3 330214.NIDE1751 6.305e-107 351.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE1751|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_2838342_6 1121403.AUCV01000014_gene4623 2.193e-06 56.0 COG3637@1|root,COG3637@2|Bacteria,1NHDI@1224|Proteobacteria,42X8Q@68525|delta/epsilon subdivisions,2WTDT@28221|Deltaproteobacteria 28221|Deltaproteobacteria M Lipid A 3-O-deacylase (PagL) - - - - - - - - - - - - PagL QTD2_k127_2840615_5 661367.LLO_0446 8.227e-07 55.0 2AP90@1|root,31EAZ@2|Bacteria,1QBKM@1224|Proteobacteria,1T767@1236|Gammaproteobacteria,1JEY9@118969|Legionellales 118969|Legionellales - - - - - - - - - - - - - - - QTD2_k127_2840615_0 1121930.AQXG01000002_gene2373 1.397e-76 261.0 COG2818@1|root,COG2818@2|Bacteria,4NGRC@976|Bacteroidetes,1IQSX@117747|Sphingobacteriia 976|Bacteroidetes L DNA-3-methyladenine glycosylase tag - 3.2.2.20 ko:K01246 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Adenine_glyco QTD2_k127_2840615_3 717231.Flexsi_0904 3.138e-11 72.0 COG1047@1|root,COG1047@2|Bacteria,2GFY6@200930|Deferribacteres 200930|Deferribacteres O FKBP-type peptidyl-prolyl cis-trans isomerase - - 5.2.1.8 ko:K03774 - - - - ko00000,ko01000,ko03110 - - - FKBP_C QTD2_k127_2840615_1 1342301.JASD01000006_gene53 5.316e-51 187.0 2F1PW@1|root,33UQ6@2|Bacteria,1RHX8@1224|Proteobacteria,2UTKW@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_2841130_5 330214.NIDE0851 1.54e-76 258.0 COG0785@1|root,COG0785@2|Bacteria,3J0KU@40117|Nitrospirae 40117|Nitrospirae O Cytochrome C biogenesis protein transmembrane region ccdA - - ko:K06196 - - - - ko00000,ko02000 5.A.1.2 - - DsbD QTD2_k127_2841130_6 330214.NIDE0850 4.81e-62 219.0 COG0526@1|root,COG0526@2|Bacteria 2|Bacteria CO cell redox homeostasis - - - - - - - - - - - - AhpC-TSA,Redoxin QTD2_k127_2841130_4 330214.NIDE0849 4.696e-90 301.0 COG0526@1|root,COG0526@2|Bacteria,3J0SG@40117|Nitrospirae 40117|Nitrospirae CO Thioredoxin-like - - - - - - - - - - - - AhpC-TSA QTD2_k127_2841130_2 330214.NIDE0848 1.537e-189 593.0 COG0755@1|root,COG0755@2|Bacteria,3J0NY@40117|Nitrospirae 40117|Nitrospirae O Cytochrome C assembly protein - - - - - - - - - - - - Cytochrom_C_asm QTD2_k127_2841130_0 330214.NIDE0847 9.718e-260 805.0 COG1333@1|root,COG1333@2|Bacteria,3J0N7@40117|Nitrospirae 40117|Nitrospirae O ResB-like family - - - ko:K07399 - - - - ko00000 - - - ResB QTD2_k127_2841130_1 330214.NIDE0846 2.371e-232 722.0 COG0192@1|root,COG0192@2|Bacteria,3J0A4@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme metK - 2.5.1.6 ko:K00789 ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230 M00034,M00035,M00368,M00609 R00177,R04771 RC00021,RC01211 ko00000,ko00001,ko00002,ko01000 - - - S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N QTD2_k127_2841130_3 330214.NIDE0845 2.344e-183 575.0 COG0499@1|root,COG0499@2|Bacteria,3J0AH@40117|Nitrospirae 40117|Nitrospirae H May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine ahcY - 3.3.1.1 ko:K01251 ko00270,ko01100,map00270,map01100 M00035 R00192,R04936 RC00056,RC00069,RC01161,RC01243 ko00000,ko00001,ko00002,ko01000,ko01009,ko04147 - - - AdoHcyase,AdoHcyase_NAD QTD2_k127_2866650_6 330214.NIDE0393 9.678e-61 218.0 COG0741@1|root,COG0741@2|Bacteria,3J19T@40117|Nitrospirae 40117|Nitrospirae M Transglycosylase SLT domain - - - - - - - - - - - - SLT QTD2_k127_2866650_10 330214.NIDE0347 4.824e-06 53.0 COG4715@1|root,COG4715@2|Bacteria 2|Bacteria S zinc ion binding yehQ GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - - - - - - - - - - SWIM QTD2_k127_2866650_3 330214.NIDE0390 6.264e-122 398.0 COG2199@1|root,COG3706@2|Bacteria,3J17A@40117|Nitrospirae 40117|Nitrospirae T diguanylate cyclase - - - - - - - - - - - - GGDEF QTD2_k127_2866650_1 330214.NIDE0389 5.878e-135 436.0 COG4677@1|root,COG4677@2|Bacteria 2|Bacteria G pectinesterase activity - - - - - - - - - - - - Beta_helix,Lipase_GDSL_2,NosD,Pectate_lyase_3 QTD2_k127_2866650_7 330214.NIDE0388 1.69e-55 206.0 COG1729@1|root,COG1729@2|Bacteria 2|Bacteria S protein trimerization - - - - - - - - - - - - FecR,TPR_16,TPR_6,WG_beta_rep QTD2_k127_2866650_0 330214.NIDE0386 1.586e-156 503.0 COG2377@1|root,COG2377@2|Bacteria,3J126@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling anmK - 2.7.1.170 ko:K09001 - - - - ko00000,ko01000 - - - AnmK QTD2_k127_2866650_4 330214.NIDE0385 5.094e-111 366.0 COG0803@1|root,COG0803@2|Bacteria,3J1E3@40117|Nitrospirae 40117|Nitrospirae P Zinc-uptake complex component A periplasmic - - - ko:K09815,ko:K09818 ko02010,map02010 M00242,M00243 - - ko00000,ko00001,ko00002,ko02000 3.A.1.15,3.A.1.15.3,3.A.1.15.5 - - ZnuA QTD2_k127_2866650_2 330214.NIDE0384 6.902e-129 419.0 COG1121@1|root,COG1121@2|Bacteria,3J15M@40117|Nitrospirae 40117|Nitrospirae P AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K09817,ko:K09820 ko02010,map02010 M00242,M00243 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.15,3.A.1.15.3,3.A.1.15.5 - - ABC_tran QTD2_k127_2866650_5 330214.NIDE0383 9.579e-89 296.0 COG1108@1|root,COG1108@2|Bacteria,3J1EQ@40117|Nitrospirae 40117|Nitrospirae P ABC 3 transport family - - - ko:K09816 ko02010,map02010 M00242 - - ko00000,ko00001,ko00002,ko02000 3.A.1.15.3,3.A.1.15.5 - - ABC-3 QTD2_k127_2882540_16 794846.AJQU01000167_gene501 8.044e-26 113.0 COG2202@1|root,COG3850@1|root,COG4191@1|root,COG2202@2|Bacteria,COG3850@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,4B9N5@82115|Rhizobiaceae 28211|Alphaproteobacteria T Histidine kinase - - - - - - - - - - - - HAMP,HATPase_c,HisKA,PAS_3,PAS_4,PAS_8,dCache_1 QTD2_k127_2882540_2 330214.NIDE0595 8.569e-294 911.0 COG0322@1|root,COG0322@2|Bacteria,3J0F1@40117|Nitrospirae 40117|Nitrospirae L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision uvrC - - ko:K03703 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - GIY-YIG,HHH_5,UVR,UvrC_HhH_N QTD2_k127_2882540_7 330214.NIDE0596 3.407e-160 509.0 COG0253@1|root,COG0253@2|Bacteria,3J0JV@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan dapF - 5.1.1.7 ko:K01778 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00527 R02735 RC00302 ko00000,ko00001,ko00002,ko01000 - - - DAP_epimerase QTD2_k127_2882540_11 330214.NIDE0597 6.187e-69 235.0 COG0346@1|root,COG0346@2|Bacteria,3J15P@40117|Nitrospirae 40117|Nitrospirae E Glyoxalase-like domain - - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase QTD2_k127_2882540_13 330214.NIDE0598 1.467e-59 209.0 COG0454@1|root,COG0456@2|Bacteria 2|Bacteria K acetyltransferase - - 3.5.1.104 ko:K22278 - - - - ko00000,ko01000 - - - Acetyltransf_1,Acetyltransf_10 QTD2_k127_2882540_10 330214.NIDE0599 6.625e-97 323.0 COG0726@1|root,COG0726@2|Bacteria 2|Bacteria G polysaccharide deacetylase - - - - - - - - - - - - Polysacc_deac_1 QTD2_k127_2882540_17 759913.SDSE_0232 2.056e-06 60.0 COG3275@1|root,COG3275@2|Bacteria,1V74I@1239|Firmicutes,4IPX2@91061|Bacilli 91061|Bacilli T Pfam:DUF3816 - - - ko:K16923 - M00582 - - ko00000,ko00002,ko02000 3.A.1.28 - - ECF_trnsprt QTD2_k127_2882540_9 330214.NIDE0601 4.345e-100 334.0 COG1295@1|root,COG1295@2|Bacteria,3J17V@40117|Nitrospirae 40117|Nitrospirae S Virulence factor BrkB - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB QTD2_k127_2882540_5 330214.NIDE0602 3.594e-213 672.0 COG1007@1|root,COG1007@2|Bacteria,3J0FN@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M QTD2_k127_2882540_4 330214.NIDE0603 2.39e-233 731.0 COG1008@1|root,COG1008@2|Bacteria,3J0EQ@40117|Nitrospirae 40117|Nitrospirae C Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - 1.6.5.3 ko:K00342 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M QTD2_k127_2882540_1 330214.NIDE0604 0.0 1017.0 COG1009@1|root,COG1009@2|Bacteria,3J0AN@40117|Nitrospirae 2|Bacteria CP NADH-quinone oxidoreductase nuoL - 1.6.5.3 ko:K00341 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - NADH5_C,Proton_antipo_C,Proton_antipo_M,Proton_antipo_N QTD2_k127_2882540_15 330214.NIDE0605 5.095e-39 149.0 COG0713@1|root,COG0713@2|Bacteria,3J0SN@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 ko:K00340 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q2 QTD2_k127_2882540_14 330214.NIDE0606 3.117e-57 203.0 COG0839@1|root,COG0839@2|Bacteria,3J0RP@40117|Nitrospirae 40117|Nitrospirae C Belongs to the complex I subunit 6 family - - 1.6.5.3 ko:K00339 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q3 QTD2_k127_2882540_8 330214.NIDE0607 5.152e-112 362.0 COG1143@1|root,COG1143@2|Bacteria,3J0N0@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00338 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer4 QTD2_k127_2882540_6 330214.NIDE0608 5.312e-201 629.0 COG1005@1|root,COG1005@2|Bacteria,3J0E2@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone nuoH - 1.6.5.3 ko:K00337 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - NADHdh QTD2_k127_2882540_0 330214.NIDE0609 0.0 1323.0 COG3383@1|root,COG3383@2|Bacteria,3J0UR@40117|Nitrospirae 40117|Nitrospirae C Molydopterin dinucleotide binding domain - - 1.17.1.9 ko:K00123 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - Molybdopterin,Molydop_binding QTD2_k127_2882540_3 330214.NIDE0611 2.549e-263 814.0 COG1894@1|root,COG1894@2|Bacteria,3J0WX@40117|Nitrospirae 40117|Nitrospirae C NADH-ubiquinone oxidoreductase-F iron-sulfur binding region - - 1.6.5.3 ko:K00335 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_51K,NADH_4Fe-4S,SLBB QTD2_k127_2882540_12 330214.NIDE0612 8.522e-66 225.0 COG1905@1|root,COG1905@2|Bacteria 2|Bacteria C 2 iron, 2 sulfur cluster binding nuoE - 1.6.5.3,1.6.99.3 ko:K00334,ko:K03943 ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016 M00143,M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1,3.D.1.6 - - 2Fe-2S_thioredx QTD2_k127_2934268_4 330214.NIDE1647 2.202e-14 76.0 COG3417@1|root,COG3417@2|Bacteria,3J16N@40117|Nitrospirae 40117|Nitrospirae M Peptidoglycan-synthase activator LpoB - - - ko:K07337 - - - - ko00000 - - - LpoB QTD2_k127_2934268_2 330214.NIDE1646 1.357e-86 290.0 2EUFJ@1|root,33MXU@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - LPP20 QTD2_k127_2934268_1 330214.NIDE1644 6.843e-175 559.0 COG0457@1|root,COG4249@1|root,COG0457@2|Bacteria,COG4249@2|Bacteria 2|Bacteria S B-1 B cell differentiation - - - - - - - - - - - - DUF4384,Peptidase_C14 QTD2_k127_2934268_0 330214.NIDE1643 0.0 1133.0 COG0365@1|root,COG0365@2|Bacteria,3J0BJ@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA - - 6.2.1.1 ko:K01895 ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200 M00357 R00235,R00236,R00316,R00926,R01354 RC00004,RC00012,RC00043,RC00070,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACAS_N,AMP-binding,AMP-binding_C QTD2_k127_2966496_7 330214.NIDE3358 5.865e-35 148.0 COG1729@1|root,COG4372@1|root,COG1729@2|Bacteria,COG4372@2|Bacteria 2|Bacteria Q Transposase - - - ko:K01991,ko:K02557,ko:K07161,ko:K07484 ko02026,ko02030,ko02040,map02026,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1,1.B.18 - - DDE_Tnp_IS66,DDE_Tnp_IS66_C,DUF3084,LZ_Tnp_IS66,TPR_6,zf-IS66 QTD2_k127_2966496_3 330214.NIDE3359 5.852e-73 253.0 COG2885@1|root,COG2885@2|Bacteria,3J17Q@40117|Nitrospirae 2|Bacteria M Belongs to the ompA family pal - - ko:K03640 - - - - ko00000,ko02000 2.C.1.2 - - OmpA QTD2_k127_2966496_0 330214.NIDE3360 2.034e-237 739.0 COG0823@1|root,COG0823@2|Bacteria,3J0U9@40117|Nitrospirae 40117|Nitrospirae U WD40-like Beta Propeller Repeat - - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PD40 QTD2_k127_2966496_6 330214.NIDE3361 7.221e-54 202.0 COG0810@1|root,COG0810@2|Bacteria 2|Bacteria M energy transducer activity - - - ko:K03646,ko:K03832 - - - - ko00000,ko02000 2.C.1.1,2.C.1.2 - - CarbopepD_reg_2,TonB_2,TonB_C QTD2_k127_2966496_5 330214.NIDE3362 2.928e-63 220.0 COG0848@1|root,COG0848@2|Bacteria,3J0T6@40117|Nitrospirae 40117|Nitrospirae U Biopolymer transport protein ExbD/TolR - - - ko:K03560 - - - - ko00000,ko02000 1.A.30.2.2 - - ExbD QTD2_k127_2966496_4 330214.NIDE3363 7.735e-71 247.0 COG0811@1|root,COG0811@2|Bacteria,3J0PX@40117|Nitrospirae 40117|Nitrospirae U MotA/TolQ/ExbB proton channel family - - - ko:K03562 ko01120,map01120 - - - ko00000,ko02000 1.A.30.2.2 - - MotA_ExbB QTD2_k127_2966496_1 330214.NIDE3364 9.35e-98 329.0 COG4974@1|root,COG4974@2|Bacteria,3J0KV@40117|Nitrospirae 40117|Nitrospirae D Phage integrase, N-terminal SAM-like domain xerD - - ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase QTD2_k127_2966496_2 330214.NIDE3365 1.184e-90 311.0 COG0683@1|root,COG0683@2|Bacteria,3J18U@40117|Nitrospirae 40117|Nitrospirae E Periplasmic binding protein - - - - - - - - - - - - Peripla_BP_6 QTD2_k127_2974851_3 1333998.M2A_2938 9.133e-18 89.0 COG1357@1|root,COG1357@2|Bacteria,1N7U9@1224|Proteobacteria,2U6GM@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Pentapeptide repeat protein - - - - - - - - - - - - Pentapeptide QTD2_k127_2974851_1 330214.NIDE3675 1.81e-109 359.0 2DKWD@1|root,30KRK@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Phenol_MetA_deg QTD2_k127_2974851_0 330214.NIDE3676 6.358e-144 463.0 2DBP7@1|root,2ZA82@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_2974851_2 1123366.TH3_00415 5.477e-109 363.0 28K7U@1|root,2Z9VT@2|Bacteria,1RFB2@1224|Proteobacteria,2UEY7@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_2974851_4 1297863.APJF01000043_gene209 1.954e-11 67.0 COG2801@1|root,COG2801@2|Bacteria,1MVN5@1224|Proteobacteria,2TQK0@28211|Alphaproteobacteria,3JZ81@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - HTH_21,rve,rve_3 QTD2_k127_3001625_1 330214.NIDE0224 3.916e-110 359.0 COG4251@1|root,COG5278@1|root,COG4251@2|Bacteria,COG5278@2|Bacteria,3J12S@40117|Nitrospirae 40117|Nitrospirae T CHASE3 domain - - - - - - - - - - - - CHASE3,HATPase_c,HisKA QTD2_k127_3001625_2 330214.NIDE0223 1.786e-77 267.0 COG0745@1|root,COG0745@2|Bacteria,3J151@40117|Nitrospirae 40117|Nitrospirae T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg QTD2_k127_3001625_0 330214.NIDE0222 1.464e-221 698.0 COG0745@1|root,COG0784@1|root,COG4191@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG4191@2|Bacteria,3J10H@40117|Nitrospirae 40117|Nitrospirae T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_9,Response_reg QTD2_k127_3001625_3 330214.NIDE0221 7.666e-74 259.0 COG3698@1|root,COG3698@2|Bacteria 2|Bacteria S Phosphodiester glycosidase - - - - - - - - - - - - NAGPA QTD2_k127_3001625_4 330214.NIDE0220 1.885e-54 194.0 COG0607@1|root,COG0607@2|Bacteria 2|Bacteria P Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - - - - - - - - - - Rhodanese QTD2_k127_3010535_1 378806.STAUR_1873 5.52e-23 106.0 2C852@1|root,32YB2@2|Bacteria,1N9HY@1224|Proteobacteria,42WCG@68525|delta/epsilon subdivisions,2WS1H@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Domain of unknown function (DUF4136) - - - - - - - - - - - - DUF4136 QTD2_k127_3010535_0 378806.STAUR_1873 1.527e-26 116.0 2C852@1|root,32YB2@2|Bacteria,1N9HY@1224|Proteobacteria,42WCG@68525|delta/epsilon subdivisions,2WS1H@28221|Deltaproteobacteria 28221|Deltaproteobacteria S Domain of unknown function (DUF4136) - - - - - - - - - - - - DUF4136 QTD2_k127_3010535_3 330214.NIDE1263 0.0002859 50.0 29A8R@1|root,2ZX9N@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_3028941_0 330214.NIDE1707 0.0 1168.0 COG0013@1|root,COG0013@2|Bacteria,3J0D3@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD QTD2_k127_3028941_3 1122207.MUS1_04595 1.52e-07 61.0 COG2137@1|root,COG2137@2|Bacteria,1N6P6@1224|Proteobacteria,1SCMF@1236|Gammaproteobacteria,1XM17@135619|Oceanospirillales 135619|Oceanospirillales S Modulates RecA activity recX - - ko:K03565 - - - - ko00000,ko03400 - - - RecX QTD2_k127_3028941_1 330214.NIDE1705 2.211e-188 592.0 COG0468@1|root,COG0468@2|Bacteria,3J0C1@40117|Nitrospirae 40117|Nitrospirae L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage recA - - ko:K03553 ko03440,map03440 M00729 - - ko00000,ko00001,ko00002,ko03400 - - - RecA QTD2_k127_3029917_1 330214.NIDE0370 2.515e-216 673.0 COG0056@1|root,COG0056@2|Bacteria,3J0CZ@40117|Nitrospirae 40117|Nitrospirae C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit atpA - 3.6.3.14 ko:K02111 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N QTD2_k127_3029917_2 330214.NIDE0371 3.264e-122 398.0 COG0224@1|root,COG0224@2|Bacteria,3J0J8@40117|Nitrospirae 40117|Nitrospirae C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex atpG - - ko:K02115 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt QTD2_k127_3029917_0 330214.NIDE0372 2.037e-298 917.0 COG0055@1|root,COG0055@2|Bacteria,3J0BN@40117|Nitrospirae 40117|Nitrospirae C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits atpD - 3.6.3.14 ko:K02112 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_N QTD2_k127_3041528_1 330214.NIDE2207 3.212e-151 487.0 COG2008@1|root,COG2008@2|Bacteria 2|Bacteria E L-allo-threonine aldolase activity ltaA - 4.1.2.48 ko:K01620 ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230 - R00751,R06171 RC00312,RC00372 ko00000,ko00001,ko01000 - - - Beta_elim_lyase QTD2_k127_3041528_2 330214.NIDE2205 1.997e-104 344.0 COG1708@1|root,COG1708@2|Bacteria 2|Bacteria S nucleotidyltransferase activity - - - ko:K17882 - - - - ko00000,ko01000,ko01504 - - - KNTase_C,NTP_transf_2 QTD2_k127_3041528_0 330214.NIDE2203 2.778e-284 878.0 COG0364@1|root,COG0364@2|Bacteria,3J0XD@40117|Nitrospirae 40117|Nitrospirae G Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone - - 1.1.1.363,1.1.1.49 ko:K00036 ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230 M00004,M00006,M00008 R00835,R02736,R10907 RC00001,RC00066 ko00000,ko00001,ko00002,ko01000,ko04147 - - - G6PD_C,G6PD_N QTD2_k127_3041528_4 330214.NIDE2202 5.825e-32 128.0 COG3118@1|root,COG3118@2|Bacteria 2|Bacteria O belongs to the thioredoxin family - - 1.8.1.9 ko:K00384,ko:K03671 ko00450,ko04621,ko05418,map00450,map04621,map05418 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000,ko03110 - - - Thioredoxin QTD2_k127_3041528_6 330214.NIDE2201 1.398e-14 76.0 COG2755@1|root,COG2755@2|Bacteria 2|Bacteria E lipolytic protein G-D-S-L family - - - - - - - - - - - - Lipase_GDSL_2 QTD2_k127_3045013_0 330214.NIDE0872 1.902e-150 486.0 COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,3J12F@40117|Nitrospirae 40117|Nitrospirae P TrkA-N domain - - - ko:K03455,ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6,2.A.37 - - Ion_trans_2,TrkA_C,TrkA_N QTD2_k127_3045013_1 330214.NIDE2678 3.366e-19 94.0 COG2913@1|root,COG2913@2|Bacteria 2|Bacteria J Gram-negative-bacterium-type cell outer membrane assembly - - - ko:K06186 - - - - ko00000,ko02000 1.B.33.1 - - SmpA_OmlA QTD2_k127_3045013_3 211114.JOEF01000002_gene4518 1.736e-05 49.0 COG5607@1|root,COG5607@2|Bacteria,2GJZH@201174|Actinobacteria,4E2RA@85010|Pseudonocardiales 201174|Actinobacteria S CHAD - - - - - - - - - - - - CHAD,CYTH QTD2_k127_3047297_3 330214.NIDE3783 3.765e-31 132.0 COG0517@1|root,COG0517@2|Bacteria 2|Bacteria S IMP dehydrogenase activity - - - ko:K07182 - - - - ko00000 - - - CBS,GGDEF QTD2_k127_3047297_1 330214.NIDE3782 4.405e-63 220.0 COG0517@1|root,COG0517@2|Bacteria 2|Bacteria S IMP dehydrogenase activity - - - ko:K07182 - - - - ko00000 - - - CBS,GGDEF QTD2_k127_3047297_0 330214.NIDE2070 3.451e-132 433.0 COG0745@1|root,COG2202@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria 2|Bacteria T Pas domain - - 3.1.3.3,4.6.1.1 ko:K01768,ko:K07315 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000,ko03021 - - - CHASE2,GAF,GAF_2,GGDEF,HATPase_c_2,PAS,PAS_3,PAS_4,PAS_9,Response_reg,SpoIIE QTD2_k127_3052969_0 1267533.KB906738_gene2315 4.721e-270 832.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - ko:K17285 - - - - ko00000,ko04147 - - - SBP56 QTD2_k127_3052969_1 234267.Acid_5196 2.111e-111 364.0 COG0500@1|root,COG2226@2|Bacteria,3Y4B3@57723|Acidobacteria 57723|Acidobacteria Q PFAM Methyltransferase type 11 - - - - - - - - - - - - Methyltransf_11 QTD2_k127_3052969_2 869213.JCM21142_72806 5.862e-23 100.0 COG3934@1|root,COG3934@2|Bacteria 2|Bacteria G Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - - - - - - - - - - CBM_35,Cellulase QTD2_k127_3055928_0 1131553.JIBI01000012_gene825 2.166e-116 383.0 COG3055@1|root,COG3055@2|Bacteria,1QSB4@1224|Proteobacteria,2WBPR@28216|Betaproteobacteria,372CS@32003|Nitrosomonadales 28216|Betaproteobacteria S Galactose oxidase, central domain - - - - - - - - - - - - Kelch_1 QTD2_k127_3055928_1 1304885.AUEY01000001_gene3309 9.765e-51 186.0 COG1704@1|root,COG1704@2|Bacteria,1MVH0@1224|Proteobacteria,42S15@68525|delta/epsilon subdivisions,2WNI1@28221|Deltaproteobacteria,2MNGZ@213118|Desulfobacterales 28221|Deltaproteobacteria S LemA family - - - ko:K03744 - - - - ko00000 - - - LemA QTD2_k127_3055928_3 1396858.Q666_05560 1.673e-14 82.0 COG1704@1|root,COG1704@2|Bacteria 2|Bacteria S LemA family - - - ko:K03744 - - - - ko00000 - - - GIDE,LemA QTD2_k127_3066580_0 682795.AciX8_4389 0.0 1371.0 COG3696@1|root,COG3696@2|Bacteria,3Y3AQ@57723|Acidobacteria,2JKZY@204432|Acidobacteriia 204432|Acidobacteriia P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K07787 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4 - - ACR_tran QTD2_k127_3093410_1 1131730.BAVI_23128 6.646e-86 305.0 COG0584@1|root,COG3540@1|root,COG0584@2|Bacteria,COG3540@2|Bacteria,1UY23@1239|Firmicutes,4HEAD@91061|Bacilli,1ZCIE@1386|Bacillus 91061|Bacilli C glycerophosphoryl diester phosphodiesterase glpQ - 3.1.3.1,3.1.4.46 ko:K01113,ko:K01126 ko00564,ko00790,ko01100,ko02020,map00564,map00790,map01100,map02020 M00126 R01030,R01470,R04620 RC00017,RC00425 ko00000,ko00001,ko00002,ko01000 - - - GDPD QTD2_k127_3093410_0 330214.NIDE1059 6.07e-173 551.0 COG0404@1|root,COG0404@2|Bacteria 2|Bacteria E The glycine cleavage system catalyzes the degradation of glycine gcvT - 1.5.99.5,2.1.2.10 ko:K00605,ko:K06980,ko:K22086 ko00260,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,map00260,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200 M00532 R00609,R01221,R02300,R04125 RC00022,RC00069,RC00183,RC00190,RC00557,RC02834 ko00000,ko00001,ko00002,ko01000,ko03016 - - - GCV_T,GCV_T_C QTD2_k127_3093410_4 330214.NIDE1060 7.173e-25 104.0 COG2199@1|root,COG3706@2|Bacteria 2|Bacteria T GGDEF domain - - - - - - - - - - - - GGDEF QTD2_k127_3103114_4 330214.NIDE1531 1.258e-120 392.0 COG0613@1|root,COG0613@2|Bacteria 2|Bacteria Q PHP domain protein trpH - 3.1.3.97,4.1.2.13 ko:K01624,ko:K07053 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003,M00165,M00167,M00344,M00345 R00188,R01068,R01070,R01829,R02568,R11188 RC00078,RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - PHP QTD2_k127_3103114_5 330214.NIDE1532 3.161e-118 390.0 COG1539@1|root,COG2520@1|root,COG1539@2|Bacteria,COG2520@2|Bacteria 2|Bacteria J tRNA (guanine(37)-N(1))-methyltransferase activity folB - 1.13.11.81,2.1.1.228,3.1.3.18,4.1.2.25,5.1.99.8 ko:K01091,ko:K01633,ko:K15429 ko00630,ko00790,ko01100,ko01110,ko01130,map00630,map00790,map01100,map01110,map01130 M00126,M00840 R00597,R01334,R03504,R11037,R11073 RC00003,RC00017,RC00334,RC00721,RC00943,RC01479,RC03333,RC03334 ko00000,ko00001,ko00002,ko01000,ko03016 - - - FolB,rRNA_methylase QTD2_k127_3103114_6 330214.NIDE1571 1.248e-83 280.0 COG0315@1|root,COG0315@2|Bacteria,3J0PN@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) moaC - 4.6.1.17 ko:K03637 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R11372 RC03425 ko00000,ko00001,ko01000 - - - MoaC QTD2_k127_3103114_9 330214.NIDE1572 1.349e-30 130.0 COG1977@1|root,COG1977@2|Bacteria 2|Bacteria H Mo-molybdopterin cofactor metabolic process moaD - - ko:K03636 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS QTD2_k127_3103114_8 330214.NIDE1573 1.041e-74 258.0 COG0314@1|root,COG0314@2|Bacteria,3J1AN@40117|Nitrospirae 40117|Nitrospirae H MoaE protein - - 2.8.1.12 ko:K03635 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09395 RC02507 ko00000,ko00001,ko01000 - - - MoaE QTD2_k127_3103114_3 330214.NIDE1574 1.188e-154 498.0 COG2896@1|root,COG2896@2|Bacteria,3J0PB@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate moaA - 4.1.99.22 ko:K03639 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09394 RC03420 ko00000,ko00001,ko01000 - - - Fer4_14,Mob_synth_C,Radical_SAM QTD2_k127_3103114_7 330214.NIDE1575 8.432e-77 265.0 COG2215@1|root,COG2215@2|Bacteria 2|Bacteria O Belongs to the NiCoT transporter (TC 2.A.52) family ureH - - - - - - - - - - - DsbD_2,NicO QTD2_k127_3103114_2 330214.NIDE1577 5.134e-159 503.0 COG0777@1|root,COG0777@2|Bacteria,3J0CK@40117|Nitrospirae 40117|Nitrospirae I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA accD - 2.1.3.15,6.4.1.2 ko:K01963 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans QTD2_k127_3103114_1 330214.NIDE1579 5.378e-166 533.0 COG0285@1|root,COG0285@2|Bacteria,3J0I6@40117|Nitrospirae 40117|Nitrospirae H Mur ligase middle domain - - 6.3.2.12,6.3.2.17 ko:K11754 ko00790,ko01100,map00790,map01100 M00126,M00841 R00942,R02237,R04241 RC00064,RC00090,RC00162 ko00000,ko00001,ko00002,ko01000 - - - Mur_ligase_C,Mur_ligase_M QTD2_k127_3103114_0 330214.NIDE1580 0.0 1127.0 COG1452@1|root,COG1452@2|Bacteria,3J0QI@40117|Nitrospirae 40117|Nitrospirae M involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane - - - ko:K04744 - - - - ko00000,ko02000 1.B.42.1 - - OstA QTD2_k127_3124104_1 330214.NIDE0719 9.74e-128 416.0 28IX1@1|root,2Z8V3@2|Bacteria 2|Bacteria S Protein of unknown function (DUF2914) - - - - - - - - - - - - DUF2914 QTD2_k127_3124104_2 330214.NIDE0715 1.985e-73 253.0 2E469@1|root,32Z27@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_3124104_5 330214.NIDE0701 2.02e-41 154.0 COG0142@1|root,COG0142@2|Bacteria,3J0H1@40117|Nitrospirae 40117|Nitrospirae H Polyprenyl synthetase - - 2.5.1.1,2.5.1.10,2.5.1.29 ko:K13789 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00364,M00366 R01658,R02003,R02061 RC00279 ko00000,ko00001,ko00002,ko01000,ko01006 - - - polyprenyl_synt QTD2_k127_3131798_5 118166.JH976537_gene4829 1.321e-10 67.0 COG1565@1|root,COG1565@2|Bacteria,1G16Z@1117|Cyanobacteria,1H7S5@1150|Oscillatoriales 1117|Cyanobacteria S acr, cog1565 - - - - - - - - - - - - Methyltransf_28 QTD2_k127_3131798_0 330214.NIDE0278 1.394e-237 748.0 COG2812@1|root,COG2812@2|Bacteria,3J0DD@40117|Nitrospirae 40117|Nitrospirae L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity dnaX - 2.7.7.7 ko:K02343 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNA_pol3_gamma3 QTD2_k127_3131798_3 330214.NIDE0279 6.678e-40 151.0 COG0718@1|root,COG0718@2|Bacteria,3J1EY@40117|Nitrospirae 40117|Nitrospirae L Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection - - - ko:K09747 - - - - ko00000 - - - YbaB_DNA_bd QTD2_k127_3131798_1 330214.NIDE0280 8.789e-110 358.0 COG0353@1|root,COG0353@2|Bacteria,3J0KB@40117|Nitrospirae 40117|Nitrospirae L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO recR - - ko:K06187 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecR,Toprim_4 QTD2_k127_3131798_4 330214.NIDE0281 1.016e-37 146.0 COG1734@1|root,COG1734@2|Bacteria,3J0TH@40117|Nitrospirae 40117|Nitrospirae T Prokaryotic dksA/traR C4-type zinc finger - - - ko:K06204 ko02026,map02026 - - - ko00000,ko00001,ko03000,ko03009,ko03021 - - - zf-dskA_traR QTD2_k127_3131798_2 330214.NIDE0282 1.66e-47 173.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE0282|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_3134291_0 330214.NIDE3384 0.0 2057.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,3J0SV@40117|Nitrospirae 40117|Nitrospirae C Conserved region in glutamate synthase - - 1.4.1.13,1.4.1.14 ko:K00265 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase QTD2_k127_3134291_1 330214.NIDE3383 8.599e-131 421.0 COG0493@1|root,COG0493@2|Bacteria,3J152@40117|Nitrospirae 40117|Nitrospirae C Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - 1.4.1.13,1.4.1.14 ko:K00266 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - Fer4,Fer4_20,GXGXG,Pyr_redox_2,Pyr_redox_3 QTD2_k127_3134291_2 1316936.K678_03307 9.987e-42 164.0 COG0493@1|root,COG0493@2|Bacteria,1MU2H@1224|Proteobacteria,2TSE2@28211|Alphaproteobacteria,2JQ6Q@204441|Rhodospirillales 204441|Rhodospirillales E COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - - 1.4.1.13,1.4.1.14 ko:K00266 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - Fer4_20,Pyr_redox_2 QTD2_k127_3144326_3 330214.NIDE1376 1.807e-38 147.0 COG1391@1|root,COG2844@1|root,COG1391@2|Bacteria,COG2844@2|Bacteria 2|Bacteria O Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen glnE GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 1.1.1.3,1.4.1.2,2.7.7.42,2.7.7.59,2.7.7.89 ko:K00003,ko:K00982,ko:K00990,ko:K06950,ko:K15371 ko00220,ko00250,ko00260,ko00270,ko00300,ko00430,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,ko02020,map00220,map00250,map00260,map00270,map00300,map00430,map00910,map01100,map01110,map01120,map01130,map01230,map02020 M00017,M00018 R00243,R01773,R01775 RC00006,RC00087,RC02799 ko00000,ko00001,ko00002,ko01000 - - - GlnD_UR_UTase,GlnE,HD QTD2_k127_3144326_0 330214.NIDE1377 5.678e-211 670.0 COG1391@1|root,COG1391@2|Bacteria 2|Bacteria H [glutamate-ammonia-ligase] adenylyltransferase activity glnE GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 2.7.7.42,2.7.7.89 ko:K00982 - - - - ko00000,ko01000 - - - GlnD_UR_UTase,GlnE QTD2_k127_3144326_1 330214.NIDE0866 8.579e-50 186.0 COG2854@1|root,COG2854@2|Bacteria,3J13Z@40117|Nitrospirae 40117|Nitrospirae Q Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07323 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - MlaC QTD2_k127_3144326_2 35128.Thaps22645 1.778e-40 164.0 2EF9S@1|root,2T4ED@2759|Eukaryota,2XEWT@2836|Bacillariophyta 2836|Bacillariophyta - - - - - - - - - - - - - - - QTD2_k127_321946_15 1232410.KI421421_gene3552 1.592e-18 90.0 COG0360@1|root,COG0360@2|Bacteria,1RH82@1224|Proteobacteria,42TJR@68525|delta/epsilon subdivisions,2WRDG@28221|Deltaproteobacteria,43SQP@69541|Desulfuromonadales 28221|Deltaproteobacteria J Ribosomal protein S6 rpsF GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - ko:K02990 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S6 QTD2_k127_321946_10 330214.NIDE0790 7.236e-66 227.0 COG0629@1|root,COG0629@2|Bacteria,3J0NB@40117|Nitrospirae 40117|Nitrospirae L Single-strand binding protein family - - - ko:K03111 ko03030,ko03430,ko03440,map03030,map03430,map03440 - - - ko00000,ko00001,ko03029,ko03032,ko03400 - - - SSB QTD2_k127_321946_14 1144275.COCOR_02410 4.276e-24 104.0 COG0238@1|root,COG0238@2|Bacteria,1MZ8U@1224|Proteobacteria,42VJQ@68525|delta/epsilon subdivisions,2WR7Z@28221|Deltaproteobacteria 28221|Deltaproteobacteria J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit rpsR GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02963 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S18 QTD2_k127_321946_11 330214.NIDE0792 3.652e-45 173.0 COG1399@1|root,COG1399@2|Bacteria,3J0UQ@40117|Nitrospirae 40117|Nitrospirae S Uncharacterized ACR, COG1399 - - - ko:K07040 - - - - ko00000 - - - DUF177 QTD2_k127_321946_16 1161902.HMPREF0378_1432 3.649e-17 82.0 COG0333@1|root,COG0333@2|Bacteria,1VEFI@1239|Firmicutes,24QM0@186801|Clostridia,3WCP9@538999|Clostridiales incertae sedis 186801|Clostridia J Belongs to the bacterial ribosomal protein bL32 family rpmF - - ko:K02911 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_L32p QTD2_k127_321946_1 330214.NIDE0794 8.671e-179 565.0 COG0416@1|root,COG0416@2|Bacteria,3J0DY@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA plsX - 2.3.1.15 ko:K03621 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FA_synthesis QTD2_k127_321946_2 330214.NIDE0795 1.91e-166 527.0 COG0332@1|root,COG0332@2|Bacteria,3J0FW@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids fabH - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C QTD2_k127_321946_3 330214.NIDE0796 4.153e-151 483.0 COG0331@1|root,COG0331@2|Bacteria,3J0IX@40117|Nitrospirae 40117|Nitrospirae I Acyl transferase domain fabD - 2.3.1.39 ko:K00645 ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212 M00082 R01626,R11671 RC00004,RC00039,RC02727 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyl_transf_1 QTD2_k127_321946_4 330214.NIDE0797 1.465e-130 419.0 COG1028@1|root,COG1028@2|Bacteria,3J0J6@40117|Nitrospirae 40117|Nitrospirae IQ Evidence 2a Function of homologous gene experimentally demonstrated in an other organism fabG - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 QTD2_k127_321946_12 330214.NIDE0798 8.518e-34 132.0 COG0236@1|root,COG0236@2|Bacteria,3J0RX@40117|Nitrospirae 40117|Nitrospirae IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis acpP - - ko:K02078 - - - - ko00000,ko00001 - - - PP-binding QTD2_k127_321946_0 330214.NIDE0799 8.323e-239 743.0 COG0304@1|root,COG0304@2|Bacteria,3J0DH@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP - - 2.3.1.179 ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt QTD2_k127_321946_7 330214.NIDE0800 4.083e-79 273.0 COG0571@1|root,COG0571@2|Bacteria,3J119@40117|Nitrospirae 40117|Nitrospirae J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism - - 3.1.26.3 ko:K03685 ko03008,ko05205,map03008,map05205 - - - ko00000,ko00001,ko01000,ko03009,ko03019,ko03036 - - - Ribonucleas_3_3,dsrm QTD2_k127_321946_9 330214.NIDE0801 6.987e-69 239.0 COG0652@1|root,COG0652@2|Bacteria,3J18H@40117|Nitrospirae 40117|Nitrospirae O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - 5.2.1.8 ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase QTD2_k127_321946_8 330214.NIDE0801 3.726e-71 246.0 COG0652@1|root,COG0652@2|Bacteria,3J18H@40117|Nitrospirae 40117|Nitrospirae O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - 5.2.1.8 ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase QTD2_k127_321946_5 330214.NIDE0808 2.483e-116 380.0 2EGFY@1|root,33A7X@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_321946_6 330214.NIDE0809 2.627e-110 369.0 COG2706@1|root,COG2706@2|Bacteria 2|Bacteria G 6-phosphogluconolactonase activity - - - - - - - - - - - - FG-GAP,VCBS QTD2_k127_321946_13 330214.NIDE0810 2.585e-27 114.0 COG0190@1|root,COG0190@2|Bacteria,3J0FT@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate folD GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 ko:K01491 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R01220,R01655 RC00202,RC00578 ko00000,ko00001,ko00002,ko01000 - - - THF_DHG_CYH,THF_DHG_CYH_C QTD2_k127_3235048_1 330214.NIDE3228 2.777e-28 115.0 COG0745@1|root,COG0745@2|Bacteria 330214.NIDE3228|- T phosphorelay signal transduction system - - - - - - - - - - - - - QTD2_k127_3235048_0 671143.DAMO_1116 8.771e-69 245.0 COG0836@1|root,COG0836@2|Bacteria,2NP3C@2323|unclassified Bacteria 2|Bacteria M Mannose-6-phosphate isomerase manC - 2.7.7.13,5.3.1.8 ko:K00971,ko:K16011 ko00051,ko00520,ko01100,ko01110,ko01130,ko02025,map00051,map00520,map01100,map01110,map01130,map02025 M00114,M00361,M00362 R00885,R01819 RC00002,RC00376 ko00000,ko00001,ko00002,ko01000 - - - MannoseP_isomer,NTP_transferase QTD2_k127_3243932_3 330214.NIDE3850 6.046e-148 477.0 COG2403@1|root,COG2403@2|Bacteria 2|Bacteria S cyclic 2,3-diphosphoglycerate synthetase activity cpgS - - ko:K05716 - - R03298 RC00900 ko00000,ko01000 - - - cobW QTD2_k127_3243932_0 330214.NIDE3851 0.0 1005.0 COG0365@1|root,COG0365@2|Bacteria,3J0BJ@40117|Nitrospirae 2|Bacteria I Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA acsA - 6.2.1.1 ko:K01895 ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200 M00357 R00235,R00236,R00316,R00926,R01354 RC00004,RC00012,RC00043,RC00070,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACAS_N,AMP-binding,AMP-binding_C QTD2_k127_3243932_2 330214.NIDE3852 2.866e-155 495.0 COG1071@1|root,COG1071@2|Bacteria 2|Bacteria C oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor pdhA - 1.2.4.1,1.2.4.4 ko:K00161,ko:K00162,ko:K11381,ko:K21416 ko00010,ko00020,ko00280,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00280,map00620,map00640,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00036,M00307 R00014,R00209,R01699,R03270,R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00004,RC00027,RC00627,RC02742,RC02743,RC02744,RC02882,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C QTD2_k127_3243932_1 330214.NIDE3853 1.819e-177 559.0 COG0022@1|root,COG0022@2|Bacteria 2|Bacteria C oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor pdhB - 1.2.4.1,1.2.4.4 ko:K00162,ko:K11381 ko00010,ko00020,ko00280,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00280,map00620,map00640,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00036,M00307 R00014,R00209,R01699,R03270,R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00004,RC00027,RC00627,RC02742,RC02743,RC02744,RC02882,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C QTD2_k127_3243932_4 1234664.AMRO01000021_gene1057 4.297e-131 440.0 COG0469@1|root,COG0469@2|Bacteria,1UYUI@1239|Firmicutes,4HE41@91061|Bacilli,1WF0X@129337|Geobacillus 91061|Bacilli G Pyruvate kinase, barrel domain - - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK QTD2_k127_3266731_3 330214.NIDE2827 6.682e-28 120.0 COG1388@1|root,COG3170@1|root,COG1388@2|Bacteria,COG3170@2|Bacteria 2|Bacteria NU translation initiation factor activity - - - - - - - - - - - - LysM,Peptidase_M23 QTD2_k127_3266731_2 330214.NIDE2828 1.77e-49 179.0 COG2165@1|root,COG2165@2|Bacteria 2|Bacteria NU general secretion pathway protein oxpG - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSG QTD2_k127_3266731_1 330214.NIDE2829 3.03e-72 249.0 COG2165@1|root,COG2165@2|Bacteria 2|Bacteria NU general secretion pathway protein pulG - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSG QTD2_k127_3266731_0 330214.NIDE2830 7.971e-174 556.0 COG0457@1|root,COG4796@1|root,COG0457@2|Bacteria,COG4796@2|Bacteria 2|Bacteria U Type ii and iii secretion system protein pulQ - - ko:K02453 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - Cohesin,STN,Secretin,Secretin_N QTD2_k127_3276910_0 330214.NIDE1878 1.368e-132 432.0 COG1032@1|root,COG1032@2|Bacteria 2|Bacteria C radical SAM domain protein - - - - - - - - - - - - B12-binding,Radical_SAM QTD2_k127_3276910_1 886293.Sinac_5029 2.279e-94 316.0 COG1878@1|root,COG1878@2|Bacteria,2IZXG@203682|Planctomycetes 203682|Planctomycetes S Putative cyclase - - - - - - - - - - - - Cyclase QTD2_k127_3276910_2 314260.PB2503_01917 3.555e-21 92.0 COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,2U70T@28211|Alphaproteobacteria 28211|Alphaproteobacteria O methionine sulfoxide reductase MA20_08310 - 1.8.4.12 ko:K07305 - - - - ko00000,ko01000 - - - SelR QTD2_k127_32976_1 7244.FBpp0232334 2.254e-80 289.0 COG1024@1|root,KOG1683@2759|Eukaryota,38CY9@33154|Opisthokonta,3BE3Y@33208|Metazoa,3CXNY@33213|Bilateria,41WE4@6656|Arthropoda,3SFPQ@50557|Insecta,451Y8@7147|Diptera,45TEN@7214|Drosophilidae 33208|Metazoa I It is involved in the biological process described with fatty acid beta-oxidation HADHA GO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003857,GO:0003985,GO:0003988,GO:0004300,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006950,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009062,GO:0009295,GO:0009605,GO:0009611,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010259,GO:0016020,GO:0016042,GO:0016054,GO:0016407,GO:0016408,GO:0016453,GO:0016491,GO:0016507,GO:0016508,GO:0016509,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0016829,GO:0016835,GO:0016836,GO:0017076,GO:0019395,GO:0019752,GO:0019866,GO:0030258,GO:0030554,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032868,GO:0032991,GO:0033218,GO:0034440,GO:0036094,GO:0036125,GO:0042060,GO:0042221,GO:0042493,GO:0042579,GO:0042594,GO:0042645,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046395,GO:0048037,GO:0048856,GO:0050662,GO:0050896,GO:0051287,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:0098798,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901652,GO:1901681,GO:1901698,GO:1901700 1.1.1.211,4.2.1.17 ko:K07515 ko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212 M00013,M00032,M00085,M00087 R01778,R02685,R03026,R03045,R04137,R04170,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04743,R04744,R04745,R04746,R04748,R04749,R05595,R06942,R07935,R07936,R07951,R07952 RC00029,RC00103,RC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103 ko00000,ko00001,ko00002,ko01000 - - - 3HCDH,3HCDH_N,ECH_1 QTD2_k127_32976_0 867903.ThesuDRAFT_01312 7.417e-125 417.0 COG0318@1|root,COG0318@2|Bacteria,1TPSX@1239|Firmicutes,248JC@186801|Clostridia,3WCXQ@538999|Clostridiales incertae sedis 186801|Clostridia IQ Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II - - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C QTD2_k127_3304596_1 330214.NIDE1653 2.144e-144 460.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT_2,zf-HC2 QTD2_k127_3304596_4 330214.NIDE1651 1.994e-73 249.0 COG1848@1|root,COG1848@2|Bacteria 2|Bacteria G Toxic component of a toxin-antitoxin (TA) module. An RNase vapC - - ko:K07064 - - - - ko00000 - - - PIN QTD2_k127_3304596_2 330214.NIDE1649 1.657e-137 448.0 2AAUK@1|root,3107C@2|Bacteria,3J1E0@40117|Nitrospirae 40117|Nitrospirae S LPP20 lipoprotein - - - - - - - - - - - - LPP20 QTD2_k127_3304596_0 330214.NIDE1648 1.732e-186 595.0 COG3014@1|root,COG3014@2|Bacteria,3J14B@40117|Nitrospirae 40117|Nitrospirae S protein conserved in bacteria - - - ko:K09859 - - - - ko00000 - - - - QTD2_k127_3304596_3 330214.NIDE1647 4.792e-89 296.0 COG3417@1|root,COG3417@2|Bacteria,3J16N@40117|Nitrospirae 40117|Nitrospirae M Peptidoglycan-synthase activator LpoB - - - ko:K07337 - - - - ko00000 - - - LpoB QTD2_k127_3321481_0 1449976.KALB_3642 1.855e-61 230.0 COG5607@1|root,COG5607@2|Bacteria,2GJZH@201174|Actinobacteria,4EAUR@85010|Pseudonocardiales 201174|Actinobacteria S CYTH - - - - - - - - - - - - CHAD,CYTH QTD2_k127_3326403_3 330214.NIDE0263 1.947e-43 158.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - DUF4132,HEAT_2 QTD2_k127_3326403_0 330214.NIDE0264 4.864e-205 644.0 COG0683@1|root,COG0683@2|Bacteria 2|Bacteria E ABC-type branched-chain amino acid transport systems, periplasmic component - - - ko:K01999 ko02010,ko02024,map02010,map02024 M00237 - - ko00000,ko00001,ko00002,ko02000 3.A.1.4 - - Peripla_BP_6 QTD2_k127_3326403_2 330214.NIDE0266 1.437e-53 204.0 COG1360@1|root,COG4942@1|root,COG1360@2|Bacteria,COG4942@2|Bacteria 2|Bacteria D peptidase motB - - ko:K02557,ko:K21471 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko01000,ko01002,ko01011,ko02000,ko02035 1.A.30.1 - - OmpA QTD2_k127_3326403_1 269799.Gmet_2522 8.918e-60 210.0 COG1970@1|root,COG1970@2|Bacteria,1RHG8@1224|Proteobacteria,42RNC@68525|delta/epsilon subdivisions,2WP7G@28221|Deltaproteobacteria,43V0M@69541|Desulfuromonadales 28221|Deltaproteobacteria C Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell mscL GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - ko:K03282 - - - - ko00000,ko02000 1.A.22.1 - - MscL QTD2_k127_3331874_2 330214.NIDE4384 1.383e-21 95.0 COG0397@1|root,COG0397@2|Bacteria 2|Bacteria S Uncharacterized ACR, YdiU/UPF0061 family ydiU - - ko:K08997 - - - - ko00000 - - - UPF0061 QTD2_k127_3331874_3 1280949.HAD_07055 0.0001799 49.0 COG0288@1|root,COG0288@2|Bacteria,1MV1U@1224|Proteobacteria,2VEYE@28211|Alphaproteobacteria,44135@69657|Hyphomonadaceae 28211|Alphaproteobacteria E Reversible hydration of carbon dioxide cynT - 4.2.1.1 ko:K01673 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Pro_CA QTD2_k127_3331874_1 330214.NIDE4385 8.779e-46 168.0 COG5609@1|root,COG5609@2|Bacteria,3J180@40117|Nitrospirae 40117|Nitrospirae S Uncharacterized conserved protein (DUF2294) - - - - - - - - - - - - DUF2294 QTD2_k127_3331874_0 330214.NIDE4386 9.085e-119 389.0 COG1009@1|root,COG1009@2|Bacteria,3J0AN@40117|Nitrospirae 40117|Nitrospirae CP NADH-quinone oxidoreductase - - 1.6.5.3 ko:K00341,ko:K05577 ko00190,ko01100,map00190,map01100 M00144,M00145 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M,Proton_antipo_N QTD2_k127_3338506_2 330214.NIDE0147 2.226e-127 409.0 COG2326@1|root,COG2326@2|Bacteria,3J111@40117|Nitrospirae 40117|Nitrospirae S Polyphosphate kinase 2 (PPK2) - - - - - - - - - - - - PPK2 QTD2_k127_3338506_9 56110.Oscil6304_2088 7.609e-36 147.0 COG0265@1|root,COG0457@1|root,COG0265@2|Bacteria,COG0457@2|Bacteria 2|Bacteria S peptidyl-tyrosine sulfation - - - - - - - - - - - - TPR_1,TPR_11,TPR_16,TPR_2,TPR_8,Trypsin_2 QTD2_k127_3338506_3 1254432.SCE1572_47310 2.794e-103 346.0 COG1475@1|root,COG1475@2|Bacteria,1Q2AH@1224|Proteobacteria,437X8@68525|delta/epsilon subdivisions,2X9QN@28221|Deltaproteobacteria,2YUMN@29|Myxococcales 28221|Deltaproteobacteria K ParB-like nuclease domain - - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc QTD2_k127_3338506_6 330214.NIDE0156 3.053e-62 215.0 COG2154@1|root,COG2154@2|Bacteria 2|Bacteria H pterin-4-alpha-carbinolamine dehydratase phhB GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 ko:K01724 ko00790,map00790 - R04734 RC01208 ko00000,ko00001,ko01000,ko04147 - - - Pterin_4a QTD2_k127_3338506_0 330214.NIDE0158 0.0 1095.0 COG1032@1|root,COG1032@2|Bacteria 2|Bacteria C radical SAM domain protein - - - - - - - - - - - - B12-binding,Radical_SAM QTD2_k127_3338506_7 330214.NIDE0159 1.162e-57 204.0 COG0599@1|root,COG0599@2|Bacteria 2|Bacteria S peroxiredoxin activity yurZ - 2.3.1.12,4.1.1.44 ko:K00627,ko:K01607 ko00010,ko00020,ko00362,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00010,map00020,map00362,map00620,map01100,map01110,map01120,map01130,map01200,map01220 M00307 R00209,R02569,R03470 RC00004,RC00938,RC02742,RC02857 br01601,ko00000,ko00001,ko00002,ko01000 - - - CMD QTD2_k127_3338506_4 330214.NIDE0161 1.845e-97 325.0 COG0483@1|root,COG0483@2|Bacteria,3J0I4@40117|Nitrospirae 40117|Nitrospirae G Inositol monophosphatase family - - 3.1.3.25 ko:K01092 ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070 M00131 R01185,R01186,R01187 RC00078 ko00000,ko00001,ko00002,ko01000 - - - Inositol_P QTD2_k127_3338506_1 330214.NIDE0164 1.324e-140 453.0 COG0774@1|root,COG0774@2|Bacteria,3J0JG@40117|Nitrospirae 40117|Nitrospirae M Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis lpxC - 3.5.1.108 ko:K02535 ko00540,ko01100,map00540,map01100 M00060 R04587 RC00166,RC00300 ko00000,ko00001,ko00002,ko01000,ko01005 - - - LpxC QTD2_k127_3338506_8 330214.NIDE3970 2.422e-38 151.0 COG2972@1|root,COG2972@2|Bacteria 2|Bacteria T Histidine kinase VVA0018 - - - - - - - - - - - HATPase_c,His_kinase QTD2_k127_3338506_5 330214.NIDE0029 1.081e-72 248.0 COG2203@1|root,COG3604@1|root,COG2203@2|Bacteria,COG3604@2|Bacteria 2|Bacteria KT transcription factor binding fhlA GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - ko:K02584,ko:K12146,ko:K12266,ko:K15836,ko:K21009 ko02020,ko02025,ko05132,map02020,map02025,map05132 - - - ko00000,ko00001,ko03000 - - - GAF,GAF_2,GAF_3,HTH_8,Sigma54_activat QTD2_k127_3385874_3 330214.NIDE0519 4.535e-52 186.0 COG1131@1|root,COG1131@2|Bacteria,3J0JF@40117|Nitrospirae 40117|Nitrospirae V AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran QTD2_k127_3385874_1 330214.NIDE0520 2.101e-143 457.0 COG0842@1|root,COG0842@2|Bacteria 2|Bacteria V Transport permease protein ycf38 - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane QTD2_k127_3385874_0 330214.NIDE0521 1.394e-145 465.0 COG2912@1|root,COG2912@2|Bacteria 2|Bacteria P Transglutaminase-like superfamily - - - - - - - - - - - - TPR_9,Transglut_core2 QTD2_k127_3385874_2 330214.NIDE0522 4.379e-56 208.0 COG1234@1|root,COG1234@2|Bacteria 2|Bacteria L tRNA 3'-trailer cleavage - - - - - - - - - - - - DUF1566,Lactamase_B_2 QTD2_k127_3386795_9 330214.NIDE0773 1.135e-62 219.0 COG1680@1|root,COG1680@2|Bacteria,3J131@40117|Nitrospirae 40117|Nitrospirae V Beta-lactamase - - - - - - - - - - - - Beta-lactamase QTD2_k127_3386795_8 330214.NIDE0775 9.446e-63 224.0 COG0558@1|root,COG0558@2|Bacteria,3J183@40117|Nitrospirae 40117|Nitrospirae I CDP-alcohol phosphatidyltransferase - - 2.7.8.41 ko:K08744 ko00564,ko01100,map00564,map01100 - R02030 RC00002,RC00017 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf QTD2_k127_3386795_1 330214.NIDE0777 1.373e-214 672.0 COG1459@1|root,COG1459@2|Bacteria,3J0HZ@40117|Nitrospirae 40117|Nitrospirae U Type II secretion system (T2SS), protein F - - - ko:K02455,ko:K02653 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - T2SSF QTD2_k127_3386795_0 330214.NIDE0778 1.33e-253 792.0 COG5000@1|root,COG5000@2|Bacteria 2|Bacteria T phosphorelay sensor kinase activity pilS - 2.7.13.3 ko:K02668 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - HATPase_c,HisKA,PAS,PAS_4,PAS_9 QTD2_k127_3386795_3 1232410.KI421416_gene2592 3.277e-157 508.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,43UCF@69541|Desulfuromonadales 28221|Deltaproteobacteria T response regulator pilR - - ko:K02667 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_3386795_5 330214.NIDE0780 1.704e-97 327.0 COG1947@1|root,COG1947@2|Bacteria,3J0N1@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol ispE GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 ko:K00919 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05634 RC00002,RC01439 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N QTD2_k127_3386795_2 330214.NIDE0781 2.486e-170 539.0 COG0462@1|root,COG0462@2|Bacteria,3J0D0@40117|Nitrospirae 40117|Nitrospirae F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) prs - 2.7.6.1 ko:K00948 ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230 M00005 R01049 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - Pribosyl_synth,Pribosyltran_N QTD2_k127_3386795_4 330214.NIDE0782 2.411e-101 336.0 COG1825@1|root,COG1825@2|Bacteria,3J0NK@40117|Nitrospirae 40117|Nitrospirae J This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance ctc GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02897 ko03010,map03010 M00178 - - ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L25p,Ribosomal_TL5_C QTD2_k127_3386795_6 330214.NIDE0783 4.62e-88 294.0 COG0193@1|root,COG0193@2|Bacteria,3J0QR@40117|Nitrospirae 40117|Nitrospirae J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis pth GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 ko:K01056 - - - - ko00000,ko01000,ko03012 - - - Pept_tRNA_hydro QTD2_k127_3386795_7 443144.GM21_1475 2.599e-76 262.0 COG0012@1|root,COG0012@2|Bacteria,1MVM4@1224|Proteobacteria,42MNJ@68525|delta/epsilon subdivisions,2WIZZ@28221|Deltaproteobacteria,43T1T@69541|Desulfuromonadales 28221|Deltaproteobacteria J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner ychF - - ko:K06942 - - - - ko00000,ko03009 - - - MMR_HSR1,YchF-GTPase_C QTD2_k127_3394198_2 330214.NIDE4187 3.433e-122 396.0 COG1073@1|root,COG1073@2|Bacteria 2|Bacteria S thiolester hydrolase activity mhpC - - ko:K06889 - - - - ko00000 - - - Hydrolase_4 QTD2_k127_3394198_3 330214.NIDE4185 4.02e-109 362.0 COG2853@1|root,COG2853@2|Bacteria 2|Bacteria M Lipoprotein vacJ - - ko:K04754 - - - - ko00000 - - - MlaA QTD2_k127_3394198_0 330214.NIDE4184 2.605e-196 619.0 COG0156@1|root,COG0156@2|Bacteria,3J0XU@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide - - 2.3.1.29 ko:K00639 ko00260,map00260 - R00371 RC00004,RC00394 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 QTD2_k127_3394198_1 330214.NIDE4183 1.953e-179 571.0 COG1063@1|root,COG1063@2|Bacteria 2|Bacteria E alcohol dehydrogenase tdh - 1.1.1.103,2.7.13.3 ko:K00060,ko:K07777 ko00260,ko02020,map00260,map02020 M00478 R01465 RC00525 ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - ADH_N,ADH_zinc_N QTD2_k127_3394198_5 330214.NIDE4181 6.51e-71 252.0 COG0810@1|root,COG0810@2|Bacteria 2|Bacteria M energy transducer activity - - 2.7.13.3 ko:K03407,ko:K03832 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02022,ko02035 2.C.1.1 - - CarbopepD_reg_2,GUN4,Gram_pos_anchor,HAMP,NIT,TonB_2,TonB_C,Trypsin_2 QTD2_k127_3394198_4 330214.NIDE4180 5.222e-91 307.0 COG2353@1|root,COG2353@2|Bacteria 2|Bacteria O YceI-like domain Cj0420 - - - - - - - - - - - YceI QTD2_k127_3394198_6 1125971.ASJB01000099_gene2298 6.293e-32 126.0 COG1064@1|root,COG1064@2|Bacteria,2GNVQ@201174|Actinobacteria,4E0VQ@85010|Pseudonocardiales 201174|Actinobacteria S alcohol dehydrogenase adhA - 1.1.1.1 ko:K13953 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N QTD2_k127_3401177_1 330214.NIDE4238 6.105e-261 807.0 COG0495@1|root,COG0495@2|Bacteria,3J0F8@40117|Nitrospirae 40117|Nitrospirae J Leucyl-tRNA synthetase, Domain 2 leuS - 6.1.1.4 ko:K01869 ko00970,map00970 M00359,M00360 R03657 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Anticodon_1,tRNA-synt_1 QTD2_k127_3401177_6 330214.NIDE4239 8.746e-83 280.0 COG0500@1|root,COG2226@2|Bacteria,3J1DH@40117|Nitrospirae 40117|Nitrospirae H Methyltransferase domain - - - - - - - - - - - - - QTD2_k127_3401177_3 330214.NIDE4241 3.676e-101 334.0 COG0637@1|root,COG0637@2|Bacteria 2|Bacteria S phosphonoacetaldehyde hydrolase activity - - 3.1.3.5 ko:K20881 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - HAD_2,Hydrolase QTD2_k127_3401177_2 330214.NIDE4242 1.996e-214 675.0 COG1160@1|root,COG1160@2|Bacteria,3J0G3@40117|Nitrospirae 40117|Nitrospirae S GTPase that plays an essential role in the late steps of ribosome biogenesis engA - - ko:K03977 - - - - ko00000,ko03009 - - - KH_dom-like,MMR_HSR1 QTD2_k127_3401177_10 330214.NIDE2901 1.861e-16 87.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - - - - - - - - - - Autoind_bind,GerE QTD2_k127_3401177_4 330214.NIDE4245 3.475e-86 290.0 COG1595@1|root,COG1595@2|Bacteria,3J1A1@40117|Nitrospirae 40117|Nitrospirae K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 QTD2_k127_3401177_9 330214.NIDE4246 2.42e-25 109.0 COG5662@1|root,COG5662@2|Bacteria 2|Bacteria K AntiSigma factor - - - - - - - - - - - - zf-HC2 QTD2_k127_3401177_11 1122179.KB890421_gene2495 0.0009052 49.0 COG2133@1|root,COG3241@1|root,COG2133@2|Bacteria,COG3241@2|Bacteria,4NQ6P@976|Bacteroidetes,1IT2G@117747|Sphingobacteriia 976|Bacteroidetes C PFAM Blue (type 1) copper domain azu - - - - - - - - - - - Copper-bind QTD2_k127_3401177_8 330214.NIDE4247 6.077e-36 140.0 COG2010@1|root,COG2010@2|Bacteria,3J1AX@40117|Nitrospirae 2|Bacteria C Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K00406,ko:K12263 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrome_CBB3,SirB QTD2_k127_3401177_5 644801.Psest_2030 5.863e-84 284.0 COG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,1S1ZB@1236|Gammaproteobacteria,1Z0UK@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria O Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine aat GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.3.2.6 ko:K00684 - - R03813,R11443,R11444 RC00055,RC00064 ko00000,ko01000 - - - Leu_Phe_trans QTD2_k127_3409871_0 330214.NIDE3158 1.446e-56 206.0 COG0725@1|root,COG0725@2|Bacteria 2|Bacteria P tungstate binding - - - ko:K02020 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 3.A.1.8 - - SBP_bac_11 QTD2_k127_3409871_2 243233.MCA0178 3.451e-13 73.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RQ6V@1236|Gammaproteobacteria,1XDWC@135618|Methylococcales 135618|Methylococcales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran QTD2_k127_3409871_1 243233.MCA0178 5.09e-19 88.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RQ6V@1236|Gammaproteobacteria,1XDWC@135618|Methylococcales 135618|Methylococcales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran QTD2_k127_347637_0 1123393.KB891326_gene42 0.0 1377.0 COG3459@1|root,COG3459@2|Bacteria,1MVNX@1224|Proteobacteria,2VKDG@28216|Betaproteobacteria,1KSRI@119069|Hydrogenophilales 119069|Hydrogenophilales G Glycosyl hydrolase 36 superfamily, catalytic domain - - - - - - - - - - - - Glyco_hydro_36,Glyco_transf_36,Glycoamylase QTD2_k127_3504715_2 330214.NIDE0496 8.982e-143 469.0 COG2379@1|root,COG2379@2|Bacteria,3J16T@40117|Nitrospirae 40117|Nitrospirae H MOFRL family - - 2.7.1.165 ko:K11529 ko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01120,map01130,map01200 M00346 R08572 RC00002,RC00428 ko00000,ko00001,ko00002,ko01000 - - - DUF4147,MOFRL QTD2_k127_3504715_0 330214.NIDE0495 5.55e-165 526.0 COG0741@1|root,COG0741@2|Bacteria,3J0J4@40117|Nitrospirae 2|Bacteria M Lysin motif mltD_2 - - - - - - - - - - - LysM,SLT QTD2_k127_3504715_5 330214.NIDE0494 8.432e-110 359.0 COG1573@1|root,COG1573@2|Bacteria 2|Bacteria L deaminated base DNA N-glycosylase activity udgB GO:0003674,GO:0003824,GO:0004844,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033958,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - DUF4130,UDG QTD2_k127_3504715_4 330214.NIDE0493 7.389e-119 384.0 COG0176@1|root,COG0176@2|Bacteria,3J0YY@40117|Nitrospirae 40117|Nitrospirae F Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway - - 2.2.1.2 ko:K00616 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01827 RC00439,RC00604 ko00000,ko00001,ko00002,ko01000 - - - TAL_FSA QTD2_k127_3504715_8 330214.NIDE0491 1.449e-25 108.0 COG3350@1|root,COG3350@2|Bacteria 2|Bacteria T monooxygenase activity tmoA GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0008150,GO:0008152,GO:0009987,GO:0015049,GO:0015050,GO:0015947,GO:0016491,GO:0016705,GO:0016709,GO:0032991,GO:0043446,GO:0044237,GO:0055114,GO:0071704,GO:1902494 1.14.13.227,1.14.13.236,1.14.13.25,1.14.13.69,2.4.1.1 ko:K00688,ko:K15760,ko:K16157,ko:K16242,ko:K18223,ko:K22353,ko:K22357 ko00361,ko00362,ko00500,ko00623,ko00625,ko00640,ko00680,ko01100,ko01110,ko01120,ko01200,ko01220,ko02026,ko04217,ko04910,ko04922,ko04931,map00361,map00362,map00500,map00623,map00625,map00640,map00680,map01100,map01110,map01120,map01200,map01220,map02026,map04217,map04910,map04922,map04931 M00174,M00538,M00548 R01142,R02111,R02550,R03560,R03562,R03608,R05444,R05666,R10042,R10043,R10702,R11901 RC00046,RC00173,RC00269,RC00490,RC01383,RC03249 ko00000,ko00001,ko00002,ko01000 - GT35 - Phenol_Hydrox,YHS QTD2_k127_3504715_3 330214.NIDE0490 1.769e-135 437.0 COG0289@1|root,COG0289@2|Bacteria,3J0IJ@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate dapB - 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - - DapB_C,DapB_N QTD2_k127_3504715_1 330214.NIDE0489 3.397e-143 459.0 COG0329@1|root,COG0329@2|Bacteria,3J0CF@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) dapA - 4.3.3.7 ko:K01714 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R10147 RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS QTD2_k127_3504715_6 330214.NIDE0488 1.015e-45 166.0 COG0019@1|root,COG0019@2|Bacteria,3J0CR@40117|Nitrospirae 40117|Nitrospirae E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine lysA - 4.1.1.20 ko:K01586 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R00451 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N,Orn_DAP_Arg_deC QTD2_k127_3512776_22 330214.NIDE1528 8.051e-15 76.0 COG1716@1|root,COG1716@2|Bacteria 2|Bacteria T histone H2A K63-linked ubiquitination - - - - - - - - - - - - DUF4388,FHA,Yop-YscD_cpl QTD2_k127_3512776_21 330214.NIDE1527 3.573e-22 104.0 COG3266@1|root,COG3266@2|Bacteria 2|Bacteria GM domain, Protein - - - ko:K18491 ko04550,map04550 - - - ko00000,ko00001,ko03000 - - - DUF4157 QTD2_k127_3512776_14 330214.NIDE1525 5.014e-74 251.0 COG0432@1|root,COG0432@2|Bacteria,3J1CB@40117|Nitrospirae 40117|Nitrospirae S Uncharacterised protein family UPF0047 - - - - - - - - - - - - UPF0047 QTD2_k127_3512776_3 1125863.JAFN01000001_gene1963 2.961e-207 660.0 COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,42N8M@68525|delta/epsilon subdivisions,2WJRT@28221|Deltaproteobacteria 28221|Deltaproteobacteria F Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen nrdJ - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_lgC,Ribonuc_red_lgN,TSCPD QTD2_k127_3512776_11 330214.NIDE1522 1.917e-92 309.0 COG0637@1|root,COG0637@2|Bacteria,3J15X@40117|Nitrospirae 40117|Nitrospirae S Haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD_2 QTD2_k127_3512776_9 330214.NIDE1520 2.459e-126 410.0 COG1562@1|root,COG1562@2|Bacteria,3J17J@40117|Nitrospirae 40117|Nitrospirae I Squalene/phytoene synthase - - 2.5.1.32,2.5.1.99 ko:K02291 ko00906,ko01062,ko01100,ko01110,map00906,map01062,map01100,map01110 M00097 R02065,R04218,R07270,R10177 RC00362,RC01101,RC02869 ko00000,ko00001,ko00002,ko01000,ko01006 - - - SQS_PSY QTD2_k127_3512776_12 330214.NIDE1519 1.427e-82 291.0 COG1232@1|root,COG1232@2|Bacteria,3J1ES@40117|Nitrospirae 40117|Nitrospirae C Flavin containing amine oxidoreductase - - 1.17.8.1 ko:K21677 - - - - ko00000,ko01000 - - - Amino_oxidase QTD2_k127_3512776_23 330214.NIDE0339 4.138e-06 57.0 2989D@1|root,2ZVF0@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_3512776_10 330214.NIDE1518 1.71e-107 352.0 COG1573@1|root,COG1573@2|Bacteria,3J0MR@40117|Nitrospirae 40117|Nitrospirae L Uracil DNA glycosylase superfamily - - 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG QTD2_k127_3512776_13 522306.CAP2UW1_2076 7.396e-76 258.0 COG1881@1|root,COG1881@2|Bacteria,1N0Y4@1224|Proteobacteria,2VR39@28216|Betaproteobacteria 28216|Betaproteobacteria S PFAM PEBP family protein - - - ko:K06910 - - - - ko00000 - - - PBP QTD2_k127_3512776_5 330214.NIDE1515 1.69e-197 625.0 COG0312@1|root,COG0312@2|Bacteria,3J0P7@40117|Nitrospirae 40117|Nitrospirae S Putative modulator of DNA gyrase - - - ko:K03592 - - - - ko00000,ko01002 - - - PmbA_TldD QTD2_k127_3512776_2 330214.NIDE1514 1.357e-251 782.0 COG0312@1|root,COG0312@2|Bacteria,3J0F9@40117|Nitrospirae 40117|Nitrospirae S Putative modulator of DNA gyrase - - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD QTD2_k127_3512776_8 330214.NIDE1513 1.224e-128 416.0 COG0020@1|root,COG0020@2|Bacteria,3J0HJ@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids uppS - 2.5.1.31 ko:K00806 ko00900,ko01110,map00900,map01110 - R06447 RC00279,RC02839 ko00000,ko00001,ko01000,ko01006 - - - Prenyltransf QTD2_k127_3512776_16 330214.NIDE1512 1.721e-64 231.0 COG4589@1|root,COG4589@2|Bacteria,3J1FV@40117|Nitrospirae 40117|Nitrospirae I Cytidylyltransferase family - - 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_1 QTD2_k127_3512776_4 330214.NIDE1511 1.074e-197 621.0 COG0743@1|root,COG0743@2|Bacteria,3J0B0@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) dxr GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 ko:K00099 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05688 RC01452 ko00000,ko00001,ko00002,ko01000 - - - DXPR_C,DXP_redisom_C,DXP_reductoisom QTD2_k127_3512776_7 330214.NIDE1510 4.03e-180 574.0 COG0750@1|root,COG0750@2|Bacteria,3J0GI@40117|Nitrospirae 40117|Nitrospirae M Peptidase family M50 - - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ_2,Peptidase_M50 QTD2_k127_3512776_1 330214.NIDE1509 2.019e-279 867.0 COG0442@1|root,COG0442@2|Bacteria,3J0EY@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS proS - 6.1.1.15 ko:K01881 ko00970,map00970 M00359,M00360 R03661 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_2b,tRNA_edit QTD2_k127_3512776_0 330214.NIDE1508 0.0 1242.0 COG2203@1|root,COG2804@1|root,COG2203@2|Bacteria,COG2804@2|Bacteria,3J0XR@40117|Nitrospirae 40117|Nitrospirae NU Type II/IV secretion system protein - - - ko:K02454,ko:K02652 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - T2SSE,T2SSE_N QTD2_k127_3512776_17 330214.NIDE2529 5.506e-58 211.0 COG3267@1|root,COG3267@2|Bacteria 2|Bacteria - - gspA GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - ko:K02450 - M00331 - - ko00000,ko00002,ko02044 9.B.42 - - AAA_22,NB-ARC,PG_binding_1,TPR_10,TniB QTD2_k127_3528052_2 330214.NIDE1497 3.924e-92 305.0 COG1398@1|root,COG1398@2|Bacteria 2|Bacteria I oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water desC - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase QTD2_k127_3528052_20 1121015.N789_10945 0.0001792 48.0 COG0222@1|root,COG0222@2|Bacteria,1Q4UM@1224|Proteobacteria,1SVTC@1236|Gammaproteobacteria 1236|Gammaproteobacteria J ribosome binding - - - - - - - - - - - - Ribosomal_L12 QTD2_k127_3528052_3 330214.NIDE3921 1.727e-58 216.0 29TFP@1|root,30ENV@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Phenol_MetA_deg QTD2_k127_3528052_0 1411123.JQNH01000001_gene1256 5.155e-161 520.0 COG0477@1|root,COG0477@2|Bacteria,1NS3F@1224|Proteobacteria,2TYM3@28211|Alphaproteobacteria 28211|Alphaproteobacteria P Major facilitator superfamily - - - - - - - - - - - - Sugar_tr QTD2_k127_3528052_11 330214.NIDE0367 2.369e-31 130.0 COG1664@1|root,COG1664@2|Bacteria 2|Bacteria M Polymer-forming cytoskeletal - - - - - - - - - - - - Bactofilin,zf-HC2 QTD2_k127_3528052_9 330214.NIDE2602 5.42e-37 146.0 COG0840@1|root,COG0840@2|Bacteria 2|Bacteria NT transmembrane signaling receptor activity - - - - - - - - - - - - DUF3365 QTD2_k127_3528052_17 391735.Veis_0149 1.85e-09 63.0 COG0724@1|root,COG0724@2|Bacteria,1N6VR@1224|Proteobacteria,2VR38@28216|Betaproteobacteria,4ADY7@80864|Comamonadaceae 28216|Betaproteobacteria S PFAM RNP-1 like RNA-binding protein - - - - - - - - - - - - RRM_1 QTD2_k127_3528052_7 330214.NIDE1495 1.743e-44 164.0 COG0724@1|root,COG0724@2|Bacteria 2|Bacteria K RNA recognition motif rbpA - - - - - - - - - - - RRM_1 QTD2_k127_3528052_1 330214.NIDE1497 4.925e-139 447.0 COG1398@1|root,COG1398@2|Bacteria 2|Bacteria I oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water desC - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase QTD2_k127_3528052_19 335543.Sfum_1451 3.141e-06 53.0 2DD8H@1|root,2ZH1Z@2|Bacteria,1PBE0@1224|Proteobacteria,432B3@68525|delta/epsilon subdivisions,2WY4T@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_3528052_5 351160.RCIX2417 1.034e-47 179.0 COG0584@1|root,arCOG00701@2157|Archaea,2XXRI@28890|Euryarchaeota,2NB63@224756|Methanomicrobia 224756|Methanomicrobia C Glycerophosphoryl diester phosphodiesterase family glpQ - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - GDPD QTD2_k127_3528052_21 478749.BRYFOR_06064 0.0003256 53.0 COG4667@1|root,COG4667@2|Bacteria,1TQ9W@1239|Firmicutes,2485C@186801|Clostridia 186801|Clostridia S Phospholipase, patatin family - - - - - - - - - - - - Patatin QTD2_k127_3528052_4 109760.SPPG_07144T0 4.217e-50 193.0 COG0579@1|root,KOG2665@2759|Eukaryota,397NY@33154|Opisthokonta,3Q36B@4751|Fungi 4751|Fungi S fad dependent oxidoreductase - - - ko:K20298 - - - - ko00000,ko04131 - - - DAO QTD2_k127_3528052_13 158822.LH89_00960 6.187e-23 100.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,1RMQ4@1236|Gammaproteobacteria 1236|Gammaproteobacteria IQ COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II fadD GO:0001676,GO:0003674,GO:0003824,GO:0004467,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006635,GO:0006637,GO:0006644,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009150,GO:0009259,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009898,GO:0009987,GO:0015645,GO:0016020,GO:0016042,GO:0016054,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019395,GO:0019637,GO:0019693,GO:0019752,GO:0030258,GO:0031406,GO:0032787,GO:0033293,GO:0033865,GO:0033875,GO:0034032,GO:0034440,GO:0034641,GO:0035383,GO:0036041,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046395,GO:0046483,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070538,GO:0071704,GO:0071944,GO:0072329,GO:0072521,GO:0090407,GO:0098552,GO:0098562,GO:1901135,GO:1901360,GO:1901564,GO:1901575,GO:1901576 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - iSF_1195.SF1423,iSFxv_1172.SFxv_1611,iS_1188.S1538 AMP-binding,AMP-binding_C QTD2_k127_3535106_2 330214.NIDE2644 9.489e-174 550.0 COG0304@1|root,COG0304@2|Bacteria,3J0DH@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP - - 2.3.1.179 ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt QTD2_k127_3535106_4 330214.NIDE2643 4.327e-136 441.0 COG0795@1|root,COG0795@2|Bacteria,3J0QQ@40117|Nitrospirae 40117|Nitrospirae S Predicted permease YjgP/YjgQ family - - - ko:K11720 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ QTD2_k127_3535106_3 330214.NIDE2642 5.826e-153 491.0 COG0795@1|root,COG0795@2|Bacteria,3J0S0@40117|Nitrospirae 40117|Nitrospirae S Predicted permease YjgP/YjgQ family - - - ko:K07091 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ QTD2_k127_3535106_6 330214.NIDE2641 9.251e-36 136.0 COG1278@1|root,COG1278@2|Bacteria,3J0QZ@40117|Nitrospirae 40117|Nitrospirae K 'Cold-shock' DNA-binding domain - - - ko:K03704 - - - - ko00000,ko03000 - - - CSD QTD2_k127_3535106_1 330214.NIDE2640 4.037e-178 585.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE2640|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_3535106_5 330214.NIDE2639 5.855e-121 396.0 COG1052@1|root,COG1052@2|Bacteria,3J13M@40117|Nitrospirae 40117|Nitrospirae CH D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - 1.1.1.26 ko:K00015 ko00630,ko01100,ko01110,ko01120,map00630,map01100,map01110,map01120 - R00717,R01388 RC00031,RC00042 ko00000,ko00001,ko01000 - - - 2-Hacid_dh,2-Hacid_dh_C QTD2_k127_3535106_0 330214.NIDE2638 0.0 1400.0 COG0247@1|root,COG0277@1|root,COG0247@2|Bacteria,COG0277@2|Bacteria,3J0ZS@40117|Nitrospirae 40117|Nitrospirae C FAD linked oxidases, C-terminal domain - - 1.1.3.15 ko:K00104 ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130 - R00475 RC00042 ko00000,ko00001,ko01000 - - - CCG,FAD-oxidase_C,FAD_binding_4,Fer4_8 QTD2_k127_3535106_9 1047013.AQSP01000130_gene1873 2.491e-14 80.0 2E6BY@1|root,31ESQ@2|Bacteria,2NS0H@2323|unclassified Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_3542330_1 330214.NIDE0528 1.432e-55 199.0 COG1915@1|root,COG1915@2|Bacteria 2|Bacteria E PFAM LOR SDH bifunctional enzyme conserved region - - - - - - - - - - - - Amidinotransf,Saccharop_dh_N QTD2_k127_3542330_0 330214.NIDE0527 7.295e-139 448.0 COG0585@1|root,COG0585@2|Bacteria 2|Bacteria J pseudouridine synthase activity truD GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 ko:K06176 - - - - ko00000,ko01000,ko03016 - - - TruD QTD2_k127_3542532_0 330214.NIDE2086 4.439e-156 510.0 COG1074@1|root,COG1074@2|Bacteria,3J16M@40117|Nitrospirae 40117|Nitrospirae L PD-(D/E)XK nuclease superfamily - - - - - - - - - - - - PDDEXK_1,UvrD-helicase,UvrD_C QTD2_k127_3542532_3 330214.NIDE2087 4.583e-34 135.0 COG3063@1|root,COG3063@2|Bacteria 2|Bacteria NU photosynthesis - - - - - - - - - - - - ANAPC5,TPR_16,TPR_8 QTD2_k127_3542532_2 330214.NIDE4157 1.449e-41 156.0 COG3824@1|root,COG3824@2|Bacteria 2|Bacteria S Zincin-like metallopeptidase - - - - - - - - - - - - Zincin_1 QTD2_k127_3542532_1 330214.NIDE2088 6.728e-123 400.0 COG0682@1|root,COG0682@2|Bacteria,3J0G4@40117|Nitrospirae 40117|Nitrospirae M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins lgt - - ko:K13292 - - - - ko00000,ko01000 - - - LGT QTD2_k127_3542532_4 330214.NIDE2089 2.139e-18 87.0 COG4980@1|root,COG4980@2|Bacteria 2|Bacteria D gas vesicle protein XK27_07760 - - - - - - - - - - - YtxH QTD2_k127_3549592_9 330214.NIDE0361 2.679e-14 72.0 COG0486@1|root,COG0486@2|Bacteria,3J0JZ@40117|Nitrospirae 40117|Nitrospirae S Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 trmE - - ko:K03650 - - R08701 RC00053,RC00209,RC00870 ko00000,ko01000,ko03016 - - - MMR_HSR1,MnmE_helical,TrmE_N QTD2_k127_3549592_0 330214.NIDE0362 1.09e-300 932.0 COG0445@1|root,COG0445@2|Bacteria,3J0E9@40117|Nitrospirae 40117|Nitrospirae D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 gidA GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - ko:K03495 - - R08701 RC00053,RC00209,RC00870 ko00000,ko03016,ko03036 - - - GIDA,GIDA_assoc QTD2_k127_3549592_8 330214.NIDE0363 1.944e-40 157.0 COG0357@1|root,COG0357@2|Bacteria,3J18F@40117|Nitrospirae 40117|Nitrospirae J Specifically methylates the N7 position of a guanine in 16S rRNA gidB - 2.1.1.170 ko:K03501 - - - - ko00000,ko01000,ko03009,ko03036 - - - GidB QTD2_k127_3549592_3 330214.NIDE0364 1.089e-113 372.0 COG1192@1|root,COG1192@2|Bacteria,3J0H4@40117|Nitrospirae 40117|Nitrospirae D Cellulose biosynthesis protein BcsQ - - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 QTD2_k127_3549592_5 1298863.AUEP01000009_gene237 7.419e-60 217.0 COG1475@1|root,COG1475@2|Bacteria,2GNRN@201174|Actinobacteria,4DNPD@85009|Propionibacteriales 201174|Actinobacteria K Belongs to the ParB family parB GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005694,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0060187,GO:0071944 - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc QTD2_k127_3549592_6 330214.NIDE0366 1.122e-49 181.0 COG1664@1|root,COG1664@2|Bacteria,3J1F5@40117|Nitrospirae 40117|Nitrospirae M Polymer-forming cytoskeletal - - - - - - - - - - - - Bactofilin QTD2_k127_3549592_7 330214.NIDE0367 8.043e-43 160.0 COG1664@1|root,COG1664@2|Bacteria 2|Bacteria M Polymer-forming cytoskeletal - - - - - - - - - - - - Bactofilin,zf-HC2 QTD2_k127_3549592_1 330214.NIDE0368 3.072e-162 519.0 COG0482@1|root,COG0482@2|Bacteria,3J0KT@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 - - 2.8.1.13 ko:K00566 ko04122,map04122 - R08700 RC02313,RC02315 ko00000,ko00001,ko01000,ko03016 - - - tRNA_Me_trans QTD2_k127_3549592_4 330214.NIDE0369 3.024e-66 231.0 COG0712@1|root,COG0712@2|Bacteria,3J1BY@40117|Nitrospirae 40117|Nitrospirae C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpH - - ko:K02113 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - OSCP QTD2_k127_3549592_2 330214.NIDE0370 5.039e-155 498.0 COG0056@1|root,COG0056@2|Bacteria,3J0CZ@40117|Nitrospirae 40117|Nitrospirae C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit atpA - 3.6.3.14 ko:K02111 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N QTD2_k127_3554098_3 330214.NIDE0346 1.22e-109 364.0 COG3016@1|root,COG3016@2|Bacteria 2|Bacteria S Haem-binding uptake, Tiki superfamily, ChaN phuW - - - - - - - - - - - Cofac_haem_bdg,PDZ_2 QTD2_k127_3554098_1 330214.NIDE0344 2.658e-157 502.0 COG0714@1|root,COG0714@2|Bacteria,3J0WQ@40117|Nitrospirae 40117|Nitrospirae S ATPase family associated with various cellular activities (AAA) - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 QTD2_k127_3554098_4 330214.NIDE0343 2.572e-94 323.0 COG1721@1|root,COG1721@2|Bacteria 2|Bacteria E protein (some members contain a von Willebrand factor type A (vWA) domain - - - - - - - - - - - - DUF58 QTD2_k127_3554098_0 330214.NIDE0342 1.889e-202 653.0 COG1305@1|root,COG1305@2|Bacteria,3J150@40117|Nitrospirae 40117|Nitrospirae E Transglutaminase/protease-like homologues - - - - - - - - - - - - DUF3488,Transglut_core QTD2_k127_3569276_1 269799.Gmet_2549 1.763e-111 373.0 COG1812@1|root,COG1812@2|Bacteria,1QPB9@1224|Proteobacteria,42YHC@68525|delta/epsilon subdivisions,2WTU3@28221|Deltaproteobacteria,43UEK@69541|Desulfuromonadales 28221|Deltaproteobacteria H S-adenosylmethionine synthetase (AdoMet synthetase) metK-2 - 2.5.1.6 ko:K00789 ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230 M00034,M00035,M00368,M00609 R00177,R04771 RC00021,RC01211 ko00000,ko00001,ko00002,ko01000 - - - AdoMet_Synthase QTD2_k127_3569276_2 1499967.BAYZ01000123_gene2554 1.959e-91 311.0 COG0309@1|root,COG0309@2|Bacteria 2|Bacteria O Hydrogenase expression formation protein (HypE) hypE - - ko:K04655 - - - - ko00000 - - - AIRS,AIRS_C QTD2_k127_3569276_3 1283300.ATXB01000001_gene820 1.137e-78 271.0 COG1352@1|root,COG1352@2|Bacteria,1RDBE@1224|Proteobacteria,1SJIV@1236|Gammaproteobacteria 1236|Gammaproteobacteria NT Methyltransferase, chemotaxis proteins - - 2.1.1.80 ko:K00575 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko01000,ko02035 - - - CheR QTD2_k127_3569276_4 555779.Dthio_PD3063 2.87e-43 164.0 COG1618@1|root,COG1618@2|Bacteria,1N4XQ@1224|Proteobacteria,430FS@68525|delta/epsilon subdivisions,2WW2Y@28221|Deltaproteobacteria 28221|Deltaproteobacteria F NTPase - - - - - - - - - - - - NTPase_1 QTD2_k127_3569276_5 452637.Oter_4103 1.553e-25 110.0 COG0346@1|root,COG0346@2|Bacteria,46T5V@74201|Verrucomicrobia,3K8BB@414999|Opitutae 414999|Opitutae E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase QTD2_k127_3569276_0 330214.NIDE3826 0.0 2318.0 COG1924@1|root,COG3580@1|root,COG3581@1|root,COG1924@2|Bacteria,COG3580@2|Bacteria,COG3581@2|Bacteria,3J0XX@40117|Nitrospirae 40117|Nitrospirae I CoA enzyme activase uncharacterised domain (DUF2229) - - - - - - - - - - - - BcrAD_BadFG,DUF2229 QTD2_k127_3575916_0 330214.NIDE0352 0.0 1084.0 COG0308@1|root,COG0308@2|Bacteria,3J0Y4@40117|Nitrospirae 40117|Nitrospirae E Peptidase family M1 domain - - - ko:K08776 - - - - ko00000,ko01000,ko01002 - - - ERAP1_C,Peptidase_M1 QTD2_k127_3575916_1 330214.NIDE0353 4.267e-99 329.0 COG0120@1|root,COG0120@2|Bacteria 2|Bacteria G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate rpiA GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 2.7.1.12,2.7.1.15,5.3.1.6 ko:K00851,ko:K00852,ko:K01807 ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167,M00580 R01051,R01056,R01737,R02750 RC00002,RC00017,RC00434 ko00000,ko00001,ko00002,ko01000 - - - Rib_5-P_isom_A QTD2_k127_3575916_2 330214.NIDE0354 2.775e-90 299.0 COG0837@1|root,COG0837@2|Bacteria,3J13D@40117|Nitrospirae 40117|Nitrospirae F Glucokinase glk - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Glucokinase QTD2_k127_3591587_0 330214.NIDE0357 2.13e-94 316.0 COG3034@1|root,COG3034@2|Bacteria,3J19Y@40117|Nitrospirae 40117|Nitrospirae S L,D-transpeptidase catalytic domain - - - - - - - - - - - - YkuD QTD2_k127_3591587_1 518766.Rmar_0611 4.411e-44 168.0 COG1376@1|root,COG1376@2|Bacteria,4P35B@976|Bacteroidetes 976|Bacteroidetes S L,D-transpeptidase catalytic domain - - - - - - - - - - - - YkuD QTD2_k127_3602608_4 296591.Bpro_3196 7.049e-32 125.0 COG3335@1|root,COG3335@2|Bacteria,1MW7X@1224|Proteobacteria,2VMDX@28216|Betaproteobacteria,4ADVR@80864|Comamonadaceae 28216|Betaproteobacteria L Winged helix-turn helix - - - - - - - - - - - - DDE_3,HTH_32 QTD2_k127_3602608_1 330214.NIDE3604 6.837e-163 519.0 COG0435@1|root,COG0435@2|Bacteria 2|Bacteria O Glutathione S-transferase yqjG GO:0003674,GO:0003824,GO:0004364,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016672,GO:0016740,GO:0016765,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.8.5.7,2.5.1.18 ko:K00799,ko:K07393 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - iECW_1372.ECW_m3373,iWFL_1372.ECW_m3373 GST_C_2,GST_N_2 QTD2_k127_3602608_0 330214.NIDE3182 7.43e-193 609.0 COG0205@1|root,COG0205@2|Bacteria,3J0Y1@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions - - 2.7.1.11,2.7.1.90 ko:K21071 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130 - R00756,R00764,R02073,R03236,R04779 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PFK QTD2_k127_3602608_3 330214.NIDE3757 6.779e-86 289.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - - - - - - - - - - Usp QTD2_k127_3621835_0 330214.NIDE0534 1.336e-148 481.0 COG1641@1|root,COG1641@2|Bacteria 2|Bacteria H Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes larC - 4.99.1.12 ko:K09121 - - - - ko00000,ko01000 - - - DUF111 QTD2_k127_3621835_1 330214.NIDE0535 6.442e-148 476.0 COG0530@1|root,COG0530@2|Bacteria,3J0V1@40117|Nitrospirae 40117|Nitrospirae P Sodium/calcium exchanger protein - - - ko:K07301 - - - - ko00000,ko02000 2.A.19.5 - - Na_Ca_ex QTD2_k127_3621835_2 330214.NIDE0536 8.44e-146 473.0 COG1995@1|root,COG1995@2|Bacteria,3J0GF@40117|Nitrospirae 40117|Nitrospirae C Pyridoxal phosphate biosynthetic protein PdxA pdxA - 1.1.1.262,1.1.1.408,1.1.1.409 ko:K00097,ko:K22024 ko00750,ko01100,map00750,map01100 M00124 R05681,R05837,R07406 RC00089,RC00675,RC01475 ko00000,ko00001,ko00002,ko01000 - - - PdxA QTD2_k127_3621835_3 330214.NIDE0538 3.848e-80 274.0 COG0030@1|root,COG0030@2|Bacteria,3J0R6@40117|Nitrospirae 40117|Nitrospirae J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits ksgA - 2.1.1.182 ko:K02528 - - R10716 RC00003,RC03257 ko00000,ko01000,ko03009 - - - RrnaAD QTD2_k127_3621835_4 330214.NIDE0539 5.18e-66 232.0 COG1674@1|root,COG1674@2|Bacteria,3J0BQ@40117|Nitrospirae 40117|Nitrospirae D Ftsk_gamma ftsK - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma QTD2_k127_3681591_1 330214.NIDE3035 4.916e-67 234.0 COG2121@1|root,COG2121@2|Bacteria,3J1AI@40117|Nitrospirae 40117|Nitrospirae S Domain of unknown function (DUF374) - - - ko:K09778 - - - - ko00000 - - - DUF374 QTD2_k127_3681591_0 330214.NIDE3033 3.817e-130 424.0 COG1519@1|root,COG1519@2|Bacteria,3J0J7@40117|Nitrospirae 40117|Nitrospirae M 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) - - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 ko:K02527 ko00540,ko01100,map00540,map01100 M00060,M00080 R04658,R05074,R09763 RC00009,RC00077,RC00247 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT30 - Glycos_transf_N QTD2_k127_3782496_0 330214.NIDE2807 1.488e-263 815.0 COG0469@1|root,COG0469@2|Bacteria,3J0XM@40117|Nitrospirae 2|Bacteria G Belongs to the pyruvate kinase family pykF - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C QTD2_k127_3782496_2 945713.IALB_1030 7.851e-59 213.0 COG0363@1|root,COG0363@2|Bacteria 2|Bacteria G glucosamine-6-phosphate deaminase activity nagB - 3.1.1.31,3.5.99.6 ko:K01057,ko:K02564 ko00030,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00520,map01100,map01110,map01120,map01130,map01200 M00004,M00006,M00008 R00765,R02035 RC00163,RC00537 ko00000,ko00001,ko00002,ko01000 - - - Glucosamine_iso QTD2_k127_3782496_1 748247.AZKH_p0637 1.132e-93 311.0 COG0500@1|root,COG0500@2|Bacteria,1RAE4@1224|Proteobacteria,2VTM1@28216|Betaproteobacteria 28216|Betaproteobacteria J Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family - - 2.1.1.67 ko:K00569 ko00983,map00983 - R08236,R08239,R08246 RC00003,RC00980,RC02277 ko00000,ko00001,ko01000 - - - TPMT QTD2_k127_3782496_7 316055.RPE_3364 7.307e-16 77.0 2E48M@1|root,32Z4G@2|Bacteria,1N6NZ@1224|Proteobacteria,2UH8Q@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - MA20_36460 - - - - - - - - - - - - QTD2_k127_3782496_6 485913.Krac_8547 3.253e-16 81.0 2E3KN@1|root,32YIY@2|Bacteria 2|Bacteria S Protein of unknown function (DUF2630) - - - - - - - - - - - - DUF2630 QTD2_k127_3782496_4 1056820.KB900663_gene3779 1.435e-17 89.0 COG0526@1|root,COG0526@2|Bacteria,1MZ36@1224|Proteobacteria,1S8UU@1236|Gammaproteobacteria,2PNJB@256005|Alteromonadales genera incertae sedis 1236|Gammaproteobacteria CO Thioredoxin-like resA - - - - - - - - - - - AhpC-TSA,Redoxin QTD2_k127_3785578_2 330214.NIDE4172 6.244e-113 367.0 COG0451@1|root,COG0451@2|Bacteria,3J0ZC@40117|Nitrospirae 40117|Nitrospirae M Male sterility protein - - 5.1.3.6 ko:K08679 ko00520,ko01100,map00520,map01100 - R01385 RC00289 ko00000,ko00001,ko01000 - - - GDP_Man_Dehyd QTD2_k127_3785578_0 330214.NIDE4173 6.538e-267 831.0 COG2220@1|root,COG2220@2|Bacteria 2|Bacteria S N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - - - - - - - - - - Lactamase_B_2,Lactamase_B_3 QTD2_k127_3785578_4 330214.NIDE4174 1.254e-64 225.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - - - - - - - - - - - Glyoxalase QTD2_k127_3785578_1 330214.NIDE4175 1.943e-148 473.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - FGE-sulfatase QTD2_k127_3785578_6 1123248.KB893385_gene4860 8.398e-06 58.0 2CCSR@1|root,32RWC@2|Bacteria,4NUMI@976|Bacteroidetes,1ITWM@117747|Sphingobacteriia 976|Bacteroidetes S 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP QTD2_k127_3785578_3 330214.NIDE4176 1.07e-104 354.0 COG1587@1|root,COG1587@2|Bacteria 2|Bacteria H uroporphyrinogen-III synthase activity hemD - 2.1.1.107,4.2.1.75 ko:K01719,ko:K13542 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03165,R03194 RC00003,RC00871,RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4,Trans_reg_C QTD2_k127_3785578_5 330214.NIDE4178 3.527e-60 209.0 COG1262@1|root,COG1262@2|Bacteria 2|Bacteria T PFAM Formylglycine-generating sulfatase enzyme - - - - - - - - - - - - FGE-sulfatase QTD2_k127_3787936_3 330214.NIDE3390 4.575e-114 370.0 COG0667@1|root,COG0667@2|Bacteria,3J154@40117|Nitrospirae 40117|Nitrospirae C Aldo/keto reductase family - - - - - - - - - - - - Aldo_ket_red QTD2_k127_3787936_11 330214.NIDE3050 3.939e-06 56.0 COG2202@1|root,COG3829@1|root,COG4251@1|root,COG2202@2|Bacteria,COG3829@2|Bacteria,COG4251@2|Bacteria 2|Bacteria T photoreceptor activity - - 3.1.3.3 ko:K07315 - - - - ko00000,ko01000,ko03021 - - - GAF,GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9 QTD2_k127_3787936_10 1095743.HMPREF1054_1408 7.819e-08 61.0 COG1396@1|root,COG1396@2|Bacteria,1NGM7@1224|Proteobacteria 1224|Proteobacteria K PFAM helix-turn-helix domain protein ahdIC - - - - - - - - - - - HTH_3 QTD2_k127_3787936_5 330214.NIDE2082 4.222e-81 276.0 COG0791@1|root,COG0791@2|Bacteria 2|Bacteria M cysteine-type peptidase activity - - - - - - - - - - - - Amidase_5,CHAP,NLPC_P60 QTD2_k127_3787936_2 330214.NIDE3373 7.018e-134 433.0 COG1262@1|root,COG1262@2|Bacteria 2|Bacteria T PFAM Formylglycine-generating sulfatase enzyme - - - ko:K20333 ko02024,map02024 - - - ko00000,ko00001 - - - FGE-sulfatase,NACHT QTD2_k127_3787936_4 330214.NIDE3370 6.533e-108 352.0 COG0491@1|root,COG0491@2|Bacteria,3J0VN@40117|Nitrospirae 40117|Nitrospirae S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B QTD2_k127_3787936_7 330214.NIDE3368 1.144e-51 188.0 COG1259@1|root,COG1259@2|Bacteria 2|Bacteria K PFAM Uncharacterised ACR, COG1259 yqdE - - ko:K08999 - - - - ko00000 - - - DNase-RNase,UVR QTD2_k127_3787936_0 330214.NIDE3366 3.654e-183 578.0 COG0180@1|root,COG0180@2|Bacteria,3J0A0@40117|Nitrospirae 40117|Nitrospirae J tRNA synthetases class I (W and Y) trpS - 6.1.1.2 ko:K01867 ko00970,map00970 M00359,M00360 R03664 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_1b QTD2_k127_3787936_8 557598.LHK_02103 3.936e-50 187.0 COG1994@1|root,COG1994@2|Bacteria,1NSFF@1224|Proteobacteria,2VHAM@28216|Betaproteobacteria,2KQW6@206351|Neisseriales 206351|Neisseriales S Peptidase M50 - - - - - - - - - - - - Peptidase_M50 QTD2_k127_3787936_1 330214.NIDE3365 2.311e-135 437.0 COG0683@1|root,COG0683@2|Bacteria,3J18U@40117|Nitrospirae 40117|Nitrospirae E Periplasmic binding protein - - - - - - - - - - - - Peripla_BP_6 QTD2_k127_3792850_1 330214.NIDE4083 1.196e-49 193.0 COG0671@1|root,COG0671@2|Bacteria,3J1CX@40117|Nitrospirae 40117|Nitrospirae I PAP2 superfamily - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 QTD2_k127_3792850_0 330214.NIDE4084 4.493e-186 587.0 COG0823@1|root,COG0823@2|Bacteria 2|Bacteria U Involved in the tonB-independent uptake of proteins tolB - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PA,PD40,PDZ_2,Peptidase_M28 QTD2_k127_3792850_2 330214.NIDE4085 4.574e-30 123.0 COG0308@1|root,COG0308@2|Bacteria 2|Bacteria E peptide catabolic process - - - - - - - - - - - iAF987.Gmet_0348 Cofac_haem_bdg,PDZ_2,Peptidase_M1,Peptidase_M28 QTD2_k127_3807680_1 330214.NIDE3415 2.628e-256 799.0 COG3829@1|root,COG3920@1|root,COG3829@2|Bacteria,COG3920@2|Bacteria 2|Bacteria T Histidine kinase pdtaS - 2.7.13.3 ko:K00936 - M00839 - - ko00000,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HATPase_c_2,H_kinase_N,HisKA_2,PAS_4,PAS_9 QTD2_k127_3807680_4 330214.NIDE3414 3.448e-119 391.0 COG0784@1|root,COG3829@1|root,COG0784@2|Bacteria,COG3829@2|Bacteria 2|Bacteria T transcription factor binding - - - - - - - - - - - - HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg QTD2_k127_3807680_10 330214.NIDE1600 2.322e-13 80.0 COG3209@1|root,COG3209@2|Bacteria 2|Bacteria M self proteolysis - - - - - - - - - - - - Big_3,PT-HINT,RHS_repeat QTD2_k127_3807680_11 930169.B5T_01328 1.423e-08 65.0 COG0500@1|root,COG2226@2|Bacteria,1R6F0@1224|Proteobacteria,1RXR4@1236|Gammaproteobacteria,1XQKX@135619|Oceanospirillales 135619|Oceanospirillales Q Methionine biosynthesis protein MetW - - - - - - - - - - - - Methyltransf_11 QTD2_k127_3807680_0 330214.NIDE3406 3.862e-317 977.0 COG0129@1|root,COG0129@2|Bacteria,3J0ES@40117|Nitrospirae 40117|Nitrospirae EG Dehydratase family ilvD - 4.2.1.9 ko:K01687 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R01209,R04441,R05070 RC00468,RC01714 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD QTD2_k127_3807680_7 330214.NIDE3405 5.821e-35 137.0 COG3212@1|root,COG3212@2|Bacteria 2|Bacteria T peptidase Z012_07375 - - - - - - - - - - - PepSY QTD2_k127_3807680_6 330214.NIDE3404 1.132e-53 198.0 COG3678@1|root,COG3678@2|Bacteria 2|Bacteria NPTU ATP-independent chaperone mediated protein folding - - - - - - - - - - - - LTXXQ,Metal_resist QTD2_k127_3807680_5 330214.NIDE3403 4.474e-90 301.0 COG2095@1|root,COG2095@2|Bacteria,3J0UZ@40117|Nitrospirae 40117|Nitrospirae U MarC family integral membrane protein - - - ko:K05595 - - - - ko00000,ko02000 2.A.95.1 - - MarC QTD2_k127_3807680_3 330214.NIDE3402 1.761e-137 444.0 COG0484@1|root,COG0484@2|Bacteria,3J0A7@40117|Nitrospirae 2|Bacteria O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins - - - ko:K05516 - - - - ko00000,ko03036,ko03110 - - - DnaJ,DnaJ_C QTD2_k127_3807680_2 330214.NIDE3396 4.143e-162 514.0 COG0037@1|root,COG0037@2|Bacteria,3J0JK@40117|Nitrospirae 40117|Nitrospirae H PP-loop family - - 2.8.1.15 ko:K21947 - - - - ko00000,ko01000,ko03016 - - - ATP_bind_3 QTD2_k127_3807680_8 330214.NIDE3395 6.511e-25 105.0 COG2104@1|root,COG2104@2|Bacteria 2|Bacteria H thiamine diphosphate biosynthetic process thiS - - ko:K03154 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS QTD2_k127_3807680_9 1540257.JQMW01000013_gene905 2.334e-16 80.0 COG0472@1|root,COG0472@2|Bacteria,1TP9V@1239|Firmicutes,247M7@186801|Clostridia,36F6R@31979|Clostridiaceae 186801|Clostridia M PFAM Glycosyl transferase family 4 tagO - 2.7.8.33,2.7.8.35 ko:K02851 - - R08856 RC00002 ko00000,ko01000,ko01003,ko01005 - - - Glycos_transf_4 QTD2_k127_3830295_0 1123234.AUKI01000023_gene2015 9.401e-27 121.0 COG0330@1|root,COG0330@2|Bacteria,4NFNB@976|Bacteroidetes,1HXP9@117743|Flavobacteriia 976|Bacteroidetes O Membrane protease subunits, stomatin prohibitin homologs - - - - - - - - - - - - Band_7 QTD2_k127_3835961_7 330214.NIDE1666 4.403e-61 212.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups gpgS - 2.4.1.266 ko:K13693 - - - - ko00000,ko01000,ko01003 - GT81 - - QTD2_k127_3835961_2 330214.NIDE4207 3.082e-202 638.0 COG0463@1|root,COG0463@2|Bacteria 2|Bacteria M Glycosyl transferase, family 2 - - 2.4.1.268 ko:K21349 - - - - ko00000,ko01000 - GT81 - Glycos_transf_2 QTD2_k127_3835961_5 330214.NIDE4206 1.79e-87 295.0 COG0668@1|root,COG0668@2|Bacteria 2|Bacteria M transmembrane transport cmpX - - - - - - - - - - - MS_channel,TM_helix QTD2_k127_3835961_6 330214.NIDE4204 6.581e-85 296.0 COG3769@1|root,COG3769@2|Bacteria 2|Bacteria S mannosylglycerate metabolic process mpgP GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050897 2.4.1.217,3.1.3.70 ko:K05947,ko:K07026 ko00051,map00051 - R05768,R05790 RC00005,RC00017,RC00397,RC02748 ko00000,ko00001,ko01000,ko01003 - - - Hydrolase_3 QTD2_k127_3835961_8 671143.DAMO_1531 4.225e-31 133.0 COG1877@1|root,COG1877@2|Bacteria,2NPXY@2323|unclassified Bacteria 2|Bacteria G Removes the phosphate from trehalose 6-phosphate to produce free trehalose otsB GO:0000287,GO:0003674,GO:0003824,GO:0004805,GO:0005488,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009628,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0033554,GO:0034637,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0046872,GO:0050896,GO:0051716,GO:0070413,GO:0070415,GO:0070417,GO:0071704,GO:1901576 2.4.1.15,2.4.1.347,3.1.3.12 ko:K00697,ko:K01087,ko:K16055 ko00500,ko01100,map00500,map01100 - R02737,R02778 RC00005,RC00017,RC00049,RC02748 ko00000,ko00001,ko01000,ko01003 - GT20 iE2348C_1286.E2348C_2018,iECED1_1282.ECED1_2163,iECIAI39_1322.ECIAI39_1155,iECS88_1305.ECS88_1952,iLF82_1304.LF82_1582,iNRG857_1313.NRG857_09495 Glyco_hydro_15,Glyco_transf_20,Trehalose_PPase QTD2_k127_3835961_3 330214.NIDE1892 6.407e-199 630.0 COG0380@1|root,COG0380@2|Bacteria,3J10Z@40117|Nitrospirae 40117|Nitrospirae G Glycosyltransferase family 20 - - 2.4.1.15,2.4.1.347 ko:K00697 ko00500,ko01100,map00500,map01100 - R02737 RC00005,RC00049,RC02748 ko00000,ko00001,ko01000,ko01003 - GT20 - Glyco_transf_20 QTD2_k127_3835961_4 909663.KI867151_gene3002 2.905e-143 465.0 COG0438@1|root,COG0438@2|Bacteria,1MYTB@1224|Proteobacteria,42MCA@68525|delta/epsilon subdivisions,2WJVX@28221|Deltaproteobacteria,2MQT9@213462|Syntrophobacterales 28221|Deltaproteobacteria M PFAM Glycosyl transferases group 1 - - 2.4.1.245 ko:K13057 ko00500,ko01100,map00500,map01100 - R08946,R10525,R11306 RC00005,RC00049,RC02748 ko00000,ko00001,ko01000 - GT4 - Glycos_transf_1 QTD2_k127_3835961_9 891968.Anamo_1585 5.777e-23 108.0 COG0438@1|root,COG0438@2|Bacteria,3TC5G@508458|Synergistetes 508458|Synergistetes M transferase activity, transferring glycosyl groups - - - - - - - - - - - - - QTD2_k127_3835961_1 330214.NIDE1666 8.675e-219 685.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups gpgS - 2.4.1.266 ko:K13693 - - - - ko00000,ko01000,ko01003 - GT81 - - QTD2_k127_3835961_11 589865.DaAHT2_1072 7.48e-06 52.0 COG4980@1|root,COG4980@2|Bacteria,1NB49@1224|Proteobacteria,42W0M@68525|delta/epsilon subdivisions,2WRVH@28221|Deltaproteobacteria 28221|Deltaproteobacteria S YtxH-like protein - - - - - - - - - - - - YtxH QTD2_k127_3835961_0 330214.NIDE3191 1.076e-254 800.0 COG3408@1|root,COG3408@2|Bacteria,3J0Z8@40117|Nitrospirae 40117|Nitrospirae G Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - - - - - - - - - - GDE_C,GDE_N_bis QTD2_k127_3843015_6 244582.JQAK01000005_gene77 3.583e-07 51.0 COG3547@1|root,COG3547@2|Bacteria,1MXKJ@1224|Proteobacteria,2U2G6@28211|Alphaproteobacteria 28211|Alphaproteobacteria L transposase IS116 IS110 IS902 family protein - - - ko:K07486 - - - - ko00000 - - - DEDD_Tnp_IS110,Transposase_20 QTD2_k127_3843015_5 748658.KB907321_gene819 6.901e-13 78.0 2DECC@1|root,2ZMCQ@2|Bacteria 748658.KB907321_gene819|- - - - - - - - - - - - - - - - QTD2_k127_3843015_1 330214.NIDE3753 7.881e-203 644.0 COG0745@1|root,COG4191@1|root,COG0745@2|Bacteria,COG4191@2|Bacteria,3J10H@40117|Nitrospirae 40117|Nitrospirae T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_9,Response_reg QTD2_k127_3843015_4 330214.NIDE4034 1.276e-54 193.0 COG0526@1|root,COG0526@2|Bacteria 2|Bacteria CO cell redox homeostasis bta - 1.8.1.8 ko:K03671,ko:K03672 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko01000,ko03110 - - - Thioredoxin,TraF QTD2_k127_3843015_2 330214.NIDE4033 1.247e-90 299.0 COG1225@1|root,COG1225@2|Bacteria,3J12D@40117|Nitrospirae 40117|Nitrospirae O AhpC/TSA family - - - - - - - - - - - - AhpC-TSA QTD2_k127_3843015_0 330214.NIDE4031 0.0 1020.0 COG1217@1|root,COG1217@2|Bacteria,3J10A@40117|Nitrospirae 40117|Nitrospirae T Elongation factor G C-terminus typA - - ko:K06207 - - - - ko00000 - - - EFG_C,GTP_EFTU QTD2_k127_3848332_0 1121937.AUHJ01000045_gene1233 1.237e-93 323.0 COG2801@1|root,COG2801@2|Bacteria,1MWVQ@1224|Proteobacteria,1RN12@1236|Gammaproteobacteria,468CJ@72275|Alteromonadaceae 1236|Gammaproteobacteria L Integrase core domain - - - - - - - - - - - - HTH_23,HTH_29,rve QTD2_k127_3848332_2 573065.Astex_1769 0.0009174 44.0 COG3577@1|root,COG3577@2|Bacteria 2|Bacteria S aspartic-type endopeptidase activity - - - ko:K06985 ko04112,map04112 - - - ko00000,ko00001 - - - Asp_protease_2 QTD2_k127_3848332_1 324602.Caur_0800 3.287e-22 98.0 COG1960@1|root,COG1960@2|Bacteria,2G7V8@200795|Chloroflexi,375QJ@32061|Chloroflexia 32061|Chloroflexia C PFAM acyl-CoA dehydrogenase domain protein - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M QTD2_k127_3882990_6 1203606.HMPREF1526_01644 1.689e-06 53.0 COG0265@1|root,COG0265@2|Bacteria,1TRM8@1239|Firmicutes,247M5@186801|Clostridia,36DM2@31979|Clostridiaceae 186801|Clostridia O PDZ DHR GLGF domain protein - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 QTD2_k127_3882990_1 330214.NIDE3417 7.07e-182 576.0 COG0399@1|root,COG0399@2|Bacteria,3J09X@40117|Nitrospirae 40117|Nitrospirae E Belongs to the DegT DnrJ EryC1 family - - - - - - - - - - - - DegT_DnrJ_EryC1 QTD2_k127_3882990_3 330214.NIDE3418 1.502e-135 447.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 QTD2_k127_3882990_0 330214.NIDE3419 1.457e-211 664.0 COG1232@1|root,COG1232@2|Bacteria 2|Bacteria H protoporphyrinogen oxidase activity - - 5.4.99.9 ko:K01854 ko00052,ko00520,map00052,map00520 - R00505,R09009 RC00317,RC02396 ko00000,ko00001,ko01000 - - - Amino_oxidase,Glyco_trans_1_4,NAD_binding_8 QTD2_k127_3882990_2 330214.NIDE3420 9.795e-154 493.0 COG0472@1|root,COG0472@2|Bacteria 2|Bacteria M phospho-N-acetylmuramoyl-pentapeptide-transferase activity - - 2.7.8.33,2.7.8.35 ko:K02851 - - R08856 RC00002 ko00000,ko01000,ko01003,ko01005 - - - CoA_binding_3,Glycos_transf_4 QTD2_k127_3882990_4 1457250.BBMO01000001_gene1504 1.154e-51 198.0 COG0438@1|root,arCOG01403@2157|Archaea,2XWAX@28890|Euryarchaeota,23TPP@183963|Halobacteria 183963|Halobacteria M Glycosyl transferases group 1 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 QTD2_k127_3882990_5 1121448.DGI_0140 4.128e-34 138.0 COG0500@1|root,COG2226@2|Bacteria,1QYS8@1224|Proteobacteria,43DF8@68525|delta/epsilon subdivisions,2X8M7@28221|Deltaproteobacteria,2ME6A@213115|Desulfovibrionales 28221|Deltaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - - QTD2_k127_3889447_6 330214.NIDE2812 9.161e-82 275.0 COG4191@1|root,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - DUF4041,GGDEF,HATPase_c,HisKA,Response_reg,T5orf172,dCache_1 QTD2_k127_3889447_9 1121904.ARBP01000005_gene4661 7.607e-05 53.0 COG1462@1|root,COG1462@2|Bacteria 2|Bacteria M curli production assembly transport component CsgG csgG - - - - - - - - - - - CsgG,DUF4384,PG_binding_1 QTD2_k127_3889447_8 330214.NIDE2793 1.808e-46 169.0 COG0599@1|root,COG0599@2|Bacteria 2|Bacteria S peroxiredoxin activity - - 4.1.1.44 ko:K01607 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 - R03470 RC00938 ko00000,ko00001,ko01000 - - - CMD QTD2_k127_3889447_4 330214.NIDE2794 6.949e-137 440.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - - - - - - - - - - - Methyltransf_11,Methyltransf_25,Methyltransf_31 QTD2_k127_3889447_2 330214.NIDE2795 1.383e-145 470.0 COG4977@1|root,COG4977@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - AraC_binding,Cupin_6,HTH_18 QTD2_k127_3889447_7 330214.NIDE1073 2.866e-53 189.0 COG3813@1|root,COG3813@2|Bacteria 2|Bacteria T Protein conserved in bacteria MA20_39405 - - ko:K09984 - - - - ko00000 - - - DUF1272 QTD2_k127_3889447_3 330214.NIDE2210 2.081e-137 447.0 COG2890@1|root,COG2890@2|Bacteria 2|Bacteria J protein-(glutamine-N5) methyltransferase activity - - 2.1.1.156,2.1.1.157,2.1.1.209,2.1.1.4 ko:K00543,ko:K16130,ko:K18896,ko:K18897,ko:K21515 ko00260,ko00380,ko01054,ko01100,map00260,map00380,map01054,map01100 M00037 R03130,R04905,R10060,R10061 RC00003,RC00392,RC03038,RC03040 ko00000,ko00001,ko00002,ko01000,ko01008,ko03009 - - - AMP-binding,Aminotran_1_2,AviRa,Condensation,Dimerisation2,Hen1_L,Methyltransf_12,Methyltransf_2,Methyltransf_23,Methyltransf_25,Methyltransf_31,PP-binding QTD2_k127_3889447_0 330214.NIDE2209 1.586e-179 573.0 COG0014@1|root,COG0014@2|Bacteria,3J0ET@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate proA GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 ko:K00147 ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230 M00015 R03313 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Aldedh QTD2_k127_3889447_1 330214.NIDE2208 3.954e-159 514.0 COG3202@1|root,COG3202@2|Bacteria 2|Bacteria C ATP:ADP antiporter activity - - - ko:K03301 - - - - ko00000 2.A.12 - - MFS_1,TLC QTD2_k127_3899775_4 330214.NIDE4126 4.235e-102 340.0 COG0612@1|root,COG0612@2|Bacteria,3J0GS@40117|Nitrospirae 40117|Nitrospirae S Insulinase (Peptidase family M16) - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C QTD2_k127_3899775_1 1089548.KI783301_gene703 5e-244 773.0 COG1185@1|root,COG1185@2|Bacteria,1TQDW@1239|Firmicutes,4H9Z3@91061|Bacilli,3WEI5@539002|Bacillales incertae sedis 91061|Bacilli J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction pnp GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 ko:K00962 ko00230,ko00240,ko03018,map00230,map00240,map03018 M00394 R00437,R00438,R00439,R00440 RC02795 ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 - - - KH_1,PNPase,RNase_PH,RNase_PH_C,S1 QTD2_k127_3899775_11 330214.NIDE4129 2.504e-42 156.0 COG0184@1|root,COG0184@2|Bacteria,3J0RA@40117|Nitrospirae 40117|Nitrospirae J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome rpsO GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02956 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S15 QTD2_k127_3899775_5 330214.NIDE4130 2.036e-97 328.0 COG0130@1|root,COG0130@2|Bacteria,3J0KH@40117|Nitrospirae 40117|Nitrospirae J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs truB - 5.4.99.25 ko:K03177 - - - - ko00000,ko01000,ko03016 - - - TruB-C_2,TruB_C_2,TruB_N QTD2_k127_3899775_10 330214.NIDE4131 2.121e-49 179.0 COG0858@1|root,COG0858@2|Bacteria,3J0VV@40117|Nitrospirae 40117|Nitrospirae J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA rbfA - - ko:K02834 - - - - ko00000,ko03009 - - - RBFA QTD2_k127_3899775_12 330214.NIDE4132 2.388e-37 142.0 COG1550@1|root,COG1550@2|Bacteria 2|Bacteria H Protein conserved in bacteria ylxP - - ko:K09764 - - - - ko00000 - - - DUF503 QTD2_k127_3899775_0 330214.NIDE4133 0.0 1086.0 COG0532@1|root,COG0532@2|Bacteria,3J0CC@40117|Nitrospirae 40117|Nitrospirae J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex infB - - ko:K02519 - - - - ko00000,ko03012,ko03029 - - - GTP_EFTU,IF-2,IF2_N QTD2_k127_3899775_2 330214.NIDE4134 3.324e-214 668.0 COG0195@1|root,COG0195@2|Bacteria,3J0DF@40117|Nitrospirae 40117|Nitrospirae K Participates in both transcription termination and antitermination nusA - - ko:K02600 - - - - ko00000,ko03009,ko03021 - - - KH_5,NusA_N,S1 QTD2_k127_3899775_9 330214.NIDE4135 1.433e-49 183.0 COG0779@1|root,COG0779@2|Bacteria,3J0UD@40117|Nitrospirae 40117|Nitrospirae J Required for maturation of 30S ribosomal subunits rimP GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - ko:K09748 - - - - ko00000,ko03009 - - - DUF150,DUF150_C QTD2_k127_3899775_3 330214.NIDE4136 1.283e-105 350.0 COG0115@1|root,COG0115@2|Bacteria 2|Bacteria E branched-chain-amino-acid transaminase activity dat GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 ko:K00824 ko00310,ko00330,ko00360,ko00472,ko00473,ko01100,map00310,map00330,map00360,map00472,map00473,map01100 - R01148,R01582,R02459,R02851,R02924,R05053 RC00006,RC00008,RC00025 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_4 QTD2_k127_3899775_8 330214.NIDE4138 6.903e-52 187.0 COG2146@1|root,COG2146@2|Bacteria,3J1E7@40117|Nitrospirae 40117|Nitrospirae P Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - 1.7.1.15 ko:K00363,ko:K05710 ko00360,ko00910,ko01120,ko01220,map00360,map00910,map01120,map01220 M00530,M00545 R00787,R06782,R06783 RC00098,RC00176 br01602,ko00000,ko00001,ko00002,ko01000 - - - Rieske QTD2_k127_3899775_7 330214.NIDE4139 9.923e-64 223.0 COG1430@1|root,COG1430@2|Bacteria 2|Bacteria S Uncharacterized ACR, COG1430 - - - ko:K09005 - - - - ko00000 - - - DUF192 QTD2_k127_3899775_6 330214.NIDE4140 8.689e-72 244.0 COG1145@1|root,COG1145@2|Bacteria,3J1BF@40117|Nitrospirae 40117|Nitrospirae C 4Fe-4S dicluster domain - - - - - - - - - - - - - QTD2_k127_3901058_6 330214.NIDE1294 1.413e-16 79.0 COG0050@1|root,COG0050@2|Bacteria,3J0DG@40117|Nitrospirae 40117|Nitrospirae J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis - - - ko:K02358 - - - - ko00000,ko03012,ko03029,ko04147 - - - GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3 QTD2_k127_3901058_3 330214.NIDE1295 5.725e-20 92.0 COG0267@1|root,COG0267@2|Bacteria 2|Bacteria J Belongs to the bacterial ribosomal protein bL33 family rpmG - - ko:K02913 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L33 QTD2_k127_3901058_4 330214.NIDE1298 3.111e-19 88.0 COG0690@1|root,COG0690@2|Bacteria 2|Bacteria U P-P-bond-hydrolysis-driven protein transmembrane transporter activity secE GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - ko:K03073 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - SecE QTD2_k127_3901058_1 330214.NIDE1299 4.357e-102 333.0 COG0250@1|root,COG0250@2|Bacteria,3J0JA@40117|Nitrospirae 40117|Nitrospirae K Participates in transcription elongation, termination and antitermination nusG - - ko:K02601 - - - - ko00000,ko03009,ko03021 - - - KOW,NusG QTD2_k127_3901058_2 330214.NIDE1300 1.716e-77 260.0 COG0080@1|root,COG0080@2|Bacteria,3J0K2@40117|Nitrospirae 40117|Nitrospirae J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors rplK - - ko:K02867 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L11,Ribosomal_L11_N QTD2_k127_3901058_0 330214.NIDE1301 7.664e-125 402.0 COG0081@1|root,COG0081@2|Bacteria,3J0GB@40117|Nitrospirae 40117|Nitrospirae J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release rplA - - ko:K02863 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L1 QTD2_k127_3901058_5 330214.NIDE1302 1.889e-17 81.0 COG0222@1|root,COG0244@1|root,COG0222@2|Bacteria,COG0244@2|Bacteria,3J0NQ@40117|Nitrospirae 40117|Nitrospirae J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation rplL - - ko:K02935 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L12,Ribosomal_L12_N QTD2_k127_3914565_3 765952.PUV_27300 1.046e-35 139.0 COG1253@1|root,COG1253@2|Bacteria,2JFWG@204428|Chlamydiae 204428|Chlamydiae S Domain of unknown function DUF21 - - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,DUF21 QTD2_k127_3914565_2 330214.NIDE1844 3.236e-48 177.0 COG0589@1|root,COG0589@2|Bacteria 2|Bacteria T AMP binding - - - ko:K11932 - - - - ko00000 - - - Usp QTD2_k127_3914565_0 330214.NIDE3513 1.611e-177 561.0 COG0667@1|root,COG0667@2|Bacteria 2|Bacteria C Aldo Keto reductase - - - - - - - - - - - - Aldo_ket_red QTD2_k127_3914565_1 330214.NIDE3478 6.316e-55 195.0 29IJ4@1|root,313M6@2|Bacteria 2|Bacteria S Protein of unknown function (DUF1579) - - - - - - - - - - - - DUF1579 QTD2_k127_3928140_1 330214.NIDE1763 1.575e-36 141.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system lpxC - 3.5.1.108 ko:K02535 ko00540,ko01100,map00540,map01100 M00060 R04587 RC00166,RC00300 ko00000,ko00001,ko00002,ko01000,ko01005 - - - HisKA,LpxC,PAS_3,Response_reg QTD2_k127_3928140_0 330214.NIDE3595 1.199e-215 679.0 COG0591@1|root,COG0591@2|Bacteria 2|Bacteria E symporter activity putP - - ko:K03307,ko:K14387 ko04725,ko05231,map04725,map05231 - - - ko00000,ko00001,ko02000 2.A.21,2.A.21.8 - - SSF QTD2_k127_3928140_2 330214.NIDE1516 3.463e-18 84.0 COG1881@1|root,COG1881@2|Bacteria,3J13B@40117|Nitrospirae 40117|Nitrospirae S Phosphatidylethanolamine-binding protein - - - ko:K06910 - - - - ko00000 - - - PBP QTD2_k127_4047697_1 330214.NIDE1352 7.628e-144 462.0 COG4796@1|root,COG4796@2|Bacteria,3J0Q9@40117|Nitrospirae 40117|Nitrospirae U Secretin and TonB N terminus short domain - - - ko:K02666 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - Secretin,Secretin_N QTD2_k127_4047697_2 330214.NIDE1353 1.34e-139 454.0 COG0337@1|root,COG0337@2|Bacteria,3J0GA@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) aroB - 4.2.3.4 ko:K01735 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03083 RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase QTD2_k127_4047697_0 330214.NIDE1354 1.755e-217 682.0 COG2203@1|root,COG3605@1|root,COG2203@2|Bacteria,COG3605@2|Bacteria,3J0XQ@40117|Nitrospirae 40117|Nitrospirae T ANTAR - - - - - - - - - - - - ANTAR,GAF_2 QTD2_k127_4091003_0 330214.NIDE3255 0.0 1712.0 COG0243@1|root,COG0243@2|Bacteria 2|Bacteria C molybdopterin cofactor binding ddhA GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.17.99.2,1.7.5.1,1.8.2.4 ko:K00370,ko:K10700,ko:K16964,ko:K17050 ko00642,ko00910,ko00920,ko01100,ko01120,ko01220,ko02020,map00642,map00910,map00920,map01100,map01120,map01220,map02020 M00529,M00530,M00804 R00798,R01106,R05745,R09497,R09500 RC00275,RC02555,RC02812 ko00000,ko00001,ko00002,ko01000,ko02000 5.A.3.1,5.A.3.8,5.A.3.9 - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding,TAT_signal QTD2_k127_4091013_1 330214.NIDE3236 2.429e-44 160.0 COG1140@1|root,COG1140@2|Bacteria,3J1FU@40117|Nitrospirae 2|Bacteria C Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology ddhB GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.5.1 ko:K00371,ko:K16965,ko:K17048,ko:K17051 ko00642,ko00910,ko00920,ko01100,ko01120,ko01220,ko02020,map00642,map00910,map00920,map01100,map01120,map01220,map02020 M00529,M00530,M00804 R00798,R01106,R05745,R09497,R09500 RC00275,RC02555,RC02812 ko00000,ko00001,ko00002,ko01000,ko02000 5.A.3.1,5.A.3.8,5.A.3.9 - - Fer4_11 QTD2_k127_4091013_0 330214.NIDE3255 0.0 2076.0 COG0243@1|root,COG0243@2|Bacteria 2|Bacteria C molybdopterin cofactor binding ddhA GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.17.99.2,1.7.5.1,1.8.2.4 ko:K00370,ko:K10700,ko:K16964,ko:K17050 ko00642,ko00910,ko00920,ko01100,ko01120,ko01220,ko02020,map00642,map00910,map00920,map01100,map01120,map01220,map02020 M00529,M00530,M00804 R00798,R01106,R05745,R09497,R09500 RC00275,RC02555,RC02812 ko00000,ko00001,ko00002,ko01000,ko02000 5.A.3.1,5.A.3.8,5.A.3.9 - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding,TAT_signal QTD2_k127_4102492_2 330214.NIDE4106 1.003e-32 127.0 COG0586@1|root,COG0586@2|Bacteria 2|Bacteria S FtsZ-dependent cytokinesis dedA - - - - - - - - - - - SNARE_assoc QTD2_k127_4102492_0 330214.NIDE4105 8.798e-226 707.0 COG0215@1|root,COG0215@2|Bacteria,3J0CM@40117|Nitrospirae 40117|Nitrospirae J DALR_2 cysS GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 ko:K01883 ko00970,map00970 M00359,M00360 R03650 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_2,tRNA-synt_1e,tRNA-synt_1g QTD2_k127_4102492_1 330214.NIDE4104 8.23e-95 319.0 COG0566@1|root,COG0566@2|Bacteria,3J0RH@40117|Nitrospirae 40117|Nitrospirae J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family - - 2.1.1.185 ko:K03218 - - - - ko00000,ko01000,ko03009 - - - SpoU_methylase,SpoU_sub_bind QTD2_k127_4102492_3 330214.NIDE4103 4.935e-31 123.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - ko:K03413 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - HATPase_c,HisKA,Response_reg QTD2_k127_41026_3 450851.PHZ_c1369 4.415e-94 332.0 COG0332@1|root,COG0332@2|Bacteria,1MU9N@1224|Proteobacteria,2TU94@28211|Alphaproteobacteria,2KFNZ@204458|Caulobacterales 204458|Caulobacterales I PFAM 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III - - 2.3.1.207 ko:K16872 - - - - ko00000,ko01000 - - - ACP_syn_III,ACP_syn_III_C QTD2_k127_41026_2 716544.wcw_1275 5.286e-97 334.0 COG0183@1|root,COG0183@2|Bacteria,2JFS7@204428|Chlamydiae 204428|Chlamydiae I Thiolase, C-terminal domain fadI - 2.3.1.16 ko:K00632 ko00071,ko00280,ko00281,ko00362,ko00592,ko00642,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00362,map00592,map00642,map01100,map01110,map01120,map01130,map01212 M00087,M00113 R00829,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747,R05506,R05586,R07891,R07895,R07899,R08091,R08095 RC00004,RC00326,RC00405,RC01702,RC02728,RC02898,RC02955 ko00000,ko00001,ko00002,ko01000 - - - Thiolase_C,Thiolase_N QTD2_k127_41026_1 330214.NIDE3100 1.648e-178 578.0 COG1960@1|root,COG1960@2|Bacteria,3J13U@40117|Nitrospirae 40117|Nitrospirae C Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N QTD2_k127_41026_0 330214.NIDE3116 2.071e-196 619.0 COG0183@1|root,COG0183@2|Bacteria 2|Bacteria I Belongs to the thiolase family atoB - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - iJN746.PP_2215 Thiolase_C,Thiolase_N QTD2_k127_41026_4 1173264.KI913949_gene4108 6.42e-24 108.0 COG1231@1|root,COG1231@2|Bacteria,1G3YC@1117|Cyanobacteria,1HCPQ@1150|Oscillatoriales 1117|Cyanobacteria E Flavin containing amine oxidoreductase - - 1.4.3.4 ko:K00274 ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034 M00135 R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354 RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713 ko00000,ko00001,ko00002,ko01000 - - - Amino_oxidase QTD2_k127_4130081_19 330214.NIDE3719 7.099e-21 93.0 COG1189@1|root,COG1189@2|Bacteria,3J0MD@40117|Nitrospirae 40117|Nitrospirae J FtsJ-like methyltransferase - - 2.1.1.226,2.1.1.227 ko:K06442 - - - - ko00000,ko01000,ko03009 - - - FtsJ,S4 QTD2_k127_4130081_5 330214.NIDE3718 1.879e-153 489.0 COG0451@1|root,COG0451@2|Bacteria,3J12G@40117|Nitrospirae 40117|Nitrospirae M Polysaccharide biosynthesis protein - - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase QTD2_k127_4130081_15 330214.NIDE3717 4.466e-49 177.0 COG0607@1|root,COG0607@2|Bacteria,3J17U@40117|Nitrospirae 40117|Nitrospirae P Rhodanese Homology Domain - - - - - - - - - - - - Rhodanese QTD2_k127_4130081_17 404589.Anae109_1180 2.606e-26 112.0 COG1324@1|root,COG1324@2|Bacteria,1N6TN@1224|Proteobacteria,42VE1@68525|delta/epsilon subdivisions,2WR7D@28221|Deltaproteobacteria,2Z0IS@29|Myxococcales 28221|Deltaproteobacteria P CutA1 divalent ion tolerance protein cutA - - ko:K03926 - - - - ko00000 - - - CutA1 QTD2_k127_4130081_7 330214.NIDE3714 4.26e-135 439.0 COG0739@1|root,COG0739@2|Bacteria,3J0N3@40117|Nitrospirae 40117|Nitrospirae M Peptidase family M23 - - - - - - - - - - - - Peptidase_M23 QTD2_k127_4130081_0 330214.NIDE3713 1.904e-265 827.0 COG2759@1|root,COG2759@2|Bacteria,3J0CI@40117|Nitrospirae 40117|Nitrospirae F Formate--tetrahydrofolate ligase fhs GO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.3 ko:K01938 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R00943 RC00026,RC00111 ko00000,ko00001,ko00002,ko01000 - - - FTHFS QTD2_k127_4130081_6 330214.NIDE3712 6.763e-151 481.0 COG0330@1|root,COG0330@2|Bacteria 2|Bacteria O stress-induced mitochondrial fusion hflC GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0016020,GO:0016021,GO:0016787,GO:0019538,GO:0031224,GO:0031226,GO:0031233,GO:0032991,GO:0043086,GO:0043170,GO:0044092,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0098796,GO:0140096,GO:1901564 - ko:K04087 - M00742 - - ko00000,ko00002,ko01000 - - - Band_7 QTD2_k127_4130081_2 330214.NIDE3711 2.125e-184 580.0 COG0330@1|root,COG0330@2|Bacteria 2|Bacteria O stress-induced mitochondrial fusion hflK - - ko:K04088 - M00742 - - ko00000,ko00002,ko01000 - - - Band_7 QTD2_k127_4130081_20 330214.NIDE3702 7.797e-14 73.0 COG0306@1|root,COG0306@2|Bacteria,3J1D1@40117|Nitrospirae 40117|Nitrospirae P Phosphate transporter family - - - ko:K03306 - - - - ko00000 2.A.20 - - PHO4 QTD2_k127_4130081_3 330214.NIDE3701 7.618e-177 562.0 COG0535@1|root,COG0535@2|Bacteria 2|Bacteria I radical SAM domain protein - - - - - - - - - - - - DUF3641,Fer4_12,Radical_SAM QTD2_k127_4130081_4 330214.NIDE3699 5.227e-175 556.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - 2.1.1.137 ko:K07755 - - - - ko00000,ko01000 - - - Fer4_12,Fer4_14,Methyltransf_31,Radical_SAM QTD2_k127_4130081_16 330214.NIDE3683 3.91e-38 150.0 2CNK3@1|root,32SH9@2|Bacteria 2|Bacteria S Protein of Unknown function (DUF2784) - - - - - - - - - - - - DUF2784 QTD2_k127_4130081_18 633131.TR2A62_0064 3.505e-26 115.0 COG0790@1|root,COG0790@2|Bacteria,1N6ZB@1224|Proteobacteria,2UJ1A@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Sel1-like repeats. - - - - - - - - - - - - Sel1 QTD2_k127_4130081_14 292415.Tbd_1308 3.624e-61 215.0 COG5483@1|root,COG5483@2|Bacteria,1RDGV@1224|Proteobacteria,2VRBM@28216|Betaproteobacteria 28216|Betaproteobacteria S Protein of unknown function, DUF488 - - - - - - - - - - - - DUF488 QTD2_k127_4130081_9 330214.NIDE3680 1.573e-117 385.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - - - - - - - - - - - Methyltransf_11,Methyltransf_25,Methyltransf_31,Ubie_methyltran QTD2_k127_4130081_8 330214.NIDE3661 2.958e-120 390.0 COG2905@1|root,COG2905@2|Bacteria 2|Bacteria T signal-transduction protein containing cAMP-binding and CBS domains - - 2.7.7.7 ko:K02342 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - CBS,GGDEF,PAS_9 QTD2_k127_4130081_11 368408.Tpen_0832 1.385e-94 319.0 COG0330@1|root,arCOG01915@2157|Archaea,2XPQN@28889|Crenarchaeota 28889|Crenarchaeota O PFAM band 7 protein - - - - - - - - - - - - Band_7 QTD2_k127_4130081_10 330214.NIDE3510 9.861e-96 329.0 2DT3N@1|root,33IIR@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_4130081_1 330214.NIDE3663 4.713e-207 648.0 COG0477@1|root,COG2814@2|Bacteria,3J1CK@40117|Nitrospirae 40117|Nitrospirae EGP Sugar (and other) transporter - - - ko:K08151 - M00668 - - ko00000,ko00002,ko01504,ko02000 2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75 - - MFS_1 QTD2_k127_4136349_0 330214.NIDE0860 1.364e-177 571.0 COG1196@1|root,COG1196@2|Bacteria,3J0W4@40117|Nitrospirae 40117|Nitrospirae D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N QTD2_k127_4136349_1 330214.NIDE0859 1.523e-177 559.0 COG0761@1|root,COG0761@2|Bacteria,3J0PP@40117|Nitrospirae 40117|Nitrospirae IM Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis ispH - 1.17.7.4 ko:K03527 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05884,R08210 RC01137,RC01487 ko00000,ko00001,ko00002,ko01000 - - - LYTB QTD2_k127_4136349_5 330214.NIDE0858 1.23e-111 364.0 COG0745@1|root,COG0745@2|Bacteria,3J0JU@40117|Nitrospirae 40117|Nitrospirae K Transcriptional regulatory protein, C terminal - - - ko:K07658 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C QTD2_k127_4136349_4 671143.DAMO_1128 4.769e-116 396.0 COG5002@1|root,COG5002@2|Bacteria,2NNKK@2323|unclassified Bacteria 2|Bacteria T His Kinase A (phosphoacceptor) domain phoR - 2.7.13.3 ko:K02484,ko:K07636,ko:K07768 ko02020,map02020 M00434,M00443 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,PAS,PAS_4,PAS_8,sCache_like QTD2_k127_4136349_2 330214.NIDE0856 3.423e-160 510.0 COG0306@1|root,COG0306@2|Bacteria,3J1D1@40117|Nitrospirae 40117|Nitrospirae P Phosphate transporter family - - - ko:K03306 - - - - ko00000 2.A.20 - - PHO4 QTD2_k127_4136349_6 330214.NIDE0855 5.454e-100 329.0 COG1392@1|root,COG1392@2|Bacteria 2|Bacteria P Protein of unknown function DUF47 MA20_27875 - - ko:K02039,ko:K07220 - - - - ko00000 - - - PhoU_div QTD2_k127_4136349_3 330214.NIDE0854 6.814e-124 407.0 COG0332@1|root,COG0332@2|Bacteria,3J0FW@40117|Nitrospirae 2|Bacteria I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids fabH - 2.3.1.180 ko:K00648 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00082,M00083 R10707 RC00004,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACP_syn_III,ACP_syn_III_C QTD2_k127_4136349_7 330214.NIDE0853 2.501e-52 196.0 COG4105@1|root,COG4105@2|Bacteria,3J0UU@40117|Nitrospirae 40117|Nitrospirae S Tetratricopeptide repeat - - - ko:K05807 - - - - ko00000,ko02000 1.B.33.1 - - YfiO QTD2_k127_41496_3 330214.NIDE0834 1.657e-145 462.0 COG0045@1|root,COG0045@2|Bacteria,3J185@40117|Nitrospirae 40117|Nitrospirae H ATP citrate lyase citrate-binding - - 2.3.3.8 ko:K15231 ko00020,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00720,map01100,map01110,map01120,map01130,map01200 M00173 R00352 RC00004,RC00067 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp_2,Citrate_bind QTD2_k127_41496_2 330214.NIDE0835 0.0 1173.0 COG0074@1|root,COG0372@1|root,COG0074@2|Bacteria,COG0372@2|Bacteria 2|Bacteria C Belongs to the citrate synthase family - - 2.3.3.8,6.2.1.5 ko:K01902,ko:K15230,ko:K15233 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00352,R00405,R01322,R02404 RC00004,RC00014,RC00067 ko00000,ko00001,ko00002,ko01000 - - iAF987.Gmet_0306 Citrate_synt,CoA_binding,Ligase_CoA,Succ_CoA_lig QTD2_k127_41496_0 330214.NIDE0836 0.0 1434.0 COG1048@1|root,COG1048@2|Bacteria,3J0E6@40117|Nitrospirae 40117|Nitrospirae C Aconitase C-terminal domain - - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C QTD2_k127_41496_1 330214.NIDE0837 0.0 1373.0 COG2838@1|root,COG2838@2|Bacteria 2|Bacteria C Isocitrate dehydrogenase icd - 1.1.1.42 ko:K00031 ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 M00009,M00010,M00173,M00740 R00267,R00268,R01899 RC00001,RC00084,RC00114,RC00626,RC02801 br01601,ko00000,ko00001,ko00002,ko01000 - - - IDH QTD2_k127_4222020_0 330214.NIDE2781 3.736e-107 349.0 COG1032@1|root,COG1032@2|Bacteria 2|Bacteria C radical SAM domain protein - - - - - - - - - - - - B12-binding,PqqD,Radical_SAM QTD2_k127_4222020_4 925775.XVE_4624 1.38e-26 112.0 COG2963@1|root,COG2963@2|Bacteria 2|Bacteria L transposase activity - - - ko:K07483 - - - - ko00000 - - - HTH_Tnp_1 QTD2_k127_4222020_1 580332.Slit_2338 1.774e-98 330.0 COG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,2VQF1@28216|Betaproteobacteria 28216|Betaproteobacteria L PFAM Integrase catalytic region - - - ko:K07497 - - - - ko00000 - - - HTH_21,rve QTD2_k127_4222020_2 1038869.AXAN01000048_gene4512 3.241e-43 160.0 COG1504@1|root,COG1504@2|Bacteria,1PIIB@1224|Proteobacteria,2W759@28216|Betaproteobacteria,1KDUX@119060|Burkholderiaceae 28216|Betaproteobacteria S Protein of unknown function (DUF498/DUF598) - - - - - - - - - - - - DUF498 QTD2_k127_4222020_3 330214.NIDE2807 1.502e-29 119.0 COG0469@1|root,COG0469@2|Bacteria,3J0XM@40117|Nitrospirae 2|Bacteria G Belongs to the pyruvate kinase family pykF - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C QTD2_k127_4309957_1 330214.NIDE3029 3.073e-122 401.0 COG0438@1|root,COG0438@2|Bacteria,3J129@40117|Nitrospirae 40117|Nitrospirae M Glycosyl transferase 4-like domain - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 QTD2_k127_4309957_0 330214.NIDE3031 5.659e-212 672.0 COG0241@1|root,COG0859@1|root,COG0241@2|Bacteria,COG0859@2|Bacteria,3J0PZ@40117|Nitrospirae 40117|Nitrospirae EM Glycosyltransferase family 9 (heptosyltransferase) - - - ko:K02843 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9,Hydrolase_like QTD2_k127_4309957_2 330214.NIDE3032 4.437e-108 362.0 COG1663@1|root,COG1663@2|Bacteria,3J0QN@40117|Nitrospirae 40117|Nitrospirae M Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) lpxK - 2.7.1.130 ko:K00912 ko00540,ko01100,map00540,map01100 M00060 R04657 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko01005 - - - LpxK QTD2_k127_4309957_3 330214.NIDE3033 3.235e-39 150.0 COG1519@1|root,COG1519@2|Bacteria,3J0J7@40117|Nitrospirae 40117|Nitrospirae M 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) - - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 ko:K02527 ko00540,ko01100,map00540,map01100 M00060,M00080 R04658,R05074,R09763 RC00009,RC00077,RC00247 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT30 - Glycos_transf_N QTD2_k127_4327725_11 330214.NIDE1150 1.575e-71 256.0 COG0517@1|root,COG0617@1|root,COG0618@1|root,COG0517@2|Bacteria,COG0617@2|Bacteria,COG0618@2|Bacteria,3J0NX@40117|Nitrospirae 40117|Nitrospirae J Probable RNA and SrmB- binding site of polymerase A - - 2.7.7.72 ko:K00974 ko03013,map03013 - R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016 - - - CBS,DHH,DHHA1,PolyA_pol,PolyA_pol_RNAbd QTD2_k127_4327725_22 913325.N799_13600 5.039e-06 57.0 COG1158@1|root,COG1158@2|Bacteria 2|Bacteria K DNA-templated transcription, termination - - - ko:K03698 - - - - ko00000,ko01000,ko03019 - - - DUF4167,HD,OmpA,tRNA_anti-codon QTD2_k127_4327725_8 330214.NIDE1147 1.106e-103 342.0 292MF@1|root,2ZQ5C@2|Bacteria 2|Bacteria S Protein of unknown function (DUF3047) - - - - - - - - - - - - DUF3047 QTD2_k127_4327725_0 330214.NIDE1146 9.255e-273 850.0 COG1249@1|root,COG1249@2|Bacteria,3J0IM@40117|Nitrospirae 40117|Nitrospirae C Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pyr_redox_2,Pyr_redox_dim QTD2_k127_4327725_9 330214.NIDE1145 1.625e-95 318.0 COG0398@1|root,COG0398@2|Bacteria 2|Bacteria M Pfam SNARE associated Golgi protein merA - - - - - - - - - - - Pyr_redox_2,Pyr_redox_dim,SNARE_assoc QTD2_k127_4327725_7 330214.NIDE1143 1.136e-125 406.0 COG2041@1|root,COG2041@2|Bacteria 2|Bacteria V Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide yuiH - - - - - - - - - - - Oxidored_molyb QTD2_k127_4327725_3 330214.NIDE1142 6.648e-157 503.0 COG4948@1|root,COG4948@2|Bacteria 2|Bacteria M carboxylic acid catabolic process - GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20 ko:K19802 - - R10938 RC03309 ko00000,ko01000 - - - MR_MLE_C,MR_MLE_N QTD2_k127_4327725_21 323850.Shew_1107 2.243e-09 65.0 COG4968@1|root,COG4968@2|Bacteria,1N6QE@1224|Proteobacteria,1SCBS@1236|Gammaproteobacteria,2QC3C@267890|Shewanellaceae 1236|Gammaproteobacteria NU Type IV minor pilin ComP, DNA uptake sequence receptor pilE - - ko:K02655 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - ComP_DUS,N_methyl QTD2_k127_4327725_17 330214.NIDE1139 3.328e-29 117.0 COG1670@1|root,COG1670@2|Bacteria 2|Bacteria J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - - - - - - - - - - Acetyltransf_3,DUF3565 QTD2_k127_4327725_18 1254432.SCE1572_31295 3.489e-26 111.0 COG4319@1|root,COG4319@2|Bacteria,1NKFM@1224|Proteobacteria 1224|Proteobacteria S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440,SnoaL_2,SnoaL_3 QTD2_k127_4327725_12 330214.NIDE1136 2.057e-65 228.0 COG3193@1|root,COG3193@2|Bacteria 2|Bacteria - - hbpS - - ko:K11477 - - - - ko00000 - - - Haem_degrading QTD2_k127_4327725_5 330214.NIDE1129 1.094e-140 454.0 COG4677@1|root,COG4677@2|Bacteria 2|Bacteria G pectinesterase activity - - - - - - - - - - - - Beta_helix,Lipase_GDSL_2,NosD,Pectate_lyase_3 QTD2_k127_4327725_10 330214.NIDE1128 1.118e-75 260.0 COG0237@1|root,COG0237@2|Bacteria,3J0RK@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A coaE - 2.7.1.24 ko:K00859 ko00770,ko01100,map00770,map01100 M00120 R00130 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - CoaE QTD2_k127_4327725_2 330214.NIDE1127 7.97e-160 507.0 COG0492@1|root,COG0492@2|Bacteria,3J0M0@40117|Nitrospirae 40117|Nitrospirae C Pyridine nucleotide-disulphide oxidoreductase - - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_2,Pyr_redox_3 QTD2_k127_4327725_1 330214.NIDE1125 7.569e-175 555.0 COG0301@1|root,COG0301@2|Bacteria 2|Bacteria H tRNA thio-modification thiI GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 ko:K03151 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07461 - ko00000,ko00001,ko01000,ko03016 - - iECNA114_1301.ECNA114_0400,iECO26_1355.ECO26_0455,iECSF_1327.ECSF_0383,iSDY_1059.SDY_0307 THUMP,ThiI QTD2_k127_4327725_13 330214.NIDE1124 1.509e-55 202.0 COG2867@1|root,COG2867@2|Bacteria 2|Bacteria I negative regulation of translational initiation sppD - 2.3.1.235 ko:K05554,ko:K14670,ko:K15886 ko01056,ko01057,ko01130,map01056,map01057,map01130 M00778,M00783 R06701,R09265,R09269,R10960 RC00392,RC02496,RC02546 ko00000,ko00001,ko00002,ko01000,ko01004,ko01008 - - - Polyketide_cyc,Polyketide_cyc2 QTD2_k127_4327725_20 313590.MED134_03629 4.868e-10 71.0 28IAZ@1|root,2Z8DG@2|Bacteria,4NH0A@976|Bacteroidetes,1I3JY@117743|Flavobacteriia 976|Bacteroidetes S DNA-sulfur modification-associated - - - - - - - - - - - - DndB QTD2_k127_4327725_6 330214.NIDE1121 7.891e-134 434.0 COG1600@1|root,COG1600@2|Bacteria,3J19A@40117|Nitrospirae 40117|Nitrospirae C Domain of unknown function (DUF1730) - - 1.17.99.6 ko:K18979 - - - - ko00000,ko01000,ko03016 - - - DUF1730,Fer4_16 QTD2_k127_4327725_4 330214.NIDE1120 1.25e-153 497.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - ko:K02481,ko:K07714 ko02020,map02020 M00500 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_4336807_2 649638.Trad_2627 1.164e-09 63.0 COG0457@1|root,COG0457@2|Bacteria,1WI6W@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_17 QTD2_k127_4336807_1 316067.Geob_2560 8.052e-36 153.0 COG4191@1|root,COG4191@2|Bacteria,1RI33@1224|Proteobacteria,42SUG@68525|delta/epsilon subdivisions,2WP3A@28221|Deltaproteobacteria 28221|Deltaproteobacteria T Histidine kinase - - 2.7.13.3 ko:K10125 ko02020,map02020 M00504 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA QTD2_k127_4336807_0 880072.Desac_0330 3.952e-116 390.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,2MR37@213462|Syntrophobacterales 28221|Deltaproteobacteria K two component, sigma54 specific, transcriptional regulator, Fis family - - - ko:K02481 - - - - ko00000,ko02022 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_4375783_12 330214.NIDE3201 1.256e-16 80.0 2C4PS@1|root,2ZHNK@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_4375783_0 330214.NIDE3216 0.0 1455.0 COG0178@1|root,COG0178@2|Bacteria,3J0ZV@40117|Nitrospirae 40117|Nitrospirae L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate - - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - - QTD2_k127_4375783_14 1122222.AXWR01000015_gene1161 0.0004241 52.0 COG0793@1|root,COG0793@2|Bacteria,1WMHU@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus M Peptidase family S41 - - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 QTD2_k127_4375783_6 330214.NIDE3217 6.638e-96 317.0 COG1678@1|root,COG1678@2|Bacteria 2|Bacteria K ribonucleoside-diphosphate reductase activity yqgE GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - ko:K07735 - - - - ko00000,ko03000 - - - DUF179 QTD2_k127_4375783_5 330214.NIDE3218 1.152e-126 410.0 COG0388@1|root,COG0388@2|Bacteria,3J11H@40117|Nitrospirae 40117|Nitrospirae S Carbon-nitrogen hydrolase - - - - - - - - - - - - CN_hydrolase QTD2_k127_4375783_10 1134912.AJTV01000013_gene558 1.229e-23 105.0 2DQ5D@1|root,334TW@2|Bacteria,1NI32@1224|Proteobacteria,2UMQG@28211|Alphaproteobacteria,370VT@31993|Methylocystaceae 28211|Alphaproteobacteria S Small metal-binding protein - - - - - - - - - - - - SMBP QTD2_k127_4375783_4 330214.NIDE3220 6.486e-151 481.0 COG2897@1|root,COG2897@2|Bacteria 2|Bacteria P thiosulfate sulfurtransferase activity rhdA - 2.8.1.1,2.8.1.11,2.8.1.2 ko:K01011,ko:K21028 ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122 - R01931,R03105,R03106,R07461 RC00214 ko00000,ko00001,ko01000 - - - Rhodanese QTD2_k127_4375783_2 330214.NIDE3221 1.465e-231 721.0 COG3005@1|root,COG3005@2|Bacteria 2|Bacteria C denitrification pathway - - - - - - - - - - - - - QTD2_k127_4375783_3 330214.NIDE3222 1.875e-158 505.0 COG0123@1|root,COG0123@2|Bacteria,3J0P2@40117|Nitrospirae 40117|Nitrospirae BQ Histone deacetylase domain - - - - - - - - - - - - Hist_deacetyl QTD2_k127_4375783_8 330214.NIDE3224 5.185e-49 177.0 COG3071@1|root,COG3071@2|Bacteria 2|Bacteria H HemY protein hemY GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K02498 - - - - ko00000 - - - HemY_N,TPR_2 QTD2_k127_4375783_1 330214.NIDE3226 3.643e-290 900.0 COG1164@1|root,COG1164@2|Bacteria 2|Bacteria E metalloendopeptidase activity pepF - - ko:K08602 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M3,Peptidase_M3_N QTD2_k127_4375783_11 330214.NIDE3257 3.28e-22 97.0 COG2906@1|root,COG2906@2|Bacteria 2|Bacteria P 2 iron, 2 sulfur cluster binding bfd GO:0003674,GO:0005488,GO:0048037,GO:0051536,GO:0051537,GO:0051540 - ko:K02192 - - - - ko00000 - - - Fer2_BFD QTD2_k127_4375783_7 330214.NIDE3258 7.569e-80 270.0 COG0655@1|root,COG0655@2|Bacteria,3J192@40117|Nitrospirae 40117|Nitrospirae S NADPH-dependent FMN reductase wrbA - 1.6.5.2 ko:K03809 ko00130,ko01110,map00130,map01110 - R02964,R03643,R03816 RC00819 ko00000,ko00001,ko01000 - - - FMN_red QTD2_k127_4408874_0 443143.GM18_4249 6.788e-98 333.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria,43U2Y@69541|Desulfuromonadales 28221|Deltaproteobacteria T response regulator - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_4408874_1 426117.M446_6442 3.708e-27 117.0 COG3437@1|root,COG4191@1|root,COG3437@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,1JTVS@119045|Methylobacteriaceae 28211|Alphaproteobacteria T PFAM response regulator receiver - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,Response_reg QTD2_k127_4416325_2 330214.NIDE1361 3.472e-59 205.0 COG0347@1|root,COG0347@2|Bacteria,3J0P1@40117|Nitrospirae 40117|Nitrospirae K Nitrogen regulatory protein P-II - - - ko:K04751,ko:K04752 ko02020,map02020 - - - ko00000,ko00001 - - - P-II QTD2_k127_4416325_0 330214.NIDE1362 0.0 1208.0 COG2844@1|root,COG2844@2|Bacteria 2|Bacteria O Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen glnD - 2.7.7.42,2.7.7.59,2.7.7.89 ko:K00982,ko:K00990 ko02020,map02020 - - - ko00000,ko00001,ko01000 - - - ACT,GlnD_UR_UTase,HD,NTP_transf_2 QTD2_k127_4416325_1 330214.NIDE1363 3.499e-295 907.0 COG0174@1|root,COG0174@2|Bacteria,3J0AS@40117|Nitrospirae 40117|Nitrospirae E Glutamine synthetase, catalytic domain glnA - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C,Gln-synt_N QTD2_k127_4428780_0 330214.NIDE0545 3.911e-191 623.0 COG0745@1|root,COG2202@1|root,COG3290@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG3290@2|Bacteria 2|Bacteria T protein histidine kinase activity - - 3.1.3.3 ko:K07315 - - - - ko00000,ko01000,ko03021 - - - GGDEF,HATPase_c,PAS,PAS_3,PAS_4,PAS_9,Response_reg,SpoIIE,dCache_1 QTD2_k127_4428780_1 330214.NIDE0547 5.493e-33 134.0 COG1629@1|root,COG4771@2|Bacteria 2|Bacteria P TonB-dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec QTD2_k127_4428780_2 330214.NIDE0550 5.339e-15 76.0 COG3087@1|root,COG3087@2|Bacteria 2|Bacteria D Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides - - - - - - - - - - - - DUF928,NYN QTD2_k127_4434600_1 879212.DespoDRAFT_03444 1.589e-29 132.0 COG3335@1|root,COG3335@2|Bacteria,1NAUU@1224|Proteobacteria 1224|Proteobacteria L PFAM Rhodopirellula transposase - - - - - - - - - - - - DDE_Tnp_ISAZ013 QTD2_k127_4434600_0 290317.Cpha266_0332 3.365e-54 197.0 COG3335@1|root,COG3335@2|Bacteria 2|Bacteria L DDE superfamily endonuclease - - - - - - - - - - - - DDE_Tnp_ISAZ013 QTD2_k127_4434600_3 886293.Sinac_0328 3.873e-08 55.0 COG1595@1|root,COG1595@2|Bacteria,2J0GR@203682|Planctomycetes 203682|Planctomycetes K ECF sigma factor - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 QTD2_k127_4442035_9 483219.LILAB_34465 2.239e-45 166.0 COG1089@1|root,COG1089@2|Bacteria,1MUX0@1224|Proteobacteria,42KZY@68525|delta/epsilon subdivisions,2WJ4B@28221|Deltaproteobacteria 28221|Deltaproteobacteria M Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose gmd - 4.2.1.47 ko:K01711 ko00051,ko00520,ko01100,map00051,map00520,map01100 - R00888 RC00402 ko00000,ko00001,ko01000 - - - GDP_Man_Dehyd QTD2_k127_4442035_4 247490.KSU1_D0083 3.738e-139 448.0 COG0451@1|root,COG0451@2|Bacteria,2IYBF@203682|Planctomycetes 203682|Planctomycetes GM Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction fcl - 1.1.1.271 ko:K02377 ko00051,ko00520,ko01100,map00051,map00520,map01100 - R05692 RC01014 ko00000,ko00001,ko01000 - - - Epimerase QTD2_k127_4442035_13 330214.NIDE2411 3.802e-34 138.0 COG0457@1|root,COG3267@1|root,COG0457@2|Bacteria,COG3267@2|Bacteria 2|Bacteria S peptidyl-tyrosine sulfation exeA - - ko:K02450 - M00331 - - ko00000,ko00002,ko02044 9.B.42 - - AAA_22,OmpA QTD2_k127_4442035_0 330214.NIDE2440 0.0 1599.0 COG0667@1|root,COG1331@1|root,COG0667@2|Bacteria,COG1331@2|Bacteria,3J0HX@40117|Nitrospirae 40117|Nitrospirae O Protein of unknown function, DUF255 - - - ko:K06888 - - - - ko00000 - - - Thioredox_DsbH QTD2_k127_4442035_1 330214.NIDE2442 8.696e-243 756.0 COG0281@1|root,COG0281@2|Bacteria,3J0WV@40117|Nitrospirae 40117|Nitrospirae C Malic enzyme, NAD binding domain - - 1.1.1.38 ko:K00027 ko00620,ko01200,ko02020,map00620,map01200,map02020 - R00214 RC00105 ko00000,ko00001,ko01000 - - - ACT_4,Malic_M,malic QTD2_k127_4442035_6 330214.NIDE2444 1.285e-82 280.0 COG0484@1|root,COG0484@2|Bacteria 2|Bacteria O heat shock protein binding cbpA GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363 - ko:K05516,ko:K05801,ko:K18481 - M00670 - - ko00000,ko00002,ko02000,ko03036,ko03110 3.A.1.27.4,3.A.1.27.5 - - DnaJ,DnaJ_C QTD2_k127_4442035_3 330214.NIDE2445 1.647e-159 512.0 COG0349@1|root,COG0349@2|Bacteria 2|Bacteria J Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides rnd - 3.1.13.5 ko:K03684 - - - - ko00000,ko01000,ko03016 - - - DNA_pol_A_exo1,HRDC QTD2_k127_4442035_12 1123519.PSJM300_17080 1.905e-36 155.0 COG2199@1|root,COG2199@2|Bacteria,1R80Z@1224|Proteobacteria,1RZUV@1236|Gammaproteobacteria,1Z1UG@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria T GGDEF domain yliF GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - - - - - - - - - iSBO_1134.SBO_0726 GAPES2,GGDEF QTD2_k127_4442035_10 330214.NIDE2447 3.917e-45 166.0 COG1393@1|root,COG1393@2|Bacteria 2|Bacteria P arsenate reductase (glutaredoxin) activity arsC - 1.20.4.1 ko:K00537 - - - - ko00000,ko01000 - - - ArsC,Glutaredoxin QTD2_k127_4442035_2 330214.NIDE2451 3.779e-197 619.0 COG0372@1|root,COG0372@2|Bacteria 2|Bacteria C Belongs to the citrate synthase family gltA - 2.3.3.1,2.3.3.5 ko:K01647,ko:K01659 ko00020,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00640,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00740 R00351,R00931 RC00004,RC00067,RC00406,RC02827 br01601,ko00000,ko00001,ko00002,ko01000 - - iJN678.gltA Citrate_synt QTD2_k127_4442035_7 330214.NIDE2453 1.141e-66 229.0 COG0071@1|root,COG0071@2|Bacteria,3J0TV@40117|Nitrospirae 40117|Nitrospirae O Belongs to the small heat shock protein (HSP20) family - - - ko:K13993 ko04141,map04141 - - - ko00000,ko00001,ko03110 - - - HSP20 QTD2_k127_4442035_14 1232410.KI421424_gene1819 2.204e-14 75.0 2E9MH@1|root,333U5@2|Bacteria,1NDRZ@1224|Proteobacteria,42VYW@68525|delta/epsilon subdivisions,2WR91@28221|Deltaproteobacteria,43VTK@69541|Desulfuromonadales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_4442035_5 330214.NIDE2454 5.029e-123 403.0 COG0114@1|root,COG0114@2|Bacteria,3J0FU@40117|Nitrospirae 40117|Nitrospirae C Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate fumC - 4.2.1.2 ko:K01679 ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211 M00009,M00011,M00173,M00376 R01082 RC00443 ko00000,ko00001,ko00002,ko01000 - - - FumaraseC_C,Lyase_1 QTD2_k127_4448927_0 330214.NIDE3244 1.182e-202 642.0 COG4191@1|root,COG5278@1|root,COG4191@2|Bacteria,COG5278@2|Bacteria 2|Bacteria T phosphoserine phosphatase activity fleS - 2.7.13.3 ko:K02668,ko:K07710,ko:K07711,ko:K10942 ko02020,ko02024,ko05111,map02020,map02024,map05111 M00500,M00501,M00502,M00515 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - CHASE3,GAF,HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9,Response_reg QTD2_k127_4448927_1 330214.NIDE3245 6.625e-120 389.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_4456423_5 330214.NIDE1294 1.267e-18 85.0 COG0050@1|root,COG0050@2|Bacteria,3J0DG@40117|Nitrospirae 40117|Nitrospirae J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis - - - ko:K02358 - - - - ko00000,ko03012,ko03029,ko04147 - - - GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3 QTD2_k127_4456423_6 1122971.BAME01000045_gene3896 4.18e-05 49.0 293V0@1|root,2ZRA7@2|Bacteria,4P8QC@976|Bacteroidetes,2FVS2@200643|Bacteroidia 976|Bacteroidetes - - - - - - - - - - - - - - - QTD2_k127_4456423_1 330214.NIDE1291 0.0 1055.0 COG0210@1|root,COG0210@2|Bacteria,3J0VX@40117|Nitrospirae 40117|Nitrospirae L UvrD-like helicase C-terminal domain - - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C QTD2_k127_4456423_0 330214.NIDE1289 0.0 1161.0 COG0058@1|root,COG0058@2|Bacteria,3J0W1@40117|Nitrospirae 40117|Nitrospirae G Carbohydrate phosphorylase - - 2.4.1.1 ko:K00688 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R02111 - ko00000,ko00001,ko01000 - GT35 - DUF3417,Phosphorylase QTD2_k127_4456423_2 330214.NIDE1288 2.371e-139 456.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT_2,HEAT_PBS,Metallophos,NACHT,Trypsin_2 QTD2_k127_4514788_3 330214.NIDE4176 1.375e-81 276.0 COG1587@1|root,COG1587@2|Bacteria 2|Bacteria H uroporphyrinogen-III synthase activity hemD - 2.1.1.107,4.2.1.75 ko:K01719,ko:K13542 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03165,R03194 RC00003,RC00871,RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4,Trans_reg_C QTD2_k127_4514788_0 330214.NIDE4178 3.138e-166 527.0 COG1262@1|root,COG1262@2|Bacteria 2|Bacteria T PFAM Formylglycine-generating sulfatase enzyme - - - - - - - - - - - - FGE-sulfatase QTD2_k127_4514788_2 330214.NIDE4179 1.544e-89 301.0 COG3026@1|root,COG3026@2|Bacteria 2|Bacteria T antisigma factor binding - - - ko:K03598 - - - - ko00000,ko03021 - - - DUF4412,FtsX,LolA_like,MucB_RseB,MucB_RseB_C,zf-HC2 QTD2_k127_4514788_1 880072.Desac_2441 1.607e-106 351.0 COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,42MY6@68525|delta/epsilon subdivisions,2WMDC@28221|Deltaproteobacteria,2MREJ@213462|Syntrophobacterales 28221|Deltaproteobacteria C PFAM Alcohol dehydrogenase - - 1.1.1.1 ko:K13953 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N QTD2_k127_4580573_1 330214.NIDE4263 7.915e-77 259.0 COG4237@1|root,COG4237@2|Bacteria,3J166@40117|Nitrospirae 40117|Nitrospirae C Hydrogenase 4 membrane - - - ko:K12140 - - - - ko00000,ko01000 - - - - QTD2_k127_4580573_0 351160.RCIX2384 1.465e-109 370.0 COG0651@1|root,arCOG01537@2157|Archaea,2XWXC@28890|Euryarchaeota,2NADW@224756|Methanomicrobia 224756|Methanomicrobia C plastoquinone (Complex I) - - - ko:K12141 - - - - ko00000,ko01000 - - - Proton_antipo_M QTD2_k127_4581204_0 330214.NIDE0539 1.501e-268 838.0 COG1674@1|root,COG1674@2|Bacteria,3J0BQ@40117|Nitrospirae 40117|Nitrospirae D Ftsk_gamma ftsK - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma QTD2_k127_4581204_2 330214.NIDE0540 2.671e-88 297.0 COG2834@1|root,COG2834@2|Bacteria,3J1C6@40117|Nitrospirae 40117|Nitrospirae M Outer membrane lipoprotein carrier protein LolA - - - ko:K03634 - - - - ko00000 - - - LolA QTD2_k127_4581204_1 330214.NIDE0541 9.245e-122 394.0 COG3145@1|root,COG3145@2|Bacteria 2|Bacteria L oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors - - - - - - - - - - - - 2OG-FeII_Oxy_2 QTD2_k127_4581204_3 330214.NIDE0545 5.084e-33 134.0 COG0745@1|root,COG2202@1|root,COG3290@1|root,COG0745@2|Bacteria,COG2202@2|Bacteria,COG3290@2|Bacteria 2|Bacteria T protein histidine kinase activity - - 3.1.3.3 ko:K07315 - - - - ko00000,ko01000,ko03021 - - - GGDEF,HATPase_c,PAS,PAS_3,PAS_4,PAS_9,Response_reg,SpoIIE,dCache_1 QTD2_k127_4591996_15 330214.NIDE1211 1.541e-20 93.0 COG0697@1|root,COG0697@2|Bacteria 2|Bacteria EG spore germination yedA - - - - - - - - - - - EamA QTD2_k127_4591996_12 330214.NIDE1208 1.086e-36 141.0 COG2331@1|root,COG2331@2|Bacteria 2|Bacteria P Regulatory protein, FmdB family - - - - - - - - - - - - Zn-ribbon_8 QTD2_k127_4591996_6 330214.NIDE1207 7.377e-106 353.0 COG0226@1|root,COG0226@2|Bacteria 2|Bacteria P phosphate ion binding pstS - - ko:K02040 ko02010,ko02020,ko05152,map02010,map02020,map05152 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - PBP_like_2 QTD2_k127_4591996_1 330214.NIDE1205 1.289e-269 837.0 COG0439@1|root,COG0439@2|Bacteria,3J0YP@40117|Nitrospirae 40117|Nitrospirae I Biotin carboxylase C-terminal domain - - 6.4.1.1 ko:K01959 ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230 M00173,M00620 R00344 RC00040,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,CPSase_L_D2 QTD2_k127_4591996_0 330214.NIDE1204 0.0 1024.0 COG0511@1|root,COG5016@1|root,COG0511@2|Bacteria,COG5016@2|Bacteria,3J10I@40117|Nitrospirae 40117|Nitrospirae C Conserved carboxylase domain - - 6.4.1.1 ko:K01960 ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230 M00173,M00620 R00344 RC00040,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_lipoyl,HMGL-like,PYC_OADA QTD2_k127_4591996_5 330214.NIDE1203 2.284e-110 366.0 COG0596@1|root,COG0596@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds - - 3.8.1.5 ko:K01563 ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120 - R05284,R05367,R05368,R05369,R05370,R07669,R07670 RC01317,RC01340,RC01341,RC02013 ko00000,ko00001,ko01000 - - - Abhydrolase_1,Abhydrolase_4 QTD2_k127_4591996_8 330214.NIDE1202 3.237e-91 306.0 COG2077@1|root,COG2077@2|Bacteria 2|Bacteria O thioredoxin peroxidase activity tpx - 1.11.1.15 ko:K11065 - - - - ko00000,ko01000 - - - AhpC-TSA,Redoxin QTD2_k127_4591996_2 330214.NIDE1201 3.822e-223 699.0 COG1249@1|root,COG1249@2|Bacteria,3J0IM@40117|Nitrospirae 40117|Nitrospirae C Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - 1.6.1.1,1.8.1.4 ko:K00322,ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko00760,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map00760,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00112,R00209,R01221,R01698,R03815,R07618,R08549 RC00001,RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pyr_redox_2,Pyr_redox_dim QTD2_k127_4591996_4 330214.NIDE1200 1.272e-114 376.0 COG0819@1|root,COG0819@2|Bacteria 2|Bacteria K Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway tenA GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 3.5.99.2 ko:K03707 ko00730,ko01100,map00730,map01100 - R02133,R09993 RC00224,RC00652,RC02832 ko00000,ko00001,ko01000,ko03000 - - - TENA_THI-4 QTD2_k127_4591996_3 330214.NIDE1195 9.827e-137 438.0 COG0351@1|root,COG0351@2|Bacteria,3J0RM@40117|Nitrospirae 40117|Nitrospirae H Phosphomethylpyrimidine kinase thiD - 2.7.1.49,2.7.4.7 ko:K00941 ko00730,ko01100,map00730,map01100 M00127 R03471,R04509 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Phos_pyr_kin QTD2_k127_4594608_0 330214.NIDE3527 0.0 1231.0 COG0841@1|root,COG0841@2|Bacteria,3J0XV@40117|Nitrospirae 40117|Nitrospirae V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K03296,ko:K07788,ko:K07789 ko02020,map02020 M00648 - - ko00000,ko00001,ko00002,ko02000 2.A.6.2 - - ACR_tran QTD2_k127_4594608_1 1236541.BALL01000069_gene4816 7.265e-163 521.0 COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,1S5KR@1236|Gammaproteobacteria,2QA4J@267890|Shewanellaceae 1236|Gammaproteobacteria E Belongs to the DegT DnrJ EryC1 family - GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0016051,GO:0043170,GO:0044238,GO:0071704,GO:1901576 2.6.1.109 ko:K19715 - - R11395 RC00160 ko00000,ko01000,ko01005 - - - DegT_DnrJ_EryC1 QTD2_k127_4594608_4 382464.ABSI01000010_gene3574 1.241e-80 276.0 COG1212@1|root,COG1212@2|Bacteria,46SS4@74201|Verrucomicrobia,2IU4F@203494|Verrucomicrobiae 203494|Verrucomicrobiae M Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria kdsB - 2.7.7.38 ko:K00979 ko00540,ko01100,map00540,map01100 M00063 R03351,R11396 RC00152,RC00910 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_3 QTD2_k127_4594608_2 56780.SYN_00021 1.51e-146 471.0 COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,42NQF@68525|delta/epsilon subdivisions,2WKU3@28221|Deltaproteobacteria 28221|Deltaproteobacteria C PFAM Iron-containing alcohol dehydrogenase - - 1.1.3.48 ko:K19714 - - R11394 RC03427 ko00000,ko01000,ko01005 - - - Fe-ADH QTD2_k127_4594608_3 1121405.dsmv_0519 3.894e-115 384.0 COG0859@1|root,COG0859@2|Bacteria,1MYZA@1224|Proteobacteria,43AFG@68525|delta/epsilon subdivisions,2WKA9@28221|Deltaproteobacteria,2MI8V@213118|Desulfobacterales 28221|Deltaproteobacteria M Glycosyltransferase family 9 (heptosyltransferase) - - - ko:K02841 ko00540,ko01100,map00540,map01100 M00080 - - ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT9 - Glyco_transf_9 QTD2_k127_4594608_6 96561.Dole_1433 1.106e-15 83.0 COG1519@1|root,COG1663@1|root,COG1519@2|Bacteria,COG1663@2|Bacteria,1MU9F@1224|Proteobacteria,42PCH@68525|delta/epsilon subdivisions,2WMQM@28221|Deltaproteobacteria,2MJDI@213118|Desulfobacterales 28221|Deltaproteobacteria M 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) - - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 ko:K02527 ko00540,ko01100,map00540,map01100 M00060,M00080 R04658,R05074,R09763 RC00009,RC00077,RC00247 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT30 - Glycos_transf_N QTD2_k127_4600068_0 330214.NIDE0443 3.914e-163 523.0 COG0568@1|root,COG0568@2|Bacteria,3J0E4@40117|Nitrospirae 40117|Nitrospirae K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released - - - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 QTD2_k127_4600068_2 289376.THEYE_A1475 8.625e-92 308.0 COG0330@1|root,COG0330@2|Bacteria,3J0NF@40117|Nitrospirae 40117|Nitrospirae O prohibitin homologues - - - - - - - - - - - - Band_7 QTD2_k127_4600068_1 289376.THEYE_A0592 6.85e-104 346.0 COG1030@1|root,COG1030@2|Bacteria,3J0WF@40117|Nitrospirae 40117|Nitrospirae O NfeD-like C-terminal, partner-binding - - - ko:K07403 - - - - ko00000 - - - NfeD QTD2_k127_4611066_12 1122179.KB890423_gene2364 3.678e-47 171.0 COG2303@1|root,COG2303@2|Bacteria,4NEF2@976|Bacteroidetes,1IXR8@117747|Sphingobacteriia 976|Bacteroidetes E GMC oxidoreductase - - - - - - - - - - - - FAD_binding_2,GMC_oxred_C,GMC_oxred_N,NAD_binding_8 QTD2_k127_4611066_4 861299.J421_1879 7.222e-167 538.0 COG1252@1|root,COG1252@2|Bacteria,1ZT8C@142182|Gemmatimonadetes 2|Bacteria C Pyridine nucleotide-disulphide oxidoreductase - - 1.6.99.3 ko:K03885 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyr_redox_2 QTD2_k127_4611066_6 864702.OsccyDRAFT_4592 2.098e-111 369.0 COG0346@1|root,COG0346@2|Bacteria,1G29P@1117|Cyanobacteria,1H8TZ@1150|Oscillatoriales 1117|Cyanobacteria E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase QTD2_k127_4611066_14 443152.MDG893_17567 2.852e-29 128.0 COG0398@1|root,COG0398@2|Bacteria,1RDZ2@1224|Proteobacteria,1RYPP@1236|Gammaproteobacteria 1236|Gammaproteobacteria S TVP38 TMEM64 family inner membrane protein ydjZ ydjZ GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - - - - - - - - - - SNARE_assoc QTD2_k127_4611066_13 1408473.JHXO01000004_gene191 1.829e-39 153.0 COG2606@1|root,COG2606@2|Bacteria,4P3TW@976|Bacteroidetes,2FXVH@200643|Bacteroidia 976|Bacteroidetes S Aminoacyl-tRNA editing domain - - - ko:K19055 - - - - ko00000,ko01000,ko03016 - - - tRNA_edit QTD2_k127_4611066_2 1116472.MGMO_17c00060 8.912e-219 703.0 COG3829@1|root,COG3829@2|Bacteria,1NU8B@1224|Proteobacteria,1RMHY@1236|Gammaproteobacteria,1XEIK@135618|Methylococcales 135618|Methylococcales KT PFAM RNA polymerase sigma factor 54, interaction - - - - - - - - - - - - HTH_8,PAS_4,Sigma54_activat QTD2_k127_4611066_16 1267534.KB906760_gene1563 7.717e-08 57.0 29A7N@1|root,2ZX8K@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_4611066_11 404589.Anae109_3622 6.003e-51 189.0 COG1595@1|root,COG1595@2|Bacteria,1RI7C@1224|Proteobacteria,42XJU@68525|delta/epsilon subdivisions,2WT13@28221|Deltaproteobacteria,2Z11E@29|Myxococcales 28221|Deltaproteobacteria K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 QTD2_k127_4611066_15 472759.Nhal_2951 9.727e-10 62.0 COG5660@1|root,COG5660@2|Bacteria,1NH4R@1224|Proteobacteria,1SHCR@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Transmembrane anti-sigma factor - - - - - - - - - - - - zf-HC2 QTD2_k127_4611066_1 330214.NIDE2610 3.32e-227 711.0 COG1271@1|root,COG1271@2|Bacteria,3J0HH@40117|Nitrospirae 40117|Nitrospirae C Cytochrome bd terminal oxidase subunit I - - 1.10.3.14 ko:K00425 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_I QTD2_k127_4611066_5 330214.NIDE2609 1.344e-112 374.0 COG1294@1|root,COG1294@2|Bacteria,3J0M4@40117|Nitrospirae 40117|Nitrospirae C Cytochrome bd terminal oxidase subunit II cydB - 1.10.3.14 ko:K00426 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_II QTD2_k127_4611066_3 251221.35211731 6.553e-174 552.0 COG1063@1|root,COG1063@2|Bacteria 2|Bacteria E alcohol dehydrogenase gcd - - - - - - - - - - - ADH_N,ADH_zinc_N,Glu_dehyd_C QTD2_k127_4611066_9 864069.MicloDRAFT_00013810 3.872e-89 306.0 COG4117@1|root,COG4117@2|Bacteria,1MX97@1224|Proteobacteria,2U0ZF@28211|Alphaproteobacteria,1JRBK@119045|Methylobacteriaceae 28211|Alphaproteobacteria C Prokaryotic cytochrome b561 - - - - - - - - - - - - Ni_hydr_CYTB QTD2_k127_4611066_8 864069.MicloDRAFT_00013820 3.083e-89 301.0 COG2041@1|root,COG2041@2|Bacteria,1MUW0@1224|Proteobacteria,2TS40@28211|Alphaproteobacteria,1JSRI@119045|Methylobacteriaceae 28211|Alphaproteobacteria S Oxidoreductase molybdopterin binding - - - ko:K07147 - - - - ko00000,ko01000 - - - Oxidored_molyb QTD2_k127_4611066_7 330214.NIDE3133 2.467e-108 363.0 2C8FN@1|root,2ZBER@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_4611066_10 292.DM42_5528 2.934e-52 193.0 COG0526@1|root,COG0526@2|Bacteria,1QTY9@1224|Proteobacteria,2VRG2@28216|Betaproteobacteria,1KH2K@119060|Burkholderiaceae 28216|Betaproteobacteria CO PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - - - - - - - - - - AhpC-TSA,Redoxin QTD2_k127_4611066_0 330214.NIDE1131 0.0 1583.0 COG1452@1|root,COG1452@2|Bacteria 2|Bacteria M lipopolysaccharide transport - - - ko:K22110 - - - - ko00000,ko02000 1.B.35.1,1.B.35.2 - - Glyco_hydro_63 QTD2_k127_4637149_1 330214.NIDE2742 2.034e-55 196.0 COG2905@1|root,COG2905@2|Bacteria 2|Bacteria T signal-transduction protein containing cAMP-binding and CBS domains opuCA - 2.7.7.7 ko:K02342,ko:K05847,ko:K07182 ko00230,ko00240,ko01100,ko02010,ko03030,ko03430,ko03440,map00230,map00240,map01100,map02010,map03030,map03430,map03440 M00209,M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko02000,ko03032,ko03400 3.A.1.12 - - CBS,DUF294,DUF294_C,cNMP_binding QTD2_k127_4637149_0 330214.NIDE2743 1.069e-186 594.0 COG0007@1|root,COG1587@1|root,COG0007@2|Bacteria,COG1587@2|Bacteria,3J0B6@40117|Nitrospirae 40117|Nitrospirae H Belongs to the precorrin methyltransferase family - - 2.1.1.107,4.2.1.75 ko:K13542 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03165,R03194 RC00003,RC00871,RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4,TP_methylase QTD2_k127_4641246_3 330214.NIDE2517 4.482e-139 448.0 COG0479@1|root,COG0479@2|Bacteria,3J14K@40117|Nitrospirae 40117|Nitrospirae C Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family - - 1.3.5.1,1.3.5.4 ko:K00240 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - Fer2_3,Fer4_10 QTD2_k127_4641246_1 330214.NIDE2516 2.985e-201 631.0 COG0006@1|root,COG0006@2|Bacteria,3J0R0@40117|Nitrospirae 40117|Nitrospirae E Metallopeptidase family M24 - - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - Creatinase_N,Peptidase_M24 QTD2_k127_4641246_0 330214.NIDE2515 0.0 1309.0 COG2982@1|root,COG2982@2|Bacteria 2|Bacteria M Protein involved in outer membrane biogenesis - - - ko:K07290 - - - - ko00000 9.B.121 - - AsmA,AsmA_2,DUF3971,DUF748 QTD2_k127_4641246_2 330214.NIDE2514 1.53e-170 545.0 COG2271@1|root,COG2271@2|Bacteria 2|Bacteria G transmembrane transporter activity - - - ko:K03535 - - - - ko00000,ko02000 2.A.1.14.1 - - MFS_1 QTD2_k127_4641246_4 330214.NIDE2497 5.568e-81 271.0 COG0652@1|root,COG0652@2|Bacteria,3J18H@40117|Nitrospirae 40117|Nitrospirae O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - 5.2.1.8 ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase QTD2_k127_4645503_40 330214.NIDE1294 1.413e-16 79.0 COG0050@1|root,COG0050@2|Bacteria,3J0DG@40117|Nitrospirae 40117|Nitrospirae J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis - - - ko:K02358 - - - - ko00000,ko03012,ko03029,ko04147 - - - GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3 QTD2_k127_4645503_28 330214.NIDE1310 6.103e-52 184.0 COG0051@1|root,COG0051@2|Bacteria,3J0P3@40117|Nitrospirae 40117|Nitrospirae J Involved in the binding of tRNA to the ribosomes rpsJ - - ko:K02946 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S10 QTD2_k127_4645503_10 330214.NIDE1311 1.081e-108 354.0 COG0087@1|root,COG0087@2|Bacteria,3J0HP@40117|Nitrospirae 40117|Nitrospirae J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit rplC - - ko:K02906 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L3 QTD2_k127_4645503_12 330214.NIDE1312 1.109e-90 302.0 COG0088@1|root,COG0088@2|Bacteria,3J15W@40117|Nitrospirae 40117|Nitrospirae J Ribosomal protein L4/L1 family rplD GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02926 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L4 QTD2_k127_4645503_32 330214.NIDE1313 9.289e-45 164.0 COG0089@1|root,COG0089@2|Bacteria,3J0TP@40117|Nitrospirae 40117|Nitrospirae J One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome rplW GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02892 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L23 QTD2_k127_4645503_4 330214.NIDE1314 3.221e-144 460.0 COG0090@1|root,COG0090@2|Bacteria,3J0BX@40117|Nitrospirae 40117|Nitrospirae J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity rplB GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02886 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L2,Ribosomal_L2_C QTD2_k127_4645503_25 330214.NIDE1315 8.098e-56 195.0 COG0185@1|root,COG0185@2|Bacteria,3J0MU@40117|Nitrospirae 40117|Nitrospirae J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA rpsS GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - ko:K02965 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S19 QTD2_k127_4645503_27 330214.NIDE1316 6.634e-53 190.0 COG0091@1|root,COG0091@2|Bacteria,3J0RZ@40117|Nitrospirae 40117|Nitrospirae J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome rplV - - ko:K02890 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L22 QTD2_k127_4645503_6 330214.NIDE1317 9.788e-130 415.0 COG0092@1|root,COG0092@2|Bacteria,3J0AP@40117|Nitrospirae 40117|Nitrospirae J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation rpsC GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02982 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KH_2,Ribosomal_S3_C QTD2_k127_4645503_19 330214.NIDE1318 5.976e-73 248.0 COG0197@1|root,COG0197@2|Bacteria,3J0H7@40117|Nitrospirae 40117|Nitrospirae J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs rplP GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - ko:K02878 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L16 QTD2_k127_4645503_41 330214.NIDE1319 2.011e-14 75.0 COG0255@1|root,COG0255@2|Bacteria 2|Bacteria J Belongs to the universal ribosomal protein uL29 family rpmC GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02904 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L29 QTD2_k127_4645503_36 330214.NIDE1320 2.772e-36 139.0 COG0186@1|root,COG0186@2|Bacteria,3J0TQ@40117|Nitrospirae 40117|Nitrospirae J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA rpsQ GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02961 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S17 QTD2_k127_4645503_21 330214.NIDE1321 5.607e-70 238.0 COG0093@1|root,COG0093@2|Bacteria,3J0JD@40117|Nitrospirae 40117|Nitrospirae J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome rplN GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - ko:K02874 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L14 QTD2_k127_4645503_34 330214.NIDE1322 4.036e-44 162.0 COG0198@1|root,COG0198@2|Bacteria,3J0VK@40117|Nitrospirae 40117|Nitrospirae J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit rplX - - ko:K02895 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KOW,ribosomal_L24 QTD2_k127_4645503_11 330214.NIDE1323 5.733e-100 329.0 COG0094@1|root,COG0094@2|Bacteria,3J0HN@40117|Nitrospirae 40117|Nitrospirae J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits rplE - - ko:K02931 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L5,Ribosomal_L5_C QTD2_k127_4645503_38 330214.NIDE1324 5.77e-28 113.0 COG0199@1|root,COG0199@2|Bacteria,3J1C2@40117|Nitrospirae 40117|Nitrospirae J 30S ribosomal protein S14 rpsN GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02954 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S14 QTD2_k127_4645503_29 330214.NIDE1325 1.547e-49 180.0 COG0096@1|root,COG0096@2|Bacteria,3J0SJ@40117|Nitrospirae 40117|Nitrospirae J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit rpsH GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02994 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S8 QTD2_k127_4645503_14 330214.NIDE1326 2.291e-86 288.0 COG0097@1|root,COG0097@2|Bacteria,3J0JB@40117|Nitrospirae 40117|Nitrospirae J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center rplF GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02933 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L6 QTD2_k127_4645503_31 330214.NIDE1327 1.055e-46 170.0 COG0256@1|root,COG0256@2|Bacteria,3J0QF@40117|Nitrospirae 40117|Nitrospirae J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance rplR - - ko:K02881 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L18p QTD2_k127_4645503_16 330214.NIDE1328 2.457e-83 279.0 COG0098@1|root,COG0098@2|Bacteria,3J0M3@40117|Nitrospirae 40117|Nitrospirae J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body rpsE - - ko:K02988 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S5,Ribosomal_S5_C QTD2_k127_4645503_39 330214.NIDE1329 3.166e-20 92.0 COG1841@1|root,COG1841@2|Bacteria 2|Bacteria J maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) rpmD GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02907 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L30 QTD2_k127_4645503_30 555079.Toce_0137 1.292e-48 181.0 COG0200@1|root,COG0200@2|Bacteria,1V3KE@1239|Firmicutes,24HAJ@186801|Clostridia,42G84@68295|Thermoanaerobacterales 186801|Clostridia J Binds to the 23S rRNA rplO - - ko:K02876 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27A QTD2_k127_4645503_0 330214.NIDE1331 3.835e-252 782.0 COG0201@1|root,COG0201@2|Bacteria,3J0C0@40117|Nitrospirae 40117|Nitrospirae U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently secY - - ko:K03076 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5 - - SecY QTD2_k127_4645503_15 330214.NIDE1332 1.53e-84 285.0 COG0563@1|root,COG0563@2|Bacteria,3J0K3@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism adk - 2.7.4.3 ko:K00939 ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130 M00049 R00127,R01547,R11319 RC00002 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ADK,ADK_lid QTD2_k127_4645503_8 330214.NIDE1333 4.168e-118 383.0 COG0024@1|root,COG0024@2|Bacteria,3J0GR@40117|Nitrospirae 40117|Nitrospirae J Metallopeptidase family M24 map - 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 QTD2_k127_4645503_35 1162668.LFE_0905 1.216e-36 138.0 COG0361@1|root,COG0361@2|Bacteria,3J0QB@40117|Nitrospirae 40117|Nitrospirae J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex infA - - ko:K02518 - - - - ko00000,ko03012 - - - eIF-1a QTD2_k127_4645503_42 717231.Flexsi_0487 1.909e-13 70.0 COG0257@1|root,COG0257@2|Bacteria,2GG6B@200930|Deferribacteres 200930|Deferribacteres J Belongs to the bacterial ribosomal protein bL36 family rpmJ - - ko:K02919 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L36 QTD2_k127_4645503_24 330214.NIDE1336 2.707e-56 199.0 COG0099@1|root,COG0099@2|Bacteria,3J0Q5@40117|Nitrospirae 40117|Nitrospirae J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits rpsM GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02952 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S13 QTD2_k127_4645503_20 330214.NIDE1337 1.435e-71 242.0 COG0100@1|root,COG0100@2|Bacteria,3J0KE@40117|Nitrospirae 40117|Nitrospirae J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome rpsK - - ko:K02948 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S11 QTD2_k127_4645503_9 330214.NIDE1338 3.896e-110 359.0 COG0522@1|root,COG0522@2|Bacteria,3J0IC@40117|Nitrospirae 40117|Nitrospirae J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit rpsD GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - ko:K02986 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S4,S4 QTD2_k127_4645503_2 330214.NIDE1339 1.414e-179 565.0 COG0202@1|root,COG0202@2|Bacteria,3J0AR@40117|Nitrospirae 40117|Nitrospirae K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoA - 2.7.7.6 ko:K03040 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L QTD2_k127_4645503_23 330214.NIDE1340 4.106e-59 207.0 COG0203@1|root,COG0203@2|Bacteria,3J0TE@40117|Nitrospirae 40117|Nitrospirae J Ribosomal protein L17 rplQ GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02879 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L17 QTD2_k127_4645503_22 330214.NIDE1341 3.279e-68 236.0 COG5375@1|root,COG5375@2|Bacteria 2|Bacteria S Protein conserved in bacteria - - - ko:K11719 - - - - ko00000,ko02000 1.B.42.1 - - LptC QTD2_k127_4645503_33 330214.NIDE1342 1.427e-44 171.0 COG1934@1|root,COG1934@2|Bacteria,3J1EG@40117|Nitrospirae 40117|Nitrospirae S OstA-like protein - - - ko:K09774 - - - - ko00000,ko02000 1.B.42.1 - - OstA QTD2_k127_4645503_7 330214.NIDE1343 1.67e-122 396.0 COG1137@1|root,COG1137@2|Bacteria,3J0GJ@40117|Nitrospirae 40117|Nitrospirae S ABC transporter - - - ko:K06861 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko01000,ko02000 1.B.42.1 - - ABC_tran,BCA_ABC_TP_C QTD2_k127_4645503_1 330214.NIDE1344 1.131e-234 735.0 COG1508@1|root,COG1508@2|Bacteria,3J0AT@40117|Nitrospirae 40117|Nitrospirae K Sigma-54 factor, Activator interacting domain (AID) rpoN - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD QTD2_k127_4645503_37 330214.NIDE1345 2.191e-34 140.0 COG1544@1|root,COG1544@2|Bacteria,3J0V7@40117|Nitrospirae 40117|Nitrospirae J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase hpf - - ko:K05808 - - - - ko00000,ko03009 - - - Ribosom_S30AE_C,Ribosomal_S30AE QTD2_k127_4645503_5 330214.NIDE1346 3.255e-144 461.0 COG1660@1|root,COG1660@2|Bacteria,3J0IK@40117|Nitrospirae 40117|Nitrospirae S Displays ATPase and GTPase activities - - - ko:K06958 - - - - ko00000,ko03019 - - - ATP_bind_2 QTD2_k127_4645503_3 330214.NIDE1348 1.826e-163 522.0 COG4972@1|root,COG4972@2|Bacteria,3J177@40117|Nitrospirae 40117|Nitrospirae NU Type IV pilus assembly protein PilM; - - - ko:K02662 - - - - ko00000,ko02035,ko02044 - - - PilM_2 QTD2_k127_4645503_18 330214.NIDE1349 1.956e-73 252.0 COG3166@1|root,COG3166@2|Bacteria,3J1EX@40117|Nitrospirae 40117|Nitrospirae NU Fimbrial assembly protein (PilN) - - - ko:K02663 - - - - ko00000,ko02035,ko02044 - - - PilN QTD2_k127_4645503_13 330214.NIDE1350 1.133e-86 290.0 COG3167@1|root,COG3167@2|Bacteria,3J1BH@40117|Nitrospirae 40117|Nitrospirae NU Pilus assembly protein, PilO - - - ko:K02664 - - - - ko00000,ko02035,ko02044 - - - PilO QTD2_k127_4645503_26 330214.NIDE1351 3.501e-54 198.0 COG3168@1|root,COG3168@2|Bacteria,3J1AT@40117|Nitrospirae 40117|Nitrospirae NU Pilus assembly protein, PilP - - - ko:K02665 - - - - ko00000,ko02035,ko02044 - - - PilP QTD2_k127_4645503_17 330214.NIDE1352 5.133e-81 284.0 COG4796@1|root,COG4796@2|Bacteria,3J0Q9@40117|Nitrospirae 40117|Nitrospirae U Secretin and TonB N terminus short domain - - - ko:K02666 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - Secretin,Secretin_N QTD2_k127_4650055_3 330214.NIDE3350 3.501e-80 270.0 COG2010@1|root,COG2010@2|Bacteria,3J17C@40117|Nitrospirae 2|Bacteria C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - CopD,Cytochrome_CBB3 QTD2_k127_4650055_2 330214.NIDE3351 5.475e-121 395.0 COG1426@1|root,COG1426@2|Bacteria,3J1CJ@40117|Nitrospirae 40117|Nitrospirae S Helix-turn-helix domain - - - - - - - - - - - - DUF4115,HTH_25 QTD2_k127_4650055_4 330214.NIDE3352 1.81e-78 268.0 COG3063@1|root,COG3063@2|Bacteria,3J0V4@40117|Nitrospirae 40117|Nitrospirae NU Tetratricopeptide repeat - - - - - - - - - - - - TPR_1,TPR_2,TPR_8 QTD2_k127_4650055_0 330214.NIDE3353 6.507e-170 536.0 COG0524@1|root,COG0524@2|Bacteria,3J0ZT@40117|Nitrospirae 40117|Nitrospirae G pfkB family carbohydrate kinase - - - - - - - - - - - - PfkB QTD2_k127_4650055_1 330214.NIDE3354 2.676e-128 417.0 COG0005@1|root,COG0005@2|Bacteria,3J0HC@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates mtnP - 2.4.2.28 ko:K00772 ko00270,ko01100,map00270,map01100 M00034 R01402 RC00063,RC02819 ko00000,ko00001,ko00002,ko01000 - - - PNP_UDP_1 QTD2_k127_4650055_5 330214.NIDE3355 1.449e-25 108.0 COG0324@1|root,COG0324@2|Bacteria,3J0KS@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) miaA GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 ko:K00791 ko00908,ko01100,ko01110,map00908,map01100,map01110 - R01122 RC02820 ko00000,ko00001,ko01000,ko01006,ko03016 - - - IPPT QTD2_k127_4656138_1 234267.Acid_3157 2.521e-122 407.0 COG3488@1|root,COG3488@2|Bacteria,3Y3DB@57723|Acidobacteria 57723|Acidobacteria C Di-haem oxidoreductase, putative peroxidase - - - - - - - - - - - - DHOR QTD2_k127_4656138_2 330214.NIDE4038 5.499e-110 362.0 COG0720@1|root,COG0720@2|Bacteria,3J0TW@40117|Nitrospirae 40117|Nitrospirae H 6-pyruvoyl tetrahydropterin synthase - - 4.1.2.50,4.2.3.12 ko:K01737 ko00790,ko01100,map00790,map01100 M00842,M00843 R04286,R09959 RC01117,RC02846,RC02847 ko00000,ko00001,ko00002,ko01000,ko03016 - - - PTPS QTD2_k127_4656138_4 330214.NIDE4039 9.826e-80 271.0 COG0247@1|root,COG0247@2|Bacteria,3J187@40117|Nitrospirae 40117|Nitrospirae C Protein of unknown function (DUF3501) - - - - - - - - - - - - DUF3501 QTD2_k127_4656138_0 330214.NIDE4040 1.085e-208 655.0 COG0247@1|root,COG1146@1|root,COG0247@2|Bacteria,COG1146@2|Bacteria 2|Bacteria C 4 iron, 4 sulfur cluster binding glpC GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0045333,GO:0046872,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.1.5.3,1.2.7.3 ko:K00113,ko:K00176,ko:K05524,ko:K13795,ko:K13796 ko00020,ko00564,ko00720,ko01100,ko01110,ko01120,ko01200,map00020,map00564,map00720,map01100,map01110,map01120,map01200 M00009,M00011,M00173,M00620 R00848,R01197 RC00004,RC00029,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - CCG,DUF3470,DUF3501,Fer4,Fer4_8 QTD2_k127_4656138_3 330214.NIDE4041 1.232e-85 284.0 COG1592@1|root,COG1592@2|Bacteria,3J0RY@40117|Nitrospirae 40117|Nitrospirae C Rubrerythrin - - - - - - - - - - - - Rubrerythrin QTD2_k127_4656138_6 330214.NIDE4045 4.649e-40 151.0 COG1977@1|root,COG1977@2|Bacteria 2|Bacteria H Mo-molybdopterin cofactor metabolic process moaD - - ko:K03636 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS QTD2_k127_4656138_7 330214.NIDE4047 5.276e-22 95.0 COG0776@1|root,COG0776@2|Bacteria 2|Bacteria L regulation of translation hup - - ko:K03530 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding QTD2_k127_4683840_4 330214.NIDE0347 1.517e-67 240.0 COG4715@1|root,COG4715@2|Bacteria 2|Bacteria S zinc ion binding yehQ GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - - - - - - - - - - SWIM QTD2_k127_4683840_3 330214.NIDE0349 5.667e-71 248.0 COG2755@1|root,COG2755@2|Bacteria 2|Bacteria E lipolytic protein G-D-S-L family tesA GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016289,GO:0016290,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0047617,GO:0052689,GO:0071704,GO:0140096,GO:1901564 3.1.1.5 ko:K10804 ko01040,map01040 - - - ko00000,ko00001,ko01000,ko01004 - - iECED1_1282.ECED1_0521,iLF82_1304.LF82_2242,iNRG857_1313.NRG857_02365 Lipase_GDSL_2 QTD2_k127_4683840_2 330214.NIDE0350 1.969e-95 317.0 COG1136@1|root,COG1136@2|Bacteria 2|Bacteria V lipoprotein transporter activity - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran QTD2_k127_4683840_0 330214.NIDE0351 0.0 1094.0 COG3127@1|root,COG3127@2|Bacteria 2|Bacteria Q FtsX-like permease family MA20_43810 - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD QTD2_k127_4683840_1 29581.BW37_03287 6.932e-100 339.0 COG2133@1|root,COG2133@2|Bacteria,1R86D@1224|Proteobacteria,2VTBE@28216|Betaproteobacteria,475Z6@75682|Oxalobacteraceae 28216|Betaproteobacteria G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - GSDH QTD2_k127_4683840_5 1254432.SCE1572_15220 1.195e-25 108.0 COG2133@1|root,COG2133@2|Bacteria,1PG5V@1224|Proteobacteria,4389W@68525|delta/epsilon subdivisions,2XA3Y@28221|Deltaproteobacteria,2YWB0@29|Myxococcales 28221|Deltaproteobacteria G Glucose / Sorbosone dehydrogenase - - - - - - - - - - - - GSDH QTD2_k127_4709080_2 330214.NIDE3527 5.6e-150 478.0 COG0841@1|root,COG0841@2|Bacteria,3J0XV@40117|Nitrospirae 40117|Nitrospirae V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K03296,ko:K07788,ko:K07789 ko02020,map02020 M00648 - - ko00000,ko00001,ko00002,ko02000 2.A.6.2 - - ACR_tran QTD2_k127_4709080_0 330214.NIDE3528 0.0 1585.0 COG0841@1|root,COG0841@2|Bacteria,3J0XV@40117|Nitrospirae 40117|Nitrospirae V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K03296,ko:K07788,ko:K07789 ko02020,map02020 M00648 - - ko00000,ko00001,ko00002,ko02000 2.A.6.2 - - ACR_tran QTD2_k127_4709080_1 330214.NIDE3529 2.042e-181 576.0 COG0845@1|root,COG0845@2|Bacteria,3J11U@40117|Nitrospirae 40117|Nitrospirae M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K07799 ko02020,map02020 M00648 - - ko00000,ko00001,ko00002,ko02000 8.A.1 - - - QTD2_k127_4791540_0 330214.NIDE2086 2.69e-193 622.0 COG1074@1|root,COG1074@2|Bacteria,3J16M@40117|Nitrospirae 40117|Nitrospirae L PD-(D/E)XK nuclease superfamily - - - - - - - - - - - - PDDEXK_1,UvrD-helicase,UvrD_C QTD2_k127_4791540_1 330214.NIDE2085 1.716e-138 457.0 COG3857@1|root,COG3857@2|Bacteria 2|Bacteria L exonuclease activity addB - 3.6.4.12 ko:K16899 - - - - ko00000,ko01000,ko03400 - - - Exonuc_V_gamma,PDDEXK_1,UvrD_C QTD2_k127_4852120_0 571166.KI421509_gene2107 2.521e-41 170.0 COG0265@1|root,COG1716@1|root,COG0265@2|Bacteria,COG1716@2|Bacteria,1NT6K@1224|Proteobacteria,2UPAI@28211|Alphaproteobacteria 28211|Alphaproteobacteria OT Trypsin-like peptidase domain - - - - - - - - - - - - Trypsin_2 QTD2_k127_4852120_1 237368.SCABRO_03249 5.939e-23 108.0 COG0589@1|root,COG0589@2|Bacteria,2J48V@203682|Planctomycetes 203682|Planctomycetes T Universal stress protein - - - - - - - - - - - - Usp QTD2_k127_4854559_10 330214.NIDE1683 2.981e-76 258.0 COG0652@1|root,COG0652@2|Bacteria,3J18H@40117|Nitrospirae 40117|Nitrospirae O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - 5.2.1.8 ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase QTD2_k127_4854559_4 330214.NIDE1682 7.035e-129 421.0 COG3292@1|root,COG3292@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y QTD2_k127_4854559_5 330214.NIDE1681 8.527e-123 398.0 COG0805@1|root,COG0805@2|Bacteria,3J0PJ@40117|Nitrospirae 40117|Nitrospirae U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes tatC - - ko:K03118 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - TatC QTD2_k127_4854559_21 330214.NIDE1680 1.168e-20 93.0 2DRP0@1|root,33CFM@2|Bacteria,3J1BN@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF465) - - - ko:K09794 - - - - ko00000 - - - DUF465 QTD2_k127_4854559_17 330214.NIDE1679 6.11e-51 186.0 COG0454@1|root,COG0456@2|Bacteria,3J1CI@40117|Nitrospirae 40117|Nitrospirae K Acetyltransferase (GNAT) domain rimI - 2.3.1.128 ko:K03789 - - - - ko00000,ko01000,ko03009 - - - Acetyltransf_1 QTD2_k127_4854559_12 330214.NIDE1678 3.317e-67 238.0 COG1214@1|root,COG1214@2|Bacteria,3J0VU@40117|Nitrospirae 40117|Nitrospirae O Glycoprotease family - - - ko:K14742 - - - - ko00000,ko03016 - - - Peptidase_M22 QTD2_k127_4854559_8 330214.NIDE1677 1.231e-91 309.0 COG2834@1|root,COG2834@2|Bacteria 2|Bacteria M Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) lolA - - - - - - - - - - - LolA QTD2_k127_4854559_1 330214.NIDE1676 2.998e-245 762.0 COG1066@1|root,COG1066@2|Bacteria,3J0BP@40117|Nitrospirae 40117|Nitrospirae O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function radA - - ko:K04485 - - - - ko00000,ko03400 - - - ATPase,ChlI,Lon_C QTD2_k127_4854559_11 330214.NIDE1596 9.081e-70 244.0 COG1225@1|root,COG1225@2|Bacteria,3J13P@40117|Nitrospirae 40117|Nitrospirae O AhpC/TSA family - - 1.11.1.15 ko:K03564 - - - - ko00000,ko01000 - - - AhpC-TSA QTD2_k127_4854559_18 330214.NIDE1595 8.038e-44 164.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE1595|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_4854559_20 330214.NIDE1594 1.2e-30 125.0 COG2952@1|root,COG2952@2|Bacteria,3J1DP@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF507) - - - - - - - - - - - - DUF507 QTD2_k127_4854559_19 330214.NIDE1593 5.752e-32 128.0 COG2952@1|root,COG2952@2|Bacteria,3J1ED@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF507) - - - - - - - - - - - - DUF507 QTD2_k127_4854559_14 330214.NIDE1592 3.634e-57 201.0 COG2164@1|root,COG2164@2|Bacteria,3J181@40117|Nitrospirae 40117|Nitrospirae S Cyclophilin-like - - - ko:K09143 - - - - ko00000 - - - Cyclophil_like QTD2_k127_4854559_7 330214.NIDE1591 2.194e-102 340.0 COG3359@1|root,COG3359@2|Bacteria,3J137@40117|Nitrospirae 40117|Nitrospirae L RNase_H superfamily - - - ko:K07502 - - - - ko00000 - - - RNase_H_2 QTD2_k127_4854559_13 330214.NIDE1958 1.675e-57 209.0 COG0631@1|root,COG0631@2|Bacteria 2|Bacteria T protein serine/threonine phosphatase activity - - 3.1.3.16 ko:K01090,ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C,PP2C_2 QTD2_k127_4854559_2 330214.NIDE1587 2.898e-195 659.0 COG0500@1|root,COG1073@1|root,COG2197@1|root,COG5000@1|root,COG1073@2|Bacteria,COG2197@2|Bacteria,COG2226@2|Bacteria,COG5000@2|Bacteria 2|Bacteria T phosphorelay sensor kinase activity - - 3.1.3.3 ko:K02038,ko:K02282,ko:K07018,ko:K07315 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko01000,ko02000,ko02035,ko02044,ko03021 3.A.1.7 - - GerE,HAMP,Hydrolase_4,Methyltransf_11,SpoIIE,dCache_1 QTD2_k127_4854559_6 330214.NIDE0964 2.305e-119 400.0 COG0642@1|root,COG2205@2|Bacteria 330214.NIDE0964|- T PhoQ Sensor - - - - - - - - - - - - - QTD2_k127_4854559_0 330214.NIDE1585 3.344e-261 810.0 COG2204@1|root,COG2204@2|Bacteria,3J0C2@40117|Nitrospirae 2|Bacteria T Bacterial regulatory protein, Fis family - - - ko:K02481,ko:K07713,ko:K07714 ko02020,map02020 M00499,M00500 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_4854559_15 330214.NIDE1584 2.019e-53 190.0 COG3437@1|root,COG3437@2|Bacteria,3J0ID@40117|Nitrospirae 2|Bacteria T response regulator MA20_23615 - - ko:K07814 - - - - ko00000,ko02022 - - - HD,HD_5,Response_reg QTD2_k127_4855712_17 330214.NIDE4031 2.537e-32 126.0 COG1217@1|root,COG1217@2|Bacteria,3J10A@40117|Nitrospirae 40117|Nitrospirae T Elongation factor G C-terminus typA - - ko:K06207 - - - - ko00000 - - - EFG_C,GTP_EFTU QTD2_k127_4855712_0 330214.NIDE4030 0.0 1160.0 COG5009@1|root,COG5009@2|Bacteria,3J0BH@40117|Nitrospirae 40117|Nitrospirae M Penicillin-binding protein OB-like domain - - 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - PCB_OB,Transgly,Transpeptidase QTD2_k127_4855712_16 330214.NIDE4029 8.063e-33 128.0 COG2975@1|root,COG2975@2|Bacteria,3J1CR@40117|Nitrospirae 40117|Nitrospirae S Iron-sulphur cluster assembly - - - - - - - - - - - - Fe-S_assembly QTD2_k127_4855712_1 330214.NIDE4028 8.47e-317 981.0 COG0443@1|root,COG0443@2|Bacteria,3J0YD@40117|Nitrospirae 40117|Nitrospirae O Hsp70 protein hscA - - ko:K04043,ko:K04044 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33,1.A.33.1 - - HSP70 QTD2_k127_4855712_7 330214.NIDE4027 3.12e-87 295.0 COG1076@1|root,COG1076@2|Bacteria,3J1CS@40117|Nitrospirae 40117|Nitrospirae O DnaJ molecular chaperone homology domain hscB - - ko:K04082 - - - - ko00000,ko03029,ko03110 - - - - QTD2_k127_4855712_13 330214.NIDE4026 1.359e-64 224.0 COG0316@1|root,COG0316@2|Bacteria,3J17Y@40117|Nitrospirae 40117|Nitrospirae S Iron-sulphur cluster biosynthesis - - - ko:K13628 - - - - ko00000,ko03016 - - - Fe-S_biosyn QTD2_k127_4855712_9 330214.NIDE4025 1.732e-73 249.0 COG0822@1|root,COG0822@2|Bacteria,3J123@40117|Nitrospirae 40117|Nitrospirae C A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters - - - ko:K04488 - - - - ko00000 - - - NifU_N QTD2_k127_4855712_4 330214.NIDE4024 8.366e-230 716.0 COG1104@1|root,COG1104@2|Bacteria,3J0AX@40117|Nitrospirae 40117|Nitrospirae E Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins iscS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 QTD2_k127_4855712_8 330214.NIDE4023 6.959e-78 262.0 COG1959@1|root,COG1959@2|Bacteria,3J18M@40117|Nitrospirae 40117|Nitrospirae K Transcriptional regulator - - - - - - - - - - - - Rrf2 QTD2_k127_4855712_10 330214.NIDE4022 3.296e-72 246.0 COG0633@1|root,COG0633@2|Bacteria,3J1AM@40117|Nitrospirae 40117|Nitrospirae C 2Fe-2S iron-sulfur cluster binding domain - - - ko:K04755 - - - - ko00000 - - - Fer2 QTD2_k127_4855712_12 330214.NIDE4021 3.932e-65 231.0 COG1018@1|root,COG1018@2|Bacteria 2|Bacteria C nitric oxide dioxygenase activity poxF - - - - - - - - - - - FAD_binding_6,NAD_binding_1 QTD2_k127_4855712_3 330214.NIDE4019 1.233e-260 811.0 COG0008@1|root,COG0008@2|Bacteria,3J0CJ@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) gltX - 6.1.1.17 ko:K01885 ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120 M00121,M00359,M00360 R05578 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016 - - - tRNA-synt_1c QTD2_k127_4855712_5 1408444.JHYC01000011_gene998 4.969e-152 487.0 COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,1RN4D@1236|Gammaproteobacteria,1JD2W@118969|Legionellales 118969|Legionellales C Zinc-binding dehydrogenase yahK - - ko:K13979 - - - - ko00000,ko01000 - - - ADH_N,ADH_zinc_N QTD2_k127_4855712_19 1232410.KI421413_gene579 3.299e-16 79.0 COG3024@1|root,COG3024@2|Bacteria,1NGJ8@1224|Proteobacteria,42XRW@68525|delta/epsilon subdivisions,2WT0E@28221|Deltaproteobacteria,43VPM@69541|Desulfuromonadales 28221|Deltaproteobacteria S Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase yacG - - ko:K09862 - - - - ko00000 - - - YacG QTD2_k127_4855712_14 330214.NIDE0866 1.227e-46 176.0 COG2854@1|root,COG2854@2|Bacteria,3J13Z@40117|Nitrospirae 40117|Nitrospirae Q Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07323 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - MlaC QTD2_k127_4855712_2 330214.NIDE4016 2.81e-312 964.0 COG0008@1|root,COG0008@2|Bacteria 2|Bacteria J glutamate-tRNA ligase activity glnS GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.18 ko:K01886 ko00970,ko01100,map00970,map01100 M00359,M00360 R03652 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - iECIAI39_1322.ECIAI39_0637 tRNA-synt_1c,tRNA-synt_1c_C QTD2_k127_4855712_11 330214.NIDE4013 3.008e-67 230.0 2EQ22@1|root,33HNG@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_4855712_18 904314.SEVCU012_0040 6.185e-22 109.0 COG4974@1|root,COG4974@2|Bacteria,1TQRG@1239|Firmicutes,4HAEX@91061|Bacilli,4GX18@90964|Staphylococcaceae 91061|Bacilli D Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids xerD - - ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase QTD2_k127_4855712_6 330214.NIDE0337 1.891e-110 366.0 COG2946@1|root,COG2946@2|Bacteria 2|Bacteria L Replication initiation factor nicK - - ko:K07467 - - - - ko00000 - - - HTH_3,Rep_trans QTD2_k127_4855712_22 666685.R2APBS1_3322 3.386e-10 60.0 COG4591@1|root,COG4591@2|Bacteria,1QVRH@1224|Proteobacteria,1T2I0@1236|Gammaproteobacteria,1XD5X@135614|Xanthomonadales 135614|Xanthomonadales M COG0577 ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD QTD2_k127_4856359_3 330214.NIDE0375 1.561e-11 69.0 COG4191@1|root,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - DUF4041,GGDEF,HATPase_c,HisKA,Response_reg,T5orf172,dCache_1 QTD2_k127_4856359_1 1123519.PSJM300_08540 5.185e-83 287.0 COG3594@1|root,COG3594@2|Bacteria,1QV1G@1224|Proteobacteria,1S232@1236|Gammaproteobacteria,1Z0DE@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria G COG3594 Fucose 4-O-acetylase and related acetyltransferases - - - - - - - - - - - - Acyl_transf_3 QTD2_k127_4856359_0 330214.NIDE0379 1.782e-144 465.0 COG0564@1|root,COG0564@2|Bacteria,3J0HF@40117|Nitrospirae 40117|Nitrospirae J Responsible for synthesis of pseudouridine from uracil - - 5.4.99.23 ko:K06180 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 QTD2_k127_4868632_2 330214.NIDE1160 3.073e-142 457.0 COG0075@1|root,COG0075@2|Bacteria,3J0FC@40117|Nitrospirae 2|Bacteria E Evidence 2b Function of strongly homologous gene spt - 2.6.1.44,2.6.1.45,2.6.1.51 ko:K00830 ko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146 M00346,M00532 R00369,R00372,R00585,R00588 RC00006,RC00008,RC00018 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_5 QTD2_k127_4868632_4 330214.NIDE1159 6.871e-77 263.0 COG4191@1|root,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - DUF4041,GGDEF,HATPase_c,HisKA,Response_reg,T5orf172,dCache_1 QTD2_k127_4868632_1 330214.NIDE1157 1.776e-163 523.0 COG1228@1|root,COG1228@2|Bacteria 2|Bacteria Q imidazolonepropionase activity - - - - - - - - - - - - Amidohydro_1 QTD2_k127_4868632_3 330214.NIDE1156 2.733e-93 312.0 COG0484@1|root,COG0484@2|Bacteria 2|Bacteria O heat shock protein binding dnaJ2 - - ko:K03686,ko:K05516 - - - - ko00000,ko03029,ko03036,ko03110 - - - DnaJ,DnaJ_C QTD2_k127_4868632_0 330214.NIDE1155 6.339e-215 675.0 COG0477@1|root,COG2814@2|Bacteria,3J171@40117|Nitrospirae 40117|Nitrospirae EGP Sugar (and other) transporter - - - ko:K08178 - - - - ko00000,ko02000 2.A.1.12 - - MFS_1 QTD2_k127_4871816_2 234267.Acid_5196 8.034e-40 151.0 COG0500@1|root,COG2226@2|Bacteria,3Y4B3@57723|Acidobacteria 57723|Acidobacteria Q PFAM Methyltransferase type 11 - - - - - - - - - - - - Methyltransf_11 QTD2_k127_4871816_0 234267.Acid_5197 2.557e-170 542.0 COG4977@1|root,COG4977@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - AraC_binding,Cupin_6,HTH_18 QTD2_k127_4871816_1 1198114.AciX9_2007 4.104e-44 163.0 COG2826@1|root,COG2826@2|Bacteria,3Y896@57723|Acidobacteria,2JN59@204432|Acidobacteriia 204432|Acidobacteriia L Helix-turn-helix domain - - - - - - - - - - - - HTH_38,rve QTD2_k127_4873178_0 347834.RHE_CH00754 2.55e-149 486.0 COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,2TU3M@28211|Alphaproteobacteria,4BBEB@82115|Rhizobiaceae 28211|Alphaproteobacteria GM ATP-binding protein wzt - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C QTD2_k127_4873178_2 347834.RHE_CH00753 4.137e-69 246.0 COG1682@1|root,COG1682@2|Bacteria,1N0X3@1224|Proteobacteria,2U57D@28211|Alphaproteobacteria,4BFB5@82115|Rhizobiaceae 28211|Alphaproteobacteria GM Transport permease protein wzm - - ko:K09690 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC2_membrane QTD2_k127_4873178_5 189753.AXAS01000005_gene655 2.188e-36 148.0 COG2242@1|root,COG2242@2|Bacteria,1QW6F@1224|Proteobacteria,2TWPP@28211|Alphaproteobacteria,3JV9N@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria H Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - Methyltransf_21 QTD2_k127_4873178_3 118166.JH976537_gene16 3.249e-53 199.0 COG0500@1|root,COG2226@2|Bacteria,1GQU7@1117|Cyanobacteria,1HHZR@1150|Oscillatoriales 1117|Cyanobacteria Q Protein of unknown function (DUF1698) - - - - - - - - - - - - Methyltransf_23 QTD2_k127_4873178_6 1041142.ATTP01000021_gene176 1.145e-35 149.0 COG3239@1|root,COG3239@2|Bacteria,1PFCX@1224|Proteobacteria,2VAZ7@28211|Alphaproteobacteria,4BHPX@82115|Rhizobiaceae 28211|Alphaproteobacteria I Fatty acid desaturase - - - - - - - - - - - - FA_desaturase QTD2_k127_4873178_1 1197906.CAJQ02000023_gene2169 4.169e-72 253.0 COG2520@1|root,COG2520@2|Bacteria,1RK9Q@1224|Proteobacteria 1224|Proteobacteria J Methyltransferase FkbM domain - - - - - - - - - - - - Methyltransf_21 QTD2_k127_4887022_0 330214.NIDE1408 7.083e-299 933.0 COG1200@1|root,COG1200@2|Bacteria,3J0E8@40117|Nitrospirae 40117|Nitrospirae L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) recG - 3.6.4.12 ko:K03655 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,RecG_wedge QTD2_k127_4888619_15 330214.NIDE2047 7.609e-95 315.0 COG0159@1|root,COG0159@2|Bacteria,3J0ME@40117|Nitrospirae 40117|Nitrospirae E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate trpA - 4.2.1.20 ko:K01695 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - Trp_syntA QTD2_k127_4888619_3 330214.NIDE2046 9.182e-225 702.0 COG0133@1|root,COG0133@2|Bacteria,3J0E1@40117|Nitrospirae 40117|Nitrospirae E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine trpB - 4.2.1.20 ko:K01696 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP QTD2_k127_4888619_16 330214.NIDE2045 8.877e-91 302.0 COG0135@1|root,COG0135@2|Bacteria,3J0SA@40117|Nitrospirae 40117|Nitrospirae E N-(5'phosphoribosyl)anthranilate (PRA) isomerase trpF - 5.3.1.24 ko:K01817 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03509 RC00945 ko00000,ko00001,ko00002,ko01000 - - - PRAI QTD2_k127_4888619_11 330214.NIDE2043 7.61e-120 390.0 COG0134@1|root,COG0134@2|Bacteria,3J0NT@40117|Nitrospirae 40117|Nitrospirae E Indole-3-glycerol phosphate synthase trpC - 4.1.1.48 ko:K01609 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03508 RC00944 ko00000,ko00001,ko00002,ko01000 - - - IGPS QTD2_k127_4888619_7 330214.NIDE2042 7.09e-161 512.0 COG0547@1|root,COG0547@2|Bacteria,3J0HE@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) trpD - 2.4.2.18 ko:K00766 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R01073 RC00440 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 QTD2_k127_4888619_14 330214.NIDE2041 3.146e-101 332.0 COG0512@1|root,COG0512@2|Bacteria,3J0H8@40117|Nitrospirae 40117|Nitrospirae EH Peptidase C26 - - 4.1.3.27 ko:K01658 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - GATase QTD2_k127_4888619_2 330214.NIDE2040 4.14e-261 813.0 COG0147@1|root,COG0147@2|Bacteria,3J0FG@40117|Nitrospirae 40117|Nitrospirae EH Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia trpE - 4.1.3.27 ko:K01657 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Anth_synt_I_N,Chorismate_bind QTD2_k127_4888619_22 330214.NIDE2039 2.412e-51 189.0 COG1388@1|root,COG1388@2|Bacteria 2|Bacteria M LysM domain - - - - - - - - - - - - LysM,SLT QTD2_k127_4888619_1 330214.NIDE2036 9.053e-311 965.0 COG0272@1|root,COG0272@2|Bacteria,3J0W8@40117|Nitrospirae 40117|Nitrospirae L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 QTD2_k127_4888619_5 330214.NIDE2035 8.616e-186 589.0 COG1253@1|root,COG1253@2|Bacteria,3J0KN@40117|Nitrospirae 40117|Nitrospirae S Transporter associated domain - - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,CorC_HlyC,DUF21 QTD2_k127_4888619_17 330214.NIDE2034 4.187e-87 293.0 COG0797@1|root,COG0797@2|Bacteria,3J0PD@40117|Nitrospirae 40117|Nitrospirae M Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides rlpA - - ko:K03642 - - - - ko00000 - - - DPBB_1,SPOR QTD2_k127_4888619_20 330214.NIDE2033 5.622e-63 218.0 COG4747@1|root,COG4747@2|Bacteria,3J1DW@40117|Nitrospirae 40117|Nitrospirae S ACT domain - - - - - - - - - - - - ACT QTD2_k127_4888619_0 330214.NIDE1937 0.0 2060.0 COG0209@1|root,COG0209@2|Bacteria,3J0MG@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen - - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_lgC,Ribonuc_red_lgN,TSCPD QTD2_k127_4888619_8 330214.NIDE1934 4.837e-156 503.0 COG0477@1|root,COG2814@2|Bacteria,3J0ZP@40117|Nitrospirae 40117|Nitrospirae EGP Acetyl-coenzyme A transporter 1 - - - ko:K08218 ko01501,map01501 M00628 - - ko00000,ko00001,ko00002,ko02000 2.A.1.25 - - MFS_1 QTD2_k127_4888619_6 330214.NIDE1920 2.828e-170 545.0 COG0621@1|root,COG0621@2|Bacteria,3J112@40117|Nitrospirae 40117|Nitrospirae J Uncharacterized protein family UPF0004 - - 2.8.4.5 ko:K18707 - - R10649 RC00003,RC03221 ko00000,ko01000,ko03016 - - - Radical_SAM,UPF0004 QTD2_k127_4888619_4 330214.NIDE1919 2.499e-205 648.0 COG0621@1|root,COG0621@2|Bacteria,3J0GE@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB - 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 QTD2_k127_4888619_12 330214.NIDE1916 1.037e-119 388.0 COG0417@1|root,COG0417@2|Bacteria 2|Bacteria L DNA replication proofreading polB - 2.7.7.7 ko:K02336,ko:K06877,ko:K07501 - - - - ko00000,ko01000,ko03400 - - - DNA_pol_B,DNA_pol_B_exo1,DNA_pol_B_exo2,RNase_H_2 QTD2_k127_4888619_21 330214.NIDE1915 5.531e-58 203.0 COG0494@1|root,COG0494@2|Bacteria 2|Bacteria L nUDIX hydrolase mutY - 3.6.1.55 ko:K03574,ko:K03575 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD,NUDIX,NUDIX_4 QTD2_k127_4888619_10 330214.NIDE1914 5.325e-122 394.0 COG1194@1|root,COG1194@2|Bacteria,3J160@40117|Nitrospirae 40117|Nitrospirae L FES - - - ko:K03575 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD QTD2_k127_4888619_13 330214.NIDE1909 1.084e-106 350.0 COG4221@1|root,COG4221@2|Bacteria 2|Bacteria IQ oxidoreductase activity - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short QTD2_k127_4888619_27 330214.NIDE1896 1.653e-31 124.0 COG2026@1|root,COG2026@2|Bacteria 2|Bacteria DJ nuclease activity - - - ko:K06218 - - - - ko00000,ko02048 - - - ParE_toxin QTD2_k127_4888619_28 330214.NIDE1895 3.903e-23 102.0 COG0316@1|root,COG0316@2|Bacteria 2|Bacteria S protein maturation hesB - - ko:K07390,ko:K13628,ko:K15724 - - - - ko00000,ko03016,ko03029,ko03110 - - - Fe-S_biosyn,Glutaredoxin,NifU,Rhodanese QTD2_k127_4888619_18 330214.NIDE1894 1.847e-79 268.0 COG1051@1|root,COG1051@2|Bacteria 2|Bacteria F GDP-mannose mannosyl hydrolase activity - - 3.6.1.13 ko:K01515 ko00230,map00230 - R01054 RC00002 ko00000,ko00001,ko01000 - - - NUDIX,Nudix_N_2 QTD2_k127_4888619_9 1266925.JHVX01000004_gene1149 6.174e-137 445.0 COG0116@1|root,COG0116@2|Bacteria,1MUQM@1224|Proteobacteria,2VHMY@28216|Betaproteobacteria,372QJ@32003|Nitrosomonadales 28216|Betaproteobacteria L THUMP rlmL - - ko:K07444 - - - - ko00000,ko01000 - - - THUMP,UPF0020 QTD2_k127_4888619_23 330214.NIDE1891 3.092e-51 194.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - 2.7.11.1 ko:K08884 - - - - ko00000,ko01000,ko01001 - - - AAA_16,Cytochrom_C,DUF1080,DUF4132,Pkinase QTD2_k127_4897955_2 330214.NIDE1850 7.499e-34 132.0 COG2127@1|root,COG2127@2|Bacteria 2|Bacteria T Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation clpS GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0050896,GO:0051087 - ko:K06891 - - - - ko00000 - - - ClpS QTD2_k127_4897955_1 330214.NIDE1848 5.932e-46 169.0 COG3055@1|root,COG3055@2|Bacteria 2|Bacteria G Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - - - - - - - - - - DUF3386,Kelch_1,Kelch_4,Kelch_5,fn3 QTD2_k127_4903720_7 330214.NIDE0243 2.003e-76 260.0 COG0560@1|root,COG0560@2|Bacteria 2|Bacteria E Phosphoserine phosphatase - - - - - - - - - - - - HAD,NAD_binding_4,Sterile QTD2_k127_4903720_5 330214.NIDE0244 1.862e-100 332.0 COG0602@1|root,COG0602@2|Bacteria,3J0M2@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds queE - 4.3.99.3 ko:K10026 ko00790,ko01100,map00790,map01100 - R10002 RC02989 ko00000,ko00001,ko01000,ko03016 - - - Fer4_14,Radical_SAM QTD2_k127_4903720_3 56780.SYN_02170 5.985e-144 471.0 COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,42M2G@68525|delta/epsilon subdivisions,2WJ80@28221|Deltaproteobacteria,2MRFV@213462|Syntrophobacterales 28221|Deltaproteobacteria J Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides pepA - 3.4.11.1 ko:K01255 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M17,Peptidase_M17_N QTD2_k127_4903720_2 330214.NIDE0246 7.919e-161 514.0 COG1472@1|root,COG1472@2|Bacteria,3J0MK@40117|Nitrospirae 40117|Nitrospirae G Glycosyl hydrolase family 3 N terminal domain - - 3.2.1.52 ko:K01207 ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501 M00628 R00022,R05963,R07809,R07810,R10831 RC00049 ko00000,ko00001,ko00002,ko01000 - - - Glyco_hydro_3 QTD2_k127_4903720_9 330214.NIDE0248 1.101e-55 198.0 2EC6I@1|root,33651@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - PsiE QTD2_k127_4903720_0 330214.NIDE0250 5.473e-247 770.0 COG0531@1|root,COG0531@2|Bacteria,3J0ZY@40117|Nitrospirae 40117|Nitrospirae E Amino acid permease - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 QTD2_k127_4903720_4 330214.NIDE0251 2.343e-113 370.0 COG2071@1|root,COG2071@2|Bacteria,3J0PV@40117|Nitrospirae 40117|Nitrospirae S Peptidase C26 - - - ko:K07010 - - - - ko00000,ko01002 - - - Peptidase_C26 QTD2_k127_4903720_1 330214.NIDE0254 2.973e-181 574.0 COG0006@1|root,COG0006@2|Bacteria 2|Bacteria E proline dipeptidase activity - - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 QTD2_k127_4903720_6 330214.NIDE0255 3.122e-88 299.0 COG1826@1|root,COG1826@2|Bacteria 2|Bacteria U protein secretion tatA - - ko:K03116 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 QTD2_k127_4903720_11 330214.NIDE0256 2.276e-36 149.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity cpeZ - - ko:K05386 ko00196,ko01100,map00196,map01100 - - - ko00000,ko00001,ko00194 - - - HEAT_2,HEAT_PBS QTD2_k127_4923603_4 1123354.AUDR01000015_gene351 3.714e-05 49.0 COG1371@1|root,COG1371@2|Bacteria 2|Bacteria J PFAM Archease protein family (DUF101 UPF0211) - - 2.7.7.72 ko:K00974 ko03013,map03013 - R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016 - - - Archease QTD2_k127_4923603_1 679926.Mpet_0666 2.39e-86 298.0 COG0389@1|root,arCOG04582@2157|Archaea,2XTZZ@28890|Euryarchaeota,2NAE4@224756|Methanomicrobia 224756|Methanomicrobia L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis dbh - 2.7.7.7 ko:K04479 - - - - ko00000,ko01000,ko03400 - - - IMS,IMS_C,IMS_HHH QTD2_k127_4923603_0 1249627.D779_2878 7.269e-99 338.0 COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,1RY8P@1236|Gammaproteobacteria,1WWGX@135613|Chromatiales 135613|Chromatiales E PFAM amino acid permease-associated region - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 QTD2_k127_4923603_2 880073.Calab_1912 1.691e-70 247.0 COG2518@1|root,COG2518@2|Bacteria,2NP7E@2323|unclassified Bacteria 2|Bacteria J Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins pcm GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 ko:K00573 - - - - ko00000,ko01000 - - - PCMT QTD2_k127_4923603_5 56780.SYN_01240 0.0003328 44.0 COG1180@1|root,COG1180@2|Bacteria,1NQC1@1224|Proteobacteria,42N7U@68525|delta/epsilon subdivisions,2WJ81@28221|Deltaproteobacteria,2MQ4H@213462|Syntrophobacterales 28221|Deltaproteobacteria C PFAM Radical SAM - - 1.97.1.4 ko:K04069 - - R04710 - ko00000,ko01000 - - - Fer4_12,Radical_SAM QTD2_k127_4923603_3 399550.Smar_0720 4.877e-44 169.0 COG2518@1|root,arCOG00976@2157|Archaea,2XPYU@28889|Crenarchaeota 28889|Crenarchaeota J Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins pcm GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 ko:K00573 - - - - ko00000,ko01000 - - - PCMT QTD2_k127_4925174_5 1041139.KB902691_gene782 6.781e-29 120.0 COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,1MVWY@1224|Proteobacteria,2TRSZ@28211|Alphaproteobacteria,4B71J@82115|Rhizobiaceae 28211|Alphaproteobacteria L DNA ligase ligD - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,LigD_N QTD2_k127_4925174_2 1232410.KI421419_gene2504 9.795e-32 132.0 COG1818@1|root,COG1818@2|Bacteria,1NEZ5@1224|Proteobacteria,42W0F@68525|delta/epsilon subdivisions,2WS35@28221|Deltaproteobacteria,43UTM@69541|Desulfuromonadales 28221|Deltaproteobacteria S THUMP - - - - - - - - - - - - THUMP QTD2_k127_4925174_1 401526.TcarDRAFT_1761 5.517e-56 201.0 COG0778@1|root,COG0778@2|Bacteria,1V75Q@1239|Firmicutes,4H8US@909932|Negativicutes 909932|Negativicutes C Nitroreductase family - - - - - - - - - - - - Nitroreductase QTD2_k127_4925174_0 330214.NIDE3823 1.952e-112 370.0 COG1748@1|root,COG1748@2|Bacteria 2|Bacteria E saccharopine dehydrogenase activity ddh - 1.4.1.16 ko:K03340 ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230 M00526 R02755 RC00006 ko00000,ko00001,ko00002,ko01000 - - - DAPDH_C,DapB_N QTD2_k127_4925174_3 330214.NIDE3820 1.093e-31 128.0 COG3402@1|root,COG3402@2|Bacteria 2|Bacteria S Bacterial PH domain - - - - - - - - - - - - bPH_2 QTD2_k127_5116157_0 330214.NIDE0232 2.855e-285 879.0 COG3383@1|root,COG3383@2|Bacteria,3J0UR@40117|Nitrospirae 2|Bacteria C Molydopterin dinucleotide binding domain hcnA - 1.4.99.5,1.5.3.1 ko:K00302,ko:K10814 ko00260,ko00460,ko01100,ko01110,map00260,map00460,map01100,map01110 - R00374,R00610,R05704 RC00060,RC00557,RC02808 ko00000,ko00001,ko01000,ko02042 - - - Fer2_4 QTD2_k127_5116157_1 330214.NIDE0233 5.023e-270 831.0 COG0649@1|root,COG0649@2|Bacteria,3J0FM@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoD - 1.6.5.3 ko:K00333,ko:K13378 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_49kDa,NiFeSe_Hases QTD2_k127_5116157_5 330214.NIDE0234 4.021e-84 281.0 COG0852@1|root,COG0852@2|Bacteria,3J168@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoC - 1.6.5.3 ko:K00332 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_30kDa QTD2_k127_5116157_4 330214.NIDE0235 1.188e-106 347.0 COG0377@1|root,COG0377@2|Bacteria,3J11S@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q6 QTD2_k127_5116157_3 330214.NIDE0237 3.599e-127 425.0 COG1360@1|root,COG1360@2|Bacteria 2|Bacteria N Flagellar Motor Protein - - - ko:K02557 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - OmpA QTD2_k127_5116157_2 330214.NIDE0238 1.004e-130 443.0 COG1198@1|root,COG1198@2|Bacteria,3J0MZ@40117|Nitrospirae 40117|Nitrospirae L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA priA - - ko:K04066 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - - QTD2_k127_5116157_6 330214.NIDE0240 2.219e-49 179.0 COG0745@1|root,COG0745@2|Bacteria 330214.NIDE0240|- T phosphorelay signal transduction system - - - - - - - - - - - - - QTD2_k127_5116157_8 330214.NIDE0243 3.016e-15 79.0 COG0560@1|root,COG0560@2|Bacteria 2|Bacteria E Phosphoserine phosphatase - - - - - - - - - - - - HAD,NAD_binding_4,Sterile QTD2_k127_5151481_2 330214.NIDE4314 1.654e-111 362.0 COG1899@1|root,COG1899@2|Bacteria 2|Bacteria O peptidyl-lysine modification to peptidyl-hypusine - - - - - - - - - - - - - QTD2_k127_5151481_11 330214.NIDE4315 2.728e-61 219.0 COG3091@1|root,COG3091@2|Bacteria 2|Bacteria K SprT-like family sprT - - ko:K02742 - - - - ko00000 - - - SprT-like,Zn_ribbon_SprT QTD2_k127_5151481_1 330214.NIDE4316 3.164e-152 490.0 COG0389@1|root,COG0389@2|Bacteria 2|Bacteria L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII dinB GO:0003674,GO:0003824,GO:0003887,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 ko:K02346 - - - - ko00000,ko01000,ko03400 - - - IMS,IMS_C,IMS_HHH QTD2_k127_5151481_10 330214.NIDE4317 7.445e-69 237.0 COG0615@1|root,COG0615@2|Bacteria,3J0JP@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - - - - - - - - - - CTP_transf_like,Hydrolase_3 QTD2_k127_5151481_0 330214.NIDE4318 0.0 1682.0 COG1197@1|root,COG1197@2|Bacteria,3J0BA@40117|Nitrospirae 40117|Nitrospirae L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site mfd - - ko:K03723 ko03420,map03420 - - - ko00000,ko00001,ko01000,ko03400 - - - CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF QTD2_k127_5151481_4 330214.NIDE4319 4.661e-109 360.0 COG0760@1|root,COG0760@2|Bacteria,3J16U@40117|Nitrospirae 40117|Nitrospirae O PPIC-type PPIASE domain - - 5.2.1.8 ko:K03769 - - - - ko00000,ko01000,ko03110 - - - Rotamase_2,SurA_N_3 QTD2_k127_5151481_3 330214.NIDE4320 2.277e-110 368.0 COG0760@1|root,COG0760@2|Bacteria,3J0SR@40117|Nitrospirae 40117|Nitrospirae O SurA N-terminal domain - - 5.2.1.8 ko:K03771 - - - - ko00000,ko01000,ko03110 - - - Rotamase_3,SurA_N QTD2_k127_5151481_14 1121430.JMLG01000002_gene1010 8.863e-49 181.0 COG0218@1|root,COG0218@2|Bacteria,1TSPW@1239|Firmicutes,24836@186801|Clostridia,261XK@186807|Peptococcaceae 186801|Clostridia D Necessary for normal cell division and for the maintenance of normal septation engB - - ko:K03978 - - - - ko00000,ko03036 - - - MMR_HSR1 QTD2_k127_5151481_7 330214.NIDE4322 1.117e-91 308.0 COG0744@1|root,COG0744@2|Bacteria,3J127@40117|Nitrospirae 40117|Nitrospirae M Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors mtgA - 2.4.1.129 ko:K03814 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly QTD2_k127_5151481_5 671143.DAMO_0098 6.473e-103 360.0 COG1629@1|root,COG4771@2|Bacteria 2|Bacteria P TonB-dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec QTD2_k127_5151481_12 330214.NIDE4323 1.693e-56 205.0 COG3565@1|root,COG3565@2|Bacteria 2|Bacteria S Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - ko:K06991 - - - - ko00000 - - - Glyoxalase QTD2_k127_5151481_6 330214.NIDE4324 4.687e-100 336.0 COG1446@1|root,COG1446@2|Bacteria,3J19S@40117|Nitrospirae 40117|Nitrospirae E Asparaginase - - 3.4.19.5 ko:K13051 - - - - ko00000,ko01000,ko01002 - - - Asparaginase_2 QTD2_k127_5151481_8 330214.NIDE4326 2.954e-88 295.0 2CK1C@1|root,32SJA@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_5151481_13 330214.NIDE4327 7.645e-55 196.0 COG1490@1|root,COG1490@2|Bacteria,3J149@40117|Nitrospirae 40117|Nitrospirae J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality dtd GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - ko:K07560 - - - - ko00000,ko01000,ko03016 - - - Tyr_Deacylase QTD2_k127_5151481_15 330214.NIDE4328 1.369e-46 173.0 COG0350@1|root,COG0350@2|Bacteria,3J1A8@40117|Nitrospirae 40117|Nitrospirae L Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated - - 2.1.1.63 ko:K00567 - - - - ko00000,ko01000,ko03400 - - - DNA_binding_1 QTD2_k127_5151481_9 234267.Acid_5915 2.126e-76 262.0 COG0003@1|root,COG0071@1|root,COG0003@2|Bacteria,COG0071@2|Bacteria,3Y60Y@57723|Acidobacteria 57723|Acidobacteria OP Anion-transporting ATPase - - 3.6.3.16 ko:K01551 - - - - ko00000,ko01000,ko02000 3.A.19.1,3.A.21.1,3.A.4.1 - - ArsA_ATPase QTD2_k127_5158257_4 330214.NIDE0169 2.895e-67 235.0 COG0359@1|root,COG0359@2|Bacteria,3J0MQ@40117|Nitrospirae 40117|Nitrospirae J binds to the 23S rRNA rplI GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02939 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L9_C,Ribosomal_L9_N QTD2_k127_5158257_0 330214.NIDE0168 7.731e-242 751.0 COG0112@1|root,COG0112@2|Bacteria,3J0CB@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism glyA - 2.1.2.1 ko:K00600 ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523 M00140,M00141,M00346,M00532 R00945,R09099 RC00022,RC00112,RC01583,RC02958 ko00000,ko00001,ko00002,ko01000 - - - SHMT QTD2_k127_5158257_5 330214.NIDE0167 7.99e-66 228.0 COG1327@1|root,COG1327@2|Bacteria,3J14C@40117|Nitrospirae 40117|Nitrospirae K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes nrdR - - ko:K07738 - - - - ko00000,ko03000 - - - ATP-cone QTD2_k127_5158257_1 330214.NIDE0166 4.827e-184 581.0 COG1063@1|root,COG4585@1|root,COG1063@2|Bacteria,COG4585@2|Bacteria 2|Bacteria T Histidine kinase - - 1.1.1.103,2.7.13.3 ko:K00060,ko:K07777 ko00260,ko02020,map00260,map02020 M00478 R01465 RC00525 ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - GAF,GAF_2,HATPase_c,HisKA_3,NAS QTD2_k127_5158257_6 1463885.KL578437_gene9378 5.217e-58 209.0 COG2197@1|root,COG2197@2|Bacteria,2GKBX@201174|Actinobacteria 201174|Actinobacteria T response regulator, receiver - - - ko:K02479 - - - - ko00000,ko02022 - - - GerE,Response_reg QTD2_k127_5158257_9 330214.NIDE3235 6.721e-07 63.0 COG5278@1|root,COG5278@2|Bacteria 2|Bacteria T phosphoserine phosphatase activity - - 3.1.3.3,4.6.1.1 ko:K01768,ko:K07315 ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213 M00695 R00089,R00434 RC00295 ko00000,ko00001,ko00002,ko01000,ko03021 - - - CHASE3 QTD2_k127_5158257_7 1540221.JQNI01000002_gene2079 2.579e-33 149.0 COG0642@1|root,COG2205@2|Bacteria 1540221.JQNI01000002_gene2079|- T PhoQ Sensor - - - - - - - - - - - - - QTD2_k127_5158257_3 335543.Sfum_0621 1.167e-101 348.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria 28221|Deltaproteobacteria T two component, sigma54 specific, transcriptional regulator, Fis family hsfA - - ko:K07713,ko:K07714,ko:K07715 ko02020,ko02024,map02020,map02024 M00499,M00500,M00502 - - ko00000,ko00001,ko00002,ko02022 - - - GAF,HTH_8,Response_reg,Sigma54_activat QTD2_k127_5158257_8 330214.NIDE3237 1.505e-11 69.0 COG0243@1|root,COG0243@2|Bacteria 2|Bacteria C molybdopterin cofactor binding ddhA GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.17.99.2,1.7.5.1,1.8.2.4 ko:K00370,ko:K10700,ko:K16964,ko:K17050 ko00642,ko00910,ko00920,ko01100,ko01120,ko01220,ko02020,map00642,map00910,map00920,map01100,map01120,map01220,map02020 M00529,M00530,M00804 R00798,R01106,R05745,R09497,R09500 RC00275,RC02555,RC02812 ko00000,ko00001,ko00002,ko01000,ko02000 5.A.3.1,5.A.3.8,5.A.3.9 - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding,TAT_signal QTD2_k127_5203812_0 330214.NIDE4384 1.107e-215 676.0 COG0397@1|root,COG0397@2|Bacteria 2|Bacteria S Uncharacterized ACR, YdiU/UPF0061 family ydiU - - ko:K08997 - - - - ko00000 - - - UPF0061 QTD2_k127_5203812_1 330214.NIDE4383 6.596e-185 617.0 COG0683@1|root,COG0683@2|Bacteria 2|Bacteria E ABC-type branched-chain amino acid transport systems, periplasmic component - - - - - - - - - - - - - QTD2_k127_5203812_2 330214.NIDE4382 7.676e-13 70.0 COG0400@1|root,COG0400@2|Bacteria,3J1DU@40117|Nitrospirae 40117|Nitrospirae S Alpha/beta hydrolase family - - - ko:K06999 - - - - ko00000 - - - Abhydrolase_2 QTD2_k127_523073_5 666685.R2APBS1_1126 4.788e-09 59.0 2EIBB@1|root,33C2R@2|Bacteria,1R3EG@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - QTD2_k127_523073_4 926556.Echvi_3001 1.003e-12 72.0 COG2149@1|root,COG2149@2|Bacteria,4NWFQ@976|Bacteroidetes,47SDS@768503|Cytophagia 976|Bacteroidetes S Domain of unknown function (DUF202) - - - ko:K00389 - - - - ko00000 - - - DUF202 QTD2_k127_523073_0 754476.Q7A_2839 3.083e-202 643.0 COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,1RR00@1236|Gammaproteobacteria,4601B@72273|Thiotrichales 72273|Thiotrichales EH Belongs to the TPP enzyme family - - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N QTD2_k127_523073_2 580332.Slit_1215 6.667e-57 201.0 28PZA@1|root,2ZCIS@2|Bacteria,1RCMD@1224|Proteobacteria,2VYEF@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_523073_1 290315.Clim_1144 1.133e-63 223.0 COG1803@1|root,COG1803@2|Bacteria 2|Bacteria G methylglyoxal synthase activity mgsA GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0008150,GO:0008152,GO:0008929,GO:0009058,GO:0009438,GO:0009987,GO:0016829,GO:0016835,GO:0016838,GO:0019242,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046184,GO:0071704,GO:1901576 4.2.3.3 ko:K01734 ko00640,ko01120,map00640,map01120 - R01016 RC00424 ko00000,ko00001,ko01000 - - iECUMN_1333.ECUMN_1153,iYL1228.KPN_00992 MGS QTD2_k127_523073_3 710421.Mycch_3710 5.372e-36 144.0 COG0477@1|root,COG0477@2|Bacteria,2GIYR@201174|Actinobacteria,233BF@1762|Mycobacteriaceae 201174|Actinobacteria EGP Major facilitator superfamily - - - ko:K03762 - - - - ko00000,ko02000 2.A.1.6.4 - - MFS_1,Sugar_tr QTD2_k127_5247087_0 243233.MCA0142 1.086e-118 391.0 COG0387@1|root,COG0387@2|Bacteria,1N1MR@1224|Proteobacteria,1S1GI@1236|Gammaproteobacteria 1236|Gammaproteobacteria P Sodium/calcium exchanger protein - - - ko:K07300 - - - - ko00000,ko02000 2.A.19 - - Na_Ca_ex QTD2_k127_5247087_1 330214.NIDE1853 6.653e-112 372.0 COG0635@1|root,COG0635@2|Bacteria,3J10W@40117|Nitrospirae 40117|Nitrospirae H Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - HemN_C,Radical_SAM QTD2_k127_5247087_4 330214.NIDE1855 3.868e-13 70.0 COG2331@1|root,COG2331@2|Bacteria 2|Bacteria P Regulatory protein, FmdB family - - - - - - - - - - - - Zn-ribbon_8 QTD2_k127_5257849_0 330214.NIDE1530 1.042e-117 388.0 COG0515@1|root,COG0515@2|Bacteria 330214.NIDE1530|- KLT protein kinase activity - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - - QTD2_k127_5257849_1 330214.NIDE1529 1.018e-73 256.0 COG0631@1|root,COG0631@2|Bacteria 2|Bacteria T protein serine/threonine phosphatase activity - - 3.1.3.16 ko:K01090,ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C,PP2C_2 QTD2_k127_5257849_2 330214.NIDE1528 2.712e-48 180.0 COG1716@1|root,COG1716@2|Bacteria 2|Bacteria T histone H2A K63-linked ubiquitination - - - - - - - - - - - - DUF4388,FHA,Yop-YscD_cpl QTD2_k127_5275609_2 756067.MicvaDRAFT_3420 5.239e-42 174.0 COG0823@1|root,COG2931@1|root,COG0823@2|Bacteria,COG2931@2|Bacteria,1G554@1117|Cyanobacteria,1HF7I@1150|Oscillatoriales 1117|Cyanobacteria QU PFAM Haemolysin-type calcium-binding repeat - - - - - - - - - - - - HemolysinCabind,PD40 QTD2_k127_5275609_3 234267.Acid_3536 1.95e-09 70.0 COG4257@1|root,COG4257@2|Bacteria,3Y9AI@57723|Acidobacteria 57723|Acidobacteria V Putative Ig domain - - - - - - - - - - - - He_PIG QTD2_k127_5275609_1 330214.NIDE1162 4.922e-90 304.0 COG0451@1|root,COG0451@2|Bacteria 2|Bacteria GM ADP-glyceromanno-heptose 6-epimerase activity yeeZ GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.5.5.1 ko:K00311 - - - - ko00000,ko01000 - - - Epimerase,NAD_binding_10 QTD2_k127_5275609_0 330214.NIDE1161 9.893e-103 342.0 COG1266@1|root,COG1633@1|root,COG1266@2|Bacteria,COG1633@2|Bacteria 2|Bacteria S Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - 1.16.3.1 ko:K03594,ko:K07052 ko00860,map00860 - R00078 RC02758 ko00000,ko00001,ko01000 - - - Abi QTD2_k127_5280_10 330214.NIDE2750 3.66e-48 174.0 COG2924@1|root,COG2924@2|Bacteria,3J1CU@40117|Nitrospirae 40117|Nitrospirae C Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - - - - - - - - - - Iron_traffic QTD2_k127_5280_6 330214.NIDE2751 3.787e-76 257.0 COG1259@1|root,COG1259@2|Bacteria,3J0RC@40117|Nitrospirae 40117|Nitrospirae S Bifunctional nuclease - - - ko:K08999 - - - - ko00000 - - - DNase-RNase QTD2_k127_5280_9 330214.NIDE2752 1.605e-52 190.0 COG1259@1|root,COG1259@2|Bacteria,3J0RC@40117|Nitrospirae 2|Bacteria S Bifunctional nuclease - GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - ko:K03617,ko:K08999 - - - - ko00000 - - - DNase-RNase,UVR QTD2_k127_5280_7 330214.NIDE2753 2.558e-66 228.0 COG0102@1|root,COG0102@2|Bacteria,3J0NE@40117|Nitrospirae 40117|Nitrospirae J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly rplM - - ko:K02871 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L13 QTD2_k127_5280_8 330214.NIDE2754 1.703e-56 199.0 COG0103@1|root,COG0103@2|Bacteria,3J0N4@40117|Nitrospirae 40117|Nitrospirae J Belongs to the universal ribosomal protein uS9 family rpsI - - ko:K02996 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S9 QTD2_k127_5280_1 330214.NIDE2755 1.514e-161 516.0 COG0002@1|root,COG0002@2|Bacteria,3J0H9@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde argC - 1.2.1.38 ko:K00145 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R03443 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC QTD2_k127_5280_0 330214.NIDE2756 2.731e-168 538.0 COG1364@1|root,COG1364@2|Bacteria,3J0B5@40117|Nitrospirae 40117|Nitrospirae E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate argJ - 2.3.1.1,2.3.1.35 ko:K00620 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R00259,R02282 RC00004,RC00064 ko00000,ko00001,ko00002,ko01000 - - - ArgJ QTD2_k127_5280_2 330214.NIDE2757 7.884e-131 421.0 COG0052@1|root,COG0052@2|Bacteria,3J0G9@40117|Nitrospirae 40117|Nitrospirae J Belongs to the universal ribosomal protein uS2 family rpsB GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02967 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S2 QTD2_k127_5280_4 330214.NIDE2758 9.518e-107 347.0 COG0264@1|root,COG0264@2|Bacteria,3J0I2@40117|Nitrospirae 40117|Nitrospirae J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome tsf GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - ko:K02357 - - - - ko00000,ko03012,ko03029 - - - EF_TS QTD2_k127_5280_3 330214.NIDE2759 1.2e-127 414.0 COG0528@1|root,COG0528@2|Bacteria,3J0BE@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the reversible phosphorylation of UMP to UDP pyrH - 2.7.4.22 ko:K09903 ko00240,ko01100,map00240,map01100 - R00158 RC00002 ko00000,ko00001,ko01000 - - - AA_kinase QTD2_k127_5280_5 330214.NIDE2760 7.652e-89 297.0 COG0233@1|root,COG0233@2|Bacteria,3J0KJ@40117|Nitrospirae 40117|Nitrospirae J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another frr - - ko:K02838 - - - - ko00000,ko03012 - - - RRF QTD2_k127_5294873_0 330214.NIDE1441 3.787e-183 576.0 COG2041@1|root,COG2041@2|Bacteria 2|Bacteria V Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide nia - 1.8.3.1 ko:K00387 ko00920,ko01100,ko01120,map00920,map01100,map01120 - R00533 RC00168 ko00000,ko00001,ko01000 - - - Mo-co_dimer,Oxidored_molyb QTD2_k127_5294873_1 1266925.JHVX01000003_gene660 8.602e-17 93.0 COG2913@1|root,COG2913@2|Bacteria,1NEFQ@1224|Proteobacteria,2W3DU@28216|Betaproteobacteria,373D5@32003|Nitrosomonadales 28216|Betaproteobacteria J Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - - - - - - - - - - - QTD2_k127_5348921_4 330214.NIDE0232 9.447e-206 648.0 COG3383@1|root,COG3383@2|Bacteria,3J0UR@40117|Nitrospirae 2|Bacteria C Molydopterin dinucleotide binding domain hcnA - 1.4.99.5,1.5.3.1 ko:K00302,ko:K10814 ko00260,ko00460,ko01100,ko01110,map00260,map00460,map01100,map01110 - R00374,R00610,R05704 RC00060,RC00557,RC02808 ko00000,ko00001,ko01000,ko02042 - - - Fer2_4 QTD2_k127_5348921_5 330214.NIDE0231 2.897e-116 376.0 COG1143@1|root,COG1143@2|Bacteria,3J0N0@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00338 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer4 QTD2_k127_5348921_6 330214.NIDE0230 4.48e-76 258.0 COG0839@1|root,COG0839@2|Bacteria 2|Bacteria C Belongs to the complex I subunit 6 family nuoJ - 1.6.5.3 ko:K00339 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q3 QTD2_k127_5348921_7 330214.NIDE0229 2.499e-45 165.0 COG0713@1|root,COG0713@2|Bacteria,3J1AK@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00340 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q2 QTD2_k127_5348921_0 330214.NIDE0228 0.0 1028.0 COG1009@1|root,COG1009@2|Bacteria,3J0AN@40117|Nitrospirae 40117|Nitrospirae CP NADH-quinone oxidoreductase - - 1.6.5.3 ko:K00341,ko:K05568,ko:K12139 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000,ko02000 2.A.63.1,2.A.63.2,3.D.1 - - Proton_antipo_M,Proton_antipo_N QTD2_k127_5348921_2 330214.NIDE0227 1.63e-270 839.0 COG1008@1|root,COG1008@2|Bacteria,3J0EQ@40117|Nitrospirae 2|Bacteria C Evidence 2a Function of homologous gene experimentally demonstrated in an other organism nuoM GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 ko:K00342 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M QTD2_k127_5348921_1 330214.NIDE0226 1.055e-290 900.0 COG1008@1|root,COG1008@2|Bacteria,3J0EQ@40117|Nitrospirae 2|Bacteria C Evidence 2a Function of homologous gene experimentally demonstrated in an other organism ndhD - 1.6.5.3 ko:K00342,ko:K05575 ko00190,ko01100,map00190,map01100 M00144,M00145 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - iJN678.ndhD2 Oxidored_q5_N,Proton_antipo_M QTD2_k127_5348921_3 330214.NIDE0225 6.402e-258 801.0 COG1007@1|root,COG1007@2|Bacteria,3J0FN@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M QTD2_k127_5363032_1 330214.NIDE3392 2.442e-35 135.0 COG1449@1|root,COG1449@2|Bacteria,3J0AQ@40117|Nitrospirae 40117|Nitrospirae G Glycosyl hydrolase family 57 - - - - - - - - - - - - Glyco_hydro_57 QTD2_k127_5363032_2 330214.NIDE3391 1.685e-28 120.0 COG5652@1|root,COG5652@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - VanZ QTD2_k127_5363032_0 330214.NIDE3389 1.515e-98 329.0 COG3178@1|root,COG3178@2|Bacteria,3J15Y@40117|Nitrospirae 40117|Nitrospirae S Phosphotransferase enzyme family - - 2.7.1.221 ko:K07102 ko00520,ko01100,map00520,map01100 - R08968,R11024 RC00002,RC00078 ko00000,ko00001,ko01000 - - - APH QTD2_k127_5390567_3 472759.Nhal_2235 1.421e-54 202.0 COG0224@1|root,COG0224@2|Bacteria,1RIE5@1224|Proteobacteria,1S3ZW@1236|Gammaproteobacteria 1236|Gammaproteobacteria C ATP synthase gamma subunit - - - ko:K02115 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt QTD2_k127_5390567_0 1131553.JIBI01000039_gene1942 3.56e-211 666.0 COG0056@1|root,COG0056@2|Bacteria,1MVHM@1224|Proteobacteria,2VPGJ@28216|Betaproteobacteria,3728R@32003|Nitrosomonadales 28216|Betaproteobacteria F Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit atpA2 - 3.6.3.14 ko:K02111 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N QTD2_k127_5390567_2 472759.Nhal_2237 7.713e-57 206.0 COG0711@1|root,COG0712@1|root,COG0711@2|Bacteria,COG0712@2|Bacteria,1R6C0@1224|Proteobacteria,1S4NA@1236|Gammaproteobacteria 1236|Gammaproteobacteria C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) - - - ko:K02109 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_B,OSCP QTD2_k127_5390567_4 1283284.AZUK01000002_gene2799 1.048e-33 133.0 COG0636@1|root,COG0636@2|Bacteria,1NAIE@1224|Proteobacteria,1SA80@1236|Gammaproteobacteria 1236|Gammaproteobacteria C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation - - - ko:K02110 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_C QTD2_k127_5390567_1 472759.Nhal_2239 5.737e-87 292.0 COG0356@1|root,COG0356@2|Bacteria,1RBEV@1224|Proteobacteria,1T170@1236|Gammaproteobacteria 1236|Gammaproteobacteria C it plays a direct role in the translocation of protons across the membrane - - - ko:K02108 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko03110 3.A.2.1 - - ATP-synt_A QTD2_k127_5390567_6 1121403.AUCV01000038_gene4231 1.839e-29 121.0 2E70X@1|root,331JP@2|Bacteria,1N81S@1224|Proteobacteria 1224|Proteobacteria S Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - ko:K02116 - - - - ko00000,ko00194 3.A.2.1 - - ATPase_gene1 QTD2_k127_5390567_5 472759.Nhal_2241 3.239e-33 131.0 COG0355@1|root,COG0355@2|Bacteria,1N1NE@1224|Proteobacteria,1S9B5@1236|Gammaproteobacteria 1236|Gammaproteobacteria C epsilon subunit - - - ko:K02114 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_DE_N QTD2_k127_5396316_2 330214.NIDE0010 6.023e-121 394.0 COG1741@1|root,COG1741@2|Bacteria,3J125@40117|Nitrospirae 40117|Nitrospirae S Pirin - - - ko:K06911 - - - - ko00000 - - - Pirin,Pirin_C QTD2_k127_5396316_9 330214.NIDE0011 3.735e-76 263.0 COG2761@1|root,COG2761@2|Bacteria 2|Bacteria Q protein disulfide oxidoreductase activity - - - - - - - - - - - - DSBA QTD2_k127_5396316_8 330214.NIDE0012 5.6e-78 261.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity fosB2 - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase QTD2_k127_5396316_12 670292.JH26_05880 1.914e-58 207.0 297W1@1|root,2ZV2M@2|Bacteria,1QN4J@1224|Proteobacteria,2U80H@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Domain of unknown function (DUF4396) - - - - - - - - - - - - DUF4396 QTD2_k127_5396316_7 330214.NIDE0016 1.04e-84 281.0 COG2514@1|root,COG2514@2|Bacteria 2|Bacteria S catechol 2,3-dioxygenase activity - - 1.13.11.2 ko:K07104 ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220 M00569 R00816,R04089,R05295,R05404,R05406,R07795 RC00387,RC00643,RC01075,RC01364,RC01914 ko00000,ko00001,ko00002,ko01000 - - - Glyoxalase QTD2_k127_5396316_11 1336233.JAEH01000055_gene4125 1.522e-59 218.0 COG0491@1|root,COG0491@2|Bacteria,1PBSA@1224|Proteobacteria,1SWGM@1236|Gammaproteobacteria,2QE2R@267890|Shewanellaceae 1236|Gammaproteobacteria S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B QTD2_k127_5396316_1 234267.Acid_7913 4.648e-207 664.0 COG2203@1|root,COG3604@1|root,COG2203@2|Bacteria,COG3604@2|Bacteria,3Y9A3@57723|Acidobacteria 57723|Acidobacteria KT Sigma-54 interaction domain - - - ko:K15836 - - - - ko00000,ko03000 - - - GAF_2,GAF_3,HTH_8,Sigma54_activat QTD2_k127_5396316_3 330214.NIDE3496 5.55e-104 350.0 COG0586@1|root,COG0607@1|root,COG0586@2|Bacteria,COG0607@2|Bacteria,3J1E4@40117|Nitrospirae 40117|Nitrospirae P Evidence 4 Homologs of previously reported genes of - - - ko:K03975 - - - - ko00000 - - - Rhodanese,SNARE_assoc QTD2_k127_5396316_6 330214.NIDE0049 2.6e-95 319.0 COG1028@1|root,COG1028@2|Bacteria,3J0J6@40117|Nitrospirae 330214.NIDE0049|- IQ Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - - QTD2_k127_5396316_13 382464.ABSI01000011_gene2994 2.368e-47 181.0 2DQ7E@1|root,3353C@2|Bacteria,46SU5@74201|Verrucomicrobia,2IUQR@203494|Verrucomicrobiae 203494|Verrucomicrobiae S Domain of unknown function (DUF5069) - - - - - - - - - - - - DUF5069 QTD2_k127_5396316_10 2002.JOEQ01000074_gene6426 5.087e-63 222.0 COG1917@1|root,COG1917@2|Bacteria,2IIQD@201174|Actinobacteria,4EJQH@85012|Streptosporangiales 201174|Actinobacteria S Cupin domain - - - - - - - - - - - - Cupin_2 QTD2_k127_5396316_4 1173022.Cri9333_0733 3.663e-98 327.0 COG0426@1|root,COG0426@2|Bacteria,1GC5X@1117|Cyanobacteria 1117|Cyanobacteria C domain, Protein - - - - - - - - - - - - - QTD2_k127_5396316_0 330214.NIDE3487 1.033e-208 656.0 COG4941@1|root,COG4941@2|Bacteria 2|Bacteria K sigma factor activity - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 QTD2_k127_5396316_14 330214.NIDE3484 2.932e-34 135.0 COG3795@1|root,COG3795@2|Bacteria 2|Bacteria F YCII-related domain - - - - - - - - - - - - YCII QTD2_k127_5396316_5 497964.CfE428DRAFT_5965 1.726e-96 321.0 COG4312@1|root,COG4312@2|Bacteria,46U2I@74201|Verrucomicrobia 74201|Verrucomicrobia S Bacterial protein of unknown function (DUF899) - - - - - - - - - - - - DUF899 QTD2_k127_5418547_0 330214.NIDE0004 0.0 1401.0 COG0188@1|root,COG0188@2|Bacteria,3J0EH@40117|Nitrospirae 40117|Nitrospirae L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrA - 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV QTD2_k127_5418547_1 243231.GSU0003 5.543e-293 920.0 COG0187@1|root,COG0187@2|Bacteria,1MVKT@1224|Proteobacteria,42M7M@68525|delta/epsilon subdivisions,2WJ9X@28221|Deltaproteobacteria,43U22@69541|Desulfuromonadales 28221|Deltaproteobacteria L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrB - 5.99.1.3 ko:K02470 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim QTD2_k127_5418547_3 330214.NIDE0002 2.888e-202 634.0 COG0592@1|root,COG0592@2|Bacteria,3J0RU@40117|Nitrospirae 40117|Nitrospirae L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria dnaN - 2.7.7.7 ko:K02338 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3 QTD2_k127_5418547_5 1232410.KI421422_gene2035 3.564e-145 472.0 COG0593@1|root,COG0593@2|Bacteria,1MU5H@1224|Proteobacteria,42MA0@68525|delta/epsilon subdivisions,2WJAT@28221|Deltaproteobacteria,43RXU@69541|Desulfuromonadales 28221|Deltaproteobacteria L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids dnaA GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - ko:K02313 ko02020,ko04112,map02020,map04112 - - - ko00000,ko00001,ko03032,ko03036 - - - Bac_DnaA,Bac_DnaA_C,DnaA_N QTD2_k127_5418547_8 330214.NIDE4398 2.144e-41 154.0 COG1553@1|root,COG1553@2|Bacteria,3J1AA@40117|Nitrospirae 40117|Nitrospirae P Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE - - - - - - - - - - - - - QTD2_k127_5418547_4 330214.NIDE4397 1.247e-199 629.0 COG0124@1|root,COG0124@2|Bacteria,3J0EC@40117|Nitrospirae 40117|Nitrospirae J Histidyl-tRNA synthetase hisS - 6.1.1.21 ko:K01892 ko00970,map00970 M00359,M00360 R03655 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_His QTD2_k127_5418547_2 330214.NIDE4396 1.999e-268 832.0 COG1351@1|root,COG1351@2|Bacteria 2|Bacteria F thymidylate synthase (FAD) activity thyX - 2.1.1.148 ko:K03465 ko00240,ko00670,ko01100,map00240,map00670,map01100 - R06613 RC00022,RC00332 ko00000,ko00001,ko01000 - - - Thy1 QTD2_k127_5418547_6 330214.NIDE4395 4.704e-142 460.0 COG0457@1|root,COG0457@2|Bacteria,3J1CG@40117|Nitrospirae 330214.NIDE4395|- S Evidence 5 No homology to any previously reported sequences - - - - - - - - - - - - - QTD2_k127_5424318_0 880072.Desac_2171 1.54e-136 459.0 COG0417@1|root,COG0417@2|Bacteria 2|Bacteria L DNA replication proofreading polB - 2.7.7.7 ko:K02336,ko:K06877 - - - - ko00000,ko01000,ko03400 - - - CarbopepD_reg_2,DNA_pol_B,DNA_pol_B_exo1,RNase_H_2 QTD2_k127_5424318_2 56780.SYN_00736 1.819e-08 63.0 COG3065@1|root,COG3065@2|Bacteria,1MZ8C@1224|Proteobacteria,42TQE@68525|delta/epsilon subdivisions,2WQIC@28221|Deltaproteobacteria,2MSI1@213462|Syntrophobacterales 28221|Deltaproteobacteria M Outer membrane lipoprotein Slp family - - - ko:K07285 - - - - ko00000 - - - Slp QTD2_k127_5424318_3 411477.PARMER_03841 0.0001857 44.0 2DYWV@1|root,34BGY@2|Bacteria,4P5KJ@976|Bacteroidetes,2FVUW@200643|Bacteroidia 976|Bacteroidetes - - - - - - - - - - - - - - - QTD2_k127_5425262_4 1340493.JNIF01000003_gene3664 4.18e-06 49.0 COG1404@1|root,COG1404@2|Bacteria,3Y5WB@57723|Acidobacteria 57723|Acidobacteria O PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - - - - - - - - - - PA,Peptidase_S8 QTD2_k127_5425262_2 443143.GM18_0926 4.997e-29 131.0 COG4191@1|root,COG4191@2|Bacteria,1QUMH@1224|Proteobacteria,42MM2@68525|delta/epsilon subdivisions,2WJBF@28221|Deltaproteobacteria 28221|Deltaproteobacteria T PFAM ATP-binding region, ATPase domain protein - - - - - - - - - - - - HATPase_c,HisKA QTD2_k127_5425262_3 649638.Trad_2627 2.031e-18 94.0 COG0457@1|root,COG0457@2|Bacteria,1WI6W@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S Tetratricopeptide repeat - - - - - - - - - - - - TPR_16,TPR_17 QTD2_k127_5425262_1 330214.NIDE3393 4.21e-191 599.0 COG1085@1|root,COG1085@2|Bacteria,3J0ER@40117|Nitrospirae 40117|Nitrospirae H Galactose-1-phosphate uridyl transferase, N-terminal domain galT - 2.7.7.12 ko:K00965 ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917 M00362,M00554,M00632 R00955 RC00002 ko00000,ko00001,ko00002,ko01000 - - - GalP_UDP_tr_C,GalP_UDP_transf QTD2_k127_5425262_0 330214.NIDE3392 4.615e-321 994.0 COG1449@1|root,COG1449@2|Bacteria,3J0AQ@40117|Nitrospirae 40117|Nitrospirae G Glycosyl hydrolase family 57 - - - - - - - - - - - - Glyco_hydro_57 QTD2_k127_5437524_5 330214.NIDE2540 9.736e-144 458.0 COG0044@1|root,COG0044@2|Bacteria,3J0D7@40117|Nitrospirae 40117|Nitrospirae F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily pyrC - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 QTD2_k127_5437524_7 330214.NIDE2540 1.012e-81 273.0 COG0044@1|root,COG0044@2|Bacteria,3J0D7@40117|Nitrospirae 40117|Nitrospirae F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily pyrC - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 QTD2_k127_5437524_4 330214.NIDE2539 5.127e-167 528.0 COG0540@1|root,COG0540@2|Bacteria,3J0FJ@40117|Nitrospirae 40117|Nitrospirae F Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain pyrB - 2.1.3.2 ko:K00609 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R01397 RC00064,RC02850 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N QTD2_k127_5437524_6 330214.NIDE2538 2.592e-89 299.0 COG2065@1|root,COG2065@2|Bacteria,3J0JX@40117|Nitrospirae 40117|Nitrospirae F Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant pyrR - 2.4.2.9 ko:K02825 ko00240,ko01100,map00240,map01100 - R00966 RC00063 ko00000,ko00001,ko01000,ko03000 - - - Pribosyltran QTD2_k127_5437524_2 330214.NIDE2818 4.777e-179 578.0 2F0JI@1|root,33TN8@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_5437524_1 330214.NIDE2819 1.017e-211 664.0 COG0014@1|root,COG0014@2|Bacteria,3J0ET@40117|Nitrospirae 40117|Nitrospirae E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate proA GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 ko:K00147 ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230 M00015 R03313 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Aldedh QTD2_k127_5437524_3 330214.NIDE2870 6.327e-174 550.0 COG0451@1|root,COG0451@2|Bacteria,3J0BW@40117|Nitrospirae 40117|Nitrospirae M 3-beta hydroxysteroid dehydrogenase/isomerase family - - 4.1.1.35,4.2.1.46 ko:K01710,ko:K08678 ko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00520,map00521,map00523,map00525,map01055,map01100,map01130 M00361,M00793 R01384,R06513 RC00402,RC00508 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd QTD2_k127_5437524_9 330214.NIDE2820 1.212e-62 222.0 COG2165@1|root,COG2165@2|Bacteria 2|Bacteria NU general secretion pathway protein tklG - - ko:K10927 ko05111,map05111 - - - ko00000,ko00001,ko02044 - - - - QTD2_k127_5437524_11 330214.NIDE2823 1.031e-56 204.0 COG3166@1|root,COG3166@2|Bacteria 2|Bacteria NU PFAM Fimbrial assembly family protein pilN - - ko:K02461,ko:K02662,ko:K02663,ko:K12289 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15 - - PilN QTD2_k127_5437524_8 330214.NIDE2824 2.532e-80 278.0 COG4972@1|root,COG4972@2|Bacteria 2|Bacteria NU Pilus assembly protein - - - ko:K02662 - - - - ko00000,ko02035,ko02044 - - - PilM_2 QTD2_k127_5437524_0 330214.NIDE2825 1.679e-302 937.0 COG2804@1|root,COG2804@2|Bacteria,3J0XR@40117|Nitrospirae 2|Bacteria NU Type II/IV secretion system protein gspE - - ko:K02454,ko:K02652 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - T2SSE,T2SSE_N QTD2_k127_5437524_12 330214.NIDE2826 1.576e-23 100.0 COG1459@1|root,COG1459@2|Bacteria,3J0HZ@40117|Nitrospirae 40117|Nitrospirae U Type II secretion system (T2SS), protein F - - - ko:K02455,ko:K02653 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - T2SSF QTD2_k127_5491403_1 1163617.SCD_n02890 1.164e-81 278.0 COG0500@1|root,COG2226@2|Bacteria,1RFDN@1224|Proteobacteria,2W4ZV@28216|Betaproteobacteria 28216|Betaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - Methyltransf_11 QTD2_k127_5491403_0 1163617.SCD_n02891 1.636e-211 670.0 COG0500@1|root,COG1215@1|root,COG1215@2|Bacteria,COG2226@2|Bacteria 2|Bacteria Q methyltransferase - - - - - - - - - - - - Glycos_transf_2,Methyltransf_11,Methyltransf_23,Methyltransf_25,Methyltransf_31 QTD2_k127_5491403_2 391612.CY0110_11832 8.057e-30 132.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase yrrT GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464 4.4.1.21 ko:K07173,ko:K17462 ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111 M00609 R01291,R10404 RC00003,RC00069,RC01929 ko00000,ko00001,ko00002,ko01000 - - - MerR_1,Methyltransf_11,Methyltransf_23,Methyltransf_25 QTD2_k127_551386_5 330214.NIDE2260 5.257e-63 219.0 COG0606@1|root,COG0606@2|Bacteria,3J0ZK@40117|Nitrospirae 40117|Nitrospirae O Magnesium chelatase, subunit ChlI C-terminal - - - ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C QTD2_k127_551386_0 330214.NIDE2263 0.0 1360.0 COG0542@1|root,COG0542@2|Bacteria,3J0AV@40117|Nitrospirae 40117|Nitrospirae O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpB - - ko:K03695 ko04213,map04213 - - - ko00000,ko00001,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N QTD2_k127_551386_2 330214.NIDE2265 1.125e-199 633.0 COG2770@1|root,COG5002@1|root,COG2770@2|Bacteria,COG5002@2|Bacteria,3J10G@40117|Nitrospirae 40117|Nitrospirae T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - 2.7.13.3 ko:K07711 ko02020,ko02024,map02020,map02024 M00502 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA QTD2_k127_551386_4 330214.NIDE2266 1.77e-74 259.0 COG2433@1|root,COG2433@2|Bacteria 2|Bacteria - - yttA - 2.7.13.3 ko:K07184,ko:K07777,ko:K12065,ko:K13527 ko02020,ko03050,map02020,map03050 M00342,M00478 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02044,ko03051 3.A.7.11.1 - - DUF3102,DUF3450 QTD2_k127_551386_1 330214.NIDE2267 2.575e-232 728.0 COG2204@1|root,COG2204@2|Bacteria,3J0ZU@40117|Nitrospirae 40117|Nitrospirae T Bacterial regulatory protein, Fis family - - - ko:K07715 ko02020,ko02024,map02020,map02024 M00502 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_5531110_9 330214.NIDE4282 1.391e-15 81.0 COG0612@1|root,COG0612@2|Bacteria,3J0I5@40117|Nitrospirae 2|Bacteria S Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology ymxG - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C QTD2_k127_5531110_1 330214.NIDE4283 3.265e-246 769.0 COG0612@1|root,COG0612@2|Bacteria,3J0BY@40117|Nitrospirae 2|Bacteria S Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology pqqL - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C QTD2_k127_5531110_4 330214.NIDE4284 5.786e-110 363.0 COG0546@1|root,COG0546@2|Bacteria,3J0QE@40117|Nitrospirae 40117|Nitrospirae S HAD-hyrolase-like - - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 QTD2_k127_5531110_2 330214.NIDE4286 5.631e-215 677.0 COG0469@1|root,COG0469@2|Bacteria,3J0XM@40117|Nitrospirae 40117|Nitrospirae G Belongs to the pyruvate kinase family - - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C QTD2_k127_5531110_0 330214.NIDE4287 0.0 1193.0 COG0205@1|root,COG0406@1|root,COG0205@2|Bacteria,COG0406@2|Bacteria 2|Bacteria G alpha-ribazole phosphatase activity pfkA - 2.7.1.11,2.7.1.90 ko:K00850,ko:K21071 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230 M00001,M00345 R00756,R00764,R02073,R03236,R03237,R03238,R03239,R04779 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000,ko01009,ko03019 - - - His_Phos_1,PFK QTD2_k127_5531110_8 330214.NIDE4288 3.8e-29 122.0 COG4290@1|root,COG4290@2|Bacteria 2|Bacteria F endoribonuclease activity - GO:0005575,GO:0005576 - ko:K03628,ko:K15125 ko03018,ko05133,map03018,map05133 - - - ko00000,ko00001,ko00536,ko03019,ko03021 - - - Ribonuclease QTD2_k127_5531110_6 330214.NIDE4289 1.139e-42 163.0 COG2732@1|root,COG2732@2|Bacteria 2|Bacteria K (Barnase) inhibitor - - - - - - - - - - - - Barstar QTD2_k127_5531110_3 330214.NIDE4293 3.441e-212 666.0 COG0001@1|root,COG0001@2|Bacteria,3J0B3@40117|Nitrospirae 40117|Nitrospirae H Aminotransferase class-III hemL - 5.4.3.8 ko:K01845 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02272 RC00677 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 QTD2_k127_553125_3 330214.NIDE0488 8.494e-182 573.0 COG0019@1|root,COG0019@2|Bacteria,3J0CR@40117|Nitrospirae 40117|Nitrospirae E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine lysA - 4.1.1.20 ko:K01586 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R00451 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N,Orn_DAP_Arg_deC QTD2_k127_553125_7 1499967.BAYZ01000080_gene917 1.584e-140 468.0 COG1032@1|root,COG1032@2|Bacteria,2NQU0@2323|unclassified Bacteria 2|Bacteria C Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - B12-binding,DUF4070,Radical_SAM QTD2_k127_553125_1 330214.NIDE0486 1.438e-203 642.0 COG0165@1|root,COG0165@2|Bacteria,3J0EN@40117|Nitrospirae 40117|Nitrospirae E Argininosuccinate lyase C-terminal argH - 4.3.2.1 ko:K01755 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230 M00029,M00844,M00845 R01086 RC00445,RC00447 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ASL_C2,Lyase_1 QTD2_k127_553125_0 330214.NIDE0485 4.272e-230 717.0 COG0137@1|root,COG0137@2|Bacteria,3J0BU@40117|Nitrospirae 40117|Nitrospirae E Belongs to the argininosuccinate synthase family. Type 1 subfamily argG - 6.3.4.5 ko:K01940 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418 M00029,M00844,M00845 R01954 RC00380,RC00629 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Arginosuc_synth QTD2_k127_553125_5 330214.NIDE0484 9.493e-153 487.0 COG0078@1|root,COG0078@2|Bacteria,3J0G7@40117|Nitrospirae 40117|Nitrospirae E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline argF - 2.1.3.3 ko:K00611 ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230 M00029,M00844 R01398 RC00096 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N QTD2_k127_553125_2 330214.NIDE0483 1.591e-201 634.0 COG4992@1|root,COG4992@2|Bacteria,3J0AB@40117|Nitrospirae 40117|Nitrospirae E Aminotransferase class-III argD - 2.6.1.11,2.6.1.17 ko:K00821 ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00028,M00845 R02283,R04475 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 QTD2_k127_553125_12 330214.NIDE0482 9.871e-67 235.0 COG4969@1|root,COG4969@2|Bacteria 2|Bacteria NU cell adhesion pilA - - ko:K02650 ko02020,map02020 - - - ko00000,ko00001,ko02035,ko02044 3.A.15.2 - - DUF2628,N_methyl,Pilin QTD2_k127_553125_10 330214.NIDE0478 2.157e-110 363.0 COG0588@1|root,COG0588@2|Bacteria,3J118@40117|Nitrospirae 40117|Nitrospirae G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate gpmA - 5.4.2.11 ko:K01834 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - His_Phos_1 QTD2_k127_553125_4 330214.NIDE0474 2.02e-177 561.0 COG1181@1|root,COG1181@2|Bacteria 2|Bacteria F Belongs to the D-alanine--D-alanine ligase family ddlB1 - 6.3.2.4,6.3.5.5 ko:K01921,ko:K01955 ko00240,ko00250,ko00473,ko00550,ko01100,ko01502,map00240,map00250,map00473,map00550,map01100,map01502 M00051 R00256,R00575,R01150,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC00064,RC00141,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000,ko01011 - - - Dala_Dala_lig_C QTD2_k127_553125_6 330214.NIDE0473 6.387e-152 488.0 COG4307@1|root,COG4307@2|Bacteria 2|Bacteria T Protein conserved in bacteria - - - - - - - - - - - - Peptidase_Mx,zinc-ribbon_6 QTD2_k127_553125_14 330214.NIDE0472 5.387e-49 179.0 COG0394@1|root,COG0394@2|Bacteria 2|Bacteria T Belongs to the low molecular weight phosphotyrosine protein phosphatase family arsC - 1.20.4.1,3.1.3.48 ko:K01104,ko:K03741 - - - - ko00000,ko01000 - - - FMN_red,LMWPc QTD2_k127_553125_8 330214.NIDE0471 9.831e-131 423.0 COG0037@1|root,COG0037@2|Bacteria 2|Bacteria D tRNA processing ttcA GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 2.8.1.15,6.3.4.19 ko:K04075,ko:K14058,ko:K21947 - - R09597 RC02633,RC02634 ko00000,ko01000,ko03016 - - - ATP_bind_3 QTD2_k127_553125_11 330214.NIDE0469 4.32e-85 287.0 COG0225@1|root,COG0225@2|Bacteria,3J12A@40117|Nitrospirae 40117|Nitrospirae C Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine - - 1.8.4.11 ko:K07304 - - - - ko00000,ko01000 - - - PMSR QTD2_k127_553125_13 330214.NIDE0460 5.392e-54 198.0 COG2885@1|root,COG2885@2|Bacteria,3J17Q@40117|Nitrospirae 2|Bacteria M Belongs to the ompA family pal - - ko:K03640 - - - - ko00000,ko02000 2.C.1.2 - - OmpA QTD2_k127_5547933_8 330214.NIDE2202 5.392e-15 77.0 COG3118@1|root,COG3118@2|Bacteria 2|Bacteria O belongs to the thioredoxin family - - 1.8.1.9 ko:K00384,ko:K03671 ko00450,ko04621,ko05418,map00450,map04621,map05418 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000,ko03110 - - - Thioredoxin QTD2_k127_5547933_5 330214.NIDE2201 1.076e-70 250.0 COG2755@1|root,COG2755@2|Bacteria 2|Bacteria E lipolytic protein G-D-S-L family - - - - - - - - - - - - Lipase_GDSL_2 QTD2_k127_5547933_2 330214.NIDE2200 6.129e-197 632.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT_2,PT-HINT,Sulfatase QTD2_k127_5547933_0 330214.NIDE2199 2.42e-236 743.0 COG2206@1|root,COG2206@2|Bacteria,3J14V@40117|Nitrospirae 40117|Nitrospirae T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - DUF3391,HD QTD2_k127_5547933_4 330214.NIDE2197 3.936e-72 249.0 COG2825@1|root,COG2825@2|Bacteria,3J1AH@40117|Nitrospirae 40117|Nitrospirae M Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K06142 - - - - ko00000 - - - OmpH QTD2_k127_5547933_7 261292.Nit79A3_1082 1.148e-54 195.0 COG0607@1|root,COG0607@2|Bacteria,1PE8D@1224|Proteobacteria,2WC5X@28216|Betaproteobacteria,374CH@32003|Nitrosomonadales 28216|Betaproteobacteria P Rhodanese-like domain - - - - - - - - - - - - Rhodanese QTD2_k127_5547933_3 330214.NIDE2194 1.29e-147 474.0 COG1533@1|root,COG1533@2|Bacteria,3J0QV@40117|Nitrospirae 40117|Nitrospirae L Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - Radical_SAM QTD2_k127_5547933_1 330214.NIDE2193 1.302e-213 669.0 COG0172@1|root,COG0172@2|Bacteria,3J0EP@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b QTD2_k127_5547933_6 177437.HRM2_20860 2.145e-66 245.0 COG0582@1|root,COG0582@2|Bacteria,1MWBN@1224|Proteobacteria,42Q95@68525|delta/epsilon subdivisions,2WKM2@28221|Deltaproteobacteria,2MIMV@213118|Desulfobacterales 28221|Deltaproteobacteria L Phage integrase family - - - - - - - - - - - - Phage_int_SAM_5,Phage_integrase QTD2_k127_5547933_11 1171373.PACID_10730 9.63e-07 57.0 COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,2IAHV@201174|Actinobacteria,4DUEP@85009|Propionibacteriales 201174|Actinobacteria L Winged helix-turn helix - - - - - - - - - - - - DDE_3,HTH_28,HTH_32,HTH_33 QTD2_k127_5547933_9 1536769.P40081_27770 8.565e-12 72.0 COG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1V41H@1239|Firmicutes,4HH52@91061|Bacilli,26WF4@186822|Paenibacillaceae 91061|Bacilli L Winged helix-turn helix - - - - - - - - - - - - DDE_3,HTH_23,HTH_33 QTD2_k127_5547933_10 96561.Dole_3153 4.444e-11 65.0 COG0582@1|root,COG0582@2|Bacteria 2|Bacteria L DNA integration - - - - - - - - - - - - Phage_integrase QTD2_k127_554888_3 1210884.HG799464_gene10383 8.448e-31 123.0 COG1023@1|root,COG1023@2|Bacteria,2IYCD@203682|Planctomycetes 203682|Planctomycetes G 6-phosphogluconate dehydrogenase, C-terminal domain - - 1.1.1.343,1.1.1.44 ko:K00033 ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200 M00004,M00006 R01528,R10221 RC00001,RC00539 ko00000,ko00001,ko00002,ko01000 - - - 6PGD,NAD_binding_2 QTD2_k127_554888_0 1232410.KI421426_gene1491 2.863e-291 900.0 COG0166@1|root,COG0166@2|Bacteria,1MUFP@1224|Proteobacteria,42MNB@68525|delta/epsilon subdivisions,2WJ0I@28221|Deltaproteobacteria,43S3J@69541|Desulfuromonadales 28221|Deltaproteobacteria F Phosphoglucose isomerase pgi - 5.3.1.9 ko:K01810 ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200 M00001,M00004,M00114 R02739,R02740,R03321 RC00376,RC00563 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGI QTD2_k127_554888_5 1500897.JQNA01000002_gene4501 0.0005502 47.0 COG0745@1|root,COG2199@1|root,COG4251@1|root,COG0745@2|Bacteria,COG3706@2|Bacteria,COG4251@2|Bacteria,1R7HC@1224|Proteobacteria,2W0FN@28216|Betaproteobacteria,1KIH5@119060|Burkholderiaceae 28216|Betaproteobacteria T GAF domain - - - - - - - - - - - - CHASE3,GAF_2,HATPase_c,HisKA,Response_reg QTD2_k127_554888_2 338966.Ppro_0397 9.234e-74 256.0 2DKXW@1|root,30TMD@2|Bacteria,1R3IE@1224|Proteobacteria 1224|Proteobacteria S Domain of unknown function (DUF4410) - - - - - - - - - - - - DUF4410 QTD2_k127_554888_1 344747.PM8797T_23024 2.112e-78 267.0 COG0406@1|root,COG0406@2|Bacteria,2IZ7M@203682|Planctomycetes 203682|Planctomycetes G Phosphoglycerate mutase family - - - - - - - - - - - - His_Phos_1 QTD2_k127_554888_4 1123242.JH636436_gene533 1.871e-09 59.0 COG0021@1|root,COG0021@2|Bacteria,2IXIA@203682|Planctomycetes 203682|Planctomycetes G Belongs to the transketolase family - - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C,Transketolase_N QTD2_k127_555949_2 330214.NIDE3314 1.572e-66 231.0 COG0531@1|root,COG0531@2|Bacteria 2|Bacteria E amino acid - - - - - - - - - - - - AA_permease_2 QTD2_k127_555949_0 330214.NIDE3313 0.0 3017.0 COG2132@1|root,COG2132@2|Bacteria 2|Bacteria Q Multicopper oxidase - - 1.16.3.3,1.7.2.1 ko:K00368,ko:K07233,ko:K22349 ko00910,ko01120,map00910,map01120 M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 - - - Copper-bind,Cu-oxidase_2,Cu-oxidase_3 QTD2_k127_555949_1 330214.NIDE3936 1.005e-164 523.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - - - - - - - - - - - CarboxypepD_reg,fn3_3 QTD2_k127_5574317_6 330214.NIDE1860 1.082e-71 246.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - FGE-sulfatase QTD2_k127_5574317_4 330214.NIDE1861 8.435e-105 346.0 COG5424@1|root,COG5424@2|Bacteria 2|Bacteria H Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ - - 1.3.3.11 ko:K06137 - - - - ko00000,ko01000 - - - Haem_oxygenas_2 QTD2_k127_5574317_9 330214.NIDE1862 1.015e-45 166.0 2CC8H@1|root,330SM@2|Bacteria,3J1D6@40117|Nitrospirae 40117|Nitrospirae - - - - - - - - - - - - - - - QTD2_k127_5574317_3 330214.NIDE1867 1.529e-110 364.0 2FKUS@1|root,34CF5@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_5574317_0 330214.NIDE1868 0.0 1974.0 COG0646@1|root,COG1410@1|root,COG0646@2|Bacteria,COG1410@2|Bacteria,3J0UH@40117|Nitrospirae 40117|Nitrospirae H Pterin binding enzyme - - 2.1.1.13,2.1.1.258 ko:K00548,ko:K15023 ko00270,ko00450,ko00670,ko00720,ko01100,ko01110,ko01120,ko01200,ko01230,map00270,map00450,map00670,map00720,map01100,map01110,map01120,map01200,map01230 M00017,M00377 R00946,R02289,R09365,R10243 RC00004,RC00035,RC00113,RC01144,RC01241,RC02871,RC02977 ko00000,ko00001,ko00002,ko01000 - - - B12-binding,B12-binding_2,Pterin_bind,S-methyl_trans QTD2_k127_5574317_1 330214.NIDE1870 1.065e-186 589.0 COG3437@1|root,COG3437@2|Bacteria,3J0ID@40117|Nitrospirae 2|Bacteria T response regulator - - - ko:K07814 - - - - ko00000,ko02022 - - - HD,HD_5,Protoglobin,Response_reg QTD2_k127_5574317_2 330214.NIDE1871 3.547e-126 408.0 COG0689@1|root,COG0689@2|Bacteria,3J0B8@40117|Nitrospirae 40117|Nitrospirae J Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates rph GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 ko:K00989 - - - - ko00000,ko01000,ko03016 - - - RNase_PH,RNase_PH_C QTD2_k127_5574317_5 330214.NIDE1872 2.737e-79 270.0 COG0127@1|root,COG0127@2|Bacteria,3J0ST@40117|Nitrospirae 40117|Nitrospirae F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions rdgB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 ko:K02428 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000 - - - Ham1p_like QTD2_k127_5636088_0 330214.NIDE3236 1.689e-302 926.0 COG1140@1|root,COG1140@2|Bacteria,3J1FU@40117|Nitrospirae 2|Bacteria C Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology ddhB GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.5.1 ko:K00371,ko:K16965,ko:K17048,ko:K17051 ko00642,ko00910,ko00920,ko01100,ko01120,ko01220,ko02020,map00642,map00910,map00920,map01100,map01120,map01220,map02020 M00529,M00530,M00804 R00798,R01106,R05745,R09497,R09500 RC00275,RC02555,RC02812 ko00000,ko00001,ko00002,ko01000,ko02000 5.A.3.1,5.A.3.8,5.A.3.9 - - Fer4_11 QTD2_k127_5636088_7 1499967.BAYZ01000136_gene57 2.003e-13 73.0 2EUYT@1|root,33NE0@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_5636088_5 330214.NIDE0331 3.892e-38 146.0 COG2835@1|root,COG2835@2|Bacteria 2|Bacteria EG tetraacyldisaccharide 4'-kinase activity - - - ko:K09791 - - - - ko00000 - - - Methyltransf_25,Trm112p QTD2_k127_5636088_1 330214.NIDE0330 3.087e-75 259.0 COG2928@1|root,COG2928@2|Bacteria,3J0R2@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF502) - - - - - - - - - - - - DUF502 QTD2_k127_5636088_4 330214.NIDE0329 2.668e-54 195.0 COG0454@1|root,COG0456@2|Bacteria 2|Bacteria K acetyltransferase - - - - - - - - - - - - Acetyltransf_1 QTD2_k127_5660971_0 330214.NIDE3941 7.115e-121 395.0 COG2202@1|root,COG3290@1|root,COG4191@1|root,COG5002@1|root,COG2202@2|Bacteria,COG3290@2|Bacteria,COG4191@2|Bacteria,COG5002@2|Bacteria,3J124@40117|Nitrospirae 40117|Nitrospirae T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA QTD2_k127_5660971_1 330214.NIDE3940 4.579e-50 181.0 COG0745@1|root,COG0745@2|Bacteria 330214.NIDE3940|- T phosphorelay signal transduction system - - - - - - - - - - - - - QTD2_k127_5660971_2 330214.NIDE3939 1.259e-39 153.0 COG3829@1|root,COG3829@2|Bacteria 2|Bacteria T transcription factor binding - - - - - - - - - - - - HTH_8,PAS,PilZ,Sigma54_activat QTD2_k127_5679815_1 330214.NIDE3591 3.619e-130 422.0 COG0744@1|root,COG0744@2|Bacteria,3J1FP@40117|Nitrospirae 40117|Nitrospirae M Transglycosylase - - 2.4.1.129,3.4.16.4 ko:K05365,ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - R04519 RC00005,RC00049 ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly,Transpeptidase QTD2_k127_5679815_3 330214.NIDE3590 2.704e-55 196.0 COG1664@1|root,COG1664@2|Bacteria 2|Bacteria M Polymer-forming cytoskeletal - - - - - - - - - - - - Bactofilin,zf-HC2 QTD2_k127_5679815_2 330214.NIDE3588 2.191e-73 253.0 COG4191@1|root,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - DUF4041,GGDEF,HATPase_c,HisKA,Response_reg,T5orf172,dCache_1 QTD2_k127_5679815_0 330214.NIDE3587 2.493e-246 775.0 COG3850@1|root,COG4191@1|root,COG3850@2|Bacteria,COG4191@2|Bacteria 2|Bacteria T Histidine kinase - - 2.7.13.3 ko:K07638 ko02020,ko02026,map02020,map02026 M00445,M00742,M00743 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - GAF_2,HAMP,HATPase_c,HisKA,PAS_9,PilJ,Response_reg,SpoIIE QTD2_k127_5685461_0 330214.NIDE4238 2.663e-176 555.0 COG0495@1|root,COG0495@2|Bacteria,3J0F8@40117|Nitrospirae 40117|Nitrospirae J Leucyl-tRNA synthetase, Domain 2 leuS - 6.1.1.4 ko:K01869 ko00970,map00970 M00359,M00360 R03657 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Anticodon_1,tRNA-synt_1 QTD2_k127_5685461_2 330214.NIDE4236 1.441e-118 395.0 COG1466@1|root,COG1466@2|Bacteria,3J1EC@40117|Nitrospirae 40117|Nitrospirae L DNA polymerase III, delta subunit - - 2.7.7.7 ko:K02340 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta QTD2_k127_5685461_7 330214.NIDE4235 2.019e-30 122.0 COG0268@1|root,COG0268@2|Bacteria,3J0TS@40117|Nitrospirae 40117|Nitrospirae J Binds directly to 16S ribosomal RNA rpsT - - ko:K02968 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S20p QTD2_k127_5685461_3 330214.NIDE4234 2.123e-112 366.0 COG0284@1|root,COG0284@2|Bacteria,3J0SC@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) pyrF - 4.1.1.23 ko:K01591 ko00240,ko01100,map00240,map01100 M00051 R00965 RC00409 ko00000,ko00001,ko00002,ko01000 - - - OMPdecase QTD2_k127_5685461_6 330214.NIDE3438 4.232e-41 159.0 COG4968@1|root,COG4968@2|Bacteria 2|Bacteria NU Prokaryotic N-terminal methylation motif pilA GO:0005575,GO:0005623,GO:0009289,GO:0042995,GO:0044464 - ko:K02650 ko02020,map02020 - - - ko00000,ko00001,ko02035,ko02044 3.A.15.2 - - N_methyl,Pilin_PilA QTD2_k127_5685461_4 1162668.LFE_1670 1.483e-71 263.0 COG1450@1|root,COG1450@2|Bacteria 2|Bacteria NU protein transport across the cell outer membrane gspD - - ko:K02453,ko:K03219 ko03070,ko05111,map03070,map05111 M00331,M00332,M00542 - - ko00000,ko00001,ko00002,ko02044 3.A.15,3.A.6.1,3.A.6.3 - - Secretin,Secretin_N QTD2_k127_5685461_1 330214.NIDE4203 2.918e-161 550.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE4203|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_5694930_2 330214.NIDE3605 1.853e-99 329.0 COG0545@1|root,COG0545@2|Bacteria 2|Bacteria O Peptidyl-prolyl cis-trans isomerase fkpA - 5.2.1.8 ko:K01802,ko:K03772,ko:K03773 - - - - ko00000,ko01000,ko03110 - - - FKBP_C,FKBP_N,Pro_isomerase QTD2_k127_5694930_1 330214.NIDE1482 2.107e-171 546.0 COG0741@1|root,COG0741@2|Bacteria 2|Bacteria M lytic transglycosylase activity mltC GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009279,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0019867,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031224,GO:0031225,GO:0031975,GO:0033554,GO:0034599,GO:0042221,GO:0042597,GO:0043170,GO:0044425,GO:0044462,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0061783,GO:0070887,GO:0071236,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - ko:K08306,ko:K08308,ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 iAF1260.b1193,iB21_1397.B21_01178,iBWG_1329.BWG_1018,iECBD_1354.ECBD_2429,iECB_1328.ECB_01168,iECDH10B_1368.ECDH10B_1246,iECDH1ME8569_1439.ECDH1ME8569_1132,iECD_1391.ECD_01168,iEcDH1_1363.EcDH1_2455,iEcolC_1368.EcolC_2432,iG2583_1286.G2583_3622,iJO1366.b1193,iUMNK88_1353.UMNK88_1507,iUMNK88_1353.UMNK88_3661,iY75_1357.Y75_RS06225 DUF3393,SLT QTD2_k127_5694930_0 1266925.JHVX01000004_gene1263 5.386e-192 606.0 COG0654@1|root,COG0654@2|Bacteria,1P1NX@1224|Proteobacteria,2VISH@28216|Betaproteobacteria 28216|Betaproteobacteria CH FAD binding domain - - - - - - - - - - - - FAD_binding_3 QTD2_k127_5694930_4 661367.LLO_0446 1.369e-11 66.0 2AP90@1|root,31EAZ@2|Bacteria,1QBKM@1224|Proteobacteria,1T767@1236|Gammaproteobacteria,1JEY9@118969|Legionellales 118969|Legionellales - - - - - - - - - - - - - - - QTD2_k127_5698436_3 330214.NIDE3482 1.662e-151 480.0 COG4447@1|root,COG4447@2|Bacteria 2|Bacteria S cellulose binding - - - - - - - - - - - - BNR QTD2_k127_5698436_10 1267535.KB906767_gene3397 1.872e-43 164.0 COG1977@1|root,COG1977@2|Bacteria,3Y5J3@57723|Acidobacteria,2JJVU@204432|Acidobacteriia 204432|Acidobacteriia H Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - - - - - - - - - - - QTD2_k127_5698436_9 1419583.V466_03460 1.747e-44 165.0 COG3795@1|root,COG3795@2|Bacteria,1RCZT@1224|Proteobacteria,1S69N@1236|Gammaproteobacteria,1YTPA@136843|Pseudomonas fluorescens group 1236|Gammaproteobacteria S YCII-related domain - - - - - - - - - - - - YCII QTD2_k127_5698436_8 1502851.FG93_04366 9.472e-66 227.0 COG3795@1|root,COG3795@2|Bacteria,1RCZT@1224|Proteobacteria,2U735@28211|Alphaproteobacteria,3JZ56@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria S YCII-related domain - - - - - - - - - - - - YCII QTD2_k127_5698436_7 1157708.KB907457_gene2563 1.228e-71 247.0 COG3832@1|root,COG3832@2|Bacteria,1RDMX@1224|Proteobacteria,2VRWE@28216|Betaproteobacteria,4AEHP@80864|Comamonadaceae 28216|Betaproteobacteria S Polyketide cyclase / dehydrase and lipid transport - - - - - - - - - - - - Polyketide_cyc2 QTD2_k127_5698436_2 330214.NIDE3475 5.866e-175 557.0 COG0845@1|root,COG0845@2|Bacteria,3J10X@40117|Nitrospirae 40117|Nitrospirae M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - HlyD_D23 QTD2_k127_5698436_0 330214.NIDE3474 0.0 1667.0 COG0841@1|root,COG0841@2|Bacteria,3J0FA@40117|Nitrospirae 40117|Nitrospirae V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K03296,ko:K18138,ko:K19585 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718,M00767 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2,2.A.6.2.47 - - ACR_tran QTD2_k127_5698436_1 330214.NIDE3473 4.945e-219 688.0 COG1538@1|root,COG1538@2|Bacteria,3J0N2@40117|Nitrospirae 40117|Nitrospirae M Evidence 2b Function of strongly homologous gene - - - ko:K18139 ko01501,ko02024,map01501,map02024 M00642,M00643,M00647,M00718,M00768,M00822 - - ko00000,ko00001,ko00002,ko01504,ko02000 1.B.17,2.A.6.2 - - OEP QTD2_k127_5698436_14 1297742.A176_04135 3.188e-06 52.0 2EFSR@1|root,339IR@2|Bacteria 2|Bacteria S Protein of unknown function (DUF2934) - - - - - - - - - - - - DUF2934 QTD2_k127_5698436_6 330214.NIDE0047 4.127e-84 282.0 COG0778@1|root,COG0778@2|Bacteria 2|Bacteria C coenzyme F420-1:gamma-L-glutamate ligase activity tdsD - - - - - - - - - - - Nitroreductase QTD2_k127_5698436_5 330214.NIDE0051 9.568e-96 317.0 COG0122@1|root,COG0122@2|Bacteria 2|Bacteria L 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase alkA - 2.1.1.63,3.2.2.21 ko:K00567,ko:K01247 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD QTD2_k127_5698436_4 330214.NIDE0052 6.534e-124 407.0 COG0491@1|root,COG1141@1|root,COG0491@2|Bacteria,COG1141@2|Bacteria 2|Bacteria C electron transfer activity rnfB - - ko:K03616 - - - - ko00000 - - - FeS,Fer4,Fer4_13,Lactamase_B,Lactamase_B_5 QTD2_k127_5698436_12 1500894.JQNN01000001_gene71 5.416e-33 145.0 COG0726@1|root,COG4249@1|root,COG0726@2|Bacteria,COG4249@2|Bacteria,1PJQG@1224|Proteobacteria,2VIG8@28216|Betaproteobacteria,4757C@75682|Oxalobacteraceae 28216|Betaproteobacteria G Polysaccharide deacetylase nodB - 3.5.1.104,3.5.1.41 ko:K01452,ko:K14659,ko:K22278 ko00520,ko01100,map00520,map01100 M00664 R02333 RC00166,RC00300 ko00000,ko00001,ko00002,ko01000 - - - Peptidase_C14,Polysacc_deac_1,TPR_16,TPR_8 QTD2_k127_5698436_11 330214.NIDE4035 5.141e-34 148.0 COG1262@1|root,COG1262@2|Bacteria 2|Bacteria T PFAM Formylglycine-generating sulfatase enzyme - - - - - - - - - - - - FGE-sulfatase QTD2_k127_5708504_0 330214.NIDE4329 3.486e-253 790.0 COG0728@1|root,COG0728@2|Bacteria,3J0CQ@40117|Nitrospirae 40117|Nitrospirae S Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane murJ - - ko:K03980 - - - - ko00000,ko01011,ko02000 2.A.66.4 - - MVIN QTD2_k127_5708504_1 330214.NIDE4328 1.276e-46 176.0 COG0350@1|root,COG0350@2|Bacteria,3J1A8@40117|Nitrospirae 40117|Nitrospirae L Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated - - 2.1.1.63 ko:K00567 - - - - ko00000,ko01000,ko03400 - - - DNA_binding_1 QTD2_k127_5733387_2 330214.NIDE0326 3.502e-125 406.0 COG1611@1|root,COG1611@2|Bacteria,3J169@40117|Nitrospirae 40117|Nitrospirae S Possible lysine decarboxylase - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox QTD2_k127_5733387_0 330214.NIDE0325 2.82e-234 732.0 COG1236@1|root,COG1236@2|Bacteria,3J0FD@40117|Nitrospirae 40117|Nitrospirae J Beta-Casp domain - - - ko:K07576 - - - - ko00000 - - - Beta-Casp,Lactamase_B,RMMBL QTD2_k127_5733387_3 483219.LILAB_28660 1.35e-108 366.0 COG3191@1|root,COG3191@2|Bacteria,1MWDP@1224|Proteobacteria,42YEF@68525|delta/epsilon subdivisions,2WU92@28221|Deltaproteobacteria,2YYRX@29|Myxococcales 28221|Deltaproteobacteria E Peptidase family S58 dmpA - 3.4.11.19 ko:K01266 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S58 QTD2_k127_5733387_1 330214.NIDE0322 6.011e-145 469.0 COG4398@1|root,COG4398@2|Bacteria 2|Bacteria E FIST C domain - GO:0008150,GO:0040007 - - - - - - - - - - FIST,FIST_C QTD2_k127_5733387_4 330214.NIDE0321 1.552e-50 183.0 COG0545@1|root,COG0545@2|Bacteria 2|Bacteria O Peptidyl-prolyl cis-trans isomerase fkpA - 5.2.1.8 ko:K01802,ko:K03772 - - - - ko00000,ko01000,ko03110 - - - FKBP_C QTD2_k127_5733387_5 330214.NIDE0320 1.115e-31 125.0 COG0404@1|root,COG0404@2|Bacteria,3J11R@40117|Nitrospirae 40117|Nitrospirae H Aminomethyltransferase folate-binding domain - - 2.1.2.10 ko:K00605 ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200 M00532 R01221,R02300,R04125 RC00022,RC00069,RC00183,RC02834 ko00000,ko00001,ko00002,ko01000 - - - GCV_T,GCV_T_C QTD2_k127_5738587_4 1123376.AUIU01000003_gene1639 2.929e-13 73.0 COG4974@1|root,COG4974@2|Bacteria,3J1FQ@40117|Nitrospirae 40117|Nitrospirae L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_integrase QTD2_k127_5738587_2 330214.NIDE3585 3.582e-57 202.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HATPase_c,HisKA,PAS,PIG-L,Response_reg QTD2_k127_5738587_3 1538644.KO02_12920 7.296e-33 130.0 COG3118@1|root,COG3118@2|Bacteria,4NQ5B@976|Bacteroidetes,1ISZS@117747|Sphingobacteriia 976|Bacteroidetes O Belongs to the thioredoxin family trxA - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin QTD2_k127_5738587_1 768670.Calni_0521 6.499e-131 432.0 COG1055@1|root,COG1055@2|Bacteria 2|Bacteria P arsenite transmembrane transporter activity arsB - - - - - - - - - - - CitMHS QTD2_k127_5738587_0 575540.Isop_3152 4.34e-207 655.0 COG0296@1|root,COG0296@2|Bacteria,2IXS1@203682|Planctomycetes 203682|Planctomycetes G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position glgB - 2.4.1.18 ko:K00700 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R02110 - ko00000,ko00001,ko00002,ko01000,ko04147 - CBM48,GH13 - Alpha-amylase,Alpha-amylase_C,CBM_48 QTD2_k127_5752580_3 330214.NIDE0055 3.431e-46 169.0 COG0583@1|root,COG0583@2|Bacteria 2|Bacteria K DNA-binding transcription factor activity oxyR - - ko:K04761 ko02026,map02026 - - - ko00000,ko00001,ko03000 - - - HTH_1,LysR_substrate QTD2_k127_5752580_2 330214.NIDE4061 2.99e-88 305.0 COG0346@1|root,COG0346@2|Bacteria 2|Bacteria E lactoylglutathione lyase activity - - - ko:K08234 - - - - ko00000 - - - Glyoxalase QTD2_k127_5752580_0 330214.NIDE4062 5.584e-231 732.0 COG1012@1|root,COG1012@2|Bacteria 2|Bacteria C belongs to the aldehyde dehydrogenase family pcd GO:0003674,GO:0003824,GO:0004029,GO:0006081,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0044237,GO:0055114,GO:0071704 1.2.1.3 ko:K00128 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh QTD2_k127_5752580_1 330214.NIDE4063 1.175e-182 576.0 COG1748@1|root,COG1748@2|Bacteria 2|Bacteria E saccharopine dehydrogenase activity lysDH - 1.5.1.7 ko:K00290 ko00300,ko00310,ko01100,ko01110,ko01130,ko01230,map00300,map00310,map01100,map01110,map01130,map01230 M00030,M00032 R00715 RC00217,RC01532 ko00000,ko00001,ko00002,ko01000 - - - ELFV_dehydrog,Sacchrp_dh_C,Sacchrp_dh_NADP QTD2_k127_5752580_4 330214.NIDE4065 1.799e-23 103.0 COG2856@1|root,COG2856@2|Bacteria 2|Bacteria E Zn peptidase - - - - - - - - - - - - Peptidase_M78 QTD2_k127_5779093_0 330214.NIDE2671 1.6e-110 366.0 COG4206@1|root,COG4206@2|Bacteria 2|Bacteria H cobalamin-transporting ATPase activity btuB - - ko:K02014,ko:K16092 - - - - ko00000,ko02000 1.B.14,1.B.14.3 - - Plug,TonB_dep_Rec QTD2_k127_5779093_1 330214.NIDE2672 2.898e-93 314.0 COG1120@1|root,COG1120@2|Bacteria,3J14U@40117|Nitrospirae 40117|Nitrospirae HP ABC transporter - - 3.6.3.34 ko:K02013 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.14 - - ABC_tran QTD2_k127_5779093_2 330214.NIDE2673 1.177e-86 291.0 COG0609@1|root,COG0609@2|Bacteria,3J11Y@40117|Nitrospirae 40117|Nitrospirae P Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily - - - ko:K02015 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko02000 3.A.1.14 - - FecCD QTD2_k127_5787796_0 330214.NIDE4089 6.569e-113 368.0 COG1702@1|root,COG1702@2|Bacteria,3J0AD@40117|Nitrospirae 40117|Nitrospirae T PhoH-like protein - - - ko:K06217 - - - - ko00000 - - - PhoH QTD2_k127_5787796_2 330214.NIDE4088 2.567e-36 145.0 COG0319@1|root,COG0319@2|Bacteria,3J0US@40117|Nitrospirae 40117|Nitrospirae J Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA ybeY - - ko:K07042 - - - - ko00000,ko03009 - - - UPF0054 QTD2_k127_5787796_1 330214.NIDE4087 3.96e-99 329.0 COG0552@1|root,COG0552@2|Bacteria,3J0GY@40117|Nitrospirae 40117|Nitrospirae D Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) ftsY - - ko:K03110 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2,3.A.5.7 - - SRP54,SRP54_N QTD2_k127_579687_2 1134912.AJTV01000002_gene1748 1.78e-44 171.0 2AC8B@1|root,311T0@2|Bacteria,1NK0P@1224|Proteobacteria,2VD5M@28211|Alphaproteobacteria,3713U@31993|Methylocystaceae 28211|Alphaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_579687_1 204669.Acid345_2272 2.604e-76 267.0 COG2010@1|root,COG2010@2|Bacteria,3Y5ZT@57723|Acidobacteria 57723|Acidobacteria C Cytochrome c - - - - - - - - - - - - Cytochrom_C QTD2_k127_579687_0 1198114.AciX9_2007 1.96e-184 583.0 COG2826@1|root,COG2826@2|Bacteria,3Y896@57723|Acidobacteria,2JN59@204432|Acidobacteriia 204432|Acidobacteriia L Helix-turn-helix domain - - - - - - - - - - - - HTH_38,rve QTD2_k127_5812156_5 1122603.ATVI01000006_gene805 3.332e-148 488.0 COG1858@1|root,COG1858@2|Bacteria 2|Bacteria C electron transfer activity shp - 1.11.1.5 ko:K00428 - - - - ko00000,ko01000 - - - CCP_MauG,Cytochrom_C,DUF1924 QTD2_k127_5812156_12 330214.NIDE1024 1.318e-46 176.0 COG2206@1|root,COG2206@2|Bacteria 2|Bacteria T PFAM metal-dependent phosphohydrolase, HD sub domain - - - - - - - - - - - - GAF,GGDEF,HD,HD_5 QTD2_k127_5812156_7 330214.NIDE1026 1.513e-84 286.0 COG3901@1|root,COG3901@2|Bacteria 2|Bacteria CK FMN binding nosR - - ko:K19339,ko:K19343 - - - - ko00000,ko03000 - - - FMN_bind,Fer4_5 QTD2_k127_5812156_2 330214.NIDE0994 8.895e-166 535.0 COG1730@1|root,COG1730@2|Bacteria 2|Bacteria O sister chromatid segregation - - - - - - - - - - - - - QTD2_k127_5812156_15 502025.Hoch_2029 3.691e-06 51.0 2BR48@1|root,32K27@2|Bacteria,1Q2KM@1224|Proteobacteria,43878@68525|delta/epsilon subdivisions,2X3H6@28221|Deltaproteobacteria,2YW2M@29|Myxococcales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_5812156_6 330214.NIDE1029 4.748e-125 409.0 COG1477@1|root,COG1477@2|Bacteria 2|Bacteria H protein flavinylation nosX - 2.7.1.180 ko:K03734 - - - - ko00000,ko01000 - - - ApbE QTD2_k127_5812156_16 1183438.GKIL_1574 0.0001086 53.0 COG0810@1|root,COG0810@2|Bacteria,1G6FF@1117|Cyanobacteria 1117|Cyanobacteria M TIGRFAM TonB family C-terminal domain - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C QTD2_k127_5812156_14 589865.DaAHT2_0842 1.561e-17 87.0 COG0848@1|root,COG0848@2|Bacteria,1PQM1@1224|Proteobacteria,43A65@68525|delta/epsilon subdivisions,2X36W@28221|Deltaproteobacteria,2MPED@213118|Desulfobacterales 28221|Deltaproteobacteria U Biopolymer transport protein ExbD/TolR - - - ko:K03559 - - - - ko00000,ko02000 1.A.30.2.1 - - ExbD QTD2_k127_5812156_11 330214.NIDE1033 1.423e-69 237.0 COG0811@1|root,COG0811@2|Bacteria 2|Bacteria U bacteriocin transport exbB GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - ko:K03561,ko:K03562 ko01120,map01120 - - - ko00000,ko02000 1.A.30.2.1,1.A.30.2.2 - - MotA_ExbB QTD2_k127_5812156_4 330214.NIDE1034 3.388e-161 515.0 COG3842@1|root,COG3842@2|Bacteria 2|Bacteria P ATPase activity potA - 3.6.3.30 ko:K02010 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.10 - - ABC_tran,TOBE_2 QTD2_k127_5812156_0 330214.NIDE1035 4.101e-234 734.0 COG1178@1|root,COG1178@2|Bacteria 2|Bacteria P thiamine transport sfuB - - ko:K02011 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - BPD_transp_1 QTD2_k127_5812156_3 330214.NIDE1036 3.262e-165 525.0 COG1840@1|root,COG1840@2|Bacteria 2|Bacteria P iron ion homeostasis fbpA GO:0005575,GO:0005623,GO:0042597,GO:0044464 - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - iJN678.sufA SBP_bac_6,SBP_bac_8 QTD2_k127_5812156_10 330214.NIDE1037 1.24e-80 271.0 COG0735@1|root,COG0735@2|Bacteria,3J0UN@40117|Nitrospirae 40117|Nitrospirae P Belongs to the Fur family - - - ko:K03711 - - - - ko00000,ko03000 - - - FUR QTD2_k127_5812156_1 330214.NIDE1041 1.671e-221 691.0 COG2317@1|root,COG2317@2|Bacteria 2|Bacteria E metallocarboxypeptidase activity ypwA GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.17.19 ko:K01299,ko:K03281 - - - - ko00000,ko01000,ko01002 2.A.49 - - Peptidase_M32 QTD2_k127_5866121_0 1163617.SCD_n01346 6.531e-86 292.0 COG0463@1|root,COG0463@2|Bacteria,1PVP4@1224|Proteobacteria,2VMSR@28216|Betaproteobacteria 28216|Betaproteobacteria M Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 QTD2_k127_5866121_1 324925.Ppha_0562 8.668e-66 229.0 COG0110@1|root,COG0110@2|Bacteria 2|Bacteria S O-acyltransferase activity wcaF - 2.3.1.79 ko:K00661,ko:K03818 - - - - ko00000,ko01000 - - - Hexapep,Hexapep_2 QTD2_k127_5866121_2 857087.Metme_0412 3.701e-56 203.0 COG0110@1|root,COG0110@2|Bacteria,1RDCP@1224|Proteobacteria,1S446@1236|Gammaproteobacteria 1236|Gammaproteobacteria S UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase - - - - - - - - - - - - Hexapep,Hexapep_2 QTD2_k127_5875055_2 330214.NIDE3772 6.249e-70 241.0 COG1278@1|root,COG1544@1|root,COG1278@2|Bacteria,COG1544@2|Bacteria 2|Bacteria J regulation of translation raiA - - ko:K03704,ko:K05809 - - - - ko00000,ko03000,ko03009 - - - CSD,Ribosomal_S30AE QTD2_k127_5875055_0 330214.NIDE3773 0.0 1239.0 COG1067@1|root,COG1067@2|Bacteria,3J0X2@40117|Nitrospirae 40117|Nitrospirae O AAA domain - - - - - - - - - - - - AAA_32,Lon_C QTD2_k127_5875055_4 330214.NIDE3775 3.937e-47 172.0 COG2010@1|root,COG2010@2|Bacteria,3J1AX@40117|Nitrospirae 2|Bacteria C Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K12263 - - - - ko00000 - - - Cytochrome_CBB3,SirB QTD2_k127_5875055_3 279714.FuraDRAFT_3506 4.234e-67 233.0 COG1335@1|root,COG1335@2|Bacteria,1MUGW@1224|Proteobacteria,2VIMK@28216|Betaproteobacteria,2KRTA@206351|Neisseriales 206351|Neisseriales Q Isochorismatase family - - 3.5.1.19 ko:K08281 ko00760,ko01100,map00760,map01100 - R01268 RC00100 ko00000,ko00001,ko01000 - - - Isochorismatase QTD2_k127_5875055_1 330214.NIDE3777 5.116e-167 532.0 COG1488@1|root,COG1488@2|Bacteria 2|Bacteria H Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP pncB GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.21 ko:K00763 ko00760,ko01100,map00760,map01100 - R01724 RC00033 ko00000,ko00001,ko01000 - - iYO844.BSU31750 NAPRTase QTD2_k127_5909864_1 1340493.JNIF01000004_gene314 4.773e-191 610.0 COG2433@1|root,COG2433@2|Bacteria,3Y5W3@57723|Acidobacteria 57723|Acidobacteria S Transposase IS66 family - - - - - - - - - - - - DDE_Tnp_IS66,LZ_Tnp_IS66,zf-IS66 QTD2_k127_5909864_2 234267.Acid_2529 8.693e-40 152.0 COG3436@1|root,COG3436@2|Bacteria 2|Bacteria L PFAM IS66 Orf2 family protein tnpB - - ko:K07484 - - - - ko00000 - - - TnpB_IS66 QTD2_k127_5909864_0 1191523.MROS_2800 3.885e-206 649.0 COG0334@1|root,COG0334@2|Bacteria 2|Bacteria E glutamate dehydrogenase [NAD(P)+] activity gluD GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 ko:K00260,ko:K00261,ko:K00262 ko00220,ko00250,ko00430,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00430,map00471,map00910,map01100,map01200,map04217,map04964 M00740 R00243,R00248 RC00006,RC02799 ko00000,ko00001,ko00002,ko01000,ko04147 - - iJN678.gdhA ELFV_dehydrog,ELFV_dehydrog_N QTD2_k127_5920670_2 330214.NIDE0359 1.222e-26 113.0 COG0594@1|root,COG0594@2|Bacteria 2|Bacteria J ribonuclease P activity rnpA GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031123,GO:0031404,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904 3.1.26.5 ko:K03536,ko:K08998 - - - - ko00000,ko01000,ko03016 - - - Ribonuclease_P QTD2_k127_5920670_3 203124.Tery_4697 4.433e-24 103.0 COG0759@1|root,COG0759@2|Bacteria,1G90B@1117|Cyanobacteria,1HCVK@1150|Oscillatoriales 1117|Cyanobacteria S Could be involved in insertion of integral membrane proteins into the membrane - - - ko:K08998 - - - - ko00000 - - - Haemolytic QTD2_k127_5920670_0 330214.NIDE0360 3.187e-237 745.0 COG0706@1|root,COG0706@2|Bacteria,3J0GD@40117|Nitrospirae 40117|Nitrospirae U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins yidC - - ko:K03217 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP,YidC_periplas QTD2_k127_5920670_1 330214.NIDE0361 2.305e-146 477.0 COG0486@1|root,COG0486@2|Bacteria,3J0JZ@40117|Nitrospirae 40117|Nitrospirae S Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 trmE - - ko:K03650 - - R08701 RC00053,RC00209,RC00870 ko00000,ko01000,ko03016 - - - MMR_HSR1,MnmE_helical,TrmE_N QTD2_k127_5922_18 330214.NIDE3311 1.207e-154 492.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - - - - - - - - - - - CarboxypepD_reg,fn3_3 QTD2_k127_5922_26 330214.NIDE3309 1.028e-127 422.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT,HEAT_2,HEAT_PBS QTD2_k127_5922_25 330214.NIDE3308 5.435e-140 450.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - - - - - - - - - - - CarboxypepD_reg,fn3_3 QTD2_k127_5922_19 330214.NIDE3307 7.58e-153 488.0 COG2813@1|root,COG2813@2|Bacteria 2|Bacteria J rRNA (guanine-N2-)-methyltransferase activity crtF GO:0003674,GO:0003824,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0030493,GO:0030494,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0036067,GO:0036069,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.210,2.1.1.304,2.1.1.333 ko:K09846,ko:K13604,ko:K21460 ko00860,ko00906,ko01100,ko01110,map00860,map00906,map01100,map01110 - R07521,R07524,R07527,R07529,R07533,R07535,R09063 RC00003,RC01662,RC02082 ko00000,ko00001,ko01000 - - - Dimerisation2,Methyltransf_2,Methyltransf_25 QTD2_k127_5922_28 330214.NIDE3306 2.712e-102 337.0 COG2322@1|root,COG2322@2|Bacteria 2|Bacteria S membrane - - - ko:K08976 - - - - ko00000 - - - DUF420 QTD2_k127_5922_4 330214.NIDE3303 7.488e-298 925.0 COG1271@1|root,COG1271@2|Bacteria 2|Bacteria C aerobic electron transport chain - - 1.10.3.14 ko:K00425,ko:K08738 ko00190,ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00190,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00153,M00595 R10151,R11325 RC00061,RC03151,RC03152 ko00000,ko00001,ko00002,ko01000 3.D.4.3,3.D.4.6 - - Cyt_bd_oxida_I,Cytochrome_CBB3 QTD2_k127_5922_23 330214.NIDE3300 7.18e-141 452.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - FGE-sulfatase QTD2_k127_5922_27 330214.NIDE3299 1.633e-127 414.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 40117|Nitrospirae S Evidence 4 Homologs of previously reported genes of - - 1.14.99.50 ko:K18912 ko00340,map00340 - R11013 RC03323,RC03324 ko00000,ko00001,ko01000 - - - FGE-sulfatase QTD2_k127_5922_1 330214.NIDE3296 0.0 1175.0 COG1271@1|root,COG1271@2|Bacteria 2|Bacteria C aerobic electron transport chain - - 1.10.3.14 ko:K00425,ko:K08738 ko00190,ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00190,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00153,M00595 R10151,R11325 RC00061,RC03151,RC03152 ko00000,ko00001,ko00002,ko01000 3.D.4.3,3.D.4.6 - - Cyt_bd_oxida_I,Cytochrome_CBB3 QTD2_k127_5922_9 330214.NIDE3295 5.348e-216 678.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c ccoP - - ko:K00405 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrom_C,Cytochrome_CBB3,FixO QTD2_k127_5922_13 330214.NIDE3294 1.341e-200 627.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - - - - - - - - - - Cytochrome_CBB3 QTD2_k127_5922_3 330214.NIDE3293 2.929e-316 975.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - ko:K00405 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrome_CBB3,DHOR,DUF3365,FixO,PSCyt1 QTD2_k127_5922_35 330214.NIDE3292 1.531e-47 178.0 COG0746@1|root,COG0746@2|Bacteria,3J1C5@40117|Nitrospirae 40117|Nitrospirae H Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor mobA - 2.7.7.77 ko:K03752 ko00790,ko01100,map00790,map01100 - R11581 - ko00000,ko00001,ko01000 - - - NTP_transf_3 QTD2_k127_5922_6 330214.NIDE3290 3.726e-274 853.0 COG0018@1|root,COG0018@2|Bacteria,3J0A8@40117|Nitrospirae 40117|Nitrospirae J Arginyl tRNA synthetase N terminal dom argS - 6.1.1.19 ko:K01887 ko00970,map00970 M00359,M00360 R03646 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d QTD2_k127_5922_16 330214.NIDE3289 2.854e-174 556.0 COG0343@1|root,COG0343@2|Bacteria,3J0DU@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) tgt GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 ko:K00773 - - R03789,R10209 RC00063 ko00000,ko01000,ko03016 - - - TGT QTD2_k127_5922_36 330214.NIDE3288 4.313e-45 166.0 COG1862@1|root,COG1862@2|Bacteria,3J0UB@40117|Nitrospirae 40117|Nitrospirae U Preprotein translocase subunit yajC - - ko:K03210 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - YajC QTD2_k127_5922_5 330214.NIDE3287 1.298e-279 867.0 COG0342@1|root,COG0342@2|Bacteria,3J09Z@40117|Nitrospirae 40117|Nitrospirae U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - ko:K03072 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG QTD2_k127_5922_21 330214.NIDE3286 6.349e-148 473.0 COG0341@1|root,COG0341@2|Bacteria,3J0GM@40117|Nitrospirae 40117|Nitrospirae U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secF GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - ko:K03074 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG QTD2_k127_5922_0 330214.NIDE3284 0.0 1580.0 COG3829@1|root,COG4191@1|root,COG5000@1|root,COG3829@2|Bacteria,COG4191@2|Bacteria,COG5000@2|Bacteria,3J117@40117|Nitrospirae 40117|Nitrospirae T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - DUF3365,HAMP,HATPase_c,HisKA,PAS_4 QTD2_k127_5922_12 330214.NIDE3283 1.014e-205 653.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_5922_14 330214.NIDE3282 2.586e-195 616.0 COG2319@1|root,COG2319@2|Bacteria 2|Bacteria S anaphase-promoting complex binding - - - - - - - - - - - - WD40 QTD2_k127_5922_11 330214.NIDE3281 2.732e-208 648.0 2AKTZ@1|root,31BM1@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_5922_31 330214.NIDE3280 9.2e-90 299.0 COG0437@1|root,COG0437@2|Bacteria 2|Bacteria C 4 iron, 4 sulfur cluster binding napG GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - ko:K02573 - - - - ko00000 - - - Fer4,Fer4_4,Fer4_7 QTD2_k127_5922_17 330214.NIDE3279 5.799e-169 536.0 COG3381@1|root,COG3381@2|Bacteria 2|Bacteria S protein complex oligomerization - - - - - - - - - - - - Nitrate_red_del QTD2_k127_5922_15 330214.NIDE3278 2.538e-193 604.0 COG2180@1|root,COG2180@2|Bacteria 2|Bacteria C chaperone-mediated protein complex assembly narJ GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0051131,GO:0065003,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 - ko:K00373,ko:K17052 ko02020,map02020 - - - ko00000,ko00001,ko02000 5.A.3.8 - iE2348C_1286.E2348C_1350,iECABU_c1320.ECABU_c15020,iECIAI1_1343.ECIAI1_1469,iECO103_1326.ECO103_1331,iECO111_1330.ECO111_1557,iECW_1372.ECW_m1594,iEKO11_1354.EKO11_2354,iLF82_1304.LF82_1462,iNRG857_1313.NRG857_06280,iSSON_1240.SSON_1659,iWFL_1372.ECW_m1594,ic_1306.c1687 Nitrate_red_del QTD2_k127_5922_2 330214.NIDE3276 0.0 1052.0 COG1032@1|root,COG1032@2|Bacteria 2|Bacteria C radical SAM domain protein - - - - - - - - - - - - B12-binding,PqqD,Radical_SAM QTD2_k127_5922_24 330214.NIDE3274 1.276e-140 450.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE3274|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_5922_39 330214.NIDE3273 7.448e-28 117.0 COG1826@1|root,COG1826@2|Bacteria,3J1A4@40117|Nitrospirae 40117|Nitrospirae U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system - - - ko:K03116 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 QTD2_k127_5922_7 330214.NIDE3272 9.768e-249 770.0 COG3391@1|root,COG3391@2|Bacteria,3J19W@40117|Nitrospirae 40117|Nitrospirae S NHL repeat - - - - - - - - - - - - NHL QTD2_k127_5922_20 330214.NIDE3271 2.934e-149 475.0 COG2180@1|root,COG2180@2|Bacteria 2|Bacteria C chaperone-mediated protein complex assembly narJ GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0051131,GO:0065003,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 - ko:K00373,ko:K17052 ko02020,map02020 - - - ko00000,ko00001,ko02000 5.A.3.8 - iE2348C_1286.E2348C_1350,iECABU_c1320.ECABU_c15020,iECIAI1_1343.ECIAI1_1469,iECO103_1326.ECO103_1331,iECO111_1330.ECO111_1557,iECW_1372.ECW_m1594,iEKO11_1354.EKO11_2354,iLF82_1304.LF82_1462,iNRG857_1313.NRG857_06280,iSSON_1240.SSON_1659,iWFL_1372.ECW_m1594,ic_1306.c1687 Nitrate_red_del QTD2_k127_5922_8 330214.NIDE3269 7.047e-236 734.0 COG3005@1|root,COG3005@2|Bacteria 2|Bacteria C denitrification pathway - - - - - - - - - - - - Cytochrome_C554 QTD2_k127_5922_10 330214.NIDE3268 3.689e-209 656.0 COG3005@1|root,COG3005@2|Bacteria 2|Bacteria C denitrification pathway - - - - - - - - - - - - Cytochrome_C554 QTD2_k127_5950729_0 330214.NIDE3564 1.63e-322 1012.0 COG4548@1|root,COG4548@2|Bacteria 2|Bacteria P von Willebrand factor (vWF) type A domain - - - ko:K02448 - - R00294 RC02794 ko00000 3.D.4.10 - - VWA,VWA_2 QTD2_k127_5950729_6 330214.NIDE3563 5.529e-68 233.0 2DESJ@1|root,2ZP2P@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_5950729_2 330214.NIDE3562 3.575e-160 509.0 COG0039@1|root,COG0039@2|Bacteria,3J0EG@40117|Nitrospirae 40117|Nitrospirae C Catalyzes the reversible oxidation of malate to oxaloacetate mdh - 1.1.1.37 ko:K00024 ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740 R00342,R07136 RC00031 ko00000,ko00001,ko00002,ko01000 - - - Ldh_1_C,Ldh_1_N QTD2_k127_5950729_3 330214.NIDE3561 2.195e-102 335.0 COG3748@1|root,COG3748@2|Bacteria,3J19B@40117|Nitrospirae 40117|Nitrospirae S Pfam:DUF989 - - - - - - - - - - - - Urate_ox_N QTD2_k127_5950729_1 330214.NIDE3560 4.638e-249 773.0 COG1894@1|root,COG1894@2|Bacteria,3J0WA@40117|Nitrospirae 40117|Nitrospirae C NADH-ubiquinone oxidoreductase-F iron-sulfur binding region - - 1.6.5.3 ko:K00335 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_51K,NADH_4Fe-4S,SLBB QTD2_k127_5950729_8 330214.NIDE3559 1.793e-52 186.0 COG0633@1|root,COG0633@2|Bacteria 2|Bacteria C Ferredoxin fdx GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006790,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0022900,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0071840 - ko:K04755 - - - - ko00000 - - - Fer2 QTD2_k127_5950729_7 330214.NIDE3558 2.515e-60 209.0 COG0316@1|root,COG0316@2|Bacteria,3J0TZ@40117|Nitrospirae 40117|Nitrospirae S Belongs to the HesB IscA family - - - ko:K15724 - - - - ko00000 - - - Fe-S_biosyn QTD2_k127_5950729_9 1178537.BA1_14572 2.876e-33 134.0 COG0720@1|root,COG0720@2|Bacteria,1UZVB@1239|Firmicutes,4H9SV@91061|Bacilli 91061|Bacilli H 6-pyruvoyl tetrahydropterin synthase - - 4.1.2.50,4.2.3.12 ko:K01737 ko00790,ko01100,map00790,map01100 M00842,M00843 R04286,R09959 RC01117,RC02846,RC02847 ko00000,ko00001,ko00002,ko01000,ko03016 - - - PTPS QTD2_k127_5950729_5 330214.NIDE3555 1.749e-93 312.0 COG0302@1|root,COG0302@2|Bacteria,3J0Q0@40117|Nitrospirae 40117|Nitrospirae F GTP cyclohydrolase I folE GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 ko:K01495 ko00790,ko01100,map00790,map01100 M00126,M00841,M00842,M00843 R00428,R04639,R05046,R05048 RC00263,RC00294,RC00323,RC00945,RC01188 ko00000,ko00001,ko00002,ko01000 - - - GTP_cyclohydroI QTD2_k127_5950729_4 330214.NIDE3554 8.652e-95 317.0 COG0596@1|root,COG0596@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds pcaD - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4 QTD2_k127_5950729_10 330214.NIDE3553 1.723e-08 58.0 COG2256@1|root,COG2256@2|Bacteria,3J0H6@40117|Nitrospirae 40117|Nitrospirae L MgsA AAA+ ATPase C terminal - - - ko:K07478 - - - - ko00000 - - - AAA_assoc_2,MgsA_C,RuvB_N QTD2_k127_5958096_0 1232410.KI421421_gene3797 1.849e-317 992.0 COG0058@1|root,COG0058@2|Bacteria,1MW4J@1224|Proteobacteria,42MEQ@68525|delta/epsilon subdivisions,2WIPF@28221|Deltaproteobacteria,43T5A@69541|Desulfuromonadales 28221|Deltaproteobacteria G Protein of unknown function (DUF3417) glgP - 2.4.1.1 ko:K00688 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R02111 - ko00000,ko00001,ko01000 - GT35 - DUF3417,Phosphorylase QTD2_k127_5958096_8 1216007.AOPM01000030_gene3483 1.948e-12 76.0 COG1974@1|root,COG1974@2|Bacteria,1RHIM@1224|Proteobacteria,1RSKU@1236|Gammaproteobacteria,2Q1RY@267888|Pseudoalteromonadaceae 1236|Gammaproteobacteria K Peptidase S24-like - - - - - - - - - - - - HTH_3,Peptidase_S24 QTD2_k127_5958096_5 330214.NIDE3231 1.048e-36 143.0 COG0517@1|root,COG0517@2|Bacteria 2|Bacteria S IMP dehydrogenase activity - - - ko:K09137 - - - - ko00000 - - - CBS,DUF190 QTD2_k127_5958096_4 330214.NIDE3233 5.858e-40 151.0 COG3189@1|root,COG3189@2|Bacteria,3J1F0@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function, DUF488 - - - - - - - - - - - - DUF488 QTD2_k127_5958096_1 330214.NIDE3514 1.794e-101 334.0 COG0546@1|root,COG0546@2|Bacteria,3J11X@40117|Nitrospirae 40117|Nitrospirae S phosphoglycolate phosphatase activity - - - - - - - - - - - - - QTD2_k127_5958096_2 330214.NIDE3983 1.518e-88 305.0 COG4585@1|root,COG4585@2|Bacteria 2|Bacteria T Histidine kinase - - 2.7.13.3 ko:K07683 ko02020,map02020 M00483 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - ABC_sub_bind,GAF_2,HATPase_c,HisKA_3,PAS_3,PAS_4,PAS_9 QTD2_k127_5958096_3 330214.NIDE3247 1.554e-86 300.0 COG2197@1|root,COG2197@2|Bacteria 2|Bacteria K response regulator - - - ko:K02282 - - - - ko00000,ko02035,ko02044 - - - GerE,Response_reg QTD2_k127_5958096_6 870187.Thini_1834 3.563e-17 88.0 COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,1RQ1J@1236|Gammaproteobacteria,460UF@72273|Thiotrichales 72273|Thiotrichales K PFAM Response regulator receiver domain - - - - - - - - - - - - GerE,Response_reg QTD2_k127_5980364_2 330214.NIDE2053 1.084e-198 624.0 COG1190@1|root,COG1190@2|Bacteria,3J0AW@40117|Nitrospirae 40117|Nitrospirae J tRNA synthetases class II (D, K and N) lysS - 6.1.1.6 ko:K04567 ko00970,map00970 M00359,M00360 R03658 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon QTD2_k127_5980364_4 330214.NIDE2054 2.329e-183 579.0 COG1186@1|root,COG1186@2|Bacteria,3J0EX@40117|Nitrospirae 40117|Nitrospirae J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA prfB - - ko:K02836 - - - - ko00000,ko03012 - - - PCRF,RF-1 QTD2_k127_5980364_3 330214.NIDE2055 5.169e-197 629.0 COG0815@1|root,COG0815@2|Bacteria,3J0HA@40117|Nitrospirae 40117|Nitrospirae M Carbon-nitrogen hydrolase lnt - - ko:K03820 - - - - ko00000,ko01000 - GT2 - CN_hydrolase QTD2_k127_5980364_8 330214.NIDE3359 1.584e-33 138.0 COG2885@1|root,COG2885@2|Bacteria,3J17Q@40117|Nitrospirae 2|Bacteria M Belongs to the ompA family pal - - ko:K03640 - - - - ko00000,ko02000 2.C.1.2 - - OmpA QTD2_k127_5980364_10 358396.C445_20845 8.89e-11 67.0 COG4274@1|root,arCOG01119@2157|Archaea,2Y0W5@28890|Euryarchaeota,23XG3@183963|Halobacteria 183963|Halobacteria S GYD domain - - - - - - - - - - - - GYD QTD2_k127_5980364_0 330214.NIDE2073 8.914e-320 991.0 COG1389@1|root,COG1389@2|Bacteria 2|Bacteria L DNA topoisomerase II activity top6B - 5.99.1.3 ko:K03167 - - - - ko00000,ko01000,ko03032 - - - HATPase_c,HATPase_c_3,Topo-VIb_trans QTD2_k127_5980364_1 330214.NIDE2074 2.014e-222 691.0 COG1697@1|root,COG1697@2|Bacteria 2|Bacteria L DNA topoisomerase VI subunit A top6A - 5.99.1.3 ko:K03166 - - - - ko00000,ko01000,ko03032 - - - DUF2220,DUF3322,TP6A_N QTD2_k127_5980364_6 330214.NIDE2084 2.301e-43 160.0 COG0526@1|root,COG0526@2|Bacteria,3J1BP@40117|Nitrospirae 40117|Nitrospirae CO Thioredoxin domain - - - - - - - - - - - - Thioredoxin_3 QTD2_k127_5980364_5 330214.NIDE2085 1.512e-98 336.0 COG3857@1|root,COG3857@2|Bacteria 2|Bacteria L exonuclease activity addB - 3.6.4.12 ko:K16899 - - - - ko00000,ko01000,ko03400 - - - Exonuc_V_gamma,PDDEXK_1,UvrD_C QTD2_k127_5993585_1 1229172.JQFA01000002_gene3719 7.723e-44 161.0 COG0831@1|root,COG0831@2|Bacteria,1G6KQ@1117|Cyanobacteria,1HBG1@1150|Oscillatoriales 1117|Cyanobacteria E Belongs to the urease gamma subunit family ureA - 3.5.1.5 ko:K01430 ko00220,ko00230,ko00791,ko01100,ko01120,map00220,map00230,map00791,map01100,map01120 - R00131 RC02798,RC02806 ko00000,ko00001,ko01000 - - - Urease_gamma QTD2_k127_5993585_2 1541065.JRFE01000013_gene2818 1.928e-41 157.0 COG0832@1|root,COG0832@2|Bacteria,1G82Q@1117|Cyanobacteria,3VMSX@52604|Pleurocapsales 1117|Cyanobacteria E Urease beta subunit - - 3.5.1.5 ko:K01429 ko00220,ko00230,ko00791,ko01100,ko01120,map00220,map00230,map00791,map01100,map01120 - R00131 RC02798,RC02806 ko00000,ko00001,ko01000 - - - Urease_beta QTD2_k127_5993585_0 251229.Chro_5501 9.622e-263 816.0 COG0804@1|root,COG0804@2|Bacteria,1G12D@1117|Cyanobacteria,3VI5B@52604|Pleurocapsales 1117|Cyanobacteria E Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family ureC - 3.5.1.5 ko:K01428 ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120 - R00131 RC02798,RC02806 ko00000,ko00001,ko01000 - - - Amidohydro_1,Urease_alpha QTD2_k127_6039340_2 330214.NIDE1279 2.384e-151 485.0 COG1131@1|root,COG1131@2|Bacteria 2|Bacteria V ATPase activity ccmA - 3.6.3.7 ko:K01990,ko:K09697 ko02010,ko02020,map02010,map02020 M00253,M00254 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1,3.A.1.115 - - ABC_tran QTD2_k127_6039340_3 330214.NIDE1278 2.261e-115 377.0 COG1277@1|root,COG1277@2|Bacteria 2|Bacteria - - yxlG - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC2_membrane_3,ABC_transp_aux QTD2_k127_6039340_0 330214.NIDE1277 1.808e-244 763.0 COG3225@1|root,COG3225@2|Bacteria 2|Bacteria - - gldG - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC_transp_aux QTD2_k127_6039340_4 330214.NIDE1259 3.684e-26 113.0 2AKRW@1|root,31BIT@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_6041952_6 330214.NIDE2489 3.035e-84 286.0 28MEN@1|root,2ZASA@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_6041952_2 330214.NIDE2488 6.093e-190 599.0 28II6@1|root,2Z8JB@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_6041952_0 330214.NIDE2487 0.0 1059.0 COG1070@1|root,COG1070@2|Bacteria 2|Bacteria G xylulokinase activity - - 2.7.1.17 ko:K00854 ko00040,ko01100,map00040,map01100 M00014 R01639 RC00002,RC00538 ko00000,ko00001,ko00002,ko01000 - - - FGGY_C,FGGY_N,MutL QTD2_k127_6041952_9 330214.NIDE2486 8.044e-41 154.0 2EGJW@1|root,33AC1@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_6041952_8 330214.NIDE2559 4.359e-71 245.0 COG0344@1|root,COG0344@2|Bacteria,3J0PK@40117|Nitrospirae 40117|Nitrospirae I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP plsY - 2.3.1.15 ko:K08591 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - G3P_acyltransf QTD2_k127_6041952_7 330214.NIDE2558 6.158e-83 279.0 COG0558@1|root,COG0558@2|Bacteria,3J0NH@40117|Nitrospirae 40117|Nitrospirae I CDP-alcohol phosphatidyltransferase - - 2.7.8.5 ko:K00995 ko00564,ko01100,map00564,map01100 - R01801 RC00002,RC00017,RC02795 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf QTD2_k127_6041952_4 330214.NIDE2557 1.937e-149 480.0 COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,3J0GG@40117|Nitrospirae 40117|Nitrospirae M Belongs to the SIS family. GutQ KpsF subfamily - - 5.3.1.13 ko:K06041 ko00540,ko01100,map00540,map01100 M00063 R01530 RC00541 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CBS,SIS QTD2_k127_6041952_3 330214.NIDE2556 5.093e-152 482.0 COG2877@1|root,COG2877@2|Bacteria,3J0AK@40117|Nitrospirae 40117|Nitrospirae M DAHP synthetase I family kdsA - 2.5.1.55 ko:K01627 ko00540,ko01100,map00540,map01100 M00063 R03254 RC00435 ko00000,ko00001,ko00002,ko01000,ko01005 - - - DAHP_synth_1 QTD2_k127_6041952_1 330214.NIDE2555 0.0 1056.0 COG0504@1|root,COG0504@2|Bacteria,3J0FB@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates pyrG - 6.3.4.2 ko:K01937 ko00240,ko01100,map00240,map01100 M00052 R00571,R00573 RC00010,RC00074 ko00000,ko00001,ko00002,ko01000 - - - CTP_synth_N,GATase QTD2_k127_6041952_5 330214.NIDE2554 1.537e-87 295.0 COG1212@1|root,COG1212@2|Bacteria,3J0NR@40117|Nitrospirae 40117|Nitrospirae M Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria kdsB - 2.7.7.38 ko:K00979 ko00540,ko01100,map00540,map01100 M00063 R03351,R11396 RC00152,RC00910 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_3 QTD2_k127_6063929_4 330214.NIDE1675 3.071e-48 183.0 COG0566@1|root,COG0566@2|Bacteria 2|Bacteria J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family spoU - 2.1.1.170,2.1.1.185 ko:K03218,ko:K03437,ko:K03501 - - - - ko00000,ko01000,ko03009,ko03016,ko03036 - - - SpoU_methylase,SpoU_sub_bind QTD2_k127_6063929_3 330214.NIDE1672 1.46e-50 184.0 COG1396@1|root,COG1396@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - Enterotoxin_a,HTH_3,HTH_31,N_BRCA1_IG QTD2_k127_6063929_2 330214.NIDE1670 3.46e-153 493.0 COG1092@1|root,COG1092@2|Bacteria,3J0IV@40117|Nitrospirae 40117|Nitrospirae J S-adenosylmethionine-dependent methyltransferase - - 2.1.1.191 ko:K06969 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_SAM QTD2_k127_6063929_0 330214.NIDE1669 7.564e-280 867.0 COG3961@1|root,COG3961@2|Bacteria 2|Bacteria GH pyruvate decarboxylase activity ipdC - 4.1.1.74 ko:K04103 ko00380,ko01100,map00380,map01100 - R01974 RC00506 ko00000,ko00001,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N QTD2_k127_6063929_1 330214.NIDE1666 1.403e-167 530.0 COG1215@1|root,COG1215@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups gpgS - 2.4.1.266 ko:K13693 - - - - ko00000,ko01000,ko01003 - GT81 - - QTD2_k127_6077819_4 504728.K649_08065 2.11e-26 112.0 COG1926@1|root,COG1926@2|Bacteria,1WKAM@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus S Phosphoribosyl transferase domain - - - ko:K07100 - - - - ko00000 - - - Pribosyltran QTD2_k127_6077819_5 679197.HMPREF9336_04138 3.473e-16 89.0 COG0589@1|root,COG0589@2|Bacteria,2GMFE@201174|Actinobacteria 201174|Actinobacteria T Belongs to the universal stress protein A family - - - - - - - - - - - - Usp QTD2_k127_6077819_7 118163.Ple7327_3142 1.133e-12 69.0 COG1881@1|root,COG1881@2|Bacteria,1G5SZ@1117|Cyanobacteria,3VN4P@52604|Pleurocapsales 1117|Cyanobacteria G Raf kinase inhibitor-like protein, YbhB YbcL family - - - ko:K06910 - - - - ko00000 - - - PBP QTD2_k127_6077819_1 1121422.AUMW01000027_gene436 9.525e-95 323.0 COG0484@1|root,COG0484@2|Bacteria,1TP00@1239|Firmicutes,248EM@186801|Clostridia,260FH@186807|Peptococcaceae 186801|Clostridia O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins dnaJ - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG QTD2_k127_6077819_0 330214.NIDE3808 8.397e-165 524.0 COG0719@1|root,COG0719@2|Bacteria,3J1E6@40117|Nitrospirae 40117|Nitrospirae O Uncharacterized protein family (UPF0051) - - - ko:K07033 - - - - ko00000 - - - UPF0051 QTD2_k127_6077819_2 1499967.BAYZ01000050_gene2867 2.571e-68 239.0 COG0396@1|root,COG0396@2|Bacteria,2NNYE@2323|unclassified Bacteria 2|Bacteria O ABC transporter sufC - - ko:K09013 - - - - ko00000,ko02000 - - - ABC_tran QTD2_k127_6077819_3 945713.IALB_0239 9.819e-40 153.0 COG2606@1|root,COG2606@2|Bacteria 2|Bacteria S Cys-tRNA(Pro) hydrolase activity - - - ko:K03976,ko:K19055 - - - - ko00000,ko01000,ko03016 - - - tRNA_edit QTD2_k127_6077819_6 330214.NIDE3832 9.308e-14 76.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - - - - - - - - - - - Cytochrome_P460,F5_F8_type_C QTD2_k127_6088795_0 330214.NIDE0511 1.374e-102 341.0 COG0500@1|root,COG2226@2|Bacteria 2|Bacteria Q methyltransferase pmtA - 2.1.1.17,2.1.1.71 ko:K00570 ko00564,ko01100,ko01110,map00564,map01100,map01110 M00091 R01320,R02056,R03424 RC00003,RC00060,RC00181,RC00496 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_11 QTD2_k127_609368_4 330214.NIDE1641 1.999e-47 173.0 COG0307@1|root,COG0307@2|Bacteria,3J0PR@40117|Nitrospirae 40117|Nitrospirae H Lumazine binding domain ribE - 2.5.1.9 ko:K00793 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00066 RC00958,RC00960 ko00000,ko00001,ko00002,ko01000 - - - Lum_binding QTD2_k127_609368_1 330214.NIDE1639 2.05e-196 622.0 COG0477@1|root,COG2814@2|Bacteria,3J1DQ@40117|Nitrospirae 40117|Nitrospirae EGP MFS_1 like family - - - - - - - - - - - - MFS_1 QTD2_k127_609368_2 330214.NIDE1636 2.896e-169 541.0 COG4099@1|root,COG4099@2|Bacteria 2|Bacteria F phospholipase Carboxylesterase - - - - - - - - - - - - Abhydrolase_2,Abhydrolase_8,DLH,Esterase,Peptidase_S9 QTD2_k127_609368_3 330214.NIDE1635 4.702e-133 438.0 COG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,3J0H2@40117|Nitrospirae 40117|Nitrospirae H Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate ribD - 1.1.1.193,3.5.4.26 ko:K11752 ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024 M00125 R03458,R03459 RC00204,RC00933 ko00000,ko00001,ko00002,ko01000 - - - RibD_C,dCMP_cyt_deam_1 QTD2_k127_609368_0 330214.NIDE1634 6.61e-280 866.0 COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,3J101@40117|Nitrospirae 40117|Nitrospirae G Belongs to the PEP-utilizing enzyme family ppdK - 2.7.9.1 ko:K01006 ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200 M00169,M00171,M00172,M00173 R00206 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000 - - - PEP-utilizers,PEP-utilizers_C,PPDK_N QTD2_k127_6102568_5 330214.NIDE0192 9.867e-185 581.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - 1.14.99.50 ko:K18912 ko00340,map00340 - R11013 RC03323,RC03324 ko00000,ko00001,ko01000 - - - FGE-sulfatase,Pkinase QTD2_k127_6102568_17 330214.NIDE0190 4.677e-95 320.0 COG0789@1|root,COG5012@1|root,COG0789@2|Bacteria,COG5012@2|Bacteria 2|Bacteria T cobalamin binding ycgE - - ko:K21089,ko:K21972,ko:K22491 ko02026,map02026 - - - ko00000,ko00001,ko03000 - - - B12-binding,B12-binding_2,MerR_1 QTD2_k127_6102568_4 330214.NIDE3977 6.79e-197 619.0 COG1899@1|root,COG1899@2|Bacteria 2|Bacteria O peptidyl-lysine modification to peptidyl-hypusine - - 2.5.1.46 ko:K00809 - - - - ko00000,ko01000 - - - DS QTD2_k127_6102568_19 330214.NIDE3976 1.671e-75 265.0 COG1651@1|root,COG1651@2|Bacteria 2|Bacteria O Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - - - - - - - - - - SurA_N_3,Thioredoxin_4 QTD2_k127_6102568_3 330214.NIDE3974 2.737e-218 686.0 COG1012@1|root,COG1012@2|Bacteria,3J0YN@40117|Nitrospirae 40117|Nitrospirae C Aldehyde dehydrogenase family - - - - - - - - - - - - Aldedh QTD2_k127_6102568_13 330214.NIDE3973 2.268e-109 355.0 COG1945@1|root,COG1945@2|Bacteria 2|Bacteria I arginine decarboxylase activity pdaD - 4.1.1.19 ko:K02626 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - PvlArgDC QTD2_k127_6102568_7 330214.NIDE3972 1.245e-174 551.0 COG0010@1|root,COG0010@2|Bacteria 2|Bacteria E hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines speB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 ko:K01480 ko00330,ko01100,map00330,map01100 M00133 R01157 RC00024,RC00329 ko00000,ko00001,ko00002,ko01000 - - - Arginase QTD2_k127_6102568_15 330214.NIDE3971 1.082e-102 340.0 COG1187@1|root,COG1187@2|Bacteria,3J0RN@40117|Nitrospirae 40117|Nitrospirae J Belongs to the pseudouridine synthase RsuA family - - 5.4.99.20,5.4.99.21,5.4.99.22 ko:K06178,ko:K06181,ko:K06182 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 QTD2_k127_6102568_16 330214.NIDE3970 6.198e-101 335.0 COG2972@1|root,COG2972@2|Bacteria 2|Bacteria T Histidine kinase VVA0018 - - - - - - - - - - - HATPase_c,His_kinase QTD2_k127_6102568_0 330214.NIDE3968 2.835e-290 899.0 COG2274@1|root,COG2274@2|Bacteria 2|Bacteria V protein secretion by the type I secretion system - - - ko:K02021 - - - - ko00000,ko02000 3.A.1.106,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21 - - ABC_membrane,ABC_tran QTD2_k127_6102568_2 330214.NIDE3967 7.137e-230 725.0 COG1538@1|root,COG1538@2|Bacteria 2|Bacteria MU efflux transmembrane transporter activity - - - - - - - - - - - - OEP QTD2_k127_6102568_1 330214.NIDE3966 3.51e-261 811.0 COG0845@1|root,COG0845@2|Bacteria 2|Bacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family cvaA - - - - - - - - - - - Biotin_lipoyl_2,HlyD_3,OEP QTD2_k127_6102568_20 330214.NIDE3965 1.257e-69 241.0 COG0041@1|root,COG0041@2|Bacteria,3J0P8@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) purE - 5.4.99.18 ko:K01588 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R07405 RC01947 ko00000,ko00001,ko00002,ko01000 - - - AIRC QTD2_k127_6102568_12 330214.NIDE3964 4.803e-136 445.0 COG0026@1|root,COG0026@2|Bacteria,3J11N@40117|Nitrospirae 40117|Nitrospirae F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) purK - 6.3.4.18 ko:K01589 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R07404 RC01927 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp QTD2_k127_6102568_6 330214.NIDE3963 1.096e-181 589.0 COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,3J10H@40117|Nitrospirae 40117|Nitrospirae T Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_9,Response_reg QTD2_k127_6102568_14 330214.NIDE3962 2.745e-109 362.0 COG0705@1|root,COG0705@2|Bacteria,3J16E@40117|Nitrospirae 40117|Nitrospirae S Rhomboid family - - - - - - - - - - - - Rhomboid QTD2_k127_6102568_11 330214.NIDE3961 5.151e-139 447.0 COG2404@1|root,COG2404@2|Bacteria,3J12M@40117|Nitrospirae 40117|Nitrospirae S hydrolase activity, acting on ester bonds - - - - - - - - - - - - - QTD2_k127_6102568_8 330214.NIDE3960 1.232e-158 507.0 COG1611@1|root,COG1611@2|Bacteria,3J169@40117|Nitrospirae 40117|Nitrospirae S Possible lysine decarboxylase - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox QTD2_k127_6102568_21 330214.NIDE3959 3.038e-68 241.0 COG2905@1|root,COG2905@2|Bacteria 2|Bacteria T signal-transduction protein containing cAMP-binding and CBS domains - - 1.1.1.42,1.3.1.85 ko:K00031,ko:K14446 ko00020,ko00480,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 M00009,M00010,M00173,M00373,M00740 R00267,R00268,R01899,R09291 RC00001,RC00084,RC00114,RC00626,RC02481,RC02801 br01601,ko00000,ko00001,ko00002,ko01000 - - - CBS,GGDEF,PAS_9 QTD2_k127_6102568_10 330214.NIDE3958 5.659e-142 467.0 COG3220@1|root,COG3220@2|Bacteria,3J130@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF692) - - - - - - - - - - - - DUF692 QTD2_k127_6102568_9 330214.NIDE3957 2.251e-152 493.0 COG0042@1|root,COG0042@2|Bacteria 2|Bacteria J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines dus - - ko:K05541 - - - - ko00000,ko01000,ko03016 - - - Dus QTD2_k127_6102568_22 330214.NIDE3956 3.812e-59 211.0 COG0424@1|root,COG0424@2|Bacteria 2|Bacteria D maF-like protein maf GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0030145,GO:0030312,GO:0036218,GO:0036221,GO:0042802,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0047429,GO:0071944 2.1.1.190 ko:K03215,ko:K06287 - - - - ko00000,ko01000,ko03009 - - - Maf QTD2_k127_6125805_0 330214.NIDE2536 0.0 1022.0 COG0021@1|root,COG0021@2|Bacteria,3J0MM@40117|Nitrospirae 40117|Nitrospirae G Transketolase, pyrimidine binding domain - - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C,Transketolase_N QTD2_k127_6125805_2 330214.NIDE2535 2.061e-104 345.0 COG0664@1|root,COG0664@2|Bacteria,3J18E@40117|Nitrospirae 40117|Nitrospirae K helix_turn_helix, cAMP Regulatory protein - - - - - - - - - - - - HTH_Crp_2,cNMP_binding QTD2_k127_6125805_1 330214.NIDE2534 1.319e-126 409.0 COG2132@1|root,COG2132@2|Bacteria 2|Bacteria Q Multicopper oxidase aniA - 1.16.3.3,1.7.2.1 ko:K00368,ko:K22349 ko00910,ko01120,map00910,map01120 M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 - - - Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3,Cupredoxin_1 QTD2_k127_615838_10 1232410.KI421415_gene3096 1.836e-10 68.0 2E20Q@1|root,32X8P@2|Bacteria,1N3P4@1224|Proteobacteria,42TSV@68525|delta/epsilon subdivisions,2WQ7Q@28221|Deltaproteobacteria 28221|Deltaproteobacteria - - - - - - - - - - - - - - - QTD2_k127_615838_9 56780.SYN_01702 1.254e-16 87.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M03@68525|delta/epsilon subdivisions,2WIT0@28221|Deltaproteobacteria 28221|Deltaproteobacteria T two component, sigma54 specific, transcriptional regulator, Fis family - - - ko:K07712 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_615838_3 330214.NIDE1256 6.347e-129 426.0 COG2204@1|root,COG2204@2|Bacteria,3J10B@40117|Nitrospirae 40117|Nitrospirae T Sigma-54 interaction domain - - - ko:K07714 ko02020,map02020 M00500 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_615838_4 443144.GM21_2683 6.206e-46 186.0 COG4191@1|root,COG4191@2|Bacteria,1R9AK@1224|Proteobacteria,42Q2G@68525|delta/epsilon subdivisions,2WM8Y@28221|Deltaproteobacteria,43RXW@69541|Desulfuromonadales 28221|Deltaproteobacteria T histidine kinase, HAMP - - - - - - - - - - - - HAMP,HATPase_c,HisKA QTD2_k127_615838_12 1401065.HMPREF2130_09095 0.0007132 48.0 COG0745@1|root,COG0745@2|Bacteria,1MY5Y@1224|Proteobacteria,2VI0W@28216|Betaproteobacteria,3T29Z@506|Alcaligenaceae 28216|Betaproteobacteria K Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain basR - - ko:K02483 - - - - ko00000,ko02022 - - - Response_reg,Trans_reg_C QTD2_k127_615838_0 330214.NIDE3195 6.189e-162 516.0 COG0438@1|root,COG0438@2|Bacteria,3J120@40117|Nitrospirae 40117|Nitrospirae M Glycosyltransferase Family 4 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 QTD2_k127_615838_7 697282.Mettu_3272 1.849e-34 143.0 COG0457@1|root,COG0457@2|Bacteria,1MWRF@1224|Proteobacteria,1S182@1236|Gammaproteobacteria 1236|Gammaproteobacteria K Pfam Tetratricopeptide - - - - - - - - - - - - TPR_10,TPR_12,TPR_7 QTD2_k127_615838_1 330214.NIDE3194 1.249e-154 499.0 COG0477@1|root,COG2814@2|Bacteria,3J0RT@40117|Nitrospirae 40117|Nitrospirae EGP Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - - - - - - - - - - MFS_3 QTD2_k127_615838_6 330214.NIDE3193 1.737e-34 143.0 COG2823@1|root,COG3170@1|root,COG2823@2|Bacteria,COG3170@2|Bacteria 2|Bacteria NU translation initiation factor activity tolA - 2.7.13.3 ko:K03407,ko:K03646,ko:K04065,ko:K06596,ko:K07277,ko:K12065,ko:K13593 ko02020,ko02025,ko02030,ko04112,map02020,map02025,map02030,map04112 M00506,M00507 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02022,ko02035,ko02044,ko03029 1.B.33,2.C.1.2,3.A.7.11.1 - - BON,TrbI QTD2_k127_615838_2 330214.NIDE3192 2.479e-130 428.0 COG0477@1|root,COG2814@2|Bacteria 2|Bacteria EGP Major facilitator Superfamily - - - - - - - - - - - - MFS_1,MFS_3 QTD2_k127_615838_5 330214.NIDE3191 2.247e-38 146.0 COG3408@1|root,COG3408@2|Bacteria,3J0Z8@40117|Nitrospirae 40117|Nitrospirae G Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - - - - - - - - - - GDE_C,GDE_N_bis QTD2_k127_616788_6 330214.NIDE1294 1.834e-18 85.0 COG0050@1|root,COG0050@2|Bacteria,3J0DG@40117|Nitrospirae 40117|Nitrospirae J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis - - - ko:K02358 - - - - ko00000,ko03012,ko03029,ko04147 - - - GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3 QTD2_k127_616788_2 330214.NIDE1308 0.0 1267.0 COG0480@1|root,COG0480@2|Bacteria,3J0EK@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome - - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 QTD2_k127_616788_5 289376.THEYE_A1450 1.488e-62 218.0 COG0049@1|root,COG0049@2|Bacteria,3J0HK@40117|Nitrospirae 40117|Nitrospirae J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA rpsG GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02992 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S7 QTD2_k127_616788_4 330214.NIDE1306 1.403e-67 230.0 COG0048@1|root,COG0048@2|Bacteria,3J0IU@40117|Nitrospirae 40117|Nitrospirae J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit rpsL GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02950 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosom_S12_S23 QTD2_k127_616788_0 330214.NIDE1304 0.0 2568.0 COG0086@1|root,COG0086@2|Bacteria,3J0BT@40117|Nitrospirae 40117|Nitrospirae K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 QTD2_k127_616788_1 1232410.KI421428_gene1223 0.0 1620.0 COG0085@1|root,COG0085@2|Bacteria,1MUC4@1224|Proteobacteria,43DMZ@68525|delta/epsilon subdivisions,2WIW5@28221|Deltaproteobacteria,43SCN@69541|Desulfuromonadales 28221|Deltaproteobacteria K RNA polymerase beta subunit external 1 domain rpoB GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03043 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 QTD2_k127_616788_3 330214.NIDE1302 7.151e-146 467.0 COG0222@1|root,COG0244@1|root,COG0222@2|Bacteria,COG0244@2|Bacteria,3J0NQ@40117|Nitrospirae 40117|Nitrospirae J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation rplL - - ko:K02935 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L12,Ribosomal_L12_N QTD2_k127_6199655_3 330214.NIDE0825 9.049e-63 217.0 COG1144@1|root,COG1144@2|Bacteria,3J1A9@40117|Nitrospirae 40117|Nitrospirae C Oxidoreductase - - - - - - - - - - - - - QTD2_k127_6199655_1 330214.NIDE0826 7.935e-155 490.0 COG0226@1|root,COG0226@2|Bacteria,3J0YH@40117|Nitrospirae 2|Bacteria P Evidence 2a Function of homologous gene experimentally demonstrated in an other organism forD - - ko:K02040 ko02010,ko02020,ko05152,map02010,map02020,map05152 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - CO_dh,PBP_like_2 QTD2_k127_6199655_0 330214.NIDE0827 7.374e-266 822.0 COG0674@1|root,COG0674@2|Bacteria,3J105@40117|Nitrospirae 40117|Nitrospirae C Pyruvate:ferredoxin oxidoreductase core domain II - - 1.2.7.1 ko:K00169 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - PFOR_II,POR_N QTD2_k127_6199655_2 330214.NIDE0829 5.841e-97 330.0 COG5459@1|root,COG5459@2|Bacteria,3J16W@40117|Nitrospirae 40117|Nitrospirae J Mitochondrial small ribosomal subunit Rsm22 - - - - - - - - - - - - Rsm22 QTD2_k127_6201129_3 330214.NIDE2926 7.067e-77 260.0 COG2812@1|root,COG2812@2|Bacteria 2|Bacteria L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity holB - 2.7.7.7 ko:K02341 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNApol3-delta_C QTD2_k127_6201129_4 330214.NIDE2924 1.222e-60 216.0 COG0125@1|root,COG0125@2|Bacteria,3J0NI@40117|Nitrospirae 40117|Nitrospirae F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis tmk - 2.7.4.9 ko:K00943 ko00240,ko01100,map00240,map01100 M00053 R02094,R02098 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Thymidylate_kin QTD2_k127_6201129_1 330214.NIDE2923 4.721e-104 342.0 COG2928@1|root,COG2928@2|Bacteria,3J0R2@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF502) - - - - - - - - - - - - DUF502 QTD2_k127_6201129_0 401053.AciPR4_1336 1.39e-118 410.0 COG1207@1|root,COG1207@2|Bacteria,3Y3SI@57723|Acidobacteria,2JIVK@204432|Acidobacteriia 204432|Acidobacteriia M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain glmU - 2.3.1.157,2.7.7.23 ko:K04042 ko00520,ko01100,ko01130,map00520,map01100,map01130 M00362 R00416,R05332 RC00002,RC00004,RC00166 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transf_3 QTD2_k127_6201129_2 330214.NIDE2921 1.137e-77 261.0 COG0449@1|root,COG0449@2|Bacteria,3J0CP@40117|Nitrospirae 40117|Nitrospirae M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source glmS - 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - GATase_6,SIS QTD2_k127_6202466_4 1255043.TVNIR_1921 7.681e-07 58.0 COG4970@1|root,COG4970@2|Bacteria,1NBWI@1224|Proteobacteria,1S5MN@1236|Gammaproteobacteria,1WY85@135613|Chromatiales 135613|Chromatiales U General secretion pathway protein H - - - ko:K02457 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - GspH,N_methyl QTD2_k127_6202466_2 269799.Gmet_3367 6.241e-52 188.0 COG2165@1|root,COG2165@2|Bacteria,1RDX2@1224|Proteobacteria,42SFB@68525|delta/epsilon subdivisions,2WP3B@28221|Deltaproteobacteria 28221|Deltaproteobacteria U general secretion pathway protein G gspG - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSG QTD2_k127_6202466_1 483219.LILAB_20230 1.971e-105 357.0 COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,42MH9@68525|delta/epsilon subdivisions,2WJE0@28221|Deltaproteobacteria,2YTZT@29|Myxococcales 28221|Deltaproteobacteria U General secretion pathway protein F gspF - - ko:K02455,ko:K02653 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02035,ko02044 3.A.15,3.A.15.2 - - T2SSF QTD2_k127_6202466_0 378806.STAUR_3194 4.211e-203 647.0 COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,42M51@68525|delta/epsilon subdivisions,2WIPP@28221|Deltaproteobacteria,2YUKY@29|Myxococcales 28221|Deltaproteobacteria NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB gspE - - ko:K02454 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSE,T2SSE_N QTD2_k127_6202466_3 404589.Anae109_0731 2.17e-17 89.0 COG3031@1|root,COG3031@2|Bacteria,1PUWN@1224|Proteobacteria,42T73@68525|delta/epsilon subdivisions,2WR4E@28221|Deltaproteobacteria 28221|Deltaproteobacteria U Domain present in PSD-95, Dlg, and ZO-1/2. - - - ko:K02452 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSC QTD2_k127_6204227_1 330214.NIDE3081 1.676e-145 462.0 COG3253@1|root,COG3253@2|Bacteria 2|Bacteria S peroxidase activity - - - - - - - - - - - - Chlor_dismutase QTD2_k127_6204227_3 330214.NIDE3609 3.441e-89 303.0 COG4221@1|root,COG4221@2|Bacteria 2|Bacteria IQ oxidoreductase activity - - - - - - - - - - - - adh_short QTD2_k127_6204227_0 330214.NIDE2415 1.444e-216 684.0 COG0248@1|root,COG2206@1|root,COG0248@2|Bacteria,COG2206@2|Bacteria,3J0K5@40117|Nitrospirae 2|Bacteria FP Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology ppx - 3.6.1.11,3.6.1.40 ko:K01524,ko:K07012 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000,ko02048 - - - HD,Helicase_C,Ppx-GppA,Response_reg QTD2_k127_6204227_4 485913.Krac_9228 3.355e-82 283.0 COG0125@1|root,COG0125@2|Bacteria 2|Bacteria F dTDP biosynthetic process tmk GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.1.1.45,2.7.4.9,4.1.1.19 ko:K00560,ko:K00943,ko:K01585 ko00240,ko00330,ko00670,ko01100,ko01523,map00240,map00330,map00670,map01100,map01523 M00053,M00133 R00566,R02094,R02098,R02101 RC00002,RC00219,RC00299,RC00332 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS00680,iJN746.PP_3363,iNJ661.Rv3247c AAA_33,Thymidylate_kin QTD2_k127_6204227_6 697281.Mahau_1366 1.659e-64 229.0 COG0125@1|root,COG0125@2|Bacteria,1V0EA@1239|Firmicutes,24AIX@186801|Clostridia,42I1F@68295|Thermoanaerobacterales 186801|Clostridia F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis - - 2.7.4.9 ko:K00943 ko00240,ko01100,map00240,map01100 M00053 R02094,R02098 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Thymidylate_kin QTD2_k127_6204227_8 330214.NIDE2414 2.529e-45 170.0 COG2062@1|root,COG2062@2|Bacteria 2|Bacteria T phosphohistidine phosphatase, SixA sixA - - ko:K08296 - - - - ko00000,ko01000 - - - His_Phos_1 QTD2_k127_6220798_5 330214.NIDE0257 4.234e-67 233.0 COG3215@1|root,COG3215@2|Bacteria 2|Bacteria NU PilZ domain - - - ko:K02676 - - - - ko00000,ko02035,ko02044 - - - PilZ,Response_reg QTD2_k127_6220798_4 330214.NIDE0258 9.122e-74 253.0 COG3215@1|root,COG3215@2|Bacteria 2|Bacteria NU PilZ domain - - - ko:K02676 - - - - ko00000,ko02035,ko02044 - - - PilZ,Response_reg QTD2_k127_6220798_0 330214.NIDE0260 4.074e-250 775.0 COG1219@1|root,COG1219@2|Bacteria,3J0AM@40117|Nitrospirae 40117|Nitrospirae O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP clpX GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - ko:K03544 ko04112,map04112 - - - ko00000,ko00001,ko03110 - - - AAA_2,ClpB_D2-small,zf-C4_ClpX QTD2_k127_6220798_3 330214.NIDE0261 1.289e-121 392.0 COG0740@1|root,COG0740@2|Bacteria,3J0A3@40117|Nitrospirae 40117|Nitrospirae O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins clpP - 3.4.21.92 ko:K01358 ko04112,ko04212,map04112,map04212 - - - ko00000,ko00001,ko01000,ko01002 - - - CLP_protease QTD2_k127_6220798_1 330214.NIDE0262 2.465e-199 630.0 COG0544@1|root,COG0544@2|Bacteria,3J12E@40117|Nitrospirae 40117|Nitrospirae O Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase tig GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - ko:K03545 - - - - ko00000 - - - Trigger_C,Trigger_N QTD2_k127_6220798_2 330214.NIDE0263 2.171e-137 445.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - DUF4132,HEAT_2 QTD2_k127_6262643_0 330214.NIDE2519 2.066e-210 658.0 COG1690@1|root,COG1690@2|Bacteria,3J0X0@40117|Nitrospirae 40117|Nitrospirae S tRNA-splicing ligase RtcB rtcB - 6.5.1.3 ko:K14415 - - - - ko00000,ko01000,ko03016 - - - RtcB QTD2_k127_6262643_1 330214.NIDE2518 8.597e-47 173.0 COG1371@1|root,COG1371@2|Bacteria 2|Bacteria J PFAM Archease protein family (DUF101 UPF0211) - - - - - - - - - - - - Archease QTD2_k127_6262643_2 330214.NIDE2517 8.017e-13 68.0 COG0479@1|root,COG0479@2|Bacteria,3J14K@40117|Nitrospirae 40117|Nitrospirae C Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family - - 1.3.5.1,1.3.5.4 ko:K00240 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - Fer2_3,Fer4_10 QTD2_k127_6283123_1 330214.NIDE3548 5.82e-188 589.0 COG0104@1|root,COG0104@2|Bacteria,3J0FV@40117|Nitrospirae 40117|Nitrospirae F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt QTD2_k127_6283123_0 330214.NIDE3551 8.57e-320 986.0 COG0488@1|root,COG0488@2|Bacteria,3J0W6@40117|Nitrospirae 40117|Nitrospirae S ABC transporter - - - ko:K06158 - - - - ko00000,ko03012 - - - ABC_tran,ABC_tran_Xtn QTD2_k127_6283123_2 1499967.BAYZ01000028_gene1352 4.155e-140 458.0 COG2256@1|root,COG2256@2|Bacteria,2NNTG@2323|unclassified Bacteria 2|Bacteria L MgsA AAA+ ATPase C terminal rarA - - ko:K07478 - - - - ko00000 - - - AAA,AAA_assoc_2,MgsA_C,RuvB_N QTD2_k127_6283123_3 330214.NIDE3554 2.223e-94 316.0 COG0596@1|root,COG0596@2|Bacteria 2|Bacteria S hydrolase activity, acting on ester bonds pcaD - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4 QTD2_k127_6283123_5 330214.NIDE3555 3.113e-08 55.0 COG0302@1|root,COG0302@2|Bacteria,3J0Q0@40117|Nitrospirae 40117|Nitrospirae F GTP cyclohydrolase I folE GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 ko:K01495 ko00790,ko01100,map00790,map01100 M00126,M00841,M00842,M00843 R00428,R04639,R05046,R05048 RC00263,RC00294,RC00323,RC00945,RC01188 ko00000,ko00001,ko00002,ko01000 - - - GTP_cyclohydroI QTD2_k127_6309417_3 330214.NIDE0690 4.983e-135 434.0 COG4772@1|root,COG4772@2|Bacteria 2|Bacteria P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec QTD2_k127_6309417_6 330214.NIDE0691 1.698e-79 270.0 COG2094@1|root,COG2094@2|Bacteria 2|Bacteria L Belongs to the DNA glycosylase MPG family mpg GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.2.2.21 ko:K03652 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Pur_DNA_glyco QTD2_k127_6309417_0 330214.NIDE0694 1.521e-266 833.0 COG2203@1|root,COG4191@1|root,COG2203@2|Bacteria,COG4191@2|Bacteria,3J117@40117|Nitrospirae 2|Bacteria T His Kinase A (phosphoacceptor) domain - - 2.7.13.3 ko:K02482 - - - - ko00000,ko01000,ko01001,ko02022 - - - GAF,GAF_2,HATPase_c,HisKA QTD2_k127_6309417_8 330214.NIDE0695 1.34e-39 152.0 COG1950@1|root,COG1950@2|Bacteria,3J19X@40117|Nitrospirae 40117|Nitrospirae S Mycobacterial 4 TMS phage holin, superfamily IV - - - ko:K08972 - - - - ko00000 - - - Phage_holin_4_2 QTD2_k127_6309417_5 330214.NIDE0698 1.934e-85 287.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c cycA - - ko:K03611 - - - - ko00000,ko03110 5.A.2.1 - - Cytochrom_C,Cytochrome_CBB3 QTD2_k127_6309417_4 330214.NIDE0699 2.86e-106 352.0 COG2324@1|root,COG2324@2|Bacteria,3J195@40117|Nitrospirae 40117|Nitrospirae S Carotenoid biosynthesis protein - - - - - - - - - - - - Caroten_synth QTD2_k127_6309417_1 330214.NIDE0700 2.639e-179 564.0 COG0451@1|root,COG0451@2|Bacteria,3J0T9@40117|Nitrospirae 40117|Nitrospirae M NmrA-like family - - 1.1.1.219 ko:K00091 - - - - ko00000,ko01000 - - - Epimerase QTD2_k127_6309417_2 330214.NIDE0701 5.865e-151 478.0 COG0142@1|root,COG0142@2|Bacteria,3J0H1@40117|Nitrospirae 40117|Nitrospirae H Polyprenyl synthetase - - 2.5.1.1,2.5.1.10,2.5.1.29 ko:K13789 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00364,M00366 R01658,R02003,R02061 RC00279 ko00000,ko00001,ko00002,ko01000,ko01006 - - - polyprenyl_synt QTD2_k127_633970_2 330214.NIDE1685 2.49e-05 54.0 COG1538@1|root,COG1538@2|Bacteria,3J140@40117|Nitrospirae 40117|Nitrospirae MU Outer membrane efflux protein - - - - - - - - - - - - OEP QTD2_k127_633970_1 330214.NIDE1686 8.204e-110 369.0 COG0845@1|root,COG0845@2|Bacteria,3J13H@40117|Nitrospirae 40117|Nitrospirae M HlyD family secretion protein - - - - - - - - - - - - HlyD_D23 QTD2_k127_633970_0 234267.Acid_7568 7.671e-155 514.0 COG0841@1|root,COG0841@2|Bacteria,3Y2RX@57723|Acidobacteria 57723|Acidobacteria V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - - - - - - - - - - ACR_tran QTD2_k127_6359435_26 330214.NIDE1848 1.831e-61 214.0 COG3055@1|root,COG3055@2|Bacteria 2|Bacteria G Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - - - - - - - - - - DUF3386,Kelch_1,Kelch_4,Kelch_5,fn3 QTD2_k127_6359435_24 330214.NIDE1847 1.779e-68 234.0 2DQ7E@1|root,3353C@2|Bacteria,3J1EM@40117|Nitrospirae 40117|Nitrospirae S Domain of unknown function (DUF5069) - - - - - - - - - - - - DUF5069 QTD2_k127_6359435_7 234267.Acid_3842 6.472e-182 581.0 COG1858@1|root,COG1858@2|Bacteria,3Y6XX@57723|Acidobacteria 57723|Acidobacteria C cytochrome C peroxidase - - - - - - - - - - - - - QTD2_k127_6359435_18 330214.NIDE1828 1.883e-97 330.0 COG1512@1|root,COG1512@2|Bacteria 2|Bacteria S TPM domain - - - ko:K06872 - - - - ko00000 - - - TPM_phosphatase QTD2_k127_6359435_21 330214.NIDE1827 4.728e-80 274.0 COG1708@1|root,COG1708@2|Bacteria 2|Bacteria S nucleotidyltransferase activity ant1 - 2.7.7.47 ko:K00984,ko:K19279 - - - - ko00000,ko01000,ko01504 - - - DUF4111,NTP_transf_2,UPF0158 QTD2_k127_6359435_9 330214.NIDE1826 5.277e-168 538.0 COG0654@1|root,COG0654@2|Bacteria,3J16C@40117|Nitrospirae 40117|Nitrospirae C FAD binding domain - - - - - - - - - - - - FAD_binding_3 QTD2_k127_6359435_25 330214.NIDE1825 3.934e-68 236.0 COG1502@1|root,COG1502@2|Bacteria,3J1DV@40117|Nitrospirae 40117|Nitrospirae I PLD-like domain - - - - - - - - - - - - PLDc_2 QTD2_k127_6359435_31 330214.NIDE1822 2.764e-27 111.0 COG2104@1|root,COG2104@2|Bacteria 2|Bacteria H thiamine diphosphate biosynthetic process thiS - - ko:K03154 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS QTD2_k127_6359435_8 330214.NIDE1821 1.156e-172 544.0 COG0031@1|root,COG0031@2|Bacteria,3J0HD@40117|Nitrospirae 40117|Nitrospirae E Pyridoxal-phosphate dependent enzyme - - 2.5.1.47 ko:K01738,ko:K12339 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03132,R03601,R04859 RC00020,RC02814,RC02821,RC02876 ko00000,ko00001,ko00002,ko01000 - - - PALP QTD2_k127_6359435_13 330214.NIDE1820 3.351e-147 470.0 COG0476@1|root,COG0476@2|Bacteria,3J0WD@40117|Nitrospirae 40117|Nitrospirae H ThiF family - - 2.7.7.80 ko:K21029 ko04122,map04122 - R07459 RC00043 ko00000,ko00001,ko01000 - - - ThiF QTD2_k127_6359435_4 330214.NIDE1819 2.474e-252 781.0 COG0498@1|root,COG0498@2|Bacteria,3J0FZ@40117|Nitrospirae 40117|Nitrospirae E Pyridoxal-phosphate dependent enzyme thrC1 - 4.2.3.1 ko:K01733 ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230 M00018 R01466,R05086 RC00017,RC00526 ko00000,ko00001,ko00002,ko01000 - - - PALP QTD2_k127_6359435_28 330214.NIDE1818 1.539e-40 151.0 COG1977@1|root,COG1977@2|Bacteria,3J0T2@40117|Nitrospirae 40117|Nitrospirae H ThiS family - - - ko:K03636 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS QTD2_k127_6359435_29 330214.NIDE1817 3.83e-37 142.0 COG1135@1|root,COG1135@2|Bacteria,3J0VT@40117|Nitrospirae 40117|Nitrospirae P NIL - - - - - - - - - - - - NIL QTD2_k127_6359435_12 330214.NIDE1816 8.407e-150 477.0 COG0476@1|root,COG0476@2|Bacteria,3J0X5@40117|Nitrospirae 40117|Nitrospirae H ThiF family - - 2.7.7.80 ko:K21029 ko04122,map04122 - R07459 RC00043 ko00000,ko00001,ko01000 - - - ThiF QTD2_k127_6359435_22 330214.NIDE1815 3.4e-76 258.0 COG1310@1|root,COG1310@2|Bacteria,3J0U8@40117|Nitrospirae 40117|Nitrospirae S JAB/MPN domain - - 3.13.1.6 ko:K21140 ko04122,map04122 - R11524 RC00064,RC00090 ko00000,ko00001,ko01000 - - - Prok-JAB QTD2_k127_6359435_3 330214.NIDE1807 4.364e-256 800.0 COG1132@1|root,COG1132@2|Bacteria,3J0X8@40117|Nitrospirae 40117|Nitrospirae V Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - - ko:K06147,ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran QTD2_k127_6359435_20 330214.NIDE1806 5.322e-85 284.0 COG0242@1|root,COG0242@2|Bacteria,3J146@40117|Nitrospirae 40117|Nitrospirae J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions - - 3.5.1.88 ko:K01462 - - - - ko00000,ko01000 - - - Pep_deformylase QTD2_k127_6359435_17 330214.NIDE1805 1.147e-104 346.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT_2,zf-HC2 QTD2_k127_6359435_0 330214.NIDE1804 0.0 1550.0 COG3696@1|root,COG3696@2|Bacteria,3J0ZR@40117|Nitrospirae 40117|Nitrospirae P AcrB/AcrD/AcrF family - - - ko:K15726 - - - - ko00000,ko02000 2.A.6.1.2 - - ACR_tran QTD2_k127_6359435_1 330214.NIDE1804 0.0 1456.0 COG3696@1|root,COG3696@2|Bacteria,3J0ZR@40117|Nitrospirae 40117|Nitrospirae P AcrB/AcrD/AcrF family - - - ko:K15726 - - - - ko00000,ko02000 2.A.6.1.2 - - ACR_tran QTD2_k127_6359435_14 330214.NIDE1803 4.797e-146 474.0 COG0845@1|root,COG0845@2|Bacteria 2|Bacteria M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K15727 - - - - ko00000,ko02000 8.A.1.2.1 - - HlyD_D23 QTD2_k127_6359435_6 330214.NIDE1802 2.345e-192 610.0 COG1538@1|root,COG1538@2|Bacteria,3J1F2@40117|Nitrospirae 40117|Nitrospirae MU Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K15725 - - - - ko00000,ko02000 1.B.17.2.2 - - OEP QTD2_k127_6359435_11 330214.NIDE1801 3.479e-159 509.0 COG0687@1|root,COG0687@2|Bacteria 2|Bacteria E Required for the activity of the bacterial periplasmic transport system of putrescine potD - - ko:K11069,ko:K11070 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.1 - iSB619.SA_RS05395 BPD_transp_1,SBP_bac_6,SBP_bac_8 QTD2_k127_6359435_19 330214.NIDE1800 1.163e-88 299.0 COG1177@1|root,COG1177@2|Bacteria 2|Bacteria P DNA import into cell involved in transformation potC - - ko:K11070 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.1 - - BPD_transp_1 QTD2_k127_6359435_16 330214.NIDE1799 4.375e-109 362.0 COG1176@1|root,COG1176@2|Bacteria 2|Bacteria P putrescine transport potB - - ko:K11071 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.1 - - BPD_transp_1 QTD2_k127_6359435_15 330214.NIDE1798 7.018e-112 372.0 COG3842@1|root,COG3842@2|Bacteria 2|Bacteria P ATPase activity potA - 3.6.3.31 ko:K11072 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.11.1 - - ABC_tran,TOBE_2 QTD2_k127_6359435_5 330214.NIDE1796 4.028e-224 699.0 COG0448@1|root,COG0448@2|Bacteria,3J0BI@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans glgC - 2.7.7.27 ko:K00975 ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026 M00565 R00948 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase QTD2_k127_6359435_2 330214.NIDE1795 5.941e-286 889.0 COG4581@1|root,COG4581@2|Bacteria 2|Bacteria L dead DEAH box helicase helY GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019439,GO:0030312,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - ko:K03727 - - - - ko00000,ko01000 - - - DEAD,DSHCT,Helicase_C,rRNA_proc-arch QTD2_k127_6359435_10 330214.NIDE1794 4.889e-160 510.0 COG4581@1|root,COG4581@2|Bacteria 2|Bacteria L dead DEAH box helicase helY GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019439,GO:0030312,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - ko:K03727 - - - - ko00000,ko01000 - - - DEAD,DSHCT,Helicase_C,rRNA_proc-arch QTD2_k127_6359435_23 330214.NIDE1793 6.042e-74 261.0 COG4571@1|root,COG4571@2|Bacteria 2|Bacteria M Outer membrane protease ompT GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009279,GO:0016020,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031975,GO:0043170,GO:0044238,GO:0044425,GO:0044462,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564 3.4.23.48,3.4.23.49 ko:K01355,ko:K08477,ko:K08566,ko:K13520 ko01503,ko02020,map01503,map02020 M00744 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko01504 - - - Omptin QTD2_k127_6359435_36 404380.Gbem_1080 1.943e-07 61.0 COG3979@1|root,COG4447@1|root,COG3979@2|Bacteria,COG4447@2|Bacteria 2|Bacteria S cellulose binding chiA GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005575,GO:0005623,GO:0008843,GO:0016787,GO:0016798,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 3.2.1.132,3.2.1.14,3.2.1.17 ko:K01183,ko:K01233,ko:K13381 ko00520,ko01100,map00520,map01100 - R01206,R02334,R02833 RC00467 ko00000,ko00001,ko01000 - CBM15,GH18 - CBM_5_12,Glyco_hydro_18,LPMO_10,fn3 QTD2_k127_6366701_2 211165.AJLN01000098_gene5167 4.781e-08 54.0 COG2041@1|root,COG2041@2|Bacteria,1G2WA@1117|Cyanobacteria,1JJG9@1189|Stigonemataceae 1117|Cyanobacteria S Oxidoreductase molybdopterin binding domain - - - - - - - - - - - - Oxidored_molyb QTD2_k127_6366701_1 1131813.AQVT01000001_gene2079 2.317e-39 155.0 COG4117@1|root,COG4117@2|Bacteria,1MX97@1224|Proteobacteria,2U0ZF@28211|Alphaproteobacteria,1JV53@119045|Methylobacteriaceae 28211|Alphaproteobacteria C Prokaryotic cytochrome b561 MA20_43575 - - - - - - - - - - - Ni_hydr_CYTB QTD2_k127_6366701_0 682795.AciX8_1529 2.962e-53 194.0 COG1595@1|root,COG1595@2|Bacteria,3Y4CA@57723|Acidobacteria,2JJ0Z@204432|Acidobacteriia 204432|Acidobacteriia K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 QTD2_k127_6366701_3 264732.Moth_1842 6.086e-08 62.0 COG5662@1|root,COG5662@2|Bacteria,1VKS6@1239|Firmicutes,24VD1@186801|Clostridia 186801|Clostridia K Putative zinc-finger - - - - - - - - - - - - zf-HC2 QTD2_k127_637316_4 1123288.SOV_3c01180 1.405e-09 61.0 COG0642@1|root,COG2205@2|Bacteria,1TQHB@1239|Firmicutes,4H2EB@909932|Negativicutes 909932|Negativicutes T Osmosensitive K+ channel His kinase sensor domain - - 2.7.13.3 ko:K07646 ko02020,map02020 M00454 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DUF4118,GAF_3,HATPase_c,HisKA,KdpD,Usp QTD2_k127_637316_0 1238182.C882_2436 4.458e-69 244.0 COG0745@1|root,COG0745@2|Bacteria,1MWZ5@1224|Proteobacteria,2TV3A@28211|Alphaproteobacteria,2JRV6@204441|Rhodospirillales 204441|Rhodospirillales T COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain kdpE - - ko:K07667 ko02020,ko02024,map02020,map02024 M00454 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C QTD2_k127_637316_3 330214.NIDE1412 4.375e-18 91.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - 1.7.2.1 ko:K00368 ko00910,ko01120,map00910,map01120 M00529 R00783,R00785 RC00086 ko00000,ko00001,ko00002,ko01000 - - - CCP_MauG,Copper-bind,Cu-oxidase_3,Cupredoxin_1 QTD2_k127_637316_2 330214.NIDE0557 7.014e-22 101.0 COG0642@1|root,COG0745@1|root,COG2203@1|root,COG0745@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria 2|Bacteria T PhoQ Sensor - - - - - - - - - - - - GAF,GAF_2,HATPase_c,HisKA QTD2_k127_637316_1 330214.NIDE3217 9.078e-46 173.0 COG1678@1|root,COG1678@2|Bacteria 2|Bacteria K ribonucleoside-diphosphate reductase activity yqgE GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - ko:K07735 - - - - ko00000,ko03000 - - - DUF179 QTD2_k127_6376051_6 1198232.CYCME_1612 3.533e-23 105.0 COG3409@1|root,COG3409@2|Bacteria,1N3E4@1224|Proteobacteria,1RZ2A@1236|Gammaproteobacteria,4624D@72273|Thiotrichales 72273|Thiotrichales M Putative peptidoglycan binding domain - - - - - - - - - - - - PG_binding_1 QTD2_k127_6376051_4 330214.NIDE4145 1.517e-77 265.0 COG1004@1|root,COG1004@2|Bacteria,3J0EJ@40117|Nitrospirae 40117|Nitrospirae C Belongs to the UDP-glucose GDP-mannose dehydrogenase family - - 1.1.1.22 ko:K00012 ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 M00014,M00129,M00361,M00362 R00286 RC00291 ko00000,ko00001,ko00002,ko01000 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N QTD2_k127_6376051_3 330214.NIDE4146 5.126e-124 400.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT_2,HEAT_PBS QTD2_k127_6376051_2 330214.NIDE4147 1.453e-127 412.0 COG1413@1|root,COG1413@2|Bacteria,3J1E2@40117|Nitrospirae 40117|Nitrospirae C Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - HEAT_2,HEAT_PBS QTD2_k127_6376051_0 330214.NIDE4148 5.921e-162 516.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT_2,HEAT_PBS QTD2_k127_6376051_1 330214.NIDE4149 1.006e-135 441.0 COG1413@1|root,COG1413@2|Bacteria,3J1E2@40117|Nitrospirae 40117|Nitrospirae C Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - HEAT_2,HEAT_PBS QTD2_k127_6376051_5 211165.AJLN01000116_gene3124 2.296e-29 124.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - HemolysinCabind,Lactonase QTD2_k127_670540_8 330214.NIDE1837 4.767e-63 221.0 28YNP@1|root,2ZKGB@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_670540_0 330214.NIDE1378 1.337e-316 973.0 COG0459@1|root,COG0459@2|Bacteria,3J0DA@40117|Nitrospirae 40117|Nitrospirae O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groL GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 QTD2_k127_670540_10 330214.NIDE1379 7.146e-50 179.0 COG0234@1|root,COG0234@2|Bacteria,3J0RF@40117|Nitrospirae 40117|Nitrospirae O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter groS GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - ko:K04078 - - - - ko00000,ko03029,ko03110 - - - Cpn10 QTD2_k127_670540_3 330214.NIDE1381 1.553e-157 502.0 COG0568@1|root,COG0568@2|Bacteria 2|Bacteria K sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released rpoH - - ko:K03089 - - - - ko00000,ko03021 - - - Sigma70_r1_2,Sigma70_r2,Sigma70_r4 QTD2_k127_670540_4 330214.NIDE1382 8.289e-129 425.0 COG2223@1|root,COG2223@2|Bacteria,3J0YQ@40117|Nitrospirae 40117|Nitrospirae P Major Facilitator Superfamily - - - ko:K02575 ko00910,map00910 M00615 - - ko00000,ko00001,ko00002,ko02000 2.A.1.8 - - MFS_1 QTD2_k127_670540_2 330214.NIDE1383 1.126e-223 697.0 COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,3J0E0@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ribBA - 3.5.4.25,4.1.99.12 ko:K14652 ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110 M00125,M00840 R00425,R07281 RC00293,RC01792,RC01815,RC02504 ko00000,ko00001,ko00002,ko01000 - - - DHBP_synthase,GTP_cyclohydro2 QTD2_k127_670540_7 330214.NIDE1384 4.481e-67 233.0 COG0054@1|root,COG0054@2|Bacteria,3J0QT@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin ribH GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 ko:K00794 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R04457 RC00960 ko00000,ko00001,ko00002,ko01000 - - - DMRL_synthase QTD2_k127_670540_9 330214.NIDE1385 5.708e-56 204.0 COG0781@1|root,COG0781@2|Bacteria,3J0RV@40117|Nitrospirae 40117|Nitrospirae K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons nusB - - ko:K03625 - - - - ko00000,ko03009,ko03021 - - - NusB QTD2_k127_670540_1 330214.NIDE1386 7.302e-234 729.0 COG0015@1|root,COG0015@2|Bacteria,3J0EM@40117|Nitrospirae 40117|Nitrospirae F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily purB - 4.3.2.2 ko:K01756 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048,M00049 R01083,R04559 RC00379,RC00444,RC00445 ko00000,ko00001,ko00002,ko01000 - - - ADSL_C,Lyase_1 QTD2_k127_670540_6 330214.NIDE1387 1.31e-87 299.0 COG3253@1|root,COG3253@2|Bacteria 2|Bacteria S peroxidase activity - GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016701,GO:0016702,GO:0042597,GO:0044464,GO:0050587,GO:0051213,GO:0055114 1.13.11.49 ko:K09162 - - - - ko00000,ko01000 - - - Chlor_dismutase QTD2_k127_670540_5 330214.NIDE1388 1.996e-98 324.0 COG0152@1|root,COG0152@2|Bacteria,3J0U6@40117|Nitrospirae 40117|Nitrospirae F SAICAR synthetase purC GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 ko:K01923 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04591 RC00064,RC00162 ko00000,ko00001,ko00002,ko01000 - - - SAICAR_synt QTD2_k127_702434_10 330214.NIDE0758 9.627e-167 527.0 COG0472@1|root,COG0472@2|Bacteria,3J0C4@40117|Nitrospirae 40117|Nitrospirae M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan mraY - 2.7.8.13 ko:K01000 ko00550,ko01100,ko01502,map00550,map01100,map01502 - R05629,R05630 RC00002,RC02753 ko00000,ko00001,ko01000,ko01011 9.B.146 - - Glycos_transf_4,MraY_sig1 QTD2_k127_702434_5 330214.NIDE0757 3.911e-195 624.0 COG0770@1|root,COG0770@2|Bacteria,3J0PW@40117|Nitrospirae 40117|Nitrospirae M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein murF - 6.3.2.10 ko:K01929 ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502 - R04573,R04617 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M QTD2_k127_702434_4 330214.NIDE0756 2.35e-220 694.0 COG0769@1|root,COG0769@2|Bacteria,3J0DS@40117|Nitrospirae 40117|Nitrospirae M acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan murE - 6.3.2.13 ko:K01928 ko00300,ko00550,map00300,map00550 - R02788 RC00064,RC00090 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M QTD2_k127_702434_2 330214.NIDE0755 2.29e-270 841.0 COG0768@1|root,COG0768@2|Bacteria,3J0FH@40117|Nitrospirae 40117|Nitrospirae M Penicillin-binding Protein dimerisation domain - - 3.4.16.4 ko:K03587 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011,ko03036 - - - PBP_dimer,Transpeptidase QTD2_k127_702434_25 330214.NIDE0754 5.433e-28 117.0 2DT1T@1|root,33IAD@2|Bacteria 2|Bacteria S Evidence 5 No homology to any previously reported sequences - - - - - - - - - - - - FtsL QTD2_k127_702434_14 330214.NIDE0753 2.988e-109 362.0 COG0275@1|root,COG0275@2|Bacteria,3J0NU@40117|Nitrospirae 40117|Nitrospirae J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA mraW GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 ko:K03438 - - - - ko00000,ko01000,ko03009 - - - Methyltransf_5 QTD2_k127_702434_3 330214.NIDE0751 4.571e-238 740.0 COG0017@1|root,COG0017@2|Bacteria 2|Bacteria J Asparaginyl-tRNA synthetase asnS GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 ko:K01893 ko00970,map00970 M00359,M00360 R03648 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon QTD2_k127_702434_11 330214.NIDE0749 1.54e-164 525.0 COG4447@1|root,COG4447@2|Bacteria 2|Bacteria S cellulose binding hcf136 - - - - - - - - - - - BNR,Sortilin-Vps10 QTD2_k127_702434_19 330214.NIDE0748 7.037e-79 265.0 COG1666@1|root,COG1666@2|Bacteria,3J135@40117|Nitrospirae 40117|Nitrospirae S Protein of unknown function (DUF520) - - - ko:K09767 - - - - ko00000 - - - DUF520 QTD2_k127_702434_1 330214.NIDE0747 0.0 1129.0 COG1966@1|root,COG1966@2|Bacteria,3J10E@40117|Nitrospirae 40117|Nitrospirae T 5TM C-terminal transporter carbon starvation CstA - - - ko:K06200 - - - - ko00000 - - - CstA,CstA_5TM QTD2_k127_702434_24 118173.KB235914_gene1294 7.806e-39 152.0 COG0500@1|root,COG2226@2|Bacteria,1G79M@1117|Cyanobacteria,1HGJ0@1150|Oscillatoriales 1117|Cyanobacteria Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11,Methyltransf_25 QTD2_k127_702434_12 330214.NIDE0737 1.163e-136 442.0 COG0392@1|root,COG0392@2|Bacteria 2|Bacteria M lysyltransferase activity - - - ko:K07027 - - - - ko00000,ko02000 4.D.2 - - LPG_synthase_TM QTD2_k127_702434_9 330214.NIDE0736 2.327e-174 558.0 COG0558@1|root,COG1208@1|root,COG0558@2|Bacteria,COG1208@2|Bacteria 2|Bacteria JM COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon - - 2.7.7.99 ko:K00992 ko00520,ko01100,map00520,map01100 - R11025 RC00002 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf QTD2_k127_702434_13 330214.NIDE0735 3.675e-115 377.0 COG1213@1|root,COG1213@2|Bacteria,3J1BZ@40117|Nitrospirae 40117|Nitrospirae M Nucleotidyl transferase - - - - - - - - - - - - - QTD2_k127_702434_7 330214.NIDE0734 1.142e-184 584.0 COG0075@1|root,COG0075@2|Bacteria,3J0FC@40117|Nitrospirae 2|Bacteria E Evidence 2b Function of strongly homologous gene phnW GO:0003674,GO:0003824 2.5.1.49,2.6.1.37,3.11.1.1 ko:K01740,ko:K03430,ko:K05306,ko:K09469 ko00270,ko00440,ko01100,ko01120,map00270,map00440,map01100,map01120 - R00747,R01287,R04152,R04859 RC00008,RC00020,RC00062,RC00368,RC02821,RC02848 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_5 QTD2_k127_702434_15 330214.NIDE0733 4.913e-104 345.0 COG0028@1|root,COG0028@2|Bacteria 2|Bacteria EH Belongs to the TPP enzyme family - - 4.1.1.82 ko:K09459 ko00440,ko01100,ko01120,ko01130,map00440,map01100,map01120,map01130 - R04053 RC00506 ko00000,ko00001,ko01000 - - - TPP_enzyme_C,TPP_enzyme_N QTD2_k127_702434_18 330214.NIDE0732 3.573e-83 279.0 COG4032@1|root,COG4032@2|Bacteria 2|Bacteria EH Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ppd - 4.1.1.82 ko:K09459 ko00440,ko01100,ko01120,ko01130,map00440,map01100,map01120,map01130 - R04053 RC00506 ko00000,ko00001,ko01000 - - - TPP_enzyme_C,TPP_enzyme_N QTD2_k127_702434_8 1254432.SCE1572_42550 3.223e-183 588.0 COG1213@1|root,COG2513@1|root,COG1213@2|Bacteria,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,42PWB@68525|delta/epsilon subdivisions,2X5K5@28221|Deltaproteobacteria 28221|Deltaproteobacteria C TIGRFAM phosphoenolpyruvate phosphomutase - - 5.4.2.9 ko:K01841 ko00440,ko01100,ko01120,ko01130,map00440,map01100,map01120,map01130 - R00661 RC02792 ko00000,ko00001,ko01000 - - - CTP_transf_like,NTP_transf_3,PEP_mutase QTD2_k127_702434_16 330214.NIDE0728 2.463e-95 316.0 COG1309@1|root,COG1309@2|Bacteria,3J1CN@40117|Nitrospirae 40117|Nitrospirae K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N QTD2_k127_702434_6 330214.NIDE0727 4.871e-192 610.0 COG0845@1|root,COG0845@2|Bacteria,3J15F@40117|Nitrospirae 40117|Nitrospirae M HlyD family secretion protein - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - HlyD_D23 QTD2_k127_702434_0 330214.NIDE0726 0.0 1768.0 COG0841@1|root,COG0841@2|Bacteria,3J0ZG@40117|Nitrospirae 40117|Nitrospirae V AcrB/AcrD/AcrF family - - - - - - - - - - - - ACR_tran QTD2_k127_702434_23 330214.NIDE0725 2.736e-43 161.0 COG3255@1|root,COG3255@2|Bacteria 2|Bacteria I Sterol carrier protein - - - - - - - - - - - - SCP2 QTD2_k127_702434_20 330214.NIDE0724 5.376e-57 202.0 COG1586@1|root,COG1586@2|Bacteria 2|Bacteria E Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine speD - 2.5.1.16,4.1.1.50 ko:K00797,ko:K01611 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R00178,R01920,R02869,R08359 RC00021,RC00053,RC00299 ko00000,ko00001,ko00002,ko01000 - - - AdoMet_dc,Spermine_synth QTD2_k127_702434_17 330214.NIDE0722 1.947e-91 307.0 COG1018@1|root,COG1018@2|Bacteria 330214.NIDE0722|- C nitric oxide dioxygenase activity - - 1.17.1.1 ko:K00523 ko00520,map00520 - R03391,R03392 RC00230 ko00000,ko00001,ko01000 - - - - QTD2_k127_702434_26 330214.NIDE0505 3.926e-23 98.0 COG4446@1|root,COG4446@2|Bacteria 2|Bacteria P Protein conserved in bacteria - - - - - - - - - - - - DUF1499 QTD2_k127_808737_6 1278073.MYSTI_05954 1.136e-18 88.0 COG2963@1|root,COG2963@2|Bacteria,1MZ5C@1224|Proteobacteria,42WWI@68525|delta/epsilon subdivisions,2WSR8@28221|Deltaproteobacteria 28221|Deltaproteobacteria L PFAM transposase IS3 IS911 family protein - - - ko:K07483 - - - - ko00000 - - - HTH_Tnp_1 QTD2_k127_808737_4 378806.STAUR_7364 6.368e-92 312.0 COG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,42M98@68525|delta/epsilon subdivisions,2WMKB@28221|Deltaproteobacteria,2YXV7@29|Myxococcales 28221|Deltaproteobacteria L HTH-like domain - - - ko:K07497 - - - - ko00000 - - - HTH_21,HTH_Tnp_1,rve,rve_3 QTD2_k127_808737_3 330214.NIDE1834 5.816e-115 378.0 COG3547@1|root,COG3547@2|Bacteria,3J17W@40117|Nitrospirae 40117|Nitrospirae L hmm pf02371 - - - ko:K07486 - - - - ko00000 - - - DEDD_Tnp_IS110,Transposase_20 QTD2_k127_808737_0 330214.NIDE3266 0.0 1146.0 COG3808@1|root,COG3808@2|Bacteria 2|Bacteria C hydrogen-translocating pyrophosphatase activity hppA - 3.6.1.1 ko:K15987 ko00190,map00190 - - - ko00000,ko00001,ko01000 3.A.10.1 - - H_PPase QTD2_k127_808737_2 330214.NIDE3264 2.589e-239 752.0 COG0608@1|root,COG0608@2|Bacteria,3J0PF@40117|Nitrospirae 40117|Nitrospirae L DHH family recJ - - ko:K07462 ko03410,ko03430,ko03440,map03410,map03430,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DHH,DHHA1 QTD2_k127_808737_1 330214.NIDE3263 8.726e-309 951.0 COG0317@1|root,COG0317@2|Bacteria,3J0CX@40117|Nitrospirae 40117|Nitrospirae KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance - - 2.7.6.5 ko:K00951 ko00230,map00230 - R00429 RC00002,RC00078 ko00000,ko00001,ko01000 - - - ACT_4,HD_4,RelA_SpoT,TGS QTD2_k127_835705_26 1230476.C207_04683 2.613e-15 80.0 COG1555@1|root,COG1555@2|Bacteria,1N7MI@1224|Proteobacteria,2U8WE@28211|Alphaproteobacteria,3JYXP@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria L Helix-hairpin-helix motif - - - - - - - - - - - - HHH_3 QTD2_k127_835705_29 330214.NIDE3405 4.315e-12 72.0 COG3212@1|root,COG3212@2|Bacteria 2|Bacteria T peptidase Z012_07375 - - - - - - - - - - - PepSY QTD2_k127_835705_23 1121413.JMKT01000017_gene433 2.51e-20 105.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,42M2X@68525|delta/epsilon subdivisions,2WJMY@28221|Deltaproteobacteria,2M8ZP@213115|Desulfovibrionales 28221|Deltaproteobacteria T response regulator, receiver - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_835705_11 330214.NIDE2629 4.739e-69 253.0 COG0642@1|root,COG2205@2|Bacteria 330214.NIDE2629|- T PhoQ Sensor - - - - - - - - - - - - - QTD2_k127_835705_14 204669.Acid345_0700 1.412e-52 195.0 2EFRH@1|root,339HI@2|Bacteria,3Y7RW@57723|Acidobacteria,2JN1K@204432|Acidobacteriia 204432|Acidobacteriia - - - - - - - - - - - - - - - QTD2_k127_835705_8 330214.NIDE3616 4.544e-112 367.0 COG0388@1|root,COG0388@2|Bacteria 2|Bacteria S hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - 3.5.1.53 ko:K11206,ko:K12251 ko00330,ko01100,map00330,map01100 - R01152 RC00096 ko00000,ko00001,ko01000 - - - CN_hydrolase QTD2_k127_835705_31 1278307.KB906967_gene2564 1.891e-06 55.0 COG2356@1|root,COG2374@1|root,COG3291@1|root,COG4733@1|root,COG2356@2|Bacteria,COG2374@2|Bacteria,COG3291@2|Bacteria,COG4733@2|Bacteria,1R4W1@1224|Proteobacteria,1RPZG@1236|Gammaproteobacteria,2QJ69@267894|Psychromonadaceae 1236|Gammaproteobacteria L Endonuclease I - - - - - - - - - - - - Endonuclease_1 QTD2_k127_835705_7 330214.NIDE3623 2.086e-133 430.0 COG0656@1|root,COG0656@2|Bacteria 2|Bacteria S aldo-keto reductase (NADP) activity ytbE - - - - - - - - - - - Aldo_ket_red,DUF4157 QTD2_k127_835705_15 316067.Geob_1156 1.634e-52 188.0 COG2259@1|root,COG2259@2|Bacteria,1N072@1224|Proteobacteria,437CT@68525|delta/epsilon subdivisions,2XA0U@28221|Deltaproteobacteria,43VKC@69541|Desulfuromonadales 28221|Deltaproteobacteria S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX QTD2_k127_835705_6 330214.NIDE2583 9.509e-169 535.0 COG0825@1|root,COG0825@2|Bacteria,3J0CN@40117|Nitrospirae 40117|Nitrospirae I Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA accA - 2.1.3.15,6.4.1.2 ko:K01962 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - ACCA QTD2_k127_835705_0 644282.Deba_2373 0.0 1152.0 COG0587@1|root,COG0587@2|Bacteria,1MUIF@1224|Proteobacteria,42MGP@68525|delta/epsilon subdivisions,2WIZ2@28221|Deltaproteobacteria 28221|Deltaproteobacteria L DNA polymerase III alpha subunit dnaE - 2.7.7.7 ko:K02337 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon QTD2_k127_835705_17 330214.NIDE2576 2.326e-47 186.0 COG1196@1|root,COG3743@1|root,COG1196@2|Bacteria,COG3743@2|Bacteria 2|Bacteria S rRNA binding - - - ko:K00185,ko:K02967 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 5.A.3 - - NrfD QTD2_k127_835705_12 330214.NIDE2575 2.83e-63 228.0 COG2885@1|root,COG2885@2|Bacteria 2|Bacteria M chlorophyll binding - - - ko:K02051,ko:K03286 - M00188 - - ko00000,ko00002,ko02000 1.B.6,3.A.1.16,3.A.1.17 - - NMT1,NMT1_2,OmpA QTD2_k127_835705_1 330214.NIDE2574 1.546e-284 883.0 COG0138@1|root,COG0138@2|Bacteria,3J0CV@40117|Nitrospirae 40117|Nitrospirae F AICARFT/IMPCHase bienzyme purH - 2.1.2.3,3.5.4.10 ko:K00602 ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523 M00048 R01127,R04560 RC00026,RC00263,RC00456 ko00000,ko00001,ko00002,ko01000,ko04147 - - - AICARFT_IMPCHas,MGS QTD2_k127_835705_5 330214.NIDE2573 1.715e-195 617.0 COG0151@1|root,COG0151@2|Bacteria,3J0H5@40117|Nitrospirae 40117|Nitrospirae F Phosphoribosylglycinamide synthetase, C domain purD - 6.3.4.13 ko:K01945 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04144 RC00090,RC00166 ko00000,ko00001,ko00002,ko01000 - - - GARS_A,GARS_C,GARS_N QTD2_k127_835705_13 330214.NIDE2572 1.104e-52 194.0 COG0009@1|root,COG0009@2|Bacteria,3J0TD@40117|Nitrospirae 40117|Nitrospirae J Telomere recombination - - 2.7.7.87 ko:K07566 - - R10463 RC00745 ko00000,ko01000,ko03009,ko03016 - - - Sua5_yciO_yrdC QTD2_k127_835705_21 330214.NIDE2568 1.121e-28 119.0 COG2331@1|root,COG2331@2|Bacteria,3J0V8@40117|Nitrospirae 40117|Nitrospirae S Putative regulatory protein - - - - - - - - - - - - Zn-ribbon_8 QTD2_k127_835705_4 330214.NIDE2567 4.712e-197 621.0 COG0436@1|root,COG0436@2|Bacteria,3J0EV@40117|Nitrospirae 40117|Nitrospirae E Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - 2.6.1.1 ko:K00812 ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00355,R00694,R00734,R00896,R02433,R02619,R05052 RC00006 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 QTD2_k127_835705_10 330214.NIDE2566 6.192e-81 271.0 COG0669@1|root,COG0669@2|Bacteria,3J0MF@40117|Nitrospirae 40117|Nitrospirae F Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate coaD - 2.7.7.3 ko:K00954 ko00770,ko01100,map00770,map01100 M00120 R03035 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_like QTD2_k127_835705_16 330214.NIDE2565 3.78e-52 190.0 COG0742@1|root,COG0742@2|Bacteria,3J0V5@40117|Nitrospirae 40117|Nitrospirae L Conserved hypothetical protein 95 - - - - - - - - - - - - Cons_hypoth95 QTD2_k127_835705_22 330214.NIDE2564 1.251e-28 117.0 2EI4B@1|root,33BVP@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_835705_9 330214.NIDE2563 2.887e-105 347.0 COG2003@1|root,COG2003@2|Bacteria,3J0HV@40117|Nitrospirae 40117|Nitrospirae E RadC-like JAB domain - - - ko:K03630 - - - - ko00000 - - - RadC QTD2_k127_835705_3 1123376.AUIU01000016_gene292 1.275e-203 656.0 COG0480@1|root,COG0480@2|Bacteria,3J0WU@40117|Nitrospirae 40117|Nitrospirae J Elongation factor G, domain IV - - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 QTD2_k127_835705_2 330214.NIDE2561 8.227e-215 675.0 COG0265@1|root,COG0265@2|Bacteria 2|Bacteria O serine-type endopeptidase activity - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 QTD2_k127_835705_18 330214.NIDE2560 1.886e-46 175.0 COG0569@1|root,COG0569@2|Bacteria 2|Bacteria P domain protein - - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Ion_trans,Ion_trans_2,TrkA_C QTD2_k127_844146_11 330214.NIDE3719 4.334e-82 279.0 COG1189@1|root,COG1189@2|Bacteria,3J0MD@40117|Nitrospirae 40117|Nitrospirae J FtsJ-like methyltransferase - - 2.1.1.226,2.1.1.227 ko:K06442 - - - - ko00000,ko01000,ko03009 - - - FtsJ,S4 QTD2_k127_844146_16 330214.NIDE3720 1.265e-29 119.0 COG1722@1|root,COG1722@2|Bacteria 2|Bacteria L exodeoxyribonuclease VII activity xseB - 3.1.11.6 ko:K03602 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_S QTD2_k127_844146_4 330214.NIDE3721 2.262e-148 483.0 COG1570@1|root,COG1570@2|Bacteria,3J0S9@40117|Nitrospirae 40117|Nitrospirae L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseA - 3.1.11.6 ko:K03601 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_L,tRNA_anti_2 QTD2_k127_844146_6 330214.NIDE3722 1.32e-138 444.0 COG1692@1|root,COG1692@2|Bacteria,3J0JW@40117|Nitrospirae 40117|Nitrospirae S YmdB-like protein - - - ko:K09769 - - - - ko00000 - - - YmdB QTD2_k127_844146_0 330214.NIDE3723 1.611e-260 811.0 COG1418@1|root,COG4372@1|root,COG1418@2|Bacteria,COG4372@2|Bacteria,3J0C8@40117|Nitrospirae 40117|Nitrospirae S Endoribonuclease that initiates mRNA decay rny - - ko:K18682 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - DUF3552,HD,KH_1 QTD2_k127_844146_15 330214.NIDE3725 2.161e-30 124.0 COG3027@1|root,COG3027@2|Bacteria 2|Bacteria D Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division zapA - - ko:K09888 - - - - ko00000,ko03036 - - - ZapA QTD2_k127_844146_1 330214.NIDE3727 6.633e-256 809.0 COG0457@1|root,COG0741@1|root,COG1729@1|root,COG0457@2|Bacteria,COG0741@2|Bacteria,COG1729@2|Bacteria,3J0VD@40117|Nitrospirae 40117|Nitrospirae M Transglycosylase SLT domain - - - ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 - SLT,TPR_3,TPR_6 QTD2_k127_844146_5 330214.NIDE3728 2.969e-143 462.0 COG0820@1|root,COG0820@2|Bacteria,3J0CH@40117|Nitrospirae 40117|Nitrospirae J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs rlmN - 2.1.1.192 ko:K06941 - - - - ko00000,ko01000,ko03009 - - - Fer4_14,Radical_SAM QTD2_k127_844146_2 330214.NIDE3729 9.23e-226 707.0 COG0612@1|root,COG0612@2|Bacteria,3J0BY@40117|Nitrospirae 40117|Nitrospirae S Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C QTD2_k127_844146_3 330214.NIDE3730 2.457e-212 668.0 COG0612@1|root,COG0612@2|Bacteria,3J0I5@40117|Nitrospirae 40117|Nitrospirae S Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07263 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M16,Peptidase_M16_C QTD2_k127_844146_10 330214.NIDE3731 3.212e-106 353.0 COG1606@1|root,COG1606@2|Bacteria 2|Bacteria L tRNA processing larE - 4.99.1.12 ko:K06864,ko:K09121 - - - - ko00000,ko01000 - - - ATP_bind_3,Asn_synthase,NAD_synthase,QueC QTD2_k127_844146_12 330214.NIDE3732 9.499e-74 251.0 COG0711@1|root,COG0711@2|Bacteria,3J1AE@40117|Nitrospirae 40117|Nitrospirae C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) atpF - - ko:K02109 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_B QTD2_k127_844146_13 330214.NIDE3733 2.22e-37 141.0 COG0636@1|root,COG0636@2|Bacteria,3J198@40117|Nitrospirae 40117|Nitrospirae C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpE - - ko:K02110 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_C QTD2_k127_844146_8 330214.NIDE3734 1.164e-122 397.0 COG0356@1|root,COG0356@2|Bacteria,3J0RW@40117|Nitrospirae 40117|Nitrospirae C it plays a direct role in the translocation of protons across the membrane atpB - - ko:K02108 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko03110 3.A.2.1 - - ATP-synt_A QTD2_k127_844146_14 330214.NIDE3735 2.139e-32 127.0 COG5336@1|root,COG5336@2|Bacteria 2|Bacteria C function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex atpI - - ko:K02116 - - - - ko00000,ko00194 3.A.2.1 - - ATPase_gene1 QTD2_k127_844146_9 1340434.AXVA01000011_gene3279 5.574e-115 388.0 COG0147@1|root,COG0147@2|Bacteria,1TQAP@1239|Firmicutes,4HB31@91061|Bacilli,1ZARE@1386|Bacillus 91061|Bacilli EH Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia pabB GO:0000162,GO:0000287,GO:0003674,GO:0003824,GO:0004049,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009108,GO:0009308,GO:0009309,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042398,GO:0042401,GO:0042430,GO:0042435,GO:0042558,GO:0042559,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046820,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.6.1.85 ko:K01665 ko00790,map00790 - R01716 RC00010,RC01418 ko00000,ko00001,ko01000 - - - Anth_synt_I_N,Chorismate_bind QTD2_k127_844146_7 330214.NIDE3737 2.163e-136 441.0 COG0115@1|root,COG0115@2|Bacteria,3J0BM@40117|Nitrospirae 2|Bacteria E Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family pabC - 2.6.1.42,4.1.3.38 ko:K00826,ko:K02619 ko00270,ko00280,ko00290,ko00770,ko00790,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map00790,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R05553,R10991 RC00006,RC00036,RC01843,RC02148 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 QTD2_k127_855565_3 330214.NIDE2927 1.308e-15 76.0 COG0073@1|root,COG0143@1|root,COG0073@2|Bacteria,COG0143@2|Bacteria,3J0AI@40117|Nitrospirae 40117|Nitrospirae J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation metG - 6.1.1.10 ko:K01874 ko00450,ko00970,map00450,map00970 M00359,M00360 R03659,R04773 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1g,tRNA_bind QTD2_k127_855565_1 330214.NIDE2928 4.244e-123 401.0 2CHNQ@1|root,2Z7KM@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_855565_2 1156937.MFUM_1010089 6.572e-44 169.0 COG4798@1|root,COG4798@2|Bacteria,46T4I@74201|Verrucomicrobia,37GDY@326457|unclassified Verrucomicrobia 74201|Verrucomicrobia S Met-10+ like-protein - - - - - - - - - - - - Methyltransf_31 QTD2_k127_855565_0 330214.NIDE2930 1.058e-149 479.0 COG1230@1|root,COG1230@2|Bacteria,3J11Z@40117|Nitrospirae 40117|Nitrospirae P Cation efflux family - - - ko:K16264 - - - - ko00000,ko02000 2.A.4.1 - - Cation_efflux QTD2_k127_857029_10 395961.Cyan7425_3780 1.736e-05 49.0 COG0037@1|root,COG0037@2|Bacteria,1G11T@1117|Cyanobacteria,3KGE7@43988|Cyanothece 1117|Cyanobacteria D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine tilS - 6.3.4.19 ko:K04075 - - R09597 RC02633,RC02634 ko00000,ko01000,ko03016 - - - ATP_bind_3,TilS QTD2_k127_857029_5 330214.NIDE2740 5.092e-113 381.0 COG0196@1|root,COG0196@2|Bacteria,3J0KY@40117|Nitrospirae 40117|Nitrospirae H Riboflavin kinase ribF - 2.7.1.26,2.7.7.2 ko:K11753 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00161,R00549 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - FAD_syn,Flavokinase QTD2_k127_857029_2 330214.NIDE2741 2.143e-169 536.0 COG0113@1|root,COG0113@2|Bacteria,3J0DV@40117|Nitrospirae 40117|Nitrospirae H Delta-aminolevulinic acid dehydratase hemB - 4.2.1.24 ko:K01698 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00036 RC00918,RC01781 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ALAD QTD2_k127_857029_7 330214.NIDE2742 4.506e-62 216.0 COG2905@1|root,COG2905@2|Bacteria 2|Bacteria T signal-transduction protein containing cAMP-binding and CBS domains opuCA - 2.7.7.7 ko:K02342,ko:K05847,ko:K07182 ko00230,ko00240,ko01100,ko02010,ko03030,ko03430,ko03440,map00230,map00240,map01100,map02010,map03030,map03430,map03440 M00209,M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko02000,ko03032,ko03400 3.A.1.12 - - CBS,DUF294,DUF294_C,cNMP_binding QTD2_k127_857029_1 330214.NIDE2743 5.256e-209 662.0 COG0007@1|root,COG1587@1|root,COG0007@2|Bacteria,COG1587@2|Bacteria,3J0B6@40117|Nitrospirae 40117|Nitrospirae H Belongs to the precorrin methyltransferase family - - 2.1.1.107,4.2.1.75 ko:K13542 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03165,R03194 RC00003,RC00871,RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4,TP_methylase QTD2_k127_857029_3 330214.NIDE2744 6.378e-138 444.0 COG0181@1|root,COG0181@2|Bacteria,3J0GC@40117|Nitrospirae 40117|Nitrospirae H Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps hemC - 2.5.1.61 ko:K01749 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00084 RC02317 ko00000,ko00001,ko00002,ko01000 - - - Porphobil_deam,Porphobil_deamC QTD2_k127_857029_0 330214.NIDE2745 2.427e-210 662.0 COG0373@1|root,COG0373@2|Bacteria,3J0BD@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) hemA - 1.2.1.70 ko:K02492 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R04109 RC00055,RC00149 ko00000,ko00001,ko00002,ko01000 - - - GlutR_N,GlutR_dimer,Shikimate_DH QTD2_k127_857029_4 330214.NIDE2746 4.959e-129 416.0 COG0755@1|root,COG0755@2|Bacteria,3J14H@40117|Nitrospirae 40117|Nitrospirae O Cytochrome C assembly protein - - - - - - - - - - - - Cytochrom_C_asm QTD2_k127_857029_8 330214.NIDE2747 1.142e-56 207.0 COG0313@1|root,COG0313@2|Bacteria,3J0PU@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA rsmI - 2.1.1.198 ko:K07056 - - - - ko00000,ko01000,ko03009 - - - TP_methylase QTD2_k127_857029_9 330214.NIDE2748 2.272e-25 108.0 COG0425@1|root,COG0425@2|Bacteria,3J1DD@40117|Nitrospirae 40117|Nitrospirae O Sulfurtransferase TusA - - - - - - - - - - - - TusA QTD2_k127_859979_1 330214.NIDE3244 4.636e-200 634.0 COG4191@1|root,COG5278@1|root,COG4191@2|Bacteria,COG5278@2|Bacteria 2|Bacteria T phosphoserine phosphatase activity fleS - 2.7.13.3 ko:K02668,ko:K07710,ko:K07711,ko:K10942 ko02020,ko02024,ko05111,map02020,map02024,map05111 M00500,M00501,M00502,M00515 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - CHASE3,GAF,HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9,Response_reg QTD2_k127_859979_0 330214.NIDE3245 2.993e-230 719.0 COG2204@1|root,COG2204@2|Bacteria 2|Bacteria T phosphorelay signal transduction system - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat QTD2_k127_859979_2 330214.NIDE0155 2.756e-70 241.0 COG0517@1|root,COG0517@2|Bacteria 2|Bacteria S IMP dehydrogenase activity - - - ko:K07182 - - - - ko00000 - - - CBS QTD2_k127_859979_4 882.DVU_2614 1.101e-19 97.0 COG3063@1|root,COG3063@2|Bacteria,1N4PR@1224|Proteobacteria,42TXM@68525|delta/epsilon subdivisions,2WR1F@28221|Deltaproteobacteria,2MCE9@213115|Desulfovibrionales 28221|Deltaproteobacteria NU Type IV pilus biogenesis stability protein PilW - - - - - - - - - - - - TPR_16,TPR_2,TPR_8 QTD2_k127_859979_3 1439940.BAY1663_00138 1.941e-26 117.0 COG3271@1|root,COG3271@2|Bacteria,1RA3D@1224|Proteobacteria,1S2EC@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU COG0457 FOG TPR repeat - - - - - - - - - - - - Peptidase_C39_2,TPR_16 QTD2_k127_864439_5 330214.NIDE2497 1.906e-20 91.0 COG0652@1|root,COG0652@2|Bacteria,3J18H@40117|Nitrospirae 40117|Nitrospirae O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - 5.2.1.8 ko:K03767,ko:K03768 ko01503,ko04217,map01503,map04217 - - - ko00000,ko00001,ko01000,ko03110,ko04147 - - - Pro_isomerase QTD2_k127_864439_0 330214.NIDE2493 7.73e-194 613.0 COG1355@1|root,COG1355@2|Bacteria,3J0U4@40117|Nitrospirae 40117|Nitrospirae S Memo-like protein - - - ko:K06990 - - - - ko00000,ko04812 - - - Memo QTD2_k127_864439_3 330214.NIDE2492 8.248e-126 406.0 2ANS9@1|root,31DS7@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_864439_2 330214.NIDE2491 4.422e-154 490.0 28MYQ@1|root,2ZB5K@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_864439_4 330214.NIDE2490 4.565e-116 376.0 29ZH8@1|root,30MGZ@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_864439_1 330214.NIDE2489 5.289e-159 507.0 28MEN@1|root,2ZASA@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_864681_1 330214.NIDE3934 7.476e-107 349.0 COG1262@1|root,COG1262@2|Bacteria 2|Bacteria T PFAM Formylglycine-generating sulfatase enzyme - - - - - - - - - - - - FGE-sulfatase QTD2_k127_864681_0 330214.NIDE3935 1.308e-139 451.0 COG1262@1|root,COG1262@2|Bacteria,3J14J@40117|Nitrospirae 2|Bacteria S Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - FGE-sulfatase QTD2_k127_864681_2 330214.NIDE3936 1.468e-101 331.0 COG3794@1|root,COG3794@2|Bacteria 2|Bacteria C PFAM blue (type 1) copper domain protein - - - - - - - - - - - - CarboxypepD_reg,fn3_3 QTD2_k127_868674_4 1121448.DGI_0140 1.7e-37 145.0 COG0500@1|root,COG2226@2|Bacteria,1QYS8@1224|Proteobacteria,43DF8@68525|delta/epsilon subdivisions,2X8M7@28221|Deltaproteobacteria,2ME6A@213115|Desulfovibrionales 28221|Deltaproteobacteria Q Methyltransferase domain - - - - - - - - - - - - - QTD2_k127_868674_1 927677.ALVU02000001_gene1859 1.081e-75 268.0 COG0438@1|root,COG0438@2|Bacteria,1G2K5@1117|Cyanobacteria 1117|Cyanobacteria M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 QTD2_k127_868674_0 1245469.S58_08570 2.25e-89 305.0 COG0451@1|root,COG0451@2|Bacteria,1QRS2@1224|Proteobacteria,2U2FA@28211|Alphaproteobacteria,3JX18@41294|Bradyrhizobiaceae 28211|Alphaproteobacteria GM RmlD substrate binding domain - - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase QTD2_k127_868674_3 1089551.KE386572_gene1274 7.117e-60 214.0 COG0110@1|root,COG0110@2|Bacteria,1N6SQ@1224|Proteobacteria,2V8DT@28211|Alphaproteobacteria,4BT1R@82117|unclassified Alphaproteobacteria 28211|Alphaproteobacteria S Hexapeptide repeat of succinyl-transferase - - - - - - - - - - - - Hexapep,Hexapep_2 QTD2_k127_868674_5 65093.PCC7418_2775 2.065e-36 152.0 COG1216@1|root,COG1216@2|Bacteria 2|Bacteria V Glycosyl transferase, family 2 - - - - - - - - - - - - Glycos_transf_2 QTD2_k127_868674_6 1123072.AUDH01000013_gene1470 7.066e-05 54.0 COG2227@1|root,COG2227@2|Bacteria,1MU89@1224|Proteobacteria,2TRIK@28211|Alphaproteobacteria 28211|Alphaproteobacteria H O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway ubiG - 2.1.1.222,2.1.1.64 ko:K00568 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04988,R05614,R08769,R08781 RC00003,RC00392,RC01895 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_11,Methyltransf_23 QTD2_k127_868674_2 347834.RHE_CH00758 6.399e-64 228.0 COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,2TSCY@28211|Alphaproteobacteria,4B83H@82115|Rhizobiaceae 28211|Alphaproteobacteria E asparagine asnB - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 QTD2_k127_8688_2 330214.NIDE1465 1.872e-181 569.0 COG1013@1|root,COG1013@2|Bacteria,3J10F@40117|Nitrospirae 40117|Nitrospirae C Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - 1.2.7.1 ko:K00170 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C QTD2_k127_8688_1 330214.NIDE0970 5.215e-184 576.0 COG1013@1|root,COG1013@2|Bacteria,3J0Z2@40117|Nitrospirae 40117|Nitrospirae C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - 1.2.7.1 ko:K00170 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C QTD2_k127_8688_0 330214.NIDE0971 1.598e-216 674.0 COG0674@1|root,COG0674@2|Bacteria,3J0WN@40117|Nitrospirae 40117|Nitrospirae C Pyruvate:ferredoxin oxidoreductase core domain II - - 1.2.7.1 ko:K00169 ko00010,ko00020,ko00620,ko00633,ko00640,ko00650,ko00680,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00633,map00640,map00650,map00680,map00720,map01100,map01120,map01130,map01200 M00173,M00307,M00374,M00620 R01196,R01199,R08034 RC00004,RC00250,RC02742,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - PFOR_II,POR_N QTD2_k127_883951_2 330214.NIDE0613 0.0 999.0 COG0649@1|root,COG0852@1|root,COG0649@2|Bacteria,COG0852@2|Bacteria,3J0FM@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoD - 1.6.5.3 ko:K00333,ko:K13378 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_49kDa,NiFeSe_Hases QTD2_k127_883951_8 330214.NIDE0614 2.259e-94 310.0 COG0377@1|root,COG0377@2|Bacteria,3J11S@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q6 QTD2_k127_883951_12 330214.NIDE0615 2.439e-63 218.0 COG0838@1|root,COG0838@2|Bacteria,3J0MS@40117|Nitrospirae 40117|Nitrospirae C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - 1.6.5.3 ko:K00330 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q4 QTD2_k127_883951_5 330214.NIDE0616 1.308e-171 548.0 COG1565@1|root,COG1565@2|Bacteria,3J0P0@40117|Nitrospirae 40117|Nitrospirae S Putative S-adenosyl-L-methionine-dependent methyltransferase - - - - - - - - - - - - Methyltransf_28 QTD2_k127_883951_0 330214.NIDE0623 0.0 1566.0 COG0653@1|root,COG0653@2|Bacteria,3J0E5@40117|Nitrospirae 40117|Nitrospirae U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW QTD2_k127_883951_7 330214.NIDE0631 7.227e-100 337.0 COG4313@1|root,COG4313@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_883951_10 330214.NIDE0629 9.054e-72 246.0 COG0526@1|root,COG0526@2|Bacteria 2|Bacteria CO cell redox homeostasis yneN - - - - - - - - - - - AhpC-TSA QTD2_k127_883951_6 330214.NIDE0624 2.061e-126 414.0 COG0457@1|root,COG0457@2|Bacteria 330214.NIDE0624|- S peptidyl-tyrosine sulfation - - - - - - - - - - - - - QTD2_k127_883951_13 330214.NIDE0676 7.457e-53 194.0 COG3065@1|root,COG3065@2|Bacteria,3J1BB@40117|Nitrospirae 40117|Nitrospirae M Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07285 - - - - ko00000 - - - Slp QTD2_k127_883951_9 330214.NIDE0677 7.117e-80 272.0 COG1651@1|root,COG1651@2|Bacteria 2|Bacteria O Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process dsbA GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005623,GO:0006457,GO:0008150,GO:0008152,GO:0009987,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071236,GO:0140096 - ko:K03673 ko01503,map01503 M00728 - - ko00000,ko00001,ko00002,ko03110 - - iEcSMS35_1347.EcSMS35_4241 DSBA QTD2_k127_883951_1 330214.NIDE0678 0.0 1034.0 COG2217@1|root,COG2217@2|Bacteria,3J0CY@40117|Nitrospirae 40117|Nitrospirae P E1-E2 ATPase - - 3.6.3.4,3.6.3.54 ko:K01533,ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - E1-E2_ATPase,HMA,Hydrolase QTD2_k127_883951_3 330214.NIDE0681 1.254e-225 707.0 COG0265@1|root,COG0265@2|Bacteria,3J0X9@40117|Nitrospirae 40117|Nitrospirae M Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 QTD2_k127_883951_11 330214.NIDE0688 5.188e-70 242.0 COG0864@1|root,COG0864@2|Bacteria 2|Bacteria K response to nickel cation nikR GO:0000976,GO:0000984,GO:0000985,GO:0001017,GO:0001046,GO:0001047,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016151,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032991,GO:0032993,GO:0042802,GO:0043167,GO:0043169,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - ko:K07722 - - - - ko00000,ko03000 - - - NikR_C,RHH_1 QTD2_k127_883951_14 330214.NIDE0689 1.824e-30 124.0 2AIN5@1|root,3194H@2|Bacteria,3J1DR@40117|Nitrospirae 40117|Nitrospirae S Domain of unknown function (DUF3842) - - - - - - - - - - - - DUF3842 QTD2_k127_883951_4 330214.NIDE0690 2.091e-201 636.0 COG4772@1|root,COG4772@2|Bacteria 2|Bacteria P TonB-dependent receptor - - - - - - - - - - - - CarbopepD_reg_2,Plug,TonB_dep_Rec QTD2_k127_890295_1 330214.NIDE1240 5.447e-54 190.0 COG2768@1|root,COG2768@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - DUF2088,DUF362 QTD2_k127_890295_0 1266925.JHVX01000004_gene1201 5.186e-147 472.0 COG1562@1|root,COG1562@2|Bacteria,1R4ZD@1224|Proteobacteria,2VQQ2@28216|Betaproteobacteria,374P4@32003|Nitrosomonadales 28216|Betaproteobacteria I Squalene/phytoene synthase - - 2.5.1.21 ko:K00801 ko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130 - R00702,R02872,R06223 RC00362,RC00796,RC02839 ko00000,ko00001,ko01000,ko01006 - - - SQS_PSY QTD2_k127_890295_2 330214.NIDE1237 1.272e-44 166.0 COG4454@1|root,COG4454@2|Bacteria 2|Bacteria - - - - - ko:K14588 - - - - ko00000 - - - Copper-bind,Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3,Cupredoxin_1,SoxE QTD2_k127_890295_3 330214.NIDE1236 3.656e-14 73.0 COG0501@1|root,COG0501@2|Bacteria,3J0QG@40117|Nitrospirae 40117|Nitrospirae O Peptidase family M48 htpX - - ko:K03799 - M00743 - - ko00000,ko00002,ko01000,ko01002 - - - Peptidase_M48 QTD2_k127_901039_9 330214.NIDE0317 3.404e-52 190.0 COG3663@1|root,COG3663@2|Bacteria 2|Bacteria L G/U mismatch-specific uracil-DNA glycosylase activity mug GO:0000700,GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008263,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.28,6.3.3.2 ko:K01934,ko:K03649 ko00670,ko01100,ko03410,map00670,map01100,map03410 - R02301 RC00183 ko00000,ko00001,ko01000,ko03400 - - - UDG QTD2_k127_901039_12 1196835.A458_18220 3.832e-05 54.0 COG3152@1|root,COG3152@2|Bacteria,1NBFY@1224|Proteobacteria,1SMM2@1236|Gammaproteobacteria,1Z0VS@136846|Pseudomonas stutzeri group 1236|Gammaproteobacteria S membrane - - - - - - - - - - - - DUF805 QTD2_k127_901039_4 330214.NIDE1599 2.307e-140 450.0 COG0623@1|root,COG0623@2|Bacteria,3J11E@40117|Nitrospirae 40117|Nitrospirae I Enoyl-(Acyl carrier protein) reductase - - 1.3.1.10,1.3.1.9 ko:K00208 ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212 M00083,M00572 R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671 RC00052,RC00076,RC00120 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 QTD2_k127_901039_10 697282.Mettu_0036 1.323e-50 184.0 COG1186@1|root,COG1186@2|Bacteria,1RH75@1224|Proteobacteria,1S5YQ@1236|Gammaproteobacteria,1XGJ6@135618|Methylococcales 135618|Methylococcales J RF-1 domain - - - ko:K15034 - - - - ko00000,ko03012 - - - RF-1 QTD2_k127_901039_11 1122222.AXWR01000052_gene66 5.035e-20 101.0 2ENQZ@1|root,33GC6@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_901039_5 1535422.ND16A_1512 1.414e-134 442.0 COG0520@1|root,COG0520@2|Bacteria,1R4SM@1224|Proteobacteria,1RQR6@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Class V aminotransferase - - 5.1.1.17 ko:K04127 ko00311,ko01100,ko01130,map00311,map01100,map01130 M00673 R04147 RC00302 ko00000,ko00001,ko00002,ko01000 - - - Aminotran_5 QTD2_k127_901039_0 330214.NIDE0312 0.0 1560.0 COG0403@1|root,COG1003@1|root,COG0403@2|Bacteria,COG1003@2|Bacteria,3J0XT@40117|Nitrospirae 40117|Nitrospirae E Glycine cleavage system P-protein - - 1.4.4.2 ko:K00281,ko:K00283 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko00002,ko01000 - - - - QTD2_k127_901039_1 330214.NIDE0310 1.875e-289 895.0 COG1053@1|root,COG1053@2|Bacteria,3J0ZM@40117|Nitrospirae 40117|Nitrospirae C Fumarate reductase flavoprotein C-term - - 1.3.5.1,1.3.5.4 ko:K00239 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C QTD2_k127_901039_6 330214.NIDE0305 1.422e-123 398.0 COG0745@1|root,COG0745@2|Bacteria 330214.NIDE0305|- T phosphorelay signal transduction system - - - - - - - - - - - - - QTD2_k127_901039_2 330214.NIDE0304 3.636e-225 707.0 COG5000@1|root,COG5002@1|root,COG5000@2|Bacteria,COG5002@2|Bacteria,3J11K@40117|Nitrospirae 40117|Nitrospirae T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - - - - - - - - - - HATPase_c,HisKA QTD2_k127_901039_3 330214.NIDE0303 9.356e-209 662.0 COG0265@1|root,COG0265@2|Bacteria,3J0X9@40117|Nitrospirae 2|Bacteria M Evidence 2a Function of homologous gene experimentally demonstrated in an other organism htrA GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ,PDZ_2,Trypsin_2 QTD2_k127_901039_7 665571.STHERM_c16570 2.759e-97 327.0 COG0788@1|root,COG0788@2|Bacteria,2J7GR@203691|Spirochaetes 203691|Spirochaetes F Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) purU - 3.5.1.10 ko:K01433 ko00630,ko00670,map00630,map00670 - R00944 RC00026,RC00111 ko00000,ko00001,ko01000 - - - Formyl_trans_N QTD2_k127_901039_8 330214.NIDE0302 1.114e-70 244.0 COG0621@1|root,COG0621@2|Bacteria,3J0CD@40117|Nitrospirae 40117|Nitrospirae J Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,TRAM,UPF0004 QTD2_k127_903188_1 330214.NIDE4158 6.705e-290 903.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,3J0DP@40117|Nitrospirae 40117|Nitrospirae L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A QTD2_k127_903188_7 261292.Nit79A3_1596 5.14e-57 202.0 2E4SV@1|root,32ZM7@2|Bacteria,1N8VN@1224|Proteobacteria,2WBIK@28216|Betaproteobacteria,373EN@32003|Nitrosomonadales 28216|Betaproteobacteria - - - - - - - - - - - - - - PGPGW QTD2_k127_903188_6 330214.NIDE4161 1.403e-69 237.0 COG2210@1|root,COG2210@2|Bacteria 2|Bacteria P Belongs to the sulfur carrier protein TusA family - - - - - - - - - - - - DrsE_2 QTD2_k127_903188_4 330214.NIDE4162 3.849e-107 351.0 COG0177@1|root,COG0177@2|Bacteria,3J0K6@40117|Nitrospirae 2|Bacteria L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate nth GO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033683,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.11.2,4.2.99.18 ko:K01142,ko:K10773 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - EndIII_4Fe-2S,HhH-GPD QTD2_k127_903188_11 330214.NIDE4163 2.911e-28 114.0 COG0828@1|root,COG0828@2|Bacteria 2|Bacteria J Belongs to the bacterial ribosomal protein bS21 family rpsU GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - ko:K02970 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S21 QTD2_k127_903188_3 330214.NIDE4164 3.57e-142 470.0 COG3404@1|root,COG3643@1|root,COG3404@2|Bacteria,COG3643@2|Bacteria 2|Bacteria E Formiminotransferase domain ftcD - 2.1.2.5,4.3.1.4 ko:K00603,ko:K01746,ko:K13990 ko00340,ko00670,ko01100,map00340,map00670,map01100 - R02287,R02302,R03189 RC00165,RC00221,RC00223,RC00688,RC00870 ko00000,ko00001,ko01000,ko03036,ko04147 - - - FTCD,FTCD_C,FTCD_N QTD2_k127_903188_9 330214.NIDE4165 1.78e-40 151.0 COG0425@1|root,COG0425@2|Bacteria,3J1C1@40117|Nitrospirae 40117|Nitrospirae O Sulfurtransferase TusA - - - - - - - - - - - - TusA QTD2_k127_903188_5 330214.NIDE4166 7.005e-94 310.0 COG2210@1|root,COG2210@2|Bacteria 2|Bacteria P Belongs to the sulfur carrier protein TusA family cdr - - ko:K04085 ko04122,map04122 - - - ko00000,ko00001,ko01000,ko03016 - - - DrsE_2,Pyr_redox_2,Pyr_redox_dim,Rhodanese,TusA QTD2_k127_903188_2 330214.NIDE4167 5.978e-209 653.0 COG4638@1|root,COG4638@2|Bacteria 2|Bacteria P Rieske (2fe-2S) - - - - - - - - - - - - Rieske QTD2_k127_903188_0 330214.NIDE4168 0.0 1015.0 COG0475@1|root,COG0490@1|root,COG1226@1|root,COG0475@2|Bacteria,COG0490@2|Bacteria,COG1226@2|Bacteria,3J0Y7@40117|Nitrospirae 40117|Nitrospirae P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family - - - ko:K03455 - - - - ko00000 2.A.37 - - Na_H_Exchanger,TrkA_C,TrkA_N QTD2_k127_903188_8 330214.NIDE4169 9.7e-45 166.0 COG0637@1|root,COG0637@2|Bacteria 2|Bacteria S phosphonoacetaldehyde hydrolase activity - - 3.1.3.18,3.1.3.23 ko:K01091,ko:K07025,ko:K19270 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 QTD2_k127_917496_1 330214.NIDE4152 1.744e-139 452.0 COG1524@1|root,COG1524@2|Bacteria 2|Bacteria S mannose-ethanolamine phosphotransferase activity - - - - - - - - - - - - PE,Phosphodiest QTD2_k127_917496_0 330214.NIDE4150 2.481e-234 730.0 COG1413@1|root,COG1413@2|Bacteria,3J1E2@40117|Nitrospirae 40117|Nitrospirae C Evidence 4 Homologs of previously reported genes of - - - - - - - - - - - - HEAT_2,HEAT_PBS QTD2_k127_917496_4 211165.AJLN01000116_gene3124 8.045e-52 192.0 COG3391@1|root,COG3391@2|Bacteria 2|Bacteria CO amine dehydrogenase activity - - - - - - - - - - - - HemolysinCabind,Lactonase QTD2_k127_937021_5 394.NGR_c15980 2.228e-19 90.0 2EHAG@1|root,3394C@2|Bacteria,1NK4E@1224|Proteobacteria,2UJZB@28211|Alphaproteobacteria 28211|Alphaproteobacteria S Family of unknown function (DUF5372) - - - - - - - - - - - - DUF5372 QTD2_k127_937021_3 94624.Bpet1408 4.266e-46 171.0 COG3415@1|root,COG3415@2|Bacteria,1RKUV@1224|Proteobacteria,2WFVI@28216|Betaproteobacteria 28216|Betaproteobacteria L Winged helix-turn helix - - - - - - - - - - - - HTH_28,HTH_29 QTD2_k127_937021_0 94624.Bpet1409 4.622e-296 927.0 COG1961@1|root,COG1961@2|Bacteria,1MVIE@1224|Proteobacteria,2VK01@28216|Betaproteobacteria 28216|Betaproteobacteria L Resolvase domain - - - - - - - - - - - - Recombinase,Resolvase,Zn_ribbon_recom QTD2_k127_937021_1 338963.Pcar_1381 2.616e-110 362.0 COG2801@1|root,COG2801@2|Bacteria,1MZ45@1224|Proteobacteria,42MM6@68525|delta/epsilon subdivisions,2WJ53@28221|Deltaproteobacteria 28221|Deltaproteobacteria L PFAM Integrase catalytic region - - - - - - - - - - - - HTH_29,rve QTD2_k127_937021_4 290317.Cpha266_1646 3.844e-34 133.0 COG2963@1|root,COG2963@2|Bacteria,1FFI3@1090|Chlorobi 1090|Chlorobi L PFAM transposase IS3 IS911 family protein - - - - - - - - - - - - HTH_Tnp_1 QTD2_k127_937021_2 443144.GM21_3966 8.513e-63 225.0 COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria 1224|Proteobacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,Response_reg QTD2_k127_952618_3 330214.NIDE0860 8.296e-286 904.0 COG1196@1|root,COG1196@2|Bacteria,3J0W4@40117|Nitrospirae 40117|Nitrospirae D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N QTD2_k127_952618_0 330214.NIDE0861 0.0 1141.0 COG1657@1|root,COG1657@2|Bacteria,3J0ZD@40117|Nitrospirae 40117|Nitrospirae I Squalene-hopene cyclase C-terminal domain - - 4.2.1.129,5.4.99.17 ko:K06045 ko00909,ko01110,map00909,map01110 - R07322,R07323 RC01850,RC01851 ko00000,ko00001,ko01000 - - - SQHop_cyclase_C,SQHop_cyclase_N QTD2_k127_952618_16 330214.NIDE0862 7.437e-58 211.0 COG0775@1|root,COG0775@2|Bacteria 2|Bacteria F adenosylhomocysteine nucleosidase activity MA20_16045 - 1.17.7.4,3.2.2.9 ko:K01243,ko:K03527 ko00270,ko00900,ko01100,ko01110,ko01130,ko01230,map00270,map00900,map01100,map01110,map01130,map01230 M00034,M00096,M00609 R00194,R01401,R05884,R08210 RC00063,RC00318,RC01137,RC01487 ko00000,ko00001,ko00002,ko01000 - - - PNP_UDP_1 QTD2_k127_952618_11 330214.NIDE0863 5.376e-122 395.0 COG0767@1|root,COG0767@2|Bacteria,3J0I7@40117|Nitrospirae 40117|Nitrospirae Q Permease MlaE - - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE QTD2_k127_952618_9 330214.NIDE0864 5.465e-125 403.0 COG1127@1|root,COG1127@2|Bacteria,3J0J2@40117|Nitrospirae 40117|Nitrospirae Q ABC transporter - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran QTD2_k127_952618_15 330214.NIDE0865 1.306e-63 224.0 COG1463@1|root,COG1463@2|Bacteria,3J191@40117|Nitrospirae 40117|Nitrospirae Q MlaD protein - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD QTD2_k127_952618_13 330214.NIDE0866 1.834e-85 288.0 COG2854@1|root,COG2854@2|Bacteria,3J13Z@40117|Nitrospirae 40117|Nitrospirae Q Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07323 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - MlaC QTD2_k127_952618_6 330214.NIDE0867 1.066e-193 612.0 COG4775@1|root,COG4775@2|Bacteria,3J10P@40117|Nitrospirae 40117|Nitrospirae M Surface antigen - - - - - - - - - - - - Bac_surface_Ag QTD2_k127_952618_10 330214.NIDE0868 6.391e-125 410.0 COG2067@1|root,COG2067@2|Bacteria 2|Bacteria I long-chain fatty acid transporting porin activity - - - - - - - - - - - - DUF3187 QTD2_k127_952618_1 330214.NIDE0869 0.0 1117.0 COG1154@1|root,COG1154@2|Bacteria,3J0WE@40117|Nitrospirae 40117|Nitrospirae H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,Transket_pyr,Transketolase_C QTD2_k127_952618_4 330214.NIDE0870 1.654e-216 676.0 COG0821@1|root,COG0821@2|Bacteria,3J0EA@40117|Nitrospirae 40117|Nitrospirae I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate ispG GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 ko:K03526 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R08689,R10859 RC01486 ko00000,ko00001,ko00002,ko01000 - - - GcpE QTD2_k127_952618_5 330214.NIDE0891 5.226e-204 638.0 COG0535@1|root,COG0535@2|Bacteria,3J0X6@40117|Nitrospirae 40117|Nitrospirae S Domain of unknown function (DUF3463) - - - - - - - - - - - - DUF3463,Radical_SAM QTD2_k127_952618_18 330214.NIDE0892 3.916e-43 161.0 29E6W@1|root,3014W@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - QTD2_k127_952618_14 330214.NIDE0895 3.012e-85 285.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - - - - - - - - - - Cytochrome_CBB3 QTD2_k127_952618_2 330214.NIDE0896 0.0 1035.0 COG1271@1|root,COG1271@2|Bacteria 2|Bacteria C aerobic electron transport chain - - 1.10.3.14 ko:K00425,ko:K08738 ko00190,ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00190,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00153,M00595 R10151,R11325 RC00061,RC03151,RC03152 ko00000,ko00001,ko00002,ko01000 3.D.4.3,3.D.4.6 - - Cyt_bd_oxida_I,Cytochrome_CBB3 QTD2_k127_952618_12 330214.NIDE0897 4.299e-116 379.0 COG2010@1|root,COG2010@2|Bacteria 2|Bacteria C Cytochrome c - - - ko:K17052 - - - - ko00000,ko02000 5.A.3.8 - - Cytochrom_C,EB_dh QTD2_k127_952618_7 330214.NIDE0898 8.14e-162 513.0 COG0723@1|root,COG0723@2|Bacteria 2|Bacteria C oxidoreductase activity, acting on diphenols and related substances as donors - - 1.3.5.1,1.3.5.4 ko:K00240,ko:K03886 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00151,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - Rieske QTD2_k127_952618_8 330214.NIDE0899 3.7e-135 431.0 COG1290@1|root,COG1290@2|Bacteria,3J0Q6@40117|Nitrospirae 40117|Nitrospirae C Cytochrome b/b6/petB - - - ko:K00412 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko03029 - - - Cytochrom_B_C,Cytochrome_B QTD2_k127_9853_1 330214.NIDE1931 3.561e-206 645.0 COG1894@1|root,COG1894@2|Bacteria,3J0WX@40117|Nitrospirae 40117|Nitrospirae C NADH-ubiquinone oxidoreductase-F iron-sulfur binding region - - 1.6.5.3 ko:K00124,ko:K00335 ko00190,ko00630,ko00680,ko01100,ko01120,ko01200,map00190,map00630,map00680,map01100,map01120,map01200 M00144 R00519,R11945 RC00061,RC02796 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_51K,NADH_4Fe-4S QTD2_k127_9853_0 330214.NIDE1932 0.0 1131.0 COG3383@1|root,COG3383@2|Bacteria,3J0UR@40117|Nitrospirae 40117|Nitrospirae C Molydopterin dinucleotide binding domain - - 1.17.1.9 ko:K00123 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding ## 2428 queries scanned ## Total time (seconds): 5.188968181610107 ## Rate: 467.92 q/s